BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006744
         (632 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255544107|ref|XP_002513116.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223548127|gb|EEF49619.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1128

 Score =  835 bits (2158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/676 (63%), Positives = 496/676 (73%), Gaps = 58/676 (8%)

Query: 13   YFFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSP 72
            YFFYGHRKPSQNRP V GGLFSNRQ ++ P ++ +P    PF++Q WDP   P   ++SP
Sbjct: 455  YFFYGHRKPSQNRPVVRGGLFSNRQIIK-PQNSIKPKNPVPFDLQNWDPQN-PCPSSKSP 512

Query: 73   P--SDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVEN 130
            P   +     L + LSPI+RFI DAFRKN  +WGP VV EL KLRRVTPDLV+EVLKVEN
Sbjct: 513  PLSQNHSLSTLSQRLSPISRFIRDAFRKNSNKWGPPVVAELRKLRRVTPDLVSEVLKVEN 572

Query: 131  NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR--IAEML 188
            +P LAS+FFHWAGKQKGY+HNFASYNA AYCL+R++ FRAADQ+PELMDSQG+    +  
Sbjct: 573  DPHLASQFFHWAGKQKGYRHNFASYNAYAYCLNRSSFFRAADQLPELMDSQGKPPTEKQF 632

Query: 189  EIL-----------------EKMRRNLCKPDVFAYTAMIRVLAAERNLDACL-------- 223
            EIL                 +KM++   KP  F Y  ++  L    +LD  L        
Sbjct: 633  EILIRMHSDANRGLRVYHVYQKMKKFGVKPRAFLYNRIMDALIKTAHLDLALVVYDDFKS 692

Query: 224  ---------------------------RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
                                        VWEEMK+D V  DVMAY T++ GLCKGGRV  
Sbjct: 693  DGLVEDSVTYMILIKGLCKFGRIDEMMEVWEEMKRDGVNPDVMAYATVVTGLCKGGRVAE 752

Query: 257  GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
            G+ELF+EMKEN +LIDRAIYGVLIE  V +GK+G ACDLL+ LVDSGYRADLGIYNS+I 
Sbjct: 753  GYELFKEMKENKVLIDRAIYGVLIEAFVKDGKIGSACDLLQGLVDSGYRADLGIYNSLIE 812

Query: 317  GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
            GLC VK+ DKA KLF++ VQ+ L  DF TVNP+LV  AEM RMD F KLL QME+L FSV
Sbjct: 813  GLCNVKRVDKARKLFQIMVQEGLELDFKTVNPMLVSYAEMKRMDEFCKLLVQMERLGFSV 872

Query: 377  AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFG 436
              D+ K F FLV +EE I +AL+VFEELK KGY SV IYN LM ALL++GEV+KAL LF 
Sbjct: 873  MDDISKLFSFLVRREEIITLALEVFEELKVKGYISVLIYNTLMEALLKVGEVRKALSLFS 932

Query: 437  KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            +M+ LN E +S ++SIA+ C VE G+I EAC CHNKIIEMS VPSVAAY  LTKGLC IG
Sbjct: 933  EMKDLNCEPDSNTYSIAVICFVEDGNIQEACVCHNKIIEMSSVPSVAAYCSLTKGLCDIG 992

Query: 497  EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            EID AMMLVRDCLGNV SGP EFKY LT+LHVCRSG+AEK+IEVLNEM  E CPPNEVI 
Sbjct: 993  EIDEAMMLVRDCLGNVTSGPMEFKYTLTVLHVCRSGDAEKVIEVLNEMMHENCPPNEVIL 1052

Query: 557  SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFF 616
            SAIISGMCKHGTLEEARKVFTNLRERKLLTEA TI YDE LIEHMKKKTADLV+SGLKFF
Sbjct: 1053 SAIISGMCKHGTLEEARKVFTNLRERKLLTEAKTIFYDERLIEHMKKKTADLVVSGLKFF 1112

Query: 617  GLESKLKAKGCKLLSS 632
            GLESKL+AKGC LLS+
Sbjct: 1113 GLESKLRAKGCTLLST 1128


>gi|359495078|ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containing protein At4g20740-like
            [Vitis vinifera]
          Length = 1294

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/676 (60%), Positives = 477/676 (70%), Gaps = 59/676 (8%)

Query: 11   KPYFFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQ 70
            K YFFYGHRKPSQNRPTV+GGLFSNR +L NP   +  + +  FN+Q WDP   P     
Sbjct: 551  KFYFFYGHRKPSQNRPTVHGGLFSNRTTL-NPKPPTLQNPTTHFNLQNWDPDS-PKALAI 608

Query: 71   SPPSDP--KTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKV 128
             P   P  + F + ++LSPIAR+I D+FRK++  WGP VV +L+KLRRVTP LVAEVLKV
Sbjct: 609  PPSKTPCERFFDIAKNLSPIARYICDSFRKHR-NWGPPVVADLNKLRRVTPVLVAEVLKV 667

Query: 129  ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR--IAE 186
            + +P + SKFFHWAGKQKGYKHNFASYNA AYCL+R+N FRAADQVPELM+ QG+    +
Sbjct: 668  QTDPVICSKFFHWAGKQKGYKHNFASYNAFAYCLNRSNQFRAADQVPELMNMQGKPPSEK 727

Query: 187  MLEIL-----------------EKMRRNLCKPDVFAY----------------------- 206
              EIL                 EKM++   KP VF Y                       
Sbjct: 728  QFEILIRMHIDANRGLRVYYVYEKMKKFGIKPRVFLYNRIMDGLVKTGHLDLAMSVYEDF 787

Query: 207  ----------TAMIRV--LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
                      T MI V  L     +D  L VWEEM+KD VE DVMAY TL+  LC G RV
Sbjct: 788  KEDGLVEESVTYMILVKGLCKAGRIDEVLEVWEEMRKDKVEPDVMAYTTLVAALCNGNRV 847

Query: 255  VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
              G ELF+EMK+   LIDRAIYG LIEG V   +VG ACDLLKDL+DSGYRADL IYNS+
Sbjct: 848  GEGFELFKEMKQKKYLIDRAIYGSLIEGFVVNERVGSACDLLKDLMDSGYRADLAIYNSL 907

Query: 315  IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
            I G+C VKQ DKAYKLF+VTV + L P+F TV P+LV  AEM RMD+F  LL QM+KL F
Sbjct: 908  IEGMCNVKQVDKAYKLFQVTVHESLEPNFLTVKPMLVSYAEMKRMDDFCSLLGQMQKLGF 967

Query: 375  SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYL 434
             V  DL KFF  ++ K ER+ +AL+VFE LK KGY S+ IYNILM A+   GEVKKAL L
Sbjct: 968  PVIDDLSKFFSVMIEKGERLKLALEVFEHLKAKGYCSISIYNILMEAIHRTGEVKKALSL 1027

Query: 435  FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
            F  ++  N + +S ++S AI C VE GD+ EAC C+NKIIEM Q+PSVAAY  L KGLCK
Sbjct: 1028 FDDIKDSNFKPDSSTYSNAIICFVEVGDVQEACACYNKIIEMCQLPSVAAYRSLVKGLCK 1087

Query: 495  IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
              EIDAA+MLVRDCL NV SGP EFKY LTILH C+SG AEK+I+VLNEM QEGC P+EV
Sbjct: 1088 SEEIDAAIMLVRDCLANVTSGPMEFKYTLTILHACKSGNAEKVIDVLNEMMQEGCTPDEV 1147

Query: 555  ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK 614
              SA+ISGMCKHGTLEEARKVF+N+RERKLLTEAN IVYDEILIEHMKKKTADLVLSGLK
Sbjct: 1148 TYSALISGMCKHGTLEEARKVFSNMRERKLLTEANVIVYDEILIEHMKKKTADLVLSGLK 1207

Query: 615  FFGLESKLKAKGCKLL 630
            FFGLESKL++KG  LL
Sbjct: 1208 FFGLESKLRSKGSTLL 1223


>gi|357457245|ref|XP_003598903.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355487951|gb|AES69154.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 767

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/725 (53%), Positives = 473/725 (65%), Gaps = 97/725 (13%)

Query: 1   MPPQTPQRPPKPYFFYGHRKPSQNRPTVYGGLFSNRQSLRNPN-SASEPHQSPPFNVQKW 59
           MPPQTP  P K YFFYGHRKPSQNRPTV GGLFSNR++L  P   +++P  S  F +QKW
Sbjct: 1   MPPQTPTPPNKFYFFYGHRKPSQNRPTVRGGLFSNRKTLTPPKPKSTKPTNS--FQIQKW 58

Query: 60  DPHYLPNQKTQSPPSD---PKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRR 116
           DPH+L    + SP        TF     LSPIARFI DAFRKN   WGP VVTEL+KLRR
Sbjct: 59  DPHFLSQPNSPSPSPSPSPEATFSASLRLSPIARFILDAFRKNNNNWGPPVVTELNKLRR 118

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE 176
           VTP LVAEVLKV+ NPTLA KFFHW  KQKGY HNFASYNA  YCL+R N FRAADQ+PE
Sbjct: 119 VTPTLVAEVLKVQTNPTLAFKFFHWVEKQKGYHHNFASYNAFTYCLNRANHFRAADQLPE 178

Query: 177 LMDSQ-------------------GRIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAE 216
           LMD+Q                   GR   +  + +KMR     KP VF Y  ++  L   
Sbjct: 179 LMDAQGKPPSEKQFEILIRMHSDAGRGLRVYHVYDKMRNKFGVKPRVFLYNRIMDALVKT 238

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV-----VRGH------------- 258
            +LD  L V+ + ++D +  + + ++ LI GLCKGG++     V G              
Sbjct: 239 GHLDLALSVYNDFREDGLVEESVTFMILIKGLCKGGKIDEMLEVLGRMREKLCKPDVFAY 298

Query: 259 -----------------ELFREMKENGILIDRAIYGVLIEGLVGEGKV------------ 289
                             +++EMK + +  D   YG +I GL   G+V            
Sbjct: 299 TALVRIMVKEGNLDGCLRVWKEMKRDRVDPDVMAYGTIIGGLAKGGRVSEGYELFKEMKS 358

Query: 290 -----------------------GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
                                  G A DLLKDLV SGYRADLG+YN++I GLC + + +K
Sbjct: 359 KGHLIDRAIYGSLVESFVAGNKVGLAFDLLKDLVSSGYRADLGMYNNLIEGLCNLNKVEK 418

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           AYKLF+VT+Q+ L PDF +V PLL+  AE  RM+ FF LL +M+KL F V  DL KFF  
Sbjct: 419 AYKLFQVTIQEGLEPDFLSVKPLLLAYAEAKRMEEFFMLLEKMKKLGFPVIDDLSKFFSH 478

Query: 387 LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
           LV K+    MAL++F  LK K Y SV IYNI M +L   G+V+KAL LF +++G +LE +
Sbjct: 479 LVEKKGP-EMALEIFTHLKEKSYVSVEIYNIFMESLHLSGKVEKALSLFDEIKGSDLEPD 537

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           S +++IAI C V+ G I EACECHNKIIEMS +PSVAAYNCL KGLC IGEID AM+LVR
Sbjct: 538 SSTYNIAILCLVDHGQIKEACECHNKIIEMSSIPSVAAYNCLAKGLCNIGEIDEAMLLVR 597

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
           DCLGNV SGP EFKY LTI+ +C+S  AEK+I+VLNEM QEGC  + V+CSAIISGMCK+
Sbjct: 598 DCLGNVTSGPMEFKYCLTIIRMCKSNVAEKLIDVLNEMMQEGCSLDNVVCSAIISGMCKY 657

Query: 567 GTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKG 626
           GT+EEARKVF+ LRERKLLTE++TIVYDE+LI+HMKKKTADLV+SGLKFFGLESKLK+KG
Sbjct: 658 GTIEEARKVFSILRERKLLTESDTIVYDELLIDHMKKKTADLVISGLKFFGLESKLKSKG 717

Query: 627 CKLLS 631
           CKL S
Sbjct: 718 CKLPS 722


>gi|356574085|ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Glycine max]
          Length = 733

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/737 (53%), Positives = 480/737 (65%), Gaps = 109/737 (14%)

Query: 1   MPPQTPQ--RP---------PKP----YFFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSA 45
           MPPQ P+  +P         PKP    YFFYGHR PSQNRPTV GGLFSNRQ+L NPN +
Sbjct: 1   MPPQIPKPTKPRNCGPPFTTPKPTNKFYFFYGHRNPSQNRPTVRGGLFSNRQTL-NPNPS 59

Query: 46  SEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGP 105
                + PFN++ WDPH+L N  +   PS   +  L+  LSPIARFI DAFR+N  +W P
Sbjct: 60  QPKPTTKPFNIKNWDPHFLSNPNSNPSPSTLSSASLR--LSPIARFIVDAFRRNDNKWCP 117

Query: 106 QVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRN 165
            V  ELSKLRR+TP+LVAEVLKV+ N TLASKFFHWAG Q+GY HNFASYNALAYCL+R+
Sbjct: 118 NVAAELSKLRRITPNLVAEVLKVQTNHTLASKFFHWAGSQRGYHHNFASYNALAYCLNRH 177

Query: 166 NLFRAADQVPELMDSQG-------------------RIAEMLEILEKMRRNL-CKPDVFA 205
           + FRAADQ+PELM+SQG                   R   +  + EKMR     KP VF 
Sbjct: 178 HQFRAADQLPELMESQGKPPSEKQFEILIRMHSDANRGLRVYHVYEKMRNKFGVKPRVFL 237

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV-----VRGH-- 258
           Y  ++  L    +LD  L V++++K+D +  + + ++ L+ GLCK GR+     V G   
Sbjct: 238 YNRVMDALVRTGHLDLALSVYDDLKEDGLVEESVTFMVLVKGLCKCGRIDEMLEVLGRMR 297

Query: 259 ----------------------------ELFREMKENGILIDRAIYGVLIEGLVGEGKV- 289
                                        ++ EMK + +  D   Y  +I GL   G+V 
Sbjct: 298 ERLCKPDVFAYTALVKILVPAGNLDACLRVWEEMKRDRVEPDVKAYATMIVGLAKGGRVQ 357

Query: 290 ----------GKAC------------------------DLLKDLVDSGYRADLGIYNSII 315
                     GK C                        DLLKDLV SGYRADLGIY  +I
Sbjct: 358 EGYELFREMKGKGCLVDRVIYGALVEAFVAEGKVELAFDLLKDLVSSGYRADLGIYICLI 417

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            GLC + +  KAYKLF++TV++ L PDF TV PLLV  AE  RM+ F KLL QM+KL F 
Sbjct: 418 EGLCNLNRVQKAYKLFQLTVREGLEPDFLTVKPLLVAYAEANRMEEFCKLLEQMQKLGFP 477

Query: 376 VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLF 435
           V ADL KFF  LV K+  I MAL+ F +LK KG+ SV IYNI M +L +IGEVKKAL LF
Sbjct: 478 VIADLSKFFSVLVEKKGPI-MALETFGQLKEKGHVSVEIYNIFMDSLHKIGEVKKALSLF 536

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M+GL+L+ +S ++  AI C V+ G+I EAC CHN+IIEMS +PSVAAY+ LTKGLC+I
Sbjct: 537 DEMKGLSLKPDSFTYCTAILCLVDLGEIKEACACHNRIIEMSCIPSVAAYSSLTKGLCQI 596

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           GEID AM+LVRDCLGNV+ GP EFKY+LTI+H C+S  AEK+I+VLNEM ++GC  + VI
Sbjct: 597 GEIDEAMLLVRDCLGNVSDGPLEFKYSLTIIHACKSNVAEKVIDVLNEMIEQGCSLDNVI 656

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKF 615
             +IISGMCKHGT+EEARKVF+NLRER  LTE+NTIVYDE+LI+HMKKKTADLVLS LKF
Sbjct: 657 YCSIISGMCKHGTIEEARKVFSNLRERNFLTESNTIVYDELLIDHMKKKTADLVLSSLKF 716

Query: 616 FGLESKLKAKGCKLLSS 632
           FGLESKLKAKGCKLL S
Sbjct: 717 FGLESKLKAKGCKLLPS 733


>gi|296081308|emb|CBI17752.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/711 (52%), Positives = 463/711 (65%), Gaps = 94/711 (13%)

Query: 11  KPYFFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQ 70
           K YFFYGHRKPSQNRPTV+GGLFSNR +L NP   +  + +  FN+Q WDP   P     
Sbjct: 12  KFYFFYGHRKPSQNRPTVHGGLFSNRTTL-NPKPPTLQNPTTHFNLQNWDPDS-PKALAI 69

Query: 71  SPPSDP--KTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKV 128
            P   P  + F + ++LSPIAR+I D+FRK++  WGP VV +L+KLRRVTP LVAEVLKV
Sbjct: 70  PPSKTPCERFFDIAKNLSPIARYICDSFRKHR-NWGPPVVADLNKLRRVTPVLVAEVLKV 128

Query: 129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR--IAE 186
           + +P + SKFFHWAGKQKGYKHNFASYNA AYCL+R+N FRAADQVPELM+ QG+    +
Sbjct: 129 QTDPVICSKFFHWAGKQKGYKHNFASYNAFAYCLNRSNQFRAADQVPELMNMQGKPPSEK 188

Query: 187 MLEIL-----------------EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
             EIL                 EKM++   KP VF Y  ++  L    +LD  + V+E+ 
Sbjct: 189 QFEILIRMHIDANRGLRVYYVYEKMKKFGIKPRVFLYNRIMDGLVKTGHLDLAMSVYEDF 248

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRV---------VRGH---------------------- 258
           K+D +  + + Y+ L+ GLCK GR+         +RG+                      
Sbjct: 249 KEDGLVEESVTYMILVKGLCKAGRIDEVLELLDRMRGNLCKPDVFAYTAMVKVLVAEGNL 308

Query: 259 ----ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY---------- 304
                ++ EM+++ +  D   Y  L+  L    +VG+  +L K++    Y          
Sbjct: 309 DGCLRVWEEMRKDKVEPDVMAYTTLVAALCNGNRVGEGFELFKEMKQKKYLIDRAIYGSL 368

Query: 305 -------------------------RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339
                                    RADL IYNS+I G+C VKQ DKAYKLF+VTV + L
Sbjct: 369 IEGFVVNERVGSACDLLKDLMDSGYRADLAIYNSLIEGMCNVKQVDKAYKLFQVTVHESL 428

Query: 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALD 399
            P+F TV P+LV  AEM RMD+F  LL QM+KL F V  DL KFF  ++ K ER+ +AL+
Sbjct: 429 EPNFLTVKPMLVSYAEMKRMDDFCSLLGQMQKLGFPVIDDLSKFFSVMIEKGERLKLALE 488

Query: 400 VFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           VFE LK KGY S+ IYNILM A+   GEVKKAL LF  ++  N + +S ++S AI C VE
Sbjct: 489 VFEHLKAKGYCSISIYNILMEAIHRTGEVKKALSLFDDIKDSNFKPDSSTYSNAIICFVE 548

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
            GD+ EAC C+NKIIEM Q+PSVAAY  L KGLCK  EIDAA+MLVRDCL NV SGP EF
Sbjct: 549 VGDVQEACACYNKIIEMCQLPSVAAYRSLVKGLCKSEEIDAAIMLVRDCLANVTSGPMEF 608

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           KY LTILH C+SG AEK+I+VLNEM QEGC P+EV  SA+ISGMCKHGTLEEARKVF+N+
Sbjct: 609 KYTLTILHACKSGNAEKVIDVLNEMMQEGCTPDEVTYSALISGMCKHGTLEEARKVFSNM 668

Query: 580 RERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKLL 630
           RERKLLTEAN IVYDEILIEHMKKKTADLVLSGLKFFGLESKL++KG  LL
Sbjct: 669 RERKLLTEANVIVYDEILIEHMKKKTADLVLSGLKFFGLESKLRSKGSTLL 719


>gi|449445049|ref|XP_004140286.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Cucumis sativus]
 gi|449531474|ref|XP_004172711.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Cucumis sativus]
          Length = 726

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/729 (50%), Positives = 464/729 (63%), Gaps = 107/729 (14%)

Query: 6   PQRPPKPYFFYGHR--KPSQNRPTVYGGLFSNRQSLRNPNSASEPHQ--SP---PFNVQK 58
           PQ+P K YF+YGHR   P Q+RPTVYGG F+NR+SL  P+    PHQ  SP   PF +  
Sbjct: 3   PQKPHKQYFYYGHRHRNPHQHRPTVYGGFFTNRRSLPPPS----PHQPTSPKPQPFLLHN 58

Query: 59  WDPHYLPNQKTQSPPSDPKT--FQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRR 116
           WDP  LP+QK  + PS      F     LSPIARFI D FRKNQ QWGP V++EL+KLRR
Sbjct: 59  WDPD-LPSQKRSNLPSSTSDAFFSTSLRLSPIARFIVDVFRKNQNQWGPPVISELNKLRR 117

Query: 117 VTPDLVAEVLKV----ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAAD 172
           VTPDLVAEVLK     ++N  LASKFF+WAGKQKG+ H FASYNA AYCL+R+N FRAAD
Sbjct: 118 VTPDLVAEVLKASHRRDSNSILASKFFYWAGKQKGFHHTFASYNAFAYCLNRHNRFRAAD 177

Query: 173 QVPELMDSQGR--IAEMLEIL-----------------EKMRRNLCKPDVFAYTAMIRVL 213
           Q+PELMDSQG+    +  EIL                 EKM++    P VF Y  ++  L
Sbjct: 178 QIPELMDSQGKPPSEKQFEILIRMHCDANRGLRVYYVYEKMKKFGVVPRVFLYNRILDAL 237

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL------------- 260
               +LD  L V+ + +++ +  + + ++ LI GLCK GRV    EL             
Sbjct: 238 VKTDHLDLALTVYRDFQENGLVEESVTFMILIKGLCKAGRVDEMLELLARMRANLCKPDV 297

Query: 261 ----------------------FREMKENGILIDRAIYGVLIEGLVGEGK---------- 288
                                 + EM+ + +  D   YG LI GL   G+          
Sbjct: 298 FAYTAMVKVLASKDNLEGCLRVWDEMRADRVEPDVMAYGTLIIGLCKVGRAQKGYELFQE 357

Query: 289 -------------------------VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
                                    VG ACDL KDLVDSGYRADLGIY+S+I GLC V Q
Sbjct: 358 MKGKRILIDRAIYGTLIEAFVQDEKVGLACDLFKDLVDSGYRADLGIYHSLIKGLCNVNQ 417

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            DKAYKLF++T+++DL PDF TV P+++   E GRMD+F+KL++ ++KL+FSV   L KF
Sbjct: 418 VDKAYKLFQLTIREDLKPDFETVKPIMMMYVETGRMDDFWKLVSLLQKLEFSVDDVLSKF 477

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
             F+V +E++I +ALDVF  +  KGY SV +YN+++GAL   G+  KAL ++  M+  N+
Sbjct: 478 LSFMVEEEDKISVALDVFHGMIDKGYGSVALYNVMVGALHRYGQANKALEIYNDMKNSNI 537

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
           E NS ++SIA+ C VE G I EAC  HNKI+E+  VPS+AAY  L++GL KI EI+A MM
Sbjct: 538 EPNSTTYSIALLCFVEIGKIQEACASHNKIVELGSVPSIAAYCSLSEGLFKICEINAVMM 597

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           LVRDCL N+ SGP EFKYALTI+H C+SG+AE +I+VL EM  + C P+ V  SAIISGM
Sbjct: 598 LVRDCLANIESGPQEFKYALTIVHACKSGKAEMVIDVLKEMVLQDCVPSSVAYSAIISGM 657

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLK 623
            K+GTL+EA+KVF +LRERK LTEAN IV +E+LIEHMKKKTADLV  GLKFF LES+LK
Sbjct: 658 SKYGTLDEAKKVFLHLRERKQLTEANCIVCEELLIEHMKKKTADLVRCGLKFFNLESRLK 717

Query: 624 AKGCKLLSS 632
           AKGC LLS+
Sbjct: 718 AKGCNLLST 726


>gi|224075802|ref|XP_002304774.1| predicted protein [Populus trichocarpa]
 gi|222842206|gb|EEE79753.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/715 (52%), Positives = 456/715 (63%), Gaps = 98/715 (13%)

Query: 13  YFFYGHRKPSQNRPTVYGGLFSNRQSLRN--PNSASEPHQSPPFNVQKWDPHY-LPNQKT 69
           YFFYGHRKPSQNRP V GGLF+NRQ+++   P +   P +  PF++ KWDP   LP+Q  
Sbjct: 17  YFFYGHRKPSQNRPVVRGGLFTNRQTVKPQPPKNPITPFK--PFDLHKWDPQQNLPHQPQ 74

Query: 70  QSPPSDPKT---FQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVL 126
            S P  P++     L + LSPIARFI DAFRKN+ QWGP+VVTEL KLRRVTPDLVAEVL
Sbjct: 75  PSKPQSPRSRHSLALSQRLSPIARFILDAFRKNRNQWGPEVVTELCKLRRVTPDLVAEVL 134

Query: 127 KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR--I 184
           KVENNP LA+KFFHWAGKQKG+KH FASYNA AY L+R+N FRAADQ+PELM++QG+   
Sbjct: 135 KVENNPQLATKFFHWAGKQKGFKHTFASYNAFAYNLNRSNFFRAADQLPELMEAQGKPPT 194

Query: 185 AEMLEIL-----------------EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWE 227
            +  EIL                 +KM +   KP VF Y  ++  L    +LD  L V+E
Sbjct: 195 EKQFEILIRMHSDANRGLRVYYVYQKMVKFGVKPRVFLYNRIMDSLIKTGHLDLALSVYE 254

Query: 228 EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
           + ++D +  + + Y+ LI GLCK GR+    E+   M+EN    D   Y  ++  L GEG
Sbjct: 255 DFRRDGLVEESVTYMILIKGLCKAGRIEEMMEVLGRMRENLCKPDVFAYTAMVRALAGEG 314

Query: 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF---------------- 331
            +     + +++   G   D+  Y +++  LC+  + DK Y++F                
Sbjct: 315 NLDACLRVWEEMKRDGVEPDVMAYVTLVTALCKGGRVDKGYEVFKEMKGRRILIDRGIYG 374

Query: 332 ---EVTVQD-----------DLA-----PDFSTVNPLLVCCAEMGRMDNFFKLL------ 366
              E  V D           DL       D    N L+     + R+D   KL       
Sbjct: 375 ILVEAFVADGKIGLACDLLKDLVDSGYRADLRIYNSLIEGFCNVKRVDKAHKLFQVTVQE 434

Query: 367 ----------------AQMEK-------------LKFSVAADLEKFFEFLVGKEERIMMA 397
                           A+M+K             L FSV  DL KFF ++VGK ER MMA
Sbjct: 435 GLERDFKTVNPLLMSYAEMKKMDDFCKLLKQMEKLGFSVFDDLSKFFSYVVGKPERTMMA 494

Query: 398 LDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
           L+VFE+LK KGYSSVPIYNILM ALL IGE+K+AL LFG+M+ LN + +S ++SIAI C 
Sbjct: 495 LEVFEDLKVKGYSSVPIYNILMEALLTIGEMKRALSLFGEMKDLN-KPDSTTYSIAIICF 553

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
           VE G+I EAC  HNKI+EM  VPSVAAY  L KGLC  GEIDAAMMLVRDCL +V SGP 
Sbjct: 554 VEDGNIQEACVSHNKIVEMFCVPSVAAYCSLAKGLCDNGEIDAAMMLVRDCLASVESGPM 613

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
           EFKY+LTILH C++G AEK+I+VLNEM QEGC PNEVI SAIISGMCKHGT EEARKVFT
Sbjct: 614 EFKYSLTILHACKTGGAEKVIDVLNEMMQEGCTPNEVIYSAIISGMCKHGTFEEARKVFT 673

Query: 578 NLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKLLSS 632
           +LR+RK+LTEA TIV+DEILIEHMKKKTADLVL+GLKFFGLESKLKA G  LL S
Sbjct: 674 DLRQRKILTEAKTIVFDEILIEHMKKKTADLVLAGLKFFGLESKLKAMGSTLLGS 728


>gi|15233383|ref|NP_193806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75211707|sp|Q9SVH3.1|PP328_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20740
 gi|5262214|emb|CAB45840.1| putative protein [Arabidopsis thaliana]
 gi|7268870|emb|CAB79074.1| putative protein [Arabidopsis thaliana]
 gi|332658957|gb|AEE84357.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 339/722 (46%), Positives = 438/722 (60%), Gaps = 91/722 (12%)

Query: 2   PPQTPQRPPKPYFFYGHRKPSQNRPTVYGGLF--------------SNRQSLRNPN---- 43
           PP    +  KP FF+GHRKPSQNRPTVYGGLF              SN  + R P     
Sbjct: 6   PPNLSDKSLKPNFFHGHRKPSQNRPTVYGGLFSNRQSIPRVSPQPQSNSLAHRTPFDLRK 65

Query: 44  -------------------SASEPHQSPPF---------NVQKWDPHY---LPNQKTQSP 72
                              SA+    SP           N   W P     L   +  +P
Sbjct: 66  WDPETHLPPPSPPSHSTVISAASERLSPIARFVLDAFRKNRNHWGPSVVSELNKLRRVTP 125

Query: 73  PSDPKTFQLQRHLSPIARFI---------------TDAF-----RKNQFQWGPQVVTELS 112
               +  +L    +  A+F                 +AF     R   F+   Q+   + 
Sbjct: 126 SIVAEVLKLGNDAAVAAKFFHWAGKQKGYKHDFAAYNAFAYCLNRNGHFRAADQLPELMD 185

Query: 113 KLRRVTPDLVAEVL---KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFR 169
              R   +   E+L     +N   L   + +   K+ G+K     YN +   L +N  F 
Sbjct: 186 SQGRPPSEKQFEILIRMHADNRRGLRVYYVYEKMKKFGFKPRVFLYNRIMDALVKNGYFD 245

Query: 170 AADQVPELMDSQG-------------------RIAEMLEILEKMRRNLCKPDVFAYTAMI 210
            A  V E     G                   RI EMLEIL++MR NLCKPDVFAYTAMI
Sbjct: 246 LALAVYEDFKEDGLVEESTTFMILVKGLCKAGRIEEMLEILQRMRENLCKPDVFAYTAMI 305

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
           + L +E NLDA LRVW+EM++D ++ DVMAY TL++GLCK GRV RG+ELF EMK   IL
Sbjct: 306 KTLVSEGNLDASLRVWDEMRRDEIKPDVMAYGTLVVGLCKDGRVERGYELFMEMKGKQIL 365

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
           IDR IY VLIEG V +GKV  AC+L +DLVDSGY AD+GIYN++I GLC V Q DKAYKL
Sbjct: 366 IDREIYRVLIEGFVADGKVRSACNLWEDLVDSGYIADIGIYNAVIKGLCSVNQVDKAYKL 425

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK 390
           F+V ++++L PDF T++P++V    M R+ +F  +L ++ +L + V+  L +FF+ L   
Sbjct: 426 FQVAIEEELEPDFETLSPIMVAYVVMNRLSDFSNVLERIGELGYPVSDYLTQFFKLLCAD 485

Query: 391 EERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
           EE+  MALDVF  LK KG+ SV +YNILM AL ++G+++K+L LF +MR L  E +S S+
Sbjct: 486 EEKNAMALDVFYILKTKGHGSVSVYNILMEALYKMGDIQKSLSLFYEMRKLGFEPDSSSY 545

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           SIAI C VE GD+  AC  H KIIEMS VPS+AAY  LTKGLC+IGEIDA M+LVR+CLG
Sbjct: 546 SIAICCFVEKGDVKAACSFHEKIIEMSCVPSIAAYLSLTKGLCQIGEIDAVMLLVRECLG 605

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
           NV SGP EFKYALT+ HVC+   AEK+++V++EM QEG   NEVI  AIISGM KHGT++
Sbjct: 606 NVESGPMEFKYALTVCHVCKGSNAEKVMKVVDEMNQEGVFINEVIYCAIISGMSKHGTIK 665

Query: 571 EARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKLL 630
            AR+VFT L++RK++TEA+ +VY+E+LIE  KKKTADLVLSG+KFFGLESKL+AKGC+LL
Sbjct: 666 VAREVFTELKKRKVMTEADMVVYEEMLIEQTKKKTADLVLSGIKFFGLESKLRAKGCRLL 725

Query: 631 SS 632
            +
Sbjct: 726 DN 727


>gi|297804088|ref|XP_002869928.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315764|gb|EFH46187.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 731

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 291/526 (55%), Positives = 372/526 (70%), Gaps = 19/526 (3%)

Query: 126 LKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG--- 182
           +  +N   L   + +   K+ G+K     YN +   L +N  F  A  V E     G   
Sbjct: 206 MHADNRRGLRVYYVYEKMKKFGFKPRVFLYNRIMDALVKNGYFDLALAVYEDFKEDGLVE 265

Query: 183 ----------------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVW 226
                           RI EMLEIL++MR NLCKPDVFAYTAMI+ L +E NLDA LRVW
Sbjct: 266 ESTTFMILVKGLCKAGRIEEMLEILQRMRENLCKPDVFAYTAMIKTLVSEGNLDASLRVW 325

Query: 227 EEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
           +EMK+D ++ DVMAY TL++GLCK GR+ RG+ELF EMK   ILIDR IY VLIEG V +
Sbjct: 326 DEMKRDEIKPDVMAYGTLVVGLCKDGRIERGYELFMEMKGKQILIDREIYRVLIEGFVAD 385

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
           GKV  ACDL KDLVDSGY ADLGIYN++I GLC V Q DKAY LF+V ++++L PDF T+
Sbjct: 386 GKVRSACDLWKDLVDSGYIADLGIYNAVIKGLCSVNQVDKAYNLFQVAIEEELEPDFETL 445

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKG 406
           +P++V    M R+ +F  LL ++ +L + V   L +FF+ L   EE+  MALDVF+ LK 
Sbjct: 446 SPIMVAYVVMNRLSDFSNLLERIGELGYPVTDYLTQFFKLLCADEEKRTMALDVFDILKT 505

Query: 407 KGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           KG+ SV +YNILM  L ++G+++K+L LF +M+    E +S S+SIA+ C V+ GD+ EA
Sbjct: 506 KGHGSVSVYNILMEVLYKMGDIQKSLSLFYEMKEFGFEPDSSSYSIALCCFVDKGDVQEA 565

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
           C CH KIIEMS+VPS AAY  LTKGLC+IGEIDA M+LVR+CLGNV SGP EFKY L + 
Sbjct: 566 CSCHEKIIEMSRVPSKAAYLSLTKGLCQIGEIDAVMLLVRECLGNVESGPMEFKYVLRVC 625

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
           HVC+   AEK++EV++EM QEG   NEVI  AIISGM KHGT++ AR+VF  L++RK++T
Sbjct: 626 HVCKGSNAEKVMEVVDEMNQEGVSINEVIYCAIISGMSKHGTIKAAREVFAELKKRKVMT 685

Query: 587 EANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKLLSS 632
           EA+ +VYDE+LIE  KKKTADLVLSG+KFFGLESKL+AKGC+LL +
Sbjct: 686 EADMVVYDEMLIEQTKKKTADLVLSGIKFFGLESKLRAKGCRLLDN 731



 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 196/579 (33%), Positives = 307/579 (53%), Gaps = 27/579 (4%)

Query: 2   PPQTPQRPPKPYFFYGHRKPSQNRPTVYGGLFSNRQSLR--NPNSASEP--HQSPPFNVQ 57
           PP    +  KP FFYGHRKPSQNRP VYGGLFS RQSL   +P S S    H++P F+++
Sbjct: 6   PPNLSDKSLKPNFFYGHRKPSQNRPIVYGGLFSTRQSLSRDSPQSPSNAVAHRTP-FDLR 64

Query: 58  KWDPH-YLPNQKTQSPPSDPKTF--QLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKL 114
           KWDP  +LP +++ S P    T        LSPIARF+ DAFRKN+  WGP VV+EL+KL
Sbjct: 65  KWDPETHLPLERSSSSPPSHSTVISAASERLSPIARFVLDAFRKNRNHWGPSVVSELNKL 124

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           RRVTP +VAEVLK+ N+ T A+KFFHWAGKQKGYKH+FA+YNA AYCL+RN  FRAADQ+
Sbjct: 125 RRVTPSIVAEVLKLGNDATAAAKFFHWAGKQKGYKHDFAAYNAFAYCLNRNGHFRAADQL 184

Query: 175 PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
           PELMDSQGR                 P    +  +IR+ A  R       V+E+MKK   
Sbjct: 185 PELMDSQGR----------------PPSEKQFEILIRMHADNRRGLRVYYVYEKMKKFGF 228

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           +  V  Y  ++  L K G       ++ + KE+G++ +   + +L++GL   G++ +  +
Sbjct: 229 KPRVFLYNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRIEEMLE 288

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           +L+ + ++  + D+  Y ++I  L      D + ++++   +D++ PD      L+V   
Sbjct: 289 ILQRMRENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMKRDEIKPDVMAYGTLVVGLC 348

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVP 413
           + GR++  ++L  +M+  +  +  ++ +        + ++  A D++++L   GY + + 
Sbjct: 349 KDGRIERGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACDLWKDLVDSGYIADLG 408

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           IYN ++  L  + +V KA  LF       LE +  + S  +  +V    + +      +I
Sbjct: 409 IYNAVIKGLCSVNQVDKAYNLFQVAIEEELEPDFETLSPIMVAYVVMNRLSDFSNLLERI 468

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            E+   P         K LC   E     + V D L     G     Y + +  + + G+
Sbjct: 469 GELG-YPVTDYLTQFFKLLCADEEKRTMALDVFDILKTKGHGSVSV-YNILMEVLYKMGD 526

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
            +K + +  EM + G  P+    S  +      G ++EA
Sbjct: 527 IQKSLSLFYEMKEFGFEPDSSSYSIALCCFVDKGDVQEA 565


>gi|326493764|dbj|BAJ85344.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 730

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 283/723 (39%), Positives = 400/723 (55%), Gaps = 107/723 (14%)

Query: 6   PQRPPKP-------YFFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSP-----P 53
           P  PP P         + G R+PS  RPTV+GGL ++  S  +P     P  SP     P
Sbjct: 4   PSSPPGPAHCHRRHTIYNGCRRPSPYRPTVHGGLITH-PSATSPGPRFSPSPSPAATTAP 62

Query: 54  FNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSK 113
           F++  WDP          P     T    R LSP+ARF+ +A R++Q +WGP V+ +LSK
Sbjct: 63  FHLPDWDPSSPSQPPRSPPTPSHSTSASSRRLSPLARFLLEALRRHQ-RWGPPVIADLSK 121

Query: 114 LRRVTPDLVAEVL--KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA 171
           LRRV P LVAEVL       P LA  FFHWAG+QKG++H F +++ALA  LS   L  AA
Sbjct: 122 LRRVPPTLVAEVLCAHPPPPPPLALPFFHWAGRQKGFRHCFPAFHALACLLSAAGLPAAA 181

Query: 172 DQVPELMDSQGRIAEM----------------LEILEKMRR-----------NLC----- 199
           DQ+P+L+ S G+                    L  L  +RR           ++C     
Sbjct: 182 DQLPDLIRSHGKPVSHPQLTLLVRLHTAARRPLRALYTLRRFRHEFSVQPQVHVCNRVLG 241

Query: 200 -----------------------KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
                                  +P   ++  ++R L  E   +  L +   M+ ++   
Sbjct: 242 ALTAAGYVEDALKLFDEMAESGIRPMPVSFAIIVRALGQEGKPERILEMIGRMRDEVCRP 301

Query: 237 DVMAYVTLIM-----------------------------------GLCKGGRVVRGHELF 261
           DV  Y TL+                                    GLC  G V +  +LF
Sbjct: 302 DVFVYTTLVKTMVRRGHMEGCIRVWEEMGRDGVEPDSMAYATMVEGLCNAGMVEKAAKLF 361

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             M++ G+L+DR +Y  L+ G V  G+VG  C +LKD+VD+GYRADL  YN +IGGLC +
Sbjct: 362 EGMRKKGLLVDRIVYASLVHGYVAAGRVGDGCRVLKDMVDAGYRADLKTYNILIGGLCGI 421

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
              DKA+K+F++ +Q+DL P   TV+ LLVC A+ G M NFF L+ ++ +L       L 
Sbjct: 422 GLEDKAHKMFQIVLQEDLVPSAETVSQLLVCYADNGDMVNFFGLVDKLVELSLPAVEFLV 481

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
            F      K+ R + A++VF+ L+ KGY SV  YNIL+  LL+I E +KAL LF +M+  
Sbjct: 482 DFLRLFASKDGRELKAVEVFKTLRQKGYCSVNFYNILIENLLKIKEREKALLLFEEMKDS 541

Query: 442 -NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
            + E  S ++S+ I C V+ G+I EAC C+N +++   +PS++AY  L KGLCKIGEI+A
Sbjct: 542 DDCEPESCTYSLMIPCFVDEGNIEEACSCYNSMMKAEWIPSLSAYRSLVKGLCKIGEINA 601

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A+ LV DCLGNV +GP EFKYALT++  CRS + E++++V+ EM + G    E+I SA+I
Sbjct: 602 AVSLVSDCLGNVENGPMEFKYALTVIEACRSKDPERVMKVVVEMIELGYLVEELIFSAVI 661

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLES 620
            G CK+ T   AR+VF+ + +R +++EAN IVY+++L EH+KK TADLV+SGLKFF LES
Sbjct: 662 YGFCKYATSTGAREVFSVMADRDIISEANFIVYEDMLNEHLKKVTADLVISGLKFFNLES 721

Query: 621 KLK 623
           KLK
Sbjct: 722 KLK 724


>gi|414883744|tpg|DAA59758.1| TPA: hypothetical protein ZEAMMB73_211431 [Zea mays]
          Length = 732

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 285/727 (39%), Positives = 413/727 (56%), Gaps = 108/727 (14%)

Query: 3   PQTP-QRPPKPYFFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSP----PFNVQ 57
           P +P  R  +   ++GHR+ S +RPTV GGLF++   LR P++   P  SP     F ++
Sbjct: 6   PSSPTDRRRRHTIYHGHRRASPHRPTVRGGLFTD---LRFPSTIHRPSSSPSTATAFRLR 62

Query: 58  KWDPHYLPNQKTQSPPSDPKTFQLQRH------LSPIARFITDAFRKNQFQWGPQVVTEL 111
            WDPH   +  +   PS P              LSP+ARF+ DA R++Q +WGP VV +L
Sbjct: 63  DWDPHSPSSSSSARSPSPPSASSSSSTSASARRLSPLARFLLDALRRHQ-RWGPPVVADL 121

Query: 112 SKLRRVTPDLVAEVL--KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFR 169
           SKLRRV P LVAEVL  +    P LA  FF WAG+QKG++H F +++ALA  LS   L  
Sbjct: 122 SKLRRVPPSLVAEVLTARPPPPPPLALPFFLWAGRQKGFRHCFPAFHALASLLSAAGLPA 181

Query: 170 AADQVPELMDSQGR------IAEMLEILEKMRRNL--------------CKPDVFA---- 205
           AADQ+P+LM + GR      +  ++ +    RR L               +P V A    
Sbjct: 182 AADQLPDLMRAHGRPISHPQLTLLVRLHTAARRPLRALHALRRFRHEFDVQPQVHACNRV 241

Query: 206 -------------------------------YTAMIRVLAAERNLDACLRVWEEMKKDLV 234
                                          +  M+R LA    +D  L +   M+ ++ 
Sbjct: 242 LGALAAAGHVEDALKLFDEMSEGGVQPIPVTFAIMVRALAHAGMVDRLLEMIGRMRNEVC 301

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL----------- 283
             DV  Y  L+  + + G +     ++ EM+++G+  D   Y  ++ GL           
Sbjct: 302 RPDVFVYTALVKTMVRRGYMDGCMRVWDEMEKDGVEPDTMAYATMVGGLCKAGMVEEAAE 361

Query: 284 ------------------------VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
                                   V  G+VG  C LL +LVD+GYRADLGIYN++I GLC
Sbjct: 362 LFKEMRSKGLLVDRMVYASLIDGYVAVGRVGDGCRLLNELVDAGYRADLGIYNTLIIGLC 421

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
            + + DKA+KLF++ +Q+DL P   TV+PLL C AE G M  FF L+ ++ ++  SV   
Sbjct: 422 GIGREDKAHKLFQIVLQEDLMPSSDTVSPLLACYAEKGEMVTFFGLVNKLAEMGLSVVEM 481

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
           L  F + L GK+ R++ A++VF+ L+ K Y SV IYNIL+  LL+I + KK+L LF +M+
Sbjct: 482 LVDFMKLLAGKDGRVLKAVEVFDALRQKQYCSVGIYNILIENLLKIKDRKKSLLLFEEMQ 541

Query: 440 -GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
             ++ + +S ++S  I C V+ G++ EAC C+N +++ + +PS++AY  L KGLCK+GEI
Sbjct: 542 SSVDFKPDSCTYSHMIPCFVDEGNVKEACSCYNTMMKENWIPSMSAYCVLVKGLCKMGEI 601

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           + A+ LV+DCLGN+ +GP EFKY LTIL  CRS   EK+I V+ EM + GC   E++ SA
Sbjct: 602 NTAISLVKDCLGNIENGPAEFKYTLTILEACRSKRPEKVINVVYEMIEVGCSMEEIVYSA 661

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGL 618
           II G CK+ +  EAR+VFT +R++ +L+EAN IVY+++L EH+KK TADLV+SGLKFF L
Sbjct: 662 IIYGFCKYASSTEARQVFTIMRDQNILSEANFIVYEDMLNEHLKKATADLVISGLKFFDL 721

Query: 619 ESKLKAK 625
           ESKLK +
Sbjct: 722 ESKLKWR 728


>gi|357119238|ref|XP_003561352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Brachypodium distachyon]
          Length = 732

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 275/724 (37%), Positives = 403/724 (55%), Gaps = 101/724 (13%)

Query: 2   PPQTPQRPPKPYFFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSP-------PF 54
           PP    R  K   ++GHR+ S +RPTV GGL ++ ++       S    S        PF
Sbjct: 6   PPAPADRRRKHTIYHGHRRASPHRPTVRGGLLTHLRTTSPRPHPSPSSSSSAAATTTVPF 65

Query: 55  NVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKL 114
            +  WDP          P     T    R LSP+ARF+ DA R++Q +WGP VV +LSKL
Sbjct: 66  RLPDWDPSSPSPSPPSPPTPSHSTSAASRRLSPLARFLLDALRRHQ-RWGPPVVADLSKL 124

Query: 115 RRVTPDLVAEVLKVENNPTLASK--FFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAAD 172
           RRV P LVAEVL     P       FFHWAG+QKG++H F +++ALA  LS   L  AAD
Sbjct: 125 RRVPPTLVAEVLSAHPPPPPPLALPFFHWAGRQKGFRHCFPAFHALASLLSAAGLPAAAD 184

Query: 173 QVPELMDSQGR------IAEMLEILEKMRRNL--------------CKPDVFAYTAMIRV 212
           Q+P+L+ + G+      +  ++ +    RR L               +P V A   ++  
Sbjct: 185 QLPDLIRAHGKPVSHPQLTLLVRLHTAARRPLRALYTLRRFRHEFSVQPQVHACNRVLGA 244

Query: 213 LAAERNLDACLRVWEE-----------------------------------MKKDLVEAD 237
           LAA  +++  L++++E                                   M+ ++   D
Sbjct: 245 LAAAGHVEDALKLFDEMSEGGVRPMPVTFAIIVRALGHAGMTERILEMIGRMRDEVCRPD 304

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGI---------------------------- 269
           V  Y  L+  + + G +     ++ EM  +G+                            
Sbjct: 305 VFVYTALVKTMMRRGHIEGCIRVWEEMGTDGVEPDAMAYATMVGGLCNAGMVEQAAKLFE 364

Query: 270 -------LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
                  L+DR ++  L++G V +G+VG  C +LK++VD+GYRADLG YN++IGGLC + 
Sbjct: 365 EMRKKGLLVDRTVFASLVDGYVADGRVGDGCRVLKEMVDAGYRADLGTYNTLIGGLCGIG 424

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           + DKAYK+F++ +Q++L P   TV+ LLVC A+ G M   F L+ ++ +L+      L  
Sbjct: 425 REDKAYKMFQIILQEELVPSSETVSQLLVCYADKGEMIKIFGLVDKLVELRLPATDYLVD 484

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL- 441
           F +    K+ R + A++VF+ ++ +GY SV  YNI++  LL+I E KKAL LF +M+G  
Sbjct: 485 FLKLFACKDGRELKAVEVFDTMRQRGYYSVSTYNIIIENLLKIKERKKALLLFEEMQGSD 544

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
           + +  S ++S  I C VE G+I EAC C+N +++   +PS++AY  L KGLCKIGEI+AA
Sbjct: 545 DCKPESCTYSHMIPCFVEEGNIEEACSCYNSMMKAEWIPSISAYCSLVKGLCKIGEINAA 604

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           + LV DCLGNV +GP EFKY LTIL  CRS   EK+++V++EM + G    E+I  AII 
Sbjct: 605 VSLVTDCLGNVENGPMEFKYTLTILEACRSKSPEKVMKVVDEMIELGYSVEEIIFCAIIY 664

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESK 621
           G CK+ T  EARKVF+ +R+R +++EAN IVY+++L EH+KK TADLV+SGLKFF LESK
Sbjct: 665 GFCKYATSTEARKVFSVMRDRNIISEANFIVYEDMLNEHLKKVTADLVISGLKFFNLESK 724

Query: 622 LKAK 625
           LK +
Sbjct: 725 LKWR 728


>gi|242043100|ref|XP_002459421.1| hypothetical protein SORBIDRAFT_02g004410 [Sorghum bicolor]
 gi|241922798|gb|EER95942.1| hypothetical protein SORBIDRAFT_02g004410 [Sorghum bicolor]
          Length = 735

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 282/715 (39%), Positives = 405/715 (56%), Gaps = 98/715 (13%)

Query: 8   RPPKPYFFYGHRKPSQNRPTVYGGLFSN-RQSLRNPNSASEPHQSPPFNVQKWDPHYLPN 66
           R  +   ++GHR+ S +RPTV GGLF++ R     P     P  +  F ++ WDPH   +
Sbjct: 18  RRRRHTIYHGHRRASPHRPTVRGGLFTDLRFPSPIPRPPPSPATATAFRLRDWDPHSPYS 77

Query: 67  QKTQSPPSDPKTFQLQ---RHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVA 123
             +   PS   +       R LSP+ARF+ DA R++Q +WGP VV +LSKLRRV P LVA
Sbjct: 78  PSSAPSPSASASSSTSASARRLSPLARFLLDALRRHQ-RWGPPVVADLSKLRRVPPSLVA 136

Query: 124 EVL--KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ 181
           EVL  +    P LA  FF WAG+QKG++H F +++ALA  LS   L  AADQ+P+LM + 
Sbjct: 137 EVLTARPPPPPPLALPFFLWAGRQKGFRHCFPAFHALASLLSAAGLPAAADQLPDLMRAH 196

Query: 182 G-------------------RIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDA 221
           G                   R    L  L + R     +P V A   ++  LAA  +++ 
Sbjct: 197 GKPVSHSQLTLLVRLHTAARRPLRALHALRRFRHEFDVQPQVHACNRVLGALAAAGHVED 256

Query: 222 CLRVWEE-----------------------------------MKKDLVEADVMAYVTLIM 246
            L++++E                                   M+ ++   DV  Y  L+ 
Sbjct: 257 ALKLFDEMSEGGVQPIPVTFAIVVRALAHAGMTDRLLEMIGRMRNEVCRPDVFVYTALVK 316

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGV---------------------------- 278
            + + G +     ++ EM+++G+  D   Y                              
Sbjct: 317 TMVRRGYMDGCIRVWEEMEKDGVEPDTMAYATMVGGFCNTGMVEEAAELFKEMRSKGLLV 376

Query: 279 -------LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
                  LI+G V  G+VG  C LLK+LVD+G RADLGIYN++I GLC + + DKA+ LF
Sbjct: 377 ARSVYASLIDGYVAAGRVGDGCRLLKELVDAGSRADLGIYNTLISGLCGIGREDKAHNLF 436

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE 391
            + +Q++L P   TV+PLL   AE G M  FF L+ ++ +L   V   L  F +   GK+
Sbjct: 437 RIVLQEELMPSSDTVSPLLARYAEKGEMVTFFGLVNKLAELGLPVIEMLVDFMKLFAGKD 496

Query: 392 ERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR-GLNLEVNSLSF 450
            R + A++VF+ LK K Y SV IYNIL+  LL+I + KK+L LF +M+  +N + +S ++
Sbjct: 497 GRELKAMEVFDALKEKQYCSVGIYNILIENLLKIKDRKKSLLLFEEMQSSVNFKPDSCTY 556

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           S  I C ++ G++ EAC C+N +++ + +PS++AY  L KGLCK+GEI+AA+ LV+DCLG
Sbjct: 557 SHMIPCFMDEGNVEEACSCYNTVMKENWIPSMSAYCALVKGLCKMGEINAAISLVKDCLG 616

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
           NV +GPTEFKY LTIL  CRS   EK+I V+NEM + GC   E++ SAII G CK+ +  
Sbjct: 617 NVENGPTEFKYTLTILEACRSKSPEKVINVVNEMIEVGCSMEEIVYSAIIYGFCKYASST 676

Query: 571 EARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAK 625
           EAR+VFT +R+R +L+EAN IVY+++L EH+KK TADLV+SGLKFF LESKLK +
Sbjct: 677 EARQVFTIMRDRNILSEANFIVYEDMLNEHLKKATADLVISGLKFFDLESKLKWR 731


>gi|125557435|gb|EAZ02971.1| hypothetical protein OsI_25111 [Oryza sativa Indica Group]
          Length = 728

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 272/712 (38%), Positives = 400/712 (56%), Gaps = 108/712 (15%)

Query: 15  FYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSPP-------FNVQKWDPHYLPNQ 67
           ++GHR+PS +RPTV GG+FS    LR   +AS   + P        F +  WDP    + 
Sbjct: 22  YHGHRRPSPHRPTVRGGVFSY---LRATTAASSQPRPPSSSSSSAPFRLADWDP----SS 74

Query: 68  KTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVL- 126
            + S    P      R LSP+ARF+ DA R++Q +WGP VV EL+KLRRV P+LVAEVL 
Sbjct: 75  SSSSSTPSPSATAAARRLSPLARFLLDALRRHQ-RWGPPVVAELTKLRRVAPELVAEVLS 133

Query: 127 -KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG--- 182
            +    P LA  FF WAG+QKG++H F +++ALA  LS   L  AADQ+P+LM + G   
Sbjct: 134 ARPPPPPPLALPFFLWAGRQKGFRHCFPAFHALASLLSAAGLPAAADQLPDLMRAHGKPV 193

Query: 183 ----------------RIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRV 225
                           R    L  L + R     +P+V A   ++  LAA  ++D  L++
Sbjct: 194 SHSQLNLLVRLHTGARRPLRALHALRRFRHEFSVQPEVHACNRVLGALAAAGHVDDTLKL 253

Query: 226 WEE-----------------------------------MKKDLVEADVMAYVTLIMGLCK 250
           ++E                                   M+ ++   DV  Y  L+  + +
Sbjct: 254 FDEMSHCSVRPMPVTFAIMVRALARAGMTDKLLEMIGRMRAEVCRPDVFVYTALVKTMVR 313

Query: 251 GGRVVRGHELFREMKENGI------------------LIDRA-----------------I 275
            G +     ++ EM+ + +                  ++++A                 +
Sbjct: 314 WGHMEGCIRVWEEMRRDHVDPDTMAYTTMIAGLCNAGMVEKAEELFGEMRRKGLLVDRMV 373

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           Y  LI+G V  G+V   C +LK++VD+GYRADLGIYN++IGGLC +++ DKA+K+F++ V
Sbjct: 374 YASLIDGYVSTGRVSDGCRVLKEMVDAGYRADLGIYNTLIGGLCEIEREDKAHKMFQIVV 433

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM 395
           Q+DL P   TV+PLL   A+ G M  FF L+ ++ +L   +   L  F +    K    +
Sbjct: 434 QEDLIPSSETVSPLLARYADKGEMVKFFGLVDKLVELSLPIVEILVDFLKLFACKSGNEL 493

Query: 396 MALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL-NLEVNSLSFSIAI 454
            A++VF   + +G+ SV IYNIL+  LL+I E KKAL LF +M+   + + +S ++S  I
Sbjct: 494 KAVEVFNAFRRRGHYSVGIYNILIENLLKIKERKKALVLFEEMQSSDDCKPDSCTYSHMI 553

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
            C V+  +I EAC C+N +++   +PS++AY  L KGLCK GEI+AA+ LV+DCLGNV +
Sbjct: 554 PCFVDEENIEEACSCYNLMMKAVWIPSISAYCALVKGLCKKGEINAAISLVKDCLGNVEN 613

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
           GP EFKY LTIL  C+S   EK+I+V++EM + G    E+I SAII G CK+ +  EARK
Sbjct: 614 GPMEFKYTLTILEACQSKSPEKVIKVVDEMIELGYSIEEIIYSAIIYGFCKYASSTEARK 673

Query: 575 VFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKG 626
           V + +R+R +++EAN IVY+++L EH+K  TADLV+SGLKF  LESKLK + 
Sbjct: 674 VLSTMRDRNIISEANYIVYEDMLNEHLKNVTADLVISGLKFLDLESKLKWRS 725


>gi|115470867|ref|NP_001059032.1| Os07g0179000 [Oryza sativa Japonica Group]
 gi|34393469|dbj|BAC83029.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|50509181|dbj|BAD30332.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610568|dbj|BAF20946.1| Os07g0179000 [Oryza sativa Japonica Group]
 gi|125599319|gb|EAZ38895.1| hypothetical protein OsJ_23314 [Oryza sativa Japonica Group]
 gi|215712269|dbj|BAG94396.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767408|dbj|BAG99636.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 727

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 270/712 (37%), Positives = 394/712 (55%), Gaps = 109/712 (15%)

Query: 15  FYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSPP-------FNVQKWDPHYLPNQ 67
           ++GHR+PS +RPTV GG+FS+   LR   +AS   + P        F +  WD       
Sbjct: 22  YHGHRRPSPHRPTVRGGVFSD---LRATTAASSQPRPPSSSSSSAPFRLADWD-----PS 73

Query: 68  KTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVL- 126
            + S    P      R LSP+ARF+ DA  ++Q +WGP VV EL+KLRRV P+LVAEVL 
Sbjct: 74  SSSSSTPSPSATAAARRLSPLARFLLDALHRHQ-RWGPPVVAELTKLRRVAPELVAEVLS 132

Query: 127 -KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG--- 182
            +    P LA  FF WAG+QKG++H F +++ALA  LS   L  AADQ+P+LM + G   
Sbjct: 133 ARPPPPPPLALPFFLWAGRQKGFRHCFPAFHALASLLSAAGLPAAADQLPDLMRAHGKPV 192

Query: 183 ----------------RIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRV 225
                           R    L  L + R     +P+V A   ++  LAA  ++D  L++
Sbjct: 193 SHSQLNLLVRLHTGARRPLRALHALRRFRHEFSVQPEVHACNRVLGALAAAGHVDDTLKL 252

Query: 226 WEE-----------------------------------MKKDLVEADVMAYVTLIMGLCK 250
           ++E                                   M+ ++   DV  Y  L+  + +
Sbjct: 253 FDEMSHCSVRPMPVTFAIMVRALARAGMTDKLLEMIGRMRAEVCRPDVFVYTALVKTMVR 312

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGL--------------------------- 283
            G +     ++ E++ + +  D   Y  +I GL                           
Sbjct: 313 WGHMEGCIRVWEEIRRDHVDPDTMAYTTMIAGLCNAGMVEKAEELFGEMRRKGLLVDRMV 372

Query: 284 --------VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
                   V  G+V   C +LK++VD+GYRADLGIYN++IGGLC +++ DKA+K+F++ V
Sbjct: 373 YASLIDGYVSTGRVSDGCRVLKEMVDAGYRADLGIYNTLIGGLCEIEREDKAHKMFQIVV 432

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM 395
           Q+DL P   TV+PLL   A+ G M  FF L+ ++ +L   +   L  F +    K    +
Sbjct: 433 QEDLIPSSETVSPLLARYADKGEMVKFFGLVDKLVELSLPIVEILVDFLKLFACKSGNEL 492

Query: 396 MALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL-NLEVNSLSFSIAI 454
            A++VF   + +G+ SV IYNIL+  LL+I E KKAL LF +M+   + + +S ++S  I
Sbjct: 493 KAVEVFNAFRRRGHYSVGIYNILIENLLKIKERKKALVLFEEMQSSDDCKPDSCTYSHMI 552

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
            C V+ G+I EAC C+N +++   +PS++AY  L KGLCK GEI+AA+ LV+DCLGNV +
Sbjct: 553 PCFVDEGNIEEACSCYNLMMKAVWIPSISAYCALVKGLCKKGEINAAISLVKDCLGNVEN 612

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
           GP EFKY LTIL  C+S   EK+I+V++EM + G    E+I SAII G CK+ +  EARK
Sbjct: 613 GPMEFKYTLTILEACQSKSPEKVIKVVDEMIELGYSIEEIIYSAIIYGFCKYASSTEARK 672

Query: 575 VFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKG 626
           V + +R+R +++EAN IVY+++L EH+K  TADLV+SGLKF  LESKLK + 
Sbjct: 673 VLSTMRDRNIISEANYIVYEDMLNEHLKNVTADLVISGLKFLDLESKLKWRS 724


>gi|255635248|gb|ACU17978.1| unknown [Glycine max]
          Length = 234

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 137/227 (60%), Positives = 166/227 (73%), Gaps = 1/227 (0%)

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           MK  G L+DR IYG L+E  V EGKV  A DLLKDLV SGYRADLGIY  +I GLC + +
Sbjct: 1   MKGKGCLVDRVIYGALVEAFVAEGKVELAFDLLKDLVSSGYRADLGIYICLIEGLCNLNR 60

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
             KAYKLF++TV++ L PDF TV PLLV  AE  RM+ F KLL QM+KL F V ADL KF
Sbjct: 61  VQKAYKLFQLTVREGLEPDFLTVKPLLVAYAEANRMEEFCKLLEQMQKLGFPVIADLSKF 120

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           F  LV K+  I MAL+ F +LK KG+ SV IYNI M +L +IGEVKKAL LF +M+GL+L
Sbjct: 121 FSVLVEKKGPI-MALETFGQLKEKGHVSVEIYNIFMDSLHKIGEVKKALSLFDEMKGLSL 179

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           + +S ++  AI C V+ G+I EAC CHN+IIEMS +PSVAAY+ LTK
Sbjct: 180 KPDSFTYCTAILCLVDLGEIKEACACHNRIIEMSCIPSVAAYSSLTK 226



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 76/197 (38%), Gaps = 37/197 (18%)

Query: 391 EERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
           E ++ +A D+ ++L   GY + + IY  L+  L  +  V+KA  LF       LE + L+
Sbjct: 23  EGKVELAFDLLKDLVSSGYRADLGIYICLIEGLCNLNRVQKAYKLFQLTVREGLEPDFLT 82

Query: 450 FSIAIQCHVESGDILEAC----------------------------------ECHNKIIE 475
               +  + E+  + E C                                  E   ++ E
Sbjct: 83  VKPLLVAYAEANRMEEFCKLLEQMQKLGFPVIADLSKFFSVLVEKKGPIMALETFGQLKE 142

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
              V SV  YN     L KIGE+  A+ L  D +  ++  P  F Y   IL +   GE +
Sbjct: 143 KGHV-SVEIYNIFMDSLHKIGEVKKALSLF-DEMKGLSLKPDSFTYCTAILCLVDLGEIK 200

Query: 536 KIIEVLNEMTQEGCPPN 552
           +     N + +  C P+
Sbjct: 201 EACACHNRIIEMSCIPS 217


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 143/481 (29%), Positives = 229/481 (47%), Gaps = 40/481 (8%)

Query: 130 NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRN--------------------NLFR 169
           ++P  A +FFHWA KQ+G+ HN  +YN L   L R                     N+F 
Sbjct: 2   SDPDAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFT 61

Query: 170 AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
            A  +  L  S G + +  E+LE+MR +   PD   Y  +I  L   RN    L  +  M
Sbjct: 62  YAVVIQGLCKS-GDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSM 120

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
           +    E +V+ +  +I GLCK  R+      F +MK+ G + +   Y VLI G     KV
Sbjct: 121 E---CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKV 177

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            +A  LLK++ +SG   ++  Y+++I G CR  + D AYKLF   V++   P+  T N L
Sbjct: 178 HRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTL 237

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE-LKG 406
           L      G MD  ++LL +M +    +  D   +   + G  K  +I MAL VFE+   G
Sbjct: 238 LSGLCRNGLMDEAYELLDEMRER--GLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNG 295

Query: 407 KGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
                V  Y+ L+  L + G + +A  LF KMR  + E + ++F+  +    +   + EA
Sbjct: 296 DCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEA 355

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKY 521
            +    + + +  P+V  Y+ L  GLCK G++  A      M+VR    NV +      Y
Sbjct: 356 QQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVT------Y 409

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              I   C +   +  + ++ EMT  GC P+ +  + +I G+CK G   EA ++F +++ 
Sbjct: 410 NSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKA 469

Query: 582 R 582
           +
Sbjct: 470 K 470



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 122/472 (25%), Positives = 191/472 (40%), Gaps = 63/472 (13%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS----------------------QG 182
           + G   N  +YN L   L RN L    D+  EL+D                        G
Sbjct: 224 ENGCMPNLVTYNTLLSGLCRNGLM---DEAYELLDEMRERGLQPDKFSYDTLMAGLCKTG 280

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           +I   L++ E      C PDV AY+ +I  L     LD   +++E+M+++  E DV+ + 
Sbjct: 281 KIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFT 340

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            L+ GLCKG R+    ++   M++     +   Y  LI+GL   G+V  A ++ K ++  
Sbjct: 341 ALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVR 400

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   ++  YNS+I G C     D A  L E        PD  T N L+    + GR    
Sbjct: 401 GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEA 460

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422
            +L   M K KF                                     V  Y+ L+G  
Sbjct: 461 NRLFGDM-KAKFC---------------------------------NPDVITYSCLIGGF 486

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            ++  +  A  LF  M    +  + ++FS  ++ +  +G + +A     +++     P V
Sbjct: 487 CKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDV 546

Query: 483 AAYNCLTKGLCKIGE-IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
             Y  L  G CK+G  ++A  +L R  +      P    Y   I   CR+G+      +L
Sbjct: 547 YTYTSLVDGFCKVGRMVEARRVLKR--MAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLL 604

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
            EM   G  PN +   ++I G C  G LEEARK+   L ER    +A+   Y
Sbjct: 605 EEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERL-ERDENCKADMFAY 655



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 203/453 (44%), Gaps = 43/453 (9%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E      KM++    P+ + Y  +I        +     + +EMK+  +  +V+ Y 
Sbjct: 141 RLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYS 200

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           T+I G C+  +V   ++LFR+M ENG + +   Y  L+ GL   G + +A +LL ++ + 
Sbjct: 201 TVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRER 260

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + D   Y++++ GLC+  + D A K+FE     D  PD    + L+    + GR+D  
Sbjct: 261 GLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEA 320

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILM 419
            KL  +M   + S   D+  F   + G  K +R+  A  V E ++ +  + +V  Y+ L+
Sbjct: 321 CKLFEKMR--ENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLI 378

Query: 420 GALLEIGEVKKALYLFGKM--RGLNLEV---NSLSFSIAIQCHVESGDIL----EACECH 470
             L + G+V+ A  +F +M  RG+   V   NSL     +   V+S  +L     A  C 
Sbjct: 379 DGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCL 438

Query: 471 NKIIEMSQV--------------------------PSVAAYNCLTKGLCKIGEIDAAMML 504
             II  + +                          P V  Y+CL  G CK+  ID A  L
Sbjct: 439 PDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 498

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
             D L   A  P    ++  +   C +G  +    +L EM    C P+    ++++ G C
Sbjct: 499 FDDMLKQ-AVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFC 557

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           K G + EAR+V   + +R    + N + Y  ++
Sbjct: 558 KVGRMVEARRVLKRMAKRG--CQPNVVTYTALI 588



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/429 (22%), Positives = 192/429 (44%), Gaps = 26/429 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K+ G   N  +Y+ + +   R                Q ++    ++  +M  N C P++
Sbjct: 188 KESGLAPNVVTYSTVIHGFCR----------------QTKVDTAYKLFRQMVENGCMPNL 231

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  ++  L     +D    + +EM++  ++ D  +Y TL+ GLCK G++    ++F +
Sbjct: 232 VTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFED 291

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
                   D   Y  LI GL   G++ +AC L + + ++    D+  + +++ GLC+  +
Sbjct: 292 NSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDR 351

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
             +A ++ E     +  P+  T + L+    + G++ +  ++  +M  +   +  ++  +
Sbjct: 352 LQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRM--IVRGIEPNVVTY 409

Query: 384 FEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
              + G      +  AL + EE+   G    +  YN L+  L + G   +A  LFG M+ 
Sbjct: 410 NSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKA 469

Query: 441 --LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
              N +V + S  I   C +E  D+  A    + +++ + +P V  ++ L +G C  G +
Sbjct: 470 KFCNPDVITYSCLIGGFCKLERIDM--ARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLV 527

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D A  L+ + + +  S P  + Y   +   C+ G   +   VL  M + GC PN V  +A
Sbjct: 528 DDAERLLEEMVASDCS-PDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTA 586

Query: 559 IISGMCKHG 567
           +I   C+ G
Sbjct: 587 LIDAFCRAG 595



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/439 (22%), Positives = 173/439 (39%), Gaps = 68/439 (15%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ------------- 181
           A K F    ++   + +  ++ AL   L + +  + A QV E M+ +             
Sbjct: 320 ACKLFEKM-RENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLI 378

Query: 182 ------GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
                 G++ +  E+ ++M     +P+V  Y ++I        +D+ L + EEM      
Sbjct: 379 DGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCL 438

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            D++ Y TLI GLCK GR    + LF +MK      D   Y  LI G     ++  A  L
Sbjct: 439 PDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 498

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
             D++      D+  +++++ G C     D A +L E  V  D +PD  T   L+    +
Sbjct: 499 FDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCK 558

Query: 356 MGRMDNFFKLLAQMEKLK-----FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS 410
           +GRM    ++L +M K        +  A ++ F      +  +  +A  + EE+ G G  
Sbjct: 559 VGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFC-----RAGKPTVAYRLLEEMVGNGVQ 613

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKM-RGLNLEVNSLSFSIAIQCHVESGDILEACE 468
            +V  Y  L+G     G++++A  +  ++ R  N + +  ++ + +     +G +  A E
Sbjct: 614 PNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALE 673

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-------------------------- 502
               I +    P    Y  L +GLC+  E+  AM                          
Sbjct: 674 LLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQEL 733

Query: 503 ----------MLVRDCLGN 511
                      L  + LGN
Sbjct: 734 AREGRHEEANALADELLGN 752


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 154/553 (27%), Positives = 246/553 (44%), Gaps = 41/553 (7%)

Query: 103 WGPQVVTELSKL-RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           WGP +   LS L  +  P+LV  VLK   +   A  +F WA KQ    H   +YN+L   
Sbjct: 75  WGPTLENSLSALGEKPLPELVIGVLKRLKDANTAVNYFQWAEKQTEKVHCPEAYNSLLMV 134

Query: 162 LSRNNLFRAADQVPELMDSQG-------------------RIAEMLEILEKMRRNLCKPD 202
           ++RN  F   +++ E M   G                   ++ E  +I++ MR+   +P 
Sbjct: 135 MARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPA 194

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
             AYT +I  L+  R  D  L ++ +M++   E +V  + TLI    + GRV     L  
Sbjct: 195 FSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLD 254

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EMK N +  D  +Y V I+     GKV  +     ++   G   D   Y S+IG LC+  
Sbjct: 255 EMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKAN 314

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE- 381
           + D+A +LFE   Q+   P     N +++     G+ D  + LL + +K K S+ + +  
Sbjct: 315 RLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLL-ERQKAKGSIPSVIAY 373

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
                 +GK+ R+  AL +FEE+K     +VP YNIL+  L   G++  AL +   M   
Sbjct: 374 NCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERA 433

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            L  N L+ +I I    ++  + EAC     + +    P+   ++ L  GL K G +D A
Sbjct: 434 GLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDA 493

Query: 502 MMLVR---DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
             L     DC G+V   P    Y   I    + G  E   ++  EM   GC P+  + + 
Sbjct: 494 YSLYEKMLDC-GHV---PGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINT 549

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL--KFF 616
            +  + K G  E+ R +F  +     + +A +     ILI         LV +GL  + +
Sbjct: 550 YMDCVFKAGETEKGRALFREINAHGFIPDARSY---SILIH-------GLVKAGLANETY 599

Query: 617 GLESKLKAKGCKL 629
            L   +K +GC L
Sbjct: 600 ELFYAMKEQGCVL 612



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 173/405 (42%), Gaps = 10/405 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ +   + EKM      P    YT++IR        +   ++++EM       D+   
Sbjct: 488 GRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLI 547

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T +  + K G   +G  LFRE+  +G + D   Y +LI GLV  G   +  +L   + +
Sbjct: 548 NTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKE 607

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   YN++I G C+  + +KAY+L E        P   T   ++   A++ R+D 
Sbjct: 608 QGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDE 667

Query: 362 FFKLLAQME----KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYN 416
            + L  + +    KL   V + L   F    GK  RI  A  + EEL  KG + +V  +N
Sbjct: 668 AYMLFEEAKSNGIKLNVVVYSSLIDGF----GKVGRIDEAYLIMEELMQKGLTPNVYTWN 723

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+ AL++  E+ +AL  F  M+ L    N +++SI I          +A     ++ ++
Sbjct: 724 CLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKL 783

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P+   Y  +  GL K G I  A  L      N    P    Y   I  +  + +A  
Sbjct: 784 GLKPNTITYTTMISGLAKAGNILEASGLFSRFKAN-GGIPDSASYNAMIEGLSSANKAMD 842

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              +  E   +GC  +   C  ++  + K   LE+A  V   L+E
Sbjct: 843 AYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQAAIVGAVLKE 887


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 232/494 (46%), Gaps = 35/494 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG------------------RIA 185
           ++ G+  N  SYN L + L ++ L R A ++   M  +G                  R  
Sbjct: 186 REAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDT 245

Query: 186 EMLE-ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           E ++ +LE+M     KP+++ YT  IRVL     +D   R+ + M+ D    DV+ Y  L
Sbjct: 246 ETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVL 305

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC  G++    ELF +MK +    DR  Y  +++     G +G+  +   ++   GY
Sbjct: 306 IDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGY 365

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  +  ++  LC+    D+A+ L +V  +  + P+  T N L+     + R+D+   
Sbjct: 366 APDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALD 425

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
           L   ME L     A     F    GK  R   AL+ FE++K +G + ++   N  + +L 
Sbjct: 426 LFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLA 485

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           E+G +++A  +F +++   L  +S+++++ ++C+ ++G + EA E  + + E    P + 
Sbjct: 486 EMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDII 545

Query: 484 AYNCLTKGLCKIGEIDAAM-MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             N L   L K G +D A  M  R  L ++   PT   Y   I  + + G+ ++ +E+  
Sbjct: 546 VINSLINTLYKAGRVDEAWKMFCR--LKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFA 603

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIVY------ 593
            MT  GCPPN +  + I+  +CK+  ++ A K+   +     + +    NTI++      
Sbjct: 604 SMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEK 663

Query: 594 ---DEILIEHMKKK 604
              D I + H  KK
Sbjct: 664 RVSDAIWLFHQMKK 677



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 115/507 (22%), Positives = 201/507 (39%), Gaps = 93/507 (18%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K +G   N  + NA  Y L+                  GR+ E   I  +++ N   PD 
Sbjct: 466 KIRGIAPNIVACNASLYSLAE----------------MGRLREAKVIFNRLKSNGLAPDS 509

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  M++  +    +D  + +  +M ++  E D++   +LI  L K GRV    ++F  
Sbjct: 510 VTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCR 569

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +K+  +      Y  LI GL  EG+V +A +L   +  +G   +   +N+I+  LC+  +
Sbjct: 570 LKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDE 629

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL----------- 372
            D A K+       +  PD  T N ++       R+ +   L  QM+K+           
Sbjct: 630 VDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKMLTPDCVTLCTL 689

Query: 373 ------------KFSVAADL---------EKFFEFLVG---------------------- 389
                        F +A D           +F+E L+G                      
Sbjct: 690 LPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFGDRLVCGR 749

Query: 390 ----------------KEERIMMALDVF----EELKGKGYSSVPIYNILMGALLEIGEVK 429
                           K ++ ++A  VF    +EL  K   ++  YN L+   L +   +
Sbjct: 750 VCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVK--PTLESYNFLIEGFLGVHNDE 807

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
            A  LF +M+      +  ++++ +  H +SG I E  E + ++I  S  P+   +N + 
Sbjct: 808 MAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIII 867

Query: 490 KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
             L K   +D A+ L  D +    S PT   Y   +  + +SG  E+  E+  EM   GC
Sbjct: 868 ANLVKSNSLDKALDLFYDLVSGDFS-PTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGC 926

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVF 576
            PN  I + +I+G  K G +  A ++F
Sbjct: 927 RPNNAIYNILINGFGKTGDVNTACELF 953



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 111/485 (22%), Positives = 199/485 (41%), Gaps = 58/485 (11%)

Query: 151  NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
            N  ++N +  CL +N+    A                L++L KM    C PDV  +  +I
Sbjct: 613  NTITFNTILDCLCKNDEVDLA----------------LKMLYKMTTMNCMPDVLTFNTII 656

Query: 211  RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN-GI 269
              L  E+ +   + ++ +MKK ++  D +   TL+ G+ K G +    ++  +     G+
Sbjct: 657  HGLVIEKRVSDAIWLFHQMKK-MLTPDCVTLCTLLPGVVKNGLMEDAFKIAEDFVHRLGV 715

Query: 270  LIDRAIYGVLIEGLVGE---------------GKVGKACDLLKDLV-------------- 300
             +DR  +  L+ G++ +               G+V K   +L  ++              
Sbjct: 716  YVDRRFWEDLMGGILTQAGTEKTILFGDRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQS 775

Query: 301  -------DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
                   + G +  L  YN +I G   V   + A+ LF        APD  T N LL   
Sbjct: 776  VFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAH 835

Query: 354  AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
             + G+++  F+L  QM                  + K   +  ALD+F +L    +S  P
Sbjct: 836  GKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTP 895

Query: 414  -IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
              Y  L+  LL+ G +++A  LF +M       N+  ++I I    ++GD+  ACE   +
Sbjct: 896  CTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKR 955

Query: 473  IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
            ++     P + +Y  L   LC+ G +D A+      L           Y L I  + RS 
Sbjct: 956  MVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEK-LKQTGLYLDSIAYNLMIDGLGRSH 1014

Query: 533  EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
              E+ + + +EM   G  P+    +++I  +   G +E+A K++  L+   L  E N   
Sbjct: 1015 RIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGL--EPNVFT 1072

Query: 593  YDEIL 597
            Y+ ++
Sbjct: 1073 YNALI 1077



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 166/388 (42%), Gaps = 63/388 (16%)

Query: 122  VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSRN-----NLF---RAA 171
            + +VL       +A   F    K+ G K    SYN L   +    N     NLF   + A
Sbjct: 760  IIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNA 819

Query: 172  DQVPE------LMDSQGR---IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
               P+      L+D+ G+   I E+ E+ E+M  + CKP+   +  +I  L    +LD  
Sbjct: 820  GCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKA 879

Query: 223  LRVWEEMKKDLVEADVM----AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
            L ++     DLV  D       Y  L+ GL K GR+    ELF EM + G   + AIY +
Sbjct: 880  LDLF----YDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNI 935

Query: 279  LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
            LI G    G V  AC+L K +V  G R DL  Y S++G LC   + D A   FE   Q  
Sbjct: 936  LINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTG 995

Query: 339  LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL 398
            L  D    N ++         D                           +G+  RI  AL
Sbjct: 996  LYLDSIAYNLMI---------DG--------------------------LGRSHRIEEAL 1020

Query: 399  DVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
             +++E++ +G +  +  YN L+  L   G V++A  L+ +++ + LE N  +++  I+ +
Sbjct: 1021 TLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGY 1080

Query: 458  VESGDILEACECHNKIIEMSQVPSVAAY 485
              SG+   A   + +++     P+   +
Sbjct: 1081 SMSGNSDSAYAVYKRMMVGGCSPNTGTF 1108



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/390 (20%), Positives = 177/390 (45%), Gaps = 16/390 (4%)

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           M+ +L   R +   + V+  M+  +++ D+  Y+ +  GL   G + +    F +M+E G
Sbjct: 130 MLEILRIHRRVGDMVVVFNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAG 189

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
             ++   Y  LI  L+  G   +A ++ + +V  G +  L  +++++    + +  +   
Sbjct: 190 FHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVK 249

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-------LKFSVAADLE 381
            L E      L P+  T    +      GR+D   +++ +ME        + ++V  D  
Sbjct: 250 SLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLID-- 307

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRG 440
                 +    ++  A+++F ++K   +    + Y  ++    + G++ +    + +M  
Sbjct: 308 -----ALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEA 362

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
                + ++F+I +    ++G+I EA    + + +   +P++  YN L  GL ++  +D 
Sbjct: 363 DGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDD 422

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A+ L  + +  +   PT + Y L I    +SG ++K +E   +M   G  PN V C+A +
Sbjct: 423 ALDLFNN-METLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASL 481

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             + + G L EA+ +F  L+   L  ++ T
Sbjct: 482 YSLAEMGRLREAKVIFNRLKSNGLAPDSVT 511



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 149/336 (44%), Gaps = 51/336 (15%)

Query: 190  ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
            +  +M+   C PDVF Y  ++        ++    ++E+M     + + + +  +I  L 
Sbjct: 812  LFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLV 871

Query: 250  KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
            K   + +  +LF ++           YG L++GL+  G++ +A +L +++VD G R +  
Sbjct: 872  KSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNA 931

Query: 310  IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            IYN +I G  +    + A +LF+  V++ + PD  +   L+ C  E GR+D+        
Sbjct: 932  IYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDD-------- 983

Query: 370  EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEV 428
                                       AL  FE+LK  G Y     YN+++  L     +
Sbjct: 984  ---------------------------ALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRI 1016

Query: 429  KKALYLFGKM--RGLNLEV---NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
            ++AL L+ +M  RG+N ++   NSL  ++ +   VE     +A + + ++  +   P+V 
Sbjct: 1017 EEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVE-----QAGKLYEELQFIGLEPNVF 1071

Query: 484  AYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVAS 514
             YN L +G    G  D+A      M+V  C  N  +
Sbjct: 1072 TYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGT 1107



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 145/346 (41%), Gaps = 3/346 (0%)

Query: 209  MIRVLAAERNLDACLRVWEEMKKDL-VEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
            +I+VL   +       V+    K+L V+  + +Y  LI G            LF EMK  
Sbjct: 760  IIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNA 819

Query: 268  GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
            G   D   Y +L++     GK+ +  +L + ++ S  + +   +N II  L +    DKA
Sbjct: 820  GCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKA 879

Query: 328  YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
              LF   V  D +P   T  PLL    + GR++   +L  +M          +       
Sbjct: 880  LDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILING 939

Query: 388  VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
             GK   +  A ++F+ +  +G    +  Y  L+G L E G V  AL+ F K++   L ++
Sbjct: 940  FGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLD 999

Query: 447  SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
            S+++++ I     S  I EA   ++++      P +  YN L   L   G ++ A  L  
Sbjct: 1000 SIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYE 1059

Query: 507  DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
            + L  +   P  F Y   I     SG ++    V   M   GC PN
Sbjct: 1060 E-LQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPN 1104


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/474 (25%), Positives = 224/474 (47%), Gaps = 26/474 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG------------------RIA 185
           ++ G+  N  SYN L + L ++     A +V   M S+G                  R +
Sbjct: 184 RKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDS 243

Query: 186 EMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           EM+ +L K   +L  +P+V+ +T  IRVL     +D    ++  M  +    D++ Y  L
Sbjct: 244 EMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVL 303

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC  G++    ELF +MK NG   D+ IY  L++     G +    +    +   GY
Sbjct: 304 IDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGY 363

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  +  ++  LC+ + FD+A+  F+V  +  + P+  T N L+      GR+++  K
Sbjct: 364 MPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALK 423

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
           LL  ME +     A     F    GK      A++ FE++K KG   ++   N  + +L 
Sbjct: 424 LLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLA 483

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           E+G +++A  +F  +R   L  +S+++++ ++C+ + G + EA    +++I     P V 
Sbjct: 484 EMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVI 543

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
             N L   L K G +D A  +  D + ++   PT   Y   +  + + G  +K IE+   
Sbjct: 544 VVNSLIDSLYKAGRVDEAWQMF-DRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFES 602

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR----ERKLLTEANTIVY 593
           M ++ C PN +  + ++   CK+  +E A K+F+ +     +  +LT  NT++Y
Sbjct: 603 MIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLT-YNTVIY 655



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 206/474 (43%), Gaps = 56/474 (11%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G   +  +YN +  C S+                 G++ E + +L +M RN C+PDV
Sbjct: 499 RENGLAPDSVTYNMMMKCYSK----------------VGQVDEAVNLLSEMIRNGCEPDV 542

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
               ++I  L     +D   ++++ MK   +   V+ Y TL+ GL K GRV +  ELF  
Sbjct: 543 IVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFES 602

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M E     +   +  L++      +V  A  +   +     + D+  YN++I GL +  +
Sbjct: 603 MIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENK 662

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVN---PLLVCCAEMGRMDNFFKLLAQMEKLKFS----- 375
            + A+  F   ++  + PD  T+    P LV C ++G   +  +      + + +     
Sbjct: 663 VNHAFWFFH-QLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWE 721

Query: 376 -------VAADLEKFFEF---------------------LVGKEERIMMALDVFEELKGK 407
                  V A+++K   F                     ++ K +R + A  +F++   K
Sbjct: 722 DLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKK 781

Query: 408 -GYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G S ++  YN L+G LLE+   +KA  LF  M+ +    ++ +F++ +  H +SG I E
Sbjct: 782 LGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITE 841

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
             E + ++I     P    YN +   L K   +D A+    D + +    PT   Y   I
Sbjct: 842 LFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFR-PTPRTYGPLI 900

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             + + G  E+ + +  EM+  GC PN  I + +I+G  K G  E A ++F  +
Sbjct: 901 DGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRM 954



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 195/444 (43%), Gaps = 31/444 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K KG   N  + NA  Y L+                  GR+ E   +   +R N   PD 
Sbjct: 464 KAKGIVPNIVACNASLYSLAE----------------MGRLREAKTMFNGLRENGLAPDS 507

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  M++  +    +D  + +  EM ++  E DV+   +LI  L K GRV    ++F  
Sbjct: 508 VTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDR 567

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           MK+  +      Y  L+ GL  EG+V KA +L + +++     +   +N+++   C+  +
Sbjct: 568 MKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDE 627

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            + A K+F      D  PD  T N ++    +  ++++ F    Q++K   S+  D    
Sbjct: 628 VELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKK---SMHPDHVTI 684

Query: 384 FEFLVGK------EERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGK 437
              L G        + I +A D   +++ +   S   +  LMG  L   E+ KA+ +F +
Sbjct: 685 CTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRS--FWEDLMGGTLVEAEMDKAI-IFAE 741

Query: 438 MRGLNLEVNSLSFSIA-IQCHVESGDILEACECHNKII-EMSQVPSVAAYNCLTKGLCKI 495
              LN      SF I  ++   +    L A +  +K   ++   P++A+YNCL   L ++
Sbjct: 742 ELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEV 801

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
              + A  L +D + NV   P  F + + +    +SG+  ++ E+  EM    C P+ + 
Sbjct: 802 HYTEKAWDLFKD-MKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAIT 860

Query: 556 CSAIISGMCKHGTLEEARKVFTNL 579
            + +IS + K   L++A   F +L
Sbjct: 861 YNIVISSLAKSNNLDKALDFFYDL 884



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 113/485 (23%), Positives = 202/485 (41%), Gaps = 58/485 (11%)

Query: 151  NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
            N  S+N L  C  +N+    A                L++  KM    CKPDV  Y  +I
Sbjct: 611  NTISFNTLLDCFCKNDEVELA----------------LKMFSKMTVMDCKPDVLTYNTVI 654

Query: 211  RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE-MKENGI 269
              L  E  ++     + ++KK +   D +   TL+ GL K G++     + R+ M +   
Sbjct: 655  YGLIKENKVNHAFWFFHQLKKSM-HPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRF 713

Query: 270  LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG-------------------------- 303
             ++R+ +  L+ G + E ++ KA    ++LV +G                          
Sbjct: 714  RVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQ 773

Query: 304  ----YRADLGI------YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
                +   LGI      YN +IG L  V   +KA+ LF+       APD  T N LL   
Sbjct: 774  IFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVH 833

Query: 354  AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
             + G++   F+L  +M   +    A         + K   +  ALD F +L    +   P
Sbjct: 834  GKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTP 893

Query: 414  -IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
              Y  L+  L ++G +++A+ LF +M     + N   F+I I  + + GD   AC+   +
Sbjct: 894  RTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKR 953

Query: 473  IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
            ++     P + +Y  L   LC  G +D A+    + L +    P    Y   I  + +S 
Sbjct: 954  MVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNE-LKSTGLDPDFIAYNRIINGLGKSQ 1012

Query: 533  EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
              E+ + + NEM   G  P+    ++++  +   G +E+A++++  L+   L  E +   
Sbjct: 1013 RMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGL--EPDVFT 1070

Query: 593  YDEIL 597
            Y+ ++
Sbjct: 1071 YNALI 1075



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 98/460 (21%), Positives = 192/460 (41%), Gaps = 74/460 (16%)

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           M+  L     ++    V+E M+K ++  D+  Y+T+   L   G + +   +  +M++ G
Sbjct: 128 MLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAG 187

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACD---------------------------------- 294
            +++   Y  LI  L+  G  G+A +                                  
Sbjct: 188 FVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVM 247

Query: 295 -LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            LLK++ D G R ++  +   I  L R  + D+AY++F     +   PD  T   L+   
Sbjct: 248 VLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDAL 307

Query: 354 AEMGRMDNFFKLLAQMEKL--------------KFSVAADLEKFFEFLVGKEERIMM--- 396
              G+++N  +L  +M+                KF+   DL+ F EF    E    M   
Sbjct: 308 CNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDV 367

Query: 397 ------------------ALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGK 437
                             A   F+ ++ +G   ++  YN L+  LL  G ++ AL L G 
Sbjct: 368 VTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGT 427

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M  + ++  + +++I I    +SG+  +A E   K+     VP++ A N     L ++G 
Sbjct: 428 MESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGR 487

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           +  A  +      N    P    Y + +    + G+ ++ + +L+EM + GC P+ ++ +
Sbjct: 488 LREAKTMFNGLREN-GLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVN 546

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           ++I  + K G ++EA ++F  +++ KL      + Y+ +L
Sbjct: 547 SLIDSLYKAGRVDEAWQMFDRMKDMKL--SPTVVTYNTLL 584



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 128/311 (41%), Gaps = 32/311 (10%)

Query: 135  ASKFFHWAGKQKGYKHNFASYNALA-------YCLSRNNLFRAADQVPELMDS------- 180
            A + F    K+ G     ASYN L        Y     +LF+    V    D+       
Sbjct: 771  AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830

Query: 181  -----QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
                  G+I E+ E+ ++M    CKPD   Y  +I  LA   NLD  L  +     DLV 
Sbjct: 831  AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFF----YDLVS 886

Query: 236  ADV----MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
            +D       Y  LI GL K GR+     LF EM + G   + AI+ +LI G    G    
Sbjct: 887  SDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTET 946

Query: 292  ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
            AC L K +V+ G R DL  Y  ++  LC   + D+A   F       L PDF   N ++ 
Sbjct: 947  ACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIIN 1006

Query: 352  CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGY 409
               +  RM+    L  +M      +  DL  +   +  +G    +  A  ++EEL+  G 
Sbjct: 1007 GLGKSQRMEEALALYNEMRNR--GIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGL 1064

Query: 410  S-SVPIYNILM 419
               V  YN L+
Sbjct: 1065 EPDVFTYNALI 1075



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 152/363 (41%), Gaps = 4/363 (1%)

Query: 192  EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMAYVTLIMGLCK 250
            E +   +C+ D F    ++RVL   +      +++++  K L +   + +Y  LI  L +
Sbjct: 742  ELVLNGICREDSFL-IPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLE 800

Query: 251  GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
                 +  +LF++MK  G   D   + +L+      GK+ +  +L K+++    + D   
Sbjct: 801  VHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAIT 860

Query: 311  YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
            YN +I  L +    DKA   F   V  D  P   T  PL+   A++GR++   +L  +M 
Sbjct: 861  YNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMS 920

Query: 371  KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVK 429
                     +        GK      A  +F+ +  +G    +  Y IL+  L   G V 
Sbjct: 921  DYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVD 980

Query: 430  KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
            +ALY F +++   L+ + ++++  I    +S  + EA   +N++     VP +  YN L 
Sbjct: 981  EALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLM 1040

Query: 490  KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
              L   G ++ A  +  + L      P  F Y   I     S   E    V   M  +GC
Sbjct: 1041 LNLGLAGMVEQAKRMYEE-LQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGC 1099

Query: 550  PPN 552
             PN
Sbjct: 1100 NPN 1102



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 3/176 (1%)

Query: 177  LMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
            L++  G+I +     ++ ++M     +PD+ +YT ++  L     +D  L  + E+K   
Sbjct: 934  LINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTG 993

Query: 234  VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
            ++ D +AY  +I GL K  R+     L+ EM+  GI+ D   Y  L+  L   G V +A 
Sbjct: 994  LDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAK 1053

Query: 294  DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
             + ++L  +G   D+  YN++I G    +  + AY +++  + D   P+  T   L
Sbjct: 1054 RMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109


>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 642

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 145/557 (26%), Positives = 250/557 (44%), Gaps = 64/557 (11%)

Query: 101 FQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALA 159
           F+WGP     L  L+ +V   LV EVLK++    +  +FF WAGK++ ++H+ +S+ AL 
Sbjct: 75  FKWGPDAEKALEVLKLKVDHRLVHEVLKIDVEINVKIQFFKWAGKRRNFEHDSSSFMALI 134

Query: 160 YCLSR-----------NNLFRAA---------DQVPELMDSQGRIAEMLEILEKMRRNLC 199
           + L              ++ R++          ++ +L+     + + L +  +++   C
Sbjct: 135 HSLDEAGFYGEMWKTIQDMVRSSTCVISSVYLSEIVKLLGKAKMVNKALSVFYQIKGRKC 194

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD-LVEADVMAYVTLIMGLCKGGRVVRGH 258
           KP    Y +MI +L  E +L+    ++ EM  D     D + Y  LI    K G      
Sbjct: 195 KPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFGKLGHYDSAI 254

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            LF EMKENG+     IY  L+       KV KA D++K++ D G    +  Y   I GL
Sbjct: 255 RLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYTEWIKGL 314

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF---- 374
            +  + D AY++F   ++D   PD   +N L+    ++GR++   KL  +ME  +     
Sbjct: 315 GKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPNV 374

Query: 375 --------------SVAADLEKFFEFLVG------------------KEERIMMALDVFE 402
                         + A++   +FE + G                  K  RI  AL + E
Sbjct: 375 VTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLE 434

Query: 403 ELKGKGYSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           E+  KG+   P  Y  L+ +L ++   + A  LF +++      ++  +++ I+   + G
Sbjct: 435 EMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHSSARVYAVMIKHFGKCG 494

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
            + EA +  N++ ++   P V AYN L  G+ + G ID A  L+R    N  S P    +
Sbjct: 495 RLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCS-PDLNSH 553

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            + +  + R+G  ++ IE+  +M      P+ V  + ++  +   G  EEA K+   +RE
Sbjct: 554 NIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKL---MRE 610

Query: 582 RKLLT-EANTIVYDEIL 597
             L   E N I Y  IL
Sbjct: 611 MNLKGFEYNNITYTSIL 627



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 74/146 (50%), Gaps = 1/146 (0%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR++E +++  +M +   KPDV+AY A++  +     +D    +   M ++    D+ ++
Sbjct: 494 GRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSH 553

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++ GL + G   R  E+F +MK + I  D   Y  ++  L   G   +A  L++++  
Sbjct: 554 NIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKLMREMNL 613

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKA 327
            G+  +   Y SI+  + +V + D+A
Sbjct: 614 KGFEYNNITYTSILEAVGKVDE-DRA 638


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 123/474 (25%), Positives = 223/474 (47%), Gaps = 26/474 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG------------------RIA 185
           ++ G+  N  SYN L + L ++     A +V   M S+G                  R +
Sbjct: 184 RKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDS 243

Query: 186 EMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           EM+ +L K   +L  +P+V+ +T  IRVL     +D    ++  M  +    D++ Y  L
Sbjct: 244 EMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVL 303

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC  G++    ELF +MK NG   D+ IY  L++     G +    +    +   GY
Sbjct: 304 IDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGY 363

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  +  ++  LC+ + FD+A+  F+V  +  + P+  T N L+      GR+++  K
Sbjct: 364 MPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALK 423

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
           LL  ME +     A     F    GK      A++ FE++K KG   ++   N  + +L 
Sbjct: 424 LLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLA 483

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           E+G +++A  +F  +R   L  +S+++++ ++C+ + G + EA    +++I     P V 
Sbjct: 484 EMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVI 543

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
             N L   L K G +D A  +  D + ++   PT   Y   +  + + G  +K IE+   
Sbjct: 544 VVNSLIDSLYKAGRVDEAWQMF-DRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFES 602

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR----ERKLLTEANTIVY 593
           M  + C PN +  + ++   CK+  +E A K+F+ +     +  +LT  NT++Y
Sbjct: 603 MIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLT-YNTVIY 655



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 112/474 (23%), Positives = 205/474 (43%), Gaps = 56/474 (11%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G   +  +YN +  C S+                 G++ E + +L +M RN C+PDV
Sbjct: 499 RENGLAPDSVTYNMMMKCYSK----------------VGQVDEAVNLLSEMIRNGCEPDV 542

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
               ++I  L     +D   ++++ MK   +   V+ Y TL+ GL K GRV +  ELF  
Sbjct: 543 IVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFES 602

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M       +   +  L++      +V  A  +   +     + D+  YN++I GL +  +
Sbjct: 603 MIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENK 662

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVN---PLLVCCAEMGRMDNFFKLLAQMEKLKFS----- 375
            + A+  F   ++  + PD  T+    P LV C ++G   +  +      + + +     
Sbjct: 663 VNHAFWFFH-QLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWE 721

Query: 376 -------VAADLEKFFEF---------------------LVGKEERIMMALDVFEELKGK 407
                  V A+++K   F                     ++ K +R + A  +F++   K
Sbjct: 722 DLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKK 781

Query: 408 -GYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G S ++  YN L+G LLE+   +KA  LF  M+ +    ++ +F++ +  H +SG I E
Sbjct: 782 LGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITE 841

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
             E + ++I     P    YN +   L K   +D A+    D + +    PT   Y   I
Sbjct: 842 LFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFR-PTPRTYGPLI 900

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             + + G  E+ + +  EM+  GC PN  I + +I+G  K G  E A ++F  +
Sbjct: 901 DGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRM 954



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 113/485 (23%), Positives = 202/485 (41%), Gaps = 58/485 (11%)

Query: 151  NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
            N  S+N L  C  +N+    A                L++  KM    CKPDV  Y  +I
Sbjct: 611  NTISFNTLLDCFCKNDEVELA----------------LKMFSKMTVMDCKPDVLTYNTVI 654

Query: 211  RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE-MKENGI 269
              L  E  ++     + ++KK +   D +   TL+ GL K G++     + R+ M +   
Sbjct: 655  YGLIKENKVNHAFWFFHQLKKSM-HPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRF 713

Query: 270  LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG-------------------------- 303
             ++R+ +  L+ G + E ++ KA    ++LV +G                          
Sbjct: 714  RVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQ 773

Query: 304  ----YRADLGI------YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
                +   LGI      YN +IG L  V   +KA+ LF+       APD  T N LL   
Sbjct: 774  IFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVH 833

Query: 354  AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
             + G++   F+L  +M   +    A         + K   +  ALD F +L    +   P
Sbjct: 834  GKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTP 893

Query: 414  -IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
              Y  L+  L ++G +++A+ LF +M     + N   F+I I  + + GD   AC+   +
Sbjct: 894  RTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKR 953

Query: 473  IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
            ++     P + +Y  L   LC  G +D A+    + L +    P    Y   I  + +S 
Sbjct: 954  MVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNE-LKSTGLDPDFIAYNRIINGLGKSQ 1012

Query: 533  EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
              E+ + + NEM   G  P+    ++++  +   G +E+A++++  L+   L  E +   
Sbjct: 1013 RMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGL--EPDVFT 1070

Query: 593  YDEIL 597
            Y+ ++
Sbjct: 1071 YNALI 1075



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 194/444 (43%), Gaps = 31/444 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K KG   N  + NA  Y L+                  GR+ E   +   +R N   PD 
Sbjct: 464 KAKGIVPNIVACNASLYSLAE----------------MGRLREAKTMFNGLRENGLAPDS 507

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  M++  +    +D  + +  EM ++  E DV+   +LI  L K GRV    ++F  
Sbjct: 508 VTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDR 567

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           MK+  +      Y  L+ GL  EG+V KA +L + ++      +   +N+++   C+  +
Sbjct: 568 MKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDE 627

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            + A K+F      D  PD  T N ++    +  ++++ F    Q++K   S+  D    
Sbjct: 628 VELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKK---SMHPDHVTI 684

Query: 384 FEFLVGK------EERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGK 437
              L G        + I +A D   +++ +   S   +  LMG  L   E+ KA+ +F +
Sbjct: 685 CTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRS--FWEDLMGGTLVEAEMDKAI-IFAE 741

Query: 438 MRGLNLEVNSLSFSIA-IQCHVESGDILEACECHNKII-EMSQVPSVAAYNCLTKGLCKI 495
              LN      SF I  ++   +    L A +  +K   ++   P++A+YNCL   L ++
Sbjct: 742 ELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEV 801

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
              + A  L +D + NV   P  F + + +    +SG+  ++ E+  EM    C P+ + 
Sbjct: 802 HYTEKAWDLFKD-MKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAIT 860

Query: 556 CSAIISGMCKHGTLEEARKVFTNL 579
            + +IS + K   L++A   F +L
Sbjct: 861 YNIVISSLAKSNNLDKALDFFYDL 884



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 178/385 (46%), Gaps = 6/385 (1%)

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           M+  L     ++    V+E M+K ++  D+  Y+T+   L   G + +   +  +M++ G
Sbjct: 128 MLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAG 187

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
            +++   Y  LI  L+  G  G+A ++ + +V  G +  L  Y++++  L + +  +   
Sbjct: 188 FVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVM 247

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL- 387
            L +      L P+  T    +      G++D  +++  +M+        DL  +   + 
Sbjct: 248 VLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDE--GCGPDLVTYTVLID 305

Query: 388 -VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
            +    ++  A ++F ++K  G+     IY  L+    + G++      + +M       
Sbjct: 306 ALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMP 365

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           + ++F+I +    ++ D  EA    + + +   +P++  YN L  GL + G I+ A+ L+
Sbjct: 366 DVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLL 425

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
            D + +V   PT + Y   I +  +SGE  K +E   +M  +G  PN V C+A +  + +
Sbjct: 426 -DTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAE 484

Query: 566 HGTLEEARKVFTNLRERKLLTEANT 590
            G L EA+ +F  LRE  L  ++ T
Sbjct: 485 MGRLREAKTMFNGLRENGLAPDSVT 509



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 128/311 (41%), Gaps = 32/311 (10%)

Query: 135  ASKFFHWAGKQKGYKHNFASYNALA-------YCLSRNNLFRAADQVPELMDS------- 180
            A + F    K+ G     ASYN L        Y     +LF+    V    D+       
Sbjct: 771  AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830

Query: 181  -----QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
                  G+I E+ E+ ++M    CKPD   Y  +I  LA   NLD  L  +     DLV 
Sbjct: 831  AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFF----YDLVS 886

Query: 236  ADV----MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
            +D       Y  LI GL K GR+     LF EM + G   + AI+ +LI G    G    
Sbjct: 887  SDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTET 946

Query: 292  ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
            AC L K +V+ G R DL  Y  ++  LC   + D+A   F       L PDF   N ++ 
Sbjct: 947  ACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIIN 1006

Query: 352  CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGY 409
               +  RM+    L  +M      +  DL  +   +  +G    +  A  ++EEL+  G 
Sbjct: 1007 GLGKSQRMEEALALYNEMRNR--GIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGL 1064

Query: 410  S-SVPIYNILM 419
               V  YN L+
Sbjct: 1065 EPDVFTYNALI 1075



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 152/363 (41%), Gaps = 4/363 (1%)

Query: 192  EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMAYVTLIMGLCK 250
            E +   +C+ D F    ++RVL   +      +++++  K L +   + +Y  LI  L +
Sbjct: 742  ELVLNGICREDSFL-IPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLE 800

Query: 251  GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
                 +  +LF++MK  G   D   + +L+      GK+ +  +L K+++    + D   
Sbjct: 801  VHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAIT 860

Query: 311  YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
            YN +I  L +    DKA   F   V  D  P   T  PL+   A++GR++   +L  +M 
Sbjct: 861  YNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMS 920

Query: 371  KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVK 429
                     +        GK      A  +F+ +  +G    +  Y IL+  L   G V 
Sbjct: 921  DYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVD 980

Query: 430  KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
            +ALY F +++   L+ + ++++  I    +S  + EA   +N++     VP +  YN L 
Sbjct: 981  EALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLM 1040

Query: 490  KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
              L   G ++ A  +  + L      P  F Y   I     S   E    V   M  +GC
Sbjct: 1041 LNLGLAGMVEQAKRMYEE-LQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGC 1099

Query: 550  PPN 552
             PN
Sbjct: 1100 NPN 1102



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 3/176 (1%)

Query: 177  LMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
            L++  G+I +     ++ ++M     +PD+ +YT ++  L     +D  L  + E+K   
Sbjct: 934  LINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTG 993

Query: 234  VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
            ++ D +AY  +I GL K  R+     L+ EM+  GI+ D   Y  L+  L   G V +A 
Sbjct: 994  LDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAK 1053

Query: 294  DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
             + ++L  +G   D+  YN++I G    +  + AY +++  + D   P+  T   L
Sbjct: 1054 RMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 213/457 (46%), Gaps = 23/457 (5%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            +G K +  +Y+AL   L R                +G   +++ +LE+M+    +P+++
Sbjct: 228 SEGMKPSMKTYSALMVALGR----------------RGDTRKIMNLLEEMKSIGLRPNIY 271

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            YT  IR L   R +D    +++EM  +    DV+ Y  LI  LC  G++ +  EL+ +M
Sbjct: 272 TYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKM 331

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           + +    DR  Y  L++     G +        ++   GY  D+  Y  +I  LC+    
Sbjct: 332 RASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDV 391

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           D+A+ + +V     + P+  T N ++    +  R+D   +LL  ME L     A     F
Sbjct: 392 DRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLF 451

Query: 385 EFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
               GK      A+D FE +K +G   S+   N  +  L E G + +A  +F  +    L
Sbjct: 452 IDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGL 511

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM- 502
             +S+++++ ++C+ ++G I +A +  +++I     P V   N L   L K G +DAA  
Sbjct: 512 SPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWK 571

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
           M  R  L N+   PT   Y + +  + + G+  K +E+   MT+ GCPPN +  ++++  
Sbjct: 572 MFGR--LKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDC 629

Query: 563 MCKHGTLEEARKVF---TNLRERKLLTEANTIVYDEI 596
           + K+  ++ A K+F   T +     +   NTI+Y  I
Sbjct: 630 LSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLI 666



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 110/448 (24%), Positives = 192/448 (42%), Gaps = 39/448 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K++G   + A+ NA  Y L+                  GRI+E  +I   + +    PD 
Sbjct: 472 KKRGIMPSIAACNASLYTLAET----------------GRISEAEDIFNDLHKCGLSPDS 515

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  +++  +    +D   ++  EM     E DVM   +LI  L K GRV    ++F  
Sbjct: 516 VTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGR 575

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +K   +      Y +L+ GL  EGK+ KA +L   + +SG   +   +NS++  L +   
Sbjct: 576 LKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDA 635

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            D A K+F      +  PD  T N ++      GR+D  F    QM+K    ++ D    
Sbjct: 636 VDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKF---LSPDYVTL 692

Query: 384 FEFLVG--KEERIMMALDVFEELKGKG--YSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
              + G  +  R+  A+ V  E   +    ++   +  LM  +L   E+++A+  F ++ 
Sbjct: 693 CTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAIS-FAEI- 750

Query: 440 GLNLEVNSLSFS-------IAIQCHVESGDILEACECHNKIIEMSQV-PSVAAYNCLTKG 491
              L  NS+          I + C  +    L+A    +K  +   + P++ +YNCL  G
Sbjct: 751 ---LVCNSVCQDDHVMLPLIKVLCKRKKA--LDAQNVFDKFTKNLGIHPTLESYNCLMDG 805

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
           L      + A+ L  D + +  + P  F Y L +    +S    K+ ++ +EM   GC P
Sbjct: 806 LLGSNFTEKALELFED-MKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEP 864

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNL 579
           N +  + IIS + K   L +A  ++  L
Sbjct: 865 NAITHNIIISALVKSNNLNKALDLYYEL 892



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 122/521 (23%), Positives = 210/521 (40%), Gaps = 64/521 (12%)

Query: 145  QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            + G   N  ++N+L  CLS+N+    A                L++  +M    C PDV 
Sbjct: 613  ESGCPPNTITFNSLLDCLSKNDAVDLA----------------LKMFCRMTMMNCNPDVL 656

Query: 205  AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
             Y  +I  L  E  +D     + +MKK  +  D +   TLI G+ + GRV    ++  E 
Sbjct: 657  TYNTIIYGLIREGRIDYAFWFFHQMKK-FLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEF 715

Query: 265  KENGIL-IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG-------------------- 303
                 L  +   +G L+E ++ E ++ +A    + LV +                     
Sbjct: 716  VHQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKK 775

Query: 304  ----------YRADLGI------YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
                      +  +LGI      YN ++ GL      +KA +LFE        P+  T N
Sbjct: 776  ALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYN 835

Query: 348  PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK 407
             LL    +  R++  + L ++M        A         + K   +  ALD++ EL   
Sbjct: 836  LLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSG 895

Query: 408  GYSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
             +S  P  Y  L+  LL+ G  ++A+ +F +M       NS+ ++I I    +SG+I  A
Sbjct: 896  DFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFA 955

Query: 467  CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
            CE   K+++    P + +Y  L + LC  G ID A+    + L      P    Y   I 
Sbjct: 956  CELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEE-LKLTGLDPDTVSYNFIIN 1014

Query: 527  HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
             + +S   ++ + + +EM   G  P+    +A+I  +   G ++ A K++  L+   L  
Sbjct: 1015 GLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGL-- 1072

Query: 587  EANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
            E +   Y+ ++  H      D   S  K      K+   GC
Sbjct: 1073 EPSVFTYNALIRGHSLSGNKDQAFSVFK------KMMVVGC 1107



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 112/489 (22%), Positives = 207/489 (42%), Gaps = 79/489 (16%)

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           M+ +L  +R ++  + V++ M+K ++  ++  Y+T+   L   G + R     R+M E G
Sbjct: 137 MLEILREQRRIEDMVFVFDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVG 196

Query: 269 ILIDRAIYGVLI--------------------EG-----------LVGEGKVG---KACD 294
            +++   Y  LI                    EG           +V  G+ G   K  +
Sbjct: 197 FILNAYSYNGLIHLLLPGFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMN 256

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           LL+++   G R ++  Y   I  L R ++ D A+ +F+    +   PD  T   L+    
Sbjct: 257 LLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALC 316

Query: 355 EMGRMDNFFKLLAQMEKL--------------KFSVAADLEKFFEFL------------- 387
             G++D   +L  +M                 KF    DLE    F              
Sbjct: 317 AAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVV 376

Query: 388 --------VGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM 438
                   + K   +  A D+ + +  KG + ++  YN ++  LL+   + +AL L   M
Sbjct: 377 TYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENM 436

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
             L ++  + S+ + I  + +SGD  +A +    + +   +PS+AA N     L + G I
Sbjct: 437 ESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRI 496

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
             A  +  D L      P    Y + +    ++G+ +K  ++L+EM  +GC P+ +I ++
Sbjct: 497 SEAEDIFND-LHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINS 555

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGL 618
           +I+ + K G ++ A K+F  L+  KL   A T+V   IL+  + K+    +L  L+ FG 
Sbjct: 556 LINTLYKAGRVDAAWKMFGRLKNLKL---APTVVTYNILLTGLGKEGK--ILKALELFG- 609

Query: 619 ESKLKAKGC 627
              +   GC
Sbjct: 610 --SMTESGC 616



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 147/339 (43%), Gaps = 24/339 (7%)

Query: 135  ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG------------ 182
            A   F    K  G      SYN L   L  +N    A ++ E M S G            
Sbjct: 779  AQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLL 838

Query: 183  -------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
                   RI ++ ++  +MR   C+P+   +  +I  L    NL+  L ++ E+      
Sbjct: 839  DAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFS 898

Query: 236  ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
                 Y  LI GL K GR  +  ++F EM + G   +  IY +LI G    G++  AC+L
Sbjct: 899  PTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACEL 958

Query: 296  LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
             K +V  G R DL  Y  ++  LC   + D+A + FE      L PD  + N ++    +
Sbjct: 959  FKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGK 1018

Query: 356  MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SV 412
              R+D    L ++M+     ++ DL  +   +  +G   ++ +A+ ++EEL+  G   SV
Sbjct: 1019 SRRLDEALSLFSEMKNR--GISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSV 1076

Query: 413  PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
              YN L+      G   +A  +F KM  +    N+ +F+
Sbjct: 1077 FTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFA 1115



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 146/302 (48%), Gaps = 7/302 (2%)

Query: 188  LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            LE+ E M+     P+ F Y  ++      + ++    ++ EM+    E + + +  +I  
Sbjct: 816  LELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISA 875

Query: 248  LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            L K   + +  +L+ E+           YG LI+GL+  G+  +A  + ++++D G   +
Sbjct: 876  LVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPN 935

Query: 308  LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
              IYN +I G  +  + D A +LF+  V++ + PD  +   L+ C    GR+D   + + 
Sbjct: 936  SVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRID---EAVQ 992

Query: 368  QMEKLKFSVAADLEKFFEFLV---GKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
              E+LK +        + F++   GK  R+  AL +F E+K +G S  +  YN L+  L 
Sbjct: 993  YFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLG 1052

Query: 424  EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
              G+V  A+ ++ +++ + LE +  +++  I+ H  SG+  +A     K++ +   P+  
Sbjct: 1053 IAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTE 1112

Query: 484  AY 485
             +
Sbjct: 1113 TF 1114



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 171/397 (43%), Gaps = 11/397 (2%)

Query: 161  CLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLD 220
            CL  N+ F    ++ E + ++  I E +   E +  N    D      +I+VL   +   
Sbjct: 720  CLQTNSQFWG--ELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKAL 777

Query: 221  ACLRVWEEMKKDL-VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL 279
                V+++  K+L +   + +Y  L+ GL       +  ELF +MK  G   +   Y +L
Sbjct: 778  DAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLL 837

Query: 280  IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339
            ++      ++ K  DL  ++   G   +   +N II  L +    +KA  L+   +  D 
Sbjct: 838  LDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDF 897

Query: 340  APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV---GKEERIMM 396
            +P   T  PL+    + GR +   K+  +M  L +    +    +  L+   GK   I  
Sbjct: 898  SPTPCTYGPLIDGLLKAGRSEQAMKIFEEM--LDYGCGPN-SVIYNILINGFGKSGEIDF 954

Query: 397  ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
            A ++F+++  +G    +  Y IL+  L   G + +A+  F +++   L+ +++S++  I 
Sbjct: 955  ACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIIN 1014

Query: 456  CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
               +S  + EA    +++      P +  YN L   L   G++D A+ +  + L  V   
Sbjct: 1015 GLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEE-LQLVGLE 1073

Query: 516  PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
            P+ F Y   I     SG  ++   V  +M   GC PN
Sbjct: 1074 PSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPN 1110


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 192/380 (50%), Gaps = 12/380 (3%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PDVF YT++I       +LD   ++ EEM       D  AY  LI  LCK GRV   +E
Sbjct: 121 RPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYE 180

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           LF  M+++G L D   +  LIE L   GK+ +AC+L +++++ GY   L + +S+I  LC
Sbjct: 181 LFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALC 240

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +  + D+A ++++  V   +A      N L+    ++GR+D+  KLL QM  ++     D
Sbjct: 241 KAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQM--VECDNFPD 298

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
           ++ +   + G  +  R+  AL++F+ L   G   +   Y  ++  L +   +++A   F 
Sbjct: 299 IQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFD 358

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +       ++ +S++  I+   +S  I EACE   K+      P+V AY  +  GL K G
Sbjct: 359 E------ALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAG 412

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            I+  +    D  G+ +  PT   Y + I  +C++       +V  +M Q+GC P+ +  
Sbjct: 413 RIEDGLKNFEDMSGS-SCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITY 471

Query: 557 SAIISGMCKHGTLEEARKVF 576
           + +I G  K   ++EARK+ 
Sbjct: 472 TTLIDGFSKASKMDEARKLL 491



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 182/404 (45%), Gaps = 12/404 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E  E+ E+MR++ C  D   +  +I  L+    LD    ++ EM +   E  +   
Sbjct: 173 GRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQ 232

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI  LCK G+V   +E+++ +    +   R  Y  L++G    G+V     LL  +V+
Sbjct: 233 DSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVE 292

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                D+  YN ++ G  R  + D A +LF++       P+ +T   ++    +  RM+ 
Sbjct: 293 CDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEE 352

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
                    K  F  A D+  +   + G    +RI  A ++FE+LK  G S +V  Y  +
Sbjct: 353 --------AKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAV 404

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  LL+ G ++  L  F  M G +      ++++ I    ++  + +AC+   ++++   
Sbjct: 405 IDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGC 464

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           VP    Y  L  G  K  ++D A  L+ D +      PT   Y   +   C+     +  
Sbjct: 465 VPDTITYTTLIDGFSKASKMDEARKLL-DVMLTKGPEPTAVTYGSIVHGFCKLDMINEAK 523

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           EV+ +M + GC P   I ++++S     G  EEA +V T +  R
Sbjct: 524 EVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTAR 567



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/460 (23%), Positives = 193/460 (41%), Gaps = 38/460 (8%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           +  +YN L    SR N                R+ + LE+ + +    CKP+   YT +I
Sbjct: 298 DIQTYNILVAGFSRAN----------------RLDDALELFKLLSSYGCKPNAATYTTII 341

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEA-DVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
           + L   + +       EE K    EA DV++Y T+I GL    R+    ELF ++K  G 
Sbjct: 342 QGLYDAQRM-------EEAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGC 394

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
             +   Y  +I+GL+  G++       +D+  S        Y  +I GLC+ +    A K
Sbjct: 395 SPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACK 454

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-----EKLKFSVAADLEKFF 384
           +FE  VQ    PD  T   L+   ++  +MD   KLL  M     E    +  + +  F 
Sbjct: 455 VFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFC 514

Query: 385 EFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
                K + I  A +V  +++ +G    + I+  L+   L  G  ++A  +  +M     
Sbjct: 515 -----KLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGC 569

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             + + ++  I     +G + EA    + +IE    P    Y  + +   KIG ++AA  
Sbjct: 570 APDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGE 629

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           ++ + +     GP  F Y   +    +    ++   V + M   G  PN V  + ++ G+
Sbjct: 630 IL-ELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGL 688

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
            K G  + A  +F  + E+  +    T+V   ILI+ + K
Sbjct: 689 FKDGKTDRAFSLFKEMLEKDEVPP--TLVSYTILIDGLGK 726



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 180/409 (44%), Gaps = 22/409 (5%)

Query: 185 AEML----EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           A+ML    ++ E+M +  C PD   YT +I   +    +D   ++ + M     E   + 
Sbjct: 446 AQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVT 505

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +++ G CK   +    E+  +M+E G      I+  L+   + +G+  +A  +L ++ 
Sbjct: 506 YGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMT 565

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D+ +Y S+I  L    +  +A  +F+  ++   APD  T   ++   +++G ++
Sbjct: 566 ARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVE 625

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNI 417
              ++L  M   K  V  D   +   + G  K ER+  A  V++ +   G     + +N+
Sbjct: 626 AAGEILELMA--KSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNV 683

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNS-----LSFSIAIQCHVESGDILEACECHNK 472
           LM  L + G+  +A  LF +M    LE +      +S++I I    ++G + EA     +
Sbjct: 684 LMHGLFKDGKTDRAFSLFKEM----LEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQE 739

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           +I+   +P    Y  L   L K G I  A  LV D +  +   P    Y+  I  +  S 
Sbjct: 740 MIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMV-KLGVNPDVQAYSALITGLIDSS 798

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG---TLEEARKVFTN 578
             +   +V  EM + GC PNEV    +  G    G    LE  ++ F+ 
Sbjct: 799 MVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALDLEAVKQHFSQ 847



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 146/314 (46%), Gaps = 8/314 (2%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           I E  E++ +MR   C+P +F +T+++    ++   +   +V  EM       DV+ Y +
Sbjct: 519 INEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTS 578

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           LI  L   GRV     +F  M E G   D   YG +I+     G V  A ++L+ +  SG
Sbjct: 579 LIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSG 638

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
              D   YNS++ G  ++++ D+A+ +++  V   + P+  T N L+    + G+ D  F
Sbjct: 639 VGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAF 698

Query: 364 KLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYSSVP---IYNIL 418
            L  +M + K  V   L  +   +  +GK  R+  A   F+E+  +G   +P    Y  L
Sbjct: 699 SLFKEMLE-KDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGI--IPECHTYTSL 755

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + +L + G + +A  L   M  L +  +  ++S  I   ++S  +  A +   ++++   
Sbjct: 756 IYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGC 815

Query: 479 VPSVAAYNCLTKGL 492
            P+   Y  L +G 
Sbjct: 816 APNEVTYKVLRRGF 829



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 163/366 (44%), Gaps = 17/366 (4%)

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
           ++  L   +EM    +  DV+    ++ GLCK  ++ +  ELF EM   G       Y  
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           +I GL    K+ +A      ++D+G   D+  + ++I G C+  Q    + L    ++  
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALK-R 119

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMM 396
             PD      ++    + G +D  FK+L +M  L      D   +F  +  + K  R+  
Sbjct: 120 FRPDVFLYTSVIHGYCKAGDLDTGFKILEEM--LAAGCIPDAAAYFVLIDPLCKLGRVDE 177

Query: 397 ALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM--RGLN--LEV-NSLSF 450
           A ++FE ++  G       +  L+ AL   G++ +A  L+ +M  RG    LEV +SL F
Sbjct: 178 AYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIF 237

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           ++      ++G + EA E +  ++      S  AYN L  G CK+G +D  + L+   + 
Sbjct: 238 ALC-----KAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMV- 291

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
              + P    Y + +    R+   +  +E+   ++  GC PN    + II G+     +E
Sbjct: 292 ECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRME 351

Query: 571 EARKVF 576
           EA+  F
Sbjct: 352 EAKAFF 357



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 5/236 (2%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           +L+ S GR+ E   + + M    C PD   Y  +I+  +   N++A   + E M K  V 
Sbjct: 581 DLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVG 640

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            D  AY +L+ G  K  RV +   ++  M  +GI  +   + VL+ GL  +GK  +A  L
Sbjct: 641 PDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSL 700

Query: 296 LKDLVDSG-YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
            K++++       L  Y  +I GL +  +  +A+  F+  +   + P+  T   L+   A
Sbjct: 701 FKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLA 760

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKG 408
           + GR+    KL+  M KL   V  D++ +   + G  +  M+  A DVF+E+  +G
Sbjct: 761 KAGRIPEAKKLVEDMVKL--GVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRG 814



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 124/275 (45%), Gaps = 2/275 (0%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+GR  E  ++L +M    C PDV  YT++I +L +   +     V++ M +     D +
Sbjct: 550 SKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDAL 609

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I    K G V    E+   M ++G+  D   Y  L++G V   +V +A  +   +
Sbjct: 610 TYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRM 669

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           V SG + +   +N ++ GL +  + D+A+ LF E+  +D++ P   +   L+    + GR
Sbjct: 670 VASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGR 729

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNI 417
           +   F    +M                + + K  RI  A  + E++   G +  V  Y+ 
Sbjct: 730 VSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSA 789

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           L+  L++   V  A  +F +M       N +++ +
Sbjct: 790 LITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKV 824



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 20/162 (12%)

Query: 147 GYKHNFASYNALAYCLSRN-------NLFRAA---DQVPELMDS----------QGRIAE 186
           G K N  ++N L + L ++       +LF+     D+VP  + S           GR++E
Sbjct: 673 GIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSE 732

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
                ++M      P+   YT++I  LA    +    ++ E+M K  V  DV AY  LI 
Sbjct: 733 AFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALIT 792

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           GL     V    ++F+EM + G   +   Y VL  G    G+
Sbjct: 793 GLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGR 834


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 204/418 (48%), Gaps = 12/418 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD------LVEA 236
           RI+E   +L KM R   +P+V  Y  ++  L    N    +++ EEM          ++ 
Sbjct: 177 RISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKP 236

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           +++ Y T+I  LCK G + +G ELF EMK  GI  D   Y  +I G+   G+   A  L 
Sbjct: 237 NLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLF 296

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            ++VD G   ++  +N +I  LC+  + ++A  L ++ +Q   +PD  T N L+      
Sbjct: 297 NEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLE 356

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVP 413
           GR+D+   L   ME     +  D   +   + G  K  R++ A  ++ E+  K    +V 
Sbjct: 357 GRIDDARDLFVSMESK--GIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVI 414

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN L+  L   G+V+ A  LFG+M+  +L   S +++I +    ++  + EA E  + +
Sbjct: 415 TYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYL 474

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
                 PS+  +NCL  GLCK  +I+ A  L    L +    P    Y + I  +C+SG+
Sbjct: 475 ENHDFQPSIQIFNCLIDGLCKARKIEIARELFNR-LSHEGLEPNVITYTVMIHGLCKSGQ 533

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
            E   ++   M ++GC PN V  + ++ G C++  +++  ++   + E+    +A+TI
Sbjct: 534 LENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTI 591



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 153/328 (46%), Gaps = 1/328 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G I +  E+  +M+     PDV AY+++I  +      +    ++ EM  + V  +V+ 
Sbjct: 251 DGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVT 310

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  LI  LCK G++   + L + M + G   D   Y  LI+G   EG++  A DL   + 
Sbjct: 311 FNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSME 370

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D   YN +I G C+  +  +A KL+   +  ++ P   T N LL      G++ 
Sbjct: 371 SKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVR 430

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
           + + L  +M+    +  +         + K   +  A+++F  L+   +  S+ I+N L+
Sbjct: 431 DAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLI 490

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L +  +++ A  LF ++    LE N +++++ I    +SG +  A +    + E    
Sbjct: 491 DGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCA 550

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
           P++  +N L +G C+  E+   + L+++
Sbjct: 551 PNLVTFNTLMRGFCQNDEMQKVVELLQE 578



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 100/466 (21%), Positives = 202/466 (43%), Gaps = 53/466 (11%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P + ++  ++  +A  +     + +++ M    +  D +    LI   C   +V  G  +
Sbjct: 90  PPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAV 149

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             EM   G   +   +  L++GL    ++ +A  LL+ +V  GYR ++  Y +++ GLC 
Sbjct: 150 LGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCM 209

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM-------GRMDNFFKLLAQMEKLK 373
                 A KL E  +  +      T+ P LVC   +       G +D   +L  +M+   
Sbjct: 210 TGNTMLAVKLHEEMLNGNGGFGV-TIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGR- 267

Query: 374 FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKK 430
             ++ D+  +   + G     R   A  +F E+  +G + +V  +N+L+ AL + G++++
Sbjct: 268 -GISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEE 326

Query: 431 ALY-----------------------------------LFGKMRGLNLEVNSLSFSIAIQ 455
           A +                                   LF  M    +E +++S+++ I 
Sbjct: 327 ANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLIN 386

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
            + +SG ++EA + + +++    +P+V  YN L  GL + G++  A  L  +   +  + 
Sbjct: 387 GYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLT- 445

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    Y + +  +C++    + +E+ + +      P+  I + +I G+CK   +E AR++
Sbjct: 446 PESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIAREL 505

Query: 576 FTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESK 621
           F  L    L  E N I Y  ++  H   K+  L  +   F G+E K
Sbjct: 506 FNRLSHEGL--EPNVITYTVMI--HGLCKSGQLENAKDLFLGMEEK 547



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 147/361 (40%), Gaps = 30/361 (8%)

Query: 104 GPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQ--------KGYKHNFASY 155
           G ++  E+ K R ++PD+VA    +            W G +        +G   N  ++
Sbjct: 257 GKELFLEM-KGRGISPDVVAYSSIIHG----MCHTGRWEGAKGLFNEMVDEGVHPNVVTF 311

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           N L   L +      A+ + +LM  +G                  PD F Y  +I     
Sbjct: 312 NVLIDALCKAGKMEEANHLLKLMIQRGE----------------SPDTFTYNTLIDGFCL 355

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
           E  +D    ++  M+   +E D ++Y  LI G CK GR+V   +L+REM    I+     
Sbjct: 356 EGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVIT 415

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           Y  L+ GL  EGKV  A +L  ++       +   YN ++ GLC+     +A +LF    
Sbjct: 416 YNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLE 475

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM 395
             D  P     N L+    +  +++   +L  ++                  + K  ++ 
Sbjct: 476 NHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLE 535

Query: 396 MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
            A D+F  ++ KG + ++  +N LM    +  E++K + L  +M   +   ++ + SI +
Sbjct: 536 NAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVV 595

Query: 455 Q 455
            
Sbjct: 596 D 596



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 139/313 (44%), Gaps = 12/313 (3%)

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
           G  K  +A  +   L+D      +  +N+++G + ++K++     L++      LAPDF 
Sbjct: 69  GHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFI 128

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFE 402
           T+N L+ C   + ++D  F L    E L+   + +   F   + G     RI  A  +  
Sbjct: 129 TLNILINCYCNLNKVD--FGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLR 186

Query: 403 ELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR------GLNLEVNSLSFSIAIQ 455
           ++   GY  +V  Y  L+  L   G    A+ L  +M       G+ ++ N + +   I 
Sbjct: 187 KMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIID 246

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
              + G I +  E   ++      P V AY+ +  G+C  G  + A  L  + + +    
Sbjct: 247 SLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMV-DEGVH 305

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    + + I  +C++G+ E+   +L  M Q G  P+    + +I G C  G +++AR +
Sbjct: 306 PNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDL 365

Query: 576 FTNLRERKLLTEA 588
           F ++  + + T+A
Sbjct: 366 FVSMESKGIETDA 378



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 107/269 (39%), Gaps = 20/269 (7%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           + KG + +  SYN L   YC S                  GR+ E  ++  +M      P
Sbjct: 370 ESKGIETDAVSYNVLINGYCKS------------------GRMVEAKKLYREMMCKEIMP 411

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
            V  Y  ++  L  E  +     ++ EMK   +  +   Y  L+ GLCK   +    ELF
Sbjct: 412 TVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELF 471

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             ++ +       I+  LI+GL    K+  A +L   L   G   ++  Y  +I GLC+ 
Sbjct: 472 HYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKS 531

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            Q + A  LF    +   AP+  T N L+    +   M    +LL +M +  FS  A   
Sbjct: 532 GQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTI 591

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYS 410
                L+ K+E+    L +      +G +
Sbjct: 592 SIVVDLLSKDEKYREYLHLLPTFPAQGQT 620


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 119/477 (24%), Positives = 220/477 (46%), Gaps = 26/477 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           +Q G+  N  SYN L Y L +    + A +V + M S+G                     
Sbjct: 184 RQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDT 243

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
             ++++LE+M     +P+++ YT  IRVL     +D    + + M+ +    DV+ Y  L
Sbjct: 244 GTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVL 303

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC  G++ +  EL+ +M+ +    D   Y  L+      G +        ++   GY
Sbjct: 304 IDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGY 363

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  Y  ++  LC+  + D+A+ + +V     + P+  T N L+     + R+D   +
Sbjct: 364 APDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALE 423

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
           L   ME L  +  A     F    GK      ALD FE++K +G   S+   N  + +L 
Sbjct: 424 LFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLA 483

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           E+G +++A  +F  +    L  +S+++++ ++C+ ++G I +A +   +++     P + 
Sbjct: 484 EMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDII 543

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
             N L   L K G +D A  +    L ++   PT   Y + I  + + G+  K +++   
Sbjct: 544 VVNSLIDTLYKAGRVDEAWQMFGR-LKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGS 602

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR----ERKLLTEANTIVYDEI 596
           M + GCPPN V  +A++  +CK+  ++ A K+F  +        +LT  NTI+Y  I
Sbjct: 603 MKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLT-YNTIIYGLI 658



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/448 (24%), Positives = 205/448 (45%), Gaps = 10/448 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I +    L KMR+     + ++Y  +I  L         L+V++ M  + ++  +  
Sbjct: 170 KGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKT 229

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L++ L +        +L  EM+  G+  +   Y + I  L   G++  A  +LK + 
Sbjct: 230 YSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTME 289

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D G   D+  Y  +I  LC   + DKA +L+         PD  T   L+      G ++
Sbjct: 290 DEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLE 349

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILM 419
              +  ++ME   ++            + K  ++  A D+ + ++ +G   ++  YN L+
Sbjct: 350 TVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLI 409

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             LL +  + +AL LF  M  L +   + S+ + I  + + GD  +A +   K+ +   +
Sbjct: 410 SGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIM 469

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           PS+AA N     L ++G I  A  +  D + N    P    Y + +    ++G+ +K  +
Sbjct: 470 PSIAACNASLYSLAEMGRIREAKDIFND-IHNCGLSPDSVTYNMMMKCYSKAGQIDKATK 528

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           +L EM  EGC P+ ++ +++I  + K G ++EA ++F  L++ KL   A T+V   ILI 
Sbjct: 529 LLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKL---APTVVTYNILIT 585

Query: 600 HMKKKTADLVLSGLKFFGLESKLKAKGC 627
            + K+    +L  L  FG    +K  GC
Sbjct: 586 GLGKEGK--LLKALDLFG---SMKESGC 608



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 195/440 (44%), Gaps = 29/440 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K++G   + A+ NA  Y L+                  GRI E  +I   +      PD 
Sbjct: 464 KKRGIMPSIAACNASLYSLAE----------------MGRIREAKDIFNDIHNCGLSPDS 507

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  M++  +    +D   ++  EM  +  E D++   +LI  L K GRV    ++F  
Sbjct: 508 VTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGR 567

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +K+  +      Y +LI GL  EGK+ KA DL   + +SG   +   +N+++  LC+   
Sbjct: 568 LKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDA 627

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            D A K+F      + +PD  T N ++    + GR    F    QM+K    ++ D    
Sbjct: 628 VDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKF---LSPDHVTL 684

Query: 384 FEFLVG--KEERIMMALDVFEELKGKG--YSSVPIYNILMGALLEIGEVKKALYLFGKM- 438
           +  L G  K+ R+  A+ +  E   +    +S  ++  LM  +L   E+++A+     + 
Sbjct: 685 YTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAEGLV 744

Query: 439 -RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE-MSQVPSVAAYNCLTKGLCKIG 496
              +  + N +   I + C  +    L+A +  +K  + +   P+  +YNCL  GL    
Sbjct: 745 CNSICQDDNLILPLIRVLCKQKKA--LDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCN 802

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
             +AA+ L  + + N    P  F Y L +    +S   +++ E+ NEM   GC PN +  
Sbjct: 803 ITEAALKLFVE-MKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITH 861

Query: 557 SAIISGMCKHGTLEEARKVF 576
           + IIS + K  ++ +A  ++
Sbjct: 862 NIIISALVKSNSINKALDLY 881



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 113/487 (23%), Positives = 209/487 (42%), Gaps = 36/487 (7%)

Query: 144  KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
            K+ G   N  ++NAL  CL +N+    A                L++  +M    C PDV
Sbjct: 604  KESGCPPNTVTFNALLDCLCKNDAVDLA----------------LKMFCRMTIMNCSPDV 647

Query: 204  FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
              Y  +I  L  E         + +MKK L    V  Y TL+ G+ K GRV    ++  E
Sbjct: 648  LTYNTIIYGLIKEGRAGYAFWFYHQMKKFLSPDHVTLY-TLLPGVVKDGRVEDAIKIVME 706

Query: 264  -MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
             + ++G+     ++G L+E ++ E ++ +A    + LV +    D  +   +I  LC+ K
Sbjct: 707  FVHQSGLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVLCKQK 766

Query: 323  QFDKAYKLFE-VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            +   A KLF+  T      P   + N L+         +   KL  +M+      A    
Sbjct: 767  KALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKN-----AGCCP 821

Query: 382  KFFEFLV-----GKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
              F + +     GK +RI    +++ E+  +G   ++  +NI++ AL++   + KAL L+
Sbjct: 822  NIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLY 881

Query: 436  GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             ++   +      ++   I   +++G   EA +   ++ +    P+ A YN L  G  K 
Sbjct: 882  YEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKA 941

Query: 496  GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
            G ++ A  L +  +      P    Y + +  +  +G  +  +    E+   G  P+ V 
Sbjct: 942  GNVNIACDLFKRMIKE-GIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVS 1000

Query: 556  CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADL---VLSG 612
             + +I+G+ K   LEEA  +F+ ++ R +  E  T  Y+ +++        D    +   
Sbjct: 1001 YNLMINGLGKSRRLEEALSLFSEMKNRGISPELYT--YNALILHFGNAGMVDQAGKMFEE 1058

Query: 613  LKFFGLE 619
            L+F GLE
Sbjct: 1059 LQFMGLE 1065



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 132/313 (42%), Gaps = 39/313 (12%)

Query: 177  LMDSQG---RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
            L+D+ G   RI E+ E+  +M    CKP++  +  +I  L    +++  L ++ E+    
Sbjct: 829  LLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGD 888

Query: 234  VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
                   Y  LI GL K GR     ++F EM +     + AIY +LI G    G V  AC
Sbjct: 889  FSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIAC 948

Query: 294  DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            DL K ++  G R DL  Y  ++  L    + D A   FE      L PD  + N ++   
Sbjct: 949  DLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMING- 1007

Query: 354  AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SV 412
                                              +GK  R+  AL +F E+K +G S  +
Sbjct: 1008 ----------------------------------LGKSRRLEEALSLFSEMKNRGISPEL 1033

Query: 413  PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
              YN L+      G V +A  +F +++ + LE N  +++  I+ H +SG+   A     K
Sbjct: 1034 YTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKK 1093

Query: 473  IIEMSQVPSVAAY 485
            ++ +   P+   +
Sbjct: 1094 MMIVGCSPNAGTF 1106



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 168/392 (42%), Gaps = 9/392 (2%)

Query: 168  FRAADQV-PELMDS---QGRIAEMLEILEKMRRN-LCKPDVFAYTAMIRVLAAERNLDAC 222
             + ++QV  ELM+    +  I E +   E +  N +C+ D      +IRVL  ++     
Sbjct: 713  LQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLI-LPLIRVLCKQKKALDA 771

Query: 223  LRVWEEMKKDL-VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
             +++++  K L       +Y  L+ GL          +LF EMK  G   +   Y +L++
Sbjct: 772  KKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLD 831

Query: 282  GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
                  ++ +  +L  +++  G + ++  +N II  L +    +KA  L+   +  D +P
Sbjct: 832  AHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSP 891

Query: 342  DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVF 401
               T  PL+    + GR +   K+  +M   +      +        GK   + +A D+F
Sbjct: 892  TPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLF 951

Query: 402  EELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
            + +  +G    +  Y IL+  L   G V  A++ F +++   L+ +++S+++ I    +S
Sbjct: 952  KRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKS 1011

Query: 461  GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
              + EA    +++      P +  YN L       G +D A  +  + L  +   P  F 
Sbjct: 1012 RRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEE-LQFMGLEPNVFT 1070

Query: 521  YALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
            Y   I    +SG  ++   V  +M   GC PN
Sbjct: 1071 YNALIRGHSKSGNKDRAFSVFKKMMIVGCSPN 1102


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 208/438 (47%), Gaps = 14/438 (3%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE------A 236
           RI+E   +  +M++  C P+   Y  +I+ L    N++  L++ +EM  D  +       
Sbjct: 176 RISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKP 235

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
            V+ Y  +I GLCK GR     ELF EMK  G++ D   Y  LI G    GK  ++  L 
Sbjct: 236 GVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLF 295

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            ++VD G + D+  ++ +I  LC+  +  +A KL EV +Q  + P+  T N L+     +
Sbjct: 296 DEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMV 355

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVP 413
           G +++  +L   M      +  D   +   + G  K  ++  A++++ E+   G S +V 
Sbjct: 356 GDLNSARELFLSMPSK--GLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVT 413

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            Y  L+  L + G+V  A  LFG M+   +  NS  + I +    ++  + EA E  N++
Sbjct: 414 TYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNEL 473

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
              +   ++  Y+CL  GLCK G+++ A  L    L      P    Y + I   C+ G+
Sbjct: 474 KSYNFKLNIENYSCLIDGLCKAGKLETAWELFEK-LSQEGLQPDVVTYNIMIHGFCKVGQ 532

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN--TI 591
            +    +  +M + GC P+ +  + ++ G C+   LEE  K+   + ++ +   A   TI
Sbjct: 533 VDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTI 592

Query: 592 VYDEILIEHMKKKTADLV 609
           V D +  +   KK  DL+
Sbjct: 593 VVDMLCKDEKYKKFVDLL 610



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 179/401 (44%), Gaps = 45/401 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR  E  E+ E+M+     PDV +Y+ +I         D    +++EM    V+ D++ +
Sbjct: 251 GREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTF 310

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI  LCK G+V    +L   M + GI+ +   Y  LI+G    G +  A +L   +  
Sbjct: 311 SVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPS 370

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   Y ++I G C+  +  +A  L+   +Q   +P+ +T   LL    + G++ +
Sbjct: 371 KGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGD 430

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
             KL   M+   + V+A+ + +  FL G  K + +  A+++F ELK   +  ++  Y+ L
Sbjct: 431 AKKLFGVMK--TYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCL 488

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L + G+++ A  LF K+    L+                                  
Sbjct: 489 IDGLCKAGKLETAWELFEKLSQEGLQ---------------------------------- 514

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P V  YN +  G CK+G++D A +L      N  + P    Y   +   C   + E++I
Sbjct: 515 -PDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCT-PDIIAYNTLLCGFCEGNKLEEVI 572

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           ++L++M Q+   PN   C+ ++  +CK    +E  K F +L
Sbjct: 573 KLLHKMVQKDVSPNAASCTIVVDMLCK----DEKYKKFVDL 609



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 116/463 (25%), Positives = 202/463 (43%), Gaps = 61/463 (13%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           +++  +  +MR     PD+F  + +   L     +   L     + +     +V+ Y TL
Sbjct: 108 SQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTL 167

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS-- 302
           I GLC   R+     LF  M++ G   +   YG LI+GL   G V  A  L K++++   
Sbjct: 168 IKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDAS 227

Query: 303 --GYRADLGI--YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEM 356
             G     G+  Y+ II GLC+V + D+A +LFE      + PD  + + L+   CCA  
Sbjct: 228 QYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCA-- 285

Query: 357 GRMDNFFKLLAQM-------EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG- 408
           G+ D    L  +M       + + FSV  D        + KE ++  A  + E +  +G 
Sbjct: 286 GKWDQSKHLFDEMVDQGVQPDMVTFSVLID-------TLCKEGKVTEAKKLLEVMIQRGI 338

Query: 409 YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
             ++  YN L+     +G++  A  LF  M    LE + +S++  I  + ++  + EA  
Sbjct: 339 VPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMN 398

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV----------------------- 505
            +N+++++ + P+V  Y  L KGL + G++  A  L                        
Sbjct: 399 LYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLC 458

Query: 506 -RDCLGNVASGPTEFK----------YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
             DCL        E K          Y+  I  +C++G+ E   E+  +++QEG  P+ V
Sbjct: 459 KNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVV 518

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             + +I G CK G ++ A  +F  + E       + I Y+ +L
Sbjct: 519 TYNIMIHGFCKVGQVDNANILFEKMEENG--CTPDIIAYNTLL 559



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/410 (21%), Positives = 178/410 (43%), Gaps = 35/410 (8%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           +     + M R+   P + ++  ++  LA   +      ++ EM+   +  D+     L 
Sbjct: 74  QAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILA 133

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
             LC   RV         +   G + +   Y  LI+GL  E ++ +A  L   +   G  
Sbjct: 134 NCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCT 193

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            +   Y ++I GLC+    + A KL +  + D                       + + +
Sbjct: 194 PNAVTYGTLIKGLCQTGNVNIALKLHKEMLND----------------------ASQYGV 231

Query: 366 LAQMEKLKFSVAAD-LEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALL 423
             +   + +S+  D L K     VG+E+    A ++FEE+K +G    V  Y+ L+    
Sbjct: 232 NCKPGVITYSIIIDGLCK-----VGREDE---AKELFEEMKAQGMIPDVISYSTLIHGFC 283

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
             G+  ++ +LF +M    ++ + ++FS+ I    + G + EA +    +I+   VP++ 
Sbjct: 284 CAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLI 343

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            YN L  G C +G++++A  L    + +    P E  Y   I   C++ + ++ + + NE
Sbjct: 344 TYNSLIDGFCMVGDLNSARELFLS-MPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNE 402

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
           M Q G  PN      ++ G+ + G + +A+K+F  ++   +   AN+ +Y
Sbjct: 403 MLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGV--SANSQIY 450



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 35/226 (15%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ E  ++LE M +    P++  Y ++I       +L++   ++  M    +E D ++
Sbjct: 320 EGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEIS 379

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG---------- 290
           Y TLI G CK  +V     L+ EM + G   +   YG L++GL  +GKVG          
Sbjct: 380 YTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMK 439

Query: 291 -------------------------KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
                                    +A +L  +L    ++ ++  Y+ +I GLC+  + +
Sbjct: 440 TYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLE 499

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
            A++LFE   Q+ L PD  T N ++    ++G++DN   L  +ME+
Sbjct: 500 TAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEE 545



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 80/165 (48%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ +  ++   M+      +   Y   +  L     L   + ++ E+K    + ++  
Sbjct: 425 KGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIEN 484

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI GLCK G++    ELF ++ + G+  D   Y ++I G    G+V  A  L + + 
Sbjct: 485 YSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKME 544

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           ++G   D+  YN+++ G C   + ++  KL    VQ D++P+ ++
Sbjct: 545 ENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAAS 589


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 137/529 (25%), Positives = 232/529 (43%), Gaps = 53/529 (10%)

Query: 67  QKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVL 126
           Q   + P D  T+    H    AR + DA          QV+ E+   R V  +    V+
Sbjct: 30  QMNDAHPPDFLTYTKLVHGLSKARRLRDAV---------QVLQEMVSARHVPDNTTLTVV 80

Query: 127 --------KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM 178
                   +V++   L  +  H     +G   N  +Y+AL   L +              
Sbjct: 81  VQSLCLGDRVDDARELVEEMLH-----RGMAANAITYSALVDGLCKCE------------ 123

Query: 179 DSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
               R+ E + ++E M    C P V  Y ++I      R +D      E+M  +    D+
Sbjct: 124 ----RLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDI 179

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + Y  LI G CK   V RG EL  E+   G   D   Y  +I+GL   G++  A D+ ++
Sbjct: 180 ITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEE 239

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +  +        YNS+IGG CR    D+A +L    V D  APD  T   L+    +MGR
Sbjct: 240 MSCAPTAI---TYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGR 296

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIY 415
           +D+ ++L  QM   K S   D+  F   + G   E R+  AL++ EE+  +G   ++  Y
Sbjct: 297 LDDAYELFQQMVANKLS--PDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTY 354

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI-I 474
           N ++    +  +V+KA  L    R      N+++++I +     +G   +A +  +++  
Sbjct: 355 NCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNS 414

Query: 475 EMSQVP-SVAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVCRS 531
           E    P SVA Y  +   LC+ G  D A+    + +  G V   P    +A  +  +C++
Sbjct: 415 EGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYV---PAAATFATVVFALCKA 471

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
            + ++  E+L EM + G  P    C A++S  C+ G +++A ++ + LR
Sbjct: 472 HQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELR 520



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 103/415 (24%), Positives = 177/415 (42%), Gaps = 45/415 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+   L +  +M  +   PD   YT ++  L+  R L   ++V +EM       D    
Sbjct: 19  GRLRHALGVYRQMN-DAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTL 77

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++  LC G RV    EL  EM   G+  +   Y  L++GL    ++ +A  L++ + +
Sbjct: 78  TVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAE 137

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G    +  YNSII G CR ++ D+A+   E  V +   PD  T   L+    +   +  
Sbjct: 138 RGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGR 197

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIYNILM 419
             +LL ++ +  F+   D+  +   + G  K  R+  A+D+FEE+      +   YN L+
Sbjct: 198 GLELLGEVTRRGFT--PDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCA--PTAITYNSLI 253

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
           G     G++ +A+ L GKM                                   ++    
Sbjct: 254 GGYCRAGDMDEAIRLLGKM-----------------------------------VDDKCA 278

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P V  Y  L    CK+G +D A  L +  + N  S P    +   +  +C  G  E  +E
Sbjct: 279 PDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLS-PDVVTFTSLVDGLCGEGRMEDALE 337

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           +L E+T+ GCPP     + ++ G CK   + +A ++  + R R  +   NT+ Y+
Sbjct: 338 LLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFV--PNTVTYN 390



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 145/313 (46%), Gaps = 10/313 (3%)

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
           ++ V+I GL   G++  A  + + + D+ +  D   Y  ++ GL + ++   A ++ +  
Sbjct: 7   LHNVVIGGLCRAGRLRHALGVYRQMNDA-HPPDFLTYTKLVHGLSKARRLRDAVQVLQEM 65

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEE 392
           V     PD +T+  ++       R+D+  +L+ +M  L   +AA+   +   + G  K E
Sbjct: 66  VSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEM--LHRGMAANAITYSALVDGLCKCE 123

Query: 393 RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
           R+  A+ + E +  +G + +V  YN ++        V +A     +M       + ++++
Sbjct: 124 RLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYT 183

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
             I    +S D+    E   ++      P +  Y+ +  GLCK G +  A+    D    
Sbjct: 184 ALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAV----DIFEE 239

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
           ++  PT   Y   I   CR+G+ ++ I +L +M  + C P+ V  + ++S  CK G L++
Sbjct: 240 MSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDD 299

Query: 572 ARKVFTNLRERKL 584
           A ++F  +   KL
Sbjct: 300 AYELFQQMVANKL 312


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 195/403 (48%), Gaps = 9/403 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+++ +E+LE M+   C PDV  YT ++  L  E  + A   V  EM       +++ Y 
Sbjct: 206 RVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYN 265

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +L+ GLC+  RV     L R+M   G   +   YG LI+GL   G+V  AC +L D++D 
Sbjct: 266 SLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDK 325

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   DL IYN +I GLC+  Q D++  L    V   + PD  T + ++       R+D  
Sbjct: 326 GGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEA 385

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILM 419
            +LL  ++        D+  +   + G  K  ++  A D++E + G G  + V  Y+ L+
Sbjct: 386 CRLLLYVK--SRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLI 443

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L + G V +A  L  +M  +    ++++++  I+   +   + EA E   ++   +  
Sbjct: 444 DGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCA 503

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN-VASGPTEFK---YALTILHVCRSGEAE 535
           PS   YN L  G+C++  +D+A++L+       VA+G T      Y+  I  +C++G   
Sbjct: 504 PSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVA 563

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
           + ++   EM   G  P+ +  S ++ G+ K   L E R +  +
Sbjct: 564 EALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLD 606



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 190/424 (44%), Gaps = 48/424 (11%)

Query: 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
           +C+PDV+ Y A++R       +D   R ++EM+   +  +V     LI GLCK  R +  
Sbjct: 4   ICQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDA 63

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
              FR M+ +GI+ D  IY  L+ GL  E ++ +A  +L ++ D G   ++  YNS+I G
Sbjct: 64  LRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDG 123

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-----EKL 372
           LC+  + D+A +LFE     + +P   T N LL      G+++    L  +M       +
Sbjct: 124 LCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDM 183

Query: 373 KFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-------------------- 410
               + ++  +   + G  K  R+  A+++ E +K +G S                    
Sbjct: 184 DDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVA 243

Query: 411 -------------SVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
                         VP    YN L+  L     V  AL L   M       N +++   I
Sbjct: 244 AAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLI 303

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
               + G + +AC     +I+    P +  YN L  GLCK  ++D ++ L+R     V+ 
Sbjct: 304 DGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRR---AVSG 360

Query: 515 G--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           G  P    Y+  I  +CRS   ++   +L  +   GCPP+ ++ S +I G+CK G ++EA
Sbjct: 361 GIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEA 420

Query: 573 RKVF 576
             ++
Sbjct: 421 FDLY 424



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 122/496 (24%), Positives = 218/496 (43%), Gaps = 24/496 (4%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE 176
           VT + + + L   N P  A + F    K      +  +YN L      + LFR      +
Sbjct: 115 VTYNSLIDGLCKNNEPDRAQELFEHM-KSVECSPSMVTYNTLL-----DGLFRTG----K 164

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           L  +     EML+       + C P+V  Y+ +I  L     +   + + E MK      
Sbjct: 165 LERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSP 224

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           DV+ Y  L+ GLCK  +V    E+ REM + G + +   Y  L+ GL    +V  A  L+
Sbjct: 225 DVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALM 284

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
           +D+   G   ++  Y ++I GLC+V +   A  +    +     PD    N L+    + 
Sbjct: 285 RDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKA 344

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVP 413
            ++D    LL +   +   +  D+  +   + G  +  R+  A  +   +K +G    V 
Sbjct: 345 DQVDESIALLRR--AVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVI 402

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           +Y+ L+  L + G+V +A  L+  M G   + + +++S  I    ++G + EA     ++
Sbjct: 403 LYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARM 462

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           + M   PS   YN L KGLC +  +D A+ LV + +      P+   Y + I  +CR   
Sbjct: 463 VRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEE-MERSNCAPSAVTYNILIHGMCRMER 521

Query: 534 AEKIIEVLNE-----MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
            +  + +L +     +   G   + +  S++I G+CK G + EA   F  + +  ++   
Sbjct: 522 VDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVI--P 579

Query: 589 NTIVYDEILIEHMKKK 604
           + I Y  IL+E +KK 
Sbjct: 580 DHITY-SILLEGLKKS 594



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 167/387 (43%), Gaps = 33/387 (8%)

Query: 110 ELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQK----GYKHNFASYNALAYCLSRN 165
           E  K R  +PD++   + V+     +     W   ++    G   N  +YN+L + L R 
Sbjct: 215 ESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRA 274

Query: 166 NLFRAADQVPELMDSQ---------------------GRIAEMLEILEKMRRNLCKPDVF 204
              R +D +  + D                       GR+ +   +L  M      PD+ 
Sbjct: 275 R--RVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLM 332

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  +I  L     +D  + +        ++ DV+ Y ++I GLC+  R+     L   +
Sbjct: 333 IYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYV 392

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K  G   D  +Y  LI+GL   GKV +A DL + +   G  AD+  Y+++I GLC+  + 
Sbjct: 393 KSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRV 452

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           D+A+ L    V+    P   T N L+    ++  +D   +L+ +ME+   + +A      
Sbjct: 453 DEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNIL 512

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSS------VPIYNILMGALLEIGEVKKALYLFGKM 438
              + + ER+  A+ + E+ K +  ++         Y+ L+  L + G V +AL  F +M
Sbjct: 513 IHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEM 572

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILE 465
               +  + +++SI ++   +S D+ E
Sbjct: 573 IDNGVIPDHITYSILLEGLKKSKDLHE 599


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 188/394 (47%), Gaps = 4/394 (1%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PDV  Y+ +I  L     +   L + EEM +  V  DV  Y  ++  LC+ G+V    E
Sbjct: 7   EPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADE 66

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           LF +M E G   +   Y  LI GL  +  + +A  LL+++   GY  D   YN+I+ GLC
Sbjct: 67  LFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLC 126

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           R+ +  +A + F+       +PD    N LL    + G++   + L   M+     VA D
Sbjct: 127 RMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPD 186

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFG 436
           L  +   + G  + E+   A+ +F+++  KGY      YN ++  L     + +A  +F 
Sbjct: 187 LITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFK 246

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           KM       N  ++SI +  H   G++    E + ++ E    P V   N +   LCK  
Sbjct: 247 KMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAK 306

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           ++D A  ++ + +  + + P    Y + +  +C++   +K  E+ + M   GC P+ V  
Sbjct: 307 KVDDAHKVLEE-MSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSY 365

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           S +++G+CK   + +AR +F  + ERKL+ +  T
Sbjct: 366 SVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVT 399



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 202/411 (49%), Gaps = 8/411 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E  E+  KM    C  +  AY A+I  L  + N++   ++ EEM     E D + Y
Sbjct: 59  GKVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITY 118

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK--DL 299
            T++ GLC+ G+V    + F  M   G   D   Y  L++ L  EGKV +A  L K  D+
Sbjct: 119 NTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDM 178

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D     DL  YN++I G CRV++ D+A KLF+  +     PD  T N +L+  A    M
Sbjct: 179 ADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNM 238

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA--LDVFEELKGKGYS-SVPIYN 416
           D   ++  +M  +    A +   +   L G      MA  L+++EE+  K +S  V + N
Sbjct: 239 DEAEEMFKKM--VDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCN 296

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++  L +  +V  A  +  +M  +    + ++++I +    ++  + +A E  + +++ 
Sbjct: 297 AVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDN 356

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P + +Y+ +  GLCK  ++  A +L  D +      P    + + +  +C++G+ ++
Sbjct: 357 GCAPDIVSYSVVLNGLCKTNKVHDARVLF-DRMIERKLVPDVVTFNILMDGLCKAGKLDE 415

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
             ++L+ M++    P+ V C+ ++ G+C+    +EA ++F  + E+  + +
Sbjct: 416 AKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVAD 466



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 215/482 (44%), Gaps = 27/482 (5%)

Query: 106 QVVTELSKLRRVTPDLVAEVLKVE-----NNPTLASKFFHWAGKQKGYKHNFASYNALAY 160
           ++V E+++ + V PD+    + V+          A + FH    ++G   N  +YNAL  
Sbjct: 31  EMVEEMTE-KGVNPDVATYTIIVDRLCRAGKVDEADELFHKM-IERGCSANTVAYNALIN 88

Query: 161 CLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLD 220
            L ++     A ++ E M S+G                 +PD   Y  ++  L     + 
Sbjct: 89  GLCKDENIERAYKLLEEMASKGY----------------EPDNITYNTILSGLCRMGKVS 132

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR--EMKENGILIDRAIYGV 278
              + ++ M       DV+AY  L+  L K G+V     LF+  +M +  +  D   Y  
Sbjct: 133 EAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNT 192

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           LI+G     K  +A  L KD++  GY  D   YNSI+ GL R    D+A ++F+  V   
Sbjct: 193 LIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSG 252

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL 398
            AP+ +T + +L     +G M    +L  +M + +FS    L      ++ K +++  A 
Sbjct: 253 CAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAH 312

Query: 399 DVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
            V EE+   G    V  YNIL+  L +   V KA  LF  M       + +S+S+ +   
Sbjct: 313 KVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGL 372

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
            ++  + +A    +++IE   VP V  +N L  GLCK G++D A  L+ D +      P 
Sbjct: 373 CKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLL-DVMSEHNVLPD 431

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
                  +  +CR    ++ + +   M ++G   + +  + +++G+C+ G L +A   F 
Sbjct: 432 GVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFK 491

Query: 578 NL 579
           ++
Sbjct: 492 SM 493



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 165/368 (44%), Gaps = 35/368 (9%)

Query: 103 WGPQVVTELSKLRRVTPDLVA------EVLKVENNPTLASKFFHWAGKQKGYKHNFASYN 156
           WG     +++  R+V PDL+          +VE     A K F      KGY  +  +YN
Sbjct: 170 WGLFKTMDMAD-RKVAPDLITYNTLIDGFCRVEKTDE-AMKLFKDV-IAKGYMPDTVTYN 226

Query: 157 ALAYCLSR-NNLFRAADQVPELMDSQ------------------GRIAEMLEILEKMRRN 197
           ++   L+R +N+  A +   +++DS                   G +A  LE+ E+M   
Sbjct: 227 SILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEK 286

Query: 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
              PDV    A+I +L   + +D   +V EEM K     DV+ Y  L+ GLCK   V + 
Sbjct: 287 RFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKA 346

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
           HELF  M +NG   D   Y V++ GL    KV  A  L   +++     D+  +N ++ G
Sbjct: 347 HELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDG 406

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
           LC+  + D+A  L +V  + ++ PD  T   L+       R D   +L   M  ++    
Sbjct: 407 LCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYM--VEKGTV 464

Query: 378 ADLEKFFEFLVG--KEERIMMALDVFEEL---KGKGYSSVPIYNILMGALLEIGEVKKAL 432
           AD+      L G  +E ++  AL  F+ +    G+    V  Y  L+ AL+E G V +A+
Sbjct: 465 ADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAV 524

Query: 433 YLFGKMRG 440
             F +M G
Sbjct: 525 DYFQQMTG 532



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 154/323 (47%), Gaps = 12/323 (3%)

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M E G   D   Y  +I GL   GKV +A ++++++ + G   D+  Y  I+  LCR  +
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            D+A +LF   ++   + +    N L+    +   ++  +KLL +M    +    D   +
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYE--PDNITY 118

Query: 384 FEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
              L G  +  ++  A   F+ +  +GYS  V  YN L+ AL + G+V +A  LF  M  
Sbjct: 119 NTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDM 178

Query: 441 LNLEV--NSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            + +V  + ++++  I   C VE  D  EA +    +I    +P    YN +  GL +  
Sbjct: 179 ADRKVAPDLITYNTLIDGFCRVEKTD--EAMKLFKDVIAKGYMPDTVTYNSILLGLARKS 236

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            +D A  + +  + +    P    Y++ +   CR G   + +E+  EMT++   P+ ++C
Sbjct: 237 NMDEAEEMFKKMV-DSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLC 295

Query: 557 SAIISGMCKHGTLEEARKVFTNL 579
           +A+I  +CK   +++A KV   +
Sbjct: 296 NAVIDMLCKAKKVDDAHKVLEEM 318



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCK--PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           +G++A+ L   + M ++  +  PDV  YT ++  L     +D  +  +++M       D 
Sbjct: 480 EGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDY 539

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           +AY TL+ GL K GR ++   L + MKE G L D
Sbjct: 540 VAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 573



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 2/127 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE--ADVMA 240
           R  E + + + M       DV  +  ++  L  E  L   L  ++ M K   E   DV+ 
Sbjct: 447 RTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVT 506

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TL+  L + GRV +  + F++M  +G   D   Y  L+ GL  +G+  +A  L + + 
Sbjct: 507 YTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMK 566

Query: 301 DSGYRAD 307
           + G+ +D
Sbjct: 567 EKGFLSD 573


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 138/579 (23%), Positives = 248/579 (42%), Gaps = 31/579 (5%)

Query: 45  ASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRK--NQFQ 102
           AS PH +    +++ +   +   +T SP ++     L    +   R + + F +    F+
Sbjct: 15  ASSPHLAR--RLKQTENEIVQMFRTPSPRNEDAVAALSPRYTNSVRVLDERFIRILKIFK 72

Query: 103 WGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           WGP     L  L  RV   LV EV+K +    +  +FF WA K++ Y+H+ ++Y AL +C
Sbjct: 73  WGPDAERALEVLMLRVDHWLVREVMKTDVGVNVKMQFFRWAAKKRNYQHDTSTYMALIHC 132

Query: 162 LSR-----------NNLFRAA---------DQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           L               + R+           QV  ++ +   I + + I  +++   C+P
Sbjct: 133 LELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQP 192

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKD-LVEADVMAYVTLIMGLCKGGRVVRGHEL 260
              AY +MI +L  E   +    ++ EM  +     D + Y  LI   CK GR      L
Sbjct: 193 TAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRL 252

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             EMKENG+     IY ++I        V  A  L +++     R D+  Y  +I GL +
Sbjct: 253 LNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGK 312

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK-FSVAAD 379
             + D+AY  +    ++D  PD   +N ++    + GR+D+  KL  +M           
Sbjct: 313 AGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVT 372

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKM 438
                + L   + R+      FE +KG G S  P  Y+IL+    +   ++KA+ L  +M
Sbjct: 373 YNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEM 432

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
                     ++   I    ++     ACE   ++ E     S   Y  + K L K G +
Sbjct: 433 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRL 492

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D A+ L  D +  +   P  + Y   +  + R+   ++ +  + +M + GC P+    + 
Sbjct: 493 DDAINLF-DEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNI 551

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           I++G+ K G    A ++ TN++   +  +A  + Y+ +L
Sbjct: 552 ILNGLAKTGGPHRAMEMLTNMKNSTIKPDA--VSYNTVL 588



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 159/380 (41%), Gaps = 38/380 (10%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L + E+MR   C+PDVF YT +IR L     +D     + EM+++  + D +    +I  
Sbjct: 285 LSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINF 344

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV-GEGKVGKACDLLKDLVDSGYRA 306
           L K GR+  G +LF EM  +  + +   Y  +I+ L   + +V +     + +  SG   
Sbjct: 345 LGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISP 404

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
               Y+ +I G C+  + +KA  L E   +    P  +    L+    +  R D   +L 
Sbjct: 405 SPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELF 464

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
            ++++   S +A +       +GK  R+  A+++F+E+   G + +V  YN LM  L   
Sbjct: 465 QELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARA 524

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
             + +AL    KM+                                   E   +P + +Y
Sbjct: 525 CMLDEALTTMRKMQ-----------------------------------EHGCLPDINSY 549

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           N +  GL K G    AM ++ + + N    P    Y   +  +  +G  E+  E++ EM 
Sbjct: 550 NIILNGLAKTGGPHRAMEMLTN-MKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMN 608

Query: 546 QEGCPPNEVICSAIISGMCK 565
             G   + +  S+I+  + K
Sbjct: 609 ALGFEYDLITYSSILEAIGK 628



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 11/175 (6%)

Query: 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTA 208
           K N  S +A  Y +   +L +A           GR+ + + + ++M +  C P+V+AY A
Sbjct: 468 KENCGSSSARVYAVMIKHLGKA-----------GRLDDAINLFDEMSKLGCTPNVYAYNA 516

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           ++  LA    LD  L    +M++     D+ +Y  ++ GL K G   R  E+   MK + 
Sbjct: 517 LMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNST 576

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           I  D   Y  ++  L   G   +A +L+K++   G+  DL  Y+SI+  + +V Q
Sbjct: 577 IKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKVDQ 631



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 85/192 (44%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           RI + + +LE+M      P   AY ++I  L   +  D    +++E+K++   +    Y 
Sbjct: 421 RIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYA 480

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            +I  L K GR+     LF EM + G   +   Y  L+ GL     + +A   ++ + + 
Sbjct: 481 VMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEH 540

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D+  YN I+ GL +     +A ++        + PD  + N +L   +  G  +  
Sbjct: 541 GCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEA 600

Query: 363 FKLLAQMEKLKF 374
            +L+ +M  L F
Sbjct: 601 AELMKEMNALGF 612


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 226/489 (46%), Gaps = 40/489 (8%)

Query: 126 LKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRN-NLFRAADQVPELMDS---- 180
           ++  + P LA +FF WAG+Q GYKH+  SYN L   L ++ + FR      +L+ S    
Sbjct: 1   MRRSSRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSP 60

Query: 181 --------------QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVW 226
                          G+    LE L  +      PDV+ +  +I  L  + N D  ++++
Sbjct: 61  NLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLF 120

Query: 227 EEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG--ILIDRAIYGVLIE-GL 283
           E M+   V  D+  Y T+I GLCK G + +  EL  EM   G     D   Y  LI  G+
Sbjct: 121 ENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGI 180

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
             +G V +A ++L  +  +G   D+  YNSII  LC   +  +A ++ +       +PD 
Sbjct: 181 CKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM---SCSPDL 237

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVF 401
            T N LL    + G +    ++L +M   + ++  D+  +   + G  +  ++ +A  + 
Sbjct: 238 VTFNTLLDGFCKAGMLPRALEVLEEM--CRENILPDVITYTILVNGLCRVGQVQVAFYLL 295

Query: 402 EELKGKGY-SSVPIYNILMGALLEIGEVKKALYL---------FGKMRGLNLEVNSLSFS 451
           EE+  +GY   V  Y  L+  L + GE+++A  L           +M  +N+     +++
Sbjct: 296 EEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYN 355

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
           I +   ++ G I +A    + ++    VP V  YN L  GLCK   +  A  L  D + +
Sbjct: 356 IVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLA-DEMAS 414

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
           +   P +      +  +CR G  +    ++ EM+++   PN V+ +++I G+CK   +++
Sbjct: 415 LGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDD 474

Query: 572 ARKVFTNLR 580
           A  V   +R
Sbjct: 475 ACVVLDAMR 483



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 166/380 (43%), Gaps = 45/380 (11%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL-AAERNLDACLRVWEEMKKDLVEADVM 239
            G + E LEIL+ M+     PDV  Y ++I  L  A R ++A     E +K      D++
Sbjct: 183 DGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAA----EILKTMSCSPDLV 238

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            + TL+ G CK G + R  E+  EM    IL D   Y +L+ GL   G+V  A  LL+++
Sbjct: 239 TFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEI 298

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN---PLLVCCAEM 356
           V  GY  D+  Y S++ GLC+  + ++A+KL +     ++  +  ++N   PL      +
Sbjct: 299 VRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVL 358

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIY 415
           G +                              K+  I  A+ +  +L  +GY   V  Y
Sbjct: 359 GGLI-----------------------------KDGSISKAVSLISDLVARGYVPDVVTY 389

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+  L +   V++A  L  +M  L    N ++    +      G + +A    + ++E
Sbjct: 390 NTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDA---WSLVVE 446

Query: 476 MSQ---VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           MS+    P+V  Y  L  GLCK   +D A  +V D +        +F Y   I+ +   G
Sbjct: 447 MSRKRHAPNVVVYTSLIDGLCKSDRMDDA-CVVLDAMRGQGVALDDFAYRKLIVSMIHGG 505

Query: 533 EAEKIIEVLNEMTQEGCPPN 552
              + + + +EM   G  P+
Sbjct: 506 RVAEAMAMYDEMVARGFLPD 525



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 183/406 (45%), Gaps = 52/406 (12%)

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
           ++D  + DV +Y  L+  L K G   R  ++++++  +G   +   + +LI G    G+ 
Sbjct: 19  EQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQA 78

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            +A + L+ L +     D+ I+N +I GL +    D+A KLFE      + PD  T N +
Sbjct: 79  TRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTV 138

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY 409
           +    + G ++   +LL +M +                                  GK  
Sbjct: 139 ISGLCKSGNLEKARELLEEMIRRG--------------------------------GKSA 166

Query: 410 SSVPIYNILMGA-LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
             +  YN L+ A + + G+V++AL +   M+      + ++++  I     +G ++EA E
Sbjct: 167 PDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAE 226

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-CLGNVASGPTEFKYALTILH 527
               +  MS  P +  +N L  G CK G +  A+ ++ + C  N+   P    Y + +  
Sbjct: 227 I---LKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENIL--PDVITYTILVNG 281

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           +CR G+ +    +L E+ ++G  P+ +  ++++ G+CK G +EEA K+   +  R++L E
Sbjct: 282 LCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAE 341

Query: 588 ANTIVYDEILIEHMKKKTADLVLSGL-------KFFGLESKLKAKG 626
             +I     L       T ++VL GL       K   L S L A+G
Sbjct: 342 MVSINMVPPLF------TYNIVLGGLIKDGSISKAVSLISDLVARG 381



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 7/230 (3%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++GY  +  +Y +L   L ++     A ++ + M ++  +AEM+ I      N+  P +F
Sbjct: 300 RQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSI------NMVPP-LF 352

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  ++  L  + ++   + +  ++       DV+ Y TLI GLCK  RV    +L  EM
Sbjct: 353 TYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEM 412

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              G   +    G ++ GL   G+V  A  L+ ++    +  ++ +Y S+I GLC+  + 
Sbjct: 413 ASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRM 472

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
           D A  + +      +A D      L+V     GR+     +  +M    F
Sbjct: 473 DDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGF 522



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 21/147 (14%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS-------------------QGRIAE 186
           +GY  +  +YN L   L + N  R A  + + M S                    GR+ +
Sbjct: 380 RGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDD 439

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLA-AERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
              ++ +M R    P+V  YT++I  L  ++R  DAC+ V + M+   V  D  AY  LI
Sbjct: 440 AWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACV-VLDAMRGQGVALDDFAYRKLI 498

Query: 246 MGLCKGGRVVRGHELFREMKENGILID 272
           + +  GGRV     ++ EM   G L D
Sbjct: 499 VSMIHGGRVAEAMAMYDEMVARGFLPD 525



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 2/170 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA-AERNLDACLRVWEEMKKDLVEADVM 239
            G I++ + ++  +      PDV  Y  +I  L  A R  +AC  + +EM       + +
Sbjct: 364 DGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREAC-DLADEMASLGCFPNDV 422

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
              +++ GLC+ GRV     L  EM       +  +Y  LI+GL    ++  AC +L  +
Sbjct: 423 TLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAM 482

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
              G   D   Y  +I  +    +  +A  +++  V     PD ST   L
Sbjct: 483 RGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 532


>gi|356541510|ref|XP_003539218.1| PREDICTED: uncharacterized protein LOC100777583 [Glycine max]
          Length = 603

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/156 (57%), Positives = 114/156 (73%), Gaps = 3/156 (1%)

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL 398
           L P   +++ LL+   E  RMD FFKLL QM+KL F V ADL KFF  LV  E++ ++AL
Sbjct: 375 LEPLARSLSNLLLALKE-NRMDEFFKLLEQMQKLDFPVIADLPKFFSVLV--EKKPIIAL 431

Query: 399 DVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV 458
           + F +LK KG+ SV IYNILM +L +IGEVKK L LF +M+GL+L+ +S ++SI I C V
Sbjct: 432 ETFVQLKEKGHVSVKIYNILMDSLHKIGEVKKVLSLFDEMKGLSLKPDSFAYSIVILCLV 491

Query: 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           E G+I EAC CH KIIEMS +PSVAAY+ LTKGLCK
Sbjct: 492 ELGEIKEACACHTKIIEMSCIPSVAAYSSLTKGLCK 527



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           SV  YN L   L KIGE+   + L  +  G ++  P  F Y++ IL +   GE ++    
Sbjct: 444 SVKIYNILMDSLHKIGEVKKVLSLFDEMKG-LSLKPDSFAYSIVILCLVELGEIKEACAC 502

Query: 541 LNEMTQEGCPPNEVICSAIISGMCK 565
             ++ +  C P+    S++  G+CK
Sbjct: 503 HTKIIEMSCIPSVAAYSSLTKGLCK 527



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + R+ E  ++LE+M++ L  P +        VL  ++ + A L  + ++K+      V  
Sbjct: 391 ENRMDEFFKLLEQMQK-LDFPVIADLPKFFSVLVEKKPIIA-LETFVQLKEK-GHVSVKI 447

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+  L K G V +   LF EMK   +  D   Y ++I  LV  G++ +AC     ++
Sbjct: 448 YNILMDSLHKIGEVKKVLSLFDEMKGLSLKPDSFAYSIVILCLVELGEIKEACACHTKII 507

Query: 301 DSGYRADLGIYNSIIGGLCRVKQF 324
           +      +  Y+S+  GLC+   F
Sbjct: 508 EMSCIPSVAAYSSLTKGLCKRCWF 531


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 145/584 (24%), Positives = 238/584 (40%), Gaps = 76/584 (13%)

Query: 45  ASEPHQSPPFNVQKWDPHYLPNQKTQS-----PPSDPKTFQLQRHLSPIARFITDAFRK- 98
           +S PH +       W      NQ  Q      P S+     ++R  +   R + + F + 
Sbjct: 11  SSSPHLA-------WRVKQTENQIVQMFRPLVPRSEEAVAPIERRYTRSVRVMDERFIRI 63

Query: 99  -NQFQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYN 156
              F+WGP     L  L  +V   LV EV+K +    +  +FF WA K++ Y+H+ ++Y 
Sbjct: 64  LKIFKWGPDAEKALEVLMLKVDHWLVREVMKTDVGVNVKMQFFRWAAKKRNYEHDTSTYM 123

Query: 157 ALAYCLS----------------RNNLFRAA----DQVPELMDSQGRIAEMLEILEKMRR 196
           AL  CL                 RN +          +  ++ +   I++ + I  +++ 
Sbjct: 124 ALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKV 183

Query: 197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD-LVEADVMAYVTLIMGLCKGGRVV 255
             C+P   AY +MI +L  E   +    ++ EM  +     D + Y  LI   CK GR  
Sbjct: 184 RKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQD 243

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
               L  EMK+NG+     IY +LI        V  A  L +++     R D+  Y  +I
Sbjct: 244 SAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELI 303

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK-F 374
            GL +  +FD+AY  F    ++   PD   +N ++    + GR+D+  KL  +M  L+  
Sbjct: 304 RGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCI 363

Query: 375 SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALY 433
                     + L   + RI      FE +KG G S  P  Y+IL+    +    +KA+ 
Sbjct: 364 PSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMM 423

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           L  +M                                    E    P  AAY  L   L 
Sbjct: 424 LLEEMD-----------------------------------EKGFPPCPAAYCSLIDALG 448

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           K    D A  L ++   N  S      YA+ I H+ ++G  +  + + +EM + GC PN 
Sbjct: 449 KAKRYDIAHELFQELKENCGSSSARV-YAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNV 507

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
              +A++SG+ + G L+EA      ++E   + + N+  Y+ IL
Sbjct: 508 YAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINS--YNIIL 549



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 93/198 (46%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           +  L +S+ RI+E+    E+M+ +   P  F Y+ +I         +  + + EEM +  
Sbjct: 373 IKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKG 432

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
                 AY +LI  L K  R    HELF+E+KEN       +Y V+I+ L   G++  A 
Sbjct: 433 FPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAV 492

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           +L  ++   G   ++  YN+++ GL R    D+A        +    PD ++ N +L   
Sbjct: 493 NLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGL 552

Query: 354 AEMGRMDNFFKLLAQMEK 371
           A+ G      ++L+ M++
Sbjct: 553 AKTGGPHRAMEMLSNMKQ 570



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 86/192 (44%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  + + +LE+M      P   AY ++I  L   +  D    +++E+K++   +    Y 
Sbjct: 417 RTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYA 476

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            +I  L K GR+     LF EM + G   +   Y  L+ GL   G + +A   ++ + + 
Sbjct: 477 VMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEH 536

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D+  YN I+ GL +     +A ++     Q  + PD  + N +L   +  G  +  
Sbjct: 537 GCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEA 596

Query: 363 FKLLAQMEKLKF 374
            KL+ +M  L F
Sbjct: 597 AKLMKEMNVLGF 608



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 11/175 (6%)

Query: 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTA 208
           K N  S +A  Y +   +L +A           GR+ + + + ++M +  C P+V+AY A
Sbjct: 464 KENCGSSSARVYAVMIKHLGKA-----------GRLDDAVNLFDEMNKLGCTPNVYAYNA 512

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           ++  LA    LD  L     M++     D+ +Y  ++ GL K G   R  E+   MK++ 
Sbjct: 513 LMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSA 572

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           I  D   Y  ++  +   G   +A  L+K++   G+  DL  Y+SI+  + +V  
Sbjct: 573 IKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGKVDH 627


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 121/494 (24%), Positives = 221/494 (44%), Gaps = 57/494 (11%)

Query: 116  RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVP 175
            ++T  +V +VL+   N   A  FF WA  Q+GY H+  + N L   L R  L R  D   
Sbjct: 808  KLTTTVVGKVLQGVRNGDAALGFFDWATSQEGYNHDTYTCNCLLQALLR--LKRPKDA-- 863

Query: 176  ELMDSQGRIAEMLEILEKMRRNLC-KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
                           L+  R  LC  P++F +T +I  L    ++     + +EM +  V
Sbjct: 864  ---------------LQVYRNKLCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGV 908

Query: 235  EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL-IDRAIYGVLIEGLVGEGKVGKAC 293
              +V+ +  +I GLC   ++    ELF+EM+E+G    D   Y  +++ LV  GKV  AC
Sbjct: 909  PQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDAC 968

Query: 294  DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
             L++D+V  G   ++  Y+S++ GLC+  + D+A  L +   +   +P+  T N ++   
Sbjct: 969  RLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGH 1028

Query: 354  AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
             ++GR+D  + LL +M                                  + G    +V 
Sbjct: 1029 CKLGRIDEAYHLLEEM----------------------------------VDGGCQPNVV 1054

Query: 414  IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
             Y +L+ A  + G+ + A+ L   M       N  +++  +    +  ++  AC+  + +
Sbjct: 1055 TYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSM 1114

Query: 474  IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            I+   VP+V +YN +  GLCK  ++   ++L+   L N    P    +   I  +C++  
Sbjct: 1115 IQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCV-PDIVTFNTIIDAMCKTYR 1173

Query: 534  AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
             +   E+ N + + GC PN V  ++++ G+CK    ++A  +   +  RK     + I Y
Sbjct: 1174 VDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREM-TRKQGCSPDIITY 1232

Query: 594  DEILIEHMKKKTAD 607
            + ++    K K  D
Sbjct: 1233 NTVIDGLCKSKRVD 1246



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 124/490 (25%), Positives = 223/490 (45%), Gaps = 30/490 (6%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G+  N  SYN + +   + N                R+   L +LE+M    C PDV +Y
Sbjct: 260 GFAPNVFSYNTVLHGFCKAN----------------RVENALWLLEQMVTRGCPPDVVSY 303

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           T +I  L     +D   RV ++M +   + +V+ Y TL+ G C+ G +    EL R+M E
Sbjct: 304 TTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTE 363

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G   +   Y  ++        + +A  +L+ ++ +G   D   Y++II G C+  +  +
Sbjct: 364 RGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLRE 423

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A+ L E  ++    PD + ++ L+    +   +D+  +LL     +    A D+  +   
Sbjct: 424 AHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRM--SIGMDCAPDVVAYSIL 481

Query: 387 L--VGKEERIMMA---LDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
           +  + K +R+  A   LDV   +K + Y  V  YN ++  L +   +  A  LF +MR  
Sbjct: 482 IHALCKAKRLPEAESWLDVM--VKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAA 539

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            +  + +++SI I    +  ++  A +   ++ E   VP V  Y+ L  GLCK G +D A
Sbjct: 540 GVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKA 599

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
             + ++ LG     P    Y   I  +C+  + E+  E+L  M ++ C P+ +  + +I+
Sbjct: 600 FDVFQEMLG-CGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLIN 658

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGL--E 619
           G+C    LEEA +V   ++++  L +  T  Y  +L    K    +LV   LK      E
Sbjct: 659 GLCNASRLEEAWRVLREMKDKGCLPDRMT--YGTLLRALQKTNNLELVEQLLKEMEATEE 716

Query: 620 SKLKAKGCKL 629
            +  A G +L
Sbjct: 717 GQWNANGARL 726



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 125/520 (24%), Positives = 220/520 (42%), Gaps = 59/520 (11%)

Query: 116 RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSR-------NNLF 168
           +++P++V +VL+   +P  A  FF WA  + GY+H     N L   L +       ++LF
Sbjct: 90  QLSPEIVGKVLQRLIDPGAALVFFEWAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLF 149

Query: 169 RA-------ADQV--PELMDS---QGRIAEMLEILEKMRRN------------------- 197
           R+        D V    L+      G+I    E+ ++M R                    
Sbjct: 150 RSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDA 209

Query: 198 ---------------LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
                           C PD   Y  MI  L+    LD  +R+ EEM  +    +V +Y 
Sbjct: 210 GQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYN 269

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           T++ G CK  RV     L  +M   G   D   Y  +I GL    +V +AC ++  ++  
Sbjct: 270 TVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQR 329

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + ++  Y +++ G CRV   D A +L     +    P+  T N ++        M+  
Sbjct: 330 GCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERA 389

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILM 419
            ++L  M  ++     D   +   + G  K  ++  A D+ E++  +G    V   + L+
Sbjct: 390 HQVLQMM--IQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLI 447

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            AL +   +  A  L     G++   + +++SI I    ++  + EA    + +++    
Sbjct: 448 DALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCY 507

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P V  YN +  GLCK   I+ A +L  D +      P    Y++ I   C+    +   +
Sbjct: 508 PDVVTYNSVVDGLCKSRRINDAFLLF-DRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFK 566

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           +L  M +  C P+ V  SA+I+G+CK GT+++A  VF  +
Sbjct: 567 MLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEM 606



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 116/494 (23%), Positives = 202/494 (40%), Gaps = 77/494 (15%)

Query: 145  QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            +KGY  N  +YN+L       ++F   D+V              ++L  M +  C P+V 
Sbjct: 1081 EKGYVPNLFTYNSLL------DMFCKKDEVER----------ACQLLSSMIQKGCVPNVV 1124

Query: 205  AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            +Y  +I  L     +   + + E+M  +    D++ + T+I  +CK  RV   +ELF  +
Sbjct: 1125 SYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLI 1184

Query: 265  KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV-DSGYRADLGIYNSIIGGLCRVKQ 323
            +E+G   +   Y  L+ GL    +  +A  LL+++    G   D+  YN++I GLC+ K+
Sbjct: 1185 QESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKR 1244

Query: 324  FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
             D+AYKLF   + D LAPD  T                +  +++ + K +F   A+    
Sbjct: 1245 VDRAYKLFLQMLSDGLAPDDVT----------------YSIVISSLCKWRFMDEAN---- 1284

Query: 384  FEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLN 442
                           +V E +   G+    I Y  L+    + G + KAL +   +    
Sbjct: 1285 ---------------NVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKG 1329

Query: 443  LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
               + ++FSI I    + G + +A E    ++    VP    YN L KG C     + A+
Sbjct: 1330 SYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAV 1389

Query: 503  MLVRDCLGNVASGPTEFKYALTILH-VCRSGEAEKIIEVLNEMTQEGCPPNEVICS---- 557
             L  + +      P    Y   + H V +    + + EV   M   G   N  + S    
Sbjct: 1390 DLF-EVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEA 1448

Query: 558  ------------AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKT 605
                        AI+    K G+ ++ARKVF  + +R      N +++  +L  ++  K 
Sbjct: 1449 SIEVEADVRLGCAIVDMFGKCGSPQDARKVFEGMDQR------NVVLWSAMLGVYVFHKQ 1502

Query: 606  ADLVLSGLKFFGLE 619
             +      +  GLE
Sbjct: 1503 EEQAFGLWRVMGLE 1516



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 99/445 (22%), Positives = 192/445 (43%), Gaps = 65/445 (14%)

Query: 144  KQKGYKHNFASYNALAYCLSRNNLFRAADQV-PELMDSQG-------------------R 183
            ++ G   N  +YN+L + L ++  F  A+ +  E+   QG                   R
Sbjct: 1185 QESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKR 1244

Query: 184  IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
            +    ++  +M  +   PD   Y+ +I  L   R +D    V E M K+  +   + Y T
Sbjct: 1245 VDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGT 1304

Query: 244  LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
            LI G CK G + +  E+ + +   G   D   + + I+ L   G++ +A +LL+ ++ +G
Sbjct: 1305 LIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAG 1364

Query: 304  YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
               D   YN+++ G C     + A  LFEV  Q    PD +T   L+     +    ++ 
Sbjct: 1365 LVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLV---GHLVDKKSYK 1421

Query: 364  KLLAQME--------KLKFSVAADLEKFFEF------------LVGKEERIMMALDVFEE 403
             LLA++         KL   +++ LE   E             + GK      A  VFE 
Sbjct: 1422 DLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVDMFGKCGSPQDARKVFE- 1480

Query: 404  LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF--SIAIQCHVESG 461
              G    +V +++ ++G  +   + ++A  L+  M    +E ++++F   + + CH    
Sbjct: 1481 --GMDQRNVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMCCH---A 1535

Query: 462  DILEACECHNKIIEMSQ----VPSVAAYNCLTKGLCKIGEIDAA--MMLVRDCLGNVASG 515
             +L+A    ++ + +S+     P V  ++C+   L ++G ++ A  +ML   C  + A+ 
Sbjct: 1536 GLLDAAV--DEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAEDLMLGMPCKPSAAT- 1592

Query: 516  PTEFKYALTILHVCRSGEAEKIIEV 540
               +   L+   +C  G+ E+ + V
Sbjct: 1593 ---WNCLLSAYKIC--GDFERALRV 1612


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 177/729 (24%), Positives = 276/729 (37%), Gaps = 148/729 (20%)

Query: 12  PYFFYGHRKP----SQNRPTVYGGLFSNRQSLRNPNSASE---PHQSPPFNVQKWDPHYL 64
           P+  Y H  P    S + P    GL    QSL +  S  +   P +         D H  
Sbjct: 31  PFPIYSHSSPFAHFSTSSPDDLPGLVDPDQSLSSDTSRVQCFSPQEVSLLRDSLLDSH-- 88

Query: 65  PNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLR-RVTPDLVA 123
                    S  +T Q  + +S  A  I DA R     +G +    L + R ++ PDLV 
Sbjct: 89  -----ADSCSSHRTLQTVK-ISNEAFLILDAIRNCDDGFGEKTHIVLRQFRQKLNPDLVV 142

Query: 124 EVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE--LMDSQ 181
           E+L    +P L  KFF WAG+Q GY H  A Y AL     R     + D+VPE  L + +
Sbjct: 143 EILSFLKSPELCVKFFLWAGRQIGYDHTPAVYIALLDVFERG----SYDRVPEEFLREIR 198

Query: 182 GRIAEML-EILEKMRRNLC--------------------KPDVFAYTAMIRVLAAERNLD 220
           G   E+L ++L  + R  C                    KP    Y A+++V      LD
Sbjct: 199 GDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLD 258

Query: 221 ACLRVWEEM---------------------------------KKDLVEADVMAYVTLIMG 247
               V  EM                                 K+D V   ++ Y  +I G
Sbjct: 259 TAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTIL-YNKMISG 317

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC+        +    M+    + +   Y +L+ G + + ++G+   +L  ++  G    
Sbjct: 318 LCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPS 377

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN--FFKL 365
             I+NS++   C+   F  AYKL +   + +  P +   N L+      G +     F+L
Sbjct: 378 YTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFEL 437

Query: 366 LAQMEKLKFSVAADLEK-----FFEFL--VGKEERIMMALDVFEELKGKGY-SSVPIYNI 417
             +      S    L K     F   L   GK E+   A  V  E+ G G+      Y+ 
Sbjct: 438 AEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEK---AYKVIHEMMGNGFVPDTSTYSE 494

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++G L     V+ A +LF +M+G  +  +  +++I I C  ++G I +A   HN + EM 
Sbjct: 495 VIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQA---HNWLDEMV 551

Query: 478 Q--------------------------------------VPSVAAYNCLTKGLCKIGEID 499
           +                                       P+V  Y  L  G CK G I+
Sbjct: 552 RDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIE 611

Query: 500 AAMMLVRDCLG---------------NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
            A  +     G               NVA  P    Y   +  +C++ + +   ++L  M
Sbjct: 612 KACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETM 671

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
             +GC PN ++  A+I G CK   L+EA++VF  + ER      N   Y  ++    K K
Sbjct: 672 FVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGY--NPNVYTYSSLIDRLFKDK 729

Query: 605 TADLVLSGL 613
             DLVL  L
Sbjct: 730 RLDLVLKVL 738



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/464 (21%), Positives = 200/464 (43%), Gaps = 38/464 (8%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           IL  M    C P    + +++       +     ++ ++M+K   +   + Y  LI  +C
Sbjct: 365 ILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSIC 424

Query: 250 KGGRV------VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
            GG +          + + EM   G ++++         L G GK  KA  ++ +++ +G
Sbjct: 425 SGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNG 484

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
           +  D   Y+ +IG LC   + + A+ LF+      + PD  T   L+ C ++ G +    
Sbjct: 485 FVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAH 544

Query: 364 KLLAQM--EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMG 420
             L +M  +  + +V         +L  K +++ +A ++FE +  KG + +V  Y  L+ 
Sbjct: 545 NWLDEMVRDGCEPTVVTYTTLIHAYL--KAKKVSVANELFELMIAKGCFPNVITYTALID 602

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES-------GDILEA-CECHN- 471
              + G ++KA  ++ +MRG + ++  +     I+ +V         G +++  C+ H  
Sbjct: 603 GYCKSGNIEKACQIYARMRG-DADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKV 661

Query: 472 ----KIIEMSQV----PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
                ++E   V    P+   Y+ L  G CK  ++D A  +    +      P  + Y+ 
Sbjct: 662 KDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVER-GYNPNVYTYSS 720

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I  + +    + +++VL++M +  C PN VI + +I G+ K    +EA K+   + E+ 
Sbjct: 721 LIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKG 780

Query: 584 LLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
              + N + Y  ++    K    D  L   +  G      +KGC
Sbjct: 781 --CKPNVVTYTAMIDGFGKAGKVDKCLELFREMG------SKGC 816



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 172/397 (43%), Gaps = 28/397 (7%)

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
            +  R L      +   +V  EM  +    D   Y  +I  LC   RV     LF+EMK 
Sbjct: 458 VSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKG 517

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G++ D   Y +LI+     G + +A + L ++V  G    +  Y ++I    + K+   
Sbjct: 518 TGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSV 577

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME------------KLKF 374
           A +LFE+ +     P+  T   L+    + G ++   ++ A+M             K+K 
Sbjct: 578 ANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKN 637

Query: 375 SVAA--DLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVK 429
           +VA   ++  +   + G  K  ++  A D+ E +   G   +  +Y+ L+    +  ++ 
Sbjct: 638 NVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLD 697

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
           +A  +F KM       N  ++S  I    +   +    +  +K++E S  P++  Y  + 
Sbjct: 698 EAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMI 757

Query: 490 KGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
            GL K+ + D A     MM  + C  NV +      Y   I    ++G+ +K +E+  EM
Sbjct: 758 DGLSKVAKTDEAYKLMLMMEEKGCKPNVVT------YTAMIDGFGKAGKVDKCLELFREM 811

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
             +GC PN V  + +I+  C  G L+EA  +   +++
Sbjct: 812 GSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQ 848



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/418 (20%), Positives = 180/418 (43%), Gaps = 38/418 (9%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV---------- 238
           E+ E M    C P+V  YTA+I       N++   +++  M+ D    DV          
Sbjct: 580 ELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNV 639

Query: 239 ------MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
                 + Y  L+ GLCK  +V    +L   M  +G   +  +Y  LI+G     K+ +A
Sbjct: 640 AEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEA 699

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
            ++   +V+ GY  ++  Y+S+I  L + K+ D   K+    +++  AP+      ++  
Sbjct: 700 QEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDG 759

Query: 353 CAEMGRMDNFFKLLAQMEKLK-----FSVAADLEKFFEFLVGKEERIMMALDVFEELKGK 407
            +++ + D  +KL+  ME+        +  A ++ F     GK  ++   L++F E+  K
Sbjct: 760 LSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGF-----GKAGKVDKCLELFREMGSK 814

Query: 408 GYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH----VESGD 462
           G + +   Y +L+      G + +A  L  +M+      +  S+   I+ +    + S  
Sbjct: 815 GCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLG 874

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKY 521
           +LE  E      +    P++  Y  L     K G ++ A+ L ++ +  +++    +  Y
Sbjct: 875 LLEEVE------KNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLY 928

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
              I     + + +   E+  +M ++G  P+      ++ G+ +    EEA ++  +L
Sbjct: 929 TSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSL 986



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 150/325 (46%), Gaps = 5/325 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ +  ++LE M  + C+P+   Y A+I        LD    V+ +M +     +V  Y 
Sbjct: 660 KVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYS 719

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +LI  L K  R+    ++  +M EN    +  IY  +I+GL    K  +A  L+  + + 
Sbjct: 720 SLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEK 779

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + ++  Y ++I G  +  + DK  +LF        AP+F T   L+  C   G +D  
Sbjct: 780 GCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEA 839

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
           + LL +M++  +     +  + + + G +   +++L + EE++  G + ++ +Y +L+  
Sbjct: 840 YALLEEMKQTYW--PKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPTILLYKVLIDN 897

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLS--FSIAIQCHVESGDILEACECHNKIIEMSQV 479
            ++ G ++ AL L  ++   ++ + +    ++  I     +  I  A E    +I    +
Sbjct: 898 FVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVI 957

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMML 504
           P +  +  L  GL ++   + A+ L
Sbjct: 958 PDLGTFVHLLMGLIRVRRWEEALQL 982



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 7/194 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ + LE+  +M    C P+   YT +I    A  +LD    + EEMK+      V +Y
Sbjct: 799 GKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSY 858

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I G  +   +  G  L  E+++NG      +Y VLI+  V  G++  A +L K+++ 
Sbjct: 859 CKVIEGYKREFILSLG--LLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVIS 916

Query: 302 SGYR--ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +     A   +Y S+I       + D A++LF   ++D + PD  T   LL+    + R 
Sbjct: 917 ASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRW 976

Query: 360 DNFFKL---LAQME 370
           +   +L   L QM+
Sbjct: 977 EEALQLSDSLCQMD 990



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 4/162 (2%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           + G + E   +LE+M++      V +Y  +I     +R     L + EE++K+     ++
Sbjct: 832 ATGHLDEAYALLEEMKQTYWPKHVSSYCKVIE--GYKREFILSLGLLEEVEKNGSAPTIL 889

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILID--RAIYGVLIEGLVGEGKVGKACDLLK 297
            Y  LI    K GR+    EL +E+    + +   + +Y  LI       K+  A +L  
Sbjct: 890 LYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFY 949

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339
           D++  G   DLG +  ++ GL RV+++++A +L +   Q D+
Sbjct: 950 DMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSLCQMDI 991


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 203/404 (50%), Gaps = 6/404 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ + LE+ +KM R+  + D+  Y  +I  L   R     + +   M  ++   +   
Sbjct: 22  EGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELHRRMLSEICSGNFFT 81

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I  LCK G  ++G ++FREM   GI  +  +Y  LI GL   GK+ +A +L  ++V
Sbjct: 82  YGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMV 141

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G +A++  YNS+I   CR   + +A + F   V + + PD  T   L+   ++ G++ 
Sbjct: 142 SQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQ 201

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
             +K+   M  +K   A ++  +   L G     ++  A+ +FE +  +G    V  YN 
Sbjct: 202 EAYKIFELM--IKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNT 259

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+      G+ ++A+ LF KM+   L  +  +++I ++   ++G I  A E  N +    
Sbjct: 260 LINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICG 319

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
           Q PS+  Y  L  GLCK G I+ A+ + R  L ++   P+   Y++ I  + ++   E  
Sbjct: 320 QSPSLDTYTVLLDGLCKNGCIEEAIDVFRS-LKSIKYKPSIRIYSILIGGMFQARRWESA 378

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           +E+ +E+   G  PN V  + +I+G+CK G L EA ++F  + E
Sbjct: 379 MEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEE 422



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 155/351 (44%), Gaps = 37/351 (10%)

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           E +   +C P+V  Y+++I  L     L   + +++EM    ++A+V+ Y +LI   C+ 
Sbjct: 104 EMINMGIC-PNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRF 162

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           G        F +M   GIL D   +  LI+ L  +GKV +A  + + ++  G   ++  Y
Sbjct: 163 GLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTY 222

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQ----------------------------------- 336
           NS++ GLC   Q D A +LFEV V+                                   
Sbjct: 223 NSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQY 282

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
           ++L P  +T   LL    + GR+    +L   M+    S + D        + K   I  
Sbjct: 283 EELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEE 342

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A+DVF  LK   Y  S+ IY+IL+G + +    + A+ +F ++  + L  N ++++I I 
Sbjct: 343 AIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMIN 402

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
              + G +LEA     ++ E        ++N + +G  +  ++  AM  ++
Sbjct: 403 GLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLK 453



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 146/322 (45%), Gaps = 60/322 (18%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQ----------VPEL---------MDSQGRIAE 186
           +G K N  +YN+L +   R  L++ A +          +P++         +  +G++ E
Sbjct: 143 QGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQE 202

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
             +I E M +    P++  Y +++  L     +D  +R++E M +  ++ DV++Y TLI 
Sbjct: 203 AYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLIN 262

Query: 247 GLCKGGRVVRGHELFREMK-------------------ENG-------ILIDRAI----- 275
           G C  G+      LFR+M+                   +NG       +  +  I     
Sbjct: 263 GYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSP 322

Query: 276 ----YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
               Y VL++GL   G + +A D+ + L    Y+  + IY+ +IGG+ + ++++ A ++F
Sbjct: 323 SLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIF 382

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG-- 389
           +      L P+  T N ++    + G++    +L  QME+   S     E  F F++   
Sbjct: 383 DEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEE---SGCEQDEISFNFIIRGF 439

Query: 390 -KEERIMMALDVFEELKGKGYS 410
            +E ++  A++  + ++ K +S
Sbjct: 440 LQENQVQKAMEFLKRMREKNFS 461



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 77/385 (20%), Positives = 155/385 (40%), Gaps = 73/385 (18%)

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           + +++   TL+ G+C  G+V+   ELF +M  +G   D  +YG LI  L    +  +A +
Sbjct: 6   QPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVE 65

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           L + ++      +   Y  +I  LC+     K  K+F   +   + P+    + L+    
Sbjct: 66  LHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLC 125

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVP 413
            +G++                                     A+++F+E+  +G  ++V 
Sbjct: 126 RVGKLRE-----------------------------------AVNLFDEMVSQGIKANVI 150

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN L+ A    G  K+A   F +M G  +  + ++F+  I    + G + EA +    +
Sbjct: 151 TYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELM 210

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           I+  + P++  YN L  GLC   ++D A+                               
Sbjct: 211 IKQGEAPNIVTYNSLLNGLCLHHQMDHAV------------------------------- 239

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT-IV 592
             ++ EV   M + G   + +  + +I+G C  G  EEA  +F  ++  +L     T  +
Sbjct: 240 --RLFEV---MVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTI 294

Query: 593 YDEILIEHMKKKTADLVLSGLKFFG 617
             + L ++ + +TA  + + ++  G
Sbjct: 295 LLKALYQNGRIRTAKELFNNMQICG 319



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 105/253 (41%), Gaps = 25/253 (9%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNN-----LFRAADQVPELMDS-------------QGRI 184
           ++G K +  SYN L   YC S        LFR   Q  EL  S              GRI
Sbjct: 247 ERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKM-QYEELTPSITTYTILLKALYQNGRI 305

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
               E+   M+     P +  YT ++  L     ++  + V+  +K    +  +  Y  L
Sbjct: 306 RTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSIL 365

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G+ +  R     E+F E+   G++ +   Y ++I GL  EGK+ +A  L   + +SG 
Sbjct: 366 IGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGC 425

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM----D 360
             D   +N II G  +  Q  KA +  +   + + +P+ S    L+   A   +     +
Sbjct: 426 EQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLYAADAQSSELPN 485

Query: 361 NFFKLLAQMEKLK 373
           NF   L Q + LK
Sbjct: 486 NFLHELVQKKTLK 498


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 137/579 (23%), Positives = 248/579 (42%), Gaps = 31/579 (5%)

Query: 45  ASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRK--NQFQ 102
           AS PH +    +++ +   +   +T SP ++     L    +   R + + F +    F+
Sbjct: 15  ASSPHLAR--RLKQTENEIVQMFRTPSPRNEDAVAALSPRYTNSVRVLDERFIRILKIFK 72

Query: 103 WGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           WGP     L  L  RV   LV EV+K +    +  +FF WA K++ Y+H+ ++Y AL +C
Sbjct: 73  WGPDAERALEVLMLRVDHWLVREVMKTDVGVNVKMQFFRWAAKKRNYQHDTSTYMALIHC 132

Query: 162 LSR-----------NNLFRAA---------DQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           L               + R+           QV  ++ +   I + + I  +++   C+P
Sbjct: 133 LELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQP 192

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKD-LVEADVMAYVTLIMGLCKGGRVVRGHEL 260
              AY +MI +L  E   +    ++ EM  +   + D + Y  LI   CK GR      L
Sbjct: 193 TAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRL 252

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             EMKENG+     IY ++I        V  A  L +++     R D+  Y  +I GL +
Sbjct: 253 LNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGK 312

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK-FSVAAD 379
             + D+AY  +    ++   PD   +N ++    + GR+D+  KL  +M           
Sbjct: 313 AGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVT 372

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKM 438
                + L   + R+      FE +KG G S  P  Y+IL+    +   ++KA+ L  +M
Sbjct: 373 YNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEM 432

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
                     ++   I    ++     ACE   ++ E     S   Y  + K L K G +
Sbjct: 433 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRL 492

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D A+ L  D +  +   P  + Y   +  + R+   ++ +  + +M + GC P+    + 
Sbjct: 493 DDAINLF-DEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNI 551

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           I++G+ K G    A ++ TN++   +  +A  + Y+ +L
Sbjct: 552 ILNGLAKTGGPHRAMEMLTNMKNSTIKPDA--VSYNTVL 588



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 159/380 (41%), Gaps = 38/380 (10%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L + E+MR   C+PDVF YT +IR L     +D     + EM+++  + D +    +I  
Sbjct: 285 LSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINF 344

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV-GEGKVGKACDLLKDLVDSGYRA 306
           L K GR+  G +LF EM  +  + +   Y  +I+ L   + +V +     + +  SG   
Sbjct: 345 LGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISP 404

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
               Y+ +I G C+  + +KA  L E   +    P  +    L+    +  R D   +L 
Sbjct: 405 SPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELF 464

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
            ++++   S +A +       +GK  R+  A+++F+E+   G + +V  YN LM  L   
Sbjct: 465 QELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARA 524

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
             + +AL    KM+                                   E   +P + +Y
Sbjct: 525 CMLDEALTTMRKMQ-----------------------------------EHGCLPDINSY 549

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           N +  GL K G    AM ++ + + N    P    Y   +  +  +G  E+  E++ EM 
Sbjct: 550 NIILNGLAKTGGPHRAMEMLTN-MKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMN 608

Query: 546 QEGCPPNEVICSAIISGMCK 565
             G   + +  S+I+  + K
Sbjct: 609 ALGFEYDLITYSSILEAIGK 628



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 11/175 (6%)

Query: 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTA 208
           K N  S +A  Y +   +L +A           GR+ + + + ++M +  C P+V+AY A
Sbjct: 468 KENCGSSSARVYAVMIKHLGKA-----------GRLDDAINLFDEMSKLGCTPNVYAYNA 516

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           ++  LA    LD  L    +M++     D+ +Y  ++ GL K G   R  E+   MK + 
Sbjct: 517 LMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNST 576

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           I  D   Y  ++  L   G   +A +L+K++   G+  DL  Y+SI+  + +V Q
Sbjct: 577 IKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKVDQ 631



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 85/192 (44%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           RI + + +LE+M      P   AY ++I  L   +  D    +++E+K++   +    Y 
Sbjct: 421 RIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYA 480

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            +I  L K GR+     LF EM + G   +   Y  L+ GL     + +A   ++ + + 
Sbjct: 481 VMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEH 540

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D+  YN I+ GL +     +A ++        + PD  + N +L   +  G  +  
Sbjct: 541 GCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEA 600

Query: 363 FKLLAQMEKLKF 374
            +L+ +M  L F
Sbjct: 601 AELMKEMNALGF 612


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 132/533 (24%), Positives = 241/533 (45%), Gaps = 71/533 (13%)

Query: 126 LKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRN-NLFRAADQVPELMDS---- 180
           ++  + P LA +FF WAG+Q GYKH+  SYN L   L ++ + FR      +L+ S    
Sbjct: 1   MRRSSRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSP 60

Query: 181 --------------QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVW 226
                          G+    LE L  +      PDV+ +  +I  L  + N D  ++++
Sbjct: 61  NLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLF 120

Query: 227 EEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL-------------------------- 260
           E M+   V+ +++ Y T+I GLCK G + +  EL                          
Sbjct: 121 ENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFY 180

Query: 261 ----------FRE-MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
                     FRE MK  GI  D     +L+ G+  +G V +A ++L  +  +G   D+ 
Sbjct: 181 RASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVI 240

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            YNSII  LC   +  +A ++ +       +PD  T N LL    + G +    ++L +M
Sbjct: 241 TYNSIIHALCVAGKVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEM 297

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIG 426
              + ++  D+  +   + G  +  ++ +A  + EE+  +GY   V  Y  L+  L + G
Sbjct: 298 --CRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSG 355

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
           E+++A  L  +M         + +S  +  +  +G++ +A E   +++ ++ VP +  YN
Sbjct: 356 EIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYN 415

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEM 544
            +  GL K G I  A+ L+ D    VA G  P    Y   I  +C++    +  ++ +EM
Sbjct: 416 IVLGGLIKDGSISKAVSLISDL---VARGYVPDVVTYNTLIDGLCKANRVREACDLADEM 472

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
              GC PN+V   +++ G+C+ G +++A  +   +  ++     N +VY  ++
Sbjct: 473 ASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKR--HAPNVVVYTSLI 523



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 105/486 (21%), Positives = 201/486 (41%), Gaps = 31/486 (6%)

Query: 129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRN-NLFRAADQVPELMDSQG----- 182
           + NP  A K F      +  K    +YN +   L ++ NL +A + + E++   G     
Sbjct: 110 DGNPDQAVKLFENMESSR-VKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPD 168

Query: 183 ---------------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWE 227
                          RI E     EKM+     PDV     ++  +  + +++  L + +
Sbjct: 169 IVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILD 228

Query: 228 EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
            MK      DV+ Y ++I  LC  G+VV   E+ + M  +    D   +  L++G    G
Sbjct: 229 GMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMSCSP---DLVTFNTLLDGFCKAG 285

Query: 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
            + +A ++L+++       D+  Y  ++ GLCRV Q   A+ L E  V+    PD     
Sbjct: 286 MLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYT 345

Query: 348 PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK 407
            L+    + G ++   KL+ +M          +         +   +  A ++  E+   
Sbjct: 346 SLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVS- 404

Query: 408 GYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
             + VP    YNI++G L++ G + KA+ L   +       + ++++  I    ++  + 
Sbjct: 405 -INMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVR 463

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
           EAC+  +++      P+      +  GLC++G +D A  LV + +      P    Y   
Sbjct: 464 EACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVE-MSRKRHAPNVVVYTSL 522

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           I  +C+S   +    VL+ M  +G   ++     +I  M   G + EA  ++  +  R  
Sbjct: 523 IDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGF 582

Query: 585 LTEANT 590
           L + +T
Sbjct: 583 LPDGST 588



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 2/170 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA-AERNLDACLRVWEEMKKDLVEADVM 239
            G I++ + ++  +      PDV  Y  +I  L  A R  +AC    E   +     DV 
Sbjct: 424 DGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDV- 482

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
              +++ GLC+ GRV     L  EM       +  +Y  LI+GL    ++  AC +L  +
Sbjct: 483 TLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAM 542

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
              G   D   Y  +I  +    +  +A  +++  V     PD ST   L
Sbjct: 543 RGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 592


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 239/503 (47%), Gaps = 30/503 (5%)

Query: 146 KGYKH-NFASYNALAYCLSRNN-------LF---RAADQVPE------LMDSQGRIAEM- 187
           KG+   N  +YN+L   L++         LF   +AA   P+      L++S GR  +  
Sbjct: 2   KGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWE 61

Query: 188 --LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
             LE++ +M+   CKP+++ Y  ++  L      D  LR+  EM+ +    DV  Y  LI
Sbjct: 62  AALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLI 121

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
             L K GR+     LF EM+E G + D   Y  LI GL   G+  KA +LL+++   G  
Sbjct: 122 STLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCP 181

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  Y+S+I GL +  +  KA+KLF+   +    PD  T   L+    + GR+D+  +L
Sbjct: 182 PDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALEL 241

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
           L +M++                 GK   ++ A ++ +E+K  G    V  Y+ L+  L++
Sbjct: 242 LDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIK 301

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
             ++ +A  +  KM       ++++++  I    ++G + +A    +++      P V  
Sbjct: 302 ASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVT 361

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y+ L   L K   +++A +L  + + +V   P  F Y   I  + ++G+ +    + +EM
Sbjct: 362 YSTLITALGKAARVESACVLFEE-MESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEM 420

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
             +G  P+ +  +A ++ + + G  +EARK+F +++E  LL +  T  YD +L+   K K
Sbjct: 421 RGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVAT--YDALLLGLSKTK 478

Query: 605 TADLVLSGLKFFGLESKLKAKGC 627
             D         GL  +L  +GC
Sbjct: 479 EVD------DACGLLKELIEQGC 495



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 138/541 (25%), Positives = 233/541 (43%), Gaps = 70/541 (12%)

Query: 106 QVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAG--------KQKGYKHNFASYNA 157
           Q++ E  K  + TPD+V+    + N+   A K   W          + KG K N  +YN 
Sbjct: 29  QLLFEELKAAKWTPDVVSYSCLI-NSLGRAGK---WEAALEVVAEMQAKGCKPNLWTYNT 84

Query: 158 LAYCLSRNNLFRAADQ----------VPEL---------MDSQGRIAEMLEILEKMRRNL 198
           L  CL +   F  A +          VP++         +   GR++E   +  +MR   
Sbjct: 85  LVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERG 144

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C PD F Y ++I  L         + + EEM++     DVM Y +LI GL K G  V+  
Sbjct: 145 CVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAF 204

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           +LF+EMK  G   D   +  L++ L   G+V  A +LL ++ + G +  +  YN++I G 
Sbjct: 205 KLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGF 264

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL------ 372
            +V    +AY L +   ++   PD  T + L+    +  ++D   ++L +MEK       
Sbjct: 265 GKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDT 324

Query: 373 -----------KFSVAADLEKFFEFL------------------VGKEERIMMALDVFEE 403
                      K  +  D  + F+ +                  +GK  R+  A  +FEE
Sbjct: 325 ITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEE 384

Query: 404 LKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
           ++  G    +  Y  ++  L + G+V  A  LF +MRG  L  + ++++  +      G 
Sbjct: 385 MESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGR 444

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKY 521
             EA +    + E   +P VA Y+ L  GL K  E+D A  L+++ +    A    +F  
Sbjct: 445 FKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDE 504

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            L IL     G  ++  E+L     +G  P     +A+I  + K G + EA     +L+E
Sbjct: 505 CLEILT--SWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKE 562

Query: 582 R 582
           +
Sbjct: 563 Q 563



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 156/391 (39%), Gaps = 56/391 (14%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K++G K    +YNAL     +                 G + E   +L++M+RN CKPDV
Sbjct: 246 KERGVKPGVVTYNALIAGFGK----------------VGDLVEAYNLLDEMKRNGCKPDV 289

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y+ +I  L     LD   +V ++M+K+    D + Y TLI GL K G +     LF  
Sbjct: 290 VTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDR 349

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           MK  G   D   Y  LI  L    +V  AC L +++   G + DL  Y SII  L +  Q
Sbjct: 350 MKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQ 409

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            D A +LF       L+PD  T N  L      GR     K+   M++    +  D+  +
Sbjct: 410 VDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKE--SGLLPDVATY 467

Query: 384 FEFLVG--KEERIMMALDVFEELKGKG--------------------------------- 408
              L+G  K + +  A  + +EL  +G                                 
Sbjct: 468 DALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANS 527

Query: 409 ---YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
              +     YN L+ AL + G V +A      ++    + + +S+S  I    ++G I  
Sbjct: 528 KGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDT 587

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           A E   ++ +     S  +Y+ L + L   G
Sbjct: 588 AFELLEEMSKRGLKLSPRSYSNLVRKLQDWG 618


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 152/625 (24%), Positives = 268/625 (42%), Gaps = 86/625 (13%)

Query: 45  ASEPHQSPPFN------VQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRK 98
           +S PH S  F       VQ +    +PN +    P +   ++L R   P  R + + F +
Sbjct: 16  SSLPHLSQRFKQTENEIVQMFS---VPNHEESEKPQEK--WKLSRK-DPSVRMLDERFIR 69

Query: 99  --NQFQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASY 155
               F+WGP     L  L+ +V   LV  +L+++    +  +FF WAGK++ ++H+ ++Y
Sbjct: 70  IVKIFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHDCSTY 129

Query: 156 NALAYCLSRNNLF----RAADQV-------------PELMDSQGR---IAEMLEILEKMR 195
             L  CL    L+    R   +V              EL+ + GR   +++ L +  + +
Sbjct: 130 MTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAK 189

Query: 196 RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM-KKDLVEADVMAYVTLIMGLCKGGRV 254
              CKP    Y ++I +L  E   +    V+ EM  +     D + Y  LI    K GR 
Sbjct: 190 GRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRN 249

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
                LF EMK+N +     IY  L+      GKV KA DL +++  +G    +  Y  +
Sbjct: 250 DSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTEL 309

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM----- 369
           I GL +  + D+AY  ++  ++D L PD   +N L+    ++GR++    + ++M     
Sbjct: 310 IKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRC 369

Query: 370 ----------------------------EKLKFSVAADLEKFFEFLVG---KEERIMMAL 398
                                       +K+K    +  E  +  L+    K  R+  AL
Sbjct: 370 TPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKAL 429

Query: 399 DVFEELKGKGYSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
            + EE+  KG+   P  Y  L+ AL +    + A  LF +++     V+S  +++ I+  
Sbjct: 430 LLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENFGNVSSRVYAVMIKHF 489

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-----CLGNV 512
            + G + EA +  N++      P V AYN L  G+ K G I+ A  L+R      C  ++
Sbjct: 490 GKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADI 549

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
            S      + + +    R+G   + IE+   +   G  P+ V  + ++      G  EEA
Sbjct: 550 NS------HNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEA 603

Query: 573 RKVFTNLRERKLLTEANTIVYDEIL 597
            ++   ++++    E + I Y  IL
Sbjct: 604 ARMMREMKDKGF--EYDAITYSSIL 626


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 152/625 (24%), Positives = 268/625 (42%), Gaps = 86/625 (13%)

Query: 45  ASEPHQSPPFN------VQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRK 98
           +S PH S  F       VQ +    +PN +    P +   ++L R   P  R + + F +
Sbjct: 16  SSLPHLSQRFKQTENEIVQMFS---VPNHEESEKPQEK--WKLSRK-DPSVRMLDERFIR 69

Query: 99  --NQFQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASY 155
               F+WGP     L  L+ +V   LV  +L+++    +  +FF WAGK++ ++H+ ++Y
Sbjct: 70  IVKIFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHDCSTY 129

Query: 156 NALAYCLSRNNLF----RAADQV-------------PELMDSQGR---IAEMLEILEKMR 195
             L  CL    L+    R   +V              EL+ + GR   +++ L +  + +
Sbjct: 130 MTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAK 189

Query: 196 RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM-KKDLVEADVMAYVTLIMGLCKGGRV 254
              CKP    Y ++I +L  E   +    V+ EM  +     D + Y  LI    K GR 
Sbjct: 190 GRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRN 249

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
                LF EMK+N +     IY  L+      GKV KA DL +++  +G    +  Y  +
Sbjct: 250 DSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTEL 309

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM----- 369
           I GL +  + D+AY  ++  ++D L PD   +N L+    ++GR++    + ++M     
Sbjct: 310 IKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRC 369

Query: 370 ----------------------------EKLKFSVAADLEKFFEFLVG---KEERIMMAL 398
                                       +K+K    +  E  +  L+    K  R+  AL
Sbjct: 370 TPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKAL 429

Query: 399 DVFEELKGKGYSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
            + EE+  KG+   P  Y  L+ AL +    + A  LF +++     V+S  +++ I+  
Sbjct: 430 LLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHF 489

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-----CLGNV 512
            + G + EA +  N++      P V AYN L  G+ K G I+ A  L+R      C  ++
Sbjct: 490 GKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADI 549

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
            S      + + +    R+G   + IE+   +   G  P+ V  + ++      G  EEA
Sbjct: 550 NS------HNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEA 603

Query: 573 RKVFTNLRERKLLTEANTIVYDEIL 597
            ++   ++++    E + I Y  IL
Sbjct: 604 ARMMREMKDKGF--EYDAITYSSIL 626



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 71/140 (50%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+++E +++  +M+     PDV+AY A++  +     ++    +  +M+++   AD+ ++
Sbjct: 493 GKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSH 552

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++ G  + G   R  E+F  +K +GI  D   Y  L+      G   +A  +++++ D
Sbjct: 553 NIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKD 612

Query: 302 SGYRADLGIYNSIIGGLCRV 321
            G+  D   Y+SI+  +  V
Sbjct: 613 KGFEYDAITYSSILDAVGNV 632


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 148/611 (24%), Positives = 263/611 (43%), Gaps = 72/611 (11%)

Query: 64  LPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRK--NQFQWGPQVVTELSKLR-RVTPD 120
           +PN +    P +   ++L R   P  R + + F +    F+WGP     L  L+ +V   
Sbjct: 38  IPNHEESEKPQEK--WKLSRK-DPSVRMLDERFIRIVKIFKWGPDAEKALEVLKLKVDHR 94

Query: 121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNL----FRAADQV-- 174
           LV  +L+++    +  +FF WAGK++ ++H+ ++Y AL  CL    L    +R   +V  
Sbjct: 95  LVRSILEIDVEINVKIQFFKWAGKRRNFQHDCSTYMALIRCLEEARLYGEMYRTIQEVVR 154

Query: 175 -----------PELMDSQGR---IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLD 220
                       EL+ + GR   +++ L +  + +   CKP    Y ++I +L  E   +
Sbjct: 155 NTYVSVGPVVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHE 214

Query: 221 ACLRVWEEM-KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL 279
               V+ EM  +     D + Y  LI    K GR      LF EMK+N +     IY  L
Sbjct: 215 KVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTL 274

Query: 280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339
           +      GKV KA DL +++  +G    +  Y  +I GL +  + ++AY L++  + D L
Sbjct: 275 LGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGL 334

Query: 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQM------------------------------ 369
            PD   +N L+    ++GR++    +  +M                              
Sbjct: 335 TPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVS 394

Query: 370 ---EKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSSVP-IYNILMGAL 422
              +K+K    +  E  +  L+    K  R+  AL + EE+  KG+   P  Y  L+ AL
Sbjct: 395 SWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINAL 454

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            +    + A  LF +++     V+S  +++ I+   + G + EA +  N++      P V
Sbjct: 455 GKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDV 514

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
            AYN L  G+ K G ++ A  L+R    N  +      + + +    R+G   + IE+  
Sbjct: 515 YAYNALMSGMVKAGMVNEANSLLRKMEENGCTADIN-SHNIILNGFARTGVPRRAIEMFE 573

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL----- 597
            M   G  P+ V  + ++      G  EEA ++   ++++    E + I Y  IL     
Sbjct: 574 TMKHCGIKPDGVTYNTLLGCFAHAGMFEEAARLMREMKDKGF--EYDAITYSSILDAVGN 631

Query: 598 IEHMKKKTADL 608
           ++H K   + L
Sbjct: 632 MDHEKDDVSSL 642


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 176/729 (24%), Positives = 275/729 (37%), Gaps = 148/729 (20%)

Query: 12  PYFFYGHRKP----SQNRPTVYGGLFSNRQSLRNPNSASE---PHQSPPFNVQKWDPHYL 64
           P+  Y H  P    S + P    GL    QSL +  S  +   P +         D H  
Sbjct: 31  PFPIYSHSSPFAHFSTSSPDDLPGLVDPDQSLSSDTSRVQCFSPQEVSLLRDSLLDSH-- 88

Query: 65  PNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLR-RVTPDLVA 123
                    S  +T Q  + +S  A  I DA R     +G +    L + R ++ PDLV 
Sbjct: 89  -----ADSCSSHRTLQTVK-ISNEAFLILDAVRNCDDGFGEKTHIVLRQFRQKLNPDLVV 142

Query: 124 EVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE--LMDSQ 181
           E+L    +P L  KFF WAG+Q GY H  A Y AL     R     + D+VPE  L + +
Sbjct: 143 EILSFLKSPELCVKFFLWAGRQIGYDHTPAVYIALLDVFERG----SYDRVPEEFLREIR 198

Query: 182 GRIAEML-EILEKMRRNLC--------------------KPDVFAYTAMIRVLAAERNLD 220
           G   E+L ++L  + R  C                    KP    Y A+++V      LD
Sbjct: 199 GDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLD 258

Query: 221 ACLRVWEEM---------------------------------KKDLVEADVMAYVTLIMG 247
               V  EM                                 K+D V   ++ Y  +I G
Sbjct: 259 TAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTIL-YNKMISG 317

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC+        +    M+    + +   Y +L+ G + + ++G+   +L  ++  G    
Sbjct: 318 LCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPS 377

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN--FFKL 365
             I+NS++   C+   F  AYKL +   + +  P +   N L+      G +     F+L
Sbjct: 378 YTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFEL 437

Query: 366 LAQMEKLKFSVAADLEK-----FFEFL--VGKEERIMMALDVFEELKGKGY-SSVPIYNI 417
             +      S    L K     F   L   GK E+   A  V  E+ G G+      Y+ 
Sbjct: 438 AEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEK---AYKVIHEMMGNGFVPDTSTYSE 494

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++G L     V+ A +LF +M+G  +  +  +++I I C  ++G I +A   HN + EM 
Sbjct: 495 VIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQA---HNWLDEMV 551

Query: 478 Q--------------------------------------VPSVAAYNCLTKGLCKIGEID 499
           +                                       P+V  Y  L  G CK G I+
Sbjct: 552 RDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIE 611

Query: 500 AAMMLVRDCLG---------------NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
            A  +     G               NVA  P    Y   +  +C++ + +   ++L  M
Sbjct: 612 KACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETM 671

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
             +GC PN ++  A+I G CK   L+EA++VF  + E       N   Y  ++    K K
Sbjct: 672 FVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGY--NPNVYTYSSLIDRLFKDK 729

Query: 605 TADLVLSGL 613
             DLVL  L
Sbjct: 730 RLDLVLKVL 738



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 99/464 (21%), Positives = 201/464 (43%), Gaps = 38/464 (8%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           IL  M    C P    + +++       +     ++ ++M+K   +   + Y  LI  +C
Sbjct: 365 ILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSIC 424

Query: 250 KGGRV------VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
            GG +          + + EM   G ++++         L G GK  KA  ++ +++ +G
Sbjct: 425 SGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNG 484

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
           +  D   Y+ +IG LC   + + A+ LF+      + PD  T   L+ C ++ G +    
Sbjct: 485 FVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAH 544

Query: 364 KLLAQM--EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMG 420
             L +M  +  + +V         +L  K +++ +A ++FE +  KG + +V  Y  L+ 
Sbjct: 545 NWLDEMVRDGCEPTVVTYTTLIHAYL--KAKKVSVANELFELMIAKGCFPNVITYTALID 602

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES-------GDILEA-CECHN- 471
              + G ++KA  ++ +MRG + ++  +     I+ +V         G +++  C+ H  
Sbjct: 603 GYCKSGNIEKACQIYARMRG-DADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKV 661

Query: 472 ----KIIEMSQV----PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
                ++E   V    P+   Y+ L  G CK  ++D A  +    + +    P  + Y+ 
Sbjct: 662 KDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEH-GYNPNVYTYSS 720

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I  + +    + +++VL++M +  C PN VI + +I G+ K    +EA K+   + E+ 
Sbjct: 721 LIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKG 780

Query: 584 LLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
              + N + Y  ++    K    D  L   +  G      +KGC
Sbjct: 781 --CKPNVVTYTAMIDGFGKAGKVDKCLELFREMG------SKGC 816



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 172/397 (43%), Gaps = 28/397 (7%)

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
            +  R L      +   +V  EM  +    D   Y  +I  LC   RV     LF+EMK 
Sbjct: 458 VSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKG 517

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G++ D   Y +LI+     G + +A + L ++V  G    +  Y ++I    + K+   
Sbjct: 518 TGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSV 577

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME------------KLKF 374
           A +LFE+ +     P+  T   L+    + G ++   ++ A+M             K+K 
Sbjct: 578 ANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKN 637

Query: 375 SVAA--DLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVK 429
           +VA   ++  +   + G  K  ++  A D+ E +   G   +  +Y+ L+    +  ++ 
Sbjct: 638 NVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLD 697

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
           +A  +F KM       N  ++S  I    +   +    +  +K++E S  P++  Y  + 
Sbjct: 698 EAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMI 757

Query: 490 KGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
            GL K+ + D A     MM  + C  NV +      Y   I    ++G+ +K +E+  EM
Sbjct: 758 DGLSKVAKTDEAYKLMLMMEEKGCKPNVVT------YTAMIDGFGKAGKVDKCLELFREM 811

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
             +GC PN V  + +I+  C  G L+EA  +   +++
Sbjct: 812 GSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQ 848



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/418 (20%), Positives = 178/418 (42%), Gaps = 38/418 (9%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV---------- 238
           E+ E M    C P+V  YTA+I       N++   +++  M+ D    DV          
Sbjct: 580 ELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNV 639

Query: 239 ------MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
                 + Y  L+ GLCK  +V    +L   M  +G   +  +Y  LI+G     K+ +A
Sbjct: 640 AEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEA 699

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
            ++   +V+ GY  ++  Y+S+I  L + K+ D   K+    +++  AP+      ++  
Sbjct: 700 QEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDG 759

Query: 353 CAEMGRMDNFFKLLAQMEKLK-----FSVAADLEKFFEFLVGKEERIMMALDVFEELKGK 407
            +++ + D  +KL+  ME+        +  A ++ F     GK  ++   L++F E+  K
Sbjct: 760 LSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGF-----GKAGKVDKCLELFREMGSK 814

Query: 408 GYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH----VESGD 462
           G + +   Y +L+      G + +A  L  +M+      +  S+   I+ +    + S  
Sbjct: 815 GCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLG 874

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKY 521
           +LE  E      +    P +  Y  L     K G ++ A+ L ++ +  +++    +  Y
Sbjct: 875 LLEEVE------KNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLY 928

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
              I     + +     E+  +M ++G  P+      ++ G+ +    EEA ++  +L
Sbjct: 929 TSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSL 986



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 149/334 (44%), Gaps = 23/334 (6%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ +  ++LE M  + C+P+   Y A+I        LD    V+ +M +     +V  Y 
Sbjct: 660 KVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYS 719

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +LI  L K  R+    ++  +M EN    +  IY  +I+GL    K  +A  L+  + + 
Sbjct: 720 SLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEK 779

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + ++  Y ++I G  +  + DK  +LF        AP+F T   L+  C   G +D  
Sbjct: 780 GCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEA 839

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI---YNILM 419
           + LL +M++  +     +  + + + G +   +++L + EE++  G  S PI   Y +L+
Sbjct: 840 YALLEEMKQTYW--PKHVSSYCKVIEGYKREFILSLGLLEEVEKNG--SAPIILLYKVLI 895

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA---------IQCHVESGDILEACECH 470
              ++ G ++ AL        L+ EV S S S+A         I     +  I  A E  
Sbjct: 896 DNFVKAGRLEVAL-------ELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAFELF 948

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
             +I    +P +  +  L  GL ++   + A+ L
Sbjct: 949 YDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQL 982



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 7/194 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ + LE+  +M    C P+   YT +I    A  +LD    + EEMK+      V +Y
Sbjct: 799 GKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSY 858

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I G  +   +  G  L  E+++NG      +Y VLI+  V  G++  A +L K+++ 
Sbjct: 859 CKVIEGYKREFILSLG--LLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVIS 916

Query: 302 SGYR--ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +     A   +Y S+I       +   A++LF   ++D + PD  T   LL+    + R 
Sbjct: 917 ASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRW 976

Query: 360 DNFFKL---LAQME 370
           +   +L   L QM+
Sbjct: 977 EEALQLSDSLCQMD 990


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 148/536 (27%), Positives = 245/536 (45%), Gaps = 37/536 (6%)

Query: 95  AFRKNQF---QWGPQVVTELSKLRRVTPDLVAEVL-KVENNPTLASKFFHWAGKQKGYKH 150
           AF KN +   Q+G  V+T+        P L   VL  +   P +A +FF W   Q  +K 
Sbjct: 67  AFCKNNWVSDQFGA-VITD--------PHLFIRVLHSMRIRPRVALRFFRWVMAQPDFKE 117

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDS-----------QGRIAEMLEILEKMRRNLC 199
           +   + A+   L  N+L  AA  V E + S            G +  +L + +KM RN  
Sbjct: 118 SEFVFCAILDILVGNDLMHAAYWVMERVVSFEMHGVVDVLIAGHVXCLL-VFDKMIRNGL 176

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
            PDV     ++RVL  E  L     V+  M++  ++  V+ Y T++   CK GRV +  E
Sbjct: 177 LPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALE 236

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L  EM+E G   +   Y VL+ GL  +G++ +A  L++++++SG       YN +I G C
Sbjct: 237 LLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFC 296

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +   F +A+ L E  V     P  ST N L+    +  ++       + M K KF+   D
Sbjct: 297 QKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFT--PD 354

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFG 436
           +  F   L G  +   I  A  +F+ELK +    +V  YN L+  L   G +  AL L  
Sbjct: 355 IVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKK 414

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M    L  +  +++I +    + G +  A    N+++     P   AYN    G  KI 
Sbjct: 415 EMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIA 474

Query: 497 EIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
           +   A  +  + L   A+G  P    Y + +  +C+ G  E+  ++L  M  +G  P+ V
Sbjct: 475 DTSVAFSMQEEML---AAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHV 531

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVL 610
             ++II+G  K+G L +AR+VF  +  + +    + + Y  ++  H  K+  DL  
Sbjct: 532 TYTSIINGFVKNGHLRKAREVFNEMLSKGV--APSVVTYTVLIHAHAAKQMLDLAF 585



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 115/506 (22%), Positives = 202/506 (39%), Gaps = 59/506 (11%)

Query: 125 VLKVENNPTLASKFFHWAG--KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDS 180
           +L+V  +  L SK  +  G  +Q G K    +YN +  +YC                   
Sbjct: 186 ILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC------------------K 227

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ + LE+L +M+   C P+   Y  ++  L+ +  L+    + EEM    +      
Sbjct: 228 EGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYT 287

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G C+ G  V   +L  EM         + Y  L+ GL    +V        D++
Sbjct: 288 YNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDML 347

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            S +  D+  +NS++ G CR     +A+ LF+     DL P   T N L+      G +D
Sbjct: 348 KSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLD 407

Query: 361 NFFKLLAQMEK-----------------LKFSVAADLEKFFEFLVGK---------EERI 394
              +L  +M                    K    +    FF  ++ K           RI
Sbjct: 408 AALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRI 467

Query: 395 M---------MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
           +         +A  + EE+   G+   V  YN+ + AL + G  ++A  L   M    L 
Sbjct: 468 VGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLI 527

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            + ++++  I   V++G + +A E  N+++     PSV  Y  L         +D A M 
Sbjct: 528 PDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMY 587

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
               L           Y   I  +C +   ++  +  +EM ++G  PN+   + +I+  C
Sbjct: 588 FSKMLEKSVPANV-ITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESC 646

Query: 565 KHGTLEEARKVFTNLRERKLLTEANT 590
             G  EEA +++  + +RK+  ++ T
Sbjct: 647 NMGYWEEALRLYREMLDRKIQPDSFT 672



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 136/332 (40%), Gaps = 41/332 (12%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I+E   + ++++     P V  Y  +I  L     LDA LR+ +EM    +  D+  Y
Sbjct: 369 GCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTY 428

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDR---------------------------- 273
             L+ G  K G V      F EM   G+  DR                            
Sbjct: 429 TILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLA 488

Query: 274 -------AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
                    Y V +  L  +G   +ACDLL+++V  G   D   Y SII G  +     K
Sbjct: 489 AGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRK 548

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A ++F   +   +AP   T   L+   A    +D  F   ++M  L+ SV A++  +   
Sbjct: 549 AREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKM--LEKSVPANVITYNAI 606

Query: 387 LVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNL 443
           + G     R+  A   F+E++ KG       Y IL+     +G  ++AL L+ +M    +
Sbjct: 607 INGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKI 666

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           + +S + S+ ++ ++     + A +C   +I+
Sbjct: 667 QPDSFTHSVFLK-NLHRDYQVHAVQCVESLIQ 697



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 19/196 (9%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEML------------------ 188
           G+  +  +YN   + L +   F  A  + E M S G I + +                  
Sbjct: 490 GFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKA 549

Query: 189 -EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            E+  +M      P V  YT +I   AA++ LD     + +M +  V A+V+ Y  +I G
Sbjct: 550 REVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIING 609

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC   R+   ++ F EM+E GIL ++  Y +LI      G   +A  L ++++D   + D
Sbjct: 610 LCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPD 669

Query: 308 LGIYNSIIGGLCRVKQ 323
              ++  +  L R  Q
Sbjct: 670 SFTHSVFLKNLHRDYQ 685


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 225/514 (43%), Gaps = 33/514 (6%)

Query: 103 WGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           WGP     LS L  +  P+ V  VL+   +   A ++F W  ++    H   SYN+L   
Sbjct: 48  WGPSAENALSALNFKPQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLV 107

Query: 162 LSRNNLFRAADQVPELMDSQG-------------------RIAEMLEILEKMRRNLCKPD 202
           ++R   F A DQ+   M   G                   ++ E  ++++ MR+   +P 
Sbjct: 108 MARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQNMRKFKFRPA 167

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
             AYT +I   +A  + D  L ++++M++   E  V  + TLI G  K GRV     L  
Sbjct: 168 FSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLD 227

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EMK + +  D  +Y V I+     GKV  A     ++  +G + D   Y S+IG LC+  
Sbjct: 228 EMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKAN 287

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE- 381
           + D+A ++FE   ++   P     N +++     G+ D  + LL + ++ K S+ + +  
Sbjct: 288 RLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLL-ERQRAKGSIPSVIAY 346

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
                 + K  ++  AL VFEE+K     ++  YNIL+  L   G++  A  L   M+  
Sbjct: 347 NCILTCLRKMGKVDEALRVFEEMKKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKA 406

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            L  N  + +I +    +S  + EAC    ++      P    +  L  GL K+G +D A
Sbjct: 407 GLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDA 466

Query: 502 M-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
                 ML  DC  N         Y   I +    G  E   ++  +M  + C P+  + 
Sbjct: 467 YKIYEKMLDSDCRTN------SIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLL 520

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +  +  M K G  E+ R +F  ++ R+ + +A +
Sbjct: 521 NTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARS 554



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 120/500 (24%), Positives = 220/500 (44%), Gaps = 47/500 (9%)

Query: 114 LRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQ 173
           L  V  D   +V KV+    +A KFFH   +  G K +  +Y ++   L + N    A +
Sbjct: 240 LYNVCIDSFGKVGKVD----MAWKFFHEI-EANGLKPDEVTYTSMIGVLCKANRLDEAVE 294

Query: 174 VPELMD-------------------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
           + E ++                   S G+  E   +LE+ R     P V AY  ++  L 
Sbjct: 295 MFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLR 354

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
               +D  LRV+EEMKKD    ++  Y  LI  LC+ G++    EL   M++ G+  +  
Sbjct: 355 KMGKVDEALRVFEEMKKD-AAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVR 413

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
              ++++ L    K+ +AC + + +       D   + S+I GL +V + D AYK++E  
Sbjct: 414 TVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKM 473

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL-----VG 389
           +  D   +      L+      GR ++  K+   M  +  + + DL+    ++      G
Sbjct: 474 LDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDM--VNQNCSPDLQLLNTYMDCMFKAG 531

Query: 390 KEERIMMALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
           + E+      +FEE+K + +  VP    Y+IL+  L++ G   +   LF  M+     ++
Sbjct: 532 EPEK---GRAMFEEIKSRRF--VPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLD 586

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           + +++I I    + G + +A +   ++      P+V  Y  +  GL KI  +D A ML  
Sbjct: 587 TRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFE 646

Query: 507 DCLGNVASGPTEFK---YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           +      S   E     Y+  I    + G  ++   +L E+ Q+G  PN    ++++  +
Sbjct: 647 E----AKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDAL 702

Query: 564 CKHGTLEEARKVFTNLRERK 583
            K   + EA   F +++E K
Sbjct: 703 VKAEEINEALVCFQSMKELK 722



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 187/408 (45%), Gaps = 6/408 (1%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           +++   G++    E+ + M++    P+V     M+  L   + LD    ++E+M   +  
Sbjct: 385 DMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCT 444

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            D + + +LI GL K GRV   ++++ +M ++    +  +Y  LI+     G+      +
Sbjct: 445 PDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKI 504

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
            KD+V+     DL + N+ +  + +  + +K   +FE        PD  + + L+    +
Sbjct: 505 YKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIK 564

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SV 412
            G  +  ++L   M++       D   +   + G  K  ++  A  + EE+K KG+  +V
Sbjct: 565 AGFANETYELFYSMKEQ--GCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTV 622

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             Y  ++  L +I  + +A  LF + +   +E+N + +S  I    + G I EA     +
Sbjct: 623 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEE 682

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           +++    P+V  +N L   L K  EI+ A++  +  +  +   P +  Y + I  +C+  
Sbjct: 683 LMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQS-MKELKCTPNQVTYGILINGLCKVR 741

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           +  K      EM ++G  P+ +  + +ISG+ K G + EA  +F   +
Sbjct: 742 KFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFK 789



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 149/315 (47%), Gaps = 3/315 (0%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           + GR  +  +I + M    C PD+      +  +      +    ++EE+K      D  
Sbjct: 494 NHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDAR 553

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y  LI GL K G     +ELF  MKE G ++D   Y ++I+G    GKV KA  LL+++
Sbjct: 554 SYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEM 613

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G+   +  Y S+I GL ++ + D+AY LFE      +  +    + L+    ++GR+
Sbjct: 614 KTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRI 673

Query: 360 DNFFKLLAQ-MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKG-KGYSSVPIYNI 417
           D  + +L + M+K             + LV K E I  AL  F+ +K  K   +   Y I
Sbjct: 674 DEAYLILEELMQKGLTPNVYTWNSLLDALV-KAEEINEALVCFQSMKELKCTPNQVTYGI 732

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L ++ +  KA   + +M+   ++ +++S++  I    ++G+I EA    ++     
Sbjct: 733 LINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792

Query: 478 QVPSVAAYNCLTKGL 492
            VP  A YN + +GL
Sbjct: 793 GVPDSACYNAMIEGL 807



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 169/401 (42%), Gaps = 2/401 (0%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ +  +I EKM  + C+ +   YT++I+        +   +++++M       D+   
Sbjct: 461 GRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLL 520

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T +  + K G   +G  +F E+K    + D   Y +LI GL+  G   +  +L   + +
Sbjct: 521 NTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKE 580

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   YN +I G C+  + +KAY+L E        P   T   ++   A++ R+D 
Sbjct: 581 QGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDE 640

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
            + L  + +  +  +   +        GK  RI  A  + EEL  KG + +V  +N L+ 
Sbjct: 641 AYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLD 700

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           AL++  E+ +AL  F  M+ L    N +++ I I    +     +A     ++ +    P
Sbjct: 701 ALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKP 760

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           S  +Y  +  GL K G I  A  L      N    P    Y   I  +     A     +
Sbjct: 761 STISYTTMISGLAKAGNIAEAGALFDRFKAN-GGVPDSACYNAMIEGLSNGNRAMDAFSL 819

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
             E  + G   +   C  ++  + K+  LE+A  V   LRE
Sbjct: 820 FEETRRRGLHIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRE 860


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 148/536 (27%), Positives = 245/536 (45%), Gaps = 37/536 (6%)

Query: 95  AFRKNQF---QWGPQVVTELSKLRRVTPDLVAEVL-KVENNPTLASKFFHWAGKQKGYKH 150
           AF KN +   Q+G  V+T+        P L   VL  +   P +A +FF W   Q  +K 
Sbjct: 67  AFCKNNWVSDQFGA-VITD--------PHLFIRVLHSMRIRPRVALRFFRWVMAQPDFKE 117

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDS-----------QGRIAEMLEILEKMRRNLC 199
           +   + A+   L  N+L  AA  V E + S            G +  +L + +KM RN  
Sbjct: 118 SEFVFCAILDILVGNDLMHAAYWVMERVVSFEMHGVVDVLIAGHVXCLL-VFDKMIRNGL 176

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
            PDV     ++RVL  E  L     V+  M++  ++  V+ Y T++   CK GRV +  E
Sbjct: 177 LPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALE 236

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L  EM+E G   +   Y VL+ GL  +G++ +A  L++++++SG       YN +I G C
Sbjct: 237 LLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFC 296

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +   F +A+ L E  V     P  ST N L+    +  ++       + M K KF+   D
Sbjct: 297 QKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFT--PD 354

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFG 436
           +  F   L G  +   I  A  +F+ELK +    +V  YN L+  L   G +  AL L  
Sbjct: 355 IVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKK 414

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M    L  +  +++I +    + G +  A    N+++     P   AYN    G  KI 
Sbjct: 415 EMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIA 474

Query: 497 EIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
           +   A  +  + L   A+G  P    Y + +  +C+ G  E+  ++L  M  +G  P+ V
Sbjct: 475 DTSVAFSMQEEML---AAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHV 531

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVL 610
             ++II+G  K+G L +AR+VF  +  + +    + + Y  ++  H  K+  DL  
Sbjct: 532 TYTSIINGFVKNGHLRKAREVFNEMLSKGV--APSVVTYTVLIHAHAAKQMLDLAF 585



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 117/507 (23%), Positives = 204/507 (40%), Gaps = 61/507 (12%)

Query: 125 VLKVENNPTLASKFFHWAG--KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDS 180
           +L+V  +  L SK  +  G  +Q G K    +YN +  +YC                   
Sbjct: 186 ILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC------------------K 227

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ + LE+L +M+   C P+   Y  ++  L+ +  L+    + EEM    +      
Sbjct: 228 EGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYT 287

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G C+ G  V   +L  EM         + Y  L+ GL    +V        D++
Sbjct: 288 YNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDML 347

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            S +  D+  +NS++ G CR     +A+ LF+     DL P   T N L+      G +D
Sbjct: 348 KSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLD 407

Query: 361 NFFKLLAQMEK-----------------LKFSVAADLEKFFEFLVGK---------EERI 394
              +L  +M                    K    +    FF  ++ K           RI
Sbjct: 408 AALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRI 467

Query: 395 M---------MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
           +         +A  + EE+   G+   V  YN+ + AL + G  ++A  L   M    L 
Sbjct: 468 VGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLI 527

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            + ++++  I   V++G + +A E  N+++     PSV  Y  L         +D A M 
Sbjct: 528 PDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMY 587

Query: 505 VRDCLGNVASGPTE-FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
               L    S P     Y   I  +C +   ++  +  +EM ++G  PN+   + +I+  
Sbjct: 588 FSKMLEK--SVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINES 645

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANT 590
           C  G  EEA +++  + +RK+  ++ T
Sbjct: 646 CNMGYWEEALRLYREMLDRKIQPDSFT 672



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 136/332 (40%), Gaps = 41/332 (12%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I+E   + ++++     P V  Y  +I  L     LDA LR+ +EM    +  D+  Y
Sbjct: 369 GCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTY 428

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDR---------------------------- 273
             L+ G  K G V      F EM   G+  DR                            
Sbjct: 429 TILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLA 488

Query: 274 -------AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
                    Y V +  L  +G   +ACDLL+++V  G   D   Y SII G  +     K
Sbjct: 489 AGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRK 548

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A ++F   +   +AP   T   L+   A    +D  F   ++M  L+ SV A++  +   
Sbjct: 549 AREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKM--LEKSVPANVITYNAI 606

Query: 387 LVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNL 443
           + G     R+  A   F+E++ KG       Y IL+     +G  ++AL L+ +M    +
Sbjct: 607 INGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKI 666

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           + +S + S+ ++ ++     + A +C   +I+
Sbjct: 667 QPDSFTHSVFLK-NLHRDYQVHAVQCVESLIQ 697



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 19/196 (9%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEML------------------ 188
           G+  +  +YN   + L +   F  A  + E M S G I + +                  
Sbjct: 490 GFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKA 549

Query: 189 -EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            E+  +M      P V  YT +I   AA++ LD     + +M +  V A+V+ Y  +I G
Sbjct: 550 REVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIING 609

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC   R+   ++ F EM+E GIL ++  Y +LI      G   +A  L ++++D   + D
Sbjct: 610 LCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPD 669

Query: 308 LGIYNSIIGGLCRVKQ 323
              ++  +  L R  Q
Sbjct: 670 SFTHSVFLKNLHRDYQ 685


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 126/502 (25%), Positives = 229/502 (45%), Gaps = 24/502 (4%)

Query: 101 FQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALA 159
           F+WGP     L  L  RV   LV E++K +    +  +FF WA K++ Y+H+ ++Y AL 
Sbjct: 71  FKWGPDAEKALEVLMLRVDHWLVREIMKTDIGVNVKMQFFRWAAKRRNYEHDTSTYMALI 130

Query: 160 YCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRN-LCKPDVFAYTAMIRVLAAERN 218
           +CL             E+++  G   EM +++++M RN +C       + ++R+L   + 
Sbjct: 131 HCL-------------EVVEQYG---EMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKM 174

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG-ILIDRAIYG 277
           +   + ++ ++K    +    AY ++I+ L   G+  + HEL+ EM   G    D   Y 
Sbjct: 175 VSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYS 234

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
            LI      G+   A  LL ++ D+G +    IY  ++    ++     A  LFE     
Sbjct: 235 ALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQ 294

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA 397
              PD  T   L+    + GR+D  +    +M++        +       +GK  R+  A
Sbjct: 295 YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDA 354

Query: 398 LDVFEELKG-KGYSSVPIYNILMGALLEI-GEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           + +F+E+   +   SV  YN ++ AL E      +    F +M+   +  +S ++SI I 
Sbjct: 355 MKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILID 414

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
              ++  + +A     ++ E    P  AAY  L   L K    D A  L ++   N  S 
Sbjct: 415 GFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSS 474

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
            +   YA+ I H+ ++G  +  I + +EM + GC P+    +A++SG+ + G L+EA   
Sbjct: 475 SSRV-YAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALST 533

Query: 576 FTNLRERKLLTEANTIVYDEIL 597
              ++E   + + N+  Y+ IL
Sbjct: 534 MRRMQEHGCIPDINS--YNIIL 553



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 69/150 (46%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
            R+ + + +LE+M      P   AY ++I  L   +  D    +++E+K++   +    Y
Sbjct: 420 NRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVY 479

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I  L K GR+     +F EM + G   D   Y  L+ GL   G + +A   ++ + +
Sbjct: 480 AVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQE 539

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
            G   D+  YN I+ GL + +     ++ F
Sbjct: 540 HGCIPDINSYNIILNGLQKQEDLIVQWRCF 569


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 129/460 (28%), Positives = 210/460 (45%), Gaps = 31/460 (6%)

Query: 117 VTPDLVA-----EVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA 171
           +TPD VA       L  +N     SK       + G + +  SYN +  CL  +  +  A
Sbjct: 193 LTPDTVAYNALLNGLCKQNQLEEVSKLLEEM-VEAGREPDTFSYNTVVACLCESGKYEEA 251

Query: 172 DQVPE----------------LMDSQGRIAEMLE---ILEKMRRNLCKPDVFAYTAMIRV 212
            ++ E                LMD   ++++M E   +LE M    C P V  YT +I  
Sbjct: 252 GKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGG 311

Query: 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
            +    L    RV E+M K  +  D++ Y  L+ GLCK G++   HEL   M E     D
Sbjct: 312 FSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPD 371

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              Y +L+ GL   GKV  A  LL+ +++ G + +L  +N++I G C+  + D+ +K+ E
Sbjct: 372 VVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLE 431

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392
           +  +    PD  T + L+    +  RM + F +L  +   K S ++ LE       GK E
Sbjct: 432 LMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILG-ISPDKASYSSMLEGLCS--TGKVE 488

Query: 393 RIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
                +D+  +      SS   Y +++G L ++    +AL +   M     E N  ++SI
Sbjct: 489 EAQEVMDLMTKQGCPPTSSH--YALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSI 546

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
            I    ++  + +A    + ++E   VP VA Y  L  G CKI ++DAA    +  + + 
Sbjct: 547 LINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKT-MRDS 605

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
              P +  Y + I   C+SG  EK IEV+  M ++GC P+
Sbjct: 606 GCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPD 645



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 141/572 (24%), Positives = 243/572 (42%), Gaps = 74/572 (12%)

Query: 71  SPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAE--VLKV 128
           S PS P         S     IT   R    +   ++  E+   RR +PD++    +LK 
Sbjct: 17  SDPSKPSN-------STYGALITGFSRAGNSKMVLEIANEMLA-RRFSPDVITHNTILKA 68

Query: 129 ENN-PTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEM 187
                 L     H+ GK       + S  A  YC+  + L +             RI E 
Sbjct: 69  YCQIGDLDRALSHFRGKM------WCSPTAFTYCILIHGLCQCQ-----------RIDEA 111

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            ++L++M +  C PD   Y  +I  L     +DA   V + M +     DV+ Y +LI+G
Sbjct: 112 YQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVG 171

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            C+   +    +L  +MKE+G+  D   Y  L+ GL  + ++ +   LL+++V++G   D
Sbjct: 172 CCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPD 231

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
              YN+++  LC   ++++A K+ E  ++    PD  T N L+    ++ +MD   +LL 
Sbjct: 232 TFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLE 291

Query: 368 QM---------------------------------EKLKFSVAADLEKFFEFLVG--KEE 392
            M                                 +  K  ++ DL  +   L G  K  
Sbjct: 292 DMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAG 351

Query: 393 RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
           ++  A ++ E +  K  +  V  Y+IL+  L ++G+V  A  L   M     + N ++F+
Sbjct: 352 KLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFN 411

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
             I    ++G + E  +    + E+S  P V  Y+ L  G CK   +       +D    
Sbjct: 412 TMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRM-------QDAFAI 464

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
           +   P +  Y+  +  +C +G+ E+  EV++ MT++GCPP     + II G+C     +E
Sbjct: 465 LGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDE 524

Query: 572 ARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           A K+   + ER    E N   Y  ILI  + K
Sbjct: 525 ALKMLQVMSERG--CEPNLYTY-SILINGLCK 553



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 169/387 (43%), Gaps = 42/387 (10%)

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
           R + G+  FRE   +      + YG LI G    G      ++  +++   +  D+  +N
Sbjct: 4   RPLEGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHN 63

Query: 313 SI---------------------------------IGGLCRVKQFDKAYKLFEVTVQDDL 339
           +I                                 I GLC+ ++ D+AY+L +  +Q D 
Sbjct: 64  TILKAYCQIGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDC 123

Query: 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMA 397
            PD +  N L+    +MG++D    +L  M  L+ S   D+  +   +VG  +   +  A
Sbjct: 124 HPDAAVYNCLIAGLCKMGKIDAARNVLKMM--LERSCVPDVITYTSLIVGCCQTNALDEA 181

Query: 398 LDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
             + E++K  G +   + YN L+  L +  ++++   L  +M     E ++ S++  + C
Sbjct: 182 RKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVAC 241

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
             ESG   EA +   K+IE    P V  YN L  G CK+ ++D A  L+ D +G   + P
Sbjct: 242 LCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCA-P 300

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           T   Y   I    R+        V+ +M + G  P+ V  + ++ G+CK G LEEA ++ 
Sbjct: 301 TVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELL 360

Query: 577 TNLRERKLLTEANTIVYDEILIEHMKK 603
             + E+     A  +V   IL+  + K
Sbjct: 361 EVMVEKDC---APDVVTYSILVNGLCK 384



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 79/171 (46%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G++ E  E+++ M +  C P    Y  +I  L      D  L++ + M +   E ++ 
Sbjct: 483 STGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLY 542

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI GLCK  RV     +   M E G + D A Y  LI+G     K+  A    K +
Sbjct: 543 TYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTM 602

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            DSG   D   YN +I G C+    +KA ++ ++ ++    PD +T   L+
Sbjct: 603 RDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLM 653



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 21/230 (9%)

Query: 108 VTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNL 167
           V EL K    TPD+V     ++      +     A    G   + ASY+++   L     
Sbjct: 429 VLELMKEVSCTPDVVTYSTLIDG--YCKANRMQDAFAILGISPDKASYSSMLEGLCSTGK 486

Query: 168 FRAADQVPELMDSQG-------------------RIAEMLEILEKMRRNLCKPDVFAYTA 208
              A +V +LM  QG                   R  E L++L+ M    C+P+++ Y+ 
Sbjct: 487 VEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSI 546

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           +I  L   + ++  + V + M +     DV  Y +LI G CK  ++   ++ F+ M+++G
Sbjct: 547 LINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSG 606

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
              D+  Y +LI G    G V KA ++++ +++ G   D   Y S++  L
Sbjct: 607 CEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSL 656



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 51/104 (49%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ + + +L+ M    C PDV  YT++I        +DA  + ++ M+    E D +AY 
Sbjct: 556 RVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYN 615

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
            LI G C+ G V +  E+ + M E G   D A Y  L+  L  E
Sbjct: 616 ILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSLTTE 659


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 225/514 (43%), Gaps = 33/514 (6%)

Query: 103 WGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           WGP     LS L  +  P+ V  VL+   +   A ++F W  ++    H   SYN+L   
Sbjct: 48  WGPSAENTLSALSFKPQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLV 107

Query: 162 LSRNNLFRAADQVPELMDSQG-------------------RIAEMLEILEKMRRNLCKPD 202
           ++R   F A DQ+   M   G                   ++ E  ++++ MR+   +P 
Sbjct: 108 MARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPA 167

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
             AYT +I   +A  + D  L ++++M++   E  V  + TLI G  K GRV     L  
Sbjct: 168 FSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLD 227

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EMK + +  D  +Y V I+     GKV  A     ++  +G + D   Y S+IG LC+  
Sbjct: 228 EMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKAN 287

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE- 381
           + D+A ++FE   ++   P     N +++     G+ D  + LL + ++ K S+ + +  
Sbjct: 288 RLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLL-ERQRAKGSIPSVIAY 346

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
                 + K  ++  AL VFEE+K     ++  YNIL+  L   G++  A  L   M+  
Sbjct: 347 NCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKA 406

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            L  N  + +I +    +S  + EAC    ++      P    +  L  GL K+G +D A
Sbjct: 407 GLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDA 466

Query: 502 M-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
                 ML  DC  N         Y   I +    G  E   ++  +M  + C P+  + 
Sbjct: 467 YKVYEKMLDSDCRTN------SIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLL 520

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +  +  M K G  E+ R +F  ++ R+ + +A +
Sbjct: 521 NTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARS 554



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 119/500 (23%), Positives = 221/500 (44%), Gaps = 47/500 (9%)

Query: 114 LRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQ 173
           L  V  D   +V KV+    +A KFFH   +  G K +  +Y ++   L + N    A +
Sbjct: 240 LYNVCIDSFGKVGKVD----MAWKFFHEI-EANGLKPDEVTYTSMIGVLCKANRLDEAVE 294

Query: 174 VPELMD-------------------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
           + E ++                   S G+  E   +LE+ R     P V AY  ++  L 
Sbjct: 295 MFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLR 354

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
               +D  L+V+EEMKKD    ++  Y  LI  LC+ G++    EL   M++ G+  +  
Sbjct: 355 KMGKVDEALKVFEEMKKD-AAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVR 413

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
              ++++ L    K+ +AC + +++       D   + S+I GL +V + D AYK++E  
Sbjct: 414 TVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM 473

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL-----VG 389
           +  D   +      L+      GR ++  K+   M  +  + + DL+    ++      G
Sbjct: 474 LDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDM--INQNCSPDLQLLNTYMDCMFKAG 531

Query: 390 KEERIMMALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
           + E+      +FEE+K + +  VP    Y+IL+  L++ G   +   LF  M+     ++
Sbjct: 532 EPEK---GRAMFEEIKARRF--VPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLD 586

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           + +++I I    + G + +A +   ++      P+V  Y  +  GL KI  +D A ML  
Sbjct: 587 TRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFE 646

Query: 507 DCLGNVASGPTEFK---YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           +      S   E     Y+  I    + G  ++   +L E+ Q+G  PN    ++++  +
Sbjct: 647 E----AKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDAL 702

Query: 564 CKHGTLEEARKVFTNLRERK 583
            K   + EA   F +++E K
Sbjct: 703 VKAEEINEALVCFQSMKELK 722



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 170/401 (42%), Gaps = 2/401 (0%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ +  ++ EKM  + C+ +   YT++I+        +   +++++M       D+   
Sbjct: 461 GRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLL 520

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T +  + K G   +G  +F E+K    + D   Y +LI GL+  G   +  +L   + +
Sbjct: 521 NTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKE 580

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   YN +I G C+  + +KAY+L E        P   T   ++   A++ R+D 
Sbjct: 581 QGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDE 640

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
            + L  + +  +  +   +        GK  RI  A  + EEL  KG + ++  +N L+ 
Sbjct: 641 AYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLD 700

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           AL++  E+ +AL  F  M+ L    N +++ I I    +     +A     ++ +    P
Sbjct: 701 ALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKP 760

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           S  +Y  +  GL K G I  A  L      N    P    Y   I  +     A     +
Sbjct: 761 STISYTTMISGLAKAGNIAEAGALFDRFKAN-GGVPDSACYNAMIEGLSNGNRAMDAFSL 819

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
             E  + G P +   C  ++  + K+  LE+A  V   LRE
Sbjct: 820 FEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRE 860



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 187/408 (45%), Gaps = 6/408 (1%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           +++   G++    E+ + M++    P+V     M+  L   + LD    ++EEM   +  
Sbjct: 385 DMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCT 444

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            D + + +LI GL K GRV   ++++ +M ++    +  +Y  LI+     G+      +
Sbjct: 445 PDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKI 504

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
            KD+++     DL + N+ +  + +  + +K   +FE        PD  + + L+    +
Sbjct: 505 YKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIK 564

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SV 412
            G  +  ++L   M++       D   +   + G  K  ++  A  + EE+K KG+  +V
Sbjct: 565 AGFANETYELFYSMKEQ--GCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTV 622

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             Y  ++  L +I  + +A  LF + +   +E+N + +S  I    + G I EA     +
Sbjct: 623 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEE 682

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           +++    P++  +N L   L K  EI+ A++  +  +  +   P +  Y + I  +C+  
Sbjct: 683 LMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQS-MKELKCTPNQVTYGILINGLCKVR 741

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           +  K      EM ++G  P+ +  + +ISG+ K G + EA  +F   +
Sbjct: 742 KFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFK 789



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 152/316 (48%), Gaps = 5/316 (1%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           + GR  +  +I + M    C PD+      +  +      +    ++EE+K      D  
Sbjct: 494 NHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDAR 553

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y  LI GL K G     +ELF  MKE G ++D   Y ++I+G    GKV KA  LL+++
Sbjct: 554 SYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEM 613

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G+   +  Y S+I GL ++ + D+AY LFE      +  +    + L+    ++GR+
Sbjct: 614 KTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRI 673

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKG-KGYSSVPIYN 416
           D  + +L ++  ++  +  +L  +   L  + K E I  AL  F+ +K  K   +   Y 
Sbjct: 674 DEAYLILEEL--MQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYG 731

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+  L ++ +  KA   + +M+   ++ +++S++  I    ++G+I EA    ++    
Sbjct: 732 ILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKAN 791

Query: 477 SQVPSVAAYNCLTKGL 492
             VP  A YN + +GL
Sbjct: 792 GGVPDSACYNAMIEGL 807


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/520 (23%), Positives = 232/520 (44%), Gaps = 58/520 (11%)

Query: 112 SKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA 171
           +   ++TP  + ++L++  N + + + F W G Q GY+H+F  Y  L   L  N  F+  
Sbjct: 71  NSFHKITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTI 130

Query: 172 DQVPELMDSQGRIAEMLEILEKMR------------------RNL--CKPDVFAYTAMIR 211
           D++   M  +G + +    +  MR                  RN+  C+P   +Y  ++ 
Sbjct: 131 DRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLE 190

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
           +L +         V+ +M    +   +  +  ++   C    +     L R+M ++G + 
Sbjct: 191 ILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVP 250

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           +  IY  LI  L    +V +A  LL+++   G   D   +N +I GLC+  + ++A K+ 
Sbjct: 251 NSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMV 310

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-------------------- 371
              +    APD  T   L+    ++GR+D    L  ++ K                    
Sbjct: 311 NRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLD 370

Query: 372 ----------LKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
                       + +  D+  +   + G  KE  + +AL+V  +++ KG   +V  Y IL
Sbjct: 371 DAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTIL 430

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    ++G++ +A  +  +M    L+ N++ F+  I    +   I EA E   ++     
Sbjct: 431 VDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGC 490

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVCRSGEAEK 536
            P V  +N L  GLC++ EI  A+ L+RD +  G VA+  T   Y   I    R GE ++
Sbjct: 491 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVT---YNTLINAFLRRGEIKE 547

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
             +++NEM  +G P +E+  +++I G+C+ G +++AR +F
Sbjct: 548 ARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLF 587



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 202/425 (47%), Gaps = 25/425 (5%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E L++LE+M    C PD   +  +I  L     ++   ++   M       D + Y 
Sbjct: 267 RVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYG 326

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            L+ GLCK GRV    +LF  + +  I+I    +  LI G V  G++  A  +L D+V S
Sbjct: 327 YLMNGLCKIGRVDAAKDLFYRIPKPEIVI----FNTLIHGFVTHGRLDDAKAVLSDMVTS 382

Query: 303 -GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  YNS+I G  +      A ++          P+  +   L+    ++G++D 
Sbjct: 383 YGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDE 442

Query: 362 FFKLLAQM--EKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIY 415
            + +L +M  + LK +        F  L+    KE RI  A+++F E+  KG    V  +
Sbjct: 443 AYNVLNEMSADGLKPNTVG-----FNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTF 497

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+  L E+ E+K AL+L   M    +  N+++++  I   +  G+I EA +  N+++ 
Sbjct: 498 NSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVF 557

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
                    YN L KGLC+ GE+D A  L    L +    P+     + I  +CRSG  E
Sbjct: 558 QGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD-GHAPSNISCNILINGLCRSGMVE 616

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIV 592
           + +E   EM   G  P+ V  +++I+G+C+ G +E+   +F     RKL  E    +T+ 
Sbjct: 617 EAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMF-----RKLQAEGIPPDTVT 671

Query: 593 YDEIL 597
           ++ ++
Sbjct: 672 FNTLM 676



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 163/395 (41%), Gaps = 36/395 (9%)

Query: 180 SQGRIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           + GR+ +   +L  M  +    PDV  Y ++I     E  +   L V  +M+    + +V
Sbjct: 365 THGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNV 424

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
            +Y  L+ G CK G++   + +  EM  +G+  +   +  LI     E ++ +A ++ ++
Sbjct: 425 YSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFRE 484

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +   G + D+  +NS+I GLC V +   A  L    + + +  +  T N L+      G 
Sbjct: 485 MPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGE 544

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL 418
           +    KL+ +M                              VF+   G     +  YN L
Sbjct: 545 IKEARKLVNEM------------------------------VFQ---GSPLDEIT-YNSL 570

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L   GEV KA  LF KM       +++S +I I     SG + EA E   +++    
Sbjct: 571 IKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGS 630

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P +  +N L  GLC+ G I+  + + R  L      P    +   +  +C+ G      
Sbjct: 631 TPDIVTFNSLINGLCRAGRIEDGLTMFRK-LQAEGIPPDTVTFNTLMSWLCKGGFVYDAC 689

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
            +L+E  ++G  PN    S ++  +    TL+  R
Sbjct: 690 LLLDEGIEDGFVPNHRTWSILLQSIIPQETLDRRR 724



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 130/317 (41%), Gaps = 47/317 (14%)

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +GYR    +Y  +IG L                       +F T++ LL+   + G +  
Sbjct: 105 NGYRHSFDVYQVLIGKL-------------------GANGEFKTIDRLLIQMKDEGIV-- 143

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI---YNIL 418
            FK     E L  S+  D +K      G+  R+M+ +          YS  P    YN++
Sbjct: 144 -FK-----ESLFISIMRDYDK--AGFPGQTTRLMLEMR-------NVYSCEPTFKSYNVV 188

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L+     K A  +F  M    +     +F + ++      +I  A      + +   
Sbjct: 189 LEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGC 248

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYALTILHVCRSGEAEK 536
           VP+   Y  L   L K   ++ A+ L+ +   +G V    T   +   IL +C+     +
Sbjct: 249 VPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAET---FNDVILGLCKFDRINE 305

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
             +++N M   G  P+++    +++G+CK G ++ A+ +F  + + +++   NT+++   
Sbjct: 306 AAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVI-FNTLIHG-- 362

Query: 597 LIEHMKKKTADLVLSGL 613
            + H +   A  VLS +
Sbjct: 363 FVTHGRLDDAKAVLSDM 379



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 123/301 (40%), Gaps = 43/301 (14%)

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
           IGG     +++K  K F++   D L   F  + P              +KLL    +L  
Sbjct: 48  IGGTDSANEWEKLLKPFDL---DSLRNSFHKITPF-----------QLYKLL----ELPL 89

Query: 375 SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNI--LMGALLEIGEV-KKA 431
           +V+  +E F     G +     + DV++ L GK  ++     I  L+  + + G V K++
Sbjct: 90  NVSTSMELFS--WTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKES 147

Query: 432 LYLF-----------GKMRGLNLEV-NSLSFSIAIQCHVESGDILEACECHN-------K 472
           L++            G+   L LE+ N  S     + +    +IL +  CH         
Sbjct: 148 LFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYD 207

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           ++     P++  +  + K  C + EID+A+ L+RD +      P    Y   I  + +  
Sbjct: 208 MLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRD-MTKHGCVPNSVIYQTLIHSLSKCN 266

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
              + +++L EM   GC P+    + +I G+CK   + EA K+   +  R    +  T  
Sbjct: 267 RVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYG 326

Query: 593 Y 593
           Y
Sbjct: 327 Y 327


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 130/521 (24%), Positives = 220/521 (42%), Gaps = 62/521 (11%)

Query: 101 FQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALA 159
           F+WGP     L  L  +V   LV EV+K +   ++  +FF WA +++ Y+H+ ++Y AL 
Sbjct: 67  FKWGPDAEKALEVLMMKVDHWLVREVMKTDVGVSVKMQFFRWAARKRNYEHDTSTYMALI 126

Query: 160 YCLS----------------RNNLFRAA----DQVPELMDSQGRIAEMLEILEKMRRNLC 199
            CL                 RN +          +  ++ +   I++ + I  +++   C
Sbjct: 127 RCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKARKC 186

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD-LVEADVMAYVTLIMGLCKGGRVVRGH 258
           +P   AY +MI +L  E   +    ++ EM  +     D + Y  LI   CK GR     
Sbjct: 187 QPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAI 246

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L  EMK+NG+     IY +L+  L     V  A  L +++     R D+  Y  +I GL
Sbjct: 247 WLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGL 306

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK-FSVA 377
            +  + D+AY  F    ++   PD   +N ++    + GR+D+  KL  +ME L+     
Sbjct: 307 GKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSV 366

Query: 378 ADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFG 436
                  + L   + R+      FE +KG G S  P  Y+IL+    +    +KA+ L  
Sbjct: 367 VTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLE 426

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M                                    E    P  AAY  L   L K  
Sbjct: 427 EMD-----------------------------------EKGFPPCPAAYCSLIDALGKAK 451

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
             D A  L ++   N  S      YA+ I H+ ++G  +  +++ +EM + GC PN    
Sbjct: 452 RYDLANELFQELKENCGSSSARV-YAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAY 510

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +A++SG+ + G L+EA      +++   + + N+  Y+ IL
Sbjct: 511 NALMSGLARAGMLDEALTTMRRMQDHGCIPDINS--YNIIL 549



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 115/278 (41%), Gaps = 34/278 (12%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           +  L +S+ R++E+    E+M+ +   P  F Y+ +I         +  + + EEM +  
Sbjct: 373 IKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKG 432

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
                 AY +LI  L K  R    +ELF+E+KEN       +Y V+I+ L   G++  A 
Sbjct: 433 FPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAV 492

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           DL  ++   G   ++  YN+++ GL R    D+A             PD ++ N +L   
Sbjct: 493 DLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNAL 552

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
           A+ G  D    +L  M++                                +K    S   
Sbjct: 553 AKTGGPDRAMGMLCNMKQ------------------------------SAIKPDAVS--- 579

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
            YN ++GAL   G  ++A  L  +M  +  + + +++S
Sbjct: 580 -YNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYS 616



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 11/175 (6%)

Query: 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTA 208
           K N  S +A  Y +   +L +A           GR+ + +++ ++M R  C P+V+AY A
Sbjct: 464 KENCGSSSARVYAVMIKHLGKA-----------GRLDDAVDLFDEMNRLGCTPNVYAYNA 512

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           ++  LA    LD  L     M+      D+ +Y  ++  L K G   R   +   MK++ 
Sbjct: 513 LMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSA 572

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           I  D   Y  ++  L   G   +A  L+K++   G+  DL  Y+SI+  + +V Q
Sbjct: 573 IKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAIGKVDQ 627


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 166/701 (23%), Positives = 273/701 (38%), Gaps = 148/701 (21%)

Query: 42  PNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHL------------SPIA 89
           P S S  H   P       P  LP ++T    S P   Q    L            S  A
Sbjct: 21  PFSTSSSHH--PL------PGLLPPEETSPLDSSPDLSQHYAFLRTSLLNSATTQTSNDA 72

Query: 90  RFITDAFRKNQFQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGY 148
             I++A R     +G +    L + R R++  LV EV+ +  +P    +FF WA +Q GY
Sbjct: 73  LSISNAIRTG---FGAETQNFLRQFRGRLSEPLVVEVMNLVKHPEFCVEFFLWASRQIGY 129

Query: 149 KHNFASYNALA---YCLSRNN-------LFRAADQVPELMDS-----------QGRIAEM 187
            H    YNAL     C + NN       L +  D   EL+              G     
Sbjct: 130 SHTPVVYNALIELLCCNAVNNDRVSHKFLMQIRDDDRELLRKLLNFLIQKCCRNGMWNVA 189

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM------------------ 229
           LE L +++    K     Y A+I+V      LD    V  EM                  
Sbjct: 190 LEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYS 249

Query: 230 --------------KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
                         +K+    D + Y  ++ GLC+        ++   M+    + +   
Sbjct: 250 LCKAGRCGDALSLLEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVT 309

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           Y +L+ G +G+G++G+   +L  ++  G   +  ++NS++   C+ + +  AYKLF+  +
Sbjct: 310 YRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMI 369

Query: 336 QDDLAPDFSTVNPLL--VCCAE-------------------------------------- 355
           +    P +   N  +  +C  E                                      
Sbjct: 370 KCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLC 429

Query: 356 -MGRMDNFFKLLAQMEKLKFSVAAD--LEKFFEFLVGKEERIMMALDVFEELKGKG-YSS 411
             G+ D  F+++ +M    F V  D    K   FL     ++  A  +FEE+K  G   S
Sbjct: 430 GAGKFDKAFEIICEMMSKGF-VPDDSTYSKVIGFLC-DASKVEKAFLLFEEMKKNGIVPS 487

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           V  Y IL+ +  + G +++A   F +M   N   N ++++  I  ++++  + +A    N
Sbjct: 488 VYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDA----N 543

Query: 472 KIIEM----SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG------------ 515
           K+ EM       P+V  Y  L  G CK G+ID A  +     G++ S             
Sbjct: 544 KLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDND 603

Query: 516 ---PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              P    Y   +  +C++   E+  E+L+ M+  GC PN+++  A+I G CK G LE A
Sbjct: 604 CETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENA 663

Query: 573 RKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
           ++VF  + ER      N   Y  ++    K+K  DLVL  L
Sbjct: 664 QEVFVKMSERGYC--PNLYTYSSLINSLFKEKRLDLVLKVL 702



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 173/405 (42%), Gaps = 29/405 (7%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  +  EI+ +M      PD   Y+ +I  L     ++    ++EEMKK+ +   V  Y
Sbjct: 432 GKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTY 491

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI   CK G + +    F EM  +    +   Y  LI   +   KV  A  L + ++ 
Sbjct: 492 TILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLL 551

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + ++  Y ++I G C+  Q DKA +++   +Q D+               E   +D 
Sbjct: 552 EGSKPNVVTYTALIDGHCKAGQIDKACQIY-ARMQGDI---------------ESSDIDM 595

Query: 362 FFKL----LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YN 416
           +FKL          + +    D        + K  R+  A ++ + +   G     I Y+
Sbjct: 596 YFKLDDNDCETPNIITYGALVD-------GLCKANRVEEAHELLDTMSVNGCEPNQIVYD 648

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+    + G+++ A  +F KM       N  ++S  I    +   +    +  +K++E 
Sbjct: 649 ALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLEN 708

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
           S  P+V  Y  +  GLCK+G+ + A  L+   +  V   P    Y   I    + G+ E+
Sbjct: 709 SCTPNVVIYTDMIDGLCKVGKTEEAYRLMLK-MEEVGCYPNVITYTAMIDGFGKIGKIEQ 767

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            +E+  +M  +GC PN +    +I+  C  G L+EA ++   +++
Sbjct: 768 CLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQ 812



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/414 (21%), Positives = 182/414 (43%), Gaps = 38/414 (9%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV---------- 238
           ++ E M     KP+V  YTA+I        +D   +++  M+ D+  +D+          
Sbjct: 544 KLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDND 603

Query: 239 ------MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
                 + Y  L+ GLCK  RV   HEL   M  NG   ++ +Y  LI+G    GK+  A
Sbjct: 604 CETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENA 663

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
            ++   + + GY  +L  Y+S+I  L + K+ D   K+    +++   P+      ++  
Sbjct: 664 QEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDG 723

Query: 353 CAEMGRMDNFFKLLAQMEKLK-----FSVAADLEKFFEFLVGKEERIMMALDVFEELKGK 407
             ++G+ +  ++L+ +ME++       +  A ++ F     GK  +I   L+++ ++  K
Sbjct: 724 LCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGF-----GKIGKIEQCLELYRDMCSK 778

Query: 408 GYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           G + +   Y +L+      G + +A  L  +M+      +  S+   I+    + + + +
Sbjct: 779 GCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGF--NREFITS 836

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT-----EFKY 521
               +++ E   VP  + Y  L     K G ++ A+ L+ +    ++S P+     ++ Y
Sbjct: 837 IGLLDELSENESVPVESLYRILIDNFIKAGRLEGALNLLEE----ISSSPSLAVANKYLY 892

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
              I  +  + + +K  E+   M  +   P       +I G+ + G  +EA ++
Sbjct: 893 TSLIESLSHASKVDKAFELYASMINKNVVPELSTFVHLIKGLTRVGKWQEALQL 946



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 133/301 (44%), Gaps = 11/301 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++    E+  KM      P+++ Y+++I  L  E+ LD  L+V  +M ++    +V+ Y
Sbjct: 658 GKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIY 717

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I GLCK G+    + L  +M+E G   +   Y  +I+G    GK+ +  +L +D+  
Sbjct: 718 TDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCS 777

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   +   Y  +I   C     D+A++L +   Q       S+   ++      G    
Sbjct: 778 KGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKII-----EGFNRE 832

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSSVP---IY 415
           F   +  +++L  + +  +E  +  L+    K  R+  AL++ EE+      +V    +Y
Sbjct: 833 FITSIGLLDELSENESVPVESLYRILIDNFIKAGRLEGALNLLEEISSSPSLAVANKYLY 892

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             L+ +L    +V KA  L+  M   N+     +F   I+     G   EA +  + I +
Sbjct: 893 TSLIESLSHASKVDKAFELYASMINKNVVPELSTFVHLIKGLTRVGKWQEALQLSDSICQ 952

Query: 476 M 476
           M
Sbjct: 953 M 953


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 147/593 (24%), Positives = 248/593 (41%), Gaps = 72/593 (12%)

Query: 64  LPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLR-RVTPDLV 122
           LP Q ++    DP    L      I +          F+WGP     L  L+ +V   LV
Sbjct: 15  LPTQNSKFSRRDPSVRTLDERFIRILKI---------FKWGPDAEKALEVLKLKVDHRLV 65

Query: 123 AEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRA------------ 170
            EVLK++    +  +FF WAGK++ ++H+  +Y  L  CL    LF              
Sbjct: 66  REVLKIDVEINVKIQFFKWAGKRRNFEHDLTTYMPLIRCLDDCGLFGEMWKMIQEMVRSP 125

Query: 171 ------AD--QVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
                 AD  +V +++     + + L +  +++   CKP    Y +MI +L  E + +  
Sbjct: 126 TCVIGPADLSEVVKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKI 185

Query: 223 LRVWEEM-KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
             ++ EM  +     D M Y  L+    K GR      LF EMK NG+     IY  L+ 
Sbjct: 186 HELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLA 245

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
                G   KA  L++++ D G    +  Y  +I GL +  + + AY +F   ++D   P
Sbjct: 246 IYFKSGD-EKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKP 304

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF------------------SVAADLEKF 383
           D   +N L+    + GR+++  KL  QM  LK                   + A++   +
Sbjct: 305 DVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASW 364

Query: 384 FEFLVG------------------KEERIMMALDVFEELKGKGYSSVP-IYNILMGALLE 424
           FE +                    K  R+  AL + EE+  KG+   P  Y  L+ AL +
Sbjct: 365 FEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGK 424

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
               + A  LF +++      ++  +++ I+   + G   EA +  N++ ++   P V A
Sbjct: 425 AKRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYA 484

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN L  GL + G I+ A   +R    N  + P    + + +  + R+G  E+  E+  +M
Sbjct: 485 YNALMSGLVRAGMIEEAFSALRTMEENGCT-PDLNSHNIILNGLARTGRPEQATEMFMKM 543

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
                 P+ V  + I+  + + G  EEA K+   +  R    E + I Y  IL
Sbjct: 544 KDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGF--EYDHITYSSIL 594



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/324 (20%), Positives = 146/324 (45%), Gaps = 8/324 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GR+ +   +   M ++ CKPDV     +I +      L+  L+++++M+      +V+ 
Sbjct: 284 SGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVT 343

Query: 241 YVTLIMGLCKG-GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y T+I  L +           F +MK NG+      Y +LI+G     +V KA  LL+++
Sbjct: 344 YNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEM 403

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV-CCAEMGR 358
            + G+      Y S+I  L + K+++ A +LF + ++++     + +  +++    + GR
Sbjct: 404 DEKGFPPCPAAYCSLINALGKAKRYEAANELF-LELKENCGRSSARIYAVMIKNLGKCGR 462

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIY 415
                 L  +M+K+      D+  +   + G  +   I  A      ++  G +  +  +
Sbjct: 463 PSEAVDLFNEMKKI--GCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSH 520

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           NI++  L   G  ++A  +F KM+   ++ +++S++  +     SG   EA +   ++  
Sbjct: 521 NIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGS 580

Query: 476 MSQVPSVAAYNCLTKGLCKIGEID 499
                    Y+ + + + K+ E D
Sbjct: 581 RGFEYDHITYSSILEAVGKVDEDD 604



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 76/145 (52%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR +E +++  +M++  C PDV+AY A++  L     ++        M+++    D+ ++
Sbjct: 461 GRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSH 520

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++ GL + GR  +  E+F +MK++ I  D   Y  ++  L   G   +A  L++++  
Sbjct: 521 NIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGS 580

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDK 326
            G+  D   Y+SI+  + +V + D+
Sbjct: 581 RGFEYDHITYSSILEAVGKVDEDDE 605


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 221/474 (46%), Gaps = 26/474 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           ++ G+  N  SYN L + L ++   + A +V   M S+G                    I
Sbjct: 186 REAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNI 245

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
             ++ +LE+M     +P+++ YT  IRVL  +  +D   R+ + M  D    DV+ Y  L
Sbjct: 246 KTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVL 305

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC   ++     LF +MK +    D+  Y  L++     G + K   +  ++   GY
Sbjct: 306 IDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGY 365

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  +  ++  LC+  + ++A+ L +   +  + P+  T N L+       R+D+   
Sbjct: 366 APDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALD 425

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
           L + ME L     A          GK      AL+ FE++K +G + ++   N  + +L 
Sbjct: 426 LFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLA 485

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           E+G + +A  +F +++   L  +S+++++ ++C+ + G + EA +  +++ ++   P V 
Sbjct: 486 EMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVI 545

Query: 484 AYNCLTKGLCKIGEIDAA-MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             N L   L K G ++ A  M  R    N+A  PT   Y + +  + + G+ +K +++  
Sbjct: 546 VINSLIDTLYKAGRVEEAWQMFCRMEEMNLA--PTVVTYNILLAGLGKEGQIQKAVQLFE 603

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF---TNLRERKLLTEANTIVY 593
            M   GC PN +  + ++  +CK+  ++ A K+F   T +  R  +   NTI++
Sbjct: 604 SMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIH 657



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 195/409 (47%), Gaps = 8/409 (1%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           ++   G+I E   I+++M  + C PDV  YT +I  L   R LD  + ++ +MK    + 
Sbjct: 273 VLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKP 332

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D + YVTL+      G + +  +++ EM+ +G   D   + +L+  L   G++ +A DLL
Sbjct: 333 DKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLL 392

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             +   G   +L  YN++I GL R  + D A  LF       + P   T    ++     
Sbjct: 393 DTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEP---TAYTYILLIDYH 449

Query: 357 GRMDNFFKLLAQMEKLKF-SVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGYSSVP 413
           G+  +  K L   EK+K   +A ++      L    E  R+  A  +F ELK  G +   
Sbjct: 450 GKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDS 509

Query: 414 I-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
           + YN++M    ++G+V +A+ L  +M  +  E + +  +  I    ++G + EA +   +
Sbjct: 510 VTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCR 569

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           + EM+  P+V  YN L  GL K G+I  A+ L     G+  S P    +   +  +C++ 
Sbjct: 570 MEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCS-PNTITFNTLLDCLCKND 628

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           E +  +++  +MT   C P+ +  + II G  K   ++ A  +F  +++
Sbjct: 629 EVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKK 677



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 195/428 (45%), Gaps = 11/428 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + +    LEKMR      + ++Y  +I  L         L V+  M  + ++  +  
Sbjct: 172 RGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKT 231

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  L++   K   +     L  EM+  G+  +   Y + I  L  +GK+ +A  ++K + 
Sbjct: 232 FSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMD 291

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D G   D+  Y  +I  LC  ++ D A  LF         PD  T   LL   ++ G +D
Sbjct: 292 DDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLD 351

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKG-YSSVPIYN 416
              K+  +ME   +  A D+   F  LV    K  RI  A D+ + ++ +G   ++  YN
Sbjct: 352 KVEKIWTEMEADGY--APDVVT-FTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYN 408

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  LL    +  AL LF  M  L +E  + ++ + I  H +SG   +A E   K+   
Sbjct: 409 TLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKAR 468

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P++ A N     L ++G +  A  +  + L +    P    Y + +    + G+ ++
Sbjct: 469 GIAPNIVACNASLYSLAEMGRLGEAKAMFNE-LKSSGLAPDSVTYNMMMKCYSKVGQVDE 527

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
            I++L+EM++  C P+ ++ +++I  + K G +EEA ++F  + E  L   A T+V   I
Sbjct: 528 AIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNL---APTVVTYNI 584

Query: 597 LIEHMKKK 604
           L+  + K+
Sbjct: 585 LLAGLGKE 592



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 106/447 (23%), Positives = 194/447 (43%), Gaps = 37/447 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K +G   N  + NA  Y L+                  GR+ E   +  +++ +   PD 
Sbjct: 466 KARGIAPNIVACNASLYSLAE----------------MGRLGEAKAMFNELKSSGLAPDS 509

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  M++  +    +D  +++  EM K   E DV+   +LI  L K GRV    ++F  
Sbjct: 510 VTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCR 569

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M+E  +      Y +L+ GL  EG++ KA  L + +   G   +   +N+++  LC+  +
Sbjct: 570 MEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDE 629

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            D A K+F      +  PD  T N ++    +  ++ N   L  QM+KL   +  D    
Sbjct: 630 VDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKL---LRPDHVTL 686

Query: 384 FEFLVG--KEERIMMALDVFEELKGKGYSSV--PIYNILMGALLEIGEVKKALYLFGKM- 438
              L G  K  +I  A  + E+   +  S++    +  +MG +L     +KA+ LFG+  
Sbjct: 687 CTLLPGVIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAI-LFGERL 745

Query: 439 --RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII----EMSQVPSVAAYNCLTKGL 492
             R +  + + L   I + C  +   +       N  +    E+   P++  YN L  G 
Sbjct: 746 VCRAICKDDSVLIPIIKVLCKHKKTSV-----ARNVFVKFTKELGVKPTLKVYNLLIDGF 800

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
            ++  ++ A  L  + + +    P  F Y   I    +SG+  ++ ++ +EM   GC PN
Sbjct: 801 LEVHNVEVAWNLFEE-MKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPN 859

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNL 579
            +  + +IS + K   L++A  ++ NL
Sbjct: 860 TITYNMVISNLVKSNRLDKAMDLYYNL 886



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 151/359 (42%), Gaps = 4/359 (1%)

Query: 196  RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMAYVTLIMGLCKGGRV 254
            R +CK D      +I+VL   +       V+ +  K+L V+  +  Y  LI G  +   V
Sbjct: 748  RAICKDDS-VLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNV 806

Query: 255  VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
                 LF EMK  G   D   Y  LI+     GK+ +  DL  +++  G + +   YN +
Sbjct: 807  EVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMV 866

Query: 315  IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
            I  L +  + DKA  L+   V  D +P   T  PL+    + GR+D+  ++   M     
Sbjct: 867  ISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGC 926

Query: 375  SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALY 433
               + +        GK   +  A + F+ +  +G    +  Y IL+  L   G V  AL+
Sbjct: 927  RPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALH 986

Query: 434  LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
             F K++   L+ + +++++ I     S    EA    +++     VP +  YN L   L 
Sbjct: 987  YFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLG 1046

Query: 494  KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
             +G I+ A  +  + L  +   P  F Y   I     SG +E    +  +M   GC PN
Sbjct: 1047 IVGMIEEAGKIYEE-LQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPN 1104



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 109/486 (22%), Positives = 208/486 (42%), Gaps = 45/486 (9%)

Query: 147  GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
            G   N  ++N L  CL +N+    A                L++  KM    C+PDV  +
Sbjct: 609  GCSPNTITFNTLLDCLCKNDEVDLA----------------LKMFYKMTTMNCRPDVLTF 652

Query: 207  TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG----HELFR 262
              +I     +  +   + ++ +MKK L+  D +   TL+ G+ K G++        + F 
Sbjct: 653  NTIIHGFIKQNQIKNAIWLFHQMKK-LLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFY 711

Query: 263  EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            ++  N   IDR+ +  ++ G++ E    KA    + LV      D  +   II  LC+ K
Sbjct: 712  QVGSN---IDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCKHK 768

Query: 323  QFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            +   A  +F + T +  + P     N L+    E+  ++  + L  +M+      A D  
Sbjct: 769  KTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSA--GCAPDTF 826

Query: 382  KFFEFL--VGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKM 438
             +   +   GK  +I    D+++E+  +G     I YN+++  L++   + KA+ L+  +
Sbjct: 827  TYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNL 886

Query: 439  RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
               +      +F   I   ++SG + +A E  + ++     P+ A YN L  G  K+G +
Sbjct: 887  VSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHV 946

Query: 499  DAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            D A    +     V  G  P    Y + +  +C +G  +  +    ++ Q G  P+ V  
Sbjct: 947  DTACEFFKRM---VKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAY 1003

Query: 557  SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI--------LIEHMKKKTADL 608
            + +I+G+ +    EEA  +F  ++ R ++ +  T  Y+ +        +IE   K   +L
Sbjct: 1004 NLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYT--YNSLILNLGIVGMIEEAGKIYEEL 1061

Query: 609  VLSGLK 614
               GLK
Sbjct: 1062 QFIGLK 1067



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 146/352 (41%), Gaps = 24/352 (6%)

Query: 122  VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSRN-----NLF---RAA 171
            + +VL      ++A   F    K+ G K     YN L   +    N     NLF   ++A
Sbjct: 760  IIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSA 819

Query: 172  DQVPE------LMDSQGR---IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
               P+      L+D+ G+   I E+ ++ ++M    CKP+   Y  +I  L     LD  
Sbjct: 820  GCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKA 879

Query: 223  LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
            + ++  +           +  LI GL K GR+   HE+F  M   G   + AIY +L+ G
Sbjct: 880  MDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNG 939

Query: 283  LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
                G V  AC+  K +V  G R DL  Y  ++  LC   + D A   FE   Q  L PD
Sbjct: 940  YGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPD 999

Query: 343  FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDV 400
                N ++       R +    L  +M+     +  DL  +   +  +G    I  A  +
Sbjct: 1000 LVAYNLMINGLGRSQRTEEALSLFHEMQNR--GIVPDLYTYNSLILNLGIVGMIEEAGKI 1057

Query: 401  FEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
            +EEL+  G   +V  YN L+      G  + A  ++ KM     + N+ +F+
Sbjct: 1058 YEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFA 1109



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 136/277 (49%), Gaps = 7/277 (2%)

Query: 190  ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
            + E+M+   C PD F Y ++I        ++    +++EM     + + + Y  +I  L 
Sbjct: 812  LFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLV 871

Query: 250  KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
            K  R+ +  +L+  +           +G LI+GL+  G++  A ++   +V  G R +  
Sbjct: 872  KSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSA 931

Query: 310  IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            IYN ++ G  ++   D A + F+  V++ + PD  +   L+      GR+D+    L   
Sbjct: 932  IYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDD---ALHYF 988

Query: 370  EKLKFS-VAADLEKFFEFL--VGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEI 425
            EKLK + +  DL  +   +  +G+ +R   AL +F E++ +G    +  YN L+  L  +
Sbjct: 989  EKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIV 1048

Query: 426  GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
            G +++A  ++ +++ + L+ N  +++  I+ +  SG+
Sbjct: 1049 GMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGN 1085


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 132/547 (24%), Positives = 239/547 (43%), Gaps = 29/547 (5%)

Query: 103 WGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           WG  V   L++L     P+LV  VL+   +   A  +F WA +     H   +YN+L   
Sbjct: 80  WGSSVENRLAELDLNPNPELVIGVLRRLKDVNNAVNYFRWAERLTDRAHCREAYNSLLMV 139

Query: 162 LSRNNLFRAADQVPELMDSQG-------------------RIAEMLEILEKMRRNLCKPD 202
           ++R   F   +Q+ E M   G                   ++ E    ++ MR+   +P 
Sbjct: 140 MARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPA 199

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
             AYT +I  L+  R+ D  L ++++M++     +V  + TLI    + GRV     L  
Sbjct: 200 FSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLD 259

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EMK N +  D  +Y V I+     GKV  A     ++  +G   D   Y S+IG LC+  
Sbjct: 260 EMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKAD 319

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           + ++A +LFE   Q+   P     N +++     G+ ++ + LL +  +     +     
Sbjct: 320 RLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYN 379

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                +G++ ++  AL  FEE+K     ++  YNI++  L + G+++ AL +   M+   
Sbjct: 380 CILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAG 439

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           L  N ++ +I +    ++  + +AC     +   +  P    Y  L +GL + G +D A 
Sbjct: 440 LFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAY 499

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            L    L +    P    Y   I +  + G  E   ++ NEM + GC P+ ++ +  +  
Sbjct: 500 KLYEQML-DANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDC 558

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKL 622
           + K G +E+ R +F  ++    + +A +     ILI  + K  A       + F     +
Sbjct: 559 VFKAGEIEKGRALFQEIKNLGFIPDARSYT---ILIHGLVK--AGFAHEAYELF---YTM 610

Query: 623 KAKGCKL 629
           K +GC L
Sbjct: 611 KEQGCVL 617



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/475 (22%), Positives = 206/475 (43%), Gaps = 26/475 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAA---------DQVPEL---------MDSQGRIA 185
           ++KG   +  SYN +  CL R      A         D +P L         +   G++ 
Sbjct: 367 RRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLE 426

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
             L + + M+     P+V     M+  L   + LD    ++E +       D + Y +LI
Sbjct: 427 TALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLI 486

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GL + GRV   ++L+ +M +   + +  +Y  LI      G+      +  +++  G  
Sbjct: 487 EGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCS 546

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            DL + N+ +  + +  + +K   LF+        PD  +   L+    + G     ++L
Sbjct: 547 PDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYEL 606

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGAL 422
              M++       D   +   + G  K  ++  A  + EE+K KG+  +V  Y  ++  L
Sbjct: 607 FYTMKEQ--GCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGL 664

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            +I  + +A  LF + +   +E+N + +S  I    + G I EA     ++++    P+V
Sbjct: 665 AKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNV 724

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             +NCL   L K  EI  A++  +  + ++   P    Y++ I  +C+  +  K      
Sbjct: 725 YTWNCLLDALVKAEEISEALVCFQS-MKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQ 783

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           EM ++G  PN    + +ISG+ K G + EA  +F   +E+  +  A++ +Y+ I+
Sbjct: 784 EMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGV--ADSAIYNAII 836



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 189/443 (42%), Gaps = 25/443 (5%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           +G  H     +A+ YC            + E +   GR+ E  ++ E+M      P+   
Sbjct: 468 EGLDHKTCRPDAVTYC-----------SLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVV 516

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           YT++IR        +   +++ EM +     D++   T +  + K G + +G  LF+E+K
Sbjct: 517 YTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIK 576

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
             G + D   Y +LI GLV  G   +A +L   + + G   D   YN++I G C+  + +
Sbjct: 577 NLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVN 636

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME----KLKFSVAADLE 381
           KAY+L E        P   T   ++   A++ R+D  + L  + +    +L   + + L 
Sbjct: 637 KAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLI 696

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
             F    GK  RI  A  + EEL  KG + +V  +N L+ AL++  E+ +AL  F  M+ 
Sbjct: 697 DGF----GKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKD 752

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
           L    N +++SI I    +     +A     ++ +    P+V  Y  +  GL K G I  
Sbjct: 753 LKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVE 812

Query: 501 AMMLVRDCL--GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           A  L       G VA       Y   I  +  +  A     +  E   +GC      C  
Sbjct: 813 ADTLFEKFKEKGGVADSAI---YNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVV 869

Query: 559 IISGMCKHGTLEEARKVFTNLRE 581
           ++  + K   +E+A  V   LRE
Sbjct: 870 LLDSLHKAECIEQAAIVGAVLRE 892



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 183/416 (43%), Gaps = 3/416 (0%)

Query: 166 NLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV 225
           N+      V  L  +Q R+ +   I E +    C+PD   Y ++I  L     +D   ++
Sbjct: 443 NVITVNIMVDRLCKAQ-RLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKL 501

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285
           +E+M       + + Y +LI    K GR   GH+++ EM   G   D  +    ++ +  
Sbjct: 502 YEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFK 561

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
            G++ K   L +++ + G+  D   Y  +I GL +     +AY+LF    +     D   
Sbjct: 562 AGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRA 621

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELK 405
            N ++    + G+++  ++LL +M+                 + K +R+  A  +FEE K
Sbjct: 622 YNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK 681

Query: 406 GKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
            KG   +V IY+ L+    ++G + +A  +  ++    L  N  +++  +   V++ +I 
Sbjct: 682 SKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEIS 741

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
           EA  C   + ++   P+   Y+ L  GLCKI + + A +  ++ +      P  F Y   
Sbjct: 742 EALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQE-MQKQGFKPNVFTYTTM 800

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           I  + ++G   +   +  +  ++G   +  I +AII G+       +A ++F   R
Sbjct: 801 ISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEAR 856


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 132/520 (25%), Positives = 220/520 (42%), Gaps = 60/520 (11%)

Query: 101 FQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALA 159
           F+WGP     L  L  RV   LV EV+K +    +  +FF WA K++ Y+H+ ++Y AL 
Sbjct: 71  FKWGPDAEKALEVLMLRVDHWLVREVMKTDIGVNVKMQFFRWAAKRRNYEHDTSTYMALI 130

Query: 160 YCLS----------------RNNLFRAA----DQVPELMDSQGRIAEMLEILEKMRRNLC 199
            CL                 RN +         +V  ++ +   +++ + I  +++   C
Sbjct: 131 RCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKC 190

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD-LVEADVMAYVTLIMGLCKGGRVVRGH 258
           +P   AY +MI +L  E        ++ EM  +     D M Y  LI   CK GR     
Sbjct: 191 QPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAT 250

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           +L  EMKENG+     IY +LI        V  A  L +++     R D+  Y  +I GL
Sbjct: 251 QLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGL 310

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
            +  + D+AY  F    ++   PD   +N ++    + GR+D+  KL  +M  L      
Sbjct: 311 GKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTL------ 364

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEI-GEVKKALYLFGK 437
                                       +   SV  YN ++ AL E      +    F +
Sbjct: 365 ----------------------------RCIPSVVTYNTIIKALFESKSRASEVPSWFER 396

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M+   +  +S ++SI I    ++  + +A     ++ E    P  AAY  L   L K   
Sbjct: 397 MKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKR 456

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
            D A  L ++   N  S      YA+ I H+ ++G  +  I + +EM + GC P+    +
Sbjct: 457 YDLACELFQELKENCGSSSARV-YAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYN 515

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           A++SG+ + G L+EA      ++E   + + N+  Y+ IL
Sbjct: 516 ALMSGLARTGMLDEALSTMRRMQEHGCIPDINS--YNIIL 553



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 164/368 (44%), Gaps = 20/368 (5%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L + E+MR   C+PDVF YT +IR L     +D     + EM+++    D +    +I  
Sbjct: 285 LSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINF 344

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV-GEGKVGKACDLLKDLVDSGYRA 306
           L K GR+    +LF+EM     +     Y  +I+ L   + +  +     + + +SG   
Sbjct: 345 LGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISP 404

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
               Y+ +I G C+  + +KA  L E   +    P  +    L+    +  R D   +L 
Sbjct: 405 SSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELF 464

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
            ++++   S +A +       +GK  R+  A+++F+E+   G +  V  YN LM  L   
Sbjct: 465 QELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLART 524

Query: 426 GEVKKALYLFGKMR--GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           G + +AL    +M+  G   ++N  S++I +    ++G    A E  + + + +  P V 
Sbjct: 525 GMLDEALSTMRRMQEHGCIPDIN--SYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVV 582

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           +YN +   L   G  + A  L+ +   LG        F+Y L    +  S   E I +V 
Sbjct: 583 SYNTVLGALSHAGMFEEAAKLMEEMNTLG--------FEYDL----ITYSSILEAIGKVD 630

Query: 542 NEMTQEGC 549
           +E T +GC
Sbjct: 631 HEYTGQGC 638



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 117/278 (42%), Gaps = 34/278 (12%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           +  L +S+ R +E+    E+M+ +   P  F Y+ +I        ++  + + EEM +  
Sbjct: 377 IKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKG 436

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
                 AY +LI  L K  R     ELF+E+KEN       +Y V+I+ L   G++  A 
Sbjct: 437 FPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAI 496

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           ++  ++   G   D+  YN+++ GL R    D+A        +    PD ++ N +L   
Sbjct: 497 NMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGL 556

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
           A+ G      ++L+ M+  + +V  D                                V 
Sbjct: 557 AKTGGPHRAMEMLSNMK--QSTVRPD--------------------------------VV 582

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
            YN ++GAL   G  ++A  L  +M  L  E + +++S
Sbjct: 583 SYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYS 620



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 11/175 (6%)

Query: 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTA 208
           K N  S +A  Y +   +L +A           GR+ + + + ++M +  C PDV+AY A
Sbjct: 468 KENCGSSSARVYAVMIKHLGKA-----------GRLDDAINMFDEMNKLGCAPDVYAYNA 516

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           ++  LA    LD  L     M++     D+ +Y  ++ GL K G   R  E+   MK++ 
Sbjct: 517 LMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQST 576

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +  D   Y  ++  L   G   +A  L++++   G+  DL  Y+SI+  + +V  
Sbjct: 577 VRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAIGKVDH 631


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 126/502 (25%), Positives = 226/502 (45%), Gaps = 24/502 (4%)

Query: 101  FQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALA 159
            F+WGP     L  L  RV   LV EV+K +    +  +FF WA K++ Y+H+ ++Y AL 
Sbjct: 1061 FKWGPDAEKALEVLMLRVDHWLVREVMKTDVGVNVKMQFFRWAAKRRNYEHDTSTYMALI 1120

Query: 160  YCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRN-LCKPDVFAYTAMIRVLAAERN 218
            +CL             E+++  G   EM +++++M RN +C       + ++R+L   + 
Sbjct: 1121 HCL-------------EVVEQYG---EMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKM 1164

Query: 219  LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG-ILIDRAIYG 277
            +   + ++ ++K    +    AY ++I+ L   G+  + H+L+ EM   G    D   Y 
Sbjct: 1165 VRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYS 1224

Query: 278  VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
             LI      G+   A  LL ++ + G +    IY  +I    +      A  LFE     
Sbjct: 1225 ALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQ 1284

Query: 338  DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA 397
               PD  T   L+    + GR+D  +    +M++                +GK  R+  A
Sbjct: 1285 YCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDA 1344

Query: 398  LDVFEELKG-KGYSSVPIYNILMGALLEI-GEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
            + +F+E++  +   SV  YN ++ AL E      +    F +M+   +  +S ++SI I 
Sbjct: 1345 MKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILID 1404

Query: 456  CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
               ++  + +A     ++ E    P  AAY  L   L K    D A  L ++   N  S 
Sbjct: 1405 GFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSS 1464

Query: 516  PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
                 YA+ I H+ ++G  +  I + +EM + GC P+    +A++SG+ + G L+EA   
Sbjct: 1465 SARV-YAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALST 1523

Query: 576  FTNLRERKLLTEANTIVYDEIL 597
               ++E   + + N+  Y+ IL
Sbjct: 1524 MRRMQEHGCIPDINS--YNIIL 1543



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 108/492 (21%), Positives = 205/492 (41%), Gaps = 36/492 (7%)

Query: 117  VTPDLVAEVLKVENNPTLASK--FFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
            VTP  +++V+++  N  +  +     +  K +  +    +YN++   L     +    Q+
Sbjct: 1147 VTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQL 1206

Query: 175  PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
               M ++G                C PD   Y+A+I         D+ +++  EMK+  +
Sbjct: 1207 YNEMSTEGH---------------CFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGM 1251

Query: 235  EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
            +     Y  LI    K         LF EM+      D   Y  LI GL   G++ +A  
Sbjct: 1252 QPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYH 1311

Query: 295  LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
               ++   G R D    N++I  L +  + D A KLF+        P   T N ++    
Sbjct: 1312 FFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALF 1371

Query: 355  EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSS 411
            E        ++ +  E++K S  +     +  L+    K  R+  A+ + EE+  KG+  
Sbjct: 1372 E--SKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 1429

Query: 412  VP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
             P  Y  L+ AL +      A  LF +++      ++  +++ I+   ++G + +A    
Sbjct: 1430 CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMF 1489

Query: 471  NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR-----DCLGNVASGPTEFKYALTI 525
            +++ ++   P V AYN L  GL + G +D A+  +R      C+ ++ S      Y + +
Sbjct: 1490 DEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINS------YNIIL 1543

Query: 526  LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
              + ++G   + +E+L+ M Q    P+ V  + ++  +   G  EEA K+   +    L 
Sbjct: 1544 NGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEM--NTLG 1601

Query: 586  TEANTIVYDEIL 597
             E + I Y  IL
Sbjct: 1602 FEYDLITYSSIL 1613



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 11/175 (6%)

Query: 149  KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTA 208
            K N  S +A  Y +   +L +A           GR+ + + + ++M +  C PDV+AY A
Sbjct: 1458 KENCGSSSARVYAVMIKHLGKA-----------GRLDDAINMFDEMNKLGCAPDVYAYNA 1506

Query: 209  MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
            ++  LA    LD  L     M++     D+ +Y  ++ GL K G   R  E+   MK++ 
Sbjct: 1507 LMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQST 1566

Query: 269  ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
            +  D   Y  ++  L   G   +A  L+K++   G+  DL  Y+SI+  + +V  
Sbjct: 1567 VRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKVDH 1621


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 160/692 (23%), Positives = 267/692 (38%), Gaps = 127/692 (18%)

Query: 37  QSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAF 96
             L +PN ++    +P       D  +L N    S             +S I++ +   F
Sbjct: 30  HGLHHPNDSTFSPSTPTPRDLSQDYAFLRNTLINSTSPQSTPSSGDDAISTISKALKTGF 89

Query: 97  RKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYN 156
                Q+  Q   +L+        LV EV+    NP L  KFF WAG+Q GY H    ++
Sbjct: 90  NIETHQFFRQFRNQLND------SLVVEVMNNVKNPELCVKFFLWAGRQIGYSHTPQVFD 143

Query: 157 ALAYCLSRNNLFRAADQVPE--LMDSQGRIAEMLE-ILEKMRRNLC-------------- 199
            L   L  N    A D+VP   LM+ +    E+L  +L  + R  C              
Sbjct: 144 KLLDLLGCN--VNADDRVPLKFLMEIKDDDHELLRRLLNFLVRKCCRNGWWNMALEELGR 201

Query: 200 ------KPDVFAYTAMIRVLAAERNLDACLRVWEEMKK---------------------- 231
                 KP    Y A+I+V      LD    V  EM                        
Sbjct: 202 LKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGK 261

Query: 232 -----DLVEA------DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280
                DL++       D + Y  ++ GLC+        ++   M+ +  + +   Y +L+
Sbjct: 262 CREAFDLIDEAEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILL 321

Query: 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
            G + +G++G+   +L  ++  G   +  I+NS+I   C+ + +  AYKLF+  ++    
Sbjct: 322 SGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQ 381

Query: 341 PDFSTVNPLL--VCCAE---------------------------------------MGRM 359
           P +   N  +  VC  E                                        G+ 
Sbjct: 382 PGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKF 441

Query: 360 DNFFKLLAQMEKLKFSVAAD--LEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYN 416
           D  FK++ +M    F V  D    K   FL     ++  A  +FEE+K  G   SV  Y 
Sbjct: 442 DQAFKIICEMMGKGF-VPDDSTYSKVIGFLC-DASKVEKAFSLFEEMKRNGIVPSVYTYT 499

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+ +  + G +++A   F +M       N ++++  I  ++++  +  A E    ++  
Sbjct: 500 ILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLE 559

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS---------------GPTEFKY 521
              P+V  Y  L  G CK G+I+ A  +     G++ S               GP    Y
Sbjct: 560 GCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITY 619

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              +  +C++   ++  E+L+ M   GC PN+++  A+I G CK G L++A++VFT + E
Sbjct: 620 GALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSE 679

Query: 582 RKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
           R      N   Y   +    K    DLVL  L
Sbjct: 680 RGY--SPNLYTYSSFIDCLFKDNRLDLVLKVL 709



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 176/403 (43%), Gaps = 25/403 (6%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  +  +I+ +M      PD   Y+ +I  L     ++    ++EEMK++ +   V  Y
Sbjct: 439 GKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTY 498

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI   CK G + +  + F EM   G   +   Y  LI   +   ++  A +L + ++ 
Sbjct: 499 TILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLL 558

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + ++  Y ++I G C+  Q +KA +++     D                 E   MD 
Sbjct: 559 EGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGD----------------IESSDMDK 602

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNIL 418
           +FKL             ++  +   + G  K  R+  A ++ + +   G     I Y+ +
Sbjct: 603 YFKL-----DHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAV 657

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    +IG+++ A  +F KM       N  ++S  I C  +   +    +  +K++E S 
Sbjct: 658 IDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSC 717

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P+V  Y  +  GLCKIG+ D A  L+   +      P    Y   I    +SG+ E+ +
Sbjct: 718 TPNVVIYTEMVDGLCKIGKTDEAYKLMLK-MEEKGCNPNVVTYTAMIDGFGKSGKIEQCL 776

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           E+  +M  +GC PN +    +I+  C +G L+EA K+   +++
Sbjct: 777 ELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQ 819



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 194/455 (42%), Gaps = 54/455 (11%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            KG   N  +Y AL +   +      AD++ E+M  +G                CKP+V 
Sbjct: 523 HKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEG----------------CKPNVV 566

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD----------------VMAYVTLIMGL 248
            YTA+I        ++   +++  M+ D+  +D                V+ Y  L+ GL
Sbjct: 567 TYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGL 626

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           CK  RV   HEL   M  +G   ++ +Y  +I+G    GK+  A ++   + + GY  +L
Sbjct: 627 CKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNL 686

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             Y+S I  L +  + D   K+    +++   P+      ++    ++G+ D  +KL+ +
Sbjct: 687 YTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLK 746

Query: 369 MEKLK-----FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGAL 422
           ME+        +  A ++ F     GK  +I   L++F ++  KG + +   Y +L+   
Sbjct: 747 MEEKGCNPNVVTYTAMIDGF-----GKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHC 801

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
              G + +A  L  +M+      + LS    I+    S + + +    +++ E   VP  
Sbjct: 802 CSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGF--SQEFITSIGLLDELSENESVPVD 859

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT-----EFKYALTILHVCRSGEAEKI 537
           + Y  L     K G ++ A+    D L  ++S P+     ++ YA  I ++  + + +K 
Sbjct: 860 SLYRILIDNYIKAGRLEVAL----DLLEEISSSPSHAVSNKYLYASLIENLSHASKVDKA 915

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           +E+   M  +   P   I   +I G+ K    +EA
Sbjct: 916 LELYASMISKNVVPELSILVHLIKGLIKVDKWQEA 950



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 108/472 (22%), Positives = 194/472 (41%), Gaps = 65/472 (13%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E ++IL +MR + C P+V  Y  ++     +  L  C R+   M  +    +   + +LI
Sbjct: 297 EAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLI 356

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              CK       ++LF++M + G      +Y + I G V   +   + D+L DLV+  Y 
Sbjct: 357 HAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFI-GSVCSNEEQPSSDIL-DLVEKAYS 414

Query: 306 A--DLGIY------NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
              DLG+       ++    LC   +FD+A+K+    +     PD ST + ++    +  
Sbjct: 415 EMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDAS 474

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYN 416
           +++  F L  +M++     +            K   I  A   F+E+  KG + +V  Y 
Sbjct: 475 KVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYT 534

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI--- 473
            L+ A L+  ++  A  LF  M     + N ++++  I  H ++G I +AC+ + ++   
Sbjct: 535 ALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGD 594

Query: 474 IEMSQV-------------PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
           IE S +             P+V  Y  L  GLCK   +  A  L+   L +    P +  
Sbjct: 595 IESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAH-GCEPNQIV 653

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEG-------------------------------- 548
           Y   I   C+ G+ +   EV  +M++ G                                
Sbjct: 654 YDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKML 713

Query: 549 ---CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
              C PN VI + ++ G+CK G  +EA K+   + E+      N + Y  ++
Sbjct: 714 ENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKG--CNPNVVTYTAMI 763



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 165/372 (44%), Gaps = 18/372 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
            R+ E  E+L+ M  + C+P+   Y A+I        L     V+ +M +     ++  Y
Sbjct: 630 NRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTY 689

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            + I  L K  R+    ++  +M EN    +  IY  +++GL   GK  +A  L+  + +
Sbjct: 690 SSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEE 749

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++  Y ++I G  +  + ++  +LF        AP+F T   L+  C   G +D 
Sbjct: 750 KGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDE 809

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI---YNIL 418
            +KLL +M++  +     +    + + G  +  + ++ + +EL      SVP+   Y IL
Sbjct: 810 AYKLLDEMKQTYW--PKHILSHRKIIEGFSQEFITSIGLLDELSEN--ESVPVDSLYRIL 865

Query: 419 MGALLEIGEVKKALYLFGKMRG--LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           +   ++ G ++ AL L  ++     +   N   ++  I+    +  + +A E +  +I  
Sbjct: 866 IDNYIKAGRLEVALDLLEEISSSPSHAVSNKYLYASLIENLSHASKVDKALELYASMISK 925

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-------LGNVASGPTE--FKYALTILH 527
           + VP ++    L KGL K+ +   A+ L           L   A+G TE   K  +  + 
Sbjct: 926 NVVPELSILVHLIKGLIKVDKWQEALQLSDSICQMDIHWLQEKATGRTEEMVKLVIAAMV 985

Query: 528 VCRSGEAEKIIE 539
              +G +E+I+E
Sbjct: 986 EAETGVSEEILE 997


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 132/547 (24%), Positives = 239/547 (43%), Gaps = 29/547 (5%)

Query: 103 WGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           WG  V   L++L     P+LV  VL+   +   A  +F WA +     H   +YN+L   
Sbjct: 80  WGSSVENRLAELDLNPNPELVIGVLRRLKDVNNAVNYFRWAERLTDRAHCREAYNSLLMV 139

Query: 162 LSRNNLFRAADQVPELMDSQG-------------------RIAEMLEILEKMRRNLCKPD 202
           ++R   F   +Q+ E M   G                   ++ E    ++ MR+   +P 
Sbjct: 140 MARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPA 199

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
             AYT +I  L+  R+ D  L ++++M++     +V  + TLI    + GRV     L  
Sbjct: 200 FSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLD 259

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EMK N +  D  +Y V I+     GKV  A     ++  +G   D   Y S+IG LC+  
Sbjct: 260 EMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKAD 319

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           + ++A +LFE   Q+   P     N +++     G+ ++ + LL +  +     +     
Sbjct: 320 RLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYN 379

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                +G++ ++  AL  FEE+K     ++  YNI++  L + G+++ AL +   M+   
Sbjct: 380 CILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAG 439

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           L  N ++ +I +    ++  + +AC     +   +  P    Y  L +GL + G +D A 
Sbjct: 440 LFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAY 499

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            L    L +    P    Y   I +  + G  E   ++ NEM + GC P+ ++ +  +  
Sbjct: 500 KLYEQML-DANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDC 558

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKL 622
           + K G +E+ R +F  ++    + +A +     ILI  + K  A       + F     +
Sbjct: 559 VFKAGEIEKGRALFQEIKNLGFIPDARSYT---ILIHGLVK--AGFAHEAYELF---YTM 610

Query: 623 KAKGCKL 629
           K +GC L
Sbjct: 611 KEQGCVL 617



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/475 (22%), Positives = 206/475 (43%), Gaps = 26/475 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAA---------DQVPEL---------MDSQGRIA 185
           ++KG   +  SYN +  CL R      A         D +P L         +   G++ 
Sbjct: 367 RRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLE 426

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
             L + + M+     P+V     M+  L   + LD    ++E +       D + Y +LI
Sbjct: 427 TALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLI 486

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GL + GRV   ++L+ +M +   + +  +Y  LI      G+      +  +++  G  
Sbjct: 487 EGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCS 546

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            DL + N+ +  + +  + +K   LF+        PD  +   L+    + G     ++L
Sbjct: 547 PDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYEL 606

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGAL 422
              M++       D   +   + G  K  ++  A  + EE+K KG+  +V  Y  ++  L
Sbjct: 607 FYTMKEQ--GCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGL 664

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            +I  + +A  LF + +   +E+N + +S  I    + G I EA     ++++    P+V
Sbjct: 665 AKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNV 724

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             +NCL   L K  EI  A++  +  + ++   P    Y++ I  +C+  +  K      
Sbjct: 725 YTWNCLLDALVKAEEISEALVCFQS-MKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQ 783

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           EM ++G  PN    + +ISG+ K G + EA  +F   +E+  +  A++ +Y+ I+
Sbjct: 784 EMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGV--ADSAIYNAII 836



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 189/443 (42%), Gaps = 25/443 (5%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           +G  H     +A+ YC            + E +   GR+ E  ++ E+M      P+   
Sbjct: 468 EGLDHKTCRPDAVTYC-----------SLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVV 516

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           YT++IR        +   +++ EM +     D++   T +  + K G + +G  LF+E+K
Sbjct: 517 YTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIK 576

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
             G + D   Y +LI GLV  G   +A +L   + + G   D   YN++I G C+  + +
Sbjct: 577 NLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVN 636

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME----KLKFSVAADLE 381
           KAY+L E        P   T   ++   A++ R+D  + L  + +    +L   + + L 
Sbjct: 637 KAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLI 696

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
             F    GK  RI  A  + EEL  KG + +V  +N L+ AL++  E+ +AL  F  M+ 
Sbjct: 697 DGF----GKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKD 752

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
           L    N +++SI I    +     +A     ++ +    P+V  Y  +  GL K G I  
Sbjct: 753 LKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVE 812

Query: 501 AMMLVRDCL--GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           A  L       G VA       Y   I  +  +  A     +  E   +GC      C  
Sbjct: 813 ADTLFEKFKEKGGVADSAI---YNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVV 869

Query: 559 IISGMCKHGTLEEARKVFTNLRE 581
           ++  + K   +E+A  V   LRE
Sbjct: 870 LLDSLHKAECIEQAAIVGAVLRE 892



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 183/416 (43%), Gaps = 3/416 (0%)

Query: 166 NLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV 225
           N+      V  L  +Q R+ +   I E +    C+PD   Y ++I  L     +D   ++
Sbjct: 443 NVITVNIMVDRLCKAQ-RLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKL 501

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285
           +E+M       + + Y +LI    K GR   GH+++ EM   G   D  +    ++ +  
Sbjct: 502 YEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFK 561

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
            G++ K   L +++ + G+  D   Y  +I GL +     +AY+LF    +     D   
Sbjct: 562 AGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRA 621

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELK 405
            N ++    + G+++  ++LL +M+                 + K +R+  A  +FEE K
Sbjct: 622 YNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK 681

Query: 406 GKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
            KG   +V IY+ L+    ++G + +A  +  ++    L  N  +++  +   V++ +I 
Sbjct: 682 SKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEIS 741

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
           EA  C   + ++   P+   Y+ L  GLCKI + + A +  ++ +      P  F Y   
Sbjct: 742 EALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQE-MQKQGFKPNVFTYTTM 800

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           I  + ++G   +   +  +  ++G   +  I +AII G+       +A ++F   R
Sbjct: 801 ISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEAR 856


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 209/429 (48%), Gaps = 13/429 (3%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD     GR+ E +E+LE M++     DV  Y  +I       NLD    +++EM    
Sbjct: 220 LMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKG 279

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           + A+V+ Y  L+ GLC+ G+    + +   M E+GI  D   Y  LI+GL  +G+   A 
Sbjct: 280 ISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAM 339

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           DLL  +V+ G       YN ++ GLC+      A+K+  + ++     D  T N L+   
Sbjct: 340 DLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGL 399

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-S 410
            + G++D   KL   M   +  +  ++  F   + G  KE R+  A+ +  ++  KG   
Sbjct: 400 CDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCG 459

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACE 468
           ++  YN+L+G  L+ G++K+A+ L+ ++  L    NS ++SI I   C +   +I +   
Sbjct: 460 NLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLF 519

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
           C  +   ++  P++  YN L   LCK G ++ A  L ++ +GN    P    +   I   
Sbjct: 520 CEMRTHGLN--PALFDYNTLMASLCKEGSLEQAKSLFQE-MGNANCEPDIISFNTMIDGT 576

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
            ++G+ + + E+  +M + G  P+ +  S +I+ + K G L+EA+     +       +A
Sbjct: 577 LKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDA 636

Query: 589 NTIVYDEIL 597
             +VYD +L
Sbjct: 637 --LVYDSLL 643



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 184/400 (46%), Gaps = 6/400 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G + E + ++ +M R    PD+ +Y  +I  L   + L   + +  EM+      + + 
Sbjct: 157 NGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVT 216

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             TL+ GLCK GR+    EL   MK+ G   D  +YG LI G    G + +  +L  +++
Sbjct: 217 CTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEML 276

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G  A++  Y+ ++ GLCR+ Q+ +A  +     +  + PD  T   L+    + GR  
Sbjct: 277 GKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRAT 336

Query: 361 NFFKLLAQM-EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNIL 418
           +   LL  M EK +             L  KE  ++ A  +   +  KG  + V  YN L
Sbjct: 337 HAMDLLNLMVEKGEEPSNVTYNVLLSGLC-KEGLVIDAFKILRMMIEKGKKADVVTYNTL 395

Query: 419 MGALLEIGEVKKALYLFGKMRGLN--LEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           M  L + G+V +AL LF  M      LE N  +F++ I    + G + +A + H K+++ 
Sbjct: 396 MKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKK 455

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
               ++  YN L  G  K G+I  AM L +  L ++   P  F Y++ I   C+      
Sbjct: 456 GSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVL-DLGFVPNSFTYSILIDGFCKMRMLNI 514

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
              +  EM   G  P     + +++ +CK G+LE+A+ +F
Sbjct: 515 AKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLF 554



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 177/396 (44%), Gaps = 14/396 (3%)

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           ++  LA  RN      V+  M    V     +   LI       +   G  +   + + G
Sbjct: 80  LVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRG 139

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
             ++  I  ++++GL   G V +A  L++++       D+  YN++I GLC+ K+  +A 
Sbjct: 140 FTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAV 199

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
            L          P+  T   L+    + GRMD   +LL  M+K  F   AD+  +   + 
Sbjct: 200 GLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFD--ADVVLYGTLIS 257

Query: 389 G--KEERIMMALDVFEELKGKGYSS-VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
           G      +    ++F+E+ GKG S+ V  Y+ L+  L  +G+ K+A  +   M    +  
Sbjct: 258 GFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHP 317

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           + ++++  I    + G    A +  N ++E  + PS   YN L  GLCK G +  A  ++
Sbjct: 318 DVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKIL 377

Query: 506 RDCL--GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM-TQEGC-PPNEVICSAIIS 561
           R  +  G  A   T   Y   +  +C  G+ ++ +++ N M   E C  PN    + +I 
Sbjct: 378 RMMIEKGKKADVVT---YNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIG 434

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           G+CK G L +A K+   + ++   +  N + Y+ +L
Sbjct: 435 GLCKEGRLTKAVKIHRKMVKKG--SCGNLVTYNMLL 468



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/420 (21%), Positives = 174/420 (41%), Gaps = 57/420 (13%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           +KG + +  +YN L   L +  L   A ++  +M  +G+                K DV 
Sbjct: 347 EKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGK----------------KADVV 390

Query: 205 AYTAMIRVLAAERNLDACLRVWEEM--KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
            Y  +++ L  +  +D  L+++  M   ++ +E +V  +  LI GLCK GR+ +  ++ R
Sbjct: 391 TYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHR 450

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           +M + G   +   Y +L+ G +  GK+ +A +L K ++D G+  +   Y+ +I G C+++
Sbjct: 451 KMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMR 510

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
             + A  LF       L P     N L+    + G ++    L  +M        A+ E 
Sbjct: 511 MLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGN------ANCE- 563

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                                        +  +N ++   L+ G+ +    L  KM  + 
Sbjct: 564 ---------------------------PDIISFNTMIDGTLKAGDFQFVKELQMKMVEMG 596

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           L  ++L+FS  I    + G++ EA     +++     P    Y+ L KGL   G+    +
Sbjct: 597 LRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEII 656

Query: 503 MLVRDCLGNVASGPT-EFKYALTILH-VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
            L+       A G   + K   TIL  +C S +   ++E+L    Q       + C+ ++
Sbjct: 657 NLLHQM---AAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTSEGASISCNELL 713



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 130/308 (42%), Gaps = 4/308 (1%)

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           +A  L    +D          N ++  L R + +  A+ ++      D+ P F +++ L+
Sbjct: 57  EAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALI 116

Query: 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS 410
            C A+  +    F ++  + K  F+V   +       + +   +  A+ +  E+  K  S
Sbjct: 117 ECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVS 176

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
             +  YN L+  L +  ++K+A+ L  +M       NS++ +  +    + G + EA E 
Sbjct: 177 PDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMEL 236

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
              + +      V  Y  L  G C  G +D    L  + LG   S      Y+  +  +C
Sbjct: 237 LEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANV-VTYSCLVHGLC 295

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           R G+ ++   VLN M + G  P+ V  + +I G+CK G    A  +   + E+    E +
Sbjct: 296 RLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKG--EEPS 353

Query: 590 TIVYDEIL 597
            + Y+ +L
Sbjct: 354 NVTYNVLL 361


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 117/457 (25%), Positives = 218/457 (47%), Gaps = 32/457 (7%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PD   +T +IR L  E  +   L ++++M  +  + +V+ Y TLI GLCK G       
Sbjct: 137 QPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIR 196

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L R M++     +  ++  LI+ L  + +V +A ++  +++  G   ++  YNS+I GLC
Sbjct: 197 LLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLC 256

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           ++ ++     L    V   + PD  T+N ++    + G +     ++  M  +   V  +
Sbjct: 257 KLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMM--IHRGVEPN 314

Query: 380 LEKFFEFLVGK--EERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFG 436
           +  +   + G      + +A+ VF+ +  K   ++V  YN L+    +I  V KA+YLF 
Sbjct: 315 VVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFE 374

Query: 437 KMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           +M    L  N+++++  I   CHV  G + +A    ++++   Q+P +  Y  L+  LCK
Sbjct: 375 EMSRQELTPNTVTYNTLIHGLCHV--GRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCK 432

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILH-VCRSGEAEKIIEVLNEMTQEGCPPNE 553
              +D AM L++   G  ++   + +   TIL  +CR+GE E   ++ + ++ +G  PN 
Sbjct: 433 NRHLDKAMALLKAIEG--SNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNV 490

Query: 554 VICSAIISGMCKHGTLEEARKVFT--------------NLRERKLLTEANTIVYDEILIE 599
              + +I G+CK G L EA K+F+              NL  R  L     +   E+L E
Sbjct: 491 WTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEE 550

Query: 600 HMKK------KTADLVLSGLKFFGLESKLKAKGCKLL 630
            + +       T  L++  L   GL+  +K   CK++
Sbjct: 551 MLARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKIV 587



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 125/285 (43%), Gaps = 21/285 (7%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
            +G + N  +YNAL   +CL RN +  A                 +++ + M    C  +
Sbjct: 308 HRGVEPNVVTYNALMDGHCL-RNEVDVA-----------------VKVFDTMVHKDCVAN 349

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V +Y  +I      +++D  + ++EEM +  +  + + Y TLI GLC  GR+     LF 
Sbjct: 350 VISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFH 409

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EM   G + D   Y  L + L     + KA  LLK +  S +  D+ IY +I+ G+CR  
Sbjct: 410 EMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAG 469

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           + + A  LF       L P+  T N ++    + G +    KL ++M K   S       
Sbjct: 470 ELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYN 529

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
                  +    +  +++ EE+  +G+S  V    +L+G L + G
Sbjct: 530 LITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG 574



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 152/355 (42%), Gaps = 8/355 (2%)

Query: 107 VVTELSKLRRVTP--DLVAEVLKVENNPTLAS--KFFHWAGKQKGYKHNFASYNALAYCL 162
           ++  L K R+VT   ++ +E++    +P + +     H   K   +KH     N +    
Sbjct: 216 LIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSK 275

Query: 163 SRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
              ++F   + V + +  +G +AE  ++++ M     +P+V  Y A++        +D  
Sbjct: 276 IMPDVF-TLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVA 334

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
           ++V++ M      A+V++Y TLI G CK   V +   LF EM    +  +   Y  LI G
Sbjct: 335 VKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHG 394

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           L   G++  A  L  ++V  G   DL  Y ++   LC+ +  DKA  L +     +  PD
Sbjct: 395 LCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPD 454

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
                 +L      G +++   L + +                  + K+  +  A  +F 
Sbjct: 455 IQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFS 514

Query: 403 ELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAI 454
           E+   G S +   YN++    L   E  + + L  +M  RG +++V++ +  + +
Sbjct: 515 EMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGM 569



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 104/235 (44%), Gaps = 14/235 (5%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + + +  +M      PD+  Y  +   L   R+LD  + + + ++    + D+  Y
Sbjct: 399 GRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIY 458

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T++ G+C+ G +    +LF  +   G+  +   Y ++I GL  +G + +A  L  ++  
Sbjct: 459 TTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNK 518

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G   +   YN I  G  R  +  +  +L E  +    + D ST   L+   ++ G   +
Sbjct: 519 NGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQS 578

Query: 362 FFKLLAQMEKL-----------KFSVAADLEKFFEFLVGKEERIMMALDVFEELK 405
             ++L ++  L           +F + A  EK    +V + E + M L   EEL+
Sbjct: 579 VKQILCKIVILYERNLGETLLFQFWMEAPSEK---LMVTECEELSMKLTFHEELQ 630


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 153/630 (24%), Positives = 273/630 (43%), Gaps = 71/630 (11%)

Query: 48  PHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHL---SPIARFITDAFRK--NQFQ 102
           PH S    +++ +   +   K  SP  + +   + +     +P  R + + F +    F+
Sbjct: 16  PHLSQ--RIKQTESEIVQMFKLSSPKDEIQRLPMNQKFPRNNPSVRTLDERFIRILKIFK 73

Query: 103 WGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           WGP     L  L+ +V   LV EVLK++    +  +FF WAGK++ ++H+  +Y AL +C
Sbjct: 74  WGPDAEKALEVLKLKVDHRLVREVLKIDVEIHVKIQFFKWAGKRRNFEHDSTTYMALIHC 133

Query: 162 LS----------------RNNLFRAADQVPELMDSQGR---IAEMLEILEKMRRNLCKPD 202
           L                 R+        + E++   G+   + + L I  +++   CKP 
Sbjct: 134 LDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPT 193

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEM--KKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
              Y +MI +L  E + +    ++ EM  + D +  D + Y  LI    K GR      L
Sbjct: 194 SNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCL-PDTVTYSALIAAFGKLGRDDSAISL 252

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F EMKENG+     IY  ++      G+V KA  L++++ + G    +  Y  +I G+ +
Sbjct: 253 FDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGK 312

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF------ 374
             + ++AY +F   +++   PD   +N L+    + GR+ +  KL  +ME L+       
Sbjct: 313 AGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVT 372

Query: 375 ----------SVAADLEKFFEFLVGKE--------------------ERIMMALDVFEEL 404
                     S A   E F  +   KE                     R+  AL + EE+
Sbjct: 373 YNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEM 432

Query: 405 KGKGYSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
             KG++  P  Y  L+ AL +    + A  LF ++R      ++  +++ I+   + G +
Sbjct: 433 DEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRL 492

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
            EA +  N++ ++   P V AYN L  G+ ++G  D A  L+R    N  + P    + +
Sbjct: 493 SEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCT-PDLNSHNI 551

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            +    R+G  +  IE+   M      P+ V  + ++  + + G  EEA K+   +  + 
Sbjct: 552 ILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKG 611

Query: 584 LLTEANTIVYDEILIEHMKKKTADLVLSGL 613
              E + I Y  IL E + K   D   +GL
Sbjct: 612 F--EYDLITYSSIL-EAVGKIDEDHTPAGL 638


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 191/450 (42%), Gaps = 56/450 (12%)

Query: 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQ------------------GRIAEMLEI 190
            H+  S+N L   L R      A +    MD +                   R+++ +E+
Sbjct: 76  SHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDGLCKANRVSQAVEL 135

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
           LE M+   C PDV  YT ++  L  E  + A   V  EM       +++ Y +L+ GLC+
Sbjct: 136 LESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCR 195

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
             RV     L R+M   G   +   YG LI+GL   G+V  AC +L D++D G   DL I
Sbjct: 196 ARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMI 255

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           YN +I GLC+  Q D++  L    V   + PD  T + ++       R+D   +LL    
Sbjct: 256 YNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLY-- 313

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVK 429
                                            +K +G    V +Y+ L+  L + G+V 
Sbjct: 314 ---------------------------------VKSRGCPPDVILYSTLIDGLCKAGKVD 340

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
           +A  L+  M G   + + +++S  I    ++G + EA     +++ M   PS   YN L 
Sbjct: 341 EAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLI 400

Query: 490 KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK-IIEVLNEMTQEG 548
           KGLC +  +D A+ LV + +      P+   Y + I  +CR    +   ++   EM   G
Sbjct: 401 KGLCDLNHLDEAIELVEE-MERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNG 459

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTN 578
             P+ +  S ++ G+ K   L E R +  +
Sbjct: 460 VIPDHITYSILLEGLKKSKDLHELRHLVLD 489



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 165/387 (42%), Gaps = 45/387 (11%)

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           MR + C+P+V  Y ++I  L      D    ++E MK       ++ Y TL+ GL + G+
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           + R   LF+EM +     D   + +L+ GL   GK+  A +  + + D     ++  Y+ 
Sbjct: 61  LERAMALFQEMLDRRSH-DVISFNILVTGLCRAGKIETALEFFRKM-DDRCSPNVITYSV 118

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           +I GLC+  +  +A +L E       +PD  T   L+         D   K         
Sbjct: 119 LIDGLCKANRVSQAVELLESMKARGCSPDVITYTILV---------DGLCK--------- 160

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKAL 432
                            E ++  A +V  E+   G   ++  YN L+  L     V  AL
Sbjct: 161 -----------------ESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDAL 203

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            L   M       N +++   I    + G + +AC     +I+    P +  YN L  GL
Sbjct: 204 ALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGL 263

Query: 493 CKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
           CK  ++D ++ L+R       SG   P    Y+  I  +CRS   ++   +L  +   GC
Sbjct: 264 CKADQVDESIALLR----RAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGC 319

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVF 576
           PP+ ++ S +I G+CK G ++EA  ++
Sbjct: 320 PPDVILYSTLIDGLCKAGKVDEAFDLY 346



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 153/375 (40%), Gaps = 50/375 (13%)

Query: 96  FRKNQFQWGPQVVT---------------------ELSKLRRVTPDLVAEVLKVENNPTL 134
           FRK   +  P V+T                     E  K R  +PD++   + V+     
Sbjct: 102 FRKMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKE 161

Query: 135 ASKFFHWAGKQK----GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ--------- 181
           +     W   ++    G   N  +YN+L + L R    R +D +  + D           
Sbjct: 162 SKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRAR--RVSDALALMRDMTCRGCTPNVV 219

Query: 182 ------------GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
                       GR+ +   +L  M      PD+  Y  +I  L     +D  + +    
Sbjct: 220 TYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRA 279

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
               ++ DV+ Y ++I GLC+  R+     L   +K  G   D  +Y  LI+GL   GKV
Sbjct: 280 VSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKV 339

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            +A DL + +   G  AD+  Y+++I GLC+  + D+A+ L    V+    P   T N L
Sbjct: 340 DEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSL 399

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI-MMALDVFEELKGKG 408
           +    ++  +D   +L+ +ME+   + +A         + + ER+   ALD F+E+   G
Sbjct: 400 IKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNG 459

Query: 409 YSSVPI-YNILMGAL 422
                I Y+IL+  L
Sbjct: 460 VIPDHITYSILLEGL 474


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 128/511 (25%), Positives = 217/511 (42%), Gaps = 60/511 (11%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE 176
           + P +V  VL+  ++   A KFF W   Q GYKH+  + N L     R            
Sbjct: 97  LVPSVVGRVLQQLDDLDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVR------------ 144

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
               + +  E  ++ +  R  LC PD   Y+ +I      R+     R+ +EM+K  +  
Sbjct: 145 ----KKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVP 200

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
               Y T+I GLC  GRV      +R+M+ N        Y +L++ L    ++  A  +L
Sbjct: 201 HNAVYNTIIKGLCDNGRVDSALVHYRDMQRN-CAPSVITYTILVDALCKSARISDASLIL 259

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
           +D++++G   ++  YN++I G C++   D+A  LF   +++  +PD  T N L+    + 
Sbjct: 260 EDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQ 319

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN 416
            R  +  KLL +M K                 G E   +                   YN
Sbjct: 320 ERPQDGAKLLQEMVKY----------------GCEPNFI------------------TYN 345

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            LM +L++ G+   A  L   M   + + +  +F++ I    + G +  A E    + + 
Sbjct: 346 TLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDR 405

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
             +P +  YN +  G C+   ID A  L+   +      P    Y   +  +C++ + ++
Sbjct: 406 GCLPDIYTYNIMISGACRANRIDDARQLLER-MTEAGCPPDVVTYNSIVSGLCKASQVDE 464

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
             EV   +   G   + V CS +I G+CK   L++A K+   LRE +    A  +V   I
Sbjct: 465 AYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKL---LREMERNGSAPDVVAYTI 521

Query: 597 LIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
           LI    K  AD +   L FF   S++  KGC
Sbjct: 522 LIHGFCK--ADQLDKSLAFF---SEMLDKGC 547



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 124/537 (23%), Positives = 231/537 (43%), Gaps = 34/537 (6%)

Query: 97  RKNQFQWGPQVVTELSKLRRVTPD--LVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFA 153
           +   FQ   +++ E+ K R + P   +   ++K + +N  + S   H+   Q+    +  
Sbjct: 179 KARDFQQAYRLLDEMEK-RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVI 237

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           +Y  L   L ++                 RI++   ILE M    C P+V  Y  +I   
Sbjct: 238 TYTILVDALCKS----------------ARISDASLILEDMIEAGCAPNVVTYNTLINGF 281

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
               N+D  + ++ +M ++    DV  Y  LI G CK  R   G +L +EM + G   + 
Sbjct: 282 CKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNF 341

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             Y  L++ LV  GK   A +L + ++    +     +N +I   C+V Q D AY+LF++
Sbjct: 342 ITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQL 401

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KE 391
                  PD  T N ++       R+D+  +LL +M +       D+  +   + G  K 
Sbjct: 402 MTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEA--GCPPDVVTYNSIVSGLCKA 459

Query: 392 ERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
            ++  A +V+E L+  GY   V   + L+  L +   +  A  L  +M       + +++
Sbjct: 460 SQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAY 519

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +I I    ++  + ++    +++++   VP+V  Y+ +   LCK   +    ML++  L 
Sbjct: 520 TILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLE 579

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
              + P    Y   I  +C+S   ++  E+   M Q GC P  V  + ++  +CK   L+
Sbjct: 580 RGVT-PDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLD 638

Query: 571 EARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
           EA  +   +     L   +T+ Y+ +     K    D      K F L   +K++GC
Sbjct: 639 EAIHLLEVMESDGCL--PDTVTYNSVFDGFWKSAEHD------KAFRLFQAMKSRGC 687



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 181/439 (41%), Gaps = 74/439 (16%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E + +  +M  N C PDVF Y  +I     +       ++ +EM K   E + + Y
Sbjct: 285 GNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITY 344

Query: 242 VTLIMGL-----------------------------------CKGGRVVRGHELFREMKE 266
            TL+  L                                   CK G++   +ELF+ M +
Sbjct: 345 NTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTD 404

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G L D   Y ++I G     ++  A  LL+ + ++G   D+  YNSI+ GLC+  Q D+
Sbjct: 405 RGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDE 464

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           AY+++EV        D  T + L+    +  R+D+  KLL +ME+     A D+  +   
Sbjct: 465 AYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMER--NGSAPDVVAYTIL 522

Query: 387 LVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           + G  K +++  +L  F E+  KG   +V  Y+I++  L +   V+    L   M    +
Sbjct: 523 IHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 582

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             +++ ++  I    +S    EA E +  + +    P+V  YN L   LCK+  +D A+ 
Sbjct: 583 TPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIH 642

Query: 504 LVR-----DCLGNVAS-----------------------------GPTEFKYALTILHVC 529
           L+       CL +  +                              PT F Y+L +  + 
Sbjct: 643 LLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLV 702

Query: 530 RSGEAEKIIEVLNEMTQEG 548
              + ++ +E+  E  + G
Sbjct: 703 AEEKMDQAMEIWEEALEAG 721



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 146/325 (44%), Gaps = 27/325 (8%)

Query: 134 LASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG----------- 182
           LA + F      +G   +  +YN +     R N    A Q+ E M   G           
Sbjct: 394 LAYELFQLM-TDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSI 452

Query: 183 --------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
                   ++ E  E+ E +R      DV   + +I  L   R LD   ++  EM+++  
Sbjct: 453 VSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGS 512

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
             DV+AY  LI G CK  ++ +    F EM + G +     Y ++I+ L    +V   C 
Sbjct: 513 APDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCM 572

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           LLK +++ G   D  +Y S+I GLC+   +D+AY+L+++  Q   AP   T N L+    
Sbjct: 573 LLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLC 632

Query: 355 EMGRMDNFFKLLAQMEK---LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS 411
           ++ R+D    LL  ME    L  +V  +   F  F    E     A  +F+ +K +G S 
Sbjct: 633 KVSRLDEAIHLLEVMESDGCLPDTVTYN-SVFDGFWKSAEHD--KAFRLFQAMKSRGCSP 689

Query: 412 VP-IYNILMGALLEIGEVKKALYLF 435
            P +Y++L+  L+   ++ +A+ ++
Sbjct: 690 TPFMYSLLLTKLVAEEKMDQAMEIW 714



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 2/166 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
             R+ +   +L+ M      PD   YT++I  L    + D    +++ MK+      V+ 
Sbjct: 564 SARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVT 623

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+  LCK  R+     L   M+ +G L D   Y  + +G     +  KA  L + + 
Sbjct: 624 YNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMK 683

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ--DDLAPDFS 344
             G      +Y+ ++  L   ++ D+A +++E  ++   D+ P+ S
Sbjct: 684 SRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAGADVDPEIS 729


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 148/610 (24%), Positives = 251/610 (41%), Gaps = 112/610 (18%)

Query: 101 FQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQ-------------- 145
            Q G  +   L + R  + P +V+ VL+   +P  A  FF WAG +              
Sbjct: 74  LQSGSNIRERLEQWRGTLQPAVVSRVLQRLKDPQTAIVFFVWAGDRGFKHSTFTRNCFLQ 133

Query: 146 --------------------KGYKHNFASYNALAYCLSRNN----LFRAADQV------P 175
                                GY  +  +Y+ +   L + N     F   D+       P
Sbjct: 134 TLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKP 193

Query: 176 EL---------MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVW 226
           E+             GR+ + LEI     RN+  PD  AY A+I     + + D  L   
Sbjct: 194 EVSVYTILTRAFCKTGRLKDALEIF----RNIPSPDAIAYNAIIHGHCRKNDCDGALEFL 249

Query: 227 EEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
           +EM +  V  DV  Y  LI GLCK  +  +  E+  EM + G+  D   +  +++GL   
Sbjct: 250 KEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKA 309

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
           GK  +A  LL  + +   R     YN++I GLC+ +  D+A  L +  V     PD  T 
Sbjct: 310 GKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTY 369

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEK-------LKFSV-------AADLEKFFEFL----- 387
           + L     + GR+D  F+L+ +M         + ++        A+  EK +E L     
Sbjct: 370 SILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVS 429

Query: 388 ----------------VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKK 430
                           + KE R+  AL + E +  +G + SV  Y  LM  L   G V +
Sbjct: 430 SGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDE 489

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE-MSQVPSVAAYNCLT 489
           A ++F +M   +   ++L++   +  + +S    EA     K+++ +   P +  YN L 
Sbjct: 490 AHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEA----QKVVDGIRGTPYIDVYNALM 545

Query: 490 KGLCKIGEIDA-----AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
            G CK G +D        M  R C+ N+ +      Y + +  +C+ G+ ++    L  M
Sbjct: 546 DGYCKEGRLDEIPNVFEDMACRGCVPNIKT------YNIVMDGLCKHGKVDEAFPFLESM 599

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
              GC P+ V  + II G+ K    +EAR+V   + +  +  +A  + Y+ ++ +  K++
Sbjct: 600 HSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDA--VTYNTLMAQFCKEE 657

Query: 605 TADLVLSGLK 614
             D  +  LK
Sbjct: 658 RFDDAVGILK 667



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 208/449 (46%), Gaps = 43/449 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ + L+++E M +  C P V  YTA++  L     +D    +++EM      AD +A
Sbjct: 449 EGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALA 508

Query: 241 YVTLIMGLCKGGRV---------VRGH-----------------------ELFREMKENG 268
           YV+L+ G CK  R          +RG                         +F +M   G
Sbjct: 509 YVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRG 568

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
            + +   Y ++++GL   GKV +A   L+ +  +G   D+  YN II GL +  +  +A 
Sbjct: 569 CVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEAR 628

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
           ++ +  +Q  + PD  T N L+    +  R D+   +L  M  +K  V  D   +   + 
Sbjct: 629 QVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNM--IKAGVDPDNVTYNTLIS 686

Query: 389 G--KEERIMMALDVFEELKGKG--YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
           G  +  R+  A ++  E+   G   S+   YN ++  L + G +K+AL L   M G  +E
Sbjct: 687 GLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVE 746

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            N+++++I I    + G + EA    + + EM  +    +Y  +  GLCK  ++D A  L
Sbjct: 747 ANTVTYNIFIDRLCKEGRLDEA---SSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRASKL 803

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
            R+ +       T   + L I    ++   ++ + +L  M Q GC P+ +  + +I+ +C
Sbjct: 804 AREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLC 863

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTIVY 593
           K   +++A ++F  +  R ++  A+++ Y
Sbjct: 864 KLDKVDKAWELFDEMAVRGIV--ASSVSY 890



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 131/547 (23%), Positives = 231/547 (42%), Gaps = 61/547 (11%)

Query: 97  RKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVE-----NNPTLASKFFHWAGKQKGYKHN 151
           RKN      + + E+++ R+V PD+    + ++     +    AS+  H     +G   +
Sbjct: 238 RKNDCDGALEFLKEMNE-RKVAPDVFTYNILIDGLCKASKTDKASEMLHEM-VDRGVTPD 295

Query: 152 FASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIR 211
             ++N++   L +   F  A  +  +M                 RN C+P    Y  +I 
Sbjct: 296 TVTFNSIMDGLCKAGKFERAHSLLAVM---------------AERN-CRPSCCTYNTLIS 339

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
            L  ++N+D    + +E        DV+ Y  L  GLCK GR+    EL +EM   G   
Sbjct: 340 GLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTP 399

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           +   Y  LI+GL    K  KA +LL+ LV SG+  D+  Y  I+ GLC+  + DKA K+ 
Sbjct: 400 NLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMV 459

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-----------------LKF 374
           E  ++    P   T   L+      GR+D    +  +M                    K 
Sbjct: 460 EGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKS 519

Query: 375 SVAADLEKFFEFLVG---------------KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
           S   + +K  + + G               KE R+    +VFE++  +G   ++  YNI+
Sbjct: 520 SRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIV 579

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           M  L + G+V +A      M       + +S++I I    ++    EA +  +++I+   
Sbjct: 580 MDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGI 639

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P    YN L    CK    D A+ ++++ +      P    Y   I  + ++       
Sbjct: 640 PPDAVTYNTLMAQFCKEERFDDAVGILKNMI-KAGVDPDNVTYNTLISGLSQTNRLGDAY 698

Query: 539 EVLNEMTQEGCPPNEVIC-SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           E+++EM + GC  +     + II  +CK G L++A  +  ++    +  EANT+ Y+ I 
Sbjct: 699 ELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGV--EANTVTYN-IF 755

Query: 598 IEHMKKK 604
           I+ + K+
Sbjct: 756 IDRLCKE 762



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 6/191 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + + L +++ M  +  + +   Y   I  L  E  LD    +  EM       D ++
Sbjct: 727 EGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMD---TLRDEVS 783

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y T+I+GLCK  ++ R  +L REM    G+ I    + +LI+      ++ +A  LL  +
Sbjct: 784 YTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLM 843

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           V  G    +  YN +I  LC++ + DKA++LF E+ V+  +A   S    +   C + GR
Sbjct: 844 VQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQ-GR 902

Query: 359 MDNFFKLLAQM 369
                ++L +M
Sbjct: 903 GKEALQVLEEM 913



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 5/128 (3%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTA-----MIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           AE L+   K+ R +        T+     +I      + LD  L +   M +      V+
Sbjct: 794 AEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVI 853

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I  LCK  +V +  ELF EM   GI+     Y VLI GL G+G+  +A  +L+++
Sbjct: 854 TYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEM 913

Query: 300 VDSGYRAD 307
             S    D
Sbjct: 914 ASSDCEID 921



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 41/90 (45%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E L +L  M +  C P V  Y  +I  L     +D    +++EM    + A  ++Y 
Sbjct: 832 RLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYT 891

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILID 272
            LI GLC  GR     ++  EM  +   ID
Sbjct: 892 VLIYGLCGQGRGKEALQVLEEMASSDCEID 921


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 194/395 (49%), Gaps = 14/395 (3%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
            PDV+ Y+ +I      R+L++  +V EEM++     +V+ Y TLI GLC+ G +     
Sbjct: 240 SPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFG 299

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
             +EM++ G++ D   YG +I GL   G+  +A  LL ++  +G   ++ +Y+++I G  
Sbjct: 300 YKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFM 359

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           R    D+A+K+ +      + P+  T + L+    ++GRM    ++L QM K+ +   AD
Sbjct: 360 RQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGY--MAD 417

Query: 380 LEKFFEFLVG------KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
              +   + G      KEE  ++      E++  G S +V  Y+I++  L +IGE ++A 
Sbjct: 418 TMTYNLVIEGHLRQHNKEEAFLL----LNEMRKGGISPNVYTYSIIINGLCQIGESERAS 473

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            L  +M    L+ N+  ++  I  +   G    ACE   K+   +  P +  YN L  GL
Sbjct: 474 GLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGL 533

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
             +G++D A+    + L      P +F Y   I     +G  EK  ++L++M   G  PN
Sbjct: 534 SNVGKMDEAIEYYDEML-EKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPN 592

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           + I + I+ G  K   LE+      ++ E+ L+ +
Sbjct: 593 DFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPD 627



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 183/402 (45%), Gaps = 6/402 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR  +   +L++M      P+V  Y+ +I     + N D   ++ +EM    V+ + + 
Sbjct: 326 RGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKIT 385

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI GLCK GR+ R   + ++M + G + D   Y ++IEG + +    +A  LL ++ 
Sbjct: 386 YDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMR 445

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   ++  Y+ II GLC++ + ++A  L E  + D L P+     PL+      G   
Sbjct: 446 KGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFS 505

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYSSVPI-YNI 417
              + L +M +   +   DL  +   ++G      M  A++ ++E+  KG+      Y  
Sbjct: 506 LACETLKKMTRENLT--PDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGG 563

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+      G ++KA  L  +M    L  N   ++  ++ + +S ++ +       ++E  
Sbjct: 564 LIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKG 623

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
            +P    Y  +   L   G + AA+ ++     N    P    Y   I   C++ + EK 
Sbjct: 624 LMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKN-GLVPDSLIYGSLISGFCKAADMEKA 682

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           + +L+EM ++G  P     +A+I G CK   +  AR +F ++
Sbjct: 683 VGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSI 724



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 183/422 (43%), Gaps = 18/422 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+     IL++M +     D   Y  +I     + N +    +  EM+K  +  +V  Y
Sbjct: 397 GRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTY 456

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I GLC+ G   R   L  +M  +G+  +  +Y  LI G   EG    AC+ LK +  
Sbjct: 457 SIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTR 516

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                DL  YNS+I GL  V + D+A + ++  ++    P+  T   L+   +  G ++ 
Sbjct: 517 ENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEK 576

Query: 362 FFKLLAQM-----EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP--- 413
             +LL QM         F  A  LE +F     K + +       + +  KG   +P   
Sbjct: 577 AEQLLHQMLNSGLNPNDFIYAQILEGYF-----KSDNLEKVSSTLKSMLEKGL--MPDNR 629

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           +Y I++  L   G ++ A+ +   +    L  +SL +   I    ++ D+ +A    +++
Sbjct: 630 LYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEM 689

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            +    P ++ YN L  G CK  +I  A  +    +      P    Y   I   C++G+
Sbjct: 690 AKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICK-GLPPNCVTYTTLIDGYCKAGD 748

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL--RERKLLTEANTI 591
               I++ NEM  EG  P+  + S + +G    G L++A  +   +  R   +++  NT+
Sbjct: 749 IRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISSFNTL 808

Query: 592 VY 593
           V+
Sbjct: 809 VH 810



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 93/468 (19%), Positives = 180/468 (38%), Gaps = 69/468 (14%)

Query: 82  QRHLSPIARFITDAFRKNQFQWGPQV------------VTELSKLRR--VTPDLV---AE 124
           +R    + + I D  + N F + P +               L K+ R  +TPDL    + 
Sbjct: 470 ERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSL 529

Query: 125 VLKVENNPTLASKFFHWAGK-QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR 183
           ++ + N   +     ++    +KG++ N  +Y  L +  S       A+Q+   M + G 
Sbjct: 530 IIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGL 589

Query: 184 ------IAEMLE-------------ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLR 224
                  A++LE              L+ M      PD   Y  +I  L++  ++ A + 
Sbjct: 590 NPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVS 649

Query: 225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
           V   ++K+ +  D + Y +LI G CK   + +   L  EM + GI    + Y  LI+G  
Sbjct: 650 VLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFC 709

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
               +  A ++   ++  G   +   Y ++I G C+      A  L+   + + +APD  
Sbjct: 710 KSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAF 769

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--------RIMM 396
             + L   C+  G +     +  +M    +++ +           + +         +MM
Sbjct: 770 VYSVLAAGCSNSGDLQQALFITEEMIARGYAIISSFNTLVHGFCKRGKLQETVKFLHVMM 829

Query: 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
             D+   L       + + NI++G L E G++ +A  +F +++               Q 
Sbjct: 830 DKDIVPSL-------LTVENIVIG-LGEAGKLSEAHTIFVELQ---------------QK 866

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
           +    D          +I    VP    +N + +  CK G +D A+ML
Sbjct: 867 NASHRDTDHLSSLFTDMINQGLVPLDVIHN-MIQSHCKQGYLDKALML 913



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 91/418 (21%), Positives = 168/418 (40%), Gaps = 29/418 (6%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD FA+ A          +  C          L++  + AY T  + L    R + G + 
Sbjct: 120 PDAFAHLA----------VSLCAAGLYPQANGLLDQMIRAYPTPPLVLSSVHRALSGSDQ 169

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
            R      +++D     VL++     G+V    +++  + D G    L   N ++  L R
Sbjct: 170 GRR----PVVLD-----VLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLR 220

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
               D  +K+        ++PD  T + L+    ++  +++  K++ +M +   S+    
Sbjct: 221 ADALDLLWKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNV-- 278

Query: 381 EKFFEFLVGKEERIMMALDVFEELKG-KGYSSVP---IYNILMGALLEIGEVKKALYLFG 436
              +  L+G   R     + F   K  + Y  VP    Y  ++  L + G   +A  L  
Sbjct: 279 -VTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLD 337

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M    L  N + +S  I   +  G+  EA +   ++      P+   Y+ L +GLCK+G
Sbjct: 338 EMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLG 397

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            +  A  +++  +  +        Y L I    R    E+   +LNEM + G  PN    
Sbjct: 398 RMGRASRILKQ-MTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTY 456

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK 614
           S II+G+C+ G  E A  +   +    L  + N  VY  ++  + ++ +  L    LK
Sbjct: 457 SIIINGLCQIGESERASGLLEQMIADGL--KPNAFVYAPLISGYCREGSFSLACETLK 512


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 128/522 (24%), Positives = 232/522 (44%), Gaps = 39/522 (7%)

Query: 105 PQVVTELSKLRRVTPDL-------VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNA 157
           P V+  ++ L+    DL       V   LK E N  LA  FF        +KH   +Y  
Sbjct: 19  PFVLNTINPLQNEQKDLNLLKESEVLNKLKNEPNILLALHFFKSIANSNSFKHTPLTYTT 78

Query: 158 LAYCLSRNNLFRAADQVPELMDSQG------------------RIAEM-LEILEKMRRNL 198
           +   L           + +LM  +G                   +AE  L+   ++    
Sbjct: 79  MIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYRIGEFG 138

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           CKP V  Y  ++  L +E        ++  MK+D +E +V  Y  L+  LCK  RV    
Sbjct: 139 CKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAAR 198

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           +L  EM   G + D   Y  ++  +   GKV +A +L   +     ++ + +YN++I G 
Sbjct: 199 KLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRI-----KSFVPVYNALINGF 253

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           CR  + ++ ++LF     + + PD  T + ++   +EMG ++    +LA+M       + 
Sbjct: 254 CREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKM--FLRGCSP 311

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLF 435
           ++  F   + G     R+  ALD++  +  +G     + YN L+  L   G++ +A+ + 
Sbjct: 312 NVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVS 371

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            KM    +  N  ++S  I    ++GD++ A E  NK+I    +P+V  Y C+   LC+ 
Sbjct: 372 QKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRN 431

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
              + A+ L+ + + N    P    +   I  +C SG+ E  ++VLN+M Q GC PN   
Sbjct: 432 SMFNHALHLIEN-MANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTT 490

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            + ++ G+       EA ++   + E ++  ++N + Y+ IL
Sbjct: 491 YNEVLDGLFNAKRTREALQIVGEIEEMEI--KSNLVTYNTIL 530



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 166/392 (42%), Gaps = 38/392 (9%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           V   +   G +   L +L KM    C P+V  +T++++       L   L +W  M ++ 
Sbjct: 284 VINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEG 343

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
            E + +AY TLI GLC  G++V    + ++M+ NG+  +   Y  LI+G    G +  A 
Sbjct: 344 SEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGAS 403

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--V 351
           ++   ++ +G   ++ +Y  ++  LCR   F+ A  L E     +  P+  T N  +  +
Sbjct: 404 EIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGL 463

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS 411
           CC+  G+ +   K+L QM   ++  A +                                
Sbjct: 464 CCS--GKTEWAMKVLNQMR--QYGCAPN-------------------------------- 487

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           V  YN ++  L      ++AL + G++  + ++ N ++++  +     +G    A +   
Sbjct: 488 VTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAG 547

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           K++     P    YN +    CK GE+  A+ LV          P  F Y   +  VC  
Sbjct: 548 KLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNW 607

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
              ++ +  L++M  EG  PN    +A++ G+
Sbjct: 608 IGVDEAVVHLDKMINEGICPNRATWNALVRGL 639


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 189/403 (46%), Gaps = 7/403 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG++ +  ++ E+M  N   PD   Y  +I   A +  +D   R++EEM    +E  +  
Sbjct: 21  QGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYT 80

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL-KDL 299
           Y +L+   CK  ++    ELF+ M E G   D   Y  +I GL   GKV +A ++L   +
Sbjct: 81  YNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKM 140

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           ++ G  A+   YN++I GLC+ +  ++AYKL E        PD  T N +L     MG++
Sbjct: 141 IERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKV 200

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGY-SSVPIYN 416
               +    M    +S   D+  +   L  + KE +   A+ +F+++  KGY      YN
Sbjct: 201 SEAKQFFDSMPSRGYS--PDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYN 258

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++  L     + +A  +F KM       N  ++SI +  H  +  + +A +   ++ ++
Sbjct: 259 SILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKI 318

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
             VP V  YN L  GLCK   +D A  L    + N    P    Y++ +  +C++ +   
Sbjct: 319 GAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDN-GCAPDIVSYSVVLNGLCKTNKVHD 377

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
              + + M +    P+ V  + ++ G+CK G L+EA+ +   +
Sbjct: 378 ARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQM 420



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 175/407 (42%), Gaps = 71/407 (17%)

Query: 182 GRIAEMLEIL-EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           G++ E LE+L  KM    C  +  AY A+I  L  + N++   ++ EEM       D + 
Sbjct: 127 GKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNIT 186

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T++ GLC+ G+V    + F  M   G   D   Y  L++ L  EGK  +A  L KD++
Sbjct: 187 YNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVI 246

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             GY  D   YNSI+ GL R    D+A ++F+  V    AP+ +T + +L       ++D
Sbjct: 247 AKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVD 306

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
           +  K+L +M K+                                       V  YNIL+ 
Sbjct: 307 DAHKVLEEMSKI----------------------------------GAVPDVVTYNILLD 332

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L +   V KA  LF  M       + +S+S+ +    ++  + +A    +++IE   VP
Sbjct: 333 GLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVP 392

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  +N L  GLCK G++D A                                     ++
Sbjct: 393 DVVTFNILMDGLCKAGKLDEAK------------------------------------DL 416

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           L++MT  GC P+ V  + +++G+ K G   +A ++   ++E+  L++
Sbjct: 417 LDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 463



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 190/396 (47%), Gaps = 7/396 (1%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C P+ + +  +++    +  L    +++E+M  + +  D + Y  LI G  K GRV   +
Sbjct: 4   CSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN 63

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L+ EM   G+      Y  L+     E K+ +A +L K + + G+  D+  Y++II GL
Sbjct: 64  RLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGL 123

Query: 319 CRVKQFDKAYK-LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
           C+  +  +A + LF   ++   + +    N L+    +   ++  +KLL +M    +   
Sbjct: 124 CKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGY--V 181

Query: 378 ADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL 434
            D   +   L G  +  ++  A   F+ +  +GYS  V  YN L+ AL + G+  +A+ L
Sbjct: 182 PDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKL 241

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           F  +       ++++++  +       ++ EA E   K++     P+ A Y+ +  G C+
Sbjct: 242 FKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCR 301

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
             ++D A  ++ + +  + + P    Y + +  +C++   +K  E+ + M   GC P+ V
Sbjct: 302 AKKVDDAHKVLEE-MSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIV 360

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             S +++G+CK   + +AR +F  + ERKL+ +  T
Sbjct: 361 SYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVT 396



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 126/278 (45%), Gaps = 20/278 (7%)

Query: 136 SKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMR 195
           +K F  +   +GY  +  +YN L   L +                +G+  E +++ + + 
Sbjct: 203 AKQFFDSMPSRGYSPDVVAYNGLLDALYK----------------EGKTDEAMKLFKDVI 246

Query: 196 RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVV 255
                PD   Y +++  LA + N+D    ++++M       +   Y  ++ G C+  +V 
Sbjct: 247 AKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVD 306

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
             H++  EM + G + D   Y +L++GL     V KA +L   +VD+G   D+  Y+ ++
Sbjct: 307 DAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVL 366

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            GLC+  +   A  LF+  ++  L PD  T N L+    + G++D    LL QM      
Sbjct: 367 NGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMT--CSG 424

Query: 376 VAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSS 411
            A D   +   + G  K+ R + A  + + +K KG+ S
Sbjct: 425 CAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLS 462



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 144/317 (45%), Gaps = 24/317 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-------------------GRIA 185
           ++G   N  +YNAL   L ++     A ++ E M S+                   G+++
Sbjct: 142 ERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVS 201

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E  +  + M      PDV AY  ++  L  E   D  +++++++       D + Y +++
Sbjct: 202 EAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSIL 261

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
           +GL +   +    E+F++M  +G   + A Y +++ G     KV  A  +L+++   G  
Sbjct: 262 LGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAV 321

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  YN ++ GLC+    DKA++LF   V +  APD  + + +L    +  ++ +   L
Sbjct: 322 PDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVL 381

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGAL 422
             +M  ++  +  D+  F   + G  K  ++  A D+ +++   G +   + YN LM  L
Sbjct: 382 FDRM--IERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGL 439

Query: 423 LEIGEVKKALYLFGKMR 439
            + G   +A  L   M+
Sbjct: 440 RKQGRHIQADRLTQAMK 456



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 25/228 (10%)

Query: 115 RRVTPDLVA-----EVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFR 169
           R  +PD+VA     + L  E     A K F      KGY  +  +YN++   L+R +   
Sbjct: 213 RGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDV-IAKGYMPDTVTYNSILLGLARKSNMD 271

Query: 170 AADQVPELMDSQG-------------------RIAEMLEILEKMRRNLCKPDVFAYTAMI 210
            A+++ + M + G                   ++ +  ++LE+M +    PDV  Y  ++
Sbjct: 272 EAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILL 331

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
             L     +D    ++  M  +    D+++Y  ++ GLCK  +V     LF  M E  ++
Sbjct: 332 DGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLV 391

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            D   + +L++GL   GK+ +A DLL  +  SG   D   YN+++ GL
Sbjct: 392 PDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGL 439


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 194/401 (48%), Gaps = 13/401 (3%)

Query: 188  LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            +++ EKM+ N CK DVF Y  +I  L  +      L ++ EM    +  DV+ Y +L+ G
Sbjct: 1071 IKLHEKMKGN-CKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDG 1129

Query: 248  LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            LC+ GR+    E F+EM+  GI  D   Y  LI GL   G   +    L  +VD G+  D
Sbjct: 1130 LCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPD 1189

Query: 308  LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
               +  +I GLC+  +  +A ++ E+       PD  T N L+     +G++++  KL  
Sbjct: 1190 AFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFE 1249

Query: 368  QMEK--LKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
             +    +K +V +     +  L+    K+++I  A   FEE++ KG   S   YN L+GA
Sbjct: 1250 SLADRGIKLNVFS-----YNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGA 1304

Query: 422  LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
            L + G V+ A  LF +M+     +   ++ + +    ++G + EA +    I +    P+
Sbjct: 1305 LCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPN 1364

Query: 482  VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
            +  ++ L  G+C+ G+++ A     D +      P    Y + I  +C  G   + +++L
Sbjct: 1365 IEVFSILLDGMCRAGKLEEAWKQF-DEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLL 1423

Query: 542  NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             +M ++GC P+ +  + II  + K   + EA ++   +R R
Sbjct: 1424 WQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNR 1464



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 190/445 (42%), Gaps = 49/445 (11%)

Query: 200  KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
            +PD++    +I    + R +     V+    K   E D +   TL+ G+     +    +
Sbjct: 978  QPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQ 1037

Query: 260  LFREMKENGILIDRAIYGVLIEGLVGEGKVG----------------------------- 290
            LF EM + G+L D   YG+LI GL    K G                             
Sbjct: 1038 LFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDALCK 1097

Query: 291  -----KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
                 +A D+  +++ +G   D+ +Y+S++ GLCR  +  +A + F+      ++ D  T
Sbjct: 1098 DGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYT 1157

Query: 346  VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE 403
             N L+   +  G        L  M    FS   D   F   + G  KE ++  A  + E 
Sbjct: 1158 YNSLIHGLSRAGLWKEVTWFLNLMVDRGFS--PDAFTFTILIDGLCKEGKVGEAQQILEL 1215

Query: 404  LKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
            ++ KG    +  YN LM  L  +G+++ A  LF  +    +++N  S++I I  + +   
Sbjct: 1216 MRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQK 1275

Query: 463  ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML---VRDCLGNVASGPTEF 519
            I EA     ++      PS   YN L   LC+ G +  A  L   ++ C G      T  
Sbjct: 1276 IDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTC-GQFLKLST-- 1332

Query: 520  KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             Y + +  +C++G  E+ +++   + +    PN  + S ++ GMC+ G LEEA K F  +
Sbjct: 1333 -YCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEI 1391

Query: 580  RERKLLTEANTIVYDEILIEHMKKK 604
             +  L  E +TI Y+ ILI  +  K
Sbjct: 1392 SKNGL--EPDTIAYN-ILINGLCNK 1413



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 144/322 (44%), Gaps = 60/322 (18%)

Query: 146  KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS-------------------QGRIAE 186
            +G   +  +YN+L + LSR  L++       LM                     +G++ E
Sbjct: 1149 RGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGE 1208

Query: 187  MLEILEKMRRNLCKPD-----------------------------------VFAYTAMIR 211
              +ILE MR    +PD                                   VF+Y  +I 
Sbjct: 1209 AQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILIN 1268

Query: 212  VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
                ++ +D   R +EEM+   ++   + Y TLI  LC+ GRV    +LF EM+  G  +
Sbjct: 1269 GYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFL 1328

Query: 272  DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
              + Y VL++GL   G + +A DL + +  + ++ ++ +++ ++ G+CR  + ++A+K F
Sbjct: 1329 KLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQF 1388

Query: 332  EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK---LKFSVAADLEKFFEFLV 388
            +   ++ L PD    N L+      G +    KLL QME+   L  S+  ++    + L+
Sbjct: 1389 DEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNV--IIQNLL 1446

Query: 389  GKEERIMMALDVFEELKGKGYS 410
             KE  I  A+ + EE++ + +S
Sbjct: 1447 -KENEIHEAIQLLEEMRNRNFS 1467



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 128/288 (44%), Gaps = 5/288 (1%)

Query: 311  YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
            +N ++  + ++  +   + ++       + PD  T+N L+ CC  +  +   F +     
Sbjct: 949  FNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFL 1008

Query: 371  KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVK 429
            K  F   A         V  E  I  A+ +F+E+  KG       Y IL+  L +  +  
Sbjct: 1009 KRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTG 1068

Query: 430  KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
             A+ L  KM+G N + +  ++ + I    + G   EA +  +++I    +P V  Y+ L 
Sbjct: 1069 LAIKLHEKMKG-NCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLM 1127

Query: 490  KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
             GLC+ G +  A+   ++  G   S    + Y   I  + R+G  +++   LN M   G 
Sbjct: 1128 DGLCRFGRLKEALEFFKEMEGRGISADV-YTYNSLIHGLSRAGLWKEVTWFLNLMVDRGF 1186

Query: 550  PPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             P+    + +I G+CK G + EA+++   +R +    E + + Y+ ++
Sbjct: 1187 SPDAFTFTILIDGLCKEGKVGEAQQILELMRHKG--KEPDILTYNTLM 1232



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 18/220 (8%)

Query: 135  ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKM 194
            A +FF    + KG K +  +YN L   L ++   R A ++   M + G+  ++       
Sbjct: 1279 AFRFFE-EMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKL------- 1330

Query: 195  RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
                       Y  ++  L    +L+  + +++ +KK   + ++  +  L+ G+C+ G++
Sbjct: 1331 ---------STYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKL 1381

Query: 255  VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
                + F E+ +NG+  D   Y +LI GL  +G + +A  LL  + + G   D   +N I
Sbjct: 1382 EEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVI 1441

Query: 315  IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
            I  L +  +  +A +L E     + +PD   V  +L+C A
Sbjct: 1442 IQNLLKENEIHEAIQLLEEMRNRNFSPD-EAVTSMLLCLA 1480


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 216/455 (47%), Gaps = 32/455 (7%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PD   +T +IR L  E  +   L ++++M  +  + +V+ Y TLI GLCK G       
Sbjct: 137 QPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIR 196

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L R M++     +  ++  LI+ L  + +V +A ++  +++  G   ++  YNS+I GLC
Sbjct: 197 LLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLC 256

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           ++ ++     L    V   + PD  T+N ++    + G +     ++  M  +   V  +
Sbjct: 257 KLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMM--IHRGVEPN 314

Query: 380 LEKFFEFLVGK--EERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFG 436
           +  +   + G      + +A+ VF+ +  K   ++V  YN L+    +I  V KA+YLF 
Sbjct: 315 VVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFE 374

Query: 437 KMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           +M    L  N+++++  I   CHV  G + +A    ++++   Q+P +  Y  L+  LCK
Sbjct: 375 EMSRQELTPNTVTYNTLIHGLCHV--GRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCK 432

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILH-VCRSGEAEKIIEVLNEMTQEGCPPNE 553
              +D AM L++   G  ++   + +   TIL  +CR+GE E   ++ + ++ +G  PN 
Sbjct: 433 NRHLDKAMALLKAIEG--SNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNV 490

Query: 554 VICSAIISGMCKHGTLEEARKVFT--------------NLRERKLLTEANTIVYDEILIE 599
              + +I G+CK G L EA K+F+              NL  R  L     +   E+L E
Sbjct: 491 WTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEE 550

Query: 600 HMKK------KTADLVLSGLKFFGLESKLKAKGCK 628
            + +       T  L++  L   GL+  +K   CK
Sbjct: 551 MLARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCK 585



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 165/403 (40%), Gaps = 47/403 (11%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E L    +M      P    +  ++  +A  ++    L +  +M    +  DV     +I
Sbjct: 53  EALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVI 112

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
             LC   RV        ++ + G   D   +  LI GL  EGK+G+A  L   ++  G++
Sbjct: 113 NSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQ 172

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            ++  Y ++I GLC+V     A +L     Q +  P+                       
Sbjct: 173 PNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNV---------------------- 210

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
                 + FS   D        + K+ ++  A ++F E+  KG S ++  YN L+  L +
Sbjct: 211 ------VVFSTLID-------SLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCK 257

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
           + E K    L  +M    +  +  + +  +    + G + EA +  + +I     P+V  
Sbjct: 258 LCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVT 317

Query: 485 YNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           YN L  G C   E+D A+     M+ +DC+ NV S      Y   I   C+    +K + 
Sbjct: 318 YNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVIS------YNTLINGYCKIQSVDKAMY 371

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           +  EM+++   PN V  + +I G+C  G L++A  +F  +  R
Sbjct: 372 LFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVAR 414



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 125/285 (43%), Gaps = 21/285 (7%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
            +G + N  +YNAL   +CL RN +  A                 +++ + M    C  +
Sbjct: 308 HRGVEPNVVTYNALMDGHCL-RNEVDVA-----------------VKVFDTMVHKDCVAN 349

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V +Y  +I      +++D  + ++EEM +  +  + + Y TLI GLC  GR+     LF 
Sbjct: 350 VISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFH 409

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EM   G + D   Y  L + L     + KA  LLK +  S +  D+ IY +I+ G+CR  
Sbjct: 410 EMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAG 469

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           + + A  LF       L P+  T N ++    + G +    KL ++M K   S       
Sbjct: 470 ELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYN 529

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
                  +    +  +++ EE+  +G+S  V    +L+G L + G
Sbjct: 530 LITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG 574



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 152/355 (42%), Gaps = 8/355 (2%)

Query: 107 VVTELSKLRRVTP--DLVAEVLKVENNPTLAS--KFFHWAGKQKGYKHNFASYNALAYCL 162
           ++  L K R+VT   ++ +E++    +P + +     H   K   +KH     N +    
Sbjct: 216 LIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSK 275

Query: 163 SRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
              ++F   + V + +  +G +AE  ++++ M     +P+V  Y A++        +D  
Sbjct: 276 IMPDVF-TLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVA 334

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
           ++V++ M      A+V++Y TLI G CK   V +   LF EM    +  +   Y  LI G
Sbjct: 335 VKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHG 394

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           L   G++  A  L  ++V  G   DL  Y ++   LC+ +  DKA  L +     +  PD
Sbjct: 395 LCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPD 454

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
                 +L      G +++   L + +                  + K+  +  A  +F 
Sbjct: 455 IQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFS 514

Query: 403 ELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAI 454
           E+   G S +   YN++    L   E  + + L  +M  RG +++V++ +  + +
Sbjct: 515 EMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGM 569


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/445 (23%), Positives = 210/445 (47%), Gaps = 22/445 (4%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K +G   N  +YN L Y   +                 G + E   ++E M +N   PDV
Sbjct: 270 KSRGLLPNRNTYNILVYGYCK----------------MGWLKEAANVIELMTQNNLLPDV 313

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           + Y  +I  L  E  ++   ++ +EM+   +  DV++Y TLI G  +  ++    +L  E
Sbjct: 314 WTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEE 373

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M E G+  +   + ++++    EGK+  A + +  + +SG+  D   YN++I G C+   
Sbjct: 374 MSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGN 433

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
             +A++  +   + ++  D  T+N +L       +++  +KLL+   K  + +  D   +
Sbjct: 434 MGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFI--DEVSY 491

Query: 384 FEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
              +VG  K+  +  AL +++E+K K    S   YN ++G L + G+ ++A+    ++  
Sbjct: 492 GTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLE 551

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             L  +  +++  +  +   GD+ +A + HNK++E S  P V   N L +GLC  G ++ 
Sbjct: 552 SGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEK 611

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A+ L    +    +  T   Y   I  +C+ G  +    +L+EM ++   P+    +AII
Sbjct: 612 ALKLFNTWVSKGKAIDT-VTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAII 670

Query: 561 SGMCKHGTLEEARKVFTNLRERKLL 585
           + +   G + EA +  + + E+  L
Sbjct: 671 TALTDSGRIREAEEFMSKMLEKGXL 695



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/434 (24%), Positives = 199/434 (45%), Gaps = 16/434 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + +  + +E L  M +  C PD   Y  ++  L  +  L     +  +MK   +  +   
Sbjct: 221 ENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNT 280

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ G CK G +     +   M +N +L D   Y +LI GL  EG++ +A  L  ++ 
Sbjct: 281 YNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEME 340

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +     D+  YN++I G     +  +A+KL E   +  + P+  T N ++    + G+MD
Sbjct: 341 NLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMD 400

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL--KGKGYSSVPIYN 416
           +    + +ME+  FS   D   +   + G  K   +  A    +E+  K     SV + N
Sbjct: 401 DASNTITKMEESGFS--PDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTL-N 457

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++  L    ++++A  L    R     ++ +S+   I  + + G++  A +  +++ E 
Sbjct: 458 TILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEK 517

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILH-VCRSGE 533
             +PS   YNC+  GLC+ G+ + A+  + + L    SG  P E  Y  TILH  CR G+
Sbjct: 518 EIIPSTVTYNCIIGGLCQCGKTEQAISKLNELL---ESGLLPDETTYN-TILHGYCREGD 573

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
            EK  +  N+M +    P+   C+ ++ G+C  G LE+A K+F     +      +T+ Y
Sbjct: 574 VEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKG--KAIDTVTY 631

Query: 594 DEILIEHMKKKTAD 607
           + ++    K+   D
Sbjct: 632 NTLITSLCKEGRLD 645



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 171/412 (41%), Gaps = 16/412 (3%)

Query: 205 AYTAMIRVLAAERNLDACLRVWE--EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           A + ++  +A +R  D  L +       K L++  + AYV       + G+     ++F+
Sbjct: 107 AKSLLLGFIATDRRHDLHLSILRLTSPSKALLDTAIGAYV-------QSGQPHHAFQIFK 159

Query: 263 EMKENGILIDRAIYGVLIEGLV---GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           +MK   +  +      L+  LV       V  + +   D +  G   ++  +N +I G C
Sbjct: 160 KMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYC 219

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
              +F  A +   V  + + +PD  T N +L    + GR+ +   LL  M+        +
Sbjct: 220 LENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRN 279

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM 438
                 +   K   +  A +V E +        V  YN+L+  L   G +++A  L  +M
Sbjct: 280 TYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEM 339

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
             L L  + +S++  I   +E   I EA +   ++ E    P+   +N + K  CK G++
Sbjct: 340 ENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKM 399

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D A   +   +      P    Y   I   C++G   +    ++EM ++    + V  + 
Sbjct: 400 DDASNTITK-MEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNT 458

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVL 610
           I+  +C+   LEEA K+ ++ R+R    +   + Y  +++ + K    D  L
Sbjct: 459 ILRTLCREKKLEEAYKLLSSARKRGYFIDE--VSYGTLIVGYFKDGNVDRAL 508



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 42/212 (19%)

Query: 101 FQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFH-WAGKQKGYKHNFASYNALA 159
           FQ+  ++V    K    T +++   L +E     A K F+ W  K K    +  +YN L 
Sbjct: 578 FQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAI--DTVTYNTLI 635

Query: 160 YCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI-------RV 212
             L +                +GR+ +   +L +M      PD + Y A+I       R+
Sbjct: 636 TSLCK----------------EGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRI 679

Query: 213 LAAER----------------NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
             AE                  LD    V      +  ++  +AY   I  LC  G+   
Sbjct: 680 REAEEFMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKD 739

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
              +F E K+ GI +D++ Y  L++GL+   K
Sbjct: 740 AMRIFGESKQKGITVDKSTYINLMDGLIKRRK 771


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 148/614 (24%), Positives = 265/614 (43%), Gaps = 70/614 (11%)

Query: 48  PHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHL---SPIARFITDAFRK--NQFQ 102
           PH S    +++ +   +   K  SP  + +   + +     +P  R + + F +    F+
Sbjct: 16  PHLSQ--RIKQTESEIVQMFKLSSPKDEIQRLPMNQKFPRNNPSVRTLDERFIRILKIFK 73

Query: 103 WGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           WGP     L  L+ +V   LV EVLK++    +  +FF WAGK++ ++H+  +Y AL +C
Sbjct: 74  WGPDAEKALEVLKLKVDHRLVREVLKIDVEIHVKIQFFKWAGKRRNFEHDSTTYMALIHC 133

Query: 162 LS----------------RNNLFRAADQVPELMDSQGR---IAEMLEILEKMRRNLCKPD 202
           L                 R+        + E++   G+   + + L I  +++   CKP 
Sbjct: 134 LDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPT 193

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEM--KKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
              Y +MI +L  E + +    ++ EM  + D +  D + Y  LI    K GR      L
Sbjct: 194 SNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCL-PDTVTYSALIAAFGKLGRDDSAISL 252

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F EMKENG+     IY  ++      G+V KA  L++++ + G    +  Y  +I G+ +
Sbjct: 253 FDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGK 312

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF------ 374
             + ++AY +F   +++   PD   +N L+    + GR+ +  KL  +ME L+       
Sbjct: 313 AGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVT 372

Query: 375 ----------SVAADLEKFFEFLVGKE--------------------ERIMMALDVFEEL 404
                     S A   E F  +   KE                     R+  AL + EE+
Sbjct: 373 YNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEM 432

Query: 405 KGKGYSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
             KG++  P  Y  L+ AL +    + A  LF ++R      ++  +++ I+   + G +
Sbjct: 433 DEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRL 492

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
            EA +  N++ ++   P V AYN L  G+ ++G  D A  L+R    N    P    + +
Sbjct: 493 SEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEEN-GCTPDLNSHNI 551

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            +    R+G  +  IE+   M      P+ V  + ++  + + G  EEA K+   +  + 
Sbjct: 552 ILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKG 611

Query: 584 LLTEANTIVYDEIL 597
              E + I Y  IL
Sbjct: 612 F--EYDLITYSSIL 623



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 123/260 (47%), Gaps = 11/260 (4%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           +  L +S+ R +E     EKM+ N   P  F Y+ +I        ++  L + EEM +  
Sbjct: 377 IKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKG 436

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
                 AY +LI  L K  R    +ELF+E++EN       +Y V+I+ L   G++ +A 
Sbjct: 437 FAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAV 496

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           DL  ++   G   D+  YN+++ G+ RV   D+A+ L     ++   PD ++ N +L   
Sbjct: 497 DLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGF 556

Query: 354 AEMGRMDNFFKLLAQME--KLKFSVAADLEKFFEFLVGKEERIMM---ALDVFEELKGKG 408
           A  G      ++  +M+  K+K  V +     +  ++G   R  M   A  + +E+  KG
Sbjct: 557 ARTGGPKGAIEMFTRMKNSKIKPDVVS-----YNTVLGCLSRAGMFEEAAKLMKEMNSKG 611

Query: 409 YS-SVPIYNILMGALLEIGE 427
           +   +  Y+ ++ A+ +I E
Sbjct: 612 FEYDLITYSSILEAVGKIDE 631


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 209/442 (47%), Gaps = 22/442 (4%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K +G   N  +YN L Y   +                 G + E   ++E M +N   PDV
Sbjct: 270 KSRGLLPNRNTYNILVYGYCK----------------MGWLKEAANVIELMTQNNLLPDV 313

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           + Y  +I  L  E  ++   ++ +EM+   +  DV++Y TLI G  +  ++    +L  E
Sbjct: 314 WTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEE 373

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M E G+  +   + ++++    EGK+  A + +  + +SG+  D   YN++I G C+   
Sbjct: 374 MSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGN 433

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
             +A++  +   + ++  D  T+N +L       +++  +KLL+   K  + +  D   +
Sbjct: 434 MGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFI--DEVSY 491

Query: 384 FEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
              +VG  K+  +  AL +++E+K K    S   YN ++G L + G+ ++A+    ++  
Sbjct: 492 GTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLE 551

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             L  +  +++  +  +   GD+ +A + HNK++E S  P V   N L +GLC  G ++ 
Sbjct: 552 SGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEK 611

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A+ L    +    +  T   Y   I  +C+ G  +    +L+EM ++   P+    +AII
Sbjct: 612 ALKLFNTWVSKGKAIDT-VTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAII 670

Query: 561 SGMCKHGTLEEARKVFTNLRER 582
           + +   G + EA +  + + E+
Sbjct: 671 TALTDSGRIREAEEFMSKMLEK 692



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 108/434 (24%), Positives = 199/434 (45%), Gaps = 16/434 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + +  + +E L  M +  C PD   Y  ++  L  +  L     +  +MK   +  +   
Sbjct: 221 ENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNT 280

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ G CK G +     +   M +N +L D   Y +LI GL  EG++ +A  L  ++ 
Sbjct: 281 YNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEME 340

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +     D+  YN++I G     +  +A+KL E   +  + P+  T N ++    + G+MD
Sbjct: 341 NLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMD 400

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL--KGKGYSSVPIYN 416
           +    + +ME+  FS   D   +   + G  K   +  A    +E+  K     SV + N
Sbjct: 401 DASNTITKMEESGFS--PDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTL-N 457

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++  L    ++++A  L    R     ++ +S+   I  + + G++  A +  +++ E 
Sbjct: 458 TILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEK 517

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILH-VCRSGE 533
             +PS   YNC+  GLC+ G+ + A+  + + L    SG  P E  Y  TILH  CR G+
Sbjct: 518 EIIPSTVTYNCIIGGLCQCGKTEQAISKLNELL---ESGLLPDETTYN-TILHGYCREGD 573

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
            EK  +  N+M +    P+   C+ ++ G+C  G LE+A K+F     +      +T+ Y
Sbjct: 574 VEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKG--KAIDTVTY 631

Query: 594 DEILIEHMKKKTAD 607
           + ++    K+   D
Sbjct: 632 NTLITSLCKEGRLD 645



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 171/412 (41%), Gaps = 16/412 (3%)

Query: 205 AYTAMIRVLAAERNLDACLRVWE--EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           A + ++  +A +R  D  L +       K L++  + AYV       + G+     ++F+
Sbjct: 107 AKSLLLGFIATDRRHDLHLSILRLTSPSKALLDTAIGAYV-------QSGQPHHAFQIFK 159

Query: 263 EMKENGILIDRAIYGVLIEGLV---GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           +MK   +  +      L+  LV       V  + +   D +  G   ++  +N +I G C
Sbjct: 160 KMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYC 219

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
              +F  A +   V  + + +PD  T N +L    + GR+ +   LL  M+        +
Sbjct: 220 LENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRN 279

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM 438
                 +   K   +  A +V E +        V  YN+L+  L   G +++A  L  +M
Sbjct: 280 TYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEM 339

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
             L L  + +S++  I   +E   I EA +   ++ E    P+   +N + K  CK G++
Sbjct: 340 ENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKM 399

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D A   +   +      P    Y   I   C++G   +    ++EM ++    + V  + 
Sbjct: 400 DDASNTITK-MEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNT 458

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVL 610
           I+  +C+   LEEA K+ ++ R+R    +   + Y  +++ + K    D  L
Sbjct: 459 ILRTLCREKKLEEAYKLLSSARKRGYFIDE--VSYGTLIVGYFKDGNVDRAL 508



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 23/188 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + +  +   KM  N  KPDVF    ++R L  E  L+  L+++          D + 
Sbjct: 571 EGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVT 630

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI  LCK GR+     L  EM+E  +  D   Y  +I  L   G++ +A + +  ++
Sbjct: 631 YNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKML 690

Query: 301 DSGYRADLGI-----------------------YNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           + G   D  +                       Y+  I  LC   ++  A ++F  + Q 
Sbjct: 691 EKGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQK 750

Query: 338 DLAPDFST 345
            +  D ST
Sbjct: 751 GITVDKST 758



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 69/161 (42%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  + +  L ++  +   PD   Y  ++     E +++   +   +M ++  + DV   
Sbjct: 537 GKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTC 596

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLC  G + +  +LF      G  ID   Y  LI  L  EG++  A +LL ++ +
Sbjct: 597 NILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEE 656

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
                D   YN+II  L    +  +A +     ++    PD
Sbjct: 657 KELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPD 697



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 85/212 (40%), Gaps = 42/212 (19%)

Query: 101 FQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFH-WAGKQKGYKHNFASYNALA 159
           FQ+  ++V    K    T +++   L +E     A K F+ W  K K    +  +YN L 
Sbjct: 578 FQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAI--DTVTYNTLI 635

Query: 160 YCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI-------RV 212
             L +                +GR+ +   +L +M      PD + Y A+I       R+
Sbjct: 636 TSLCK----------------EGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRI 679

Query: 213 LAAERNLDACL-------RVWEEMKKDLV---------EADVMAYVTLIMGLCKGGRVVR 256
             AE  +   L       +V +  K + V         ++  +AY   I  LC  G+   
Sbjct: 680 REAEEFMSKMLEKGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKD 739

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
              +F E K+ GI +D++ Y  L++GL+   K
Sbjct: 740 AMRIFGESKQKGITVDKSTYINLMDGLIKRRK 771


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 130/547 (23%), Positives = 235/547 (42%), Gaps = 24/547 (4%)

Query: 71  SPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVEN 130
           SP S P++F ++ H  P   F      +  +Q  P +   +     + P  ++ +  +  
Sbjct: 35  SPASLPQSFSVE-HDIPAQLF--SILSRPNWQKHPSLKNLIPS---IAPSHISALFALNL 88

Query: 131 NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM----DSQGRIAE 186
           +P  A  FF+W G++ G+KHN  S+ ++   L  N   R A+ +  LM    DS      
Sbjct: 89  DPQTALAFFNWIGQKHGFKHNVQSHVSMLNILVPNGYLRIAENMRILMIKSTDSSENALF 148

Query: 187 MLEILEKMRRNLCKPDVF-------AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +LE+L  M R   + D F        Y  ++ +L+    +D    V+ EM  D+V  ++ 
Sbjct: 149 VLEMLRSMNR---RVDAFKFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIF 205

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
              T++ G CK G VV       ++ + G+ +D   Y  LI G      V  A  +   +
Sbjct: 206 TLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSM 265

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            + G   +   Y ++I G C  ++ D+A KLF    +D+  P   T   ++    ++GR 
Sbjct: 266 PNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRK 325

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNIL 418
                +  +M +                + ++     A  +   +  KG   SV  YN L
Sbjct: 326 TEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNAL 385

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G    AL +   M   N   N+ +++  I       +I +A    +K++E   
Sbjct: 386 IDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKL 445

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P+V  YN L  G CK G++ +A  L+   +      P E+ Y++ I  +C+ G  E+  
Sbjct: 446 QPNVVTYNILIHGQCKEGDLGSAYKLL-SLMNESGLVPDEWTYSVFIDTLCKRGLVEEAR 504

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
            +   + ++G   NEVI S +I G CK G + + R +   +     +   N+I Y+ ++ 
Sbjct: 505 SLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCV--PNSITYNSLID 562

Query: 599 EHMKKKT 605
            + K+K 
Sbjct: 563 GYCKEKN 569



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 118/475 (24%), Positives = 197/475 (41%), Gaps = 68/475 (14%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
           +KG   +  +YNAL     +  L  +A ++  LM+S                      I 
Sbjct: 372 EKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIH 431

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + + +L KM     +P+V  Y  +I     E +L +  ++   M +  +  D   Y   I
Sbjct: 432 KAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFI 491

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
             LCK G V     LF  +KE GI  +  IY  LI+G    GKV     LL  ++ +G  
Sbjct: 492 DTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCV 551

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            +   YNS+I G C+ K F +A  L ++ ++ D+ P   T   L+         DN    
Sbjct: 552 PNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILI---------DNLL-- 600

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLE 424
                                   K++    A D+F+++   G +  V IY   + A   
Sbjct: 601 ------------------------KDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCS 636

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G +K A  L  KM    +  +++ +++ I  +   G I  A     ++ E+   PS   
Sbjct: 637 HGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYT 696

Query: 485 YNCLTKGL--CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
           Y+CL K L   K  E+ ++  L     G VAS   +F       +  R  + E  +++  
Sbjct: 697 YSCLIKHLSNAKPKEVSSSSELSDLSSG-VAS--NDFS------NCWRRVDYEFTLDLFG 747

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +M + GC PN       I+G+CK G LE A ++F +++E+      N  +Y+ +L
Sbjct: 748 KMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKG--QSPNEDIYNSLL 800



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 106/457 (23%), Positives = 188/457 (41%), Gaps = 21/457 (4%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
           Q G   +  +Y +L     RN    AA+ +   M ++G                   R+ 
Sbjct: 232 QAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVD 291

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E L++  +M  + C P V  YT +I  L         L +++EM +   + +V  Y  LI
Sbjct: 292 EALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLI 351

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
             LC+        ++   M E G++     Y  LI+G   +G    A ++L  +  +   
Sbjct: 352 CSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCS 411

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            +   YN +I G CR K   KA  L    ++  L P+  T N L+    + G + + +KL
Sbjct: 412 PNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKL 471

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLE 424
           L+ M +            F   + K   +  A  +FE LK KG  ++  IY+ L+    +
Sbjct: 472 LSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCK 531

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
           +G+V    +L  KM       NS++++  I  + +  +  EA    + +I+    P+   
Sbjct: 532 VGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADT 591

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y  L   L K  E D A  +  D + +  S P  F Y   I   C  G  +    ++ +M
Sbjct: 592 YTILIDNLLKDDEFDQAHDMF-DQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKM 650

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
             +G  P+ ++ +  I    + G+++ A  +   + E
Sbjct: 651 NAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHE 687



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 174/422 (41%), Gaps = 38/422 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E    + K+ +     D F YT++I      +N+DA   ++  M       + ++Y
Sbjct: 218 GNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSY 277

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G C+  RV    +LF +M E+        Y V+I  L   G+  +A ++ K++ +
Sbjct: 278 TNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTE 337

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              + ++  Y  +I  LC    FD A K+    ++  L P   T N L+    + G   +
Sbjct: 338 KHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSAS 397

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
             ++L+ ME    S  A                                    YN L+  
Sbjct: 398 ALEILSLMESNNCSPNA----------------------------------RTYNELILG 423

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
                 + KA+ L  KM    L+ N ++++I I    + GD+  A +  + + E   VP 
Sbjct: 424 FCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPD 483

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
              Y+     LCK G ++ A  L  + L        E  Y+  I   C+ G+      +L
Sbjct: 484 EWTYSVFIDTLCKRGLVEEARSLF-ESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLL 542

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
           ++M   GC PN +  +++I G CK    +EAR +   + +R +   A+T     ILI+++
Sbjct: 543 DKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYT---ILIDNL 599

Query: 602 KK 603
            K
Sbjct: 600 LK 601


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/473 (23%), Positives = 216/473 (45%), Gaps = 24/473 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           K+ G   N  +YN L Y L ++   R A +V ++M   G                    +
Sbjct: 231 KEAGIVLNAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDV 290

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
             +L +L +M  +  KP+V++YT  IRVL   R  D   R+  EM+ +  + DV+ +  L
Sbjct: 291 ETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVL 350

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC  GR+    ++F +MK++    DR  Y  L++     G+     ++   +   GY
Sbjct: 351 IQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGY 410

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  Y ++I  LC+V +  +A ++F+   Q  + P+  + N L+    +  R  +  +
Sbjct: 411 NDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALE 470

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
           L   M+             F    GK    + A+  +E +K KG    V   N ++  L 
Sbjct: 471 LFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLA 530

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G +  A  +F +++ + +  +++++++ I+C  ++    EA +    +IE + VP V 
Sbjct: 531 KSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVL 590

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
             N L   L K G  D A  +    L  +   PT+  Y   +  + R G+ ++++ +L E
Sbjct: 591 VVNSLIDTLYKAGRGDEAWQIFYQ-LKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEE 649

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIVY 593
           M     PPN +  + I+  +CK+G + +A  +  ++  +     L+  NT++Y
Sbjct: 650 MYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIY 702



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 109/456 (23%), Positives = 195/456 (42%), Gaps = 26/456 (5%)

Query: 144 KQKGYKHN-FASYNALA----YCLSRNNLFRAADQVPEL---------MDSQGRIAEMLE 189
           K  GY H  F +Y   +      + R  L ++   VP++         +   GR+     
Sbjct: 481 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKR 540

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +  +++     PD   YT MI+  +     D  ++++ +M ++    DV+   +LI  L 
Sbjct: 541 VFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLY 600

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K GR     ++F ++KE  +      Y  L+ GL  EGKV +   LL+++  S Y  +L 
Sbjct: 601 KAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 660

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            YN+I+  LC+    + A  +          PD S+ N ++    +  R +  F +  QM
Sbjct: 661 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM 720

Query: 370 EKLKF----SVAADLEKFFEFLVGKEERIMMALDVFEE--LKGKGYSSVPIYNILMGALL 423
           +K+      ++   L  F +  + KE     AL + +E  L+    +     + LM  +L
Sbjct: 721 KKVLIPDYATLCTILPSFVKIGLMKE-----ALHIIKEYFLQPGSKTDRSSCHSLMEGIL 775

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           +    +K++     +    + ++       I+   +    LEA E   K           
Sbjct: 776 KKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTG 835

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           +YN L  GL     ID A  L  + +  +  GP EF Y L +  + +S   E++++V  E
Sbjct: 836 SYNSLICGLVDENLIDIAEGLFAE-MKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEE 894

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           M ++G     V  + IISG+ K   LE+A  ++ NL
Sbjct: 895 MHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNL 930



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 110/511 (21%), Positives = 219/511 (42%), Gaps = 64/511 (12%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           RR   D++   L+  + P  A + F  A ++    H  AS N +                
Sbjct: 133 RRAAEDVI-HALRSADGPAEALERFRSAARRPRVVHTTASCNYML--------------- 176

Query: 175 PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
            +LM   GR+ +M E+ + M+R + K +V  + A+   L  E  L +       MK+  +
Sbjct: 177 -DLMRDHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGI 235

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
             +   Y  L+  L K G      E+++ M  +G++     Y VL+        V     
Sbjct: 236 VLNAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLW 295

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           LL+++   G + ++  Y   I  L + ++FD+AY++      +   PD  T   L+    
Sbjct: 296 LLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLC 355

Query: 355 EMGRMDNFFKLLAQMEKL-----KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY 409
           + GR+ +   +  +M+K      + +    L+KF +   G+ + +M   +++  +K  GY
Sbjct: 356 DAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFAD--NGESQSVM---EIWNAMKADGY 410

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMR------------------------GLNLE 444
           + +V  Y  ++ AL ++G V +AL +F +M+                        G  LE
Sbjct: 411 NDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALE 470

Query: 445 V-----------NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           +           N  +  + I  + +SG+ ++A + +  +     VP V A N +  GL 
Sbjct: 471 LFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLA 530

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           K G +  A  +  + L  +   P    Y + I    ++ + ++ +++  +M +  C P+ 
Sbjct: 531 KSGRLGMAKRVFHE-LKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDV 589

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           ++ +++I  + K G  +EA ++F  L+E  L
Sbjct: 590 LVVNSLIDTLYKAGRGDEAWQIFYQLKEMNL 620



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 113/529 (21%), Positives = 200/529 (37%), Gaps = 88/529 (16%)

Query: 145  QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
               Y  N  +YN +  CL +N                G + + L++L  M    C PD+ 
Sbjct: 652  HSNYPPNLITYNTILDCLCKN----------------GAVNDALDMLYSMTTKGCIPDLS 695

Query: 205  AYTAMIRVLAAERNLDACLRVWEEMKKDLV------------------------------ 234
            +Y  +I  L  E   +    ++ +MKK L+                              
Sbjct: 696  SYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKEYF 755

Query: 235  -----EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
                 + D  +  +L+ G+ K     +  E    +  +GI +D      LI+ L  + K 
Sbjct: 756  LQPGSKTDRSSCHSLMEGILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKA 815

Query: 290  GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
             +A +L+K     G     G YNS+I GL      D A  LF    +    PD  T N L
Sbjct: 816  LEAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLL 875

Query: 350  LVCCAEMGRMDNFFKLLAQMEKLKF-SVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
            L    +  R++   K+  +M +  + S           LV K  R+  A+D++  L  +G
Sbjct: 876  LDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLV-KSRRLEQAIDLYYNLMSQG 934

Query: 409  YSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
            +S  P  Y  L+  LL+ G ++ A  LF +M     + N   ++I +  H  +G+  + C
Sbjct: 935  FSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVC 994

Query: 468  ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR------------------DCL 509
                 +++    P + +Y  +   LCK G+++  +   R                  D L
Sbjct: 995  HLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGL 1054

Query: 510  GNV----------------ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
            G                     P  + Y   ILH+ ++G+A +  ++  E+  +G  PN 
Sbjct: 1055 GKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNV 1114

Query: 554  VICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
               +A+I G    G+ + A   +  +     L  ++T    E++   +K
Sbjct: 1115 FTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTCHIHELMKTFLK 1163



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 134/317 (42%), Gaps = 24/317 (7%)

Query: 144  KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------PE------LMDSQG---RI 184
            K  G      SYN+L   L   NL   A+ +          P+      L+D+ G   RI
Sbjct: 826  KSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRI 885

Query: 185  AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
             EML++ E+M R   +     Y  +I  L   R L+  + ++  +           Y  L
Sbjct: 886  EEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPL 945

Query: 245  IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
            + GL K GR+     LF EM E G   +  IY +L+ G    G   K C L +D+VD G 
Sbjct: 946  LDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGI 1005

Query: 305  RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
              D+  Y  II  LC+  Q +     F   ++  L PD  T N L+    +  R++    
Sbjct: 1006 NPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVS 1065

Query: 365  LLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
            L  +M+K    +  +L  +   +  +GK  +   A  ++EEL  KG+  +V  YN L+  
Sbjct: 1066 LFNEMQKK--GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRG 1123

Query: 422  LLEIGEVKKALYLFGKM 438
                G    A   +G+M
Sbjct: 1124 YSVSGSTDSAYAAYGRM 1140


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 136/555 (24%), Positives = 230/555 (41%), Gaps = 101/555 (18%)

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ 181
           VA VL+       A  FF WAG+Q G++H+  +YN L   L     +     + E M   
Sbjct: 89  VAAVLRSLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKA 148

Query: 182 G-------------------RIAEMLEILEKMRRNLCKPDVFAY---------------- 206
           G                   R  + +   E M+R  CKPD+  +                
Sbjct: 149 GIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKA 208

Query: 207 --------------------TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
                               TAM+R L   + +     V+ +M+K     D +AY T+I 
Sbjct: 209 FEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMID 268

Query: 247 G-----------------------------------LCKGGRVVRGHELFREMKENGILI 271
           G                                   LCK G + R  ELFR M  +G   
Sbjct: 269 GLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRP 328

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           +  IY  LI G    G++ +AC L  ++V++GYR D+  +  +I GLC+   F++A K F
Sbjct: 329 NSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSF 388

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG-- 389
           E  ++    P+  T   ++   +++GR+ N F+++  M  +      D   +   L G  
Sbjct: 389 EEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGM--IAHGCFPDSVTYICLLDGFC 446

Query: 390 KEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKAL-YLFGKMRGLNLEVN- 446
           K  R+  A  + +EL K     ++ +Y+ L+  L + G V+K L  LF + +     ++ 
Sbjct: 447 KLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDP 506

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE--IDAAMML 504
            L  SI +    ++G + EAC    +++     P    YN L  GLC+  E  ++ A  L
Sbjct: 507 GLCCSIIVGL-CKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFAL 565

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
           + D L  V   P    Y    + +C+ GE ++ +++L E +  G   + V  +A+ +G+C
Sbjct: 566 LHD-LEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLC 624

Query: 565 KHGTLEEARKVFTNL 579
             G ++ A  +F  +
Sbjct: 625 YQGQVDRAVSLFQEM 639



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 188/393 (47%), Gaps = 14/393 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+A    I++ M  + C PD   Y  ++        LD   ++ +E+ K     ++  Y
Sbjct: 414 GRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLY 473

Query: 242 VTLIMGLCKGGRVVRG-HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
            +L+ GLC GG V +   +LF + K     +D  +   +I GL   G++ +AC + + +V
Sbjct: 474 SSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMV 533

Query: 301 DSGYRADLGIYNSIIGGLCRVKQ--FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
             G + D   YN +I GLCR ++   ++A+ L     +    PD  T  PL +   ++G 
Sbjct: 534 SEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGE 593

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIY 415
           +D   K+L +     ++  AD+  +     G   + ++  A+ +F+E+ +  G      Y
Sbjct: 594 VDRAVKMLEEASSRGWN--ADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAY 651

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             ++  L+++ +++ A   F +M G   +    +++  +Q    +G++ EA      ++ 
Sbjct: 652 CCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLA 711

Query: 476 MSQ-VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVCRSG 532
             + V SV  Y+ L  G CK  ++DAA+ L  D +  GNV   PT    A     + RSG
Sbjct: 712 RGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNV---PTAVTSASLFDGLVRSG 768

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
           + EK  E+L EM   G PP+    +AI+ G+ K
Sbjct: 769 KTEKAQELLQEMAAGGSPPHAATFTAILDGLRK 801



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 185/424 (43%), Gaps = 24/424 (5%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GR+ E   + ++M     +PDV  +T MI  L    N +   + +EEM +   + +V+ 
Sbjct: 343 SGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVT 402

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I GL K GRV     + + M  +G   D   Y  L++G    G++ +A  LL +L 
Sbjct: 403 YTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELD 462

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYK-LFEVTVQDDLAPDFSTVNPLLVCC-----A 354
                 +L +Y+S++ GLC     +K    LFE   Q   A +  T++P L C       
Sbjct: 463 KCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFE---QSKAAAE--TLDPGLCCSIIVGLC 517

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG----KEERIMMALDVFEELKGKGY- 409
           + GR+D   ++  +M  +      D   +   + G    +E R+  A  +  +L+  GY 
Sbjct: 518 KTGRLDEACRIFQRM--VSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYL 575

Query: 410 SSVPIYNILMGALLEIGEVKKALYLF--GKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
                Y  L   L +IGEV +A+ +      RG N +V + +      C+   G +  A 
Sbjct: 576 PDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCY--QGQVDRAV 633

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
               +++     P  AAY C+  GL K+ +++ A     + +G     PT   Y   +  
Sbjct: 634 SLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGK-GQKPTVATYTALVQA 692

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEV-ICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
           +C +G  ++       M   G     V I  A+I G CK   ++ A K+F ++  R  + 
Sbjct: 693 LCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVP 752

Query: 587 EANT 590
            A T
Sbjct: 753 TAVT 756



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 185/407 (45%), Gaps = 15/407 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G   E L++L+ M    C P    Y  ++  L     L+    ++  M       + + Y
Sbjct: 274 GHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIY 333

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI G  K GR+     LF EM E G   D   + V+I+GL   G   +A    ++++ 
Sbjct: 334 TSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMR 393

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + ++  Y +II GL ++ +   A+++ +  +     PD  T   LL    ++GR+D 
Sbjct: 394 GGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDE 453

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFL-----VGKEERIMMALDVFEELKGKGYSSVP--I 414
             +LL +++K   S + +L+ +   +      G  E+ +   D+FE+ K    +  P   
Sbjct: 454 AAQLLDELDKC--SSSPNLQLYSSLVNGLCDGGSVEKTLD--DLFEQSKAAAETLDPGLC 509

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNK 472
            +I++G L + G + +A  +F +M     + ++ +++I I   C      +  A    + 
Sbjct: 510 CSIIVG-LCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHD 568

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           + ++  +P    Y  L  GLCKIGE+D A+ ++ +   +         Y      +C  G
Sbjct: 569 LEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEA-SSRGWNADVVAYTALCTGLCYQG 627

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           + ++ + +  EM ++G  P+      II+G+ K   LE+A K F  +
Sbjct: 628 QVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEM 674



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 112/270 (41%), Gaps = 25/270 (9%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
            +G K +  +YN L    C SR N                R+     +L  + +    PD
Sbjct: 534 SEGCKPDATTYNILINGLCRSREN----------------RVERAFALLHDLEKVGYLPD 577

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
              YT +   L     +D  +++ EE       ADV+AY  L  GLC  G+V R   LF+
Sbjct: 578 AVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQ 637

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EM   G   D A Y  +I GL+   K+  AC    +++  G +  +  Y +++  LC   
Sbjct: 638 EMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAG 697

Query: 323 QFDKAYKLFE-VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-EKLKFSVAADL 380
             D+A+  FE +  + +L       + L+    +  ++D   KL   M  +     A   
Sbjct: 698 NVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTS 757

Query: 381 EKFFEFLV--GKEERIMMALDVFEELKGKG 408
              F+ LV  GK E+   A ++ +E+   G
Sbjct: 758 ASLFDGLVRSGKTEK---AQELLQEMAAGG 784



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 14/179 (7%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           +A AYC   N L +    V +L D+     EM+   +K       P V  YTA+++ L  
Sbjct: 647 DAAAYCCIINGLIK----VKKLEDACKFFDEMIGKGQK-------PTVATYTALVQALCH 695

Query: 216 ERNLDACLRVWEEM--KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
             N+D     +E M  + +LV   VM Y  LI G CK  +V    +LF +M   G +   
Sbjct: 696 AGNVDEAFHRFESMLARGELV-GSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTA 754

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
                L +GLV  GK  KA +LL+++   G       + +I+ GL +  +  K  KL +
Sbjct: 755 VTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQ 813



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 63/165 (38%), Gaps = 18/165 (10%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKM 194
           A KFF      KG K   A+Y AL   L                   G + E     E M
Sbjct: 667 ACKFFDEM-IGKGQKPTVATYTALVQALCH----------------AGNVDEAFHRFESM 709

Query: 195 -RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
             R      V  Y A+I        +DA L+++E+M         +   +L  GL + G+
Sbjct: 710 LARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGK 769

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
             +  EL +EM   G     A +  +++GL    + GK   L+++
Sbjct: 770 TEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 126/502 (25%), Positives = 226/502 (45%), Gaps = 24/502 (4%)

Query: 101 FQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALA 159
           F+WGP     L  L  RV   LV EV+K +    +  +FF WA K++ Y+H+ ++Y AL 
Sbjct: 38  FKWGPDAEKALEVLMLRVDHWLVREVMKTDVGVNVKMQFFRWAAKRRNYEHDTSTYMALI 97

Query: 160 YCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRN-LCKPDVFAYTAMIRVLAAERN 218
           +CL             E+++  G   EM +++++M RN +C       + ++R+L   + 
Sbjct: 98  HCL-------------EVVEQYG---EMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKM 141

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG-ILIDRAIYG 277
           +   + ++ ++K    +    AY ++I+ L   G+  + H+L+ EM   G    D   Y 
Sbjct: 142 VRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYS 201

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
            LI      G+   A  LL ++ + G +    IY  +I    +      A  LFE     
Sbjct: 202 ALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQ 261

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA 397
              PD  T   L+    + GR+D  +    +M++                +GK  R+  A
Sbjct: 262 YCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDA 321

Query: 398 LDVFEELKG-KGYSSVPIYNILMGALLEI-GEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           + +F+E++  +   SV  YN ++ AL E      +    F +M+   +  +S ++SI I 
Sbjct: 322 MKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILID 381

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
              ++  + +A     ++ E    P  AAY  L   L K    D A  L ++   N  S 
Sbjct: 382 GFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSS 441

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
                YA+ I H+ ++G  +  I + +EM + GC P+    +A++SG+ + G L+EA   
Sbjct: 442 SARV-YAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALST 500

Query: 576 FTNLRERKLLTEANTIVYDEIL 597
              ++E   + + N+  Y+ IL
Sbjct: 501 MRRMQEHGCIPDINS--YNIIL 520



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 108/492 (21%), Positives = 206/492 (41%), Gaps = 36/492 (7%)

Query: 117 VTPDLVAEVLKVENNPTLASK--FFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           VTP  +++V+++  N  +  +     +  K +  +    +YN++   L     +    Q+
Sbjct: 124 VTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQL 183

Query: 175 PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
              M ++G                C PD   Y+A+I         D+ +++  EMK+  +
Sbjct: 184 YNEMSTEGH---------------CFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGM 228

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           +     Y  LI    K         LF EM+      D   Y  LI GL   G++ +A  
Sbjct: 229 QPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYH 288

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
              ++   G R D    N++I  L +  + D A KLF+        P   T N ++    
Sbjct: 289 FFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALF 348

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSS 411
           E     +  ++ +  E++K S  +     +  L+    K  R+  A+ + EE+  KG+  
Sbjct: 349 ESKSRAS--EVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 406

Query: 412 VP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            P  Y  L+ AL +      A  LF +++      ++  +++ I+   ++G + +A    
Sbjct: 407 CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMF 466

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR-----DCLGNVASGPTEFKYALTI 525
           +++ ++   P V AYN L  GL + G +D A+  +R      C+ ++ S      Y + +
Sbjct: 467 DEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINS------YNIIL 520

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
             + ++G   + +E+L+ M Q    P+ V  + ++  +   G  EEA K+   +    L 
Sbjct: 521 NGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEM--NTLG 578

Query: 586 TEANTIVYDEIL 597
            E + I Y  IL
Sbjct: 579 FEYDLITYSSIL 590



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 11/175 (6%)

Query: 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTA 208
           K N  S +A  Y +   +L +A           GR+ + + + ++M +  C PDV+AY A
Sbjct: 435 KENCGSSSARVYAVMIKHLGKA-----------GRLDDAINMFDEMNKLGCAPDVYAYNA 483

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           ++  LA    LD  L     M++     D+ +Y  ++ GL K G   R  E+   MK++ 
Sbjct: 484 LMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQST 543

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +  D   Y  ++  L   G   +A  L+K++   G+  DL  Y+SI+  + +V  
Sbjct: 544 VRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKVDH 598


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/430 (25%), Positives = 200/430 (46%), Gaps = 6/430 (1%)

Query: 166 NLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV 225
           N+F  +  +  L+  + +  E  ++LE+M    C PDVFA+  +++  A   N++    V
Sbjct: 9   NVFTYSSIIKSLV-KEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREV 67

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285
           ++ M +   + D ++Y  LI GL K G++    ++  EM   G       Y  L+  L  
Sbjct: 68  YQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAK 127

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
             +V  A  L  +++  G+  D  ++  +I GLC+  +   A + F+   +    P+   
Sbjct: 128 ARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPV 187

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEE 403
            N LL      G+++    L A+M+    S + D+  +   L  V K  R+     +FE 
Sbjct: 188 YNVLLHGLCSSGQLEQANTLFAEMK--SHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEA 245

Query: 404 LKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
           ++  GY  +V  ++ L+  L   GE++KAL +FG M     + N  +++  I     +  
Sbjct: 246 MRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEK 305

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
           +++A E   K+ +    P   AYN L  G CK G +D A  L R+  G     PT   + 
Sbjct: 306 VIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFN 365

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             I   C+ G+  +  E++ EM  +G   +      +I+G+ +   L+EA +V+  +RE+
Sbjct: 366 TLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREK 425

Query: 583 KLLTEANTIV 592
           K L +  + V
Sbjct: 426 KFLLDPVSCV 435



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/462 (22%), Positives = 208/462 (45%), Gaps = 63/462 (13%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           + GYK +  SY+ L + L++                 G++ E L+IL +M      P + 
Sbjct: 73  ESGYKPDNVSYHILIHGLAK----------------IGKLDESLKILSEMVMRGQTPSMQ 116

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
           AY++++R LA  R +D    +++EM +     D + +  LI+GLC+ G+V    E F++M
Sbjct: 117 AYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQM 176

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            ++G   +  +Y VL+ GL   G++ +A  L  ++       D+  YN+++  +C+ ++ 
Sbjct: 177 PKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRV 236

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           ++  KLFE        P+  T + L+      G ++   ++   M  L+     +   + 
Sbjct: 237 EEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSM--LEAGCKPNKYTYT 294

Query: 385 EFLVG--KEERIMMALDVFEELKGKGYSSVP----IYNILMGALLEIGEVKKALYLFGKM 438
             + G  + E+++ A ++FE++     + +P     YN L+    + G + +A  L+ +M
Sbjct: 295 TLISGLCRAEKVIQARELFEKMT---QACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREM 351

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
            G                    G  L+              P++  +N L  G CK+G++
Sbjct: 352 SG--------------------GAGLQ--------------PTIVTFNTLIDGFCKLGKL 377

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
             A  LV + +G          Y + I  + R+ + ++ +EV  +M ++    + V C +
Sbjct: 378 GRANELVAE-MGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVS 436

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTI-VYDEILIE 599
            + G+CK G +++A  VF   R+   +    T  +  E LI+
Sbjct: 437 FVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIK 478



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 161/331 (48%), Gaps = 12/331 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ +  E  ++M ++ C+P+V  Y  ++  L +   L+    ++ EMK      DV+ Y
Sbjct: 164 GKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTY 223

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+  +CK  RV  G +LF  M+  G + +   +  LI GL   G++ KA ++   +++
Sbjct: 224 NTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLE 283

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G + +   Y ++I GLCR ++  +A +LFE   Q  + PD    N L+    + G MD 
Sbjct: 284 AGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDE 343

Query: 362 FFKLLAQMEKLKFSVAADLE----KFFEFLVG--KEERIMMALDVFEELKGKGYSSVP-I 414
             KL  +M     S  A L+     F   + G  K  ++  A ++  E+  KG ++    
Sbjct: 344 AEKLYREM-----SGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCT 398

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y IL+  L    ++ +AL ++ +MR     ++ +S    +    ++G+I +A        
Sbjct: 399 YRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATR 458

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           +   VP+   +  L++ L K+G ++ A  L+
Sbjct: 459 KSGAVPNPETFRILSESLIKLGRVEDAQKLM 489


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 138/516 (26%), Positives = 233/516 (45%), Gaps = 33/516 (6%)

Query: 91  FITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKV-----ENNPTLASKFFHWAGKQ 145
           F+  A  KN   +  + V E   L+ V  D     + +     +NN   A KFF  A K 
Sbjct: 214 FLLTALVKNDMIYEAREVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEA-KS 272

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           +G K + A+Y+ +     +N            +D +        +L+ MR     P    
Sbjct: 273 RGVKLDAAAYSIVIQAFCKN------------LDVELACG----LLKDMRDKGWVPSEGT 316

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           +T++I     + N+   LR+ +EM    V+ +V+   TL+ G CK  ++V   E F +M 
Sbjct: 317 FTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMN 376

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           ENG   +R  Y VLIE     G + KA DL   + +      + I NS+I G  +V+  +
Sbjct: 377 ENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESRE 436

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +A KLF+  V  D+A  F T N LL    + G+M     L  +M  L   +A     +  
Sbjct: 437 EASKLFDEAVACDIANIF-TYNSLLSWLCKEGKMSEATTLWQKM--LDKGLAPTKVSYNS 493

Query: 386 FLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            ++G  ++  + MA  VF ++   G   +V  Y+ILM    + G+ + A Y+F +M   N
Sbjct: 494 MILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDEN 553

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           +  +  +++I I    + G   EA +   K +E   VP    YN +  G  K G + +A+
Sbjct: 554 IVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSAL 613

Query: 503 MLVRD-CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
              R+ C   V+  P    Y   I   C++   +  +++ NEM  +G   +     A+I 
Sbjct: 614 TAYREMCESGVS--PNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALID 671

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           G CK   +E A  +F+ L +  L    N+++Y+ ++
Sbjct: 672 GFCKKQDIETASWLFSELLDGGL--SPNSVIYNSLI 705



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 109/474 (22%), Positives = 206/474 (43%), Gaps = 45/474 (9%)

Query: 181 QGRIAEMLEILEKMR-RNLCKPDVFAYTAMIR-VLAAERNLDACLRVWEEMKKDLVEADV 238
            G +A+  ++  +M+ +N+C P VF   ++IR  L  E   +A     E +  D+  A++
Sbjct: 397 NGNMAKAYDLYTQMKNKNIC-PTVFIVNSLIRGFLKVESREEASKLFDEAVACDI--ANI 453

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
             Y +L+  LCK G++     L+++M + G+   +  Y  +I G   +G +  A  +  D
Sbjct: 454 FTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSD 513

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           ++D G + ++  Y+ ++ G  +    + A+ +F+  V +++ P   T N  +    ++GR
Sbjct: 514 MLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGR 573

Query: 359 MDNFFKLLAQ-MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYN 416
                 +L + +EK    V        +  + KE  +  AL  + E+   G S +V  Y 
Sbjct: 574 TSEAQDMLKKFVEKGFVPVCLTYNSIMDGFI-KEGSVSSALTAYREMCESGVSPNVITYT 632

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+    +      AL +  +MR   LE++  ++   I    +  DI  A    +++++ 
Sbjct: 633 TLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDG 692

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN------------------------- 511
              P+   YN L  G   +  ++AA+ L +  LG                          
Sbjct: 693 GLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLA 752

Query: 512 -------VASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
                   A G  P    Y + I  +C  G+ E   ++L EM ++   PN  I +A+I+G
Sbjct: 753 LDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAG 812

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADL-VLSGLKF 615
             K G L+EA ++   + ++ L    N   YD ++   +K   + L  L  LKF
Sbjct: 813 HFKAGNLQEAFRLHNEMLDKGL--TPNDTTYDILINGKIKGGNSALKSLLSLKF 864


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/451 (24%), Positives = 210/451 (46%), Gaps = 54/451 (11%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           + GYK +  ++N L + L  +N                + +E + ++++M    C+PD+F
Sbjct: 179 EMGYKPDTVTFNTLIHGLFLHN----------------KASEAVALIDRMVARGCQPDLF 222

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  ++  L    ++D  L + ++M+K  +EA+V+ Y T+I GLCK   +    +LF +M
Sbjct: 223 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKM 282

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           +  GI  D   Y  LI  L   G+   A  LL D+++     ++  +NS+I    +  + 
Sbjct: 283 ETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKL 342

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +A KLF+  +Q  + P+  T N L+       R+D                  + ++ F
Sbjct: 343 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD------------------EAQQIF 384

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
             +V K+                    V  YN L+    +   V++ + LF +M    L 
Sbjct: 385 TLMVSKD----------------CLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLV 428

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            N+++++  IQ   ++GD   A +   K++     P +  Y+ L  GLCK G+++ A ++
Sbjct: 429 GNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA-LV 487

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
           V + L      P  + Y + I  +C++G+ E   ++   ++ +G  PN +I + +ISG C
Sbjct: 488 VFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFC 547

Query: 565 KHGTLEEARKVFTNLRERKLLTEA---NTIV 592
           + G  EEA  +F  ++E   L ++   NT++
Sbjct: 548 RKGLKEEADALFREMKEDGTLPDSGCYNTLI 578



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/479 (23%), Positives = 211/479 (44%), Gaps = 54/479 (11%)

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221
           LSRN L            S+ ++ + + +  +M ++   P +  ++ ++  +A     D 
Sbjct: 52  LSRNGL------------SELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDV 99

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
            + + E+M+   +  +   Y  L+   C+  ++     +  +M + G   D      L+ 
Sbjct: 100 VISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLN 159

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
           G     ++ +A  L+  +V+ GY+ D   +N++I GL    +  +A  L +  V     P
Sbjct: 160 GYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQP 219

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALD 399
           D  T   ++    + G +D    LL +MEK K  + A++  +   + G  K + +  A D
Sbjct: 220 DLFTYGTVVNGLCKRGDIDLALSLLKKMEKGK--IEANVVIYNTIIDGLCKYKHMDDAFD 277

Query: 400 VFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV 458
           +F +++ KG    V  YN L+  L   G    A  L   M    +  N ++F+  I    
Sbjct: 278 LFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFA 337

Query: 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVA 513
           + G ++EA +  +++I+ S  P++  YN L  G C    +D A     +M+ +DCL +V 
Sbjct: 338 KEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVV 397

Query: 514 SGPTEFK-----------------------------YALTILHVCRSGEAEKIIEVLNEM 544
           +  T  K                             Y   I  + ++G+ +   ++  +M
Sbjct: 398 TYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 457

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
             +G PP+ +  S ++ G+CK+G LE+A  VF  L++ K+  E N   Y+ I+IE M K
Sbjct: 458 VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM--EPNIYTYN-IMIEGMCK 513



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 155/340 (45%), Gaps = 36/340 (10%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------------PELMDS---QGRI 184
           + KG K +  +YN+L  CL     +  A ++                  L+D+   +G++
Sbjct: 283 ETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKL 342

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  ++ ++M +    P++  Y ++I        LD   +++  M       DV+ Y TL
Sbjct: 343 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 402

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK  RV  G ELFREM + G++ +   Y  LI+GL   G    A  + K +V  G 
Sbjct: 403 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 462

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  Y+ ++ GLC+  + +KA  +FE   +  + P+  T N ++    + G++++ + 
Sbjct: 463 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWD 522

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG------KEERIMMALDVFEELKGKGYSSVP---IY 415
           L   +  LK  V  ++  +   + G      KEE    A  +F E+K  G  ++P    Y
Sbjct: 523 LFCSLS-LK-GVKPNVIIYTTMISGFCRKGLKEE----ADALFREMKEDG--TLPDSGCY 574

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           N L+ A L  G+   +  L  +MR      ++ + S+ I 
Sbjct: 575 NTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 614



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 19/193 (9%)

Query: 145 QKGYKHNFASYNAL-------AYCLSRNNLFR--AADQVPE-------LMDS---QGRIA 185
           Q+G   N  +YN L         C     +F+   +D VP        L+D     G++ 
Sbjct: 424 QRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 483

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + L + E ++++  +P+++ Y  MI  +     ++    ++  +    V+ +V+ Y T+I
Sbjct: 484 KALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 543

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G C+ G       LFREMKE+G L D   Y  LI   + +G    + +L+K++   G+ 
Sbjct: 544 SGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFV 603

Query: 306 ADLGIYNSIIGGL 318
            D    + +I  L
Sbjct: 604 GDASTISMVINML 616


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 191/418 (45%), Gaps = 35/418 (8%)

Query: 170 AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
           A D V + +   G +A+ LE+ E M+   C P +  Y  +I            L +++ M
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 230 KKD-LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           K++  VE D   Y TLI GLC  G      +L  EM++  I  +   Y  +I+ LV E K
Sbjct: 72  KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAK 131

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
             ++  +L++++ +G   D+  +N ++ G  R    +KA ++++  V+    PD  + + 
Sbjct: 132 PEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHI 191

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
           L+   A++G++D   K+L++M                                  ++  G
Sbjct: 192 LIHGLAKIGKLDESLKILSEM---------------------------------AMRAAG 218

Query: 409 Y-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
           Y  +V  ++ L+  L   GE++KAL +FG M     + N  +++  I     +  +++A 
Sbjct: 219 YVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQAR 278

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
           E   K+ +    P   AYN L  G CK G +D A  L R+  G     PT   +   I  
Sbjct: 279 ELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDG 338

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
            C+ G+  +  E++ EM  +G   +      +I+G+ +   L+EA +V+  +RE+K L
Sbjct: 339 FCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFL 396



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 171/369 (46%), Gaps = 12/369 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G      ++L +MR      +VF Y+++I+ L  E   +   +V EEM       DV 
Sbjct: 93  SSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVF 152

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           A+  ++ G  +   + +  E+++ M E+G   D   Y +LI GL   GK+ ++  +L ++
Sbjct: 153 AFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEM 212

Query: 300 V--DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
               +GY  ++  ++++I GLCR  + +KA ++F   ++    P+  T   L+   A + 
Sbjct: 213 AMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLI---AGLC 269

Query: 358 RMDNFFKLLAQMEKL-KFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKG--YSSV 412
           R +   +     EK+ +  +  D   +   + G  +R  M  A  ++ E+ G      ++
Sbjct: 270 RAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTI 329

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             +N L+    ++G++ +A  L  +M    L  ++ ++ I I     +  + EA E + +
Sbjct: 330 VTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQ 389

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA-SGPTEFK-YALTILHVCR 530
           + E   +    +      GLCK G ID A  +      + A   P  F+  + +++ + R
Sbjct: 390 MREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGR 449

Query: 531 SGEAEKIIE 539
             +A+K++E
Sbjct: 450 VEDAQKLME 458



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 111/247 (44%), Gaps = 20/247 (8%)

Query: 140 HWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG----------------- 182
             A +  GY  N  +++ L + L R      A +V   M   G                 
Sbjct: 211 EMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCR 270

Query: 183 --RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVM 239
             ++ +  E+ EKM +    PD  AY ++I       ++D   +++ EM     ++  ++
Sbjct: 271 AEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIV 330

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            + TLI G CK G++ R +EL  EM   G+  D   Y +LI GL    K+ +A ++ K +
Sbjct: 331 TFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQM 390

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            +  +  D     S +GGLC+    D+AY +FE T +    P+  T   L     ++GR+
Sbjct: 391 REKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRV 450

Query: 360 DNFFKLL 366
           ++  KL+
Sbjct: 451 EDAQKLM 457


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 122/508 (24%), Positives = 220/508 (43%), Gaps = 54/508 (10%)

Query: 151 NFASYNALAYCLSRNN-------LFRAA--DQVP----------ELMDSQGRIAEMLEIL 191
           +F SYNA+   L+R +       L+R    D+VP            +   GR  + L +L
Sbjct: 144 SFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRARDALALL 203

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
             M R+ C PD   Y  +I  L A+  +     + +EM      ADV  +  +++GLC  
Sbjct: 204 RGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGL 263

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGL---------------------------- 283
           G V     L   M  +G       YG L+ GL                            
Sbjct: 264 GHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNTVI 323

Query: 284 ---VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
              + EGK+ +A +L + +   G   D+  YN ++ GLC++ +   A ++ +   +   A
Sbjct: 324 RGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCA 383

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400
           P+  T + LL      G  D+   +L QM    FS+ +       + +GK+ ++  A+ +
Sbjct: 384 PNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRL 443

Query: 401 FEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
            +E+K +G    +  YN ++  L    ++ +A ++FG +    +  N ++++  I   + 
Sbjct: 444 VQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLH 503

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           SG   E     N+++       V +YN L K LCK G +D +MML+ + +      P  F
Sbjct: 504 SGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTK-GIKPNNF 562

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            Y + I  +C++G+    +E+  EM  +G  P+ V  + +I+G+CK G    A  +   L
Sbjct: 563 SYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKL 622

Query: 580 RERKLLTEANTIVYDEILIEHMKKKTAD 607
               +    + + Y+ ++  H K +  D
Sbjct: 623 PNENV--HPDIVTYNILISWHCKVRLLD 648



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 162/374 (43%), Gaps = 35/374 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G++A   E+ E M    C PDV  Y  ++  L       + +R+ +EM++     +++
Sbjct: 328 AEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIV 387

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TL+   C+ G       +  +M   G  ++   Y  +I  L  +GK+ +A  L++++
Sbjct: 388 TYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEM 447

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G + D+  YN+II  LC   Q D+A  +F   +++ +  +  T N L+      GR 
Sbjct: 448 KSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRW 507

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
               +L  +M                 L G        LDV              YN L+
Sbjct: 508 QEGLRLANEM----------------VLHG------CPLDVVS------------YNGLI 533

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            AL + G V +++ L  +M    ++ N+ S+++ I    ++G + +A E   +++     
Sbjct: 534 KALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLT 593

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P +  YN L  GLCK+G   AA+ L+   L N    P    Y + I   C+    +    
Sbjct: 594 PDIVTYNTLINGLCKVGWTHAALNLLEK-LPNENVHPDIVTYNILISWHCKVRLLDDASM 652

Query: 540 VLNEMTQEGCPPNE 553
           +L++    G  PNE
Sbjct: 653 LLDKAVSGGIVPNE 666



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 175/413 (42%), Gaps = 46/413 (11%)

Query: 188 LEILEKM-RRNLCKPDVFAYTAMIRVLA-AERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           L +L++M RR    P   +Y A++  LA A+ + DA L ++  M +D V      +    
Sbjct: 129 LHLLDQMPRRFAVTPSFRSYNAVLSTLARADCHADALL-LYRRMLRDRVPPTTFTFGVAA 187

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
             LC+ GR      L R M  +G + D  +Y  +I  LV +G V +A  LL +++  G  
Sbjct: 188 RALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCA 247

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
           AD+  +N ++ GLC +    +A +L +  +     P   T   LL       + D  + +
Sbjct: 248 ADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAM 307

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLE 424
           L ++ ++   +   L       +  E ++  A +++E +  KG    V  YNILM  L +
Sbjct: 308 LGRVPEVNVVM---LNTVIRGCLA-EGKLARATELYEMMGSKGCPPDVHTYNILMHGLCK 363

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
           +G    A+ +  +M                                    E    P++  
Sbjct: 364 LGRCGSAVRMLDEME-----------------------------------EKGCAPNIVT 388

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y+ L    C+ G  D A  ++ D +           Y   I  + + G+ ++ + ++ EM
Sbjct: 389 YSTLLHSFCRNGMWDDARAML-DQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEM 447

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             +GC P+    + II  +C +  ++EA  +F NL E  ++  AN I Y+ ++
Sbjct: 448 KSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVV--ANGITYNTLI 498



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 19/221 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV-PELMDS------------------QGRI 184
           K +G K +  +YN + Y L  N+    A+ +   L++                    GR 
Sbjct: 448 KSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRW 507

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E L +  +M  + C  DV +Y  +I+ L  E N+D  + + EEM    ++ +  +Y  L
Sbjct: 508 QEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNML 567

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LCK G+V    EL +EM   G+  D   Y  LI GL   G    A +LL+ L +   
Sbjct: 568 INELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENV 627

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
             D+  YN +I   C+V+  D A  L +  V   + P+  T
Sbjct: 628 HPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNERT 668



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 116/277 (41%), Gaps = 54/277 (19%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAA----DQVPE---LMDSQG------------RI 184
           ++KG   N  +Y+ L +   RN ++  A    DQ+      M+SQG            ++
Sbjct: 378 EEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKL 437

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC---------------------- 222
            E + ++++M+   CKPD+  Y  +I  L     +D                        
Sbjct: 438 DEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTL 497

Query: 223 -------------LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
                        LR+  EM       DV++Y  LI  LCK G V R   L  EM   GI
Sbjct: 498 IHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGI 557

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
             +   Y +LI  L   GKV  A +L K++++ G   D+  YN++I GLC+V     A  
Sbjct: 558 KPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALN 617

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           L E    +++ PD  T N L+    ++  +D+   LL
Sbjct: 618 LLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLL 654



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 16/139 (11%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           KG K N  SYN L      N L +A           G++ + LE+ ++M      PD+  
Sbjct: 555 KGIKPNNFSYNMLI-----NELCKA-----------GKVRDALELSKEMLNQGLTPDIVT 598

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  +I  L       A L + E++  + V  D++ Y  LI   CK   +     L  +  
Sbjct: 599 YNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAV 658

Query: 266 ENGILIDRAIYGVLIEGLV 284
             GI+ +   +G++++  V
Sbjct: 659 SGGIVPNERTWGMMVQNFV 677


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 209/429 (48%), Gaps = 13/429 (3%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD     GR+ E +E+LE M++     DV  Y  +I       NLD    +++EM    
Sbjct: 74  LMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKG 133

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           + A+V+ Y  L+ GLC+ G+    + +   M E+GI  D   Y  LI+GL  +G+   A 
Sbjct: 134 ISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAM 193

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           DLL  +V+ G       YN ++ GLC+      A+K+  + ++     D  T N L+   
Sbjct: 194 DLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGL 253

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-S 410
            + G++D   KL   M   +  +  ++  F   + G  KE R+  A+ +  ++  KG   
Sbjct: 254 CDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCG 313

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACE 468
           ++  YN+L+G  L+ G++K+A+ L+ ++  L    NS ++SI I   C +   +I +   
Sbjct: 314 NLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLF 373

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
           C  +   ++  P++  YN L   LCK G ++ A  L ++ +GN    P    +   I   
Sbjct: 374 CEMRTHGLN--PALFDYNTLMASLCKEGSLEQAKSLFQE-MGNANCEPDIISFNTMIDGT 430

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
            ++G+ + + E+  +M + G  P+ +  S +I+ + K G L+EA+     +       +A
Sbjct: 431 LKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDA 490

Query: 589 NTIVYDEIL 597
             +VYD +L
Sbjct: 491 --LVYDSLL 497



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 184/400 (46%), Gaps = 6/400 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G + E + ++ +M R    PD+ +Y  +I  L   + L   + +  EM+      + + 
Sbjct: 11  NGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVT 70

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             TL+ GLCK GR+    EL   MK+ G   D  +YG LI G    G + +  +L  +++
Sbjct: 71  CTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEML 130

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G  A++  Y+ ++ GLCR+ Q+ +A  +     +  + PD  T   L+    + GR  
Sbjct: 131 GKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRAT 190

Query: 361 NFFKLLAQM-EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNIL 418
           +   LL  M EK +             L  KE  ++ A  +   +  KG  + V  YN L
Sbjct: 191 HAMDLLNLMVEKGEEPSNVTYNVLLSGLC-KEGLVIDAFKILRMMIEKGKKADVVTYNTL 249

Query: 419 MGALLEIGEVKKALYLFGKMRGLN--LEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           M  L + G+V +AL LF  M      LE N  +F++ I    + G + +A + H K+++ 
Sbjct: 250 MKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKK 309

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
               ++  YN L  G  K G+I  AM L +  L ++   P  F Y++ I   C+      
Sbjct: 310 GSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVL-DLGFVPNSFTYSILIDGFCKMRMLNI 368

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
              +  EM   G  P     + +++ +CK G+LE+A+ +F
Sbjct: 369 AKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLF 408



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 155/327 (47%), Gaps = 14/327 (4%)

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           ++++GL   G V +A  L++++       D+  YN++I GLC+ K+  +A  L       
Sbjct: 3   IVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAA 62

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIM 395
              P+  T   L+    + GRMD   +LL  M+K  F   AD+  +   + G      + 
Sbjct: 63  GCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFD--ADVVLYGTLISGFCNNGNLD 120

Query: 396 MALDVFEELKGKGYSS-VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
              ++F+E+ GKG S+ V  Y+ L+  L  +G+ K+A  +   M    +  + ++++  I
Sbjct: 121 RGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLI 180

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNV 512
               + G    A +  N ++E  + PS   YN L  GLCK G +  A  ++R  +  G  
Sbjct: 181 DGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKK 240

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEM-TQEGC-PPNEVICSAIISGMCKHGTLE 570
           A   T   Y   +  +C  G+ ++ +++ N M   E C  PN    + +I G+CK G L 
Sbjct: 241 ADVVT---YNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLT 297

Query: 571 EARKVFTNLRERKLLTEANTIVYDEIL 597
           +A K+   + ++   +  N + Y+ +L
Sbjct: 298 KAVKIHRKMVKKG--SCGNLVTYNMLL 322



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 129/288 (44%), Gaps = 4/288 (1%)

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N ++ GLCR     +A  L     +  ++PD  + N L+    +  ++     LL +ME 
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 372 LK-FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVK 429
              F  +       + L  K+ R+  A+++ E +K KG+ + V +Y  L+      G + 
Sbjct: 62  AGCFPNSVTCTTLMDGLC-KDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLD 120

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
           +   LF +M G  +  N +++S  +      G   EA    N + E    P V  Y  L 
Sbjct: 121 RGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLI 180

Query: 490 KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
            GLCK G    AM L+ + +      P+   Y + +  +C+ G      ++L  M ++G 
Sbjct: 181 DGLCKDGRATHAMDLL-NLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGK 239

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             + V  + ++ G+C  G ++EA K+F ++ + +   E N   ++ ++
Sbjct: 240 KADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLI 287



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 91/420 (21%), Positives = 174/420 (41%), Gaps = 57/420 (13%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           +KG + +  +YN L   L +  L   A ++  +M  +G+                K DV 
Sbjct: 201 EKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGK----------------KADVV 244

Query: 205 AYTAMIRVLAAERNLDACLRVWEEM--KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
            Y  +++ L  +  +D  L+++  M   ++ +E +V  +  LI GLCK GR+ +  ++ R
Sbjct: 245 TYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHR 304

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           +M + G   +   Y +L+ G +  GK+ +A +L K ++D G+  +   Y+ +I G C+++
Sbjct: 305 KMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMR 364

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
             + A  LF       L P     N L+    + G ++    L  +M        A+ E 
Sbjct: 365 MLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGN------ANCE- 417

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                                        +  +N ++   L+ G+ +    L  KM  + 
Sbjct: 418 ---------------------------PDIISFNTMIDGTLKAGDFQFVKELQMKMVEMG 450

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           L  ++L+FS  I    + G++ EA     +++     P    Y+ L KGL   G+    +
Sbjct: 451 LRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEII 510

Query: 503 MLVRDCLGNVASGPT-EFKYALTILH-VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
            L+       A G   + K   TIL  +C S +   ++E+L    Q       + C+ ++
Sbjct: 511 NLLHQM---AAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTSEGASISCNELL 567



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 3/144 (2%)

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
            +I ++    +G + EA     ++   S  P + +YN L  GLCK  ++  A+ L+ + +
Sbjct: 1   MNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLE-M 59

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
                 P        +  +C+ G  ++ +E+L  M ++G   + V+   +ISG C +G L
Sbjct: 60  EAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNL 119

Query: 570 EEARKVFTNLRERKLLTEANTIVY 593
           +  +++F  +  + +   AN + Y
Sbjct: 120 DRGKELFDEMLGKGI--SANVVTY 141


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 112/473 (23%), Positives = 215/473 (45%), Gaps = 24/473 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           K+ G   N  +YN L Y L ++   R A +V  +M   G                    +
Sbjct: 277 KEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDV 336

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
             +L +L +M  +  KP+V++YT  IRVL   +  D   R+  +M+ +  + DV+ +  L
Sbjct: 337 ETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVL 396

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC  GR+    ++F +MK++    DR  Y  L++     G      ++   +   GY
Sbjct: 397 IQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGY 456

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  Y ++I  LC+V +  +A ++F+   Q  + P+  + N L+    +  R  +  +
Sbjct: 457 NDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALE 516

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
           L   M+             F    GK    + A+  +E +K KG    V   N ++  L 
Sbjct: 517 LFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLA 576

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G +  A  +F +++ + +  +++++++ I+C  ++    EA +    +IE + VP V 
Sbjct: 577 KSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVL 636

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           A N L   L K G  D A  +    L  +   PT+  Y   +  + R G+ ++++ +L E
Sbjct: 637 AVNSLIDTLYKAGRGDEAWRIFYQ-LKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEE 695

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIVY 593
           M     PPN +  + I+  +CK+G + +A  +  ++  +     L+  NT++Y
Sbjct: 696 MYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIY 748



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 117/521 (22%), Positives = 212/521 (40%), Gaps = 60/521 (11%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           RR   D++   L+  + P  A + F  A ++       AS N +                
Sbjct: 179 RRAAEDVI-HALRSADGPAEALERFRSAARKPRVAQTTASCNYML--------------- 222

Query: 175 PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
            ELM   GR+ +M E+ + M+R + K +V  + A+   L  E  L +       MK+  +
Sbjct: 223 -ELMRGHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGI 281

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
             +   Y  L+  L K G      E++R M  +G++     Y VL+        V     
Sbjct: 282 VLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLW 341

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           LL+++   G + ++  Y   I  L + K+FD+AY++      +   PD  T   L+    
Sbjct: 342 LLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLC 401

Query: 355 EMGRMDNFFKLLAQMEKL--------------KFSVAADLEKFFEFLVGKEE-------- 392
           + GR+ +   +  +M+K               KF    D +   E     +         
Sbjct: 402 DAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVV 461

Query: 393 -------------RIMMALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFG 436
                        R+  AL++F+E+K KG   VP    YN L+   L+      AL LF 
Sbjct: 462 AYTAVIDALCQVGRVFEALEMFDEMKQKGI--VPEQYSYNSLISGFLKADRFGDALELFK 519

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            M     + N  +  + I  + +SG+ ++A + +  +     VP V A N +  GL K G
Sbjct: 520 HMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSG 579

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            +  A  +  + L  +   P    Y + I    ++ + ++ +++  +M +  C P+ +  
Sbjct: 580 RLGMAKRVFHE-LKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAV 638

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +++I  + K G  +EA ++F  L+E  L  E     Y+ +L
Sbjct: 639 NSLIDTLYKAGRGDEAWRIFYQLKEMNL--EPTDGTYNTLL 677



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 191/453 (42%), Gaps = 20/453 (4%)

Query: 144 KQKGYKHN-FASYNALA----YCLSRNNLFRAADQVPEL---------MDSQGRIAEMLE 189
           K  GY H  F +Y   +      + R  L ++   VP++         +   GR+     
Sbjct: 527 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKR 586

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +  +++     PD   YT MI+  +     D  ++++ +M ++    DV+A  +LI  L 
Sbjct: 587 VFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLY 646

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K GR      +F ++KE  +      Y  L+ GL  EGKV +   LL+++  S Y  +L 
Sbjct: 647 KAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 706

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            YN+I+  LC+    + A  +          PD S+ N ++    +  R +  F +  QM
Sbjct: 707 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM 766

Query: 370 EKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIG 426
           +K+     A L       V     +E + +  D F +   K   S    + LM  +L+  
Sbjct: 767 KKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSS--CHSLMEGILKKA 824

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            ++K++     +    + ++       I+   +    LEA E   K            YN
Sbjct: 825 GIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYN 884

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L  GL     ID A  L  + +  +  GP EF Y L +  + +S   E++++V  EM +
Sbjct: 885 SLICGLVDENLIDIAEGLFAE-MKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHR 943

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           +G     V  + IISG+ K   LE+A  ++ NL
Sbjct: 944 KGYESTYVTYNTIISGLVKSRRLEQAIDLYYNL 976



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 119/268 (44%), Gaps = 8/268 (2%)

Query: 177  LMDSQG---RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
            L+D+ G   RI EML++ E+M R   +     Y  +I  L   R L+  + ++  +    
Sbjct: 921  LLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQG 980

Query: 234  VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
                   Y  L+ GL K GR+     LF EM E G   +  IY +L+ G    G   K C
Sbjct: 981  FSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVC 1040

Query: 294  DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
             L +D+VD G   D+  Y  II  LC+  Q +     F   ++  L PD  T N L+   
Sbjct: 1041 HLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGL 1100

Query: 354  AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS- 410
             +  R++    L  +M+K    +  +L  +   +  +GK  +   A  ++EEL  KG+  
Sbjct: 1101 GKSKRLEEAVSLFNEMQKK--GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKP 1158

Query: 411  SVPIYNILMGALLEIGEVKKALYLFGKM 438
            +V  YN L+      G    A   +G+M
Sbjct: 1159 NVFTYNALIRGYSVSGSTDSAYAAYGRM 1186



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 154/330 (46%), Gaps = 21/330 (6%)

Query: 155  YNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
            YN+L   L   NL   A         +G  AEM E+        C PD F Y  ++  + 
Sbjct: 883  YNSLICGLVDENLIDIA---------EGLFAEMKELG-------CGPDEFTYNLLLDAMG 926

Query: 215  AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
                ++  L+V EEM +   E+  + Y T+I GL K  R+ +  +L+  +   G      
Sbjct: 927  KSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPC 986

Query: 275  IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
             YG L++GL+  G++  A +L  ++++ G +A+  IYN ++ G       +K   LF+  
Sbjct: 987  TYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDM 1046

Query: 335  VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEE 392
            V   + PD  +   ++    + G++++      Q+  L+  +  DL  +   +  +GK +
Sbjct: 1047 VDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQL--LEMGLEPDLITYNLLIDGLGKSK 1104

Query: 393  RIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
            R+  A+ +F E++ KG   ++  YN L+  L + G+  +A  ++ ++     + N  +++
Sbjct: 1105 RLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYN 1164

Query: 452  IAIQCHVESGDILEACECHNKIIEMSQVPS 481
              I+ +  SG    A   + ++I    +P+
Sbjct: 1165 ALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1194



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 148/341 (43%), Gaps = 39/341 (11%)

Query: 241  YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
            Y +LI GL     +     LF EMKE G   D   Y +L++ +    ++ +   + +++ 
Sbjct: 883  YNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMH 942

Query: 301  DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
              GY +    YN+II GL + ++ ++A  L+   +    +P   T  PLL    + GR++
Sbjct: 943  RKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIE 1002

Query: 361  NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
            +   L  +M  L++   A+                                  IYNIL+ 
Sbjct: 1003 DAENLFNEM--LEYGCKAN--------------------------------CTIYNILLN 1028

Query: 421  ALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
                 G  +K  +LF  M  +G+N ++   S++I I    ++G + +      +++EM  
Sbjct: 1029 GHRIAGNTEKVCHLFQDMVDQGINPDIK--SYTIIIDTLCKAGQLNDGLTYFRQLLEMGL 1086

Query: 479  VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
             P +  YN L  GL K   ++ A+ L  + +      P  + Y   ILH+ ++G+A +  
Sbjct: 1087 EPDLITYNLLIDGLGKSKRLEEAVSLFNE-MQKKGIVPNLYTYNSLILHLGKAGKAAEAG 1145

Query: 539  EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            ++  E+  +G  PN    +A+I G    G+ + A   +  +
Sbjct: 1146 KMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRM 1186



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 106/244 (43%), Gaps = 19/244 (7%)

Query: 145  QKGYKHNFASYNALAYCLSRN-NLFRAADQVPELMDS------------------QGRIA 185
            +KGY+  + +YN +   L ++  L +A D    LM                     GRI 
Sbjct: 943  RKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIE 1002

Query: 186  EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
            +   +  +M    CK +   Y  ++       N +    ++++M    +  D+ +Y  +I
Sbjct: 1003 DAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIII 1062

Query: 246  MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              LCK G++  G   FR++ E G+  D   Y +LI+GL    ++ +A  L  ++   G  
Sbjct: 1063 DTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIV 1122

Query: 306  ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
             +L  YNS+I  L +  +  +A K++E  +     P+  T N L+   +  G  D+ +  
Sbjct: 1123 PNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAA 1182

Query: 366  LAQM 369
              +M
Sbjct: 1183 YGRM 1186


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 207/442 (46%), Gaps = 22/442 (4%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K  G   N  +YN L +   +    + A +V ELM  +G +                PDV
Sbjct: 273 KNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGML----------------PDV 316

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           + Y  M+R L  E  +D  +R+ ++M+   +  DV+ Y TLI G  +        +L  E
Sbjct: 317 WTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEE 376

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           MK  G+  +   + ++I+    EGK+ +A +++  +V+SG+  D   YN++I G C+  +
Sbjct: 377 MKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGK 436

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
             +AYK+ +   +  L  D  T+N LL       ++D+ + L   M+  K     D   +
Sbjct: 437 MAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTL--TMKARKRGYILDEVTY 494

Query: 384 FEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
              ++G  K+E+   AL ++EE+K  G  +++  YN ++  L   G+  +A+    ++  
Sbjct: 495 GTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLE 554

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             L  +  + +I I  +   G + +A + HNK++E S  P +   N L +GLC+ G ++ 
Sbjct: 555 KGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEK 614

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
            + L    +       T   Y + I   C+    E   +++ EM  +   P+    +AI+
Sbjct: 615 GLTLFNTWISKGKPMDT-VTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIV 673

Query: 561 SGMCKHGTLEEARKVFTNLRER 582
           +G+ K G  EEA K+     E+
Sbjct: 674 TGLTKAGRTEEAEKLALKFAEK 695



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/460 (22%), Positives = 199/460 (43%), Gaps = 20/460 (4%)

Query: 128 VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEM 187
           +   P L  + F+   K+  ++ N  + N L   L R+N             S   +   
Sbjct: 150 ISKQPHLGHQIFN-KMKRLRFRPNLLTCNTLLNALVRSN-------------SSHSLVFS 195

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            E+ +   +   +P+V  +  +I    ++ N +  LR+  +M +     D + Y T++  
Sbjct: 196 REVFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTA 255

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK  ++ +  +L  +MK +G+  +R  Y +L+ G      + +A ++++ +   G   D
Sbjct: 256 LCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPD 315

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  YN+++ GLC   + D+A +L +      L PD  T N L+  C E    D  FKL+ 
Sbjct: 316 VWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVE 375

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
           +M+                    E +I  A +V  ++   G+S     YN ++    + G
Sbjct: 376 EMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAG 435

Query: 427 EVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
           ++ +A  +  +M  +GL L+  +L+  +   C  +  D  +A     K  +   +     
Sbjct: 436 KMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLD--DAYTLTMKARKRGYILDEVT 493

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y  L  G  K  + D A+ L  + +       T   Y   I  +C SG+ ++ ++ LNE+
Sbjct: 494 YGTLIMGYFKDEQADRALKLWEE-MKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNEL 552

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
            ++G  P+E   + II G C  G +E+A +    + E  L
Sbjct: 553 LEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSL 592



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 163/413 (39%), Gaps = 65/413 (15%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++AE  +++++M R   K D F    ++  +  E+ LD    +  + +K     D + Y
Sbjct: 435 GKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTY 494

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLIMG  K  +  R  +L+ EMKE GI+     Y  +I GL   GK  +A D L +L++
Sbjct: 495 GTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLE 554

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D    N II G C     +KA++     V+  L PD  T N LL      G ++ 
Sbjct: 555 KGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEK 614

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
              L                  F   + K               GK   +V  YNI++ +
Sbjct: 615 GLTL------------------FNTWISK---------------GKPMDTVT-YNIIISS 640

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
             +   ++ A  L  +M G NLE +  +++  +    ++G   EA +   K  E  Q   
Sbjct: 641 FCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQ--- 697

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
                       ++   D +  L          G ++  Y+  I  +C  G+ +  +++ 
Sbjct: 698 ------------QVKTQDTSPEL----------GTSDMMYSEQISSLCTQGKYKDAMKLF 735

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
            +  Q+G   N+     ++ G+ K       RK FT       +  A    +D
Sbjct: 736 QQAEQKGVSLNKYTYIKLMDGLLKR------RKSFTTTSLLPFMVSATIQFFD 782



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 91/228 (39%), Gaps = 32/228 (14%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDS------------------QGR 183
           K+ G      +YN +    CLS     +A D++ EL++                   +G 
Sbjct: 518 KETGIVATIITYNTIIRGLCLS-GKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGA 576

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + +  +   KM  +  KPD+F    ++R L  E  L+  L ++          D + Y  
Sbjct: 577 VEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNI 636

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I   CK  R+    +L  EM+   +  DR  Y  ++ GL   G+  +A  L     + G
Sbjct: 637 IISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKG 696

Query: 304 YRA-------DLG----IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
            +        +LG    +Y+  I  LC   ++  A KLF+   Q  ++
Sbjct: 697 QQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVS 744



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 7/165 (4%)

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGD---ILEACECHNKIIEMSQVPSVAAYNCLTK 490
           +F KM+ L    N L+ +  +   V S     ++ + E     +++   P+V  +N L  
Sbjct: 160 IFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIH 219

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           G C     + A+ L+   +G     P    Y   +  +C+  +  ++ ++L +M   G  
Sbjct: 220 GYCSDNNTEEALRLINQ-MGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLF 278

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIV 592
           PN    + ++ G CK   L+EA +V   +  + +L +    NT+V
Sbjct: 279 PNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMV 323


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 195/401 (48%), Gaps = 13/401 (3%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           +++ EKM+ N CK DVF Y  +I  L  +      L ++ EM    +  DV+ Y +L+ G
Sbjct: 132 IKLHEKMKGN-CKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDG 190

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC+ GR+    E F+EM+  GI  D   Y  LI GL   G   +    L  +VD G+  D
Sbjct: 191 LCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPD 250

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
              +  +I GLC+  +  +A ++ E+       PD  T N L+     +G++++  KL  
Sbjct: 251 AFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFE 310

Query: 368 QMEK--LKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
            +    +K +V +     +  L+    K+++I  A  +FEE++ KG   S   YN L+GA
Sbjct: 311 SLADRGIKLNVFS-----YNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGA 365

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L + G V+ A  LF +M+     +   ++ + +    ++G + EA +    I +    P+
Sbjct: 366 LCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPN 425

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           +  ++ L  G+C+ G+++ A     +   N    P    Y + I  +C  G   + +++L
Sbjct: 426 IEVFSILLDGMCRAGKLEEAWKQFDEISKNGLE-PDTIAYNILINGLCNKGMLSEAVKLL 484

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
            +M ++GC P+ +  + II  + K   + EA ++   +R R
Sbjct: 485 WQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNR 525



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 192/411 (46%), Gaps = 16/411 (3%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PD    T +++ +  E  +   +++++EM +  +  D   Y  LI GLCK  +     +
Sbjct: 74  EPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIK 133

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L  +MK N    D   YG++I+ L  +G   +A D+  +++ +G   D+ +Y+S++ GLC
Sbjct: 134 LHEKMKGN-CKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLC 192

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           R  +  +A + F+      ++ D  T N L+   +  G        L  M    FS   D
Sbjct: 193 RFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFS--PD 250

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
              F   + G  KE ++  A  + E +  KG    +  YN LM  L  +G+++ A  LF 
Sbjct: 251 AFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFE 310

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            +    +++N  S++I I  + +   I EA     ++      PS   YN L   LC+ G
Sbjct: 311 SLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSG 370

Query: 497 EIDAAMML---VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
            +  A  L   ++ C G      T   Y + +  +C++G  E+ I++   + +    PN 
Sbjct: 371 RVRTAQKLFVEMQTC-GQFLKLST---YCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNI 426

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
            + S ++ GMC+ G LEEA K F  + +  L  E +TI Y+ ILI  +  K
Sbjct: 427 EVFSILLDGMCRAGKLEEAWKQFDEISKNGL--EPDTIAYN-ILINGLCNK 474



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 141/287 (49%), Gaps = 25/287 (8%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEML----------------- 188
           +G+  +  ++  L   L +      A Q+ ELM  +G+  ++L                 
Sbjct: 245 RGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLED 304

Query: 189 --EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
             ++ E +     K +VF+Y  +I     ++ +D   R++EEM+   ++   + Y TLI 
Sbjct: 305 ATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIG 364

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
            LC+ GRV    +LF EM+  G  +  + Y VL++GL   G + +A DL + +  + ++ 
Sbjct: 365 ALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKP 424

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           ++ +++ ++ G+CR  + ++A+K F+   ++ L PD    N L+      G +    KLL
Sbjct: 425 NIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLL 484

Query: 367 AQMEK---LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS 410
            QME+   L  S+  ++    + L+ KE  I  A+ + EE++ + +S
Sbjct: 485 WQMEEKGCLPDSITFNV--IIQNLL-KENEIHEAIQLLEEMRNRNFS 528



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 97/211 (45%), Gaps = 17/211 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           + KG K +  +YN L   L ++   R A ++   M + G+  ++                
Sbjct: 348 RPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKL---------------- 391

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  ++  L    +L+  + +++ +KK   + ++  +  L+ G+C+ G++    + F E
Sbjct: 392 STYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDE 451

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           + +NG+  D   Y +LI GL  +G + +A  LL  + + G   D   +N II  L +  +
Sbjct: 452 ISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENE 511

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
             +A +L E     + +PD   V  +L+C A
Sbjct: 512 IHEAIQLLEEMRNRNFSPD-EAVTSMLLCLA 541


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 121/520 (23%), Positives = 232/520 (44%), Gaps = 58/520 (11%)

Query: 112 SKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA 171
           +   ++TP  + ++L++  + + + + F W G QKGY+H+F  Y  L   L  N  F+  
Sbjct: 65  NSFHKITPFQLCKLLELPLDVSTSMELFSWTGSQKGYRHSFDVYQVLIGKLGSNGEFKTI 124

Query: 172 DQVPELMDSQGRIAEMLEILEKMR------------------RNL--CKPDVFAYTAMIR 211
           D++   M  +G + +    +  MR                  RN+  C+P   +Y  ++ 
Sbjct: 125 DRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLE 184

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
           +L +         V+ +M    +   +  +  ++  LC    V     + R+M ++G + 
Sbjct: 185 ILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVP 244

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           +  IY  LI  L    +V +A  LL+++   G   D   +N +I GLC+  + ++A K+ 
Sbjct: 245 NSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMV 304

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-------------------- 371
              +     PD  T   L+    ++GR+D    L  ++ K                    
Sbjct: 305 NRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLD 364

Query: 372 ----------LKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
                       + +  D+  +   + G  K+  + +AL+V  +++ KG   +V  Y IL
Sbjct: 365 DAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTIL 424

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    ++G++ +A  L  +M    L+ N++ F+  I    +   I EA E   ++     
Sbjct: 425 VDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGC 484

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVCRSGEAEK 536
            P V  +N L  GLC++ EI  A+ L+RD +  G VA+  T   Y   I    R GE ++
Sbjct: 485 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVT---YNTLINAFLRRGEIKE 541

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
             +++NEM  +G   +E+  +++I G+C+ G +++AR +F
Sbjct: 542 ARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLF 581



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 201/425 (47%), Gaps = 25/425 (5%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E L++LE+M    C PD   +  +I  L     ++   ++   M       D + Y 
Sbjct: 261 RVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYG 320

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            L+ GLCK GRV    +LF  + +        I+  LI G V  G++  A  +L D+V S
Sbjct: 321 YLMNGLCKIGRVDAAKDLFYRIPKP----TSVIFNTLIHGFVTHGRLDDAKAVLSDMVTS 376

Query: 303 -GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  YNS+I G  +      A ++          P+  +   L+    ++G++D 
Sbjct: 377 YGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDE 436

Query: 362 FFKLLAQM--EKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIY 415
            + LL +M  + LK +        F  L+    KE RI  A+++F E+  KG    V  +
Sbjct: 437 AYNLLNEMSADGLKPNTVG-----FNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTF 491

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+  L E+ E+K AL+L   M    +  N+++++  I   +  G+I EA +  N+++ 
Sbjct: 492 NSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVF 551

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
              +     YN L KGLC+ GE+D A  L    L +    P+     + I  +CRSG  E
Sbjct: 552 QGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD-GLVPSSISCNILINGLCRSGMVE 610

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIV 592
           + +E   EM   G  P+ V  +++I+G+C+ G +E+   +F     RKL  E    +T+ 
Sbjct: 611 EAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMF-----RKLQAEGIPPDTVT 665

Query: 593 YDEIL 597
           Y+ ++
Sbjct: 666 YNTLM 670



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 168/400 (42%), Gaps = 38/400 (9%)

Query: 180 SQGRIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           + GR+ +   +L  M  +    PDV  Y ++I     +  +   L V  +M+    + +V
Sbjct: 359 THGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNV 418

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
            +Y  L+ G CK G++   + L  EM  +G+  +   +  LI     E ++ +A ++ ++
Sbjct: 419 YSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFRE 478

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +   G + D+  +NS+I GLC V +   A  L    + + +  +  T N L+      G 
Sbjct: 479 MPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGE 538

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL 418
           +    KL+ +M                         +    + +E+          YN L
Sbjct: 539 IKEARKLVNEM-------------------------VFQGSLLDEIT---------YNSL 564

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L   GEV KA  LF KM    L  +S+S +I I     SG + EA E   +++    
Sbjct: 565 IKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGS 624

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P +  +N L  GLC+ G I+  + + R  L      P    Y   +  +C+ G      
Sbjct: 625 TPDIVTFNSLINGLCRAGRIEDGLTMFRK-LQAEGIPPDTVTYNTLMSWLCKGGFVYDAC 683

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
            +L+E  ++G  PN+   S ++  +    TL+  R+ F N
Sbjct: 684 LLLDEGIEDGFVPNDRTWSILLQSLVPQETLD--RRTFYN 721



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 1/114 (0%)

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P++  +  + K LC + E+D+A+ ++RD +      P    Y   I  + +     + ++
Sbjct: 209 PTLFTFGVVMKALCAVNEVDSALSVLRD-MTKHGCVPNSVIYQTLIHSLSKCNRVNEALQ 267

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
           +L EM   GC P+    + +I G+CK   + EA K+   +  R    +  T  Y
Sbjct: 268 LLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGY 321


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 127/554 (22%), Positives = 237/554 (42%), Gaps = 27/554 (4%)

Query: 51  SPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTE 110
           SPP    K   +   +  + S  +  K+  +++ +  + R +      + + WG  +   
Sbjct: 36  SPPEMYGKVKVNSFVDDASHSQDNALKSEGMRKTVHDVCRVL------DTYPWGAALEDA 89

Query: 111 LSKLRRV-TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFR 169
           L+    +  P+LV  V++   +  +A  +F W  ++    H+  +YNAL   ++R     
Sbjct: 90  LNTFDEMPQPELVVGVIRRLKDVRVALHYFRWVERKTKQLHSPEAYNALLMLMARTRNLE 149

Query: 170 AADQVPELMDSQG-------------------RIAEMLEILEKMRRNLCKPDVFAYTAMI 210
             +Q+ E M   G                   ++ E   ++E MR+   +P   AYT +I
Sbjct: 150 YLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLI 209

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
             L+A    D  L +  +M++   E  V  + TLI    + GRV     L  EMK N   
Sbjct: 210 GALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFN 269

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
            D  +Y V I+     GKV  A     +L   G   D   + S+IG LC+ ++ D+A +L
Sbjct: 270 ADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVEL 329

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK 390
           FE    +   P     N +++    +G+ +  + LL + ++     +          +G+
Sbjct: 330 FEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGR 389

Query: 391 EERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
           + ++  AL + E +K     ++  YNIL+  L + GE++ AL +   M+   L  N ++ 
Sbjct: 390 KGKVEEALRILEAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITV 449

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +I I    ++  + EAC     +      P    +  L  GL + G+++ A ML    L 
Sbjct: 450 NIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKML- 508

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
           +    P    Y   I +  + G  E   ++  EM   GC P+ ++ +  +  + K G +E
Sbjct: 509 DSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIE 568

Query: 571 EARKVFTNLRERKL 584
           + R +F  ++ + L
Sbjct: 569 KGRALFEEIKAQGL 582



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 187/417 (44%), Gaps = 33/417 (7%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           NA+ Y     N F+            GR  +  +I ++M    C PD+      +  +  
Sbjct: 515 NAVVYTSLIRNFFKC-----------GRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFK 563

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
              ++    ++EE+K   +  DV +Y  LI GL KGG     ++LF EMKE G+ +D   
Sbjct: 564 AGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRA 623

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           Y ++I+G    GKV KA  LL+++   G +  +  Y S+I GL ++ + D+AY LFE   
Sbjct: 624 YNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK 683

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ-MEKLKFSVAADLEKFFEFLVGKEERI 394
              +  +    + L+    ++GR+D  + +L + M+K             + LV K E I
Sbjct: 684 SKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALV-KAEEI 742

Query: 395 MMALDVFEELKG-KGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
             AL  F+ +K  K   +   Y+I++  L ++ +  KA   + +M+   L+ N+++++  
Sbjct: 743 DEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTM 802

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
           I      G++LEA +   +      +P  A YN + +GL    +   A +L  +      
Sbjct: 803 ISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEE------ 856

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK--HGT 568
                     T L  CR   ++  + +L+ + +  C     I  A++  M K  H T
Sbjct: 857 ----------TRLKGCRI-YSKTCVVLLDALHKADCLEQAAIVGAVLREMAKSQHAT 902



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 113/490 (23%), Positives = 188/490 (38%), Gaps = 64/490 (13%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEMLEIL 191
           N  SYN L   L +     AA +V + M   G                   R+ E   I 
Sbjct: 410 NLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIF 469

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
             +   +C PD   + ++I  L     ++    ++E+M       + + Y +LI    K 
Sbjct: 470 LGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKC 529

Query: 252 GRVVRGHELFREM-----------------------------------KENGILIDRAIY 276
           GR   GH++++EM                                   K  G+  D   Y
Sbjct: 530 GRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSY 589

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
            +LI GLV  G       L  ++ + G   D   YN +I G C+  + +KAY+L E    
Sbjct: 590 SILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKT 649

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE-KFFEFLV---GKEE 392
             L P   T   ++   A++ R+D  + L  + +    S A DL    +  L+   GK  
Sbjct: 650 KGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK----SKAVDLNVVVYSSLIDGFGKVG 705

Query: 393 RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
           RI  A  + EEL  KG + +   +N L+ AL++  E+ +AL  F  M+ L    N +++S
Sbjct: 706 RIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYS 765

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
           I +    +     +A     ++ +    P+   Y  +  GL ++G +  A  L      +
Sbjct: 766 IMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFER-FKS 824

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
               P    Y   I  +  + +A     +  E   +GC      C  ++  + K   LE+
Sbjct: 825 SGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVLLDALHKADCLEQ 884

Query: 572 ARKVFTNLRE 581
           A  V   LRE
Sbjct: 885 AAIVGAVLRE 894



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 144/318 (45%), Gaps = 23/318 (7%)

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           ++    + ++  +A+ + E   +    P +S    L+   +     D    LL QM+++ 
Sbjct: 173 MVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIG 232

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS-VPIYNILMGALLEIGEVKKAL 432
           + V   L      +  +E R+  AL + +E+K   +++ + +YN+ +    ++G+V  A 
Sbjct: 233 YEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAW 292

Query: 433 YLFGKMRGLNLEVNSLSFS--IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
             F +++   L  + ++F+  I + C  E  D  EA E   ++     VP V AYN +  
Sbjct: 293 KFFHELKSQGLVPDDVTFTSMIGVLCKAERVD--EAVELFEELDSNKSVPCVYAYNTMIM 350

Query: 491 GLCKIGEIDAAMMLV-----RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           G   +G+ + A  L+     + C+      P+   Y   +  + R G+ E+ + +L  M 
Sbjct: 351 GYGSVGKFNEAYSLLERQKRKGCI------PSVIAYNCILTCLGRKGKVEEALRILEAMK 404

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM-KKK 604
            +   PN    + +I  +CK G LE A KV  +++E  L     T+    I+I+ + K +
Sbjct: 405 MDA-APNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITV---NIMIDRLCKAQ 460

Query: 605 TADLVLSGLKFFGLESKL 622
             D   S   F GL+ K+
Sbjct: 461 RLDEACS--IFLGLDHKV 476


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 140/629 (22%), Positives = 261/629 (41%), Gaps = 109/629 (17%)

Query: 43  NSASEPHQSPPFNVQKWDPHY--LPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQ 100
           + ++  H +PPF+    + H+  + ++  +  PS+   +    H                
Sbjct: 33  HDSTSNHSAPPFS----ETHFQDVISKSIREKPSNFSNYYWLSH---------------- 72

Query: 101 FQWGPQVVTELSKLRRVTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALA 159
            Q+GP +V          PDL   VL     +P +A + F WA  Q G++ +   + A+ 
Sbjct: 73  -QFGPVIVD---------PDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAIL 122

Query: 160 YCLSRNNLFRAADQVPE---------------------------------LMDSQGRIAE 186
             L++NNL R+A  V E                                 +   +  + +
Sbjct: 123 EILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQ 182

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
            L + +KM ++   PDV     ++R+L  +  +   + V+  M +  ++  ++ Y TL+ 
Sbjct: 183 CLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLD 242

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
             CKGG+V +G +L  EM+  G   +   Y VLI GL  +G+  +A  L+ +++ +G + 
Sbjct: 243 SYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKV 302

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
               YN +I G        +A  L E  V    +P  +T N  +    ++GRM +  + L
Sbjct: 303 SAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQL 362

Query: 367 AQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKG-KGYSSVPIYNILMGALL 423
           + M  L  ++  D+  +   + G  +   +M A  +F+EL+    + ++  YN L+  L 
Sbjct: 363 SDM--LANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLC 420

Query: 424 EIGEVKKALYL-----------------------------------FGKMRGLNLEVNSL 448
             GE++ A  L                                   F +M    LE++S 
Sbjct: 421 RQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSY 480

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           +++  I   ++ GD   A     +++     P +  YN +  GLCK+G ++ A  L++  
Sbjct: 481 AYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKM 540

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
           + +    P    Y   I     +G   K  E+  EM  +G  P+ V  + +I G    G 
Sbjct: 541 VSD-GVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGR 599

Query: 569 LEEARKVFTNLRERKLLTEANTIVYDEIL 597
           LE A   F+ ++E+ +L   N I Y+ ++
Sbjct: 600 LERAFIYFSEMQEKGIL--PNVITYNSLI 626



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 106/458 (23%), Positives = 199/458 (43%), Gaps = 40/458 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLF-RAADQVPELMDS------------------QGRI 184
           +++G   N  +YN L   LS+   F +A   + E++ +                  +G +
Sbjct: 261 QRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGML 320

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           AE L + E+M      P V  Y + I  L     +   ++   +M  + +  DV++Y TL
Sbjct: 321 AEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTL 380

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G C+ G +++   LF E++   +      Y  L++GL  +G++  A  L  ++++ G 
Sbjct: 381 IYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGI 440

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  Y  ++ G C++     A + F+  + + L  D       +V   ++G     F 
Sbjct: 441 APDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFS 500

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IYNILM 419
           L  Q E L      DL  +   + G  K   +  A ++ +++   G   +P    Y  ++
Sbjct: 501 L--QEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGV--IPDYVTYTSII 556

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            A LE G ++K   +F +M    L  + +++++ I  H   G +  A    +++ E   +
Sbjct: 557 HAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGIL 616

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKI 537
           P+V  YN L  GLCK+  +D A     +    V  G  P ++ Y + I   C  G  ++ 
Sbjct: 617 PNVITYNSLINGLCKVRRMDQAYNFFAEM---VEKGIFPNKYSYTILINENCNMGNWQEA 673

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGM---CK----HGT 568
           + +  +M   G  P+    SA++  +   CK    HGT
Sbjct: 674 LSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVHGT 711


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 138/606 (22%), Positives = 254/606 (41%), Gaps = 64/606 (10%)

Query: 50  QSPPFNVQKWDP-HYLPNQKTQSPPSDPKTFQLQRHLSPIARFI-TDAFRKNQFQW--GP 105
           +SP F ++K +P H+L      +    PKT      +  +   I TD        W   P
Sbjct: 7   KSPLFLLKKKNPLHFLVFSSVPTSYPFPKTTPFPNLVFKVLDLISTDP------HWPKNP 60

Query: 106 QVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRN 165
           ++    S LR   P  V++++    N   A +FF+W  K+  YKH+   + ++   L ++
Sbjct: 61  ELNRLASTLR---PHHVSKIINTHINTDTALQFFYWISKRHFYKHDMGCFVSMLNRLVKD 117

Query: 166 NLFRAADQVPELM-------DSQGRIAEMLEILEKMRRNL-------------------- 198
            +   AD V  LM       D   R+ + L  +      L                    
Sbjct: 118 KILAPADHVRILMIKACRNEDELKRVTDFLHGISSSDSGLFGFTLYSFNTLLLQLGKFDM 177

Query: 199 ---------------CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
                           KP +  +  MI +L  +  +   + V+ ++ +  +  D   Y +
Sbjct: 178 VTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTS 237

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           LI+G C+  ++ +  E+F  M ++G   +   Y  LI GL  EG++G+A D+L+++ + G
Sbjct: 238 LILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKG 297

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
               +  Y   I  LC + + D A  L     +   +P   T   ++      G+M+   
Sbjct: 298 IEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAI 357

Query: 364 KLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKG-YSSVPIYNILMG 420
            +  +M  LK  +  +   +   +  +  E R  +AL +F+ ++G G  ++   YN ++ 
Sbjct: 358 GMYHKM--LKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIK 415

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L  + +++KA+ +F KM         ++++  I  +++ G +  A      + E +  P
Sbjct: 416 GLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEP 475

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
               Y  L  G CK G++D+A     + L      P ++ Y   I   C+ G+ +  + +
Sbjct: 476 DERTYCELISGFCKGGKLDSATSFFYEML-KCGISPNQWTYTAMIDGYCKEGKIDVALSL 534

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
              M + GC  +    +AIISG+ K     EA K    + E+ L  + NTI Y   LI  
Sbjct: 535 FERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGL--QPNTITYTS-LING 591

Query: 601 MKKKTA 606
           + K TA
Sbjct: 592 LCKNTA 597



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 191/415 (46%), Gaps = 10/415 (2%)

Query: 181 QGRIAEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +G++ E + +  K+ + +LC PD F YT++I      R LD    V++ M KD    + +
Sbjct: 210 KGKVQEAVLVFNKIFQFDLC-PDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSV 268

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TLI GLC  GR+    ++  EM E GI      Y V I  L   G+V  A +L++ +
Sbjct: 269 TYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSM 328

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G    +  Y +II GL R  + + A  ++   +++ L P+  T N L+      GR 
Sbjct: 329 GKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRF 388

Query: 360 DNFFKLLAQMEKL-KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNI 417
               K+   ME     + A    +  + L G ++ I  A+ VF ++   G S +V  YN 
Sbjct: 389 GIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDD-IEKAMVVFNKMLKDGPSPTVVTYNT 447

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+   L+ G +  A      M+  N E +  ++   I    + G +  A     ++++  
Sbjct: 448 LIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCG 507

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT--ILHVCRSGEAE 535
             P+   Y  +  G CK G+ID A+ L      N  S   E   A+   +    R  EAE
Sbjct: 508 ISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAE 567

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           K      +MT++G  PN +  +++I+G+CK+     A K+F  + ++  L  A+T
Sbjct: 568 KFCA---KMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHT 619



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 195/444 (43%), Gaps = 32/444 (7%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++GRI E +++LE+M     +P V+ YT  I  L     +D  + +   M K      V 
Sbjct: 279 NEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQ 338

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I GL + G++     ++ +M + G++ +   Y  LI  L  EG+ G A  +   +
Sbjct: 339 TYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWM 398

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G  A+   YN II GL  +   +KA  +F   ++D  +P   T N L+V   + G +
Sbjct: 399 EGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYL 458

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           +N  + L  M++   +   D   + E + G  K  ++  A   F E+   G S +   Y 
Sbjct: 459 NNATRFLYMMKE--SNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYT 516

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG-----DILEACECHN 471
            ++    + G++  AL LF +M     E N  S SI     + SG        EA +   
Sbjct: 517 AMIDGYCKEGKIDVALSLFERM-----EENGCSASIETYNAIISGLSKGNRFSEAEKFCA 571

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTIL 526
           K+ E    P+   Y  L  GLCK    + A      M  ++CL      P    Y   I 
Sbjct: 572 KMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCL------PNAHTYTSLIY 625

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
            +C+ G+    ++    +T+ GC P     S ++SG+C+ G   EA ++  N++E+ L  
Sbjct: 626 GLCQEGK----VDAAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGL-- 679

Query: 587 EANTIVYDEILIEHMKKKTADLVL 610
             +  +Y  +L+ H K    D  L
Sbjct: 680 SPSMEIYCSLLVAHCKSLKVDCAL 703



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 145/350 (41%), Gaps = 34/350 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G +      L  M+ + C+PD   Y  +I        LD+    + EM K  +  +   
Sbjct: 455 RGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWT 514

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G CK G++     LF  M+ENG       Y  +I GL    +  +A      + 
Sbjct: 515 YTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMT 574

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G + +   Y S+I GLC+    + A+K+F    + +  P+  T   L+    + G++D
Sbjct: 575 EQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVD 634

Query: 361 NFFKLLAQ----------------------------MEKLK-FSVAADLEKFFEFLVG-- 389
              +L                               +E +K   ++  +E +   LV   
Sbjct: 635 AAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHC 694

Query: 390 KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           K  ++  AL++F  +  KG+   + IY +L+ AL  +   ++AL +F  +       + +
Sbjct: 695 KSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLI 754

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQ-VPSVAAYNCLTKGLCKIGE 497
            +++ +   ++ GD  + C     ++E     PS+  Y  L + L K+G+
Sbjct: 755 VWTVLVDGLLQEGDS-DLCMKFLYLMESRNCTPSLHTYIILARELSKVGK 803



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 102/246 (41%), Gaps = 23/246 (9%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEML--------------- 188
           ++ G   +  +YNA+   LS+ N F  A++    M  QG     +               
Sbjct: 539 EENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTAT 598

Query: 189 ----EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
               +I  +M +  C P+   YT++I  L  E  +DA     E + ++  E  +  Y TL
Sbjct: 599 NLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAA----ERLTENGCEPTIDTYSTL 654

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + GLC+ GR     +L   MKE G+     IY  L+       KV  A ++   +   G+
Sbjct: 655 VSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGF 714

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           +  L IY  +I  LC V + ++A  +F+  ++     D      L+    + G  D   K
Sbjct: 715 QPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMK 774

Query: 365 LLAQME 370
            L  ME
Sbjct: 775 FLYLME 780


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 213/454 (46%), Gaps = 22/454 (4%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           + G     + + +KM +N CKP+V  Y  +I  L  +R ++  +    EM    +  D +
Sbjct: 210 NSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAI 269

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y +++ GLC  G++     LF+ M++NG   D   Y ++I+ L  +  V  A D L ++
Sbjct: 270 TYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEM 329

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           VD G   D+  Y +I+ GLC + Q ++A +LF+   Q    PD    N ++    +   +
Sbjct: 330 VDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLV 389

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYN 416
           ++  + L++M  +   +  +   +   L G     ++  A  +F+E+ G+    +   ++
Sbjct: 390 NDAMEFLSEM--VDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFS 447

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+  L + G V +A ++F  M    +E N  +++  +  +     + EA +    ++  
Sbjct: 448 ILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGK 507

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P + +YN L  G C    +D A  L+   +      P    Y   +  +C  G    
Sbjct: 508 GCAPDLHSYNILINGYCNSRRMDKAKALLTQ-MSVKKLTPNTVTYNTIMKGLCYVGRLLD 566

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
             E+  +M   G  P  +  S +++G+CKHG L+EA K+F +++E+KL  E + I+Y  I
Sbjct: 567 AQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKL--EPDIILY-TI 623

Query: 597 LIEHM----KKKTADLVLSGLKFFGLESKLKAKG 626
           LIE M    K + A          GL SKL A G
Sbjct: 624 LIEGMFIGGKLEVAK---------GLFSKLSADG 648



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 210/462 (45%), Gaps = 25/462 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFR-AADQVPELMDSQ------------------GRI 184
           +Q G K N  +YN +   L ++ L   A D + E++                     G++
Sbjct: 225 EQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQL 284

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E   + ++M +N CKPDV  Y  +I  L  +R ++       EM    +  DV+ Y T+
Sbjct: 285 NEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTI 344

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + GLC  G++     LF++M++ G   D   Y  +I+ L  +  V  A + L ++VD G 
Sbjct: 345 LHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGI 404

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             +   Y++I+ G C + Q D+A +LF+  V  ++ P+  T + L+    + G +     
Sbjct: 405 PPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARW 464

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYNILMGA 421
           +   M +    V  ++  +   + G   R  M  A  VFE + GKG +  +  YNIL+  
Sbjct: 465 VFETMTEK--GVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILING 522

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
                 + KA  L  +M    L  N+++++  ++     G +L+A E   K+     +P+
Sbjct: 523 YCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPT 582

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           +  Y+ L  GLCK G +D A+ L +  +      P    Y + I  +   G+ E    + 
Sbjct: 583 LMTYSILLNGLCKHGHLDEALKLFKS-MKEKKLEPDIILYTILIEGMFIGGKLEVAKGLF 641

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
           ++++ +G  P     + +I G+ K G  +EA ++F   +  K
Sbjct: 642 SKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKMMK 683



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/419 (22%), Positives = 182/419 (43%), Gaps = 44/419 (10%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + + L    +M R   +P +  +   +  +A  +     + +  +M    V   V +   
Sbjct: 74  VDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNI 133

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           LI  LC+   V     ++ +M + GI  D   +  LI G+  EGK+  A +L  ++V SG
Sbjct: 134 LINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSG 193

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDN 361
           +  D+  YN++I GLC     + A  +F+   Q+   P+  T N ++  +C         
Sbjct: 194 HEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLC--------- 244

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
                                       K+  +  A+D   E+ G+G     I YN ++ 
Sbjct: 245 ----------------------------KDRLVNDAMDFLSEMVGRGIPPDAITYNSIVH 276

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L  +G++ +A  LF +M     + + ++++I I    +   + +A +  +++++    P
Sbjct: 277 GLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPP 336

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  Y  +  GLC +G+++ A+ L +  +      P    Y   I  +C+       +E 
Sbjct: 337 DVVTYTTILHGLCYLGQLNEAIRLFKK-MEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEF 395

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           L+EM   G PPN V  S I+ G C  G L+EA ++F  +  R ++   NT+ +  IL++
Sbjct: 396 LSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVM--PNTLTF-SILVD 451



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 20/234 (8%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           +KG + N  +YNAL   YCL                  + ++ E  ++ E M    C PD
Sbjct: 471 EKGVEPNIYTYNALMNGYCL------------------RCKMNEARKVFEIMVGKGCAPD 512

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           + +Y  +I      R +D    +  +M    +  + + Y T++ GLC  GR++   ELF+
Sbjct: 513 LHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFK 572

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           +M  +G+L     Y +L+ GL   G + +A  L K + +     D+ +Y  +I G+    
Sbjct: 573 KMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGG 632

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           + + A  LF     D + P   T N ++    + G  D  ++L  + + +K +V
Sbjct: 633 KLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKMMKHNV 686


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 195/436 (44%), Gaps = 48/436 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G     L++L+KM    CKP+V AY  +I  L  +R +   +  + EM K+ +  DV  Y
Sbjct: 59  GNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTY 118

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +++ G C  GRV     LF++M E  ++ ++  + +LI+GL  +  + +A  + + + +
Sbjct: 119 SSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTE 178

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  YN+++ G C   Q D+A KLF +  +   AP+  + N L+    + GR+D 
Sbjct: 179 KGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDE 238

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
              LLA+M     +                       D+F             Y+ LM  
Sbjct: 239 AKGLLAEMSHKSLTP----------------------DIF------------TYSTLMRG 264

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
             ++G  ++A  L  +M    L  N +++SI +    + G + EA E    + E    P+
Sbjct: 265 FCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPN 324

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV---ASGPTEFKYALTILHVCRSGEAEKII 538
           +  Y  L +G+C  G+++AA    R+   N+      PT   Y + I  + + G + +  
Sbjct: 325 IFIYTILIEGMCTFGKLEAA----RELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEAC 380

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI------- 591
           E+  EM   GC PN    + II G  ++G    A ++   +  +    +++T        
Sbjct: 381 ELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLSDLE 440

Query: 592 VYDEILIEHMKKKTAD 607
             DEI+ + M+  + D
Sbjct: 441 SSDEIISQFMRGSSQD 456



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 176/381 (46%), Gaps = 37/381 (9%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +P +  +  ++  L ++  +   +++++EM K   E DV+ Y T+I GLCK G      +
Sbjct: 7   QPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQ 66

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L ++M+E G   +   Y  +I+ L  +  V +A D   ++V  G   D+  Y+SI+ G C
Sbjct: 67  LLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFC 126

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
            + + ++A  LF+  V+ ++ P+                            K+ F++  D
Sbjct: 127 NLGRVNEATSLFKQMVERNVIPN----------------------------KVTFTILID 158

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
                   + K+  I  A  VFE +  KG    V  YN L+       ++ +A  LF  M
Sbjct: 159 -------GLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIM 211

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
                  N  S++I I  H +SG I EA     ++   S  P +  Y+ L +G C++G  
Sbjct: 212 DRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRP 271

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
             A  L+++ + +    P    Y++ +  +C+ G  ++  E+L  M +    PN  I + 
Sbjct: 272 QEAQELLKE-MCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTI 330

Query: 559 IISGMCKHGTLEEARKVFTNL 579
           +I GMC  G LE AR++F+NL
Sbjct: 331 LIEGMCTFGKLEAARELFSNL 351



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 146/336 (43%), Gaps = 42/336 (12%)

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G +  L  +N+++ GLC   +   A KLF+  V+    PD  T + ++    +MG     
Sbjct: 5   GLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMA 64

Query: 363 FKLLAQMEK--LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILM 419
            +LL +ME+   K +V A      + L  K+  +  A+D F E+  +G    V  Y+ ++
Sbjct: 65  LQLLKKMEEKGCKPNVVA-YNTIIDSLC-KDRLVTEAMDFFSEMVKEGIPPDVFTYSSIL 122

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
                +G V +A  LF +M   N+  N ++F+I I    +   I EA      + E    
Sbjct: 123 HGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLE 182

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLV-----RDCLGNVAS-------------------- 514
           P V  YN L  G C   ++D A  L      + C  NV S                    
Sbjct: 183 PDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGL 242

Query: 515 ---------GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
                     P  F Y+  +   C+ G  ++  E+L EM   G  PN +  S ++ G+CK
Sbjct: 243 LAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCK 302

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
           HG L+EA ++   ++E K+  E N  +Y  ILIE M
Sbjct: 303 HGHLDEAFELLKAMQESKI--EPNIFIY-TILIEGM 335



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 4/167 (2%)

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M  L L+   ++F+  +        I++A +  +++++M   P V  Y+ +  GLCK+G 
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
              A+ L++  +      P    Y   I  +C+     + ++  +EM +EG PP+    S
Sbjct: 61  TTMALQLLKK-MEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYS 119

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           +I+ G C  G + EA  +F  + ER ++    T     ILI+ + KK
Sbjct: 120 SILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFT---ILIDGLCKK 163


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 140/629 (22%), Positives = 261/629 (41%), Gaps = 109/629 (17%)

Query: 43  NSASEPHQSPPFNVQKWDPHY--LPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQ 100
           + ++  H +PPF+    + H+  + ++  +  PS+   +    H                
Sbjct: 33  HDSTSNHSAPPFS----ETHFQDVISKSIREKPSNFSNYYWLSH---------------- 72

Query: 101 FQWGPQVVTELSKLRRVTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALA 159
            Q+GP +V          PDL   VL     +P +A + F WA  Q G++ +   + A+ 
Sbjct: 73  -QFGPVIVD---------PDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAIL 122

Query: 160 YCLSRNNLFRAADQVPE---------------------------------LMDSQGRIAE 186
             L++NNL R+A  V E                                 +   +  + +
Sbjct: 123 EILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQ 182

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
            L + +KM ++   PDV     ++R+L  +  +   + V+  M +  ++  ++ Y TL+ 
Sbjct: 183 CLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLD 242

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
             CKGG+V +G +L  EM+  G   +   Y VLI GL  +G+  +A  L+ +++ +G + 
Sbjct: 243 SYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKV 302

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
               YN +I G        +A  L E  V    +P  +T N  +    ++GRM +  + L
Sbjct: 303 SAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQL 362

Query: 367 AQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKG-KGYSSVPIYNILMGALL 423
           + M  L  ++  D+  +   + G  +   +M A  +F+EL+    + ++  YN L+  L 
Sbjct: 363 SDM--LANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLC 420

Query: 424 EIGEVKKALYL-----------------------------------FGKMRGLNLEVNSL 448
             GE++ A  L                                   F +M    LE++S 
Sbjct: 421 RQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSY 480

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           +++  I   ++ GD   A     +++     P +  YN +  GLCK+G ++ A  L++  
Sbjct: 481 AYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKM 540

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
           + +    P    Y   I     +G   K  E+  EM  +G  P+ V  + +I G    G 
Sbjct: 541 VSD-GVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGR 599

Query: 569 LEEARKVFTNLRERKLLTEANTIVYDEIL 597
           LE A   F+ ++E+ +L   N I Y+ ++
Sbjct: 600 LERAFIYFSEMQEKGIL--PNVITYNSLI 626



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 108/443 (24%), Positives = 189/443 (42%), Gaps = 24/443 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           +++G   N  +YN L   LS+   F  A         +G I EML       +   K   
Sbjct: 261 QRRGCAPNDVTYNVLINGLSKKGEFEQA---------KGLIGEML-------KTGLKVSA 304

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           + Y  +I     +  L   L + EEM        V  Y + I GLCK GR+    +   +
Sbjct: 305 YTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSD 364

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M  N +L D   Y  LI G    G + KA  L  +L        +  YN+++ GLCR  +
Sbjct: 365 MLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGE 424

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKLKFSVAADLE 381
            + A +L    + + +APD  T   L+    +MG +    +   +M  E L+    A   
Sbjct: 425 LEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYAT 484

Query: 382 KFF-EFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
           +   E  +G   R   A  + EE+  KG+   + IYN+++  L ++G +++A  L  KM 
Sbjct: 485 RIVGELKLGDTSR---AFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMV 541

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              +  + ++++  I  H+E+G + +  E   +++     PSV  Y  L  G    G ++
Sbjct: 542 SDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLE 601

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A +   + +      P    Y   I  +C+    ++      EM ++G  PN+   + +
Sbjct: 602 RAFIYFSE-MQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTIL 660

Query: 560 ISGMCKHGTLEEARKVFTNLRER 582
           I+  C  G  +EA  ++  + +R
Sbjct: 661 INENCNMGNWQEALSLYKQMLDR 683



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 168/383 (43%), Gaps = 28/383 (7%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMD---------------------SQGRI 184
           KG     A+YN+  Y L +  L R +D + +L D                       G +
Sbjct: 333 KGASPTVATYNSFIYGLCK--LGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNL 390

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            +   + +++R     P +  Y  ++  L  +  L+   ++  EM  + +  D++ Y  L
Sbjct: 391 MKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTIL 450

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + G CK G +    E F EM   G+ +D   Y   I G +  G   +A  L ++++  G+
Sbjct: 451 VNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGF 510

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             DL IYN ++ GLC++   ++A +L +  V D + PD+ T   ++    E GR+    +
Sbjct: 511 PPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGRE 570

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKG-YSSVPIYNILMGA 421
           +  +M  L   +   +  +   + G   + R+  A   F E++ KG   +V  YN L+  
Sbjct: 571 IFYEM--LSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLING 628

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L ++  + +A   F +M    +  N  S++I I  +   G+  EA   + ++++    P 
Sbjct: 629 LCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPD 688

Query: 482 VAAYNCLTKGLCKIGEIDAAMML 504
              ++ L K L K  ++ A   L
Sbjct: 689 SCTHSALLKQLGKDCKLQAVRQL 711


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 124/523 (23%), Positives = 221/523 (42%), Gaps = 77/523 (14%)

Query: 121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA--------- 171
           +V EVL+     +   + F W G+QKGY+H+  +YN     L++ N  + A         
Sbjct: 7   VVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQR 66

Query: 172 -----------------------DQVPELMDS----------------------QGRIAE 186
                                  D+  EL+                          R+ +
Sbjct: 67  RGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDD 126

Query: 187 MLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
            LEI + M     C PDV  + ++++ L +   +     ++E M K   E +V++Y TL+
Sbjct: 127 ALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLL 186

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLCK GR+     L+ EM E   + D   Y   + GL    +V +ACD  + +V  G +
Sbjct: 187 DGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSK 246

Query: 306 ADLGIYNSIIG-----------------GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           AD   ++++IG                  LCR    D+A K FE  +  +  P     N 
Sbjct: 247 ADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNT 306

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLK-FSVAADLEKFFEFL--VGKEERIMMALDVFEELK 405
           L+    +  R+ +   L  +M+ +K F    +LE +   +  + K +++  A ++  E+ 
Sbjct: 307 LIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMA 366

Query: 406 GKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
             G S  V  Y+ L+  L ++G++ +A  L  +M    +  +S + +  +    ++G + 
Sbjct: 367 NYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVD 426

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
            A      +      P +  YN L  GLCK G ID A+  +   +    + P  F Y + 
Sbjct: 427 YALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCT-PDVFSYTII 485

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
           I  +CRSG+A     +  EM + G  P+ V+  +++ G+ ++G
Sbjct: 486 ITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNG 528



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 106/458 (23%), Positives = 193/458 (42%), Gaps = 60/458 (13%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S  R++E   + E M +  C+P+V +Y+ ++  L     LD   R+WEEM +     D++
Sbjct: 156 SGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLV 215

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILID----RAIYGVL-------------IEG 282
           AY + + GLCK  RV    +  R+M   G   D      + G+L             IE 
Sbjct: 216 AYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEH 275

Query: 283 LVGEGKVGKACDLLKDLVDSGYRA------------------------------------ 306
           L   G + +AC   ++++   +                                      
Sbjct: 276 LCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYC 335

Query: 307 --DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             +L  YN ++  LC+ KQ D+A +L        L+PD  T + L+    ++G++D    
Sbjct: 336 PPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACD 395

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
           LL +M K      +  +      + K  ++  AL   E +K +G +  +  YN L+  L 
Sbjct: 396 LLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLC 455

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G + +A+    KM       +  S++I I     SG    A     ++++   +P   
Sbjct: 456 KAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTV 515

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            Y+ L  GL + G  D A+ L++  L      P    + + +  +C++G+AE   EV+  
Sbjct: 516 LYHSLLDGLARNGLEDLALELLKTSLCK----PDFVMHKMVLDGLCKAGKAEDACEVVER 571

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           M   G P +     +++SG+ K G +++AR++  +  E
Sbjct: 572 MADAGFPADAFTYISVVSGLRKLGKVDKARQLVDDASE 609



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 115/273 (42%), Gaps = 6/273 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ E  E++ +M      PDV  Y+A++  L     LD    + EEM K+ V  D     
Sbjct: 354 QLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDA 413

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +++  L K G+V         MK  G   D   Y  L++GL   G++ +A   L  +V +
Sbjct: 414 SILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAA 473

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
               D+  Y  II  LCR  Q   A+ +F+  V+  + PD    + LL   A  G  D  
Sbjct: 474 KCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLA 533

Query: 363 FKLL-AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMG 420
            +LL   + K  F     + K     + K  +   A +V E +   G+ +    Y  ++ 
Sbjct: 534 LELLKTSLCKPDFV----MHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYISVVS 589

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
            L ++G+V KA  L       +  V  LS   A
Sbjct: 590 GLRKLGKVDKARQLVDDASETHTSVERLSMEKA 622



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 38/189 (20%)

Query: 396 MALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
           +A + F++++ +GY      Y+I++  L + GE+ KA  L G++R   +++N +++S+ I
Sbjct: 56  LAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVI 115

Query: 455 QCHVESGDILEACECHNKIIEMSQ-VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
               ++  + +A E    +      VP V  +N L KGLC    +  A +L         
Sbjct: 116 DGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVL--------- 166

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
                F+Y                      M + GC PN +  S ++ G+CK G L+EA 
Sbjct: 167 -----FEY----------------------MAKAGCEPNVISYSTLLDGLCKAGRLDEAC 199

Query: 574 KVFTNLRER 582
           +++  + E+
Sbjct: 200 RLWEEMVEK 208


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 124/500 (24%), Positives = 218/500 (43%), Gaps = 56/500 (11%)

Query: 119 PDLVAEVL-KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177
           P L+  VL  +   PT+A +FF     Q G+K +  ++ A+   L  N L ++A  V E 
Sbjct: 105 PQLLIRVLYSIREKPTIALRFFKCVLTQPGFKTSEYAFCAILQILVDNCLMKSAYWVMER 164

Query: 178 MDS---QGRI---------AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV 225
           + S    G +          + L + EKM RN   PDV     ++++L  +  L   L V
Sbjct: 165 IISFEMYGIVDVLIGGYLNYQCLLVFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEV 224

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285
           +  M +  +   V  Y T++   CKGG V R  +L  +M+E G       + VLI GL  
Sbjct: 225 YRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSK 284

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           +G++ +A  L++++  +G R     YN +I G C+     +A  L+E  V   ++P  ++
Sbjct: 285 KGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVAS 344

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELK 405
            N ++    + G+M +  + L+ M                                  LK
Sbjct: 345 HNTIMYGFCKEGKMSDARQQLSDM----------------------------------LK 370

Query: 406 GKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
                 +  YN L+     +G + +A  L  ++R  NL  N ++++  I      GD+  
Sbjct: 371 KNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLET 430

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A +    +I     P V  Y  L  G CK+G +  A     + L +V   P +F Y   I
Sbjct: 431 ALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEML-HVGLAPDQFAYTARI 489

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
           +   + G+  K  ++  EM  +G PP+ +  +  ++G+CK G LEEA ++      +K++
Sbjct: 490 VGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELL-----QKMI 544

Query: 586 TEANT---IVYDEILIEHMK 602
            + +    + Y   +  HM+
Sbjct: 545 RDGHVPDHVTYTSFMHAHME 564



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 117/564 (20%), Positives = 227/564 (40%), Gaps = 72/564 (12%)

Query: 92  ITDAFRKNQFQWGPQVVTELSKLRRVTPDL-----VAEVLKVENNPTLASKFFHWAGKQK 146
           I D        +   +V E     R  PD+     + ++L+ +N    A + +   G + 
Sbjct: 173 IVDVLIGGYLNYQCLLVFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMG-EY 231

Query: 147 GYKHNFASYNALAYCLSRNN-LFRAADQVPEL------------------MDSQGRIAEM 187
           G +    +YN + +   +   + RA D VP++                  +  +G + + 
Sbjct: 232 GIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQA 291

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
             ++++M +   +   + Y  +I     +  L   L +WEEM    V   V ++ T++ G
Sbjct: 292 KGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYG 351

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            CK G++    +   +M +  ++ D   Y  LI G    G +G+A  LL +L       +
Sbjct: 352 FCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFN 411

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM---DNFFK 364
           +  YN++I GLCR+   + A KL E  +   + PD  T   L+    ++G M     FF 
Sbjct: 412 IVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFD 471

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
                E L   +A D   +   +VG  K      A  + EE+  KG+   V  YN+ +  
Sbjct: 472 -----EMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNG 526

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ--- 478
           L ++G +++A  L  KM       + ++++  +  H+E+G + E  E    ++   Q   
Sbjct: 527 LCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPT 586

Query: 479 --------------------------------VPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
                                           VP+V  YN L  G CK+ ++D A     
Sbjct: 587 VVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFI 646

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
           + +      P ++ Y + I   C  G+ ++ + +  +M  +   P+     A++  + K 
Sbjct: 647 E-MQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTHGALLKKLDKD 705

Query: 567 GTLEEARKVFTNLRERKLLTEANT 590
             ++  + + + + +     +ANT
Sbjct: 706 YKVQAVQFIESLILDGDRTIDANT 729


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 124/523 (23%), Positives = 221/523 (42%), Gaps = 77/523 (14%)

Query: 121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA--------- 171
           +V EVL+     +   + F W G+QKGY+H+  +YN     L++ N  + A         
Sbjct: 7   VVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQR 66

Query: 172 -----------------------DQVPELMDS----------------------QGRIAE 186
                                  D+  EL+                          R+ +
Sbjct: 67  RGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDD 126

Query: 187 MLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
            LEI + M     C PDV  + ++++ L +   +     ++E M K   E +V++Y TL+
Sbjct: 127 ALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLL 186

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLCK GR+     L+ EM E   + D   Y   + GL    +V +ACD  + +V  G +
Sbjct: 187 DGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSK 246

Query: 306 ADLGIYNSIIG-----------------GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           AD   ++++IG                  LCR    D+A K FE  +  +  P     N 
Sbjct: 247 ADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNT 306

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLK-FSVAADLEKFFEFL--VGKEERIMMALDVFEELK 405
           L+    +  R+ +   L  +M+ +K F    +LE +   +  + K +++  A ++  E+ 
Sbjct: 307 LIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMA 366

Query: 406 GKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
             G S  V  Y+ L+  L ++G++ +A  L  +M    +  +S + +  +    ++G + 
Sbjct: 367 NYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVD 426

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
            A      +      P +  YN L  GLCK G ID A+  +   +    + P  F Y + 
Sbjct: 427 YALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCT-PDVFSYTII 485

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
           I  +CRSG+A     +  EM + G  P+ V+  +++ G+ ++G
Sbjct: 486 ITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNG 528



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 105/458 (22%), Positives = 191/458 (41%), Gaps = 60/458 (13%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S  R++E   + E M +  C+P+V +Y+ ++  L     LD   R+WEEM +     D++
Sbjct: 156 SGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLV 215

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILID----RAIYGVL-------------IEG 282
           AY + + GLCK  RV    +  R+M   G   D      + G+L             IE 
Sbjct: 216 AYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEH 275

Query: 283 LVGEGKVGKACDLLKDLVDSGYRA------------------------------------ 306
           L   G + +AC   ++++   +                                      
Sbjct: 276 LCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYC 335

Query: 307 --DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             +L  YN ++  LC+ KQ D+A +L        L+PD  T + L+    ++G++D    
Sbjct: 336 PPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACD 395

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
           LL +M K      +  +      + K  ++  AL   E +K +G +  +  YN L+  L 
Sbjct: 396 LLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLC 455

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G + +A+    KM       +  S++I I     SG    A     ++++   +P   
Sbjct: 456 KAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTV 515

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            Y+ L  GL + G  D A+ L++  L      P    + + +  +C++G+AE   EV+  
Sbjct: 516 LYHSLLDGLARNGLEDLALELLKTSLCK----PDFVMHKMVVDGLCKAGKAEDACEVVER 571

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           M   G P +      ++ G+ K G +++AR++  +  E
Sbjct: 572 MADAGFPADAFTYINVVRGLRKLGKVDKARQLVDDASE 609



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 116/274 (42%), Gaps = 8/274 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ E  E++ +M      PDV  Y+A++  L     LD    + EEM K+ V  D     
Sbjct: 354 QLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDA 413

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +++  L K G+V         MK  G   D   Y  L++GL   G++ +A   L  +V +
Sbjct: 414 SILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAA 473

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
               D+  Y  II  LCR  Q   A+ +F+  V+  + PD    + LL   A  G  D  
Sbjct: 474 KCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLA 533

Query: 363 FKLL-AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY--SSVPIYNILM 419
            +LL   + K  F     + K     + K  +   A +V E +   G+   +    N++ 
Sbjct: 534 LELLKTSLCKPDFV----MHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVR 589

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
           G L ++G+V KA  L       +  V  LS   A
Sbjct: 590 G-LRKLGKVDKARQLVDDASETHTSVERLSMEKA 622



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 38/189 (20%)

Query: 396 MALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
           +A + F++++ +GY      Y+I++  L + GE+ KA  L G++R   +++N +++S+ I
Sbjct: 56  LAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVI 115

Query: 455 QCHVESGDILEACECHNKIIEMSQ-VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
               ++  + +A E    +      VP V  +N L KGLC    +  A +L         
Sbjct: 116 DGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVL--------- 166

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
                F+Y                      M + GC PN +  S ++ G+CK G L+EA 
Sbjct: 167 -----FEY----------------------MAKAGCEPNVISYSTLLDGLCKAGRLDEAC 199

Query: 574 KVFTNLRER 582
           +++  + E+
Sbjct: 200 RLWEEMVEK 208


>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
 gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
          Length = 973

 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 112/473 (23%), Positives = 215/473 (45%), Gaps = 24/473 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           K+ G   N  +YN L Y L ++   R A +V  +M   G                    +
Sbjct: 187 KEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDV 246

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
             +L +L +M  +  KP+V++YT  IRVL   +  D   R+  +M+ +  + DV+ +  L
Sbjct: 247 ETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVL 306

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC  GR+    ++F +MK++    DR  Y  L++     G      ++   +   GY
Sbjct: 307 IQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGY 366

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  Y ++I  LC+V +  +A ++F+   Q  + P+  + N L+    +  R  +  +
Sbjct: 367 NDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALE 426

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
           L   M+             F    GK    + A+  +E +K KG    V   N ++  L 
Sbjct: 427 LFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLA 486

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G +  A  +F +++ + +  +++++++ I+C  ++    EA +    +IE + VP V 
Sbjct: 487 KSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVL 546

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           A N L   L K G  D A  +    L  +   PT+  Y   +  + R G+ ++++ +L E
Sbjct: 547 AVNSLIDTLYKAGRGDEAWRIFYQ-LKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEE 605

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIVY 593
           M     PPN +  + I+  +CK+G + +A  +  ++  +     L+  NT++Y
Sbjct: 606 MYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIY 658



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 115/508 (22%), Positives = 208/508 (40%), Gaps = 58/508 (11%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           RR   D++   L+  + P  A + F  A ++    H  AS N +                
Sbjct: 89  RRAAEDVI-HALRSADGPAEALERFRSAARKPRVAHTTASCNYML--------------- 132

Query: 175 PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
            ELM   GR+ +M E+ + M+R + K +V  + A+   L  E  L +       MK+  +
Sbjct: 133 -ELMRGHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGI 191

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
             +   Y  L+  L K G      E++R M  +G++     Y VL+        V     
Sbjct: 192 VLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLW 251

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           LL+++   G + ++  Y   I  L + K+FD+AY++      +   PD  T   L+    
Sbjct: 252 LLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLC 311

Query: 355 EMGRMDNFFKLLAQMEKL--------------KFSVAADLEKFFEFLVGKEE-------- 392
           + GR+ +   +  +M+K               KF    D +   E     +         
Sbjct: 312 DAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVV 371

Query: 393 -------------RIMMALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFG 436
                        R+  AL++F+E+K KG   VP    YN L+   L+      AL LF 
Sbjct: 372 AYTAVIDALCQVGRVFEALEMFDEMKQKGI--VPEQYSYNSLISGFLKADRFGDALELFK 429

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            M     + N  +  + I  + +SG+ ++A + +  +     VP V A N +  GL K G
Sbjct: 430 HMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSG 489

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            +  A  +  + L  +   P    Y + I    ++ + ++ +++  +M +  C P+ +  
Sbjct: 490 RLGMAKRVFHE-LKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAV 548

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKL 584
           +++I  + K G  +EA ++F  L+E  L
Sbjct: 549 NSLIDTLYKAGRGDEAWRIFYQLKEMNL 576



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 191/453 (42%), Gaps = 20/453 (4%)

Query: 144 KQKGYKHN-FASYNALA----YCLSRNNLFRAADQVPEL---------MDSQGRIAEMLE 189
           K  GY H  F +Y   +      + R  L ++   VP++         +   GR+     
Sbjct: 437 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKR 496

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +  +++     PD   YT MI+  +     D  ++++ +M ++    DV+A  +LI  L 
Sbjct: 497 VFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLY 556

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K GR      +F ++KE  +      Y  L+ GL  EGKV +   LL+++  S Y  +L 
Sbjct: 557 KAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 616

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            YN+I+  LC+    + A  +          PD S+ N ++    +  R +  F +  QM
Sbjct: 617 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM 676

Query: 370 EKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIG 426
           +K+     A L       V     +E + +  D F +   K   S    + LM  +L+  
Sbjct: 677 KKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSS--CHSLMEGILKKA 734

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            ++K++     +    + ++       I+   +    LEA E   K            YN
Sbjct: 735 GIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYN 794

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L  GL     ID A  L  + +  +  GP EF Y L +  + +S   E++++V  EM +
Sbjct: 795 SLICGLVDENLIDIAEGLFAE-MKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHR 853

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           +G     V  + IISG+ K   LE+A  ++ NL
Sbjct: 854 KGYESTYVTYNTIISGLVKSRRLEQAIDLYYNL 886



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 117/529 (22%), Positives = 224/529 (42%), Gaps = 63/529 (11%)

Query: 110 ELSKLRRVTPDLVAE-----VLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSR 164
           EL K + + PD+VA       L       +A + FH   K  G   +  +Y  +  C S+
Sbjct: 464 ELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHEL-KAMGVSPDTITYTMMIKCCSK 522

Query: 165 NNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLR 224
            + F                 E ++I   M  N C PDV A  ++I  L      D   R
Sbjct: 523 ASKFD----------------EAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWR 566

Query: 225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
           ++ ++K+  +E     Y TL+ GL + G+V     L  EM  +    +   Y  +++ L 
Sbjct: 567 IFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLC 626

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
             G V  A D+L  +   G   DL  YN++I GL + +++++A+ +F   ++  L PD++
Sbjct: 627 KNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIF-CQMKKVLIPDYA 685

Query: 345 TVNPLLVCCAEMGRM--------DNFFKLLAQMEKLKFSV-------AADLEKFFEFL-- 387
           T+  +L    ++G M        D F +  ++ ++             A +EK  EF   
Sbjct: 686 TLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEI 745

Query: 388 -------------------VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGE 427
                              + K+++ + A ++ ++ K  G S    +YN L+  L++   
Sbjct: 746 IASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENL 805

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           +  A  LF +M+ L    +  ++++ +    +S  I E  +   ++       +   YN 
Sbjct: 806 IDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNT 865

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           +  GL K   ++ A+ L  + +    S PT   Y   +  + ++G  E    + NEM + 
Sbjct: 866 IISGLVKSRRLEQAIDLYYNLMSQGFS-PTPCTYGPLLDGLLKAGRIEDAENLFNEMLEY 924

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE--ANTIVYD 594
           GC  N  I + +++G    G  E+   +F ++ ++ +  +  + TI+ D
Sbjct: 925 GCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIID 973


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/508 (23%), Positives = 222/508 (43%), Gaps = 21/508 (4%)

Query: 103 WGPQVVTELSKLRRVT-PDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           WGP V   L+    ++ P+++  V+K   +  +A ++F W  ++    H    YNA    
Sbjct: 83  WGPDVEEALNVFDEMSQPEVIVGVMKRLKDVNVAFQYFRWVERKTQQAHCPEVYNAFLMV 142

Query: 162 LSRNNLFRAADQVPELMDSQG-------------------RIAEMLEILEKMRRNLCKPD 202
           ++R       +Q+ E M   G                   ++ E   ++E MR+   +P 
Sbjct: 143 MARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKFKFRPA 202

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
             AYT +I  L+A    D  L ++ +M++   EA+V  + TL+    + GR+     L  
Sbjct: 203 FSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLD 262

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EMK N    D  +Y V I+     GKV  A     ++   G   D   Y ++IG LC+ +
Sbjct: 263 EMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKAR 322

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           + D+A +LFE    +   P     N +++     G+ D  + LL + ++     +     
Sbjct: 323 RLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYN 382

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                +G++ ++  AL + +E++     ++  YNIL+  L + GE++ AL +   M+   
Sbjct: 383 CILTCLGRKGKVEEALRIHDEMRQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAG 442

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           L  N ++ +I I    ++  + EAC     +      P    +  L  GL + G +D A 
Sbjct: 443 LFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAY 502

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            L    L +    P    Y   I +  + G  E   ++  EM   GC P+ ++ ++ +  
Sbjct: 503 SLYEKML-DSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDC 561

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANT 590
           + K G +E+ R +F  ++ + L+ +  +
Sbjct: 562 VFKAGEVEKGRALFEEIKAQGLVPDVRS 589



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 113/440 (25%), Positives = 190/440 (43%), Gaps = 21/440 (4%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G  H   S ++  +C   + L R           +GR+ +   + EKM  +   P+V  Y
Sbjct: 472 GLDHKVCSPDSRTFCSLIDGLGR-----------RGRVDDAYSLYEKMLDSDQIPNVVVY 520

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           T++I+        +   ++++EM       D+M   + +  + K G V +G  LF E+K 
Sbjct: 521 TSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKA 580

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G++ D   Y +LI GLV  G   +   L  ++ + G   D+  YN++I G C+  + DK
Sbjct: 581 QGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDK 640

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK-FFE 385
           AY+L E      L P   T   ++   A++ R+D  + L  + +    S+  DL    + 
Sbjct: 641 AYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAK----SIGVDLNVVIYS 696

Query: 386 FLV---GKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
            L+   GK  RI  A  + EEL  KG + +   +N L+ AL++  E+ +A   F  M+ L
Sbjct: 697 SLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNL 756

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
               N++++SI I          +A     ++ +    P+   Y  +  GL K G +  A
Sbjct: 757 KCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEA 816

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
             L  D        P    Y   I  +  + +A     V  E   +GC  N   C  ++ 
Sbjct: 817 RGLF-DRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLD 875

Query: 562 GMCKHGTLEEARKVFTNLRE 581
            + K   LE+A  V   LRE
Sbjct: 876 ALHKADCLEQAAIVGAVLRE 895



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 152/340 (44%), Gaps = 23/340 (6%)

Query: 294 DLLKDLVDSGYRADLGIYNSI----IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
           D L+ +++    A  G+ N +    +    +  +  +A+ + E+  +    P FS    L
Sbjct: 150 DYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTL 209

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY 409
           +   +   R D    L  QM+++ +     L      +  +E RI  AL + +E+K   +
Sbjct: 210 IGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSF 269

Query: 410 SS-VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           ++ + +YN+ +    ++G+V  A   F +M+   L  + ++++  I    ++  + EA E
Sbjct: 270 TADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVE 329

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV-----RDCLGNVASGPTEFKYAL 523
              ++     VP V AYN +  G    G+ D A  L+     + C+      P+   Y  
Sbjct: 330 LFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCI------PSVIAYNC 383

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            +  + R G+ E+ + + +EM Q+   PN    + +I  +CK G LE A KV   ++E  
Sbjct: 384 ILTCLGRKGKVEEALRIHDEMRQDA-APNLTTYNILIDMLCKAGELEAALKVQDTMKEAG 442

Query: 584 LLTEANTIVYDEILIEHM-KKKTADLVLSGLKFFGLESKL 622
           L     T+    I+I+ + K +  D   S   F GL+ K+
Sbjct: 443 LFPNIMTV---NIMIDRLCKAQKLDEACS--IFLGLDHKV 477


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1080

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/473 (23%), Positives = 215/473 (45%), Gaps = 24/473 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           K+ G   N  +YN L Y L ++   R A +V  +M   G                    +
Sbjct: 152 KEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDV 211

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
             +L +L +M  +  KP+V++YT  IRVL   +  D   R+  +M+ +  + DV+ +  L
Sbjct: 212 ETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVL 271

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC  GR+    ++F +MK++    DR  Y  L++     G      ++   +   GY
Sbjct: 272 IQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGY 331

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  Y ++I  LC+V +  +A ++F+   Q  + P+  + N L+    +  R  +  +
Sbjct: 332 NDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALE 391

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
           L   M+             F    GK    + A+  +E +K KG    V   N ++  L 
Sbjct: 392 LFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLA 451

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G +  A  +F +++ + +  +++++++ I+C  ++    EA +    +IE + VP V 
Sbjct: 452 KSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVL 511

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           A N L   L K G  D A  +    L  +   PT+  Y   +  + R G+ ++++ +L E
Sbjct: 512 AVNSLIDTLYKAGRGDEAWRIFYQ-LKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEE 570

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIVY 593
           M     PPN +  + I+  +CK+G + +A  +  ++  +     L+  NT++Y
Sbjct: 571 MYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIY 623



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 112/490 (22%), Positives = 199/490 (40%), Gaps = 57/490 (11%)

Query: 145  QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
               Y  N  +YN +  CL +N                G + + L++L  M    C PD+ 
Sbjct: 573  HSNYPPNLITYNTILDCLCKN----------------GAVNDALDMLYSMTTKGCIPDLS 616

Query: 205  AYTAMIRVLAAERNLDACLRVWEEMKKDLV------------------------------ 234
            +Y  +I  L  E   +    ++ +MKK L+                              
Sbjct: 617  SYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYF 676

Query: 235  -----EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
                 + D  +  +L+ G+ K   + +  E    +  +GI +D      LI+ L  + K 
Sbjct: 677  LQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKA 736

Query: 290  GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
             +A +L+K     G     G+YNS+I GL      D A  LF    +    PD  T N L
Sbjct: 737  LEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLL 796

Query: 350  LVCCAEMGRMDNFFKLLAQMEKLKF-SVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
            L    +  R++   K+  +M +  + S           LV K  R+  A+D++  L  +G
Sbjct: 797  LDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLV-KSRRLEQAIDLYYNLMSQG 855

Query: 409  YSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
            +S  P  Y  L+  LL+ G ++ A  LF +M     + N   ++I +  H  +G+  + C
Sbjct: 856  FSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVC 915

Query: 468  ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
                 +++    P + +Y  +   LCK G+++  +   R  L  +   P    Y L I  
Sbjct: 916  HLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLL-EMGLEPDLITYNLLIDG 974

Query: 528  VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
            + +S   E+ + + NEM ++G  PN    +++I  + K G   EA K++  L  +    +
Sbjct: 975  LGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGW--K 1032

Query: 588  ANTIVYDEIL 597
             N   Y+ ++
Sbjct: 1033 PNVFTYNALI 1042



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 115/508 (22%), Positives = 208/508 (40%), Gaps = 58/508 (11%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           RR   D++   L+  + P  A + F  A ++    H  AS N +                
Sbjct: 54  RRAAEDVI-HALRSADGPAEALERFRSAARKPRVAHTTASCNYML--------------- 97

Query: 175 PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
            ELM   GR+ +M E+ + M+R + K +V  + A+   L  E  L +       MK+  +
Sbjct: 98  -ELMRGHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGI 156

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
             +   Y  L+  L K G      E++R M  +G++     Y VL+        V     
Sbjct: 157 VLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLW 216

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           LL+++   G + ++  Y   I  L + K+FD+AY++      +   PD  T   L+    
Sbjct: 217 LLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLC 276

Query: 355 EMGRMDNFFKLLAQMEKL--------------KFSVAADLEKFFEFLVGKEE-------- 392
           + GR+ +   +  +M+K               KF    D +   E     +         
Sbjct: 277 DAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVV 336

Query: 393 -------------RIMMALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFG 436
                        R+  AL++F+E+K KG   VP    YN L+   L+      AL LF 
Sbjct: 337 AYTAVIDALCQVGRVFEALEMFDEMKQKGI--VPEQYSYNSLISGFLKADRFGDALELFK 394

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            M     + N  +  + I  + +SG+ ++A + +  +     VP V A N +  GL K G
Sbjct: 395 HMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSG 454

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            +  A  +  + L  +   P    Y + I    ++ + ++ +++  +M +  C P+ +  
Sbjct: 455 RLGMAKRVFHE-LKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAV 513

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKL 584
           +++I  + K G  +EA ++F  L+E  L
Sbjct: 514 NSLIDTLYKAGRGDEAWRIFYQLKEMNL 541



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 191/453 (42%), Gaps = 20/453 (4%)

Query: 144 KQKGYKHN-FASYNALA----YCLSRNNLFRAADQVPEL---------MDSQGRIAEMLE 189
           K  GY H  F +Y   +      + R  L ++   VP++         +   GR+     
Sbjct: 402 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKR 461

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +  +++     PD   YT MI+  +     D  ++++ +M ++    DV+A  +LI  L 
Sbjct: 462 VFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLY 521

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K GR      +F ++KE  +      Y  L+ GL  EGKV +   LL+++  S Y  +L 
Sbjct: 522 KAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 581

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            YN+I+  LC+    + A  +          PD S+ N ++    +  R +  F +  QM
Sbjct: 582 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM 641

Query: 370 EKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIG 426
           +K+     A L       V     +E + +  D F +   K   S    + LM  +L+  
Sbjct: 642 KKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSC--HSLMEGILKKA 699

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            ++K++     +    + ++       I+   +    LEA E   K            YN
Sbjct: 700 GIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYN 759

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L  GL     ID A  L  + +  +  GP EF Y L +  + +S   E++++V  EM +
Sbjct: 760 SLICGLVDENLIDIAEGLFAE-MKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHR 818

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           +G     V  + IISG+ K   LE+A  ++ NL
Sbjct: 819 KGYESTYVTYNTIISGLVKSRRLEQAIDLYYNL 851



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 127/571 (22%), Positives = 229/571 (40%), Gaps = 99/571 (17%)

Query: 110 ELSKLRRVTPDLVAE-----VLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSR 164
           EL K + + PD+VA       L       +A + FH   K  G   +  +Y  +  C S+
Sbjct: 429 ELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHEL-KAMGVSPDTITYTMMIKCCSK 487

Query: 165 NNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLR 224
            + F                 E ++I   M  N C PDV A  ++I  L      D   R
Sbjct: 488 ASKFD----------------EAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWR 531

Query: 225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
           ++ ++K+  +E     Y TL+ GL + G+V     L  EM  +    +   Y  +++ L 
Sbjct: 532 IFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLC 591

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
             G V  A D+L  +   G   DL  YN++I GL + +++++A+ +F   ++  L PD++
Sbjct: 592 KNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIF-CQMKKVLIPDYA 650

Query: 345 TVNPLLVCCAEMGRM--------DNFFKLLAQMEKLKFSV-------AADLEKFFEFL-- 387
           T+  +L    ++G M        D F +  ++ ++             A +EK  EF   
Sbjct: 651 TLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEI 710

Query: 388 -------------------VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGE 427
                              + K+++ + A ++ ++ K  G S    +YN L+  L++   
Sbjct: 711 IASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENL 770

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           +  A  LF +M+ L    +  ++++ +    +S  I E  +   ++       +   YN 
Sbjct: 771 IDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNT 830

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           +  GL K   ++ A+ L  + +    S PT   Y   +  + ++G  E    + NEM + 
Sbjct: 831 IISGLVKSRRLEQAIDLYYNLMSQGFS-PTPCTYGPLLDGLLKAGRIEDAENLFNEMLEY 889

Query: 548 GCPPN-----------------EVIC------------------SAIISGMCKHGTLEEA 572
           GC  N                 E +C                  + II  +CK G L + 
Sbjct: 890 GCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDG 949

Query: 573 RKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
              F  L E  L  E + I Y+ +LI+ + K
Sbjct: 950 LTYFRQLLEMGL--EPDLITYN-LLIDGLGK 977



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 119/268 (44%), Gaps = 8/268 (2%)

Query: 177  LMDSQG---RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
            L+D+ G   RI EML++ E+M R   +     Y  +I  L   R L+  + ++  +    
Sbjct: 796  LLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQG 855

Query: 234  VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
                   Y  L+ GL K GR+     LF EM E G   +  IY +L+ G    G   K C
Sbjct: 856  FSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVC 915

Query: 294  DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
             L +D+VD G   D+  Y  II  LC+  Q +     F   ++  L PD  T N L+   
Sbjct: 916  HLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGL 975

Query: 354  AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS- 410
             +  R++    L  +M+K    +  +L  +   +  +GK  +   A  ++EEL  KG+  
Sbjct: 976  GKSKRLEEAVSLFNEMQKK--GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKP 1033

Query: 411  SVPIYNILMGALLEIGEVKKALYLFGKM 438
            +V  YN L+      G    A   +G+M
Sbjct: 1034 NVFTYNALIRGYSVSGSTDSAYAAYGRM 1061



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 156/334 (46%), Gaps = 21/334 (6%)

Query: 155  YNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
            YN+L   L   NL   A         +G  AEM E+        C PD F Y  ++  + 
Sbjct: 758  YNSLICGLVDENLIDIA---------EGLFAEMKELG-------CGPDEFTYNLLLDAMG 801

Query: 215  AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
                ++  L+V EEM +   E+  + Y T+I GL K  R+ +  +L+  +   G      
Sbjct: 802  KSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPC 861

Query: 275  IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
             YG L++GL+  G++  A +L  ++++ G +A+  IYN ++ G       +K   LF+  
Sbjct: 862  TYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDM 921

Query: 335  VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEE 392
            V   + PD  +   ++    + G++++      Q+  L+  +  DL  +   +  +GK +
Sbjct: 922  VDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQL--LEMGLEPDLITYNLLIDGLGKSK 979

Query: 393  RIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
            R+  A+ +F E++ KG   ++  YN L+  L + G+  +A  ++ ++     + N  +++
Sbjct: 980  RLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYN 1039

Query: 452  IAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
              I+ +  SG    A   + ++I    +P+ + Y
Sbjct: 1040 ALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTY 1073



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 168/398 (42%), Gaps = 39/398 (9%)

Query: 184  IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
            I + +E  E +  +    D F    +I+ L  ++       + ++ K   V      Y +
Sbjct: 701  IEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNS 760

Query: 244  LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
            LI GL     +     LF EMKE G   D   Y +L++ +    ++ +   + +++   G
Sbjct: 761  LICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKG 820

Query: 304  YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            Y +    YN+II GL + ++ ++A  L+   +    +P   T  PLL    + GR+++  
Sbjct: 821  YESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAE 880

Query: 364  KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALL 423
             L  +M  L++   A+                                  IYNIL+    
Sbjct: 881  NLFNEM--LEYGCKAN--------------------------------CTIYNILLNGHR 906

Query: 424  EIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
              G  +K  +LF  M  +G+N ++   S++I I    ++G + +      +++EM   P 
Sbjct: 907  IAGNTEKVCHLFQDMVDQGINPDIK--SYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPD 964

Query: 482  VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
            +  YN L  GL K   ++ A+ L  + +      P  + Y   ILH+ ++G+A +  ++ 
Sbjct: 965  LITYNLLIDGLGKSKRLEEAVSLFNE-MQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMY 1023

Query: 542  NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             E+  +G  PN    +A+I G    G+ + A   +  +
Sbjct: 1024 EELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRM 1061



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 106/244 (43%), Gaps = 19/244 (7%)

Query: 145  QKGYKHNFASYNALAYCLSRN-NLFRAADQVPELMDS------------------QGRIA 185
            +KGY+  + +YN +   L ++  L +A D    LM                     GRI 
Sbjct: 818  RKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIE 877

Query: 186  EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
            +   +  +M    CK +   Y  ++       N +    ++++M    +  D+ +Y  +I
Sbjct: 878  DAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIII 937

Query: 246  MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              LCK G++  G   FR++ E G+  D   Y +LI+GL    ++ +A  L  ++   G  
Sbjct: 938  DTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIV 997

Query: 306  ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
             +L  YNS+I  L +  +  +A K++E  +     P+  T N L+   +  G  D+ +  
Sbjct: 998  PNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAA 1057

Query: 366  LAQM 369
              +M
Sbjct: 1058 YGRM 1061


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 197/401 (49%), Gaps = 15/401 (3%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+     +L K+ +   +PD   +T +IR L  E  +   L ++++M  +  + +V+ Y 
Sbjct: 119 RLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYG 178

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TLI GLCK G       L R M++     D  +Y  +I+ L  + +V +A +L   +V  
Sbjct: 179 TLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQ 238

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD---FSTVNPLLVCCAEMGRM 359
           G   D+  Y S+I  LC + ++     L    +   + PD   FSTV   L  C E G++
Sbjct: 239 GISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDAL--CKE-GKI 295

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYN 416
                ++  M  +   V  ++  +   + G   +  +  A+ VF+ +   GY+ +V  YN
Sbjct: 296 TEAHDVVDMM--IIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYN 353

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ-CHVESGDILEACECHNKIIE 475
            L+    +I  + KA YLF +M    L  N+++++  +  CHV  G + +A    ++++ 
Sbjct: 354 TLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHV--GRLQDAIALFHEMVA 411

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
             Q+P +A Y  L   LCK   +D AM L++   G+    P    Y + I  +CR+GE E
Sbjct: 412 HGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGS-NMDPDIQIYTIVIDGMCRAGELE 470

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
              ++ + ++ +G  PN    + +I+G+C+ G L+EA K+F
Sbjct: 471 AARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLF 511



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 128/281 (45%), Gaps = 8/281 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+I E  ++++ M     +P+V  Y A++     +  +D  ++V++ M  +    +V++
Sbjct: 292 EGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVIS 351

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI G CK  R+ +   LF EM +  ++ +   Y  L+      G++  A  L  ++V
Sbjct: 352 YNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH-XCHVGRLQDAIALFHEMV 410

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   DL  Y  ++  LC+    D+A  L +     ++ PD      ++      G ++
Sbjct: 411 AHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELE 470

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYNI 417
               + + +      +  ++  +   + G   R ++  A  +F E+ G G S     YN 
Sbjct: 471 AARDIFSNLSSK--GLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNT 528

Query: 418 LMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQC 456
           +   LL+  E  +A+ L  +M  RG + +V++ +  + + C
Sbjct: 529 ITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLC 569



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 18/224 (8%)

Query: 145 QKGYKHNFASYNAL--AYC-LSRNN----LFRAADQ---VPELMDSQ--------GRIAE 186
             GY  N  SYN L   YC + R +    LF    Q   +P  +           GR+ +
Sbjct: 342 HNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGRLQD 401

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
            + +  +M  +   PD+  Y  ++  L  + +LD  + + + ++   ++ D+  Y  +I 
Sbjct: 402 AIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVID 461

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           G+C+ G +    ++F  +   G+  +   Y ++I GL   G + +A  L  ++  +G   
Sbjct: 462 GMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSP 521

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           D   YN+I  GL + K+  +A +L +  +    + D ST   L+
Sbjct: 522 DGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLV 565



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 80/169 (47%), Gaps = 10/169 (5%)

Query: 170 AADQVPEL---------MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLD 220
           A  Q+P+L         +  +  + E + +L+ +  +   PD+  YT +I  +     L+
Sbjct: 411 AHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELE 470

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280
           A   ++  +    +  +V  Y  +I GLC+ G +   ++LF EM  NG   D   Y  + 
Sbjct: 471 AARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTIT 530

Query: 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
           +GL+   +  +A  LL++++  G+ AD+     ++  LC  K  D++ K
Sbjct: 531 QGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDK-LDQSVK 578



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 42/218 (19%), Positives = 84/218 (38%), Gaps = 9/218 (4%)

Query: 409 YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           Y S   +N      L    +  AL  F +M  ++   +++ F+  +    ++        
Sbjct: 31  YFSSLSHNRFHSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFS 90

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
             N++      P V   N L    C +  +  A  ++   L  +   P    +   I  +
Sbjct: 91  LSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKIL-KLGHQPDTATFTTLIRGL 149

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C  G+    + + ++M  EG  PN V    +I+G+CK G    A ++  ++ +     + 
Sbjct: 150 CVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGN--CQP 207

Query: 589 NTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKG 626
           + +VY  I+    K +         + F L SK+  +G
Sbjct: 208 DVVVYTSIIDSLCKDRQVT------EAFNLFSKMVGQG 239


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 147/624 (23%), Positives = 248/624 (39%), Gaps = 106/624 (16%)

Query: 56  VQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTEL--SK 113
           V+ +     P+ K +     P   +    ++ I   I D  R +   W    +  +    
Sbjct: 22  VRHYTARSFPSGKPEREHLTPDFVRRADLVTSIVETIKDV-RLDGSSWSVHNIRNVLGPV 80

Query: 114 LRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQ 173
             +V    VA VL+       A  FF WAG+Q G++H+  +YN L   L     +     
Sbjct: 81  HGQVLGSHVAAVLRSLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYA 140

Query: 174 VPELMDSQG-------------------RIAEMLEILEKMRRNLCKPDVFAY-------- 206
           + E M   G                   R  + +   E M+R  CKPD+  +        
Sbjct: 141 IHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLC 200

Query: 207 ----------------------------TAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
                                       TAM+R L   + +     V+ +M+K     D 
Sbjct: 201 KAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDA 260

Query: 239 MAYVTLIMG-----------------------------------LCKGGRVVRGHELFRE 263
           +AY T+I G                                   LCK G + R  ELFR 
Sbjct: 261 IAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRV 320

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M  +G   +  IY  LI G    G++ +AC L  ++V++GYR D+  +  +I GLC+   
Sbjct: 321 MAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGN 380

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           F++A K FE  ++    P+  T   ++   +++GR+ N F+++  M  +      D   +
Sbjct: 381 FEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGM--IAHGCFPDSVTY 438

Query: 384 FEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKAL-YLF--GK 437
              L G  K  R+  A  + +EL K     ++ +Y+ L+  L + G V+  L  LF   K
Sbjct: 439 ICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSK 498

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
               NL+       I   C  ++G + EAC    +++     P    YN L  GLC+  E
Sbjct: 499 AAAENLDPGLCCSIIVGLC--KTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRE 556

Query: 498 --IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
             ++ A  L+ D L  V   P    Y    + +C+ GE ++ +++L E +  G   + V 
Sbjct: 557 NRVERAFALLHD-LEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVA 615

Query: 556 CSAIISGMCKHGTLEEARKVFTNL 579
            +A+ +G+C  G ++ A  +F  +
Sbjct: 616 YTALCTGLCYQGQVDRAVSLFQEM 639



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 185/393 (47%), Gaps = 14/393 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+A    I++ M  + C PD   Y  ++        LD   ++ +E+ K     ++  Y
Sbjct: 414 GRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLY 473

Query: 242 VTLIMGLCKGGRVVRG-HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
            +L+ GLC GG V     +LF + K     +D  +   +I GL   G++ +AC + + +V
Sbjct: 474 SSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMV 533

Query: 301 DSGYRADLGIYNSIIGGLCRVKQ--FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
             G + D   YN +I GLCR ++   ++A+ L          PD  T  PL +   ++G 
Sbjct: 534 SEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGE 593

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIY 415
           +D   K+L +     ++  AD+  +     G   + ++  A+ +F+E+ +  G      Y
Sbjct: 594 VDRAVKMLEEASSRGWN--ADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAY 651

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             ++  L++  +++ A   F +M G   +    +++  +Q    +G++ EA      ++ 
Sbjct: 652 CCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLA 711

Query: 476 MSQ-VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVCRSG 532
             + V SV  Y+ L  G CK  ++DAA+ L  D +  GNV   PT    A     + RSG
Sbjct: 712 RGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNV---PTAVTSASLFDGLVRSG 768

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
           + EK  E+L EM   G PP+    +AI+ G+ K
Sbjct: 769 KTEKAQELLQEMAAGGSPPHAATFTAILDGLRK 801



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 192/440 (43%), Gaps = 43/440 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GR+ E   + ++M     +PDV  +T MI  L    N +   + +EEM +   + +V+ 
Sbjct: 343 SGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVT 402

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL---- 296
           Y T+I GL K GRV     + + M  +G   D   Y  L++G    G++ +A  LL    
Sbjct: 403 YTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELD 462

Query: 297 ---------------KDLVDSGY-----------------RADLGIYNSIIGGLCRVKQF 324
                          K L D G                    D G+  SII GLC+  + 
Sbjct: 463 KCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRL 522

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           D+A ++F+  V +   PD +T N L+  +C +   R++  F LL  +E + +    D   
Sbjct: 523 DEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGY--LPDAVT 580

Query: 383 FFEFLVG--KEERIMMALDVFEELKGKGYSS-VPIYNILMGALLEIGEVKKALYLFGKMR 439
           +    +G  K   +  A+ + EE   +G+++ V  Y  L   L   G+V +A+ LF +M 
Sbjct: 581 YTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMV 640

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
                 ++ ++   I   ++   + +AC+  +++I   Q P+VA Y  L + LC  G +D
Sbjct: 641 RQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVD 700

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A       L       +   Y   I   C++ + +  +++  +M   G  P  V  +++
Sbjct: 701 EAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASL 760

Query: 560 ISGMCKHGTLEEARKVFTNL 579
             G+ + G  E+A+++   +
Sbjct: 761 FDGLVRSGKTEKAQELLQEM 780



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 183/405 (45%), Gaps = 11/405 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G   E L++L+ M    C P    Y  ++  L     L+    ++  M       + + Y
Sbjct: 274 GHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIY 333

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI G  K GR+     LF EM E G   D   + V+I+GL   G   +A    ++++ 
Sbjct: 334 TSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMR 393

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + ++  Y +II GL ++ +   A+++ +  +     PD  T   LL    ++GR+D 
Sbjct: 394 GGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDE 453

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMAL-DVFEELKGKGYSSVP--IYN 416
             +LL +++K   S + +L+ +   + G      +   L D+FE+ K    +  P    +
Sbjct: 454 AAQLLDELDKC--SSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCS 511

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKII 474
           I++G L + G + +A  +F +M     + ++ +++I I   C      +  A    + + 
Sbjct: 512 IIVG-LCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLE 570

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
            +  +P    Y  L  GLCKIGE+D A+ ++ +   +         Y      +C  G+ 
Sbjct: 571 MVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEA-SSRGWNADVVAYTALCTGLCYQGQV 629

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           ++ + +  EM ++G  P+      II+G+ K   LE+A K F  +
Sbjct: 630 DRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEM 674



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 111/270 (41%), Gaps = 25/270 (9%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
            +G K +  +YN L    C SR N                R+     +L  +      PD
Sbjct: 534 SEGCKPDATTYNILINGLCRSREN----------------RVERAFALLHDLEMVGYLPD 577

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
              YT +   L     +D  +++ EE       ADV+AY  L  GLC  G+V R   LF+
Sbjct: 578 AVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQ 637

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EM   G   D A Y  +I GL+   K+  AC    +++  G +  +  Y +++  LC   
Sbjct: 638 EMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAG 697

Query: 323 QFDKAYKLFE-VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-EKLKFSVAADL 380
             D+A+  FE +  + +L       + L+    +  ++D   KL   M  +     A   
Sbjct: 698 NVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTS 757

Query: 381 EKFFEFLV--GKEERIMMALDVFEELKGKG 408
              F+ LV  GK E+   A ++ +E+   G
Sbjct: 758 ASLFDGLVRSGKTEK---AQELLQEMAAGG 784



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 14/179 (7%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           +A AYC   N L +             ++ +  +  ++M     KP V  YTA+++ L  
Sbjct: 647 DAAAYCCIINGLIKGK-----------KLEDACKFFDEMIGKGQKPTVATYTALVQALCH 695

Query: 216 ERNLDACLRVWEEM--KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
             N+D     +E M  + +LV   VM Y  LI G CK  +V    +LF +M   G +   
Sbjct: 696 AGNVDEAFHRFEGMLARGELV-GSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTA 754

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
                L +GLV  GK  KA +LL+++   G       + +I+ GL +  +  K  KL +
Sbjct: 755 VTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQ 813



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 63/165 (38%), Gaps = 18/165 (10%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKM 194
           A KFF      KG K   A+Y AL   L                   G + E     E M
Sbjct: 667 ACKFFDEM-IGKGQKPTVATYTALVQALCH----------------AGNVDEAFHRFEGM 709

Query: 195 -RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
             R      V  Y A+I        +DA L+++E+M         +   +L  GL + G+
Sbjct: 710 LARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGK 769

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
             +  EL +EM   G     A +  +++GL    + GK   L+++
Sbjct: 770 TEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/482 (24%), Positives = 215/482 (44%), Gaps = 56/482 (11%)

Query: 150 HNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAM 209
           ++  SYN L  C  R +      Q+P            L +L KM +   +PD+   +++
Sbjct: 113 YDLYSYNILINCFCRRS------QLPL----------ALAVLGKMMKLGYEPDIVTLSSL 156

Query: 210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
           +      + +   + + ++M +   + D + + TLI GL    +      L  +M + G 
Sbjct: 157 LNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGC 216

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
             D   YG ++ GL   G +  A  LLK +      AD+ IYN+II GLC+ K  D A+ 
Sbjct: 217 QPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFA 276

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-------------------- 369
           LF       + PD  T N L+ C    GR  +  +LL+ M                    
Sbjct: 277 LFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFV 336

Query: 370 -------------EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVP 413
                        E +K S+  D+  +   + G    +R+  A  +FE +  K  + +V 
Sbjct: 337 KEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV 396

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN L+    +   V++ + LF +M    L  N+++++  IQ   ++GD   A +   K+
Sbjct: 397 TYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 456

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           +     P +  Y+ L  GLCK G+++ A ++V + L      P  + Y + I  +C++G+
Sbjct: 457 VSDGVPPDIITYSILLDGLCKYGKLEKA-LVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK 515

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NT 590
            E   ++   ++ +G  PN +I + +ISG C+ G  EEA  +F  ++E   L ++   NT
Sbjct: 516 VEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNT 575

Query: 591 IV 592
           ++
Sbjct: 576 LI 577



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 124/495 (25%), Positives = 218/495 (44%), Gaps = 55/495 (11%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           +G   + ASY+     LSRN L        +L D+ G   EM++      R L  P +  
Sbjct: 36  RGVYFSAASYDYREK-LSRNALLNL-----KLDDAIGLFGEMVQ-----SRPL--PSIVE 82

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           +  ++  +A  +  D  + + E M+   +  D+ +Y  LI   C+  ++     +  +M 
Sbjct: 83  FNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 142

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           + G   D      L+ G     ++  A  L+  +V+ GY+ D   +N++I GL    +  
Sbjct: 143 KLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKAS 202

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +A  L +  VQ    PD  T   ++    + G +D    LL +MEK K  + AD+  +  
Sbjct: 203 EAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGK--IEADVVIYNT 260

Query: 386 FLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            + G  K + I  A  +F +++ KG    V  YN L+  L   G    A  L   M    
Sbjct: 261 IIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERK 320

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA- 501
           +  N ++FS  I   V+ G ++EA + ++++I+ S  P +  Y+ L  G C    +D A 
Sbjct: 321 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 380

Query: 502 ----MMLVRDCLGNVASGPTEFK-----------------------------YALTILHV 528
               +M+ +DC  NV +  T  K                             Y   I  +
Sbjct: 381 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
            ++G+ +   ++  +M  +G PP+ +  S ++ G+CK+G LE+A  VF  L++ K+  E 
Sbjct: 441 FQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM--EP 498

Query: 589 NTIVYDEILIEHMKK 603
           +   Y+ I+IE M K
Sbjct: 499 DIYTYN-IMIEGMCK 512



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 157/340 (46%), Gaps = 36/340 (10%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------------PELMDS---QGRI 184
           + KG + +  +YN+L  CL     +  A ++                  L+D+   +G++
Sbjct: 282 ETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKL 341

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  ++ ++M +    PD+F Y+++I        LD    ++E M       +V+ Y TL
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK  RV  G ELFREM + G++ +   Y  LI+GL   G    A  + K +V  G 
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  Y+ ++ GLC+  + +KA  +FE   +  + PD  T N ++    + G++++ + 
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG------KEERIMMALDVFEELKGKGYSSVP---IY 415
           L   +  LK  V  ++  +   + G      KEE    A  +F E+K  G  ++P    Y
Sbjct: 522 LFCSLS-LK-GVKPNVIIYTTMISGFCRKGLKEE----ADALFREMKEDG--TLPDSGCY 573

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           N L+ A L  G+   +  L  +MR      ++ + S+ I 
Sbjct: 574 NTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 613



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 108/466 (23%), Positives = 194/466 (41%), Gaps = 95/466 (20%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           + GYK +  ++N L + L  +N                + +E + ++++M +  C+PD+ 
Sbjct: 178 EMGYKPDTVTFNTLIHGLFLHN----------------KASEAVALVDQMVQRGCQPDLV 221

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y A++  L    ++D  L + ++M+K  +EADV+ Y T+I GLCK   +     LF +M
Sbjct: 222 TYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKM 281

Query: 265 KENGI-----------------------------LIDRAI------YGVLIEGLVGEGKV 289
           +  GI                             +I+R I      +  LI+  V EGK+
Sbjct: 282 ETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKL 341

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            +A  L  +++      D+  Y+S+I G C   + D+A  +FE+ +  D  P+  T N L
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401

Query: 350 LVCCAEMGRMDNFFKLLAQMEK-------LKFSV-------AADLE---KFFEFLVG--- 389
           +    +  R++   +L  +M +       + ++        A D +   K F+ +V    
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461

Query: 390 ---------------KEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALY 433
                          K  ++  AL VFE L K K    +  YNI++  + + G+V+    
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           LF  +    ++ N + ++  I      G   EA     ++ E   +P    YN L +   
Sbjct: 522 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARL 581

Query: 494 KIGEIDAAMMLV---RDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
           + G+  A+  L+   R C G V    T     + +LH    G  EK
Sbjct: 582 RDGDKAASAELIKEMRSC-GFVGDAST-ISMVINMLH---DGRLEK 622


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 216/461 (46%), Gaps = 27/461 (5%)

Query: 126 LKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIA 185
           L V+ N     +  H      G K + +++N L   L R +  R A  + E M S G + 
Sbjct: 163 LLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLV- 221

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
                          PD   +T +++    E +LD  LR+ E+M +       ++   ++
Sbjct: 222 ---------------PDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIV 266

Query: 246 MGLCKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
            G CK GRV       +EM  ++G   D+  +  L+ GL   G V  A +++  ++  GY
Sbjct: 267 HGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGY 326

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  YNS+I GLC++ +  +A ++ +  +  D +P+  T N L+    +  +++   +
Sbjct: 327 DPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATE 386

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG----KEERIMMALDVFEELKGKGYSSVPI-YNILM 419
            LA++   K  +  D+  F   + G    +  R+  A+++FEE++ KG       YN+L+
Sbjct: 387 -LARVLTSK-GILPDVCTFNSLIQGLCLTRNHRV--AMELFEEMRSKGCEPDEFTYNMLI 442

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            +L   G++ +AL +  +M       + ++++  I    ++    EA E  +++      
Sbjct: 443 DSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVS 502

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
            +   YN L  GLCK   ++ A  L+ D +      P ++ Y   + H CR G+ +K  +
Sbjct: 503 RNSVTYNTLIDGLCKSRRVEDAAQLM-DQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAAD 561

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           ++  MT  GC P+ V    +ISG+CK G +E A K+  +++
Sbjct: 562 IVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQ 602



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 182/418 (43%), Gaps = 11/418 (2%)

Query: 181 QGRIAEMLEILEKM-RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +GR+ + L  +++M  ++   PD + +  ++  L    ++   + + + M ++  + DV 
Sbjct: 272 EGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVY 331

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y ++I GLCK G V    E+  +M       +   Y  LI  L  E +V +A +L + L
Sbjct: 332 TYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVL 391

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   D+  +NS+I GLC  +    A +LFE        PD  T N L+      G++
Sbjct: 392 TSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKL 451

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSSVPI-Y 415
           D    +L QME    S  A     +  L+    K  +   A ++F+E++  G S   + Y
Sbjct: 452 DEALNMLKQME---LSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTY 508

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+  L +   V+ A  L  +M     + +  +++  +      GDI +A +    +  
Sbjct: 509 NTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTS 568

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P +  Y  L  GLCK G ++ A  L+R  +       T   Y   I  + R  +  
Sbjct: 569 NGCEPDIVTYGTLISGLCKAGRVEVASKLLRS-IQMKGINLTPHAYNPVIQGLFRKRKTT 627

Query: 536 KIIEVLNEMTQEG-CPPNEVICSAIISGMCK-HGTLEEARKVFTNLRERKLLTEANTI 591
           + I +  EM ++   PP+ V    +  G+C   G + EA      L E+  + E +++
Sbjct: 628 EAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSL 685



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 137/332 (41%), Gaps = 40/332 (12%)

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + D+  +N +I  LCR  Q   A  + E      L PD  T   ++    E G +D  
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGA 243

Query: 363 FKLLAQMEKL-----KFSVAADLEKF----------------------------FEFLVG 389
            ++  QM +        SV   +  F                            F  LV 
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN 303

Query: 390 ---KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
              K   +  A+++ + +  +GY   V  YN ++  L ++GEVK+A+ +  +M   +   
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSP 363

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N+++++  I    +   + EA E    +     +P V  +N L +GLC       AM L 
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
            + + +    P EF Y + I  +C  G+ ++ + +L +M   GC  + +  + +I G CK
Sbjct: 424 EE-MRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
                EA ++F  +    +    N++ Y+ ++
Sbjct: 483 ANKTREAEEIFDEMEVHGV--SRNSVTYNTLI 512


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 133/563 (23%), Positives = 248/563 (44%), Gaps = 74/563 (13%)

Query: 68  KTQSPPSDPKTFQLQRHLSPIAR------FITDAFRKNQFQWGPQVVT------ELSKLR 115
           + Q PPS   T    + L+ IA+       ++ + + + F   P + T          L 
Sbjct: 54  RMQPPPS---TVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLN 110

Query: 116 RV--TPDLVAEVLKVENNPTLAS---------------KFFHWAGKQ--KGYKHNFASYN 156
           RV     ++A++LK+ + P  A+               +  H   K   +G++ +  +Y 
Sbjct: 111 RVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYG 170

Query: 157 ALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE 216
            L      N L +            G  +  + +L  M +  C+P+VFAY  +I  L  +
Sbjct: 171 TLI-----NGLCKV-----------GNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKD 214

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
           R +     ++ EM    +  D+  Y +LI  LC          L  EM ++ I+ D   +
Sbjct: 215 RQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSF 274

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
             +++ L  EGKV +A D++  ++  G   ++  Y +++ G C + + D+A K+F+  V 
Sbjct: 275 NTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVC 334

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
               P+  + N L+    ++ R+D        M+     +  D                 
Sbjct: 335 KGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMD----------------E 378

Query: 397 ALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A+ VF+ +  KG   +V  YN L+    +I  + KA+YLFG+M    L  +++++S  I 
Sbjct: 379 AVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIH 438

Query: 456 --CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
             CHVE   + +A    ++++  SQ+P++  Y  L   LCK   +  AM L++   G+  
Sbjct: 439 GLCHVER--LQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNL 496

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
               +    + I  +CR+GE E   ++ + ++ +G  P+    S +I+G+C+ G L+EA 
Sbjct: 497 DPDIQVN-NIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEAS 555

Query: 574 KVFTNLRERKLLTEANTIVYDEI 596
           K+F  + E       N  +Y+ I
Sbjct: 556 KLFREMDENG--CTLNGCIYNTI 576



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/428 (21%), Positives = 178/428 (41%), Gaps = 60/428 (14%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
             +M R    P    +  ++  +A  ++    L +  +M    +  ++     LI   C 
Sbjct: 49  FNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCH 108

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
             RV     +  ++ + G   D A +  LI G+  EGK+G+A  L   ++  G+R D+  
Sbjct: 109 LNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVT 168

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQ 368
           Y ++I GLC+V     A +L    VQ +  P+    N ++  +C                
Sbjct: 169 YGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLC---------------- 212

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGE 427
                                K+ ++  A ++F E+  KG S  +  YN L+ AL  + E
Sbjct: 213 ---------------------KDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCE 251

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
            K    L  +M    +  + +SF+  +    + G + EA +  +K+I+    P+V  Y  
Sbjct: 252 WKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTA 311

Query: 488 LTKGLCKIGEIDAAM-----MLVRDCLGNVASGPT-------------EFKYALTILHVC 529
           L  G C + E+D A+     M+ + C+ NV S  T                Y   +   C
Sbjct: 312 LMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXC 371

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
                ++ ++V + M  +GC PN +  + +I+G CK   +++A  +F  +  ++L+ +  
Sbjct: 372 CYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPD-- 429

Query: 590 TIVYDEIL 597
           T+ Y  ++
Sbjct: 430 TVTYSTLI 437



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 156/340 (45%), Gaps = 23/340 (6%)

Query: 172 DQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK 231
           + V + +  +G++ E  ++++KM +   +P+V  YTA++        +D  ++V++ M  
Sbjct: 275 NTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVC 334

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI-YGVLIEGLVGEGKVG 290
                +V++Y TLI G CK  R                 ID+AI Y  L++       + 
Sbjct: 335 KGCMPNVISYNTLINGYCKIQR-----------------IDKAIHYTXLMDXXCCYLNMD 377

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           +A  +   +V  G   ++  YN++I G C++++ DKA  LF    + +L PD  T + L+
Sbjct: 378 EAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLI 437

Query: 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKG 408
                + R+ +   L  +M  +  S   +L  +   L  + K   +  A+ + + ++G  
Sbjct: 438 HGLCHVERLQDAIALFHEM--VACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSN 495

Query: 409 YS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
               + + NI +  +   GE++ A  LF  +    L+ +  ++SI I      G + EA 
Sbjct: 496 LDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEAS 555

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
           +   ++ E     +   YN +T+G  +  E   A+ L+++
Sbjct: 556 KLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQE 595



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 113/269 (42%), Gaps = 3/269 (1%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG---RIAEMLEILEKMRRNLCKPD 202
           KG   N  SYN L     +      A     LMD       + E +++ + M    C P+
Sbjct: 335 KGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPN 394

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V +Y  +I      + +D  + ++ EM +  +  D + Y TLI GLC   R+     LF 
Sbjct: 395 VISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFH 454

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EM     + +   Y +L++ L     + +A  LLK +  S    D+ + N  I G+CR  
Sbjct: 455 EMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAG 514

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           + + A  LF       L PD  T + ++      G +D   KL  +M++   ++   +  
Sbjct: 515 ELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYN 574

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSS 411
                  +      A+ + +E+  +G+S+
Sbjct: 575 TITRGFLRNNETSRAIQLLQEMVARGFSA 603



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 62/124 (50%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           +AE + +L+ +  +   PD+      I  +     L+A   ++  +    ++ DV  Y  
Sbjct: 481 LAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSI 540

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I GLC+ G +    +LFREM ENG  ++  IY  +  G +   +  +A  LL+++V  G
Sbjct: 541 MINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARG 600

Query: 304 YRAD 307
           + AD
Sbjct: 601 FSAD 604



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 76/164 (46%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ + + +  +M      P++  Y  ++  L   R L   + + + ++   ++ D+    
Sbjct: 445 RLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNN 504

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
             I G+C+ G +    +LF  +   G+  D   Y ++I GL   G + +A  L +++ ++
Sbjct: 505 IAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDEN 564

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
           G   +  IYN+I  G  R  +  +A +L +  V    + D ST+
Sbjct: 565 GCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTM 608


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/470 (23%), Positives = 209/470 (44%), Gaps = 26/470 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           + KG + +  +YN L                   M ++G + E L IL  +  + CKPD 
Sbjct: 313 RAKGCEPDIVTYNVLI----------------NAMCNEGDVDEALNILSNLPSHGCKPDA 356

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT +++ L           +  EM  +    D + + T++  LC+ G V R  E+   
Sbjct: 357 VTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDH 416

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M E+G + D   Y  +++GL   G+V  A +LL  L   G + D   Y +++ GLC  +Q
Sbjct: 417 MSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQ 476

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           +++A +L    +  D  PD  T N ++    + G +D   +++ QM +   S   D+  +
Sbjct: 477 WERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCS--PDIVTY 534

Query: 384 FEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
              + G   E  I  A+++  +L+  G    +  +N L+  L  +   + A  L   M  
Sbjct: 535 NCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMR 594

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
            N   + L+F+  I    + G + +A E    + E   VP+ + Y+ +   L K G+  A
Sbjct: 595 SNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQA 654

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A+ L+    G     P    Y   I ++ ++G+ E+ +++L  M   G  P+     ++ 
Sbjct: 655 ALELLS---GMTNGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLA 711

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVL 610
            G+C+    + A ++   +++  L    +T  Y+++L+   + +  DL +
Sbjct: 712 YGVCREDGTDRAVRMLRRVQDTGL--SPDTTFYNDVLLGFCRDRRTDLAI 759



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 104/437 (23%), Positives = 192/437 (43%), Gaps = 12/437 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI +   ++  M      PD F +  +IR L     +   L V+++M        V+ Y
Sbjct: 233 GRIEDARRLINGMPF---PPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTY 289

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+   CK     +   L  EM+  G   D   Y VLI  +  EG V +A ++L +L  
Sbjct: 290 SILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPS 349

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + D   Y  ++  LC  +++ +  +L      ++ APD  T N ++    + G +D 
Sbjct: 350 HGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDR 409

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGYSSVPI-YNIL 418
             +++  M   +    AD+  +   L G  +  R+  A+++   LK  G     I Y  +
Sbjct: 410 AIEVVDHMS--EHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTV 467

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L    + ++A  L  +M   +   + ++F+  +    + G +  A     ++ E   
Sbjct: 468 LKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGC 527

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P +  YNC+  GLC    ID AM L+ D L +    P    +   +  +C     E   
Sbjct: 528 SPDIVTYNCIIDGLCNESCIDDAMELLSD-LQSCGCKPDIVTFNTLLKGLCGVDRWEDAE 586

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT--IVYDEI 596
           +++  M +  CPP+E+  + +I+ +C+ G L +A +    + E   +  ++T  IV D  
Sbjct: 587 QLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDA- 645

Query: 597 LIEHMKKKTADLVLSGL 613
           L++  K + A  +LSG+
Sbjct: 646 LLKAGKAQAALELLSGM 662



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 177/399 (44%), Gaps = 39/399 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + +E+L +++   CKPD  AYT +++ L +    +    +  EM       D + +
Sbjct: 440 GRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTF 499

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T++  LC+ G V R   +  +M ENG   D   Y  +I+GL  E  +  A +LL DL  
Sbjct: 500 NTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQS 559

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + D+  +N+++ GLC V +++ A +L    ++ +  PD  T N ++    + G    
Sbjct: 560 CGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKG---- 615

Query: 362 FFKLLAQ-MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
              LL Q +E LK                     +MA       +     +   Y+I++ 
Sbjct: 616 ---LLTQAIETLK---------------------IMA-------ENGCVPNSSTYSIVVD 644

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           ALL+ G+ + AL L   M   N   + ++++  I    ++G + EA +    ++     P
Sbjct: 645 ALLKAGKAQAALELLSGMT--NGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCP 702

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
               Y  L  G+C+    D A+ ++R       S  T F Y   +L  CR    +  I+ 
Sbjct: 703 DTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTF-YNDVLLGFCRDRRTDLAIDC 761

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
              M   GC P+E     ++  +   G L+EA+++  +L
Sbjct: 762 FAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASL 800



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 171/412 (41%), Gaps = 26/412 (6%)

Query: 181 QGRIAEMLEILEKMR----RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           +G I E L + + M     RN   P V     +I+ L ++  +    RV+  +      A
Sbjct: 163 RGEIDEALVLFDSMASGGGRNC--PPVVPCNILIKRLCSDGRVSDAERVFAALGP---SA 217

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
            V+ Y T++ G C+ GR+     L   M       D   +  LI  L   G++  A  + 
Sbjct: 218 TVVTYNTMVNGYCRAGRIEDARRLINGMP---FPPDTFTFNPLIRALCVRGRIPDALAVF 274

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            D++  G    +  Y+ ++   C+   + +A  L +        PD  T N L+      
Sbjct: 275 DDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNE 334

Query: 357 GRMDNFFKLLAQMEKLKFSV-AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI- 414
           G +D    +L+ +        A       + L G  ER     ++  E+     +   + 
Sbjct: 335 GDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGS-ERWKEVEELLAEMTSNNCAPDEVT 393

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           +N ++ +L + G V +A+ +   M       + +++S  +    + G + +A E  +++ 
Sbjct: 394 FNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLK 453

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEID-----AAMMLVRDCLGNVASGPTEFKYALTILHVC 529
                P   AY  + KGLC   + +      A ML  DC       P E  +   +  +C
Sbjct: 454 SYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDC------PPDEVTFNTVVASLC 507

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           + G  ++ I V+ +M++ GC P+ V  + II G+C    +++A ++ ++L+ 
Sbjct: 508 QKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQS 559



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 2/192 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + + +E L+ M  N C P+   Y+ ++  L       A L +   M       D++ 
Sbjct: 614 KGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNG--TPDLIT 671

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I  L K G++    +L R M  NG+  D   Y  L  G+  E    +A  +L+ + 
Sbjct: 672 YNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQ 731

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D+G   D   YN ++ G CR ++ D A   F   V     PD ST   LL   A  G +D
Sbjct: 732 DTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLD 791

Query: 361 NFFKLLAQMEKL 372
              +LLA +  L
Sbjct: 792 EAKRLLASLCSL 803



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 55/122 (45%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E L++L  M  N   PD   Y ++   +  E   D  +R+   ++   +  D   Y
Sbjct: 683 GKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFY 742

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +++G C+  R     + F  M  +G + D + Y +L+E L   G + +A  LL  L  
Sbjct: 743 NDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCS 802

Query: 302 SG 303
            G
Sbjct: 803 LG 804


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 201/459 (43%), Gaps = 45/459 (9%)

Query: 196 RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVV 255
           RN+  PD ++Y  +I  LA    L+    +++++    V    +AY +LI GLC      
Sbjct: 4   RNV-SPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFD 62

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
              ELF +M   G       Y V+I+     G + +ACDL+K +++ G+  D+  YN+++
Sbjct: 63  DARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVM 122

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            GLC+  + ++A  LF    +    P+  + N +++   +  ++D   ++  +ME     
Sbjct: 123 DGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAK--D 180

Query: 376 VAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
           +  D   +   + G  K  ++  A  +F+ +   G + S   YN+++  +     + +AL
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            LF  MR      +  +F+I I  H + G + EA     ++ +   VP V  Y+ L  GL
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300

Query: 493 CKIGEIDAAMMLVRDCL--------------------------------GNVASG--PTE 518
           C I  +D A  L+ D +                                  V+SG  P  
Sbjct: 301 CSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDV 360

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
             Y   +   CR+G+ E+  E+L++M   G  PN V  +A++SG+CK   L EA  VF  
Sbjct: 361 VTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQ 420

Query: 579 LRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFG 617
           ++        N   Y  +++        D    GLK FG
Sbjct: 421 MKSSG--CAPNLFTYTALILGFCSAGQVD---GGLKLFG 454



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 215/491 (43%), Gaps = 31/491 (6%)

Query: 120 DLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD 179
           D +A+  K+ +   L  K  H      G   +  +Y +L + L   N F  A ++   M+
Sbjct: 18  DGLAKAGKLNDARNLFQKLLH-----SGVTPSTVAYTSLIHGLCMANSFDDARELFADMN 72

Query: 180 -------------------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLD 220
                               +G + E  ++++KM  +   PDV  Y  ++  L     ++
Sbjct: 73  RRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVE 132

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280
             L ++ EM++     +  ++ T+I+GLC+  ++ +  ++F EM+   I  D   YG+LI
Sbjct: 133 EALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILI 192

Query: 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
           +GL   GK+ +A  L + ++DSG       YN +I G+C     D+A +LF+        
Sbjct: 193 DGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCR 252

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMAL 398
           P   T N L+    + G++D  F+LL +M         D+  +   + G     R+  A 
Sbjct: 253 PSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGH--VPDVVTYSTLISGLCSIARVDDAR 310

Query: 399 DVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
            + E++ K +   +V   N L+  L + G +K+A  +   M       + ++++  +  H
Sbjct: 311 HLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGH 370

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
             +G    A E  + ++     P+V  Y  L  GLCK   +  A  +    + +    P 
Sbjct: 371 CRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQ-MKSSGCAPN 429

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
            F Y   IL  C +G+ +  +++  EM   G  P+ V+   + + +CK G    A ++  
Sbjct: 430 LFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILR 489

Query: 578 NLRERKLLTEA 588
             RE  L +EA
Sbjct: 490 EGRE-SLRSEA 499



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 183/439 (41%), Gaps = 43/439 (9%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E L +  +M R  C P+  ++  +I  L  +  +D   +V+ EM+   +  D  +Y 
Sbjct: 130 RVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYG 189

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI GL K G++   ++LF+ M ++GI      Y V+I G+     + +A +L K +   
Sbjct: 190 ILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSK 249

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G R     +N +I   C+  + D+A++L +    D   PD  T + L+     + R+D+ 
Sbjct: 250 GCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDA 309

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
             LL  M K +       +      + K  RI  A +V + +   G S  V  YN L+  
Sbjct: 310 RHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHG 369

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
               G+ ++A  L   M    L  N ++++  +    ++  + EAC    ++      P+
Sbjct: 370 HCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPN 429

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           +  Y  L  G C  G++D  + L  +  C G     P    Y      +C+SG + + +E
Sbjct: 430 LFTYTALILGFCSAGQVDGGLKLFGEMVCAG---ISPDHVVYGTLAAELCKSGRSARALE 486

Query: 540 VLNE-------------------------------------MTQEGCPPNEVICSAIISG 562
           +L E                                     M + G  P    C+++++G
Sbjct: 487 ILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAG 546

Query: 563 MCKHGTLEEARKVFTNLRE 581
           +CK G   EAR V   + +
Sbjct: 547 LCKSGQGGEARAVLEEIMD 565



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 145/342 (42%), Gaps = 7/342 (2%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E LE+ + MR   C+P  F +  +I        LD   R+ + M  D    DV+ Y TLI
Sbjct: 238 EALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLI 297

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLC   RV     L  +M +            LI GL   G++ +A ++L  +V SG  
Sbjct: 298 SGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQS 357

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  YN+++ G CR  Q ++A +L    V   LAP+  T   L+    +  R+     +
Sbjct: 358 PDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGV 417

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGAL 422
            AQM+      A +L  +   ++G     ++   L +F E+   G S    +Y  L   L
Sbjct: 418 FAQMKS--SGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAEL 475

Query: 423 LEIGEVKKALYLFGKMR-GLNLEV-NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            + G   +AL +  + R  L  E      +  A+   +E+G +  A      ++   Q+P
Sbjct: 476 CKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLP 535

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
           +      L  GLCK G+   A  ++ + +     G    K A
Sbjct: 536 APERCASLVAGLCKSGQGGEARAVLEEIMDLAYGGKARGKAA 577



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           +G   N  +Y AL   L + N                R+ E   +  +M+ + C P++F 
Sbjct: 389 RGLAPNVVTYTALVSGLCKAN----------------RLPEACGVFAQMKSSGCAPNLFT 432

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           YTA+I    +   +D  L+++ EM    +  D + Y TL   LCK GR  R  E+ RE +
Sbjct: 433 YTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGR 492

Query: 266 ENGILIDRA----IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           E+  L   A    +Y   ++GL+  GK+  A   ++D+V  G         S++ GLC+ 
Sbjct: 493 ES--LRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKS 550

Query: 322 KQFDKAYKLFE 332
            Q  +A  + E
Sbjct: 551 GQGGEARAVLE 561


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 124/547 (22%), Positives = 248/547 (45%), Gaps = 58/547 (10%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWA-GKQKGYKHNFASYNALAYCLSR-------NNLF 168
            TP +V  V+    +  LA  FF WA     G+ H   S+N+L   L R        +LF
Sbjct: 41  TTPRIVGRVVNSLKDAKLALAFFRWAPASIPGFSHTAFSWNSLLQVLVRCKKHREAGDLF 100

Query: 169 RA---ADQVPELMD---------SQGRIAEMLEILEKMR--------------------- 195
           R+   A   P++           + G +   LE+LE+M+                     
Sbjct: 101 RSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANA 160

Query: 196 ----------RNL-CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
                     R++ C P+V  YTA+I   A  + L+  +++ EEM++     +++ Y  L
Sbjct: 161 GDLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVL 220

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           +  LCK   V    ++ ++M E G   +   +  L++G    G V  A  LL  +V  G 
Sbjct: 221 VDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGM 280

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           R ++  Y+++I GLC+ ++F +A ++ E      + PD  T + L+    +  +++   +
Sbjct: 281 RPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQ 340

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
           +L +M     +    +         K  +++ A    +E++ +  S  V  YN ++  L 
Sbjct: 341 MLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLC 400

Query: 424 EIGEVKKALYLFGKMR-GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
           ++G++ +A  +  +M+   ++  + +++S  I    +S  ++EA +  +++ +    P V
Sbjct: 401 KLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDV 460

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             Y  +  GLCK G ++ A  L++  +      P    Y   I  +C++ + ++   V+ 
Sbjct: 461 VTYTTIIDGLCKCGRLEEAEYLLQG-MKRAGCAPNVVTYTTLISGLCKARKVDEAERVME 519

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
           EM   GCPPN V  + +++G+C  G ++EA+++   +++ +     +   Y  I+   M 
Sbjct: 520 EMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALM- 578

Query: 603 KKTADLV 609
             ++DLV
Sbjct: 579 --SSDLV 583



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 180/410 (43%), Gaps = 26/410 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           +++G   N  +YN L   L + ++  AA                 ++++KM      P+V
Sbjct: 206 RERGCPPNLVTYNVLVDALCKLSMVGAAQ----------------DVVKKMIEGGFAPNV 249

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             + +++       N+D   ++   M    +  +V+ Y  LI GLCK  + +   E+  E
Sbjct: 250 MTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEE 309

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           MK  G+  D   Y  LI GL    K+ +A  +L+ +  SG   D+ +Y+SII   C+  +
Sbjct: 310 MKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGK 369

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
             +A K  +   +   +PD  T N ++    ++G++     +L QM++    V  D+  +
Sbjct: 370 LLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQE-SGDVLPDVVTY 428

Query: 384 FEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
              + G  K + ++ A  + + +   G +  V  Y  ++  L + G +++A YL   M+ 
Sbjct: 429 STVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKR 488

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
                N ++++  I    ++  + EA     ++      P++  YN +  GLC  G I  
Sbjct: 489 AGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKE 548

Query: 501 AMMLV-RDCLGNVASGPTEFKYALTILHVCRSG----EAEKIIEVLNEMT 545
           A  LV R   G     P    Y  TI++   S     EAE+++E +   T
Sbjct: 549 AQQLVQRMKDGRAECSPDAATYR-TIVNALMSSDLVQEAEQLLEQMKSTT 597


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 202/419 (48%), Gaps = 6/419 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ + + + ++M      PDV  Y A+I  L  +R +     ++EE +       V+ Y 
Sbjct: 10  KVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYN 69

Query: 243 TLIMGLCKGGRVVRGHELFREMKEN-GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
           T+I GLCK GR+     L+ +M  + G       Y  LI+GL  + +V K C LL+++  
Sbjct: 70  TMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAG 129

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   +   YN+++  L    +  +A+ L E    +   P+  T   ++    + G ++ 
Sbjct: 130 RGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEA 189

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
            F+++ +M  ++  ++ D+  F   L G  KE+RI+ A +VF+    +G   +V  Y+ L
Sbjct: 190 AFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTL 249

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L ++ ++ +AL L  KM  L    N++++S  +   ++ G + +A     ++ +   
Sbjct: 250 IDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGC 309

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           +P    YN L  G  K   +  A+ L+R+ L      P+   Y      +CRSG  ++ +
Sbjct: 310 LPDAVTYNTLIDGFFKRQRLREAVGLLREML-EAGFHPSVVTYTTLCHGLCRSGRFDEAV 368

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           E+L+ M   GC PN +  S+I+ G+CK G + EA   F  +  R  +   + I Y  ++
Sbjct: 369 EILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKM-ARDEVVAPHVIAYSALI 426



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 190/400 (47%), Gaps = 5/400 (1%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM--KKDLVEAD 237
            QGR  E   +LE+M  N C P++  +  +I+ L  E  ++A  RV +EM   +  +  D
Sbjct: 148 GQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPD 207

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ + +++ GLCK  R++  H +F+   E G   +   Y  LI+GL    K+ +A  LL 
Sbjct: 208 VITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLA 267

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            +V+ G RA+   Y++++ GL +V + + A  +          PD  T N L+    +  
Sbjct: 268 KMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQ 327

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YN 416
           R+     LL +M +  F  +          + +  R   A+++ + +  +G +   I Y+
Sbjct: 328 RLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYS 387

Query: 417 ILMGALLEIGEVKKALYLFGKM-RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
            ++  L + G V +AL  F KM R   +  + +++S  I    ++G I EA E   ++I 
Sbjct: 388 SIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIR 447

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
             ++P V  ++ L  GLC  G ID  + L R  +      P    YA  +  +CR+   +
Sbjct: 448 AGRIPDVVTFSILINGLCDAGRIDTGLELFRG-MAERGCVPDMVTYATLVDRLCRASRVD 506

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           +  ++  +M  +G  P+      +I G+ +    E+A+++
Sbjct: 507 EAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRI 546



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 190/407 (46%), Gaps = 8/407 (1%)

Query: 182 GRIAEMLEILEKMRRNLC-KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           GRI   L + + M  +   +P V  Y+ +I  L  +  +D   ++ EEM       + + 
Sbjct: 79  GRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVT 138

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL- 299
           Y TL+  L   GR      L  +M  NG   +   +G++I+GL  EG++  A  ++ ++ 
Sbjct: 139 YNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMF 198

Query: 300 -VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
            ++SG   D+  +NS++ GLC+ ++   A+ +F+  ++    P+  T + L+   ++M +
Sbjct: 199 MIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAK 258

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIY 415
           MD   +LLA+M  ++    A+   +   + G  K  R+  A+ V  +++  G       Y
Sbjct: 259 MDEALQLLAKM--VELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTY 316

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+    +   +++A+ L  +M       + ++++        SG   EA E  + +  
Sbjct: 317 NTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAA 376

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P+   Y+ +  GLCK G +  A+        +    P    Y+  I  +C++G+ +
Sbjct: 377 RGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKID 436

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           +  E L  M + G  P+ V  S +I+G+C  G ++   ++F  + ER
Sbjct: 437 EAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAER 483



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 20/206 (9%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
           + G+  +  +Y  L + L R+  F  A ++ + M ++G                   R+ 
Sbjct: 341 EAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVT 400

Query: 186 EMLEILEKMRRN-LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           E L   EKM R+ +  P V AY+A+I  L     +D      E M +     DV+ +  L
Sbjct: 401 EALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSIL 460

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLC  GR+  G ELFR M E G + D   Y  L++ L    +V +A DL + +   G 
Sbjct: 461 INGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGL 520

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKL 330
             D     ++I GL  V + + A ++
Sbjct: 521 SPDRSTRRTMIHGLLEVNRDEDAKRI 546



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 36/184 (19%)

Query: 390 KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           K  ++  A+ +F+++  K  Y  V  Y  L+  L +   VK+A  LF + R         
Sbjct: 7   KSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEAR--------- 57

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
               A  CH                      P+V  YN +  GLCK G I+ A+ L  D 
Sbjct: 58  ----AKGCH----------------------PTVVTYNTMIDGLCKCGRIENALTLYDDM 91

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
             +    PT   Y+  I  +CR  E +K  ++L EM   GC PN V  + +++ +   G 
Sbjct: 92  AIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGR 151

Query: 569 LEEA 572
            +EA
Sbjct: 152 SKEA 155


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 195/397 (49%), Gaps = 16/397 (4%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
             +L K+ +   +PD   +T +IR L  E  +   L ++++M  +  + +V+ Y TLI G
Sbjct: 122 FSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLING 181

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK G       L R M++     D  +Y  +I+ L  + +V +A +L   +V  G   D
Sbjct: 182 LCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPD 241

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD---FSTVNPLLVCCAEMGRMDNFFK 364
           +  Y S+I  LC + ++     L    +   + PD   FSTV   L  C E G++     
Sbjct: 242 IFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDAL--CKE-GKITEAHD 298

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
           ++  M  +   V  ++  +   + G   +  +  A+ VF+ +   GY+ +V  YN L+  
Sbjct: 299 VVDMM--IIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLING 356

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQV 479
             +I  + KA YLF +M    L  N+++++  +   CHV  G + +A    ++++   Q+
Sbjct: 357 YCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHV--GRLQDAIALFHEMVAHGQI 414

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P +A Y  L   LCK   +D AM L++   G+    P    Y + I  +CR+GE E   +
Sbjct: 415 PDLATYRILLDYLCKKSHLDEAMALLKTIEGS-NMDPDIQIYTIVIDGMCRAGELEAARD 473

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           + + ++ +G  PN    + +I+G+C+ G L+EA K+F
Sbjct: 474 IFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLF 510



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 119/268 (44%), Gaps = 20/268 (7%)

Query: 146 KGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           +G + N  +YNAL   +CL                  Q  + E +++ + M  N   P+V
Sbjct: 306 RGVEPNVVTYNALMDGHCL------------------QSEMDEAVKVFDTMVHNGYAPNV 347

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            +Y  +I      + +D    ++EEM +  +  + + Y TL+ GLC  GR+     LF E
Sbjct: 348 ISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHE 407

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M  +G + D A Y +L++ L  +  + +A  LLK +  S    D+ IY  +I G+CR  +
Sbjct: 408 MVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGE 467

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            + A  +F       L P+  T   ++      G +D   KL  +M+    S        
Sbjct: 468 LEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNT 527

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSS 411
               + + +  + A+ + +E+  +G+S+
Sbjct: 528 ITQGLLQNKEALRAIQLLQEMLARGFSA 555



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 130/281 (46%), Gaps = 7/281 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+I E  ++++ M     +P+V  Y A++     +  +D  ++V++ M  +    +V++
Sbjct: 290 EGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVIS 349

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI G CK  R+ +   LF EM +  ++ +   Y  L+ GL   G++  A  L  ++V
Sbjct: 350 YNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMV 409

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   DL  Y  ++  LC+    D+A  L +     ++ PD      ++      G ++
Sbjct: 410 AHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELE 469

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYNI 417
               + + +      +  ++  +   + G   R ++  A  +F E+ G G S     YN 
Sbjct: 470 AARDIFSNLSSK--GLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNT 527

Query: 418 LMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQC 456
           +   LL+  E  +A+ L  +M  RG + +V++ +  + + C
Sbjct: 528 ITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLC 568



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 20/204 (9%)

Query: 145 QKGYKHNFASYNALAYCLSRNN-------LFR---AADQVPEL---------MDSQGRIA 185
           QK    N  +YN L + L           LF    A  Q+P+L         +  +  + 
Sbjct: 375 QKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLD 434

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E + +L+ +  +   PD+  YT +I  +     L+A   ++  +    +  +V  Y  +I
Sbjct: 435 EAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMI 494

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLC+ G +   ++LF EM  NG   D   Y  + +GL+   +  +A  LL++++  G+ 
Sbjct: 495 NGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFS 554

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYK 329
           AD+     ++  LC  K  D++ K
Sbjct: 555 ADVSTTTLLVEMLCDDK-LDQSVK 577



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 42/218 (19%), Positives = 83/218 (38%), Gaps = 9/218 (4%)

Query: 409 YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           Y S   +N      L    +  AL  F +M  ++   +++ F+  +    ++        
Sbjct: 29  YFSSLSHNRFHSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFS 88

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
             N++      P V   N L    C +     A  ++   L  +   P    +   I  +
Sbjct: 89  LSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKIL-KLGLQPDTATFTTLIRGL 147

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C  G+    + + ++M  EG  PN V    +I+G+CK G    A ++  ++ +     + 
Sbjct: 148 CVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGN--CQP 205

Query: 589 NTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKG 626
           + +VY  I+    K +         + F L SK+  +G
Sbjct: 206 DVVVYTSIIDSLCKDRQVT------EAFNLFSKMVGQG 237


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 123/443 (27%), Positives = 199/443 (44%), Gaps = 27/443 (6%)

Query: 143 GKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCK 200
            +  G+     SYNA+  A   S+ N+  A +   E++ SQ                   
Sbjct: 160 SQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQ-----------------VS 202

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+VF Y  +IR      NLD  LR ++ M+K     +V+ Y TLI G CK  ++  G EL
Sbjct: 203 PNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFEL 262

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
            R M   G+  +   Y V+I GL  EG++ +   +L ++   GY  D   YN++I G C+
Sbjct: 263 LRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCK 322

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
              F +A  +    ++  L+P   T   L+    + G M+   + L QM   +       
Sbjct: 323 EGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQM---RVRGLCPN 379

Query: 381 EKFFEFLV-GKEERIMM--ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
           E+ +  LV G  ++  M  A  V +E+   G+S SV  YN L+      G++  A+ +  
Sbjct: 380 ERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLE 439

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            M+   L  + +S+S  +     S D+ EA     K++     P    Y+ L +G C+  
Sbjct: 440 DMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQR 499

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
               A  L  + L  V   P EF Y   I   C  G+ +K I++ NEM ++G  P+ V  
Sbjct: 500 RTKEACDLFDEML-RVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTY 558

Query: 557 SAIISGMCKHGTLEEARKVFTNL 579
           S +I+G+ K     EA+++   L
Sbjct: 559 SVLINGLNKQARTREAKRLLLKL 581



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 115/490 (23%), Positives = 204/490 (41%), Gaps = 47/490 (9%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           KG + N  SYN +   L R                +GR+ E+  +L +M +     D   
Sbjct: 269 KGLEPNLISYNVVINGLCR----------------EGRMKEISFVLTEMNKRGYSLDEVT 312

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  +I+    E N    L +  EM +  +   V+ Y +LI  +CK G + R  E   +M+
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMR 372

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
             G+  +   Y  L++G   +G + +A  +LK+++D+G+   +  YN++I G C   +  
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMV 432

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
            A  + E   +  L PD  + + +L        +D   ++  +M  +   +  D   +  
Sbjct: 433 DAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKM--VAKGIKPDTITYSS 490

Query: 386 FLVG--KEERIMMALDVFEELKGKGYSSVP----IYNILMGALLEIGEVKKALYLFGKMR 439
            + G  ++ R   A D+F+E+   G   +P     Y  L+ A    G+++KA+ L  +M 
Sbjct: 491 LIQGFCEQRRTKEACDLFDEMLRVG---LPPDEFTYTALINAYCMEGDLQKAIQLHNEMV 547

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY-----NC------- 487
              +  + +++S+ I    +     EA     K+     VPS   Y     NC       
Sbjct: 548 EKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKS 607

Query: 488 ---LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
              L KG C  G +  A  +    L      P    Y + I   CR G+  K   +  EM
Sbjct: 608 VVSLIKGFCMKGMMTEADQVFESMLEK-NHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEM 666

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE-HMKK 603
            + G   + V   A++  + K G + E   V  N+     L+EA      ++L+E + ++
Sbjct: 667 VKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRSCELSEAEQA---KVLVEINHRE 723

Query: 604 KTADLVLSGL 613
              D+VL  L
Sbjct: 724 GNMDVVLDVL 733



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 88/409 (21%), Positives = 163/409 (39%), Gaps = 77/409 (18%)

Query: 147 GYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           G+  +  +YNAL   +C++                  G++ + + +LE M+     PDV 
Sbjct: 410 GFSPSVVTYNALINGHCIA------------------GKMVDAIAVLEDMKEKGLTPDVV 451

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
           +Y+ ++       ++D  LRV  +M    ++ D + Y +LI G C+  R     +LF EM
Sbjct: 452 SYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEM 511

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              G+  D   Y  LI     EG + KA  L  ++V+ G   D+  Y+ +I GL +  + 
Sbjct: 512 LRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQART 571

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +A +L      ++  P   T + L+  C+                 ++F     L K F
Sbjct: 572 REAKRLLLKLFYEESVPSDVTYHTLIENCS----------------NIEFKSVVSLIKGF 615

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                                            + G + E  +V      F  M   N +
Sbjct: 616 --------------------------------CMKGMMTEADQV------FESMLEKNHK 637

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            +  ++++ I  H   GDI +A   + ++++   +        L K L K G+++    +
Sbjct: 638 PDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSV 697

Query: 505 VRDCLGNVA-SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           + + L +   S   + K  + I H  R G  + +++VL EM ++G  PN
Sbjct: 698 IANVLRSCELSEAEQAKVLVEINH--REGNMDVVLDVLAEMAKDGFLPN 744


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 122/472 (25%), Positives = 192/472 (40%), Gaps = 63/472 (13%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS----------------------QG 182
           + G   N  +YN L   L RN L    D+  EL+D                        G
Sbjct: 105 ENGCMPNLVTYNTLLSGLCRNGLM---DEAYELLDEMRERGLQPDKFSYDTLMAGLCKTG 161

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           +I   L++ E      C PDV AY+ +I  L     LD   +++E+M+++  E DV+ + 
Sbjct: 162 KIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFT 221

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            L+ GLCKG R+    ++   M++     +   Y  LI+GL   G+V  A ++ K ++  
Sbjct: 222 ALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVR 281

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   ++  YNS+I G C     D A  L E        PD  T N L+    + GR    
Sbjct: 282 GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEA 341

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422
            +L   M K KF                                     V  Y+ L+G  
Sbjct: 342 NRLFGDM-KAKFC---------------------------------NPDVITYSCLIGGF 367

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            ++  +  A  LF  M    +  + ++FS  ++ +  +G + +A     +++     P V
Sbjct: 368 CKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDV 427

Query: 483 AAYNCLTKGLCKIGE-IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
             Y  L  G CK+G  ++A  +L R  +      P    Y   I   CR+G+     ++L
Sbjct: 428 YTYTSLVDGFCKVGRMVEARRVLKR--MAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLL 485

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
            EM   G  PN +   ++I G C  G LEEARK+   L ER    +A+   Y
Sbjct: 486 EEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERL-ERDENCKADMFAY 536



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 203/453 (44%), Gaps = 43/453 (9%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E      KM++    P+ + Y  +I        +     + +EMK+  +  +V+ Y 
Sbjct: 22  RLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYS 81

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           T+I G C+  +V   ++LFR+M ENG + +   Y  L+ GL   G + +A +LL ++ + 
Sbjct: 82  TVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRER 141

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + D   Y++++ GLC+  + D A K+FE     D  PD    + L+    + GR+D  
Sbjct: 142 GLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEA 201

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILM 419
            KL  +M   + S   D+  F   + G  K +R+  A  V E ++ +  + +V  Y+ L+
Sbjct: 202 CKLFEKMR--ENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLI 259

Query: 420 GALLEIGEVKKALYLFGKM--RGLNLEV---NSLSFSIAIQCHVESGDIL----EACECH 470
             L + G+V+ A  +F +M  RG+   V   NSL     +   V+S  +L     A  C 
Sbjct: 260 DGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCL 319

Query: 471 NKIIEMSQV--------------------------PSVAAYNCLTKGLCKIGEIDAAMML 504
             II  + +                          P V  Y+CL  G CK+  ID A  L
Sbjct: 320 PDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 379

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
             D L   A  P    ++  +   C +G  +    +L EM    C P+    ++++ G C
Sbjct: 380 FDDMLKQ-AVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFC 438

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           K G + EAR+V   + +R    + N + Y  ++
Sbjct: 439 KVGRMVEARRVLKRMAKRG--CQPNVVTYTALI 469



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 185/395 (46%), Gaps = 6/395 (1%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C+ +V  +T MI  L     L      + +MKK     +   Y  LI G CK  +V R +
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 62

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L +EMKE+G+  +   Y  +I G   + KV  A  L + +V++G   +L  YN+++ GL
Sbjct: 63  LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 122

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           CR    D+AY+L +   +  L PD  + + L+    + G++D   K+    +        
Sbjct: 123 CRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFE--DNSNGDCPP 180

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
           D+  +   + G  K  R+  A  +FE+++       V  +  LM  L +   +++A  + 
Sbjct: 181 DVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVL 240

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             M   N   N +++S  I    ++G + +A E   ++I     P+V  YN L  G C  
Sbjct: 241 ETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMT 300

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
             +D+A++L+ + +      P    Y   I  +C++G A +   +  +M  + C P+ + 
Sbjct: 301 NGVDSALLLMEE-MTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVIT 359

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            S +I G CK   ++ AR +F ++ ++ +L +  T
Sbjct: 360 YSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVT 394



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 101/459 (22%), Positives = 203/459 (44%), Gaps = 28/459 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K+ G   N  +Y+ + +   R                Q ++    ++  +M  N C P++
Sbjct: 69  KESGLAPNVVTYSTVIHGFCR----------------QTKVDTAYKLFRQMVENGCMPNL 112

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  ++  L     +D    + +EM++  ++ D  +Y TL+ GLCK G++    ++F +
Sbjct: 113 VTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFED 172

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
                   D   Y  LI GL   G++ +AC L + + ++    D+  + +++ GLC+  +
Sbjct: 173 NSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDR 232

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
             +A ++ E     +  P+  T + L+    + G++ +  ++  +M  +   +  ++  +
Sbjct: 233 LQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRM--IVRGIEPNVVTY 290

Query: 384 FEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
              + G      +  AL + EE+   G    +  YN L+  L + G   +A  LFG M+ 
Sbjct: 291 NSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKA 350

Query: 441 --LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
              N +V + S  I   C +E  D+  A    + +++ + +P V  ++ L +G C  G +
Sbjct: 351 KFCNPDVITYSCLIGGFCKLERIDM--ARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLV 408

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D A  L+ + + +  S P  + Y   +   C+ G   +   VL  M + GC PN V  +A
Sbjct: 409 DDAERLLEEMVASDCS-PDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTA 467

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +I   C+ G    A K+   +    +  + N I Y  ++
Sbjct: 468 LIDAFCRAGKPTVAYKLLEEMVGNGV--QPNVITYRSLI 504



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 97/439 (22%), Positives = 173/439 (39%), Gaps = 68/439 (15%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ------------- 181
           A K F    ++   + +  ++ AL   L + +  + A QV E M+ +             
Sbjct: 201 ACKLFEKM-RENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLI 259

Query: 182 ------GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
                 G++ +  E+ ++M     +P+V  Y ++I        +D+ L + EEM      
Sbjct: 260 DGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCL 319

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            D++ Y TLI GLCK GR    + LF +MK      D   Y  LI G     ++  A  L
Sbjct: 320 PDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 379

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
             D++      D+  +++++ G C     D A +L E  V  D +PD  T   L+    +
Sbjct: 380 FDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCK 439

Query: 356 MGRMDNFFKLLAQMEKLK-----FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS 410
           +GRM    ++L +M K        +  A ++ F      +  +  +A  + EE+ G G  
Sbjct: 440 VGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFC-----RAGKPTVAYKLLEEMVGNGVQ 494

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKM-RGLNLEVNSLSFSIAIQCHVESGDILEACE 468
            +V  Y  L+G     G++++A  +  ++ R  N + +  ++ + +     +G +  A E
Sbjct: 495 PNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALE 554

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-------------------------- 502
               I +    P    Y  L +GLC+  E+  AM                          
Sbjct: 555 LLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQEL 614

Query: 503 ----------MLVRDCLGN 511
                      L  + LGN
Sbjct: 615 AREGRHEEANALADELLGN 633



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 85/170 (50%), Gaps = 3/170 (1%)

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
           +  E N ++++I I    ++  + EA     K+ +   VP+   YN L  G CK+ ++  
Sbjct: 1   MECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHR 60

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A +L+++ +      P    Y+  I   CR  + +   ++  +M + GC PN V  + ++
Sbjct: 61  AYLLLKE-MKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLL 119

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVL 610
           SG+C++G ++EA ++   +RER L  + +   YD ++    K    D+ L
Sbjct: 120 SGLCRNGLMDEAYELLDEMRERGL--QPDKFSYDTLMAGLCKTGKIDMAL 167


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 196/397 (49%), Gaps = 9/397 (2%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C+P+  +YT ++R L A+R  D  + +   M+   V ADV+ Y TLI GLC    V +  
Sbjct: 111 CRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAV 170

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           EL  EM E+GI  +  +Y  L++G    G+      +  ++ + G   D+ +Y  +I  L
Sbjct: 171 ELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSL 230

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C+V +  KA+ + ++ V+  L P+  T N L+ C  + G +     +L +M   +  VA 
Sbjct: 231 CKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMS--EKGVAP 288

Query: 379 DLEKFFEFLVGKEERIMM--ALDVFEEL-KGKGY--SSVPIYNILMGALLEIGEVKKALY 433
           D+  +   + G  + + M  A+ + EE+ +GK     +V  +N ++  L +IG +++A  
Sbjct: 289 DVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQ 348

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           +   M      VN +++++ I   +    + +A E  +++  +   P    Y+ L KG C
Sbjct: 349 VRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFC 408

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           K+ ++D A  L+   + +    P  F Y   ++ +C  G  E+   + NEM     P + 
Sbjct: 409 KMWQVDRAEDLL-STMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM-DNNFPLDV 466

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           V  S +I G CK G L+ A+++  ++ +  L  +A T
Sbjct: 467 VAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVT 503



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 163/367 (44%), Gaps = 53/367 (14%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G + N  +YN L  C+ +                +G + E + +L+KM      PDV 
Sbjct: 248 RRGLEPNVVTYNVLINCMCK----------------EGSVKEAIGVLKKMSEKGVAPDVV 291

Query: 205 AYTAMIRVLAAERNLDACLRVWEEM--KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
            Y  +I+ L+    +D  + + EEM   K++V+ +V+ + ++I GLC  GR+ +  ++  
Sbjct: 292 TYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRA 351

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            M+E G +++   Y +LI GL+   KV KA +L+ ++   G   D   Y+ +I G C++ 
Sbjct: 352 MMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMW 411

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           Q D+A  L        + P+     PLLV   E G M+                      
Sbjct: 412 QVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMER--------------------- 450

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                         A ++F E+       V  Y+ ++    + G++K A  L   +    
Sbjct: 451 --------------ARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEG 496

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           L  +++++SI I    +SGD+  A     ++     +P VA ++ L +G    GEI+  +
Sbjct: 497 LTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVL 556

Query: 503 MLVRDCL 509
            L+R+ +
Sbjct: 557 ELIREMI 563



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 133/351 (37%), Gaps = 79/351 (22%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEV----------------TV------QDDLA-------- 340
           YN+++  LCR    D+A  L                   TV       D LA        
Sbjct: 80  YNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLR 139

Query: 341 --------PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--K 390
                    D  T   L+    +   +D   +L+ +M   +  +  ++  +   L G  K
Sbjct: 140 SMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEM--CESGIEPNVVVYSSLLQGYCK 197

Query: 391 EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
             R      VF E+  KG    V +Y  L+ +L ++G+ KKA  +   M    LE N ++
Sbjct: 198 SGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVT 257

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-- 507
           +++ I C  + G + EA     K+ E    P V  YN L KGL  + E+D AM L+ +  
Sbjct: 258 YNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMV 317

Query: 508 -----------CLGNVASGPTEF-----------------------KYALTILHVCRSGE 533
                         +V  G  +                         Y L I  + R  +
Sbjct: 318 RGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHK 377

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
             K +E+++EMT  G  P+    S +I G CK   ++ A  + + +R+R +
Sbjct: 378 VRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGI 428



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 104/234 (44%), Gaps = 23/234 (9%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           ++ G   N  +YN L   L R +  R A ++ + M S G                   ++
Sbjct: 354 EETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQV 413

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
               ++L  MR    +P++F Y  ++  +  +  ++    ++ EM  +    DV+AY T+
Sbjct: 414 DRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNF-PLDVVAYSTM 472

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK G +    EL + + + G+  D   Y ++I      G +  A  +LK +  SG+
Sbjct: 473 IHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGF 532

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD---FSTVNPLLVCCAE 355
             D+ +++S+I G     + +K  +L    +  ++A D    ST++  LV   E
Sbjct: 533 LPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVASNE 586



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 45/187 (24%)

Query: 476 MSQVPSV---AAYNCLTKGLCKIGEIDAAMMLVR-------------------------- 506
           +  +PSV    +YN +   LC+ G  D A  L+R                          
Sbjct: 68  LDALPSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCA 127

Query: 507 DCLGNVASG-----------PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           D L + A G                Y   I  +C + E +K +E++ EM + G  PN V+
Sbjct: 128 DRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVV 187

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI---LIEHMKKKTADLVLSG 612
            S+++ G CK G  E+  KVF  + E+ +  E + ++Y  +   L +  K K A  V+  
Sbjct: 188 YSSLLQGYCKSGRWEDVGKVFVEMSEKGI--EPDVVMYTGLIDSLCKVGKAKKAHGVMDM 245

Query: 613 LKFFGLE 619
           +   GLE
Sbjct: 246 MVRRGLE 252



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           E+L+ +      PD   Y+ +I + A   +++A   V ++M       DV  + +LI G 
Sbjct: 487 ELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGY 546

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
              G + +  EL REM    I +D  I   L   LV   + GKA  LL+ L D       
Sbjct: 547 STKGEINKVLELIREMITKNIALDSKIISTLSTSLVASNE-GKA--LLQSLPDFSAEISK 603

Query: 309 GIYNS 313
           G  NS
Sbjct: 604 GNINS 608


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 200/459 (43%), Gaps = 45/459 (9%)

Query: 196 RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVV 255
           RN+  PD ++Y  +I  LA    L+    +++++    V    +AY +LI GLC      
Sbjct: 4   RNV-SPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFD 62

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
              ELF +M   G       Y V+I+     G + +ACDL+K +++ G+  D+  YN+++
Sbjct: 63  DARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVM 122

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            GLC+  + ++A  LF    +    P+  + N +++   +  ++D   ++  +ME     
Sbjct: 123 DGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAR--D 180

Query: 376 VAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
           +  D   +   + G  K  ++  A  +F  +   G + S   YN+++  +     + +AL
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            LF  MR      +  +F+I I  H + G + EA     ++ +   VP V  Y+ L  GL
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300

Query: 493 CKIGEIDAAMMLVRDCL--------------------------------GNVASG--PTE 518
           C I  +D A  L+ D +                                  V+SG  P  
Sbjct: 301 CSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDV 360

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
             Y   +   CR+G+ E+  E+L++M   G  PN V  +A++SG+CK   L EA  VF  
Sbjct: 361 VTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQ 420

Query: 579 LRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFG 617
           ++        N   Y  +++        D    GLK FG
Sbjct: 421 MKSSG--CAPNLFTYTALILGFCSAGQVD---GGLKLFG 454



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/491 (23%), Positives = 215/491 (43%), Gaps = 31/491 (6%)

Query: 120 DLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD 179
           D +A+  K+ +   L  K  H      G   +  +Y +L + L   N F  A ++   M+
Sbjct: 18  DGLAKAGKLNDARDLFQKLLH-----SGVTPSTVAYTSLIHGLCMANSFDDARELFADMN 72

Query: 180 -------------------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLD 220
                               +G + E  ++++KM  +   PDV  Y  ++  L     ++
Sbjct: 73  RRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVE 132

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280
             L ++ EM++     +  ++ T+I+GLC+  ++ +  ++F EM+   I  D   YG+LI
Sbjct: 133 EALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILI 192

Query: 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
           +GL   GK+ +A  L + ++DSG       YN +I G+C     D+A +LF+        
Sbjct: 193 DGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCR 252

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMAL 398
           P   T N L+    + G+MD  F+LL +M         D+  +   + G     R+  A 
Sbjct: 253 PSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGH--VPDVVTYSTLISGLCSIARVDDAR 310

Query: 399 DVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
            + E++ K +   +V   N L+  L + G +K+A  +   M       + ++++  +  H
Sbjct: 311 HLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGH 370

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
             +G    A E  + ++     P+V  Y  L  GLCK   +  A  +    + +    P 
Sbjct: 371 CRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQ-MKSSGCAPN 429

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
            F Y   IL  C +G+ +  +++  EM   G  P+ V+   + + +CK G    A ++  
Sbjct: 430 LFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILR 489

Query: 578 NLRERKLLTEA 588
             RE  L +EA
Sbjct: 490 EGRE-SLRSEA 499



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 104/441 (23%), Positives = 184/441 (41%), Gaps = 43/441 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GR+ E L +  +M R  C P+  ++  +I  L  +  +D   +V+ EM+   +  D  +
Sbjct: 128 SGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWS 187

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI GL K G++   ++LFR M ++GI      Y V+I G+     + +A +L K + 
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMR 247

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G R     +N +I   C+  + D+A++L +    D   PD  T + L+     + R+D
Sbjct: 248 SKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVD 307

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
           +   LL  M K +       +      + K  RI  A +V + +   G S  V  YN L+
Sbjct: 308 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
                 G+ ++A  L   M    L  N ++++  +    ++  + EAC    ++      
Sbjct: 368 HGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCA 427

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYALTILHVCRSGEAEKI 537
           P++  Y  L  G C  G++D  + L  +  C G     P    Y      +C+SG + + 
Sbjct: 428 PNLFTYTALILGFCSAGQVDGGLKLFGEMVCAG---ISPDHVVYGTLAAELCKSGRSARA 484

Query: 538 IEVLNE-------------------------------------MTQEGCPPNEVICSAII 560
           +E+L E                                     M + G  P    C++++
Sbjct: 485 LEILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLV 544

Query: 561 SGMCKHGTLEEARKVFTNLRE 581
           +G+CK G   EAR V   + +
Sbjct: 545 AGLCKSGQGGEARAVLEEIMD 565



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 145/342 (42%), Gaps = 7/342 (2%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E LE+ + MR   C+P  F +  +I        +D   R+ + M  D    DV+ Y TLI
Sbjct: 238 EALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLI 297

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLC   RV     L  +M +            LI GL   G++ +A ++L  +V SG  
Sbjct: 298 SGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQS 357

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  YN+++ G CR  Q ++A +L    V   LAP+  T   L+    +  R+     +
Sbjct: 358 PDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGV 417

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGAL 422
            AQM+      A +L  +   ++G     ++   L +F E+   G S    +Y  L   L
Sbjct: 418 FAQMKS--SGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAEL 475

Query: 423 LEIGEVKKALYLFGKMR-GLNLEV-NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            + G   +AL +  + R  L  E      +  A+   +++G +  A      ++   Q+P
Sbjct: 476 CKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLP 535

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
           +      L  GLCK G+   A  ++ + +     G    K A
Sbjct: 536 APERCASLVAGLCKSGQGGEARAVLEEIMDLAYGGKARGKAA 577



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           +G   N  +Y AL   L + N                R+ E   +  +M+ + C P++F 
Sbjct: 389 RGLAPNVVTYTALVSGLCKAN----------------RLPEACGVFAQMKSSGCAPNLFT 432

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           YTA+I    +   +D  L+++ EM    +  D + Y TL   LCK GR  R  E+ RE +
Sbjct: 433 YTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGR 492

Query: 266 ENGILIDRA----IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           E+  L   A    +Y   ++GL+  GK+  A   ++D+V  G         S++ GLC+ 
Sbjct: 493 ES--LRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKS 550

Query: 322 KQFDKAYKLFE 332
            Q  +A  + E
Sbjct: 551 GQGGEARAVLE 561


>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
 gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 136/521 (26%), Positives = 229/521 (43%), Gaps = 62/521 (11%)

Query: 114 LRRVTPDLVAEVLK---VENNPTLASKFFHWAGKQKGYKHNFASY----NALA------- 159
           L +++P+ V+ VLK   ++  P LA KFF WAGKQK Y HN   Y    + LA       
Sbjct: 56  LIKLSPNFVSFVLKSMELQKRPDLALKFFTWAGKQKKYTHNLQCYVSSIDVLAINGDLDN 115

Query: 160 ----YCLSRNNLF----RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIR 211
               +C  R   F     AA+ + +   S G + E+L +   M+ N  +P +F Y  ++ 
Sbjct: 116 VKSVFCKFRGMGFLMNVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLN 175

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR--------- 262
            L     +++  RV E M+   +  DV+ Y T+I G C+ G+  +  E FR         
Sbjct: 176 GLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAP 235

Query: 263 --------------------------EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
                                     EM ENG+ I    Y ++I GL  EGK  +   + 
Sbjct: 236 DKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVF 295

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
           + ++  G + ++ IY ++I    +     +A  LFE   ++ L PD  T   ++ C  + 
Sbjct: 296 EKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKS 355

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIY 415
           GR+D   + L        +V A L       +GK  R+  A  +FEE+  KG       Y
Sbjct: 356 GRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCY 415

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+ AL + G+  +AL  F +M     +    +++I I          EA +  + +I+
Sbjct: 416 NALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMID 475

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP-TEFKYALTILHVCRSGEA 534
               P+ AA+  L+ GLC  G++  A  L+ D L  +   P T F+  L +L  C++G  
Sbjct: 476 KGITPTAAAFRALSIGLCLSGKVARACKLL-DELAPMGVIPETAFEDMLNVL--CKAGRI 532

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           ++  ++ +     G      + + +I+ + K G  + A K+
Sbjct: 533 KEACKLADGFVDRGREIPGRVRTVLINALRKAGNADLALKL 573


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 178/391 (45%), Gaps = 35/391 (8%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++ E+MRR  C  +   Y  MI  L     ++      EEM    +  D   Y  L+ GL
Sbjct: 264 KVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGL 323

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           CKG R+     L  EM  +G+  +  +YG L++G + EGK  +A D+LK+++ +G + + 
Sbjct: 324 CKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNK 383

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
            +Y+++I GLC++ Q  +A KL +  ++  L PD  T NPL+    +    D  F+LL +
Sbjct: 384 IMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNE 443

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEV 428
           M                    +   I+               +V  Y I++  L + GE 
Sbjct: 444 M--------------------RNSGIL--------------PNVYSYGIMINGLCQNGES 469

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
           K+A  L  +M    L+ N+  ++  I  H + G+I  ACE   K+ + +  P +  YN L
Sbjct: 470 KEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSL 529

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
            KGL  +G ++ A       +      P EF Y+  I   C++G  EK  ++L +M   G
Sbjct: 530 IKGLSTVGRMEEAEEYYAQ-VQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSG 588

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             PN    + ++ G  K    E+   +  ++
Sbjct: 589 LKPNADTYTDLLEGYFKSNDYEKVSSILQSM 619



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/446 (24%), Positives = 196/446 (43%), Gaps = 38/446 (8%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++    ++L++M +   +PD F Y  +++    + + D    +  EM+   +  +V +Y
Sbjct: 397 GQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSY 456

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I GLC+ G       L  EM   G+  +  +Y  LI G   EG +  AC+ L+ +  
Sbjct: 457 GIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTK 516

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +    DL  YNS+I GL  V + ++A + +    +  L PD  T + L+    + G ++ 
Sbjct: 517 ANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEK 576

Query: 362 FFKLLAQMEKLKFSVAAD-----LEKFF------------EFLVG--------------- 389
             +LL QM        AD     LE +F            + ++G               
Sbjct: 577 ADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIR 636

Query: 390 ---KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
              + E + +A  V  E++  G    + IY+ L+  L +I +++KA+ L  +M    LE 
Sbjct: 637 NLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEP 696

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
             + ++  I     SGDI  A    + I+    VP+   Y  L  G CK G+I  A  L 
Sbjct: 697 GIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLY 756

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
           ++ L +    P  F Y +       + + E+ + +  EM   G   N  + + ++ G CK
Sbjct: 757 KEML-DRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-NVSLFNTLVHGFCK 814

Query: 566 HGTLEEARKVFTNLRERKLLTEANTI 591
            G L+E  K+   + +R+++  A T+
Sbjct: 815 RGKLQETEKLLHVMMDREIVPNAQTV 840



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 185/407 (45%), Gaps = 9/407 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G   E   +LE+M     KP+ F Y  +I   + E N+       E+M K  V  D+  
Sbjct: 466 NGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFC 525

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI GL   GR+    E + ++++ G++ D   Y  LI G    G + KA  LL+ ++
Sbjct: 526 YNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQML 585

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +SG + +   Y  ++ G  +   ++K   + +  +     PD      ++   +    M+
Sbjct: 586 NSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENME 645

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
             F +L ++EK    +  DL  +   + G  K   +  A+ + +E+  +G    +  YN 
Sbjct: 646 VAFMVLTEVEK--NGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNA 703

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+      G++ +A  +F  +    L  N ++++  I  + ++GDI +A + + ++++  
Sbjct: 704 LIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRG 763

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH-VCRSGEAEK 536
             P    YN L  G     +++ A+ L  +      +  + F    T++H  C+ G+ ++
Sbjct: 764 IAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYANVSLFN---TLVHGFCKRGKLQE 820

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
             ++L+ M      PN      ++S   K G L EA +VF  L+++K
Sbjct: 821 TEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQKK 867



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/420 (22%), Positives = 193/420 (45%), Gaps = 8/420 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G + E     E+M      PD F Y A++  L     L     + +EM    ++ +++ 
Sbjct: 291 SGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVV 350

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TL+ G  K G+     ++ +EM   G+  ++ +Y  LI GL   G++G+A  LLK+++
Sbjct: 351 YGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMI 410

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G R D   YN ++ G  +    D A++L        + P+  +   ++    + G   
Sbjct: 411 KVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESK 470

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYNI 417
               LL +M  +   +  +   +   ++G  KE  I +A +  E++ K   +  +  YN 
Sbjct: 471 EAGNLLEEM--ISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNS 528

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L  +G +++A   + +++   L  +  ++S  I  + ++G++ +A +   +++   
Sbjct: 529 LIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSG 588

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P+   Y  L +G  K  + +    +++  LG+    P    Y + I ++ RS   E  
Sbjct: 589 LKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGS-GDKPDNHIYGIVIRNLSRSENMEVA 647

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             VL E+ + G  P+  I S++ISG+CK   +E+A  +   + +  L  E   + Y+ ++
Sbjct: 648 FMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGL--EPGIVCYNALI 705



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 164/405 (40%), Gaps = 57/405 (14%)

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVM--------------------AYVTLIM 246
            A + ++ A+  L    R    + KDL+ AD M                     Y T I 
Sbjct: 192 AAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIE 251

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
             CK        ++F EM+     ++   Y V+I GL   G V +A    +++VD G   
Sbjct: 252 AHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSP 311

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D   Y +++ GLC+  +  +A  L +      L P+      L+         D F    
Sbjct: 312 DAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLV---------DGFM--- 359

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEI 425
                                  KE +   A D+ +E+   G     I Y+ L+  L +I
Sbjct: 360 -----------------------KEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKI 396

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G++ +A  L  +M  + L  ++ +++  +Q H +  D   A E  N++     +P+V +Y
Sbjct: 397 GQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSY 456

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
             +  GLC+ GE   A  L+ + +      P  F YA  I+   + G      E L +MT
Sbjct: 457 GIMINGLCQNGESKEAGNLLEEMISE-GLKPNAFMYAPLIIGHSKEGNISLACEALEKMT 515

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +    P+    +++I G+   G +EEA + +  +++R L+ +  T
Sbjct: 516 KANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFT 560



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 139/342 (40%), Gaps = 4/342 (1%)

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
           A+  VL++     G V  A  ++  + D G        N ++  L R    +  +KL   
Sbjct: 174 AVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGF 233

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER 393
                + PD  T +  +    +    D   K+  +M +   ++           + +   
Sbjct: 234 MEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGA 293

Query: 394 IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           +  A    EE+   G S     Y  LM  L +   +K+A  L  +M    L+ N + +  
Sbjct: 294 VEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGT 353

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
            +   ++ G   EA +   ++I     P+   Y+ L +GLCKIG++  A  L+++ +  V
Sbjct: 354 LVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMI-KV 412

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              P  F Y   +    +  + +   E+LNEM   G  PN      +I+G+C++G  +EA
Sbjct: 413 GLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEA 472

Query: 573 RKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK 614
             +   +    L  + N  +Y  ++I H K+    L    L+
Sbjct: 473 GNLLEEMISEGL--KPNAFMYAPLIIGHSKEGNISLACEALE 512


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 203/451 (45%), Gaps = 28/451 (6%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
           A    H A +  G+     SYNA+  A   S+ N+  A +   E+++SQ           
Sbjct: 153 ALSIVHLA-QAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQ----------- 200

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
                   P+VF Y  +IR      N+D  L ++++M+      +V+ Y TLI G CK  
Sbjct: 201 ------VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLR 254

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
           ++  G +L R M   G+  +   Y V+I GL  EG++ +   +L ++   GY  D   YN
Sbjct: 255 KIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYN 314

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
           ++I G C+   F +A  +    ++  L P   T   L+    + G M+   + L QM   
Sbjct: 315 TLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQM--- 371

Query: 373 KFSVAADLEKFFEFLV-GKEERIMM--ALDVFEELKGKGYS-SVPIYNILMGALLEIGEV 428
           +       E+ +  LV G  ++  M  A  V  E+   G+S SV  YN L+      G++
Sbjct: 372 RVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKM 431

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
           + A+ +   M+   L  + +S+S  +     S D+ EA     +++E    P    Y+ L
Sbjct: 432 EDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSL 491

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
            +G C+      A  L  + L  V   P EF Y   I   C  G+ EK +++ NEM ++G
Sbjct: 492 IQGFCEQRRTKEACDLYEEML-RVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKG 550

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             P+ V  S +I+G+ K     EA+++   L
Sbjct: 551 VLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 116/490 (23%), Positives = 208/490 (42%), Gaps = 47/490 (9%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           KG + N  SYN +   L R                +GR+ E+  +L +M R     D   
Sbjct: 269 KGLEPNLISYNVVINGLCR----------------EGRMKEVSFVLTEMNRRGYSLDEVT 312

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  +I+    E N    L +  EM +  +   V+ Y +LI  +CK G + R  E   +M+
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
             G+  +   Y  L++G   +G + +A  +L+++ D+G+   +  YN++I G C   + +
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
            A  + E   +  L+PD  + + +L        +D   ++  + E ++  +  D   +  
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRV--KREMVEKGIKPDTITYSS 490

Query: 386 FLVG--KEERIMMALDVFEELKGKGYSSVP----IYNILMGALLEIGEVKKALYLFGKMR 439
            + G  ++ R   A D++EE+   G   +P     Y  L+ A    G+++KAL L  +M 
Sbjct: 491 LIQGFCEQRRTKEACDLYEEMLRVG---LPPDEFTYTALINAYCMEGDLEKALQLHNEMV 547

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY-----NC------- 487
              +  + +++S+ I    +     EA     K+     VPS   Y     NC       
Sbjct: 548 EKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKS 607

Query: 488 ---LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
              L KG C  G +  A  +    LG     P    Y + I   CR+G+  K   +  EM
Sbjct: 608 VVSLIKGFCMKGMMTEADQVFESMLGK-NHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEM 666

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE-HMKK 603
            + G   + V   A++  + K G + E   V  ++     L+EA      ++L+E + ++
Sbjct: 667 VKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQA---KVLVEINHRE 723

Query: 604 KTADLVLSGL 613
              D+VL  L
Sbjct: 724 GNMDVVLDVL 733



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 166/378 (43%), Gaps = 28/378 (7%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + E   +L +M  N   P V  Y A+I        ++  + V E+MK+  +  DV++
Sbjct: 393 KGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVS 452

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T++ G C+   V     + REM E GI  D   Y  LI+G   + +  +ACDL ++++
Sbjct: 453 YSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEML 512

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D   Y ++I   C     +KA +L    V+  + PD  T + L+    +  R  
Sbjct: 513 RVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTR 572

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
              +LL             L+ F+E  V  +      ++    ++ K   S+     + G
Sbjct: 573 EAKRLL-------------LKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKG 619

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            + E  +V      F  M G N + +  +++I I  H  +GDI +A   + ++++   + 
Sbjct: 620 MMTEADQV------FESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLL 673

Query: 481 SVAAYNCLTKGLCKIGEID----AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
                  L K L K G+++      + ++R C     S   + K  + I H  R G  + 
Sbjct: 674 HTVTVIALVKALHKEGKVNELNSVIVHVLRSC---ELSEAEQAKVLVEINH--REGNMDV 728

Query: 537 IIEVLNEMTQEGCPPNEV 554
           +++VL EM ++G  PN +
Sbjct: 729 VLDVLAEMAKDGFLPNGI 746


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 121/472 (25%), Positives = 214/472 (45%), Gaps = 33/472 (6%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
           +K  K N  +YNA    L +      A +V +LM  +G                   R  
Sbjct: 269 EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSK 328

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E   I E M  +   P+ F YTA+I     E N++  LR+ +EM    ++ +V+ Y  +I
Sbjct: 329 EAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMI 388

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G+ K G + +   LF EM   G+  D   Y +LI+G +    + KAC+LL ++      
Sbjct: 389 GGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLT 448

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
                Y+ +I GLC      KA ++ +  +++ + P+      L+    +  R +   +L
Sbjct: 449 PSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIEL 508

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG------KEERIMMALDVFEE-LKGKGYSSVPIYNIL 418
           L  M  +   V  DL  +   ++G       EE  M+ +D+ E+ +K   ++    Y   
Sbjct: 509 LKIM--IANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHT----YGAF 562

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + GE++ A   F  M    +  N++ ++I I+ H + G+ +EA      ++E   
Sbjct: 563 INLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGL 622

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           +P + AY+ +   L K G+   AM +    L      P  F Y   I   C+ G+ EK  
Sbjct: 623 IPDIRAYSAIIHSLSKNGKTKEAMGVFLKFL-KTGVVPDVFLYNSLISGFCKEGDIEKAS 681

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           ++ +EM   G  PN V+ + +I+G+CK G + +AR++F  + E+ L+ +  T
Sbjct: 682 QLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVT 733



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 195/415 (46%), Gaps = 9/415 (2%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           E+L++M RN  KP+VF Y  +I+    E   +  + + + M  + V  D+  Y  LI+GL
Sbjct: 472 EVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGL 531

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C+  +V     L  +M E GI  +   YG  I      G++  A    KD++ SG   + 
Sbjct: 532 CRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNN 591

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
            IY  +I G C V    +A   F+  ++  L PD    + ++   ++ G+      +  +
Sbjct: 592 VIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLK 651

Query: 369 MEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
              LK  V  D+  +   + G  KE  I  A  +++E+   G + ++ +YN L+  L ++
Sbjct: 652 F--LKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKL 709

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           GEV KA  LF ++   +L  + +++S  I  + +SG++ EA +  +++I     P    Y
Sbjct: 710 GEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIY 769

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
             L  G  K G ++ A+ L  +         + F   +     C+ G+  +  E+ ++M 
Sbjct: 770 CILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLID--SFCKHGKVIEARELFDDMV 827

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
            +   PN V  + +I    K   +EEA ++F ++  R ++   NT+ Y  +L+ +
Sbjct: 828 DKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNII--PNTLTYTSLLLSY 880



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 181/402 (45%), Gaps = 6/402 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I E L I ++M     K +V  Y AMI  +A    +   + ++ EM    +E D   
Sbjct: 359 EGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWT 418

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G  K   + +  EL  EMK   +      Y VLI GL     + KA ++L  ++
Sbjct: 419 YNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMI 478

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +G + ++ +Y ++I    +  +++ A +L ++ + + + PD    N L++      +++
Sbjct: 479 RNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVE 538

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYNI 417
               LL  M +      A     F  L  K   I +A   F+++   G   VP   IY I
Sbjct: 539 EAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGI--VPNNVIYTI 596

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+    ++G   +AL  F  M    L  +  ++S  I    ++G   EA     K ++  
Sbjct: 597 LIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTG 656

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
            VP V  YN L  G CK G+I+ A  L  + L N    P    Y   I  +C+ GE  K 
Sbjct: 657 VVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHN-GINPNIVVYNTLINGLCKLGEVTKA 715

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            E+ +E+ ++   P+ V  S II G CK G L EA K+F  +
Sbjct: 716 RELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEM 757



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/455 (23%), Positives = 207/455 (45%), Gaps = 30/455 (6%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           +G K N  +YNA+   +++                 G +A+ + +  +M     +PD + 
Sbjct: 375 RGLKLNVVTYNAMIGGIAK----------------AGEMAKAMSLFNEMLMAGLEPDTWT 418

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  +I       ++     +  EMK   +      Y  LI GLC    + + +E+  +M 
Sbjct: 419 YNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMI 478

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
            NG+  +  +YG LI+  V E +   A +LLK ++ +G   DL  YN +I GLCR K+ +
Sbjct: 479 RNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVE 538

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM---DNFFKLLAQMEKLKFSVAADLEK 382
           +A  L     +  + P+  T    +   ++ G +   + +FK     + L   +  +   
Sbjct: 539 EAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFK-----DMLSSGIVPNNVI 593

Query: 383 FFEFLVGKEE--RIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMR 439
           +   + G  +    + AL  F+ +  KG    +  Y+ ++ +L + G+ K+A+ +F K  
Sbjct: 594 YTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFL 653

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              +  +   ++  I    + GDI +A + +++++     P++  YN L  GLCK+GE+ 
Sbjct: 654 KTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVT 713

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A  L  D +      P    Y+  I   C+SG   +  ++ +EM  +G  P+  I   +
Sbjct: 714 KARELF-DEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCIL 772

Query: 560 ISGMCKHGTLEEARKVFTNLRERKL--LTEANTIV 592
           I G  K G LE+A  +F   +++ +  L+  N+++
Sbjct: 773 IDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLI 807



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/452 (23%), Positives = 200/452 (44%), Gaps = 22/452 (4%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRI-------------------A 185
           +KG K N  +Y A     S++   + A++  + M S G +                    
Sbjct: 549 EKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTV 608

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E L   + M      PD+ AY+A+I  L+        + V+ +  K  V  DV  Y +LI
Sbjct: 609 EALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLI 668

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G CK G + +  +L+ EM  NGI  +  +Y  LI GL   G+V KA +L  ++ +    
Sbjct: 669 SGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLV 728

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  Y++II G C+     +A+KLF+  +   ++PD      L+  C + G ++    L
Sbjct: 729 PDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSL 788

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
             + ++      +      +    K  +++ A ++F+++  K  + ++  Y IL+ A  +
Sbjct: 789 FHEAQQKSVGSLSAFNSLIDSFC-KHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGK 847

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
              +++A  LF  M   N+  N+L+++  +  + + G+  +       +          A
Sbjct: 848 AEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIA 907

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y  +    CK G+   A+ L+   L        +   AL I H+C+  +   ++E+L+EM
Sbjct: 908 YGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDAL-IFHLCKEKQISTVLELLSEM 966

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
            +E    +   C+ ++ G  K G  +EA KV 
Sbjct: 967 GKEELSLSSKTCNTLLLGFYKSGNEDEASKVL 998



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 120/516 (23%), Positives = 217/516 (42%), Gaps = 76/516 (14%)

Query: 114 LRRVTPDLVAEVLKVE--NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA 171
           +R++ P++V  VL+    ++      FF+W+  +        SY+ LA  L  + L   A
Sbjct: 80  VRKLNPEIVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQYLHSYSILAIRLCNSGLIHQA 139

Query: 172 DQVPE-LMDSQGRIAEMLEILEKMRR-----NLCKPDVF---------------AYTA-- 208
           D + E L+ ++    E+L+ L +  R     NL   D+F                + A  
Sbjct: 140 DNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASI 199

Query: 209 -------------MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVV 255
                        ++R L     +    +V+  M +  +  DV  Y  +I   CK G V+
Sbjct: 200 SEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVI 259

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
           +G  +  EM E     +   Y   I GL   G V +A ++ K +++ G   D   Y  ++
Sbjct: 260 KGKMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLV 318

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            G C+ K+  +A  +FE      L P+                              +F+
Sbjct: 319 DGFCKQKRSKEAKLIFESMPSSGLNPN------------------------------RFT 348

Query: 376 VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL 434
             A ++ F      KE  I  AL + +E+  +G   +V  YN ++G + + GE+ KA+ L
Sbjct: 349 YTALIDGFI-----KEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSL 403

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           F +M    LE ++ ++++ I  +++S D+ +ACE   ++      PS   Y+ L  GLC 
Sbjct: 404 FNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCH 463

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
             ++  A  ++   + N    P  F Y   I    +    E  IE+L  M   G  P+  
Sbjct: 464 SSDLQKANEVLDQMIRN-GVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLF 522

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             + +I G+C+   +EEA+ +  ++ E+ +   A+T
Sbjct: 523 CYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHT 558



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 96/201 (47%), Gaps = 3/201 (1%)

Query: 177  LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
            L+DS    G++ E  E+ + M      P++  YT +I        ++   +++ +M+   
Sbjct: 806  LIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRN 865

Query: 234  VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
            +  + + Y +L++   + G   +   LF++M+  GI  D   YGV+      EGK  +A 
Sbjct: 866  IIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEAL 925

Query: 294  DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
             LL   +  G + +  +++++I  LC+ KQ     +L     +++L+    T N LL+  
Sbjct: 926  KLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGF 985

Query: 354  AEMGRMDNFFKLLAQMEKLKF 374
             + G  D   K+L  M++L +
Sbjct: 986  YKSGNEDEASKVLGVMQRLGW 1006


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 200/419 (47%), Gaps = 12/419 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+     +L K+ +  C+PD  ++T +I+ L  E  +   L ++++M  +  + DV+ Y 
Sbjct: 124 RVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYA 183

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TLI GLCK G       L R M++     D  +YG LI  L  + +  +A +L  +++  
Sbjct: 184 TLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITK 243

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   ++   NS++  LC + ++     L    V   + P+  ++  ++    + G +   
Sbjct: 244 GISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQA 303

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYNILM 419
             ++  M   +  V  D+  +   + G   R  M  A+ VF+ +  KG + +V  YN L+
Sbjct: 304 HDVVDMM--FQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLI 361

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMS 477
               +I  + KA+YLF +M    L  N+++++  I   CHV  G + +A     +++   
Sbjct: 362 NGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHV--GRLQDAIALFREMVACG 419

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
           Q+P +  Y  L   LCK   +D AM L++   G+      +  Y + I  +CR+GE E  
Sbjct: 420 QIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQI-YTIVIDGMCRAGELEDA 478

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
            ++ + ++ +G  PN    + +  G+CK G L+EA K+F  + E      A+   Y+ I
Sbjct: 479 RDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENA--CSADGCTYNTI 535



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 191/433 (44%), Gaps = 12/433 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G  +  + +L  M +  C+PDV  Y  +I  L  +R       ++ EM    +  +++  
Sbjct: 193 GHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTC 252

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +L+  LC  G     + L  EM ++ I+ +      +++ L  EG V +A D++  +  
Sbjct: 253 NSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQ 312

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           SG   D+  Y ++I G C   + D+A K+F++ V    AP+  + N L+    ++ RMD 
Sbjct: 313 SGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDK 372

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMG 420
              L  +M + K              +    R+  A+ +F E+   G    +  Y IL+ 
Sbjct: 373 AMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLD 432

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L +   + KA+ L   + G NL+ +   ++I I     +G++ +A +  + +      P
Sbjct: 433 YLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKP 492

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +V  YN +T GLCK G +D A  L  +   N  S      Y        R+ E  + I++
Sbjct: 493 NVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADG-CTYNTITQGFLRNNETSRAIQL 551

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLE--EARKV---FTNLRERKLLTEANTIVYDE 595
           L EM   G    +V  + ++ GM     L+  EA K+   F +LR    +   +T+   E
Sbjct: 552 LEEMLARGFSC-DVSTTTLLVGMLSDDGLDQSEAHKLEDMFPHLR----IQVKDTVFCKE 606

Query: 596 ILIEHMKKKTADL 608
             I  + K  +DL
Sbjct: 607 DDINALGKVISDL 619



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 145/347 (41%), Gaps = 26/347 (7%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQV-PELMDS------------------QGRIAE 186
           KG   N  + N+L Y L     ++  + +  E++DS                  +G +A+
Sbjct: 243 KGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQ 302

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
             ++++ M ++  +PDV  YTA+I        +D  ++V++ M       +V +Y TLI 
Sbjct: 303 AHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLIN 362

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           G CK  R+ +   LF EM    ++ +   Y  LI GL   G++  A  L +++V  G   
Sbjct: 363 GYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIP 422

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           DL  Y  ++  LC+    DKA  L +     +L PD      ++      G +++   L 
Sbjct: 423 DLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLF 482

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEI 425
           + +                  + K   +  A  +F E+     S+    YN +    L  
Sbjct: 483 SNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRN 542

Query: 426 GEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            E  +A+ L  +M  RG + +V++ +  + +     S D L+  E H
Sbjct: 543 NETSRAIQLLEEMLARGFSCDVSTTTLLVGML----SDDGLDQSEAH 585


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 200/417 (47%), Gaps = 11/417 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN----LDACLRVWEEMKKDLVEAD 237
           GR+ + L  L+ MR++        Y  +++ L  E      L+  +  ++EMK   VE D
Sbjct: 116 GRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPD 175

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           + +Y  L+  L   GR+   H LF  M  +    D   Y VL++G    G+  +A  L+K
Sbjct: 176 LESYHILLSALSDSGRMAEAHALFSAMTCSP---DIMTYNVLMDGYCKIGQTYEAQSLMK 232

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           +++ +GY  ++  Y+ II   C++ + ++A+++F   ++ +  P+  T N L+    + G
Sbjct: 233 EILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAG 292

Query: 358 RMDNFFKLLAQMEKLKF-SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIY 415
            +++  KL A+MEK+   +         + L  K   +  A+D+F +L+G G + ++  Y
Sbjct: 293 MLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTY 352

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+    +   + +A+  F +M G     N +++SI I    +   + EA +    +  
Sbjct: 353 NSLIQGFCDARRLSEAMQYFDEMEG-KCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKA 411

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P+V  Y  L  G CK GE+ +A++     +      P    +   I  +C++  A 
Sbjct: 412 HGYTPTVVTYGGLINGFCKCGELKSALLFFEK-MKLAGCAPNTVIFNTLIDGLCKAERAN 470

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
             + +L  M  EGC P+ +  + +ISG+C    +E+A+++F  +     +T  N ++
Sbjct: 471 DGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGMACAPNVTTFNFLI 527



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 179/423 (42%), Gaps = 47/423 (11%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + L + +++   L  P+   Y  +IR       +   + V+ +MK   +  +     TL+
Sbjct: 15  QALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLL 74

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
           +GLC+ G++    +LFREM+    L   A + +L+ G    G+V  A   L+D+  S   
Sbjct: 75  LGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSS 134

Query: 306 ADLGIYNSIIGGLC----RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              G YN ++ GLC       + ++A + F+      + PD  + + LL   ++ GRM  
Sbjct: 135 VATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAE 194

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
              L + M     + + D                                +  YN+LM  
Sbjct: 195 AHALFSAM-----TCSPD--------------------------------IMTYNVLMDG 217

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
             +IG+  +A  L  ++     E N  ++SI I C+ +   + EA E   K+IE + VP+
Sbjct: 218 YCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPN 277

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS-GEAEKIIEV 540
              +N L  G CK G ++ A+ L  + +  +    T   Y   I  +C+  G     +++
Sbjct: 278 AVTFNTLIAGFCKAGMLEDAIKLFAE-MEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDL 336

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
            N++   G  P  V  +++I G C    L EA + F  +  +      N I Y  ILI+ 
Sbjct: 337 FNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGK---CAPNVITYS-ILIDG 392

Query: 601 MKK 603
           + K
Sbjct: 393 LCK 395



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 156/337 (46%), Gaps = 54/337 (16%)

Query: 312 NSIIGGLCRVKQFDKAYKLFE------------------------------VTVQDD--- 338
           N+++ GL   ++ D+A +LF+                              V+V  D   
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 339 --LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF---SVAADLEKFFEFLVGKEER 393
             L P+ ST+N LL+   E+G+M +  KL  +M+   F   S + ++     F+ G   R
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAG---R 117

Query: 394 IMMALDVFEELKGKGYSSVP--IYNILMGALL----EIGEVKKALYLFGKMRGLNLEVNS 447
           +  AL   ++++ K  SSV    YN+++  L         +++A+  F +M+   +E + 
Sbjct: 118 VRDALAHLQDMR-KSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDL 176

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
            S+ I +    +SG + EA   H     M+  P +  YN L  G CKIG+   A  L+++
Sbjct: 177 ESYHILLSALSDSGRMAEA---HALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKE 233

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            L      P  F Y++ I   C+  + E+  EV  +M +  C PN V  + +I+G CK G
Sbjct: 234 IL-KAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAG 292

Query: 568 TLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
            LE+A K+F  +   K+  +A  + Y+ ++    KK+
Sbjct: 293 MLEDAIKLFAEM--EKIGCKATIVTYNTLIDSLCKKR 327



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 172/436 (39%), Gaps = 63/436 (14%)

Query: 127 KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNN-------LFRAADQVPE--- 176
           K  N    A +FF    K  G + +  SY+ L   LS +        LF A    P+   
Sbjct: 152 KSANRLEQAMEFFKEM-KASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCSPDIMT 210

Query: 177 ---LMDSQGRIAEMLEILEKMRRNL---CKPDVFAYTAMIRVLAAERNLDACLRVWEEMK 230
              LMD   +I +  E    M+  L    +P+VF Y+ +I        ++    V+ +M 
Sbjct: 211 YNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMI 270

Query: 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE-GKV 289
           +     + + + TLI G CK G +    +LF EM++ G       Y  LI+ L  + G V
Sbjct: 271 ESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGV 330

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
             A DL   L  +G    +  YNS+I G C  ++  +A + F+  ++   AP+  T + L
Sbjct: 331 YTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFD-EMEGKCAPNVITYSIL 389

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY 409
           +         D   K+                           R+  A    E++K  GY
Sbjct: 390 I---------DGLCKV--------------------------RRMKEAAKTLEDMKAHGY 414

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEA 466
           + +V  Y  L+    + GE+K AL  F KM+      N++ F+  I   C  E  +    
Sbjct: 415 TPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLR 474

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
             CH  +      P V  YNCL  GLC    ++ A  L       +A  P    +   I 
Sbjct: 475 LLCH--MHAEGCKPDVITYNCLISGLCSANRVEDAQRL----FDGMACAPNVTTFNFLIR 528

Query: 527 HVCRSGEAEKIIEVLN 542
            +C   + E+   +L+
Sbjct: 529 GLCAQKKVEEARNILD 544


>gi|147790305|emb|CAN63320.1| hypothetical protein VITISV_026425 [Vitis vinifera]
          Length = 722

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 118/449 (26%), Positives = 198/449 (44%), Gaps = 29/449 (6%)

Query: 141 WAGKQKGYKHNFASYNALAYCLSRNNLFRAA-------------------DQVPELMDSQ 181
           ++ K+ G  HN ASY AL Y  S+  L+  A                     + + +  +
Sbjct: 247 YSLKKMGAVHNAASYTALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLCDE 306

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI + L+IL KM +  C PD+  Y  ++R L  +        + + + +  +  D   Y
Sbjct: 307 GRIGDALDILGKMGKEGCDPDIVTYNVILRELFHQDRYVEIGELLQVIDQKEISPDSFTY 366

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L  GL K G+V   ++L   +   G  +D A+Y +    L  E K G+A  LL+ +V+
Sbjct: 367 AALTGGLLKRGQVRVANKLLLYVISAGCTVDVAVYNIYFHCLCRENKSGEALSLLQSMVE 426

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G       YN+I+ G CR    D+A +LF+     + +PD  + N +L    + G    
Sbjct: 427 KGLVPTNVSYNTILNGFCRENHIDEALQLFDHFEWANNSPDVVSFNTILSAACKQGNSSM 486

Query: 362 FFKLLAQME----KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYN 416
             ++L +ME    KL    +  L ++F   +GK   I   L++ E +   G + +V  +N
Sbjct: 487 IRRVLYRMEYEGVKLNVVSSTCLIQYF-CAIGK---ISECLELLESMIRNGLNPTVVTFN 542

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           +L+  L + G +  A  +F + R      N+ S++I I   +  G+     +    +   
Sbjct: 543 MLLDKLCKNGLLGTAHRIFREFRNTGYFPNTTSYNILIHASIREGNDSLVEQLLRDMYSW 602

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P    Y    KGLCK G+I  A+ L RD +      PT   Y   +  + + G+   
Sbjct: 603 RLKPDAVTYGSFIKGLCKEGKISVAIQL-RDQMLESGLTPTVTIYNTILAAMFQRGKFWD 661

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCK 565
           I+ +L +MT +GC PN V    +   M K
Sbjct: 662 IVSLLKDMTMDGCEPNAVSIEILKQAMSK 690



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 163/419 (38%), Gaps = 40/419 (9%)

Query: 228 EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
            +KK     +  +Y  L+ G  K G       +  EMK +G   +   Y V+++ L  EG
Sbjct: 248 SLKKMGAVHNAASYTALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLCDEG 307

Query: 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
           ++G A D+L  +   G   D+  YN I+  L    ++ +  +L +V  Q +++PD  T  
Sbjct: 308 RIGDALDILGKMGKEGCDPDIVTYNVILRELFHQDRYVEIGELLQVIDQKEISPDSFTYA 367

Query: 348 PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK 407
            L     + G++    KLL  +     +V   +   +   + +E +   AL + + +  K
Sbjct: 368 ALTGGLLKRGQVRVANKLLLYVISAGCTVDVAVYNIYFHCLCRENKSGEALSLLQSMVEK 427

Query: 408 GYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLN------------------------ 442
           G     + YN ++        + +AL LF      N                        
Sbjct: 428 GLVPTNVSYNTILNGFCRENHIDEALQLFDHFEWANNSPDVVSFNTILSAACKQGNSSMI 487

Query: 443 -----------LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
                      +++N +S +  IQ     G I E  E    +I     P+V  +N L   
Sbjct: 488 RRVLYRMEYEGVKLNVVSSTCLIQYFCAIGKISECLELLESMIRNGLNPTVVTFNMLLDK 547

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
           LCK G +  A  + R+   N    P    Y + I    R G    + ++L +M      P
Sbjct: 548 LCKNGLLGTAHRIFRE-FRNTGYFPNTTSYNILIHASIREGNDSLVEQLLRDMYSWRLKP 606

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK-KTADLV 609
           + V   + I G+CK G +  A ++   + E  L       +Y+ IL    ++ K  D+V
Sbjct: 607 DAVTYGSFIKGLCKEGKISVAIQLRDQMLESGL--TPTVTIYNTILAAMFQRGKFWDIV 663



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 164/413 (39%), Gaps = 22/413 (5%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA---CLRVWEEMKKDLV 234
           M S G +       E+M R+   P   ++T+++++L     L +    + V+E M +   
Sbjct: 128 MTSTGNLRAAFFFAEEMWRSGFLP---SFTSLLKILKKWLGLGSLVDSMSVFEFMLRLEY 184

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
                    LI  L K G     H +FR +   G L     Y  ++  L   G+   A  
Sbjct: 185 FPTEPTLNLLISMLSKAGMAREAHFVFRVLLGKGCLKCAHSYNPILWALCKCGQSYTALA 244

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           LL  L   G   +   Y +++ G  +   +++A+ + +    D   P+  T   ++    
Sbjct: 245 LLYSLKKMGAVHNAASYTALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLC 304

Query: 355 EMGRMDNFFKLLAQMEK-------LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK 407
           + GR+ +   +L +M K       + ++V   L + F      ++R +   ++ + +  K
Sbjct: 305 DEGRIGDALDILGKMGKEGCDPDIVTYNVI--LRELFH-----QDRYVEIGELLQVIDQK 357

Query: 408 GYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
             S     Y  L G LL+ G+V+ A  L   +      V+   ++I   C        EA
Sbjct: 358 EISPDSFTYAALTGGLLKRGQVRVANKLLLYVISAGCTVDVAVYNIYFHCLCRENKSGEA 417

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
                 ++E   VP+  +YN +  G C+   ID A+ L  D      + P    +   + 
Sbjct: 418 LSLLQSMVEKGLVPTNVSYNTILNGFCRENHIDEALQLF-DHFEWANNSPDVVSFNTILS 476

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             C+ G +  I  VL  M  EG   N V  + +I   C  G + E  ++  ++
Sbjct: 477 AACKQGNSSMIRRVLYRMEYEGVKLNVVSSTCLIQYFCAIGKISECLELLESM 529


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 121/474 (25%), Positives = 217/474 (45%), Gaps = 32/474 (6%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           + +L +  +M      PDV+    +I  L     +D       ++ K   + D   + TL
Sbjct: 62  STLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTL 121

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLC  G++     LF +M   G   +   YG LI GL  + +V +A ++  +++  G 
Sbjct: 122 IRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGI 181

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  YNS+I GLC++ ++     L    V   + PD  T+N ++    + G +     
Sbjct: 182 SPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHD 241

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKG-YSSVPIYNILMGA 421
           ++  M  +   V  ++  +   + G      + +A+ VF+ +  K   ++V  YN L+  
Sbjct: 242 VVDMM--IHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLING 299

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQV 479
             +I  V KA+YLF +M    L  N+++++  I   CHV  G + +A    ++++   Q+
Sbjct: 300 YCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHV--GRLQDAISLFHEMVARGQI 357

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH-VCRSGEAEKII 538
           P +  Y  L+  LCK   +D AM L++   G  ++   + +   TIL  +CR+GE E   
Sbjct: 358 PDLVTYRTLSDYLCKNRHLDKAMALLKAIEG--SNWDPDIQIYTTILDGMCRAGELEDAR 415

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT--------------NLRERKL 584
           ++ + ++ +G  PN    + +I G+CK G L EA K+F+              NL  R  
Sbjct: 416 DLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGF 475

Query: 585 LTEANTIVYDEILIEHMKK------KTADLVLSGLKFFGLESKLKAKGCKLLSS 632
           L     +   E+L E + +       T  L++  L   GL+  +K   CK  SS
Sbjct: 476 LRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSSS 529



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 176/395 (44%), Gaps = 3/395 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+I E L + +KM     +P+V  Y  +I  L  +R +     ++ EM    +  +++ 
Sbjct: 128 EGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVT 187

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI GLCK         L  EM ++ I+ D      +++ L  EG V +A D++  ++
Sbjct: 188 YNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMI 247

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   ++  YN+++ G C   + D A K+F+  V  D   +  + N L+    ++  +D
Sbjct: 248 HRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVD 307

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILM 419
               L  +M + + +            +    R+  A+ +F E+  +G    +  Y  L 
Sbjct: 308 KAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLS 367

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L +   + KA+ L   + G N + +   ++  +     +G++ +A +  + +      
Sbjct: 368 DYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQ 427

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+V  YN +  GLCK G +  A  L  +   N  S P +  Y L      R+ EA + IE
Sbjct: 428 PNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCS-PNDCTYNLITRGFLRNNEALRTIE 486

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
           +L EM   G    +V  + ++ GM     L+++ K
Sbjct: 487 LLEEMLARGFSV-DVSTTTLLVGMLSDDGLDQSVK 520



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 191/441 (43%), Gaps = 42/441 (9%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P    +T ++  +A  ++    L +  +M    +  DV     LI   C   R+     +
Sbjct: 579 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSV 638

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             ++ + G   D   YG L+ GL               ++  G   D+  YNS+I  LC 
Sbjct: 639 LAKLLKLGFQPDVVTYGTLMNGLC-------------KMITKGISPDIFTYNSLIHALCN 685

Query: 321 VKQFDKAYKLFEVTVQDDLAPD---FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
           + ++     L    V   + P+   FSTV   L  C E G +     ++  M  +K  V 
Sbjct: 686 LCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDAL--CKE-GMIAIAHDVVDMM--IKRGVE 740

Query: 378 ADLEKFFEFLVGKEERIMM--ALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYL 434
            D+  +   + G   R  M  A+ VF+ +  KG   +V  YNIL+    +I  + KA+ L
Sbjct: 741 PDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGL 800

Query: 435 FGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
             +M    L  ++++++  I   CHV  G +  A    ++++   Q+P +  Y  L   L
Sbjct: 801 LEQMSLQGLIADTVTYNTLIHGLCHV--GRLQHAIALFHEMVASGQIPDLVTYRILLDYL 858

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           CK   +  AM+L++   G+         Y + I  +CR+GE E   ++ + ++ +G  P+
Sbjct: 859 CKNHHLAEAMVLLKAIEGSNLDADI-LVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPD 917

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN------TIVYDEILIEHMKKKTA 606
               + +I G+CK G L+EA K+F  + E  + + +       +++Y +I++  +     
Sbjct: 918 VRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSNSTSSRNQKSLIYQKIMLPEI----- 972

Query: 607 DLVLSGLKFFGLESKLKAKGC 627
           DLV S    F  E      GC
Sbjct: 973 DLVYSISVMF--EKMFICHGC 991



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 102/449 (22%), Positives = 182/449 (40%), Gaps = 37/449 (8%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
            +G + N  +YNAL   +CL RN +  A                 +++ + M    C  +
Sbjct: 248 HRGVEPNVVTYNALMDGHCL-RNEVDVA-----------------VKVFDTMVHKDCVAN 289

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V +Y  +I      +++D  + ++EEM +  +  + + Y TLI GLC  GR+     LF 
Sbjct: 290 VISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFH 349

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EM   G + D   Y  L + L     + KA  LLK +  S +  D+ IY +I+ G+CR  
Sbjct: 350 EMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAG 409

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           + + A  LF       L P+  T N ++    + G +    KL ++M K   S       
Sbjct: 410 ELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYN 469

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK---- 437
                  +    +  +++ EE+  +G+S  V    +L+G L + G  +    +  K    
Sbjct: 470 LITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSSS 529

Query: 438 -------MRGLN--LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
                  MR L      +S +   +   H  + D  +A    N+++ M   PS   +  L
Sbjct: 530 SRPSGTQMRSLPPLFLSSSHNSLHSRSPHFNTLD--DALSSFNRMLHMHPPPSTVDFTKL 587

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
              + K+      + L    + +    P  +   + I   C          VL ++ + G
Sbjct: 588 LTSIAKMKHYSTVLSLSTQ-MDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLG 646

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFT 577
             P+ V    +++G+CK  T   +  +FT
Sbjct: 647 FQPDVVTYGTLMNGLCKMITKGISPDIFT 675



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 96/198 (48%), Gaps = 3/198 (1%)

Query: 177 LMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD     +EM   +++ + M    C P+V +Y  +I      + +D  + + E+M    
Sbjct: 749 LMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQG 808

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           + AD + Y TLI GLC  GR+     LF EM  +G + D   Y +L++ L     + +A 
Sbjct: 809 LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAM 868

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            LLK +  S   AD+ +YN  I G+CR  + + A  LF       L PD  T N ++   
Sbjct: 869 VLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGL 928

Query: 354 AEMGRMDNFFKLLAQMEK 371
            + G +D   KL  +M++
Sbjct: 929 CKRGLLDEANKLFRKMDE 946



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 162/399 (40%), Gaps = 41/399 (10%)

Query: 72  PPSDPKTFQLQRHLSPIARF------ITDAFRKNQFQWGPQVVT------ELSKLRRV-- 117
           PP  P T    + L+ IA+       ++ + + + F   P V T          LRR+  
Sbjct: 577 PP--PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGY 634

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGK----QKGYKHNFASYNALAYCLSRNNLFRAADQ 173
              ++A++LK+   P + +      G      KG   +  +YN+L + L     ++    
Sbjct: 635 AFSVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGISPDIFTYNSLIHALCNLCEWK---- 690

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
                        +  +L +M  +   P+V  ++ ++  L  E  +     V + M K  
Sbjct: 691 ------------HVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRG 738

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           VE DV+ Y  L+ G C    +    ++F  M   G + +   Y +LI G     ++ KA 
Sbjct: 739 VEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAM 798

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            LL+ +   G  AD   YN++I GLC V +   A  LF   V     PD  T   LL   
Sbjct: 799 GLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYL 858

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS- 410
            +   +     LL  +E       AD+  +   + G  +   +  A D+F  L  KG   
Sbjct: 859 CKNHHLAEAMVLLKAIEGSNLD--ADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQP 916

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
            V  YNI++  L + G + +A  LF KM   ++  NS S
Sbjct: 917 DVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSNSTS 955


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 216/466 (46%), Gaps = 25/466 (5%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEM 187
           G  H+  +Y+    C  R +    A  V   M   G                   RI++ 
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           + ++++M     KPD F +T +I  L         + + ++M +   + D++ Y T++ G
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK G +     L ++M++  I  D  IY  +I+GL     +  A +L  ++ + G R D
Sbjct: 233 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPD 292

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  Y+S+I  LC   ++  A +L    ++  + P+  T + L+    + G++    KL  
Sbjct: 293 VFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 352

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLE 424
           +M  +K S+  D+  +   + G    +R+  A  +FE +  K  + +V  Y+ L+    +
Sbjct: 353 EM--IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCK 410

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
              V++ + LF +M    L  N+++++  I    ++ D   A     +++ +   P++  
Sbjct: 411 AKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILT 470

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN L  GLCK G++ A  M+V + L      P  + Y + I  +C++G+ E   E+   +
Sbjct: 471 YNILLDGLCKNGKL-AKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNL 529

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           + +G  PN +  + +ISG C+ G+ EEA  +   ++E   L  + T
Sbjct: 530 SLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGT 575



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 120/526 (22%), Positives = 230/526 (43%), Gaps = 35/526 (6%)

Query: 77  KTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLAS 136
           +T  +   L   + FI    R++Q      V+ ++ KL    PD+V   L    N    S
Sbjct: 110 QTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLG-YEPDIVT--LSSLLNGYCHS 166

Query: 137 KFFHWAGK------QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEI 190
           K    A        + GYK +  ++  L + L  +N                + +E + +
Sbjct: 167 KRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHN----------------KASEAVAL 210

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
           +++M +  C+PD+  Y  ++  L    ++D  L + ++M+K  +EADV+ Y T+I GLCK
Sbjct: 211 VDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCK 270

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
              +     LF EM   GI  D   Y  LI  L   G+   A  LL D+++     ++  
Sbjct: 271 YKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVT 330

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD---NFFKLLA 367
           ++++I    +  +  +A KL++  ++  + PD  T + L+       R+D   + F+L+ 
Sbjct: 331 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 390

Query: 368 QMEKLKFSVA-ADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEI 425
             +     V  + L K F     K +R+   +++F E+  +G   +   Y  L+    + 
Sbjct: 391 SKDCFPNVVTYSTLIKGF----CKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQA 446

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
            +   A  +F +M  + +  N L+++I +    ++G + +A      +   +  P +  Y
Sbjct: 447 RDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTY 506

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           N + +G+CK G+++    L  + L      P    Y   I   CR G  E+   +L +M 
Sbjct: 507 NIMIEGMCKAGKVEDGWELFCN-LSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMK 565

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           ++G  PN    + +I    + G  E + ++   +R      +A+TI
Sbjct: 566 EDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI 611



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/457 (23%), Positives = 201/457 (43%), Gaps = 28/457 (6%)

Query: 131 NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEI 190
           NP     FF+  G    ++ +FAS +     + RN   R +D +        ++ + +++
Sbjct: 23  NPPTVPSFFNLCG-SGCWERSFASASGDYREILRN---RLSDII--------KVDDAVDL 70

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
              M ++   P +  +  ++  +A     +  + + E+M+   +  D+  Y   I   C+
Sbjct: 71  FGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCR 130

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
             ++     +  +M + G   D      L+ G     ++  A  L+  +V+ GY+ D   
Sbjct: 131 RSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFT 190

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           + ++I GL    +  +A  L +  VQ    PD  T   ++    + G +D    LL +ME
Sbjct: 191 FTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKME 250

Query: 371 KLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGE 427
           K K  + AD+  +   + G  K + +  AL++F E+  KG    V  Y+ L+  L   G 
Sbjct: 251 KGK--IEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGR 308

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
              A  L   M    +  N ++FS  I   V+ G ++EA + ++++I+ S  P +  Y+ 
Sbjct: 309 WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 368

Query: 488 LTKGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
           L  G C    +D A     +M+ +DC  NV +      Y+  I   C++   E+ +E+  
Sbjct: 369 LINGFCMHDRLDEAKHMFELMISKDCFPNVVT------YSTLIKGFCKAKRVEEGMELFR 422

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           EM+Q G   N V  + +I G  +    + A+ VF  +
Sbjct: 423 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 459



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 1/163 (0%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P++  Y  ++  L     L   + V+E +++  +E D+  Y  +I G+CK G+V  G EL
Sbjct: 466 PNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWEL 525

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F  +   G+  +   Y  +I G   +G   +A  LLK + + G   + G YN++I    R
Sbjct: 526 FCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLR 585

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
               + + +L +       A D ST+  L+      GR+D  F
Sbjct: 586 DGDREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRLDKSF 627


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 195/406 (48%), Gaps = 10/406 (2%)

Query: 189 EILEKMRRN-LCKPDVFAYTAMIRVLAAERNLD-ACLRVWEEMKKDLVEADVMAYVTLIM 246
           E+L++MR      PD+  Y+ +I     +  +D AC  + E + +D +  DV+ Y +++ 
Sbjct: 30  EVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGMAPDVVTYTSVVD 89

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC+ G++ R  E+ REMK  G+  D+  +  LI G     KV +A  L K+++ S  R 
Sbjct: 90  GLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRL 149

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLA--PDFSTVNPLLVCCAEMGRMDNFF 363
           D    +++I GLCR ++  +AY+LF E+ +++D A  PD  T   L+    + G ++   
Sbjct: 150 DAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAM 209

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMG 420
           K+L  ME  K     ++  +   L G  K   +  ALD+F  +  KG   +V  Y  L+ 
Sbjct: 210 KMLGVMEGRK--CVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIH 267

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L    +V  A  L  +M       +++S++  +  +   G I EA +   ++   S +P
Sbjct: 268 GLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLP 327

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
               Y CL +G C    ++ A  L+ +        P    Y++ +    R+    +  E 
Sbjct: 328 DRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEF 387

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
           + EM      PN V  S++I G+CK G +  A +V  N+ +  ++T
Sbjct: 388 IQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKPDVVT 433



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 169/358 (47%), Gaps = 11/358 (3%)

Query: 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN-GILIDRAIYGVLIEGLVGEGKV 289
           ++ V  +   Y  ++ GLCK     + +E+ +EM++   +  D   Y  +I G   +G++
Sbjct: 2   REFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEM 61

Query: 290 GKACDLLKDLVD-SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
            +AC++L+++V   G   D+  Y S++ GLCR  + D+A ++        + PD  T + 
Sbjct: 62  DRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSA 121

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELK- 405
           L+       ++D   KL  ++  L  S   D       + G  +E RI  A ++F+E++ 
Sbjct: 122 LITGWCNARKVDEALKLYKEI--LTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEM 179

Query: 406 ---GKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
              G     V  Y  L+    + G ++KA+ + G M G     N +++S  +    ++GD
Sbjct: 180 REDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGD 239

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
           + +A +   ++     VP+V  Y  L  GLC   ++DAA +L+ +         T   Y 
Sbjct: 240 LDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADT-VSYN 298

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
             +   CR G  E+  ++  EM  + C P+ +  + ++ G C    LEEAR +  N++
Sbjct: 299 ALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMK 356



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 186/410 (45%), Gaps = 55/410 (13%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + + L++  +M    C P+V  YT +I  L A   +DA   + +EM      AD ++Y
Sbjct: 238 GDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSY 297

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL-V 300
             L+ G C+ GR+    +LF+EM     L DR  Y  L+ G     ++ +A  LL+++  
Sbjct: 298 NALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKT 357

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +G   D+  Y+ ++ G  R K+F +A +  +  +  ++AP+  T + L+    + GR++
Sbjct: 358 AAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVN 417

Query: 361 NFFKLLAQMEK---LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYN 416
           +  ++L  ++K   + +++        E L G  +R   AL + EE+  K    SV  +N
Sbjct: 418 HAMEVLKNVDKPDVVTYTI------VIEGLCGT-DRTEEALTLLEEMVNKRVEPSVGTFN 470

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++GAL  +G++ +A  L   M    LE   ++++  ++    +G +  A E    +   
Sbjct: 471 SVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRK 530

Query: 477 SQVPSVA-------AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
           ++  S A       A++ L +GLCK  EID AM                           
Sbjct: 531 AKKSSSAANLVPEQAFSALIRGLCKAREIDKAM--------------------------- 563

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
                     V+ E+    C P E  C AI+ G+ + G  EEA K+  ++
Sbjct: 564 ---------AVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSI 604



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 114/506 (22%), Positives = 220/506 (43%), Gaps = 41/506 (8%)

Query: 106 QVVTELSKLRRVTPDLVAEVLKV-----ENNPTLASKFFHWAGKQKGYKHNFASYNALAY 160
           +V+ E+   + V PDLV     +     +     A +       + G   +  +Y ++  
Sbjct: 30  EVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGMAPDVVTYTSVVD 89

Query: 161 CLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLD 220
            L R+                G++    E++ +M+    +PD F ++A+I      R +D
Sbjct: 90  GLCRD----------------GKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVD 133

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR--EMKENGILI-DRAIYG 277
             L++++E+       D ++   LI GLC+  R+   +ELF+  EM+E+G    D   Y 
Sbjct: 134 EALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYT 193

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
            LI+G    G + KA  +L  +       ++  Y+S++ GLC+    D+A  LF      
Sbjct: 194 ALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSK 253

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIM 395
              P+  T   L+       ++D    L+ +M        AD   +   L G  +  RI 
Sbjct: 254 GCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTAT--CCPADTVSYNALLDGYCRLGRIE 311

Query: 396 MALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMR-GLNLEVNSLSFS 451
            A  +F+E+  K  S +P    Y  L+        +++A +L   M+    ++ + +++S
Sbjct: 312 EAKQLFKEMAAK--SCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYS 369

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
           I +  +  +   +EA E   ++I  +  P+   Y+ L  GLCK G ++ AM ++++    
Sbjct: 370 IVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKN---- 425

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
               P    Y + I  +C +   E+ + +L EM  +   P+    +++I  +C+ G ++E
Sbjct: 426 -VDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDE 484

Query: 572 ARKVFTNLRERKLLTEANTIVYDEIL 597
           A K+   +    L  E   + Y  +L
Sbjct: 485 AWKLLVAMAAHGL--EPGMVTYTTLL 508



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 145/300 (48%), Gaps = 23/300 (7%)

Query: 311 YNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
           YN ++ GLC+ +   KAY++  E+     +APD  T + ++    + G MD   ++L +M
Sbjct: 12  YNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREM 71

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIG 426
              +  +A D+  +   + G  ++ ++  A ++  E+K KG       ++ L+       
Sbjct: 72  VT-RDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNAR 130

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ----VPSV 482
           +V +AL L+ ++   +  ++++S S  I        I EA E   + +EM +     P V
Sbjct: 131 KVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQE-MEMREDGAWKPDV 189

Query: 483 AAYNCLTKGLCKIGEIDAAMMLV-----RDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             Y  L  G CK G ++ AM ++     R C+ NV +      Y+  +  +C++G+ ++ 
Sbjct: 190 VTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVT------YSSLLHGLCKAGDLDQA 243

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +++   MT +GC PN V  + +I G+C    ++ AR +   +        A+T+ Y+ +L
Sbjct: 244 LDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEM--TATCCPADTVSYNALL 301



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 4/106 (3%)

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+   YN +  GLCK      A  ++++     +  P    Y+  I   C+ GE ++  E
Sbjct: 7   PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 66

Query: 540 VLNEM-TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           +L EM T++G  P+ V  ++++ G+C+ G ++ A ++   +RE KL
Sbjct: 67  ILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEM---VREMKL 109


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 196/404 (48%), Gaps = 6/404 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E   ++E M +N   PD + Y  MI     +  +   +R+ EEM+   +  DV+ Y
Sbjct: 281 GWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTY 340

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G  + G    G +L  EM+  G+  +   Y V+++  V +GK+ +    ++ + +
Sbjct: 341 NTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEE 400

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           SG   D+  YN++I   C+V + D+A++L +   +  L  D  T+N +L       ++D 
Sbjct: 401 SGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDE 460

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
              LL    +  + V  D   +   ++G  K E+   AL +++E+K K    S+  YN +
Sbjct: 461 AHDLLCSARRRGYFV--DEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSM 518

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L ++G+  +A+    ++    L  + ++++  I  + + G + +A + HNK++E + 
Sbjct: 519 IAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNF 578

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P V   N L  GLCK G ++ A+ L    +           Y   IL +C+     +  
Sbjct: 579 KPDVVTCNTLLCGLCKEGMLEKALKLFNTWISK-GKDVDAVSYNTIILSLCKEKRFGEAF 637

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           ++L EM ++   P+    +AI+ G+   G +++A +  + + E+
Sbjct: 638 DLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEK 681



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 199/430 (46%), Gaps = 14/430 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + R  E + +L KMR   C PD   Y  ++  L  +  L+    +  +MK   +  +   
Sbjct: 210 ENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTT 269

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  L++G C+ G +     +   M +N ++ D   Y V+I G   +G++ +A  L +++ 
Sbjct: 270 FNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEME 329

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +     D+  YN++I G       ++ +KL E      + P+  T N ++    + G+MD
Sbjct: 330 NLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMD 389

Query: 361 NFFKLLAQMEK---LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YN 416
              K + +ME+   L   V  +    +   VGK +    A  + +E+  KG     +  N
Sbjct: 390 EVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDE---AFRLMDEMGRKGLKMDDVTLN 446

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++ AL    ++ +A  L    R     V+ +S+   I  + +     +A    +++ E 
Sbjct: 447 TMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEK 506

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEA 534
             +PS+  YN +  GLC++G+ + A+  + + L    SG  P E  Y   I   C+ G+ 
Sbjct: 507 EIIPSIITYNSMIAGLCQMGKTNQAIDKLDELL---ESGLVPDEITYNTIIHGYCQEGQV 563

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           EK  +  N+M ++   P+ V C+ ++ G+CK G LE+A K+F     +    + + + Y+
Sbjct: 564 EKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKG--KDVDAVSYN 621

Query: 595 EILIEHMKKK 604
            I++   K+K
Sbjct: 622 TIILSLCKEK 631



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/419 (21%), Positives = 184/419 (43%), Gaps = 40/419 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA---AERNLDACLRVWEEMKKDLVEADV 238
           GR  +  +I  +M+R   +P +     ++  L    +  ++     V+ +  K  V+ + 
Sbjct: 138 GRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINT 197

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
            ++  LI G C   R      +  +M++ G   D   Y  +++GL  +G++ +A DLL D
Sbjct: 198 NSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLD 257

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           + + G   +   +N ++ G CR+    +A  + E+  Q+ + PD  T N ++    + GR
Sbjct: 258 MKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGR 317

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL 418
           +    +L  +ME LK S                                    V  YN L
Sbjct: 318 IAEAMRLREEMENLKLS----------------------------------PDVVTYNTL 343

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    E G  ++   L  +M G  ++ NS+++++ ++  V+ G + E  +   K+ E   
Sbjct: 344 INGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGC 403

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           +P +  YN L    CK+G++D A  L+ D +G       +      +  +CR  + ++  
Sbjct: 404 LPDIVTYNTLISWHCKVGKMDEAFRLM-DEMGRKGLKMDDVTLNTMLRALCRERKLDEAH 462

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           ++L    + G   +EV    +I G  KH    +A +++  ++E++++   + I Y+ ++
Sbjct: 463 DLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEII--PSIITYNSMI 519



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 135/321 (42%), Gaps = 34/321 (10%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ E+ + + KM  + C PD+  Y  +I        +D   R+ +EM +  ++ D + 
Sbjct: 385 KGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVT 444

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             T++  LC+  ++   H+L    +  G  +D   YG LI G     K  +A  L  ++ 
Sbjct: 445 LNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMK 504

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +      +  YNS+I GLC++ + ++A    +  ++  L PD  T N ++    + G+++
Sbjct: 505 EKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVE 564

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
             F+   +M          +EK F+                          V   N L+ 
Sbjct: 565 KAFQFHNKM----------VEKNFK------------------------PDVVTCNTLLC 590

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L + G ++KAL LF        +V+++S++  I    +     EA +   ++ E    P
Sbjct: 591 GLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGP 650

Query: 481 SVAAYNCLTKGLCKIGEIDAA 501
               YN +  GL   G +  A
Sbjct: 651 DCYTYNAILGGLTDAGRMKDA 671



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 57/123 (46%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ +  +   KM     KPDV     ++  L  E  L+  L+++        + D ++
Sbjct: 560 EGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVS 619

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I+ LCK  R     +L  EM+E  +  D   Y  ++ GL   G++  A + +  + 
Sbjct: 620 YNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIA 679

Query: 301 DSG 303
           + G
Sbjct: 680 EKG 682


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 133/562 (23%), Positives = 251/562 (44%), Gaps = 50/562 (8%)

Query: 74  SDPKTFQLQRHL--SPIARFI---TDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVL-K 127
           ++P   + QR    SP ++F+   TD  R NQ  W   +       + + P  V +VL +
Sbjct: 11  TNPNFLRKQRTFCASPDSQFVACLTDIVRGNQ-SWRVALNNSFIS-QTLKPHHVEKVLIQ 68

Query: 128 VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV----------PE- 176
             ++  LA +FF++ G  K + H+  S+  L + L ++NL+  A  +          PE 
Sbjct: 69  TLDDSRLALRFFNFLGLHKNFDHSTTSFCILIHALVQSNLYWPASSLLQTLLLRGLNPEG 128

Query: 177 ----LMDSQGR--------IAEMLEILEKMRRNL-----------CK--PDVFAYTAMIR 211
                +DS  +           +++   + RR L           C   P +   + ++ 
Sbjct: 129 LFESFLDSYRKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLN 188

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
            L   R     L +++E+    +  DV  Y  ++  LC+    +R  E+   M+ +G  +
Sbjct: 189 GLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDL 248

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
             A Y V I GL    +V +A ++   L   G RAD+G Y +++ GLC+V++F+   ++ 
Sbjct: 249 SVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMM 308

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VG 389
              ++    P  + V+ L+    + G + + F L+ +++  KF VA  L  +   +  + 
Sbjct: 309 NEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVK--KFGVAPSLFVYNALINSMC 366

Query: 390 KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           K+ ++  A  +F  +  KG + +   Y+IL+ +  + G++  AL+  GKM  + ++    
Sbjct: 367 KDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVY 426

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
            +S  I  H + G +  A    +++I     P+V  Y  L  G CK GE+  A  L  + 
Sbjct: 427 PYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEM 486

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
            G   S P  + +   I  +C +    +  ++  EM +    PNEV  + +I G CK G 
Sbjct: 487 TGKGIS-PNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGN 545

Query: 569 LEEARKVFTNLRERKLLTEANT 590
              A ++   + E+ L+ +  T
Sbjct: 546 TVRAFELLDEMVEKGLVPDTYT 567



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 195/419 (46%), Gaps = 26/419 (6%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWE--EMKKDL----VEADVMAYV 242
           E++ +M  + C   V  Y   IR L   +      RVWE  E+K  L    + ADV  Y 
Sbjct: 236 EVIGRMESSGCDLSVATYNVFIRGLCKNQ------RVWEAVEIKNLLSYKGLRADVGTYC 289

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TL++GLCK      G E+  EM E G +   A    L++GL  +G +G A DL+  +   
Sbjct: 290 TLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKF 349

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G    L +YN++I  +C+  + D+A  LF       L P+  T + L+    + G++D  
Sbjct: 350 GVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVA 409

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILM 419
              L +M ++   + A +  +   + G  K  ++  A  +F+E+   G   +V IY  L+
Sbjct: 410 LHFLGKMTEV--GIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLI 467

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               + GE+  A  L+ +M G  +  N+ +F+  I     +  + EA +   +++E + +
Sbjct: 468 SGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVI 527

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+   YN L +G CK G    A  L+ D +      P  + Y   I  +C +G   +  E
Sbjct: 528 PNEVTYNVLIEGHCKEGNTVRAFELL-DEMVEKGLVPDTYTYRPLISGLCSTGRVSEARE 586

Query: 540 VLNEMTQ--------EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            +N++          EGC PN V  +A+I+G+CK G +++A  +   +     L   NT
Sbjct: 587 FMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNT 645



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 121/483 (25%), Positives = 209/483 (43%), Gaps = 61/483 (12%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQ----------------VPELMDS---QGRIAE 186
           KG + +  +Y  L   L +   F A ++                V  L+D    +G I  
Sbjct: 279 KGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGS 338

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM-KKDLVEADVMAYVTLI 245
             +++ K+++    P +F Y A+I  +  +  LD    ++  M  K L   DV  Y  LI
Sbjct: 339 AFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDV-TYSILI 397

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              CK G++        +M E GI      Y  LI G    GK+  A  L  +++ +G +
Sbjct: 398 DSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLK 457

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            ++ IY S+I G C+  +   A++L+       ++P+  T   L+       RM    KL
Sbjct: 458 PNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKL 517

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IYNILMG 420
             +M  ++++V  +   +   + G  KE   + A ++ +E+  KG   VP    Y  L+ 
Sbjct: 518 FGEM--VEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGL--VPDTYTYRPLIS 573

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L   G V +A      ++G   ++N                 +E C           +P
Sbjct: 574 GLCSTGRVSEAREFMNDLQGEQQKLNE----------------IEGC-----------LP 606

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +V  Y  L  GLCKIG +D A +L R+ L +  S P +  YA  + ++   G  EK I+ 
Sbjct: 607 NVVTYTALINGLCKIGLMDKAELLCREMLAS-NSLPNQNTYACFLDYLTSEGNIEKAIQ- 664

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           L+++  EG   N V  + +I G CK G ++EA +V  N+ +  +    + I Y  I+ E+
Sbjct: 665 LHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGI--SPDCISYSTIIYEY 722

Query: 601 MKK 603
            ++
Sbjct: 723 CRR 725



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 194/432 (44%), Gaps = 19/432 (4%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           M   G++ E   +   M      P+   Y+ +I        LD  L    +M +  ++A 
Sbjct: 365 MCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKAT 424

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V  Y +LI G CK G++     LF EM  NG+  +  IY  LI G   EG++  A  L  
Sbjct: 425 VYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYH 484

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           ++   G   +   + ++I GLC   +  +A KLF   V+ ++ P+  T N L+    + G
Sbjct: 485 EMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEG 544

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS----- 410
                F+LL +M  ++  +  D   +   + G     R+  A +   +L+G+        
Sbjct: 545 NTVRAFELLDEM--VEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIE 602

Query: 411 ----SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
               +V  Y  L+  L +IG + KA  L  +M   N   N  +++  +      G+I +A
Sbjct: 603 GCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKA 662

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI-DAAMMLVRDCLGNVASGPTEFKYALTI 525
            + H+ ++E   + +   YN L +G CK+G I +AA +LV   + +    P    Y+  I
Sbjct: 663 IQLHDVLLE-GFLANTVTYNILIRGFCKLGRIQEAAEVLVN--MIDSGISPDCISYSTII 719

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
              CR G+ ++ I++   M   G  P+ V  + +I G C  G L +A ++  ++  R + 
Sbjct: 720 YEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGV- 778

Query: 586 TEANTIVYDEIL 597
            + N   Y+ ++
Sbjct: 779 -KPNRATYNSLI 789



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 143/363 (39%), Gaps = 43/363 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++     + ++M  N  KP+V  YT++I     E  L    R++ EM    +  +   +
Sbjct: 439 GKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTF 498

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GLC   R+   ++LF EM E  ++ +   Y VLIEG   EG   +A +LL ++V+
Sbjct: 499 TALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVE 558

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLF--------EVTVQDDLAPDFSTVNPLLVCC 353
            G   D   Y  +I GLC   +  +A +          ++   +   P+  T   L+   
Sbjct: 559 KGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGL 618

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
            ++G MD    L  +M         +    F   +  E  I  A+ + + L     ++  
Sbjct: 619 CKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTV 678

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC------ 467
            YNIL+    ++G +++A  +   M    +  + +S+S  I  +   GD+ EA       
Sbjct: 679 TYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESM 738

Query: 468 -----------------------------ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
                                        E  + ++     P+ A YN L  G C +  +
Sbjct: 739 LNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSV 798

Query: 499 DAA 501
            + 
Sbjct: 799 SST 801



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 51/113 (45%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI E  E+L  M  +   PD  +Y+ +I       +L   +++WE M    V  D +AY
Sbjct: 691 GRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAY 750

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
             LI G C  G + +  EL  +M   G+  +RA Y  LI G      V    D
Sbjct: 751 NFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTAD 803



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 1/156 (0%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           + + S+G I + +++ + +        V  Y  +IR       +     V   M    + 
Sbjct: 651 DYLTSEGNIEKAIQLHDVLLEGFLANTV-TYNILIRGFCKLGRIQEAAEVLVNMIDSGIS 709

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            D ++Y T+I   C+ G +    +L+  M   G+  D   Y  LI G    G++ KA +L
Sbjct: 710 PDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFEL 769

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
             D++  G + +   YNS+I G C +         F
Sbjct: 770 RDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTADYF 805


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 133/562 (23%), Positives = 251/562 (44%), Gaps = 50/562 (8%)

Query: 74  SDPKTFQLQRHL--SPIARFI---TDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVL-K 127
           ++P   + QR    SP ++F+   TD  R NQ  W   +       + + P  V +VL +
Sbjct: 11  TNPNFLRKQRTFCASPDSQFVACLTDIVRGNQ-SWRVALNNSFIS-QTLKPHHVEKVLIQ 68

Query: 128 VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV----------PE- 176
             ++  LA +FF++ G  K + H+  S+  L + L ++NL+  A  +          PE 
Sbjct: 69  TLDDSRLALRFFNFLGLHKNFDHSTTSFCILIHALVQSNLYWPASSLLQTLLLRGLNPEG 128

Query: 177 ----LMDSQGR--------IAEMLEILEKMRRNL-----------CK--PDVFAYTAMIR 211
                +DS  +           +++   + RR L           C   P +   + ++ 
Sbjct: 129 LFESFLDSYRKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLN 188

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
            L   R     L +++E+    +  DV  Y  ++  LC+    +R  E+   M+ +G  +
Sbjct: 189 GLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDL 248

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
             A Y V I GL    +V +A ++   L   G RAD+G Y +++ GLC+V++F+   ++ 
Sbjct: 249 SVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMM 308

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VG 389
              ++    P  + V+ L+    + G + + F L+ +++  KF VA  L  +   +  + 
Sbjct: 309 NEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVK--KFGVAPSLFVYNALINSMC 366

Query: 390 KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           K+ ++  A  +F  +  KG + +   Y+IL+ +  + G++  AL+  GKM  + ++    
Sbjct: 367 KDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVY 426

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
            +S  I  H + G +  A    +++I     P+V  Y  L  G CK GE+  A  L  + 
Sbjct: 427 PYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEM 486

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
            G   S P  + +   I  +C +    +  ++  EM +    PNEV  + +I G CK G 
Sbjct: 487 TGKGIS-PNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGN 545

Query: 569 LEEARKVFTNLRERKLLTEANT 590
              A ++   + E+ L+ +  T
Sbjct: 546 TVRAFELLDEMVEKGLVPDTYT 567



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 186/393 (47%), Gaps = 18/393 (4%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWE--EMKKDL----VEADVMAYV 242
           E++ +M  + C   V  Y   IR L   +      RVWE  E+K  L    + ADV  Y 
Sbjct: 236 EVIGRMESSGCDLSVATYNVFIRGLCKNQ------RVWEAVEIKNLLSYKGLRADVGTYC 289

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TL++GLCK      G E+  EM E G +   A    L++GL  +G +G A DL+  +   
Sbjct: 290 TLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKF 349

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G    L +YN++I  +C+  + D+A  LF       L P+  T + L+    + G++D  
Sbjct: 350 GVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVA 409

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILM 419
              L +M ++   + A +  +   + G  K  ++  A  +F+E+   G   +V IY  L+
Sbjct: 410 LHFLGKMTEV--GIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLI 467

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               + GE+  A  L+ +M G  +  N+ +F+  I     +  + EA +   +++E + +
Sbjct: 468 SGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVI 527

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+   YN L +G CK G    A  L+ D +      P  + Y   I  +C +G   +  E
Sbjct: 528 PNEVTYNVLIEGHCKEGNTVRAFELL-DEMVEKGLVPDTYTYRPLISGLCSTGRVSEARE 586

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
            +N++  E    NE+  SA++ G CK G L++A
Sbjct: 587 FMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDA 619



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 195/425 (45%), Gaps = 44/425 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++     + ++M  N  KP+V  YT++I     E  L    R++ EM    +  +   +
Sbjct: 439 GKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTF 498

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GLC   R+   ++LF EM E  ++ +   Y VLIEG   EG   +A +LL ++V+
Sbjct: 499 TALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVE 558

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   Y  +I GLC   +  +A +       +DL  +   +N +            
Sbjct: 559 KGLVPDTYTYRPLISGLCSTGRVSEAREFM-----NDLQGEQQKLNEMC----------- 602

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
                                F   L G  KE R+  ALD   E+ G+G +  +  Y++L
Sbjct: 603 ---------------------FSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVL 641

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  +L   + +  + L  +M    L  +++ ++  I  + ++G++  A    + ++    
Sbjct: 642 IYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGC 701

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           +P+V  Y  L  GLCKIG +D A +L R+ L +  S P +  YA  + ++   G  EK I
Sbjct: 702 LPNVVTYTALINGLCKIGLMDKAELLCREMLAS-NSLPNQNTYACFLDYLTSEGNIEKAI 760

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           + L+++  EG   N V  + +I G CK G ++EA +V  N+ +  +    + I Y  I+ 
Sbjct: 761 Q-LHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGI--SPDCISYSTIIY 817

Query: 599 EHMKK 603
           E+ ++
Sbjct: 818 EYCRR 822



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 107/470 (22%), Positives = 202/470 (42%), Gaps = 31/470 (6%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQ----------------VPELMDS---QGRIAE 186
           KG + +  +Y  L   L +   F A ++                V  L+D    +G I  
Sbjct: 279 KGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGS 338

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM-KKDLVEADVMAYVTLI 245
             +++ K+++    P +F Y A+I  +  +  LD    ++  M  K L   DV  Y  LI
Sbjct: 339 AFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDV-TYSILI 397

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              CK G++        +M E GI      Y  LI G    GK+  A  L  +++ +G +
Sbjct: 398 DSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLK 457

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            ++ IY S+I G C+  +   A++L+       ++P+  T   L+       RM    KL
Sbjct: 458 PNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKL 517

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IYNILMG 420
             +M  ++++V  +   +   + G  KE   + A ++ +E+  KG   VP    Y  L+ 
Sbjct: 518 FGEM--VEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGL--VPDTYTYRPLIS 573

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L   G V +A      ++G   ++N + FS  +  + + G + +A +   +++      
Sbjct: 574 GLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAM 633

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            +  Y+ L  G+ +  +  + + L++  + +    P    Y   I    ++G  +    +
Sbjct: 634 DLVCYSVLIYGILRQQDRRSIIDLLKQ-MHDQGLRPDNVLYTTMIDANAKAGNLKMAFGL 692

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            + M  EGC PN V  +A+I+G+CK G +++A  +   +     L   NT
Sbjct: 693 WDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNT 742



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 146/349 (41%), Gaps = 1/349 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G      E+L++M      PD + Y  +I  L +   +        +++ +  + + M 
Sbjct: 543 EGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMC 602

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  L+ G CK GR+    +  REM   G+ +D   Y VLI G++ +       DLLK + 
Sbjct: 603 FSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMH 662

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D G R D  +Y ++I    +      A+ L+++ V +   P+  T   L+    ++G MD
Sbjct: 663 DQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMD 722

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
               L  +M         +    F   +  E  I  A+ + + L     ++   YNIL+ 
Sbjct: 723 KAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIR 782

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              ++G +++A  +   M    +  + +S+S  I  +   GD+ EA +    ++     P
Sbjct: 783 GFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNP 842

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
              AYN L  G C  GE+  A  L RD +      P    Y   I   C
Sbjct: 843 DTVAYNFLIYGCCVTGELTKAFEL-RDDMMRRGVKPNRATYNSLIHGTC 890



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 51/113 (45%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI E  E+L  M  +   PD  +Y+ +I       +L   +++WE M    V  D +AY
Sbjct: 788 GRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAY 847

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
             LI G C  G + +  EL  +M   G+  +RA Y  LI G      V    D
Sbjct: 848 NFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTAD 900



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 1/144 (0%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           + + S+G I + +++ + +        V  Y  +IR       +     V   M    + 
Sbjct: 748 DYLTSEGNIEKAIQLHDVLLEGFLANTV-TYNILIRGFCKLGRIQEAAEVLVNMIDSGIS 806

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            D ++Y T+I   C+ G +    +L+  M   G+  D   Y  LI G    G++ KA +L
Sbjct: 807 PDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFEL 866

Query: 296 LKDLVDSGYRADLGIYNSIIGGLC 319
             D++  G + +   YNS+I G C
Sbjct: 867 RDDMMRRGVKPNRATYNSLIHGTC 890


>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Glycine max]
          Length = 1078

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/479 (25%), Positives = 211/479 (44%), Gaps = 29/479 (6%)

Query: 153 ASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEMLEILEK 193
            +YN L     +   ++AA Q+ + M S+G                   R A+   +L++
Sbjct: 211 VTYNTLLNWYCKKGRYKAASQLIDCMASKGIGVDVCTYNVFIDNLCRDSRSAKGYLLLKR 270

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           MRRN+  P+   Y  +I     E  ++   +V++EM    +  + + Y TLI G C  G 
Sbjct: 271 MRRNMVYPNEITYNTLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGN 330

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           +     L   M  +G+  +   YG L+ GL    + G    +L+ +   G R     Y +
Sbjct: 331 IGEALRLMDVMVSHGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSHISYTA 390

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           +I GLC+    ++A +L +  ++  + PD  T + L+     +G+++N  +++ +M K  
Sbjct: 391 MIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKMYKTG 450

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIY-NILMGALLEIGEVKKAL 432
                 L     +   K   +  AL+ +  +   G+ +     N+L+      G++++A 
Sbjct: 451 LVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNVLVATFCRYGKLEEAE 510

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
           Y    M  + L+ NS++F   I  +  SGD L+A    +K+      PS+  Y  L KGL
Sbjct: 511 YFMNHMSRMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKMNSFGHFPSLFTYGGLLKGL 570

Query: 493 CKIGEIDAAMMLVR--DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           C  G I+ A+       C+ N A     F   LT    CRSG     I ++NEM      
Sbjct: 571 CIGGHINEALKFFHRLRCIPN-AVDNVIFNTKLT--STCRSGNLSDAIALINEMVTNDFL 627

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI---LIEHMKKKTA 606
           P+    + +I+G+CK G +  A  +     E+ LL+  N  VY  +   L++H   + A
Sbjct: 628 PDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLS-PNPAVYTSLVDGLLKHGHARAA 685



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/445 (23%), Positives = 194/445 (43%), Gaps = 14/445 (3%)

Query: 168  FRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWE 227
            F   + +  L      +A +L   + + + L  P+   YT+++  L    +  A L ++E
Sbjct: 631  FTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLSPNPAVYTSLVDGLLKHGHARAALYIFE 690

Query: 228  EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
            EM    VE D +A+  +I    + G+  + +++   MK   +  + A Y +L+ G     
Sbjct: 691  EMLNKDVEPDTVAFNVIIDQYSRKGKTSKVNDILSTMKSKNLCFNLATYNILLHGYAKRH 750

Query: 288  KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
             + +   L KD++  G+  D   ++S+I G C+ K FD A K+      +    D  T N
Sbjct: 751  AMARCFMLYKDMIRHGFLPDKFSWHSLILGYCQSKSFDVAIKILRWITLEGHVIDRFTFN 810

Query: 348  PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELK 405
             L+    E   M   F+L+ QM   +F V  +++ +     G  +      A  V + L 
Sbjct: 811  MLITKFCERNEMKKAFELVKQMN--QFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVLL 868

Query: 406  GKGYSSVPI---YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
              G  SVP    Y  L+  +  +G +K A+ L  +M+ L +  ++++ S  ++    S  
Sbjct: 869  ESG--SVPTNKQYITLINGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKK 926

Query: 463  ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
            I  A    + ++EM  +P+VA +  L    CK   +  A+ L R  + +         Y 
Sbjct: 927  IENAIWVLDLMLEMQIIPTVATFTTLMHVYCKEANVAKALEL-RSIMEHCHVKLDVVAYN 985

Query: 523  LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
            + I  +C +G+ E   ++  EM Q    PN  I   +I   C      E+ K+  ++++R
Sbjct: 986  VLISGLCANGDIEAAFKLYEEMKQRDLWPNTSIYIVLIDSFCAGNYQIESEKLLRDIQDR 1045

Query: 583  KLLTEANTIVY----DEILIEHMKK 603
            +L+       Y    D  ++ HM K
Sbjct: 1046 ELMRLNQQFCYSSRCDIAVVLHMNK 1070



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 171/406 (42%), Gaps = 1/406 (0%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           + G I E L +++ M  +  +P+   Y A++  L           + E M+   V    +
Sbjct: 327 TTGNIGEALRLMDVMVSHGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSHI 386

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y  +I GLCK G +    +L  +M +  +  D   + VLI G    GK+  A +++  +
Sbjct: 387 SYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKM 446

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
             +G   +  +Y+++I   C++    +A   + V        D  T N L+      G++
Sbjct: 447 YKTGLVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNVLVATFCRYGKL 506

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNIL 418
           +     +  M ++     +          G     + A  VF+++   G + S+  Y  L
Sbjct: 507 EEAEYFMNHMSRMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKMNSFGHFPSLFTYGGL 566

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L   G + +AL  F ++R +   V+++ F+  +     SG++ +A    N+++    
Sbjct: 567 LKGLCIGGHINEALKFFHRLRCIPNAVDNVIFNTKLTSTCRSGNLSDAIALINEMVTNDF 626

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           +P    Y  L  GLCK G+I AA++L    +      P    Y   +  + + G A   +
Sbjct: 627 LPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLSPNPAVYTSLVDGLLKHGHARAAL 686

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
            +  EM  +   P+ V  + II    + G   +   + + ++ + L
Sbjct: 687 YIFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVNDILSTMKSKNL 732



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 177/401 (44%), Gaps = 10/401 (2%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P V+    ++  L  E+ +D     ++ M    +  DV  +  L+  LC+ G+      L
Sbjct: 138 PSVYTCNMVLGSLVKEQKVDMFWSFFKGMLAKGICPDVATFNILLNALCERGKFKNAGFL 197

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
            R+M+E+G+      Y  L+     +G+   A  L+  +   G   D+  YN  I  LCR
Sbjct: 198 LRKMEESGVYPTAVTYNTLLNWYCKKGRYKAASQLIDCMASKGIGVDVCTYNVFIDNLCR 257

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             +  K Y L +   ++ + P+  T N L+      G+++   K+  +M    F++  + 
Sbjct: 258 DSRSAKGYLLLKRMRRNMVYPNEITYNTLISGFVREGKIEVATKVFDEMS--LFNLLPNS 315

Query: 381 EKFFEFLVGK--EERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGK 437
             +   + G      I  AL + + +   G     + Y  L+  L +  E      +  +
Sbjct: 316 ITYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNEVTYGALLNGLYKNAEFGMVSSILER 375

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           MR   + V+ +S++  I    ++G + EA +  + ++++S  P V  ++ L  G  ++G+
Sbjct: 376 MRMGGVRVSHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGK 435

Query: 498 IDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           I+ A  ++  C +      P    Y+  I + C+ G  ++ +     M   G   +   C
Sbjct: 436 INNAKEIM--CKMYKTGLVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTC 493

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           + +++  C++G LEEA + F N   R  L + N++ +D I+
Sbjct: 494 NVLVATFCRYGKLEEA-EYFMNHMSRMGL-DPNSVTFDCII 532



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/408 (22%), Positives = 163/408 (39%), Gaps = 16/408 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+      +L KM  +   P    Y  ++     +    A  ++ + M    +  DV  
Sbjct: 188 RGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKKGRYKAASQLIDCMASKGIGVDVCT 247

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y   I  LC+  R  +G+ L + M+ N +  +   Y  LI G V EGK+  A  +  ++ 
Sbjct: 248 YNVFIDNLCRDSRSAKGYLLLKRMRRNMVYPNEITYNTLISGFVREGKIEVATKVFDEMS 307

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC---AEMG 357
                 +   YN++I G C      +A +L +V V   L P+  T   LL      AE G
Sbjct: 308 LFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNEVTYGALLNGLYKNAEFG 367

Query: 358 RMDNFFKLL----AQMEKLKFSVAAD-LEKFFEFLVGKEERIMMALDVFEELKGKGYSSV 412
            + +  + +     ++  + ++   D L K      G  E  +  LD  + LK      V
Sbjct: 368 MVSSILERMRMGGVRVSHISYTAMIDGLCK-----NGMLEEAVQLLD--DMLKVSVNPDV 420

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             +++L+     +G++  A  +  KM    L  N + +S  I  + + G + EA   +  
Sbjct: 421 VTFSVLINGFFRVGKINNAKEIMCKMYKTGLVPNGILYSTLIYNYCKMGYLKEALNAYAV 480

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           +     V      N L    C+ G+++ A   +   +  +   P    +   I     SG
Sbjct: 481 MNHSGHVADHFTCNVLVATFCRYGKLEEAEYFMNH-MSRMGLDPNSVTFDCIINGYGNSG 539

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           +A K   V ++M   G  P+      ++ G+C  G + EA K F  LR
Sbjct: 540 DALKAFSVFDKMNSFGHFPSLFTYGGLLKGLCIGGHINEALKFFHRLR 587



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/480 (21%), Positives = 191/480 (39%), Gaps = 57/480 (11%)

Query: 134 LASKFFHWAGKQKGYKHNFASY--NALAYCLSRNNLFRAAD-------QVPELMDSQ-GR 183
           LA KF +W  KQ   + N  ++      + L R  ++  A        Q+P  ++S  G 
Sbjct: 34  LALKFLNWVIKQPNLELNHVTHIICTTTHILVRARMYNFAKTTLKHLLQLPIGLNSVFGA 93

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + E   I        C  +   +  +IRV    R +   ++ +  M    +   V     
Sbjct: 94  LMETYPI--------CNSNPAVFDLLIRVCLRNRMVGDAVQTFYLMGFRGLNPSVYTCNM 145

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           ++  L K  +V      F+ M   GI  D A + +L+  L   GK   A  LL+ + +SG
Sbjct: 146 VLGSLVKEQKVDMFWSFFKGMLAKGICPDVATFNILLNALCERGKFKNAGFLLRKMEESG 205

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
                  YN+++   C+  ++  A +L +      +  D  T N  +       R    +
Sbjct: 206 VYPTAVTYNTLLNWYCKKGRYKAASQLIDCMASKGIGVDVCTYNVFIDNLCRDSRSAKGY 265

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALL 423
            LL +M                                   +   Y +   YN L+   +
Sbjct: 266 LLLKRMR----------------------------------RNMVYPNEITYNTLISGFV 291

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
             G+++ A  +F +M   NL  NS++++  I  H  +G+I EA    + ++     P+  
Sbjct: 292 REGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNEV 351

Query: 484 AYNCLTKGLCKIGEID-AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
            Y  L  GL K  E    + +L R  +G V    +   Y   I  +C++G  E+ +++L+
Sbjct: 352 TYGALLNGLYKNAEFGMVSSILERMRMGGVR--VSHISYTAMIDGLCKNGMLEEAVQLLD 409

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
           +M +    P+ V  S +I+G  + G +  A+++   + +  L+   N I+Y  ++  + K
Sbjct: 410 DMLKVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKMYKTGLV--PNGILYSTLIYNYCK 467


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 190/433 (43%), Gaps = 50/433 (11%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ + L  L KM      PDV+ YTA+I  L  E  L    +  EEM    +  +V+ Y 
Sbjct: 26  RLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYT 85

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI GLCKGGRV     L  +M++  +      Y  LI GL    +  +A DLL+++V S
Sbjct: 86  VLIDGLCKGGRVDEAVALLSKMRKKCVPT-AVTYNSLISGLCKAERASEAYDLLEEMVYS 144

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF------------------- 343
           G   D+  Y ++I G C+ K+ D A ++FE  V     PD                    
Sbjct: 145 GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEA 204

Query: 344 -----------------STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
                             T N L+     MG+MD    LL +M +   S   D+  +   
Sbjct: 205 IDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSS--PDVVTYTTL 262

Query: 387 LVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           + G  K  R+  A D+  ++  KG +  V  +  LM  L     +  A+++ G+MR  + 
Sbjct: 263 MNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSC 322

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKII--EMSQVPSVAAYNCLTKGLCKIGEIDAA 501
                +++  +  +  +  + EA     K +  EM   P+V ++N + +GLCK+     A
Sbjct: 323 SPTVYTYNTILDGYCRANQLEEA----RKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEA 378

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE-GCPPNEVICSAII 560
           M LV +      + P    Y   I  +CR  + ++   V  +M +E GC PN +  S +I
Sbjct: 379 MELVEEARRRRCN-PDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLI 437

Query: 561 SGMCKHGTLEEAR 573
           +G+C  G L+ AR
Sbjct: 438 TGLCNAGMLDRAR 450



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/461 (24%), Positives = 199/461 (43%), Gaps = 32/461 (6%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-------------------GRIA 185
            KG+  +  +Y A+ + L   N    A +  E M ++                   GR+ 
Sbjct: 39  SKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVD 98

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E + +L KMR+  C P    Y ++I  L           + EEM       D+  Y TLI
Sbjct: 99  EAVALLSKMRKK-CVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLI 157

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY- 304
            G CK  +      +F ++   G   D   Y  LI+GL  EG++ +A DL   ++ SG  
Sbjct: 158 TGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSC 217

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             +   YNS+I G CR+ + D+A  L E   +   +PD  T   L+    ++ R+D+ + 
Sbjct: 218 MPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYD 277

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
           LL QM +   +   D+  F   + G  +E R+  A+ +  E++ K  S +V  YN ++  
Sbjct: 278 LLNQMTRKGLT--PDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDG 335

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
                ++++A      +  ++   N +SF+I I+   +     EA E   +       P 
Sbjct: 336 YCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPD 393

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V  Y  +  GLC+  ++D A  + R  L      P    Y+  I  +C +G    +++  
Sbjct: 394 VVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAG----MLDRA 449

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
               ++GC PN    + +I    K    E+AR++  ++ +R
Sbjct: 450 RGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 173/376 (46%), Gaps = 24/376 (6%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R +E  ++LE+M  + C PD+F YT +I      +  D  LRV+E++       DV+ Y 
Sbjct: 130 RASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYS 189

Query: 243 TLIMGLCKGGRVVRGHELF-REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            LI GLCK GR+    +LF R +K    + +   Y  LI G    GK+ +A +LL+ + +
Sbjct: 190 CLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAE 249

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G   D+  Y +++ G C++ + D AY L     +  L PD  T   L+       R+ +
Sbjct: 250 TGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSD 309

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG-------KEERIMMALDVFEELKGKGYSSVPI 414
              +L +M +   S +  +  +   L G       +E R  M     EE+      +V  
Sbjct: 310 AVHILGEMRRK--SCSPTVYTYNTILDGYCRANQLEEARKFM----LEEMDCP--PNVVS 361

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           +NI++  L ++    +A+ L  + R      + + ++  I        + EAC  + K++
Sbjct: 362 FNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKML 421

Query: 475 EM-SQVPSVAAYNCLTKGLCKIGEIDAAMMLV-RDCLGNVASGPTEFKYALTILHVCRSG 532
           E    +P+   Y+ L  GLC  G +D A   + + C+ N+ +      Y L I    ++ 
Sbjct: 422 EEPGCLPNSITYSTLITGLCNAGMLDRARGYIEKGCVPNIGT------YNLLIDAFRKAN 475

Query: 533 EAEKIIEVLNEMTQEG 548
             E   E+L++M Q G
Sbjct: 476 RDEDARELLDDMVQRG 491



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 127/329 (38%), Gaps = 41/329 (12%)

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           N    D   Y  LI+GL    ++ +A   L  +V  G+  D+  Y ++I  LC   +  +
Sbjct: 5   NSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHE 64

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A K  E     +L P+  T   L+    + GR+D    LL++M K     A         
Sbjct: 65  ARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISG 124

Query: 387 LVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM--RGLNL 443
           L  K ER   A D+ EE+   G    +  Y  L+    +  +   AL +F ++  RG   
Sbjct: 125 LC-KAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR- 182

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
                                               P V  Y+CL  GLCK G +  A+ 
Sbjct: 183 ------------------------------------PDVVTYSCLIDGLCKEGRLKEAID 206

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L    + + +  P    Y   I   CR G+ ++ + +L  M + G  P+ V  + +++G 
Sbjct: 207 LFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGF 266

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIV 592
           CK   L++A  +   +  + L  +  T  
Sbjct: 267 CKLARLDDAYDLLNQMTRKGLTPDVVTFT 295



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 5/123 (4%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMAY 241
           R +E +E++E+ RR  C PDV  YT +I  L  E+ +D   RV+ +M ++     + + Y
Sbjct: 374 RSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITY 433

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI GLC  G + R     R   E G + +   Y +LI+      +   A +LL D+V 
Sbjct: 434 STLITGLCNAGMLDRA----RGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQ 489

Query: 302 SGY 304
            G+
Sbjct: 490 RGF 492


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/476 (22%), Positives = 211/476 (44%), Gaps = 24/476 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           ++ G+  N  SY  L + L ++   R A +V   M S+G                    I
Sbjct: 184 RKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDI 243

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
             ++ +L++M     +P+++ +T  IR+L     +D    + + M       DV+ Y  L
Sbjct: 244 ETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVL 303

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC  G++    ELF +MK +    DR  Y  L++     G +    +   ++   GY
Sbjct: 304 IDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGY 363

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  +  +I  LC+V + D+A+   +V  +  +AP+  T N L+     + R+D   +
Sbjct: 364 LPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALE 423

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
           L   ME L     A     F    GK      A+  FE++K  G   ++   N  + +L 
Sbjct: 424 LFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLA 483

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           E G +++A   F  ++   L  ++++++I ++C+ ++G + +A +  +++ E    P V 
Sbjct: 484 EQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVV 543

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
             N L   L K   +D A  + +  +  +   PT   Y   +  + + G  ++   +   
Sbjct: 544 IINSLIDTLYKADRVDEAWKMFQR-MKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKG 602

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIVYDEI 596
           M  + CPPN +  + ++  +CK+G ++ A K+   + E     +    NT++Y  I
Sbjct: 603 MIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLI 658



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 123/522 (23%), Positives = 215/522 (41%), Gaps = 62/522 (11%)

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ 181
           V  VLK  ++P  A  FF+   +     H   + N                 V E++ + 
Sbjct: 92  VYRVLKSISDPNQAFSFFNSVAEMPRVIHTTETCN----------------YVLEMLRAH 135

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
            R+ +M+ +   M++ + K  +  Y  + +VL     L       E+M+K     +  +Y
Sbjct: 136 RRVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSY 195

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
           + LI  L K G      +++R M   GI      Y  L+  L     +     LL+++  
Sbjct: 196 IGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMES 255

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G R ++  +   I  L R  + D+AY + +        PD  T   L+      G+++N
Sbjct: 256 LGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNN 315

Query: 362 ----FFKLLAQMEKL----------KFSVAADLEKFFEFL-------------------- 387
               F K+ A   K           KFS   DL+   EF                     
Sbjct: 316 AKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILID 375

Query: 388 ----VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
               VGK +     LDV   +K +G + ++  YN L+  LL +  + +AL LF  M  L 
Sbjct: 376 ALCKVGKVDEAFGTLDV---MKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLG 432

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           LE  + ++ + I  + +SG+  +A +   K+     VP++ A N     L + G ++ A 
Sbjct: 433 LETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAK 492

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
               + L      P    Y + +    ++G  +  I++L+EM + GC P  VI +++I  
Sbjct: 493 EFF-NGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDT 551

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           + K   ++EA K+F  ++E KL   A T+V    L+  + K+
Sbjct: 552 LYKADRVDEAWKMFQRMKEMKL---APTVVTYNTLLAGLGKE 590



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 189/406 (46%), Gaps = 13/406 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QGR+ E  E    +++    PD   Y  ++R       +D  +++  EM+++  + +V+ 
Sbjct: 485 QGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVI 544

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             +LI  L K  RV    ++F+ MKE  +      Y  L+ GL  EG+V +A  L K ++
Sbjct: 545 INSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMI 604

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 +   +N+++  LC+  + D A K+     + +  PD  T N ++    +  R++
Sbjct: 605 ADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVN 664

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK--GYSSVPIYNIL 418
             F L  QM+K+ +     L      ++ K+ RI  A  V +E       ++    +  L
Sbjct: 665 YAFWLFHQMKKVIYPDYVTLCTLLPGVI-KDGRIEDAFRVAKEFVHHVGDHADGSFWEDL 723

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA-IQCHVESGDILEACECHNKIIEMS 477
           MG +L   E+ +++ LF +    N      S  I  ++   + G   +A + +N  ++++
Sbjct: 724 MGGILIEAEIGQSI-LFAESLVCNTICEDDSVLIPLVKFLCKHG---KAVDAYNVFLKLT 779

Query: 478 Q----VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           +     PS+ AYN L  GL K    + A  L    + N    P  F Y L +  + +SG+
Sbjct: 780 KSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYK-MKNAGCTPDVFTYNLFLDALGKSGK 838

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            +++ ++  EM   GC PN +  + +I G+ K  +L++A  ++ +L
Sbjct: 839 IKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDL 884



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 114/481 (23%), Positives = 209/481 (43%), Gaps = 59/481 (12%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKM 194
           A +FF+   K+ G   +  +YN L  C  +                 GR+ + +++L +M
Sbjct: 491 AKEFFNGL-KKCGLAPDAITYNILMRCYGK----------------AGRVDDAIKLLSEM 533

Query: 195 RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
             N C P+V    ++I  L     +D   ++++ MK+  +   V+ Y TL+ GL K GRV
Sbjct: 534 EENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRV 593

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
                LF+ M  +    +   +  L++ L   G+V  A  +L  + +     D+  YN++
Sbjct: 594 QEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTV 653

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM----- 369
           I GL +  + + A+ LF   ++  + PD+ T+  LL    + GR+++ F++  +      
Sbjct: 654 IYGLIKENRVNYAFWLFH-QMKKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVG 712

Query: 370 --------EKLKFSVAADLE-----KFFEFLVG------------------KEERIMMAL 398
                   E L   +  + E      F E LV                   K  + + A 
Sbjct: 713 DHADGSFWEDLMGGILIEAEIGQSILFAESLVCNTICEDDSVLIPLVKFLCKHGKAVDAY 772

Query: 399 DVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           +VF +L  K +   P    YN L+  LL+    + A  LF KM+      +  ++++ + 
Sbjct: 773 NVFLKLT-KSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLD 831

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
              +SG I E  + + +++     P+   +N +  GL K   +D A+ L  D +    S 
Sbjct: 832 ALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFS- 890

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           PT + Y   I  + + G  E+  +   EM   GC PN  + + +++G  K G +E A ++
Sbjct: 891 PTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACEL 950

Query: 576 F 576
           F
Sbjct: 951 F 951



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 107/481 (22%), Positives = 212/481 (44%), Gaps = 46/481 (9%)

Query: 178  MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
            +  +GR+ E   + + M  + C P+  ++  ++  L     +D  L++   M +     D
Sbjct: 587  LGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPD 646

Query: 238  VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
            V+ Y T+I GL K  RV     LF +MK+  I  D      L+ G++ +G++  A  + K
Sbjct: 647  VLTYNTVIYGLIKENRVNYAFWLFHQMKKV-IYPDYVTLCTLLPGVIKDGRIEDAFRVAK 705

Query: 298  DLVDS-GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            + V   G  AD   +  ++GG+    +  ++    E  V + +  D S + PL+    + 
Sbjct: 706  EFVHHVGDHADGSFWEDLMGGILIEAEIGQSILFAESLVCNTICEDDSVLIPLVKFLCKH 765

Query: 357  GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVP 413
            G+  + + +  ++ K  F +   LE +   + G  K     MA  +F ++K  G +  V 
Sbjct: 766  GKAVDAYNVFLKLTK-SFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVF 824

Query: 414  IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
             YN+ + AL + G++K+   L+ +M     + N+++ +I I   V+S  + +A + +  +
Sbjct: 825  TYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDL 884

Query: 474  IEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCL----------------GNV 512
            +     P+   Y  L  GL K+G ++ A      ML   C+                G+V
Sbjct: 885  MSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDV 944

Query: 513  ASGPTEFK-------------YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
             +    F+             Y++ +  +C  G+ +  +    E+   G  P+ V  + +
Sbjct: 945  ETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLM 1004

Query: 560  ISGMCKHGTLEEARKVFTNLRERKL---LTEANTIVYD---EILIEHMKKKTADLVLSGL 613
            I+G+ +   +EEA  +F  +R R +   L   N ++ +     ++E   K   +L L GL
Sbjct: 1005 INGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGL 1064

Query: 614  K 614
            +
Sbjct: 1065 E 1065



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 142/321 (44%), Gaps = 42/321 (13%)

Query: 166  NLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV 225
            NLF  A      +   G+I E+ ++ E+M    CKP+   +  +I  L    +LD  + +
Sbjct: 827  NLFLDA------LGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDL 880

Query: 226  WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285
            + ++           Y  LI GL K GR+    + F EM + G + +  +Y +L+ G   
Sbjct: 881  YYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGK 940

Query: 286  EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
            +G V  AC+L + +V  G R DL  Y+ ++  LC V + D A   FE      L PD   
Sbjct: 941  QGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPD--- 997

Query: 346  VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELK 405
                LVC          + L+                     +G+ +R+  AL +F+E++
Sbjct: 998  ----LVC----------YNLMING------------------LGRSQRVEEALSLFDEMR 1025

Query: 406  GKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
             +G +  +  YN L+  L   G V++A  ++ +++   LE N  +++  I+ H  SG+  
Sbjct: 1026 NRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPD 1085

Query: 465  EACECHNKIIEMSQVPSVAAY 485
             A   + K++     P+   +
Sbjct: 1086 RAYAVYKKMMVGGCRPNTGTF 1106



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 153/346 (44%), Gaps = 17/346 (4%)

Query: 181  QGRIAEMLEILEKMRRNLC-KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
             G+  +   +  K+ ++ C  P + AY ++I  L   R  +    ++ +MK      DV 
Sbjct: 765  HGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVF 824

Query: 240  AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
             Y   +  L K G++    +L+ EM   G   +   + ++I GLV    + KA DL  DL
Sbjct: 825  TYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDL 884

Query: 300  VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            +   +      Y  +I GL ++ + ++A + FE  +     P+    N L+    + G +
Sbjct: 885  MSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDV 944

Query: 360  DNFFKLLAQMEKLKFSVAADLEKFFEF-----LVGKEERIMMALDVFEELKGKGYS-SVP 413
            +   +L  +M  +K  +  DL+ +        +VGK +    AL  FEELK  G    + 
Sbjct: 945  ETACELFRRM--VKEGIRPDLKSYSIMVDCLCMVGKVDD---ALHYFEELKLSGLDPDLV 999

Query: 414  IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
             YN+++  L     V++AL LF +MR   +  +  +++  I     +G + EA + + ++
Sbjct: 1000 CYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEEL 1059

Query: 474  IEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVAS 514
                  P+V  YN L +G    G  D A      M+V  C  N  +
Sbjct: 1060 QLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGT 1105



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 135/314 (42%), Gaps = 2/314 (0%)

Query: 240  AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            AY +LI GL K         LF +MK  G   D   Y + ++ L   GK+ +  DL +++
Sbjct: 790  AYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEM 849

Query: 300  VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            +  G + +   +N +I GL +    DKA  L+   +  D +P   T  PL+    ++GR+
Sbjct: 850  LFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRL 909

Query: 360  DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
            +   +   +M          L        GK+  +  A ++F  +  +G    +  Y+I+
Sbjct: 910  EEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIM 969

Query: 419  MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
            +  L  +G+V  AL+ F +++   L+ + + +++ I     S  + EA    +++     
Sbjct: 970  VDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGI 1029

Query: 479  VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
             P +  YN L   L   G ++ A  +  + L      P  F Y   I     SG  ++  
Sbjct: 1030 TPDLYTYNALILNLGIAGMVEEAGKMYEE-LQLKGLEPNVFTYNALIRGHSMSGNPDRAY 1088

Query: 539  EVLNEMTQEGCPPN 552
             V  +M   GC PN
Sbjct: 1089 AVYKKMMVGGCRPN 1102


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/470 (22%), Positives = 208/470 (44%), Gaps = 26/470 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           + KG + +  +YN L                   M ++G + E L IL  +  + CKPD 
Sbjct: 224 RAKGCEPDIVTYNVLI----------------NAMCNEGDVDEALNILSDLPSHGCKPDA 267

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT +++ L           ++ EM  +    D + + T++  LC+ G V R  ++   
Sbjct: 268 VTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDH 327

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M E+G + D   Y  +++GL   G+V  A +LL  L   G + D   Y +++ GLC ++Q
Sbjct: 328 MSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQ 387

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           ++ A +L    V  D  PD  T N ++    + G +D   K++ QM   +     D+  +
Sbjct: 388 WEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMS--ENGCNPDIVTY 445

Query: 384 FEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
              + G   E  I  A+++   L+  G    +  +N L+  L  +   + A  L   M  
Sbjct: 446 NSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMH 505

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
            +   ++ +F+  I    + G +L+A E    + E   +P+ + YN +   L K G+   
Sbjct: 506 SDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQE 565

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A+ L+    G     P    Y   I ++ ++G+ E+ +++L  M   G  P+ +   ++ 
Sbjct: 566 ALKLLS---GMTNGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLA 622

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVL 610
            G+C+    + A ++   L++  L  +A    Y++IL+   +    D+ +
Sbjct: 623 YGICREDGTDRAIRMLCRLQDMGLSPDAT--FYNDILLGFCQNWRTDIAI 670



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 179/399 (44%), Gaps = 39/399 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + +E+L +++   CKPD  AYT +++ L +    +    +  EM       D + +
Sbjct: 351 GRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTF 410

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T+I  LC+ G V R  ++  +M ENG   D   Y  +I+GL  E  +  A +LL +L  
Sbjct: 411 NTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQS 470

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + D+  +N+++ GLC V +++ A +L    +  D  PD +T N ++    + G    
Sbjct: 471 YGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGL--- 527

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
              LL  +E LK                     +MA       +     +   YNI++ A
Sbjct: 528 ---LLQAIETLK---------------------IMA-------ENGCIPNQSTYNIVVDA 556

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           LL+ G+ ++AL L   M   N   + ++++  I    ++G + EA +    ++     P 
Sbjct: 557 LLKAGKTQEALKLLSGMT--NGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPD 614

Query: 482 VAAYNCLTKGLCKIGEIDAAM-MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
              Y  L  G+C+    D A+ ML R  L ++   P    Y   +L  C++   +  I+ 
Sbjct: 615 TITYRSLAYGICREDGTDRAIRMLCR--LQDMGLSPDATFYNDILLGFCQNWRTDIAIDC 672

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
              M   GC P+E     ++  +     L+EA+++  NL
Sbjct: 673 FAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNL 711



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/477 (23%), Positives = 200/477 (41%), Gaps = 19/477 (3%)

Query: 142 AGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
            G+    +  FA+  A A  ++ N +     +        GRI +   ++  M      P
Sbjct: 111 GGRVADAERVFATLGASATVVTYNTMVNGYCRA-------GRIEDARRLISGMPF---PP 160

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           D F +  +IR L     +   L V+++M        V+ Y  L+   CK     +   L 
Sbjct: 161 DTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLL 220

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            EM+  G   D   Y VLI  +  EG V +A ++L DL   G + D   Y  ++  LC  
Sbjct: 221 DEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGS 280

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
           +++ +  +LF     +  APD  T N ++    + G +D   K++  M   +     D+ 
Sbjct: 281 ERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMS--EHGCIPDIV 338

Query: 382 KFFEFLVGKEE--RIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKM 438
            +   L G  +  R+  A+++   LK  G     I Y  ++  L  I + + A  L  +M
Sbjct: 339 TYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEM 398

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
              +   + ++F+  I    + G +  A +   ++ E    P +  YN +  GLC    I
Sbjct: 399 VCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCI 458

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D AM L+ + L +    P    +   +  +C     E   +++  M    CPP+    + 
Sbjct: 459 DDAMELLSN-LQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNT 517

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANT--IVYDEILIEHMKKKTADLVLSGL 613
           +I+ +C+ G L +A +    + E   +   +T  IV D  L++  K + A  +LSG+
Sbjct: 518 VITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDA-LLKAGKTQEALKLLSGM 573



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 84/387 (21%), Positives = 154/387 (39%), Gaps = 51/387 (13%)

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           +LI+ L   G+V  A  +   L   G  A +  YN+++ G CR  + + A +L       
Sbjct: 103 ILIKRLCSGGRVADAERVFATL---GASATVVTYNTMVNGYCRAGRIEDARRLISGM--- 156

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA 397
              PD  T NPL+      GR+ +   +   M     S +            K      A
Sbjct: 157 PFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQA 216

Query: 398 LDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALY----------------------- 433
           + + +E++ KG    +  YN+L+ A+   G+V +AL                        
Sbjct: 217 MVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKS 276

Query: 434 ------------LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
                       LF +M       + ++F+  +    + G +  A +  + + E   +P 
Sbjct: 277 LCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPD 336

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           +  Y+ +  GLC +G +D A+ L+   L +    P    Y   +  +C   + E   E++
Sbjct: 337 IVTYSSILDGLCDVGRVDDAVELLSR-LKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELM 395

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
            EM    CPP+EV  + +I+ +C+ G ++ A KV   + E       + + Y+ I+    
Sbjct: 396 AEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENG--CNPDIVTYNSIIDGLC 453

Query: 602 KKKTADLVLSGLKFFGLESKLKAKGCK 628
            ++  D  +       L S L++ GCK
Sbjct: 454 NERCIDDAME------LLSNLQSYGCK 474



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 80/192 (41%), Gaps = 2/192 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + + +E L+ M  N C P+   Y  ++  L         L++   M       D++ 
Sbjct: 525 KGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG--TPDLIT 582

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I  + K G++    +L R M  NG+  D   Y  L  G+  E    +A  +L  L 
Sbjct: 583 YNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQ 642

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D G   D   YN I+ G C+  + D A   F   V     PD ST   LL   A    +D
Sbjct: 643 DMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLD 702

Query: 361 NFFKLLAQMEKL 372
              +LL  +  L
Sbjct: 703 EAKQLLVNLCSL 714



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 56/122 (45%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E L++L  M  N   PD   Y ++   +  E   D  +R+   ++   +  D   Y
Sbjct: 594 GKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFY 653

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +++G C+  R     + F  M  +G + D + Y +L+E L  E  + +A  LL +L  
Sbjct: 654 NDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCS 713

Query: 302 SG 303
            G
Sbjct: 714 LG 715


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 180/385 (46%), Gaps = 6/385 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD++A+   + +L  +  L+  L ++  M     + DV++Y  +I  LC   R     ++
Sbjct: 117 PDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKV 176

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           +R + + G+  D      L+ GL   G+V  A +L+  ++  G + +  +YN++I G CR
Sbjct: 177 WRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCR 236

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           + + DKA K+     +    PD  T N LL  C E G +D   +L+  ME  +  V  DL
Sbjct: 237 MGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETME--RSGVEPDL 294

Query: 381 EKFFEFLVGKEERIMM---ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGK 437
             + E L G  +  M+    L + E ++ KG   V  YN ++ A  +    +K   LF +
Sbjct: 295 YSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEE 354

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M G  +  + ++F+I I   +  G      +  +++ +M  +P    Y  +   LCK G+
Sbjct: 355 MCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGK 414

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           +D A  + RD + N    P    Y   +   C++      + + +EM  +G  P+EV   
Sbjct: 415 VDVAHSVFRDMVEN-GVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYK 473

Query: 558 AIISGMCKHGTLEEARKVFTNLRER 582
            I+ G+ +   +  A +V+  + ER
Sbjct: 474 LIVGGLIRGKKISLACRVWDQMMER 498



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 147/344 (42%), Gaps = 10/344 (2%)

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
           H L  +M   G + D   +   +  L  + ++  A +L   +   G   D+  Y  II  
Sbjct: 104 HSLLLDMDSLGFVPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDA 163

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
           LC  K+FD+A K++   +   L+PD+     L+V     GR+D  ++L+  + K    V 
Sbjct: 164 LCNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVN 223

Query: 378 ADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFG 436
           + +         +  R+  A+ +   +   G    +  YNIL+    E G V +A+ L  
Sbjct: 224 SLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVE 283

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP---SVAAYNCLTKGLC 493
            M    +E +  S++  ++   ++  +  A   H  ++E  Q      V +YN +    C
Sbjct: 284 TMERSGVEPDLYSYNELLKGFCKANMVDRA---HLMMVERMQTKGMCDVVSYNTVITAFC 340

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           K         L  +  G     P    + + I    R G    + ++L+EMT+    P+ 
Sbjct: 341 KARRTRKGYELFEEMCGK-GIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDC 399

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +  +A++  +CK+G ++ A  VF ++ E  +    + I Y+ +L
Sbjct: 400 IFYTAVVDHLCKNGKVDVAHSVFRDMVENGV--NPDVISYNALL 441



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/417 (19%), Positives = 161/417 (38%), Gaps = 48/417 (11%)

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           M +  + A  +AY + I  L K G + +   LF +M E+   +    Y   I  L+   +
Sbjct: 1   MYQSSIGAHRLAYRSQISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSR 60

Query: 289 VGKA---------------------------C------------DLLKDLVDSGYRADLG 309
           +  A                           C             LL D+   G+  D+ 
Sbjct: 61  LHLAHHYYRRHVIPRGFSLLPFTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIW 120

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            +N+ +  LCR  + + A +LF         PD  +   ++       R D   K+  ++
Sbjct: 121 AFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRL 180

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALD-VFEELKGKGYSSVPIYNILMGALLEIG 426
             +   ++ D +     +VG     R+ +A + V   +KG    +  +YN L+     +G
Sbjct: 181 --IDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMG 238

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            V KA+ +   M       + ++++I +    E G + EA      +      P + +YN
Sbjct: 239 RVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYN 298

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L KG CK   +D A +++ + +           Y   I   C++    K  E+  EM  
Sbjct: 299 ELLKGFCKANMVDRAHLMMVERMQTKGMCDV-VSYNTVITAFCKARRTRKGYELFEEMCG 357

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           +G  P+ V  + +I    + G+    +K+   + + ++L +    ++   +++H+ K
Sbjct: 358 KGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDC---IFYTAVVDHLCK 411


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 198/413 (47%), Gaps = 8/413 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ + +++L +M  + C+P+ F Y  ++  L  E  ++  +R+  EMK+  +E DV+ Y 
Sbjct: 25  RLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYS 84

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TLI G C  G + RG  LF EM E GI  +  +Y  LI G   +G   +A  +L  + + 
Sbjct: 85  TLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTER 144

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + D+  Y  +IGGLC+  +  KA  LF++  +    P   T N L+    + G + + 
Sbjct: 145 GIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDA 204

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IYNI 417
           FK+   M  L+     ++  +   ++G     ++  A+ +F  L   G    P    +N 
Sbjct: 205 FKIFETM--LEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNT 262

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++  L + G + KA+ ++  M       N  +  I I  +++SG I +A E   ++ ++ 
Sbjct: 263 VIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLG 322

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
            VPS   Y+ +  G CK+  ++ A  L    +      PT F Y   +  +C+    E+ 
Sbjct: 323 LVPSSTTYSVMIDGFCKMHMLNFAKGLFSR-MKISGLSPTLFDYNTLMASLCKESSLEQA 381

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             +  EM +  C P+ +  + +I G  K G +  A+++  ++++  L  +A T
Sbjct: 382 RRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYT 434



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 112/447 (25%), Positives = 212/447 (47%), Gaps = 21/447 (4%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           N+  YC+  + L +           +GR+ E + +L +M+R   + DV  Y+ +I    +
Sbjct: 44  NSFTYCILMDGLCK-----------EGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCS 92

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
           +  LD    +++EM +  +  +V+ Y  LI G CK G       +   M E GI  D   
Sbjct: 93  KGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYT 152

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           Y  +I GL  +G+  KA DL   + + G       YN +I GLC+      A+K+FE  +
Sbjct: 153 YTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETML 212

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEER 393
           +     +  + N L++     G++D   KL + + +    V  D+  F   + G  KE R
Sbjct: 213 EKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGR 272

Query: 394 IMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           +  A+++++ +  +G + ++   +IL+G  ++ G + KA+ L+ ++  L L  +S ++S+
Sbjct: 273 LDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSV 332

Query: 453 AIQ--CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
            I   C +   +  +      KI  +S  P++  YN L   LCK   ++ A  L ++ + 
Sbjct: 333 MIDGFCKMHMLNFAKGLFSRMKISGLS--PTLFDYNTLMASLCKESSLEQARRLFQE-MK 389

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
                P    + + I    ++G+     E+LN+M Q G  P+    S+ I+ + K G +E
Sbjct: 390 ESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQME 449

Query: 571 EARKVFTNLRERKLLTEANTIVYDEIL 597
           EA+  F ++    +  + +  VYD ++
Sbjct: 450 EAKGAFDSMIASGITPDNH--VYDSLI 474



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 100/440 (22%), Positives = 188/440 (42%), Gaps = 27/440 (6%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
           +KG   N   Y+ L     +  L+R A  V   M  +G                   R  
Sbjct: 108 EKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRAR 167

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + L++ + M     +P    Y  +I  L  E  +    +++E M +     +V++Y TLI
Sbjct: 168 KALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLI 227

Query: 246 MGLCKGGRVVRGHELFREMKENGILI--DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           MGLC  G++    +LF  + E+G  +  D   +  +I+GL  EG++ KA ++   +++ G
Sbjct: 228 MGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERG 287

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
              +L   + +IG   +    DKA +L++   +  L P  +T + ++    +M  M NF 
Sbjct: 288 SFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKM-HMLNFA 346

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
           K L    K+   ++  L  +   +    KE  +  A  +F+E+K        I +NI++ 
Sbjct: 347 KGLFSRMKIS-GLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMID 405

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
             L+ G++  A  L   M+ + L  ++ ++S  I    + G + EA    + +I     P
Sbjct: 406 GTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITP 465

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
               Y+ L KG     EI+  + L+R           E   ++ +  +C S E   ++E+
Sbjct: 466 DNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILDLEITNSI-LTFLCNSAEHLHVMEL 524

Query: 541 LNEMTQEGCPPNEVICSAII 560
           L   + E      + C  ++
Sbjct: 525 LPNFSSESSGGTSISCDKLL 544


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 196/397 (49%), Gaps = 9/397 (2%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C+P+  +YT ++R L A+R  D  + +   M+   V ADV+ Y TLI GLC    V +  
Sbjct: 111 CRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAV 170

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           EL  EM E+GI  +  +Y  L++G    G+      +  ++ + G   D+ +Y  +I  L
Sbjct: 171 ELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSL 230

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C+V +  KA+ + ++ V+  L P+  T N L+ C  + G +     +L +M   +  VA 
Sbjct: 231 CKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMS--EKGVAP 288

Query: 379 DLEKFFEFLVGKEERIMM--ALDVFEEL-KGKGY--SSVPIYNILMGALLEIGEVKKALY 433
           D+  +   + G  + + M  A+ + EE+ +GK     +V  +N ++  L +IG +++A  
Sbjct: 289 DVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQ 348

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           +   M      VN +++++ I   +    + +A E  +++  +   P    Y+ L KG C
Sbjct: 349 VRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFC 408

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           K+ ++D A  L+   + +    P  F Y   ++ +C  G  E+   + NEM     P + 
Sbjct: 409 KMWQVDRAEDLL-STMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM-DNNFPLDV 466

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           V  S +I G CK G L+ A+++  ++ +  L  +A T
Sbjct: 467 VAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVT 503



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 162/365 (44%), Gaps = 53/365 (14%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G + N  +YN L  C+ +                +G + E + +L+KM      PDV 
Sbjct: 248 RRGLEPNVVTYNVLINCMCK----------------EGSVKEAIGVLKKMSEKGVAPDVV 291

Query: 205 AYTAMIRVLAAERNLDACLRVWEEM--KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
            Y  +I+ L+    +D  + + EEM   K++V+ +V+ + ++I GLC  GR+ +  ++  
Sbjct: 292 TYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRA 351

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            M+E G +++   Y +LI GL+   KV KA +L+ ++   G   D   Y+ +I G C++ 
Sbjct: 352 MMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMW 411

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           Q D+A  L        + P+     PLLV   E G M+                      
Sbjct: 412 QVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMER--------------------- 450

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                         A ++F E+       V  Y+ ++    + G++K A  L   +    
Sbjct: 451 --------------ARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEG 496

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           L  +++++SI I    +SGD+  A     ++     +P VA ++ L +G    GEI+  +
Sbjct: 497 LTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVL 556

Query: 503 MLVRD 507
            L+R+
Sbjct: 557 ELIRE 561



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 20/225 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           ++ G   N  +YN L   L R +  R A ++ + M S G                   ++
Sbjct: 354 EETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQV 413

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
               ++L  MR    +P++F Y  ++  +  +  ++    ++ EM  +    DV+AY T+
Sbjct: 414 DRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNF-PLDVVAYSTM 472

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK G +    EL + + + G+  D   Y ++I      G +  A  +LK +  SG+
Sbjct: 473 IHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGF 532

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
             D+ +++S+I G     + +K  +L    +  ++A D   ++ L
Sbjct: 533 LPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTL 577



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 133/351 (37%), Gaps = 79/351 (22%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEV----------------TV------QDDLA-------- 340
           YN+++  LCR    D+A  L                   TV       D LA        
Sbjct: 80  YNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLR 139

Query: 341 --------PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--K 390
                    D  T   L+    +   +D   +L+ +M   +  +  ++  +   L G  K
Sbjct: 140 SMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEM--CESGIEPNVVVYSSLLQGYCK 197

Query: 391 EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
             R      VF E+  KG    V +Y  L+ +L ++G+ KKA  +   M    LE N ++
Sbjct: 198 SGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVT 257

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-- 507
           +++ I C  + G + EA     K+ E    P V  YN L KGL  + E+D AM L+ +  
Sbjct: 258 YNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMV 317

Query: 508 -----------CLGNVASGPTEF-----------------------KYALTILHVCRSGE 533
                         +V  G  +                         Y L I  + R  +
Sbjct: 318 RGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHK 377

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
             K +E+++EMT  G  P+    S +I G CK   ++ A  + + +R+R +
Sbjct: 378 VRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGI 428



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 45/187 (24%)

Query: 476 MSQVPSV---AAYNCLTKGLCKIGEIDAAMMLVR-------------------------- 506
           +  +PSV    +YN +   LC+ G  D A  L+R                          
Sbjct: 68  LDALPSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCA 127

Query: 507 DCLGNVASG-----------PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           D L + A G                Y   I  +C + E +K +E++ EM + G  PN V+
Sbjct: 128 DRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVV 187

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI---LIEHMKKKTADLVLSG 612
            S+++ G CK G  E+  KVF  + E+ +  E + ++Y  +   L +  K K A  V+  
Sbjct: 188 YSSLLQGYCKSGRWEDVGKVFVEMSEKGI--EPDVVMYTGLIDSLCKVGKAKKAHGVMDM 245

Query: 613 LKFFGLE 619
           +   GLE
Sbjct: 246 MVRRGLE 252



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           E+L+ +      PD   Y+ +I + A   +++A   V ++M       DV  + +LI G 
Sbjct: 487 ELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGY 546

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
              G + +  EL REM    I +D  I   L   LV   + GKA  LL+ L D       
Sbjct: 547 STKGEINKVLELIREMITKNIALDSKIISTLSTSLVASNE-GKA--LLQSLPDFSAEISK 603

Query: 309 GIYNS 313
           G  NS
Sbjct: 604 GNINS 608


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 190/433 (43%), Gaps = 50/433 (11%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ + L  L KM      PDV+ YTA+I  L  E  L    +  EEM    +  +V+ Y 
Sbjct: 26  RLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYT 85

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI GLCKGGRV     L  +M++  +      Y  LI GL    +  +A DLL+++V S
Sbjct: 86  VLIDGLCKGGRVDEAVALLSKMRKKCVPT-AVTYNSLISGLCKAERASEAYDLLEEMVYS 144

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF------------------- 343
           G   D+  Y ++I G C+ K+ D A ++FE  V     PD                    
Sbjct: 145 GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEA 204

Query: 344 -----------------STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
                             T N L+     MG+MD    LL +M +   S   D+  +   
Sbjct: 205 IDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSS--PDVVTYTTL 262

Query: 387 LVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           + G  K  R+  A D+  ++  KG +  V  +  LM  L     +  A+++ G+MR  + 
Sbjct: 263 MNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSC 322

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKII--EMSQVPSVAAYNCLTKGLCKIGEIDAA 501
                +++  +  +  +  + EA     K +  EM   P+V ++N + +GLCK+     A
Sbjct: 323 SPTVYTYNTILDGYCRANQLEEA----RKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEA 378

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE-GCPPNEVICSAII 560
           M LV +      + P    Y   I  +CR  + ++   V  +M +E GC PN +  S ++
Sbjct: 379 MELVEEARRRRCN-PDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLV 437

Query: 561 SGMCKHGTLEEAR 573
           +G+C  G L+ AR
Sbjct: 438 TGLCNAGMLDRAR 450



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 113/461 (24%), Positives = 199/461 (43%), Gaps = 32/461 (6%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-------------------GRIA 185
            KG+  +  +Y A+ + L   N    A +  E M ++                   GR+ 
Sbjct: 39  SKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVD 98

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E + +L KMR+  C P    Y ++I  L           + EEM       D+  Y TLI
Sbjct: 99  EAVALLSKMRKK-CVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLI 157

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY- 304
            G CK  +      +F ++   G   D   Y  LI+GL  EG++ +A DL   ++ SG  
Sbjct: 158 TGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSC 217

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             +   YNS+I G CR+ + D+A  L E   +   +PD  T   L+    ++ R+D+ + 
Sbjct: 218 MPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYD 277

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
           LL QM +   +   D+  F   + G  +E R+  A+ +  E++ K  S +V  YN ++  
Sbjct: 278 LLNQMTRKGLT--PDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDG 335

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
                ++++A      +  ++   N +SF+I I+   +     EA E   +       P 
Sbjct: 336 YCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPD 393

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V  Y  +  GLC+  ++D A  + R  L      P    Y+  +  +C +G    +++  
Sbjct: 394 VVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAG----MLDRA 449

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
               ++GC PN    + +I    K    E+AR++  ++ +R
Sbjct: 450 RGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 173/376 (46%), Gaps = 24/376 (6%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R +E  ++LE+M  + C PD+F YT +I      +  D  LRV+E++       DV+ Y 
Sbjct: 130 RASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYS 189

Query: 243 TLIMGLCKGGRVVRGHELF-REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            LI GLCK GR+    +LF R +K    + +   Y  LI G    GK+ +A +LL+ + +
Sbjct: 190 CLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAE 249

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G   D+  Y +++ G C++ + D AY L     +  L PD  T   L+       R+ +
Sbjct: 250 TGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSD 309

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG-------KEERIMMALDVFEELKGKGYSSVPI 414
              +L +M +   S +  +  +   L G       +E R  M     EE+      +V  
Sbjct: 310 AVHILGEMRRK--SCSPTVYTYNTILDGYCRANQLEEARKFM----LEEMDCP--PNVVS 361

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           +NI++  L ++    +A+ L  + R      + + ++  I        + EAC  + K++
Sbjct: 362 FNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKML 421

Query: 475 EM-SQVPSVAAYNCLTKGLCKIGEIDAAMMLV-RDCLGNVASGPTEFKYALTILHVCRSG 532
           E    +P+   Y+ L  GLC  G +D A   + + C+ N+ +      Y L I    ++ 
Sbjct: 422 EEPGCLPNSITYSTLVTGLCNAGMLDRARGYIEKGCVPNIGT------YNLLIDAFRKAN 475

Query: 533 EAEKIIEVLNEMTQEG 548
             E   E+L++M Q G
Sbjct: 476 RDEDARELLDDMVQRG 491



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 127/327 (38%), Gaps = 41/327 (12%)

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           N    D   Y  LI+GL    ++ +A   L  +V  G+  D+  Y ++I  LC   +  +
Sbjct: 5   NSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHE 64

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A K  E     +L P+  T   L+    + GR+D    LL++M K     A         
Sbjct: 65  ARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISG 124

Query: 387 LVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM--RGLNL 443
           L  K ER   A D+ EE+   G    +  Y  L+    +  +   AL +F ++  RG   
Sbjct: 125 LC-KAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR- 182

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
                                               P V  Y+CL  GLCK G +  A+ 
Sbjct: 183 ------------------------------------PDVVTYSCLIDGLCKEGRLKEAID 206

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L    + + +  P    Y   I   CR G+ ++ + +L  M + G  P+ V  + +++G 
Sbjct: 207 LFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGF 266

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANT 590
           CK   L++A  +   +  + L  +  T
Sbjct: 267 CKLARLDDAYDLLNQMTRKGLTPDVVT 293



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 5/123 (4%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMAY 241
           R +E +E++E+ RR  C PDV  YT +I  L  E+ +D   RV+ +M ++     + + Y
Sbjct: 374 RSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITY 433

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+ GLC  G + R     R   E G + +   Y +LI+      +   A +LL D+V 
Sbjct: 434 STLVTGLCNAGMLDRA----RGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQ 489

Query: 302 SGY 304
            G+
Sbjct: 490 RGF 492


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 129/502 (25%), Positives = 216/502 (43%), Gaps = 96/502 (19%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL------VEA 236
           RI+E   +   M++  C+PD  AY  +++ L    N++  L++ +EM  D        + 
Sbjct: 241 RISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKP 300

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
            +++Y  +I GLCK  R     ELF+EMK  GI+ D   Y  LI G    GK  KA  L 
Sbjct: 301 TLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLF 360

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            +++D G + D+   + +I  LC+  +  +A KL EV +Q    PD  T   L+      
Sbjct: 361 NEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMK 420

Query: 357 GRMDNFFKLLAQMEKL--------------------KFSVAADLEK-------------- 382
            R+    +L  +M+KL                       +A +L K              
Sbjct: 421 HRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCK 480

Query: 383 ----FFEFLV------GKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKA 431
                +  ++      G+E+    A ++F+E+K  G    V  Y  L+      G+ K A
Sbjct: 481 PNAISYSIIIDGLCKCGREDE---ARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDA 537

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE----------------------- 468
            YLF +M  + ++ +  +FS+ I    + G ++EA E                       
Sbjct: 538 KYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKG 597

Query: 469 -CHN-KIIEMSQV----------PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
            C N +I E +Q+          P V  Y  L KGLC+ G I  A+ L +  L +     
Sbjct: 598 LCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYG 657

Query: 517 TEFK-----YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
           T FK     Y++ I  +C+ G  ++  E+  EM   G  PN +  +++I G C+ G LE+
Sbjct: 658 TNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLED 717

Query: 572 ARKVFTNLRERKLLTEANTIVY 593
           A+ +F  + ++ +  + N + Y
Sbjct: 718 AKHLFNEMVDQGV--QLNAVTY 737



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 188/400 (47%), Gaps = 24/400 (6%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           CKP + +Y+ +I  L  +R  D    +++EMK   +  DV++Y +LI G C+ G+  +  
Sbjct: 117 CKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAK 176

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            LF EM + GI  D     +LI+ L  EGKV +A +LL+ ++  G   D+  Y+++I GL
Sbjct: 177 CLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGL 236

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM----EKLKF 374
           C   +  +A +LF    +    PD      L+    + G ++   +L  +M     +   
Sbjct: 237 CMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGI 296

Query: 375 SVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKA 431
                L  +   + G  K+ R   A ++F+E+K +G    V  Y  L+      G+ +KA
Sbjct: 297 KCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKA 356

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
             LF +M  + ++ +  + S+ I    + G ++EA +    +I+   +P V     L KG
Sbjct: 357 KCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKG 416

Query: 492 LCKIGEIDAAMMLVRD-----CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
           LC    I  A  L        C+ NV +  T  K       +C+SG  +  +E+   M  
Sbjct: 417 LCMKHRISKATQLFLKMQKLGCMPNVVTCATLMK------GLCQSGNIKIALELHKNMLS 470

Query: 547 E------GCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           +       C PN +  S II G+CK G  +EAR++F  ++
Sbjct: 471 DTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMK 510



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 198/419 (47%), Gaps = 24/419 (5%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ E  E+LE M +  C  D+  Y+ +I+ L  +  +    +++  MKK     D +A
Sbjct: 23  EGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIA 82

Query: 241 YVTLIMGLCKGGRVVRGHELFREM----KENGILIDRAI--YGVLIEGLVGEGKVGKACD 294
           Y TL+ GLC+ G++     L +EM     + GI     +  Y ++I+GL  + +  +A +
Sbjct: 83  YGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARE 142

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           L K++   G   D+  Y S+I G CR  +++KA  LF   +   +  D +T + L+    
Sbjct: 143 LFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILC 202

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSV 412
           + G++    +LL  M  ++     D+  +   + G   + RI  A  +F  ++  G    
Sbjct: 203 KEGKVIEANELLEVM--IQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPD 260

Query: 413 PI-YNILMGALLEIGEVKKALYLFGKM------RGLNLEVNSLSFSIAIQCHVESGDILE 465
            I Y  LM  L + G +  AL L  +M       G+  +   +S+SI I    +     E
Sbjct: 261 AIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDE 320

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A E   ++     +P V +Y  L  G C  G+ + A  L  + L +V   P     ++ I
Sbjct: 321 ARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEML-DVGIQPDVTTSSVLI 379

Query: 526 LHVCRSG---EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
             +C+ G   EA K++EV+    Q GC P+ V C+ ++ G+C    + +A ++F  +++
Sbjct: 380 DMLCKKGKVIEANKLLEVV---IQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQK 435



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 182/404 (45%), Gaps = 14/404 (3%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PDV     +I +   E  +     + E M +     D++ Y TLI GLC   R+    +
Sbjct: 7   QPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQ 66

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD--SGY----RADLGIYNS 313
           LF  MK+ G   D   YG L++GL   GK+  A  L +++++  S Y    +  L  Y+ 
Sbjct: 67  LFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSI 126

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           II GLC+ ++ D+A +LF+      + PD  +   L+      G+ +    L  +M  + 
Sbjct: 127 IIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVG 186

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKAL 432
                        ++ KE +++ A ++ E +  +G    +  Y+ L+  L     + +A 
Sbjct: 187 IRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEAT 246

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE------MSQVPSVAAYN 486
            LF  M+ L    +++++   ++   ++G+I  A + H +++       +   P++ +Y+
Sbjct: 247 RLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYS 306

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            +  GLCK    D A  L ++ +      P    Y   I   C SG+ EK   + NEM  
Sbjct: 307 IIIDGLCKDRREDEARELFKE-MKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLD 365

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            G  P+    S +I  +CK G + EA K+   + +R  + +  T
Sbjct: 366 VGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVT 409



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 158/335 (47%), Gaps = 17/335 (5%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL------VEA 236
           RI++  ++  KM++  C P+V     +++ L    N+   L + + M  D        + 
Sbjct: 422 RISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKP 481

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           + ++Y  +I GLCK GR     ELF+EMK  G++ D   Y  LI G    GK   A  L 
Sbjct: 482 NAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLF 541

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            ++VD G + D+  ++ +I  LC+  +  +A +L EV +Q    P+  T   L+      
Sbjct: 542 NEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMN 601

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL------KGKG 408
            R+    +L  +M+KL      D+  +   + G  +   I  AL++ +++       G  
Sbjct: 602 DRISEATQLFMKMQKL--GCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTN 659

Query: 409 YS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
           +   V  Y+I++  L + G   +A  LF +M+ L +  N +S++  I     SG + +A 
Sbjct: 660 FKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAK 719

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
              N++++     +   Y+ +  G CK G+ID A+
Sbjct: 720 HLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKAL 754



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 155/359 (43%), Gaps = 37/359 (10%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           ++ DV     LI   CK G+V+  +EL   M + G ++D   Y  LI+GL  + ++ +A 
Sbjct: 6   IQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEAT 65

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            L   +   G R D   Y +++ GLC+  + + A  L +  + D          P LV  
Sbjct: 66  QLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIK-CKPTLV-- 122

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SV 412
                               +S+  D        + K+ R   A ++F+E+K +G    V
Sbjct: 123 -------------------SYSIIID-------GLCKDRREDEARELFKEMKAQGMMPDV 156

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             Y  L+      G+ +KA  LF +M  + +  +  + S+ I    + G ++EA E    
Sbjct: 157 ISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEV 216

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           +I+   +  +  Y+ L KGLC    I  A  L    +  +   P    Y   +  +C++G
Sbjct: 217 MIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMS-MQKLGCRPDAIAYGTLMKGLCQTG 275

Query: 533 EAEKII----EVLNEMTQEG--CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
                +    E+LN+  + G  C P  +  S II G+CK    +EAR++F  ++ + ++
Sbjct: 276 NINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIM 334



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 138/313 (44%), Gaps = 43/313 (13%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           NA++Y +  + L +            GR  E  E+ ++M+     PDV +YT++I     
Sbjct: 482 NAISYSIIIDGLCKC-----------GREDEARELFKEMKALGVIPDVISYTSLIHGFCR 530

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
                    ++ EM    V+ DV  +  LI  LCK G+V+  +EL   M + G + +   
Sbjct: 531 SGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVT 590

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           Y  L++GL    ++ +A  L   +   G   D+  Y +++ GLC+      A +L +  +
Sbjct: 591 YTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKML 650

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD-LEKFFEFLVGKEERI 394
            D                   G+    FK     + + +S+  D L K      G+E+  
Sbjct: 651 SDT------------------GQYGTNFK----PDVISYSIIIDGLCKH-----GREDE- 682

Query: 395 MMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
             A ++F+E+K  G   +V  Y  L+      G+++ A +LF +M    +++N++++S+ 
Sbjct: 683 --ARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVM 740

Query: 454 IQCHVESGDILEA 466
           I    + G I +A
Sbjct: 741 IHGFCKEGQIDKA 753



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 98/201 (48%), Gaps = 8/201 (3%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           +++  +G++ E  E+LE M +  C P+   YT +++ L     +    +++ +M+K    
Sbjct: 561 DMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCL 620

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKEN------GILIDRAIYGVLIEGLVGEGKV 289
            DV+ Y TL+ GLC+ G +    EL ++M  +          D   Y ++I+GL   G+ 
Sbjct: 621 PDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGRE 680

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            +A +L K++   G   ++  Y S+I G CR  + + A  LF   V   +  +  T + +
Sbjct: 681 DEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVM 740

Query: 350 LVCCAEMGRMDNFFKLLAQME 370
           +    + G++D    L  +ME
Sbjct: 741 IHGFCKEGQIDK--ALFQKME 759



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 9/152 (5%)

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
           G+  +V +    I + C  + G ++EA E    +++   +  +  Y+ L KGLC    I 
Sbjct: 5   GIQPDVTTSGVLIDMFC--KEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRIS 62

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII----EVLNEMTQEG--CPPNE 553
            A  L    +  +   P    Y   +  +C++G+    +    E+LN+ +Q G  C P  
Sbjct: 63  EATQLFMS-MKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTL 121

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
           V  S II G+CK    +EAR++F  ++ + ++
Sbjct: 122 VSYSIIIDGLCKDRREDEARELFKEMKAQGMM 153


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/461 (25%), Positives = 198/461 (42%), Gaps = 60/461 (13%)

Query: 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEM-------------------LE 189
           K +  +YNAL     + N    A++V + M S+G + ++                   LE
Sbjct: 135 KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALE 194

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           I E++ ++ C+P V  YT +I     +  +D  +++ +EM    +E D + Y  +I G+C
Sbjct: 195 IFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMC 254

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K   V +  EL R +   G   D   Y +L+  L+  GK  +   L+ +++  G + ++ 
Sbjct: 255 KEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVV 314

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            ++ +IG LCR  + ++A  L     +  L PD    +PL+      GR+D     LA  
Sbjct: 315 THSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLD-----LAT- 368

Query: 370 EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVK 429
                       +F E+++                       +  YN +M  L   G+  
Sbjct: 369 ------------EFLEYMISD----------------GCLPDIVNYNTIMAGLCRTGKAD 400

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
           +AL +F K+  +    N  S++        SGD   A E   K++     P    YN L 
Sbjct: 401 QALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLI 460

Query: 490 KGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
             LC+ G +D A+ L+ D    + SG   P    Y + +L +C+   A   IEVL  MT+
Sbjct: 461 SCLCRDGMVDEAIELLVD----MQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTE 516

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           +GC PNE     +I G+   G   EA ++  +L     ++E
Sbjct: 517 KGCQPNETTYILLIEGIGFSGLRAEAMELANSLHGMNAISE 557



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 99/457 (21%), Positives = 173/457 (37%), Gaps = 93/457 (20%)

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC--------------- 293
           C+ G+          M + G   D  +   LI+G      +GKA                
Sbjct: 80  CRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYGKPDVF 139

Query: 294 -------------------DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
                               +L  +   G+  D+  YN +IG  C   + D A ++FE  
Sbjct: 140 AYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEEL 199

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEE 392
           ++D+  P   T   L+      G +D   KLL +M  L   +  D   +   + G  KE 
Sbjct: 200 LKDNCEPTVITYTILIEATILDGGIDVAMKLLDEM--LSKGLEPDTLTYNAIIRGMCKEM 257

Query: 393 RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
            +  A ++   L  +G    +  YNIL+  LL  G+  +   L  +M  +  + N ++ S
Sbjct: 258 MVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHS 317

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVR 506
           I I      G + EA      + E    P    Y+ L  G C+ G +D A      M+  
Sbjct: 318 ILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISD 377

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN-------------- 552
            CL      P    Y   +  +CR+G+A++ +EV  ++ + GCPPN              
Sbjct: 378 GCL------PDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSS 431

Query: 553 ---------------------EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
                                E+  +++IS +C+ G ++EA ++  +++  +     N +
Sbjct: 432 GDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRY--RPNVV 489

Query: 592 VYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
            Y+ IL+   K   A+  +  L      + +  KGC+
Sbjct: 490 SYNIILLGLCKVNRANDAIEVL------AAMTEKGCQ 520


>gi|242038895|ref|XP_002466842.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
 gi|241920696|gb|EER93840.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
          Length = 1090

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/467 (23%), Positives = 210/467 (44%), Gaps = 23/467 (4%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEMLEIL 191
           N A+YN + +   +   F+AA  V E M+                      R A    +L
Sbjct: 188 NSATYNTILHWYVKKGRFKAALCVLEDMERDSIQADIYTYNIMIDKLCRIKRSARAFLLL 247

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           ++MR++   PD   Y  +I     E  ++    V+  M +  +   V  Y T+I G C+ 
Sbjct: 248 KRMRKDDLTPDECTYNTLINGFFGEGKINHARCVFNHMLRQTLVPSVATYTTMIDGYCRN 307

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
            R+ +   +  EM+  G++     Y  L+ G      +G A DL+ DL   G   +  + 
Sbjct: 308 RRIDKALSVLSEMEITGVMPSELTYSALLNGYCKVSMLGPALDLMVDLKSRGITINKTMC 367

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
             +I G C+V +  KA ++ +  ++D + PD  T + L+     M +M    ++L++M+K
Sbjct: 368 TILIDGFCQVGEISKAKQILKSMLEDGIDPDVVTYSALINGMCRMAKMHETKEILSRMQK 427

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKK 430
                   L         K   + +AL  F ++  +G  + P I+N L+ A    G + +
Sbjct: 428 SGILPNDVLYTTLICYYCKAGYVKVALKHFVDIYRRGLVANPVIHNALLRAFYREGMITE 487

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A +    M  +N+  NS+SF+  I  +   G I+EA   ++ ++     P+V  Y  L +
Sbjct: 488 AEHFRQYMSRMNISFNSVSFNCIIDSYCHRGKIVEAFSVYDDMVRYGHSPNVCTYQNLLR 547

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           GLC+ G +  A   +  CL ++ S   E  +   +L +C+ G  ++ +++  +M +  C 
Sbjct: 548 GLCQGGHLVQAKQFMF-CLLDIPSAVDEKTFNALLLGICKYGTLDEALDICEKMVKNNCL 606

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           P+    + ++SG C+ G +  A  +   + E+ ++   +T+ Y  +L
Sbjct: 607 PDIHTYTILLSGFCRKGKILPALVMLQMMLEKGVV--PDTVAYTCLL 651



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 185/411 (45%), Gaps = 11/411 (2%)

Query: 181  QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK-KDLVEADVM 239
            +G+I   L +L+ M      PD  AYT ++  L  E  + A   V++E+  K+ + AD +
Sbjct: 622  KGKILPALVMLQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGLYADCI 681

Query: 240  AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            AY +L+ G  KGG V     +  +M +N +  + A Y +L+ G V  G+  K+  L K +
Sbjct: 682  AYNSLMNGYLKGGNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYM 741

Query: 300  VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            V  G R D   Y  +I GL      D A K  E  V + + PD    + L+   +E  +M
Sbjct: 742  VRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDKLVFDILITSFSEKSKM 801

Query: 360  DNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSSVPIYN 416
             N  +L   M+ L  S ++   K F  ++    ++  +  + +V  E+   G      + 
Sbjct: 802  HNALRLFNCMKCLHLSPSS---KTFSAMINGLIRKNYLDQSHEVLHEMLQVGLQPNHTHY 858

Query: 417  I-LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
            I L+ A   +GE+ +A  L  +M+ + +    ++ S  I+     G + EA    + ++ 
Sbjct: 859  IALVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSNMMR 918

Query: 476  MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE-FKYALTILHVCRSGEA 534
               VP+VA +  L   LCK  +I  A+ L R  L  +     +   Y + I  +C+    
Sbjct: 919  SGMVPTVATFTTLMHSLCKESKIADALHLKR--LMELCRLKVDVVSYNVLITGLCKDKHI 976

Query: 535  EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
               +++  EM  +G  PN      +   M   G ++   ++  ++ ER L+
Sbjct: 977  SDALDLYGEMKSKGLWPNVTTYITLTGAMYSTGRMQNGEELLEDIEERGLI 1027



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 178/372 (47%), Gaps = 7/372 (1%)

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            + A++  +     LD  L + E+M K+    D+  Y  L+ G C+ G+++    + + M
Sbjct: 576 TFNALLLGICKYGTLDEALDICEKMVKNNCLPDIHTYTILLSGFCRKGKILPALVMLQMM 635

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV-DSGYRADLGIYNSIIGGLCRVKQ 323
            E G++ D   Y  L+ GL+ EG+V  A  + ++++   G  AD   YNS++ G  +   
Sbjct: 636 LEKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGLYADCIAYNSLMNGYLKGGN 695

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            +   ++     Q+++ P+ ++ N L+    + G+      L   M  ++  +  D   +
Sbjct: 696 VNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYM--VRKGIRPDNVTY 753

Query: 384 FEFLVGKEE--RIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
              ++G  E   I +A+   E++  +G +    +++IL+ +  E  ++  AL LF  M+ 
Sbjct: 754 RLLILGLSECGLIDIAVKFLEKMVLEGIFPDKLVFDILITSFSEKSKMHNALRLFNCMKC 813

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
           L+L  +S +FS  I   +    + ++ E  ++++++   P+   Y  L    C++GEID 
Sbjct: 814 LHLSPSSKTFSAMINGLIRKNYLDQSHEVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDR 873

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A  L ++ +  +   P E   +  I  +CR G+ E+ + V + M + G  P     + ++
Sbjct: 874 AFRL-KEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSNMMRSGMVPTVATFTTLM 932

Query: 561 SGMCKHGTLEEA 572
             +CK   + +A
Sbjct: 933 HSLCKESKIADA 944



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/396 (19%), Positives = 164/396 (41%), Gaps = 3/396 (0%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           + G   +  ++L+KM+ + C  +   Y  ++     +    A L V E+M++D ++AD+ 
Sbjct: 167 TNGEFRKAEDMLQKMK-SCCLSNSATYNTILHWYVKKGRFKAALCVLEDMERDSIQADIY 225

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I  LC+  R  R   L + M+++ +  D   Y  LI G  GEGK+  A  +   +
Sbjct: 226 TYNIMIDKLCRIKRSARAFLLLKRMRKDDLTPDECTYNTLINGFFGEGKINHARCVFNHM 285

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +       +  Y ++I G CR ++ DKA  +        + P   T + LL    ++  +
Sbjct: 286 LRQTLVPSVATYTTMIDGYCRNRRIDKALSVLSEMEITGVMPSELTYSALLNGYCKVSML 345

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
                L+  ++    ++   +         +   I  A  + + +   G    V  Y+ L
Sbjct: 346 GPALDLMVDLKSRGITINKTMCTILIDGFCQVGEISKAKQILKSMLEDGIDPDVVTYSAL 405

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  +  + ++ +   +  +M+   +  N + ++  I  + ++G +  A +    I     
Sbjct: 406 INGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKVALKHFVDIYRRGL 465

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           V +   +N L +   + G I  A    R  +  +        +   I   C  G+  +  
Sbjct: 466 VANPVIHNALLRAFYREGMITEAEHF-RQYMSRMNISFNSVSFNCIIDSYCHRGKIVEAF 524

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            V ++M + G  PN      ++ G+C+ G L +A++
Sbjct: 525 SVYDDMVRYGHSPNVCTYQNLLRGLCQGGHLVQAKQ 560



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 158/381 (41%), Gaps = 43/381 (11%)

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           +  ++ +LI+  V E KV  A   +  + D G++A     NSI+  L    +    +   
Sbjct: 84  NHVVFELLIKAYVKERKVLDAAVAVFFMDDCGFKASPVACNSILKALVEEGESKYVWLFL 143

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE 391
             ++      D +T N LL      G       +L +M+    S +A       + V K+
Sbjct: 144 RESLARKFPLDVTTCNILLNSLCTNGEFRKAEDMLQKMKSCCLSNSATYNTILHWYV-KK 202

Query: 392 ERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
            R   AL V E+++     + +  YNI++  L  I    +A  L  +MR  +L  +  ++
Sbjct: 203 GRFKAALCVLEDMERDSIQADIYTYNIMIDKLCRIKRSARAFLLLKRMRKDDLTPDECTY 262

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +  I      G I  A    N ++  + VPSVA Y  +  G C+   ID A+ ++ + + 
Sbjct: 263 NTLINGFFGEGKINHARCVFNHMLRQTLVPSVATYTTMIDGYCRNRRIDKALSVLSE-ME 321

Query: 511 NVASGPTEFKYA---------------------------------LTIL--HVCRSGEAE 535
                P+E  Y+                                  TIL    C+ GE  
Sbjct: 322 ITGVMPSELTYSALLNGYCKVSMLGPALDLMVDLKSRGITINKTMCTILIDGFCQVGEIS 381

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           K  ++L  M ++G  P+ V  SA+I+GMC+   + E +++ + +++  +L   N ++Y  
Sbjct: 382 KAKQILKSMLEDGIDPDVVTYSALINGMCRMAKMHETKEILSRMQKSGIL--PNDVLYTT 439

Query: 596 ILIEHMKKKTADLVLSGLKFF 616
           ++  + K   A  V   LK F
Sbjct: 440 LICYYCK---AGYVKVALKHF 457



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/304 (19%), Positives = 133/304 (43%), Gaps = 5/304 (1%)

Query: 181  QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            +G+ ++ L + + M R   +PD   Y  +I  L+    +D  ++  E+M  + +  D + 
Sbjct: 728  RGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDKLV 787

Query: 241  YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
            +  LI    +  ++     LF  MK   +      +  +I GL+ +  + ++ ++L +++
Sbjct: 788  FDILITSFSEKSKMHNALRLFNCMKCLHLSPSSKTFSAMINGLIRKNYLDQSHEVLHEML 847

Query: 301  DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
              G + +   Y +++   CRV + D+A++L E      + P     + ++      G+++
Sbjct: 848  QVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLE 907

Query: 361  NFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELK-GKGYSSVPIYNI 417
                + + M  ++  +   +  F   +  + KE +I  AL +   ++  +    V  YN+
Sbjct: 908  EAVIVFSNM--MRSGMVPTVATFTTLMHSLCKESKIADALHLKRLMELCRLKVDVVSYNV 965

Query: 418  LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
            L+  L +   +  AL L+G+M+   L  N  ++         +G +    E    I E  
Sbjct: 966  LITGLCKDKHISDALDLYGEMKSKGLWPNVTTYITLTGAMYSTGRMQNGEELLEDIEERG 1025

Query: 478  QVPS 481
             +P+
Sbjct: 1026 LIPA 1029



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 3/176 (1%)

Query: 177  LMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
            L++++ R+ E+     + E+M+     P   A +++IR L     L+  + V+  M +  
Sbjct: 861  LVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSNMMRSG 920

Query: 234  VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
            +   V  + TL+  LCK  ++     L R M+   + +D   Y VLI GL  +  +  A 
Sbjct: 921  MVPTVATFTTLMHSLCKESKIADALHLKRLMELCRLKVDVVSYNVLITGLCKDKHISDAL 980

Query: 294  DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            DL  ++   G   ++  Y ++ G +    +     +L E   +  L P F  +  L
Sbjct: 981  DLYGEMKSKGLWPNVTTYITLTGAMYSTGRMQNGEELLEDIEERGLIPAFKQLENL 1036


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 199/413 (48%), Gaps = 9/413 (2%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           LE+LE+M+     P    +T++I    A+ N+   LR+ EEM       +++   +L+ G
Sbjct: 315 LELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKG 374

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            C  G +     LF ++ E+G+  ++  Y VLIEG    G + KA +L   +  +G    
Sbjct: 375 YCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPS 434

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +   NS++ G  +   +++A KLF+  V   +A  F T N ++    + G+MD    LL 
Sbjct: 435 VFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIF-TYNIMMSWLCKGGKMDEACSLLD 493

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
            M  +   +  ++  + + ++G  ++  + MA  VF ++  +    +V  Y+IL+    +
Sbjct: 494 NM--VNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFK 551

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G+ +KAL LF +M  LN+     +F+  I    + G + EA +     +E   +PS   
Sbjct: 552 KGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMT 611

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN +  G  K G ID+A+ + R+ +      P    Y   I   C+S   +  ++  +EM
Sbjct: 612 YNSIVDGFIKEGNIDSALAVYRE-MCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEM 670

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            ++G   +    SA+I G CK   +E A+ +F  L E  L    N IVY+ ++
Sbjct: 671 REKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGL--SPNRIVYNSMI 721



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 195/434 (44%), Gaps = 17/434 (3%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           I E+ ++  KM       D F    M+R    E  ++     + E K+  V+ D  AY  
Sbjct: 241 IGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSI 300

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I  +CK      G EL  EMKE G +   A +  +I   V +G + +A  L +++++ G
Sbjct: 301 IIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCG 360

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
              +L +  S++ G C     D A  LF    +D L P+  T + L+  C   G ++   
Sbjct: 361 KPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKAS 420

Query: 364 KLLAQMEKLK------FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNI 417
           +L  QM KL       F+V + L  + +  + +E     A  +F+E    G +++  YNI
Sbjct: 421 ELYTQM-KLNGIPPSVFNVNSLLRGYLKAPLWEE-----ASKLFDEAVDCGVANIFTYNI 474

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           +M  L + G++ +A  L   M    +  N +S++  I  H   G++  A    + ++   
Sbjct: 475 MMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARD 534

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG-NVASGPTEFKYALTILHVCRSGEAEK 536
             P+V  Y+ L  G  K G+ + A+ L    L  N+A  PT+F +   I  +C+ G+  +
Sbjct: 535 LKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIA--PTDFTFNTIINGLCKVGQMSE 592

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
             + L    +EG  P+ +  ++I+ G  K G ++ A  V+  + E       N + Y  +
Sbjct: 593 ARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCE--FGVSPNVVTYTSL 650

Query: 597 LIEHMKKKTADLVL 610
           +    K    DL L
Sbjct: 651 INGFCKSNRIDLAL 664



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 144/613 (23%), Positives = 247/613 (40%), Gaps = 102/613 (16%)

Query: 65  PNQKTQSPPS-DPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVA 123
           PN K   P    P++       SP  R+  D    +Q     Q  T LS+   V   L+ 
Sbjct: 54  PNPKANFPEKISPESSFPGNSSSPYPRYSQDTVPTSQIH---QETTPLSQ-NHVIDALLC 109

Query: 124 EVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRN-----------NLFRAAD 172
            V    N+P  A ++F  A  Q+G+     +Y  L + L R+           N + + D
Sbjct: 110 HV----NDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETHGHARKLLNRYVSGD 165

Query: 173 QVPE---LMDSQGRIAEMLEILEKMRRNLCKPDVFAY--TAMIRVLAAERNLDACLRVWE 227
             P     +D     A+  +     R       VF Y   A IR    E  +D C     
Sbjct: 166 SDPSPVVFVDHLINCAKRFDFELDHR-------VFNYLLNAYIRANRIENAID-CFNA-- 215

Query: 228 EMKKDLVEADVMAYV----TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
                ++  DV+ +V     L+  L +   +    +L+ +M   GI  D     V++   
Sbjct: 216 -----MICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRAC 270

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
           + EG+V +A +  ++  + G + D G Y+ II  +C+    +   +L E   +    P  
Sbjct: 271 LKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSE 330

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQM----EKLKFSVAADLEKFFEFLVGKEERIMMALD 399
           +T   ++V C   G M    +L  +M    + +   VA  L K +      +  +  AL+
Sbjct: 331 ATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGY----CAQGNLDSALN 386

Query: 400 VFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN------LEVNSL---- 448
           +F ++   G + +   Y++L+      G ++KA  L+ +M+ LN        VNSL    
Sbjct: 387 LFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMK-LNGIPPSVFNVNSLLRGY 445

Query: 449 -----------SFSIAIQCHV--------------ESGDILEACECHNKIIEMSQVPSVA 483
                       F  A+ C V              + G + EAC   + ++    VP+V 
Sbjct: 446 LKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVV 505

Query: 484 AYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           +YN +  G C+ G +D A      ML RD   NV +      Y++ I    + G++EK +
Sbjct: 506 SYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVT------YSILIDGNFKKGDSEKAL 559

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           ++ ++M      P +   + II+G+CK G + EAR    N  E   +    T  Y+ I+ 
Sbjct: 560 DLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMT--YNSIVD 617

Query: 599 EHMKKKTADLVLS 611
             +K+   D  L+
Sbjct: 618 GFIKEGNIDSALA 630



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 117/496 (23%), Positives = 216/496 (43%), Gaps = 77/496 (15%)

Query: 180 SQGRIAEMLEILEKMRRNLCKP-DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           +QG + E L + E+M  N  KP ++   T++++   A+ NLD+ L ++ ++ +D +  + 
Sbjct: 342 AQGNMVEALRLKEEMI-NCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNK 400

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGI-------------------------LIDR 273
           + Y  LI G C  G + +  EL+ +MK NGI                         L D 
Sbjct: 401 VTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDE 460

Query: 274 AI---------YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           A+         Y +++  L   GK+ +AC LL ++V+ G   ++  YN +I G CR    
Sbjct: 461 AVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNM 520

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL------------ 372
           D A  +F   +  DL P+  T + L+    + G  +    L  QM  L            
Sbjct: 521 DMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTI 580

Query: 373 --------KFSVAAD-LEKFFE--FLVG------------KEERIMMALDVFEELKGKGY 409
                   + S A D L+ F E  F+              KE  I  AL V+ E+   G 
Sbjct: 581 INGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGV 640

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           S +V  Y  L+    +   +  AL    +MR   LE++  ++S  I    +  D+  A +
Sbjct: 641 SPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQD 700

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF-KYALTILH 527
              +++E+   P+   YN +  G   +  ++AA++  +  + +    P +   Y   I  
Sbjct: 701 LFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRI--PCDLGTYTTLIDG 758

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           + + G      ++  EM  +G  P+ +    +++G+C  G LE ARK+   + +RK +T 
Sbjct: 759 LLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEM-DRKNMTP 817

Query: 588 ANTIVYDEILIEHMKK 603
           +  ++Y+ ++  + ++
Sbjct: 818 S-VLIYNTLIAGYFRE 832



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 174/387 (44%), Gaps = 6/387 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E   +L+ M      P+V +Y  MI     + N+D    V+ +M    ++ +V+ Y
Sbjct: 483 GKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTY 542

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G  K G   +  +LF +M    I      +  +I GL   G++ +A D LK+ ++
Sbjct: 543 SILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLE 602

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G+      YNSI+ G  +    D A  ++    +  ++P+  T   L+    +  R+D 
Sbjct: 603 EGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDL 662

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
             K   +M +    +  D+  +   + G  K   +  A D+F EL   G S +  +YN +
Sbjct: 663 ALKTRDEMREKGLEL--DVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSM 720

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    ++  ++ AL  + KM    +  +  +++  I   ++ G ++ A + + +++    
Sbjct: 721 ISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGI 780

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           VP +  ++ L  GLC  G+++ A  ++ + +      P+   Y   I    R G  ++  
Sbjct: 781 VPDIITFHVLVNGLCNKGQLENARKILEE-MDRKNMTPSVLIYNTLIAGYFREGNLKEAF 839

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCK 565
            + +EM   G  P++V    +I+G  K
Sbjct: 840 TLHDEMLDRGLVPDDVTYDILINGKFK 866



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 114/275 (41%), Gaps = 34/275 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I   L +  +M      P+V  YT++I        +D  L+  +EM++  +E DV A
Sbjct: 622 EGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTA 681

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK   +    +LF E+ E G+  +R +Y  +I G      +  A    K ++
Sbjct: 682 YSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMI 741

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +     DLG Y ++I GL +  +   A  L+   +   + PD  T + L+      G+++
Sbjct: 742 NDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLE 801

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
           N  K+L +M++   +                                   SV IYN L+ 
Sbjct: 802 NARKILEEMDRKNMT----------------------------------PSVLIYNTLIA 827

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
                G +K+A  L  +M    L  + +++ I I 
Sbjct: 828 GYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILIN 862



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 48/102 (47%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+    ++  +M      PD+  +  ++  L  +  L+   ++ EEM +  +   V+ 
Sbjct: 762 EGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLI 821

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
           Y TLI G  + G +     L  EM + G++ D   Y +LI G
Sbjct: 822 YNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILING 863


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 184/402 (45%), Gaps = 6/402 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+     +L K+ +   +P +  +T +I  L         + ++++M       DV  Y 
Sbjct: 148 RVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYT 207

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           T+I GLCK G       L ++M+E G   +   Y  +I+    + +V +A D+   +   
Sbjct: 208 TIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVK 267

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D+  YNS+I GLC   Q+ +A  L       ++ PD  T N L+    + G++   
Sbjct: 268 GISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEA 327

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYS-SVPIYNILM 419
             +L  M ++   V  D+  +   + G   R  ++ A  +F+ +  KG    V  YNIL+
Sbjct: 328 QGVLKTMTEM--GVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILI 385

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               ++  + +A  LF +M    L  N++S++  I    + G + EA      +     +
Sbjct: 386 NGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNL 445

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P++  Y+ L  G CK G    A  L R  + +  S P    Y + I  +C+SG      +
Sbjct: 446 PNLFTYSILLDGFCKQGYFGKAFRLFR-AMQSTYSKPNLVMYNILIDAMCKSGNLRDARK 504

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           + +E+  +G  PN  I + II+G+CK G L+EA + F N+ E
Sbjct: 505 LFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEE 546



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 108/488 (22%), Positives = 204/488 (41%), Gaps = 42/488 (8%)

Query: 111 LSKLRRV--TPDLVAEVLKVENNPTLAS--KFFHWAGKQKGYKHNFASYNALAYCLSRNN 166
            S L+RV     ++A+++K+   PT+ +     +W  K   +      ++ +     R +
Sbjct: 143 FSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPD 202

Query: 167 LFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVW 226
           ++     +  L    G  A    +L+KM    C+P+V  Y+ +I     +R ++  L ++
Sbjct: 203 VYTYTTIINGLC-KIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIF 261

Query: 227 EEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
             MK   +  D+  Y +LI GLC   +      L  EM+   I+ D   + VL++ +  E
Sbjct: 262 SYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKE 321

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
           GKV +A  +LK + + G   D+  Y+S++ G     +  +A KLF+  +     PD  + 
Sbjct: 322 GKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSY 381

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKG 406
           N L+    ++ R+D                                    A  +F E+  
Sbjct: 382 NILINGYCKVKRIDE-----------------------------------AKQLFNEMIH 406

Query: 407 KGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
           +G +   + YN L+  L ++G +++A  LF  M       N  ++SI +    + G   +
Sbjct: 407 QGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGK 466

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A      +      P++  YN L   +CK G +  A  L  +        P    Y   I
Sbjct: 467 AFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVK-GLQPNAQIYTTII 525

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
             +C+ G  ++ +E    M ++GCPP+E+  + II G   H     A ++   +R++  +
Sbjct: 526 NGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFI 585

Query: 586 TEANTIVY 593
            +  T  +
Sbjct: 586 ADVGTTAW 593


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 116/503 (23%), Positives = 226/503 (44%), Gaps = 32/503 (6%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE 176
           V+   V +VL+ E++   + ++F        +KH   +Y  +   L RNN       + +
Sbjct: 39  VSESHVVKVLRQEHDIVSSLEYFKSLSNSGTFKHTHLTYETMIDKLGRNNEMDGVSYLLQ 98

Query: 177 LMD------------------SQGRIAEM-LEILEKMRRNLCKPDVFAYTAMIRVLAAER 217
            M                    +  + E  L++  ++R   C+P V  Y  ++  L ++ 
Sbjct: 99  QMKLENVPCSQELFQFVIKCYRRSNLGEQGLKMFYRIREFGCEPSVKIYNLVLDALLSQN 158

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
                  ++  MK + +E +V  Y  L+  LC+ G+V    +L  EM   G   D   Y 
Sbjct: 159 LFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYT 218

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
            +I  +   G V KA +L        +   + +YN++I G+C+  +F +A+ L    V  
Sbjct: 219 TVISSMCKLGDVDKARELAMK-----FEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDR 273

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIM 395
            + P+  + + ++ C ++MG ++    +  +M         +++ F   + G     R+ 
Sbjct: 274 GVDPNVISYSTVISCLSDMGNVELSLAVFGRM--FVRGCRPNVQTFTSLIKGFFVRGRVG 331

Query: 396 MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
            A+ ++  +  +G S +V  YN L+  L   G + +A+ ++ +M   ++  N  ++S  I
Sbjct: 332 DAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTII 391

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
               +SGD++ ACE  NK+I     P+V  Y C+   LC++   D A  L+ + + +   
Sbjct: 392 YGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISD-GC 450

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            PT   +   I  +CR+G  E  + VL++M +  C PN    + ++ G+ +     EA  
Sbjct: 451 PPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACG 510

Query: 575 VFTNLRERKLLTEANTIVYDEIL 597
           +   L ERK+  E + + Y+ I+
Sbjct: 511 LIRELEERKV--EFDCVTYNTIM 531



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/425 (21%), Positives = 178/425 (41%), Gaps = 66/425 (15%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           +G   N  SY+ +  CLS                  G +   L +  +M    C+P+V  
Sbjct: 273 RGVDPNVISYSTVISCLS----------------DMGNVELSLAVFGRMFVRGCRPNVQT 316

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           +T++I+       +   + +W  M ++ V  +V+AY TLI GLC  G +     ++ +M+
Sbjct: 317 FTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQME 376

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           ++ I  +   Y  +I G    G +  AC+    +++ G R ++ +Y  ++  LC++  FD
Sbjct: 377 KDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFD 436

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +A+ L +  + D   P   T N  +      GR++    +L QME  K+    ++  + E
Sbjct: 437 QAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQME--KYECLPNIRTYNE 494

Query: 386 FLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            L G  +      A  +  EL+ +        YN +M      G  ++ L L GKM    
Sbjct: 495 LLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNG 554

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           +++++++ +                             +V AY       CK+G++  A+
Sbjct: 555 IKLDTITVN----------------------------TTVNAY-------CKLGKVKTAI 579

Query: 503 MLVRDCLGNVASGPTEFK-----YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
            +    L N+ S   EF+     + + +  +C     E+ +  L+EM + G  PN    +
Sbjct: 580 KV----LDNI-SAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIFPNIATWN 634

Query: 558 AIISG 562
            ++ G
Sbjct: 635 VLVRG 639



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 110/560 (19%), Positives = 219/560 (39%), Gaps = 76/560 (13%)

Query: 62  HYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDL 121
           + L   K ++ P   + FQ          F+   +R++    G Q +    ++R    + 
Sbjct: 95  YLLQQMKLENVPCSQELFQ----------FVIKCYRRSNL--GEQGLKMFYRIREFGCEP 142

Query: 122 VAEVLKVENNPTLASKFFHWAG------KQKGYKHNFASYNALAYCLSRNNLFRAADQVP 175
             ++  +  +  L+   F          K +G + N  +YN L   L +N     A ++ 
Sbjct: 143 SVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLL 202

Query: 176 ELMDSQG----------RIAEMLEI--LEKMRRNLCK--PDVFAYTAMIRVLAAERNLDA 221
             M ++G           I+ M ++  ++K R    K  P V  Y A+I  +  E     
Sbjct: 203 VEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELAMKFEPVVPVYNALIHGVCKECRFKE 262

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
              +  EM    V+ +V++Y T+I  L   G V     +F  M   G   +   +  LI+
Sbjct: 263 AFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIK 322

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
           G    G+VG A  L   ++  G   ++  YN++I GLC     D+A  ++    +D + P
Sbjct: 323 GFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRP 382

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVF 401
           + +T + ++                       F+ + DL              + A + +
Sbjct: 383 NVTTYSTII---------------------YGFAKSGDL--------------VSACETW 407

Query: 402 EELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
            ++   G   +V +Y  ++  L ++    +A  L   M         ++F+  I+    +
Sbjct: 408 NKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRA 467

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF- 519
           G +  A    +++ +   +P++  YN L  GL +      A  L+R+    +     EF 
Sbjct: 468 GRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRE----LEERKVEFD 523

Query: 520 --KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
              Y   +     +G  ++++++L +M   G   + +  +  ++  CK G ++ A KV  
Sbjct: 524 CVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVLD 583

Query: 578 NLRERKLLTEANTIVYDEIL 597
           N+   K    A+ I +  IL
Sbjct: 584 NISAEKEF-RADIITHTIIL 602


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 195/419 (46%), Gaps = 43/419 (10%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+I E L + +KM     +PDV  Y  +I  L    N  A +R+   M +   + +V A
Sbjct: 144 EGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFA 203

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I  LCK  +V     LF EM   GI  D   Y  LI  L    +      LL ++V
Sbjct: 204 YNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMV 263

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           DS    D+  +N+++  LC+  +  +A+ + +  +Q  + P+  T   L         MD
Sbjct: 264 DSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTAL---------MD 314

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILM 419
               LL++M++                         A+ VF+ +  KG   +V  YN L+
Sbjct: 315 GHC-LLSEMDE-------------------------AVKVFDTMVCKGCMPNVISYNTLI 348

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMS 477
               +I  + KA+YLFG+M    L  +++++S  I   CHVE   + +A    ++++  S
Sbjct: 349 NGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVER--LQDAIALFHEMVACS 406

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
           Q+P++  Y  L   LCK   +  AM L++   G+      +    + I  +CR+GE E  
Sbjct: 407 QIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVN-NIAIDGMCRAGELEAA 465

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
            ++ + ++ +G  P+    S +I+G+C+ G L+EA K+F  + E       N  +Y+ I
Sbjct: 466 RDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENG--CTLNGCIYNTI 522



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 129/286 (45%), Gaps = 7/286 (2%)

Query: 172 DQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK 231
           + V + +  +G++ E  ++++KM +   +P+V  YTA++        +D  ++V++ M  
Sbjct: 275 NTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVC 334

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
                +V++Y TLI G CK  R+ +   LF EM    ++ D   Y  LI GL    ++  
Sbjct: 335 KGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQD 394

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A  L  ++V      +L  Y  ++  LC+ +   +A  L +     +L PD    N  + 
Sbjct: 395 AIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAID 454

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGY 409
                G ++    L + +      +  D+  +   + G   R ++  A  +F E+   G 
Sbjct: 455 GMCRAGELEAARDLFSNLSSK--GLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGC 512

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSI 452
           + +  IYN +    L   E  +A+ L  +M  RG + + ++++  +
Sbjct: 513 TLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFV 558


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 143/638 (22%), Positives = 243/638 (38%), Gaps = 119/638 (18%)

Query: 89  ARFITDAFRKNQFQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKG 147
           A  I+D  R     +G +    L + R ++   LV +VL +  NP L  KFF WAG+Q G
Sbjct: 98  AVLISDVIRNTGDGFGHKTQKFLRQFREKLNETLVVDVLSLVKNPELGVKFFIWAGRQIG 157

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPE--LMDSQGRIAEML-EILEKMRRNLC----- 199
           Y H    Y+AL   L         D+VPE  L + +    E+L ++L  + R  C     
Sbjct: 158 YGHTGPVYHALLEVLGCG----GNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLW 213

Query: 200 ---------------KPDVFAYTAMIRVLAAERNLDACLRVWEEM--------------- 229
                          KP    Y A++RV      LD    V  EM               
Sbjct: 214 NVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCF 273

Query: 230 -----------------KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
                            +K+  + D + Y  +I GLC+        +    M+ +  + +
Sbjct: 274 VHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPN 333

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              Y +L+ G + + ++G+   +L  ++  G      I+NS+I   CR   +  AYKL +
Sbjct: 334 VVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLK 393

Query: 333 VTVQDDLAPDFSTVNPLL-----------------------------------------V 351
                   P +   N L+                                          
Sbjct: 394 KMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLAR 453

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YS 410
           C    G+ +  + ++ +M    F            L+    ++  A  +FEE+K      
Sbjct: 454 CLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVP 513

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            V  Y IL+ +  ++G +++A   F +M       N ++++  I  ++++  +  A E  
Sbjct: 514 DVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELF 573

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV---------------ASG 515
             ++    +P+V  Y  L  G CK G+I+ A  +     GN                   
Sbjct: 574 EMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRD 633

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P  F Y   +  +C++ + ++  ++L+ M+ EGC PN ++  A+I G CK G L+EA+ V
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 576 FTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
           FT + ER      N   Y  ++    K K  DL L  L
Sbjct: 694 FTKMSERGY--GPNVYTYSSLIDRLFKDKRLDLALKVL 729



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 174/397 (43%), Gaps = 32/397 (8%)

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           + R L      +    +  EM       D   Y  +I  LC   +V     LF EMK N 
Sbjct: 451 LARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNH 510

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
           ++ D   Y +LI+     G + +A     ++V  G   ++  Y ++I    + ++   A 
Sbjct: 511 VVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSAN 570

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE--- 385
           +LFE+ + +   P+  T   L+    + G+++   ++ A+M     +   D++ +F+   
Sbjct: 571 ELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMR--GNADIPDVDMYFKIDD 628

Query: 386 --------FLVG-------KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVK 429
                   F  G       K  ++  A D+ + +  +G     I Y+ L+    ++G++ 
Sbjct: 629 GNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLD 688

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
           +A  +F KM       N  ++S  I    +   +  A +  ++++E S  P+V  Y  + 
Sbjct: 689 EAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMI 748

Query: 490 KGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
            GLCK+G+ D A     MM  + C  NV +      Y   I    ++G+ +K +E++ +M
Sbjct: 749 DGLCKVGKTDEAYRLMSMMEEKGCHPNVVT------YTAMIDGFGKAGKVDKCLELMRQM 802

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
             +GC PN V    +I+  C  G L++A ++   +++
Sbjct: 803 GAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQ 839



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 171/412 (41%), Gaps = 63/412 (15%)

Query: 173 QVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
           +V  L+ +  ++     + E+M+ N   PDVF YT +I        L    + ++EM +D
Sbjct: 485 KVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRD 544

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
               +V+ Y  LI    K  ++   +ELF  M   G + +   Y  LI+G    G++ KA
Sbjct: 545 GCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKA 604

Query: 293 CDLLKDL--------VDSGYRADLG--------IYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
           C +   +        VD  ++ D G         Y +++ GLC+  +  +A  L +V   
Sbjct: 605 CQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSV 664

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK-----FSVAADLEKFFEFLVGKE 391
           +   P+    + L+    ++G++D    +  +M +       ++ ++ +++ F     K+
Sbjct: 665 EGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLF-----KD 719

Query: 392 ERIMMALDVFEE-LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
           +R+ +AL V    L+     +V IY  ++  L ++G+  +A  L   M            
Sbjct: 720 KRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMME----------- 768

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
                   E G       CH         P+V  Y  +  G  K G++D  + L+R  +G
Sbjct: 769 --------EKG-------CH---------PNVVTYTAMIDGFGKAGKVDKCLELMRQ-MG 803

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
                P    Y + I H C +G  +   ++L+EM Q   P +      +I G
Sbjct: 804 AKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEG 855



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 96/480 (20%), Positives = 200/480 (41%), Gaps = 50/480 (10%)

Query: 113 KLRRVTPDLVAEVLKVEN--NPTLASKFFHWAGK--QKGYKHNFASYNALAYCLSRNNLF 168
           K   V PD+    + +++     L  +   W  +  + G   N  +Y AL +   +    
Sbjct: 507 KSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKM 566

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
            +A+++ E+M S+G                C P+V  YTA+I        ++   +++  
Sbjct: 567 SSANELFEMMLSEG----------------CIPNVVTYTALIDGHCKSGQIEKACQIYAR 610

Query: 229 MK--KDLVEAD--------------VMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           M+   D+ + D              +  Y  L+ GLCK  +V    +L   M   G   +
Sbjct: 611 MRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPN 670

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
             +Y  LI+G    GK+ +A  +   + + GY  ++  Y+S+I  L + K+ D A K+  
Sbjct: 671 HIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLS 730

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK-----FSVAADLEKFFEFL 387
             +++  AP+      ++    ++G+ D  ++L++ ME+        +  A ++ F    
Sbjct: 731 RMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGF---- 786

Query: 388 VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
            GK  ++   L++  ++  KG + +   Y +L+      G +  A  L  +M+      +
Sbjct: 787 -GKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKH 845

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
              +   I+    + + + +    ++I E   VP + AY  L    CK G ++ A+ L +
Sbjct: 846 MAGYRKVIEGF--NREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHK 903

Query: 507 DCLGNVA-SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
                 + S   +  Y+  I  +  + + +K  E+  +M + G  P   I   ++ G+ +
Sbjct: 904 XMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIR 963



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 148/333 (44%), Gaps = 6/333 (1%)

Query: 166 NLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV 225
           N+F     V  L  +  ++ E  ++L+ M    C+P+   Y A+I        LD    V
Sbjct: 635 NIFTYGALVDGLCKAH-KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285
           + +M +     +V  Y +LI  L K  R+    ++   M EN    +  IY  +I+GL  
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
            GK  +A  L+  + + G   ++  Y ++I G  +  + DK  +L         AP+F T
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL- 404
              L+  C   G +D+  +LL +M++  +     +  + + + G     +++L + +E+ 
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYW--PKHMAGYRKVIEGFNREFIISLGLLDEIA 871

Query: 405 KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN--LEVNSLSFSIAIQCHVESGD 462
           +      +P Y IL+ +  + G ++ AL L   M         +   +S  I+    +  
Sbjct: 872 ENVAVPIIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSAADKDLYSSLIESLSLASK 931

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
           + +A E +  +I+   +P ++ +  L KGL +I
Sbjct: 932 VDKAFELYADMIKRGGIPELSIFFYLVKGLIRI 964



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 35/177 (19%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK---------- 231
           G++ + LE++ +M    C P+   Y  +I    A   LD   ++ +EMK+          
Sbjct: 790 GKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGY 849

Query: 232 ------------------DLVEADVM-----AYVTLIMGLCKGGRVVRGHELFREMKE-- 266
                             D +  +V      AY  LI   CK GR+    EL + M    
Sbjct: 850 RKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKXMSSCT 909

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +    D+ +Y  LIE L    KV KA +L  D++  G   +L I+  ++ GL R+ +
Sbjct: 910 SYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINR 966


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 128/478 (26%), Positives = 211/478 (44%), Gaps = 31/478 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLE-------------- 189
           ++KG   +  +YN +   L R      A ++ +LMD +G +A++                
Sbjct: 263 EEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRC 322

Query: 190 -----ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
                +LE+M     KP   AYTA+I     + +     RV EEM    V+ ++  Y  L
Sbjct: 323 TEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNAL 382

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + G+CK G + +   L  EM   GI  D   Y  +IEG + E    +  DLL ++  S  
Sbjct: 383 VKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNL 442

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
                    II GLCR    + A ++FE+ V   + P+      L+    + GR     +
Sbjct: 443 VPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVR 502

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
           +L  M+K    V  D+  +   ++G  K  ++  A D   E+  +G   +V  Y  L+  
Sbjct: 503 ILKVMDKK--GVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHG 560

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
             + GE++ A   F +M G  +  N +  +  I  + + G   EA      ++  S  P 
Sbjct: 561 YCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPD 620

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           V  Y+ L  GL + G++  AM L+ + L  G V   P  F Y   I   C+ G   K  +
Sbjct: 621 VRTYSALIHGLLRNGKLQGAMELLSEFLEKGLV---PDVFTYNSIISGFCKQGGIGKAFQ 677

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +   M Q+G  PN +  +A+I+G+CK G +E AR++F  +  + L    N + Y  I+
Sbjct: 678 LHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGL--AHNAVTYATII 733



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 196/420 (46%), Gaps = 9/420 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G I +   + E M     KP+   YT +I+    E      +R+ + M K  V+ DV+ 
Sbjct: 459 HGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLC 518

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y ++I+GLCK  ++    +   EM E G+  +   YG LI G    G++  A    K+++
Sbjct: 519 YNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEML 578

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   +  +  ++I G C+     +A  +F   +   + PD  T + L+      G++ 
Sbjct: 579 GCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQ 638

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
              +LL++   L+  +  D+  +   + G  K+  I  A  + E +  KG S ++  YN 
Sbjct: 639 GAMELLSEF--LEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNA 696

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L + GE+++A  LF  + G  L  N+++++  I  + +SG++ +A    +++    
Sbjct: 697 LINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKG 756

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P    Y+ L  G  K G  + A+ L  + +    +  +     +     C+SG+  + 
Sbjct: 757 VPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMD--GFCKSGKVIEA 814

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            ++L +M  +   P+ V  + +I   CK G L+EA + F ++++R L+   N + Y  +L
Sbjct: 815 NQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLM--PNALTYTALL 872



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 178/397 (44%), Gaps = 16/397 (4%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           DV+ YT +I       N     R+  EM++      ++ Y  +I GLC+ G V    EL 
Sbjct: 235 DVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELK 294

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           + M + G++ D   Y +LI+G   + +  +A  +L+++   G +     Y ++I G  R 
Sbjct: 295 KLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQ 354

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
               +A+++ E  +   +  +  T N L+    + G M+    LL +M  +   +  D +
Sbjct: 355 GDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEM--IMVGIKPDTQ 412

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIY---NILMGALLEIGEVKKALYLFG 436
            +   + G  KE+      D+  E+K      VP      +++  L   G ++ A  +F 
Sbjct: 413 TYNNMIEGYLKEQNTSRVKDLLSEMKKSNL--VPTAYTCGMIINGLCRHGSIEDASRVFE 470

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            M  L ++ N++ ++  I+ HV+ G   EA      + +    P V  YN +  GLCK  
Sbjct: 471 IMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSR 530

Query: 497 EIDAAMMLVRDCLGNVAS---GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           +++ A    +D L  +      P  + Y   I   C+SGE +       EM   G  PN+
Sbjct: 531 KMEEA----KDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPND 586

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           V+C+A+I G CK G+  EA  +F  +  R +  +  T
Sbjct: 587 VVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRT 623



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 109/453 (24%), Positives = 201/453 (44%), Gaps = 24/453 (5%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G K N  +Y AL +   ++   + AD+  + M   G IA               P+  
Sbjct: 544 ERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCG-IA---------------PNDV 587

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
             TA+I     E +      ++  M    V  DV  Y  LI GL + G++    EL  E 
Sbjct: 588 VCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEF 647

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            E G++ D   Y  +I G   +G +GKA  L + +   G   ++  YN++I GLC+  + 
Sbjct: 648 LEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEI 707

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           ++A +LF+      LA +  T   ++    + G +   F+L  +M  LK  V  D   + 
Sbjct: 708 ERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEM-TLK-GVPPDSFVYS 765

Query: 385 EFLVG--KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
             + G  KE     AL +F E   KG++S    N LM    + G+V +A  L   M   +
Sbjct: 766 ALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKH 825

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           ++ + ++++I I  H ++G + EA +    + + + +P+   Y  L  G    G      
Sbjct: 826 VKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMF 885

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            L  + +      P    +++ I    + G+  K ++++++M ++G   ++ +C  +I  
Sbjct: 886 ALFDEMIAKDIE-PDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDP 944

Query: 563 MCKHGTLEEARKVFTNLRERKL---LTEANTIV 592
           +C+   + E  KV   + E+ L   L   +T+V
Sbjct: 945 LCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLV 977



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 3/210 (1%)

Query: 168  FRAADQVPELMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLR 224
            F +   +  LMD     G++ E  ++LE M     KPD   YT +I        L    +
Sbjct: 792  FASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQ 851

Query: 225  VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
             + +M+K  +  + + Y  L+ G    GR      LF EM    I  D   + V+I+  +
Sbjct: 852  FFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHL 911

Query: 285  GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
             EG   K   L+ D++  G      + + +I  LCR +   +  K+ E   +  L    +
Sbjct: 912  KEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLA 971

Query: 345  TVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
            T + L+ C  + G+MD   ++L  M + K+
Sbjct: 972  TCSTLVRCFHKAGKMDGAARVLKSMVRFKW 1001


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 129/522 (24%), Positives = 221/522 (42%), Gaps = 64/522 (12%)

Query: 104 GPQVVTELSKL-RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAY-C 161
           GP +  +L+     VTP++   VL+   +P +A  FF WAG + G++HN       AY C
Sbjct: 27  GPYLCRDLAGYASTVTPEVAGRVLQQVEDPDVAWTFFQWAGNKPGFQHN-------AYTC 79

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221
               N F  A           R  E   +L++    LC P+   YT +I        +D 
Sbjct: 80  AVLLNAFVKAK----------RHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQ 129

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
              + +EMK+  V+ DV+ + TLI GLC+ GR+    E F+ M E     +   Y  ++ 
Sbjct: 130 AFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEE-CSPNVITYNTVVN 188

Query: 282 GLVGEGKVGKACDLLKDL-----VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
           GL    ++ +A +L  D+        G   D+  Y+++I  LC+ ++ DKAY+ F+    
Sbjct: 189 GLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRA 248

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV-AADLEKFFEFLVGKEERIM 395
              AP+  T + L+    ++ R     +LL  M++  F +   D       L   +E+  
Sbjct: 249 VGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQ-E 307

Query: 396 MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
            A   FE L   G   +V  YN+ +  L + G V +A  +  +M    +  + +++S  I
Sbjct: 308 KACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSII 367

Query: 455 QCHVESG------DIL-----------------------------EACECHNKIIEMSQV 479
               ++G      D+                              EA   H  ++    +
Sbjct: 368 DGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFI 427

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P +  YN L   +C    +++A+ +    +      P    YA  I  +CR+   ++  E
Sbjct: 428 PGLQTYNVLMDCVCGADSVESALEIYHK-MKRKKRQPDCNTYAPLIQCLCRARRVDEAKE 486

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            L+ M  +   PN  IC A++  +CK G ++EA  V  N+ E
Sbjct: 487 FLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVE 528



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 196/442 (44%), Gaps = 47/442 (10%)

Query: 183 RIAEMLEILEKMRRNL-----CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           RI E LE+ + M +       C+PDV +Y+ +I  L   + +D     ++ M+      +
Sbjct: 195 RIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPN 254

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ Y +LI GLCK  R     EL   MKE G  I+   +  ++  L    +  KAC   +
Sbjct: 255 VVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFE 314

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            L+ SG + ++  YN  + GLC+  + D+AY++    V+  + PD  T + ++    + G
Sbjct: 315 RLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAG 374

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGY-SSVPI 414
           RMD    +  +M  +          F   L G  E  +   A  V E++   G+   +  
Sbjct: 375 RMDKADDVFTRM--MVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQT 432

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YN+LM  +     V+ AL ++ KM+    + +  +++  IQC   +  + EA E  + + 
Sbjct: 433 YNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVME 492

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL------------------------- 509
             + VP+ A  + L + LCK GE+D A  ++ + +                         
Sbjct: 493 ADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWE 552

Query: 510 ---------GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
                    G VA   T   Y+L +  +C++G+ ++ +EV+ +M  +G  P+E    A++
Sbjct: 553 AASKLLRSPGFVADAAT---YSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVL 609

Query: 561 SGMCKHGTLEEARKVFTNLRER 582
             +C    +E A   F  +  R
Sbjct: 610 RSLCGLDRVESAIAEFEKMASR 631



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 108/513 (21%), Positives = 183/513 (35%), Gaps = 114/513 (22%)

Query: 104 GPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLS 163
            P VVT  S        L+  + KV+          H   K+KG+  N   +NA+ + L 
Sbjct: 252 APNVVTYSS--------LIDGLCKVDRPSECLELLLHM--KEKGFGINIIDFNAMLHALW 301

Query: 164 RNNLFRAADQVPE-LMDS------------------QGRIAEMLEILEKMRRNLCKPDVF 204
           +N+    A Q  E L+ S                   GR+ E   IL +M  +   PDV 
Sbjct: 302 KNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVI 361

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y+++I                                    G CK GR+ +  ++F  M
Sbjct: 362 TYSSIID-----------------------------------GFCKAGRMDKADDVFTRM 386

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
             +  +     +  L+ G     K  +A  + +D+V++G+   L  YN ++  +C     
Sbjct: 387 MVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSV 446

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           + A +++    +    PD +T  PL+ C     R+D   + L  ME       AD     
Sbjct: 447 ESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVME-------AD----- 494

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGL 441
                                    + VP   I + L+  L + GEV +A  +   +   
Sbjct: 495 -------------------------NVVPNGAICHALVEVLCKQGEVDEACSVLDNV--- 526

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ-VPSVAAYNCLTKGLCKIGEIDA 500
            +EV         +  VE   + +  E  +K++     V   A Y+     +CK G+ D 
Sbjct: 527 -VEVGCQPLGETFKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDE 585

Query: 501 AMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           A+ ++      V  G  P E  Y   +  +C     E  I    +M   GC P  V  + 
Sbjct: 586 AVEVIEQ---MVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTL 642

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           +I   C     +EA ++F  +       +A T+
Sbjct: 643 LIGEACSADMADEAFRIFEAMVAAGFTPQAQTM 675



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 91/240 (37%), Gaps = 30/240 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRN----------NLFRAADQVP---------ELMDSQGRI 184
           K+K  + +  +Y  L  CL R           ++  A + VP         E++  QG +
Sbjct: 457 KRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEV 516

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE----ADVMA 240
            E   +L+ +    C+P         ++L  E  L    + WE   K L      AD   
Sbjct: 517 DEACSVLDNVVEVGCQP----LGETFKILVEELYLR---KKWEAASKLLRSPGFVADAAT 569

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y   +  +CK G+     E+  +M   G+  D   Y  ++  L G  +V  A    + + 
Sbjct: 570 YSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMA 629

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G    L  Y  +IG  C     D+A+++FE  V     P   T+  L  C  + G  D
Sbjct: 630 SRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAGYQD 689


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 208/444 (46%), Gaps = 14/444 (3%)

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
           ++ + ++M  +  + +      +I      R +++   V+ ++ K   + D++ Y TLI 
Sbjct: 68  VIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIR 127

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC  G+V         +   GI +D   YG LI GL   G+ G A  LL+ +     R 
Sbjct: 128 GLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRP 187

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D+ +YN+II GLC+ K    A+ L+    +  + P+  T   L+     +G++D  F LL
Sbjct: 188 DVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLL 247

Query: 367 AQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
            +M  LK +V  ++  F   + G  KE ++  A  +   +  +G    V  YN LM    
Sbjct: 248 NEM-VLK-NVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYF 305

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
            + E  KA  +F  M  + +  +  S+S+ I    +   + EA +    +   + +P V 
Sbjct: 306 LVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVV 365

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           AY+ L  GLCK G I++A+  V D + +    P    Y   I  +C+S + +K I +L +
Sbjct: 366 AYSSLIDGLCKSGRINSALKYV-DEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKK 424

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           +  +G   N    + ++ G+CK G L +A+KVF +L  +      + + Y  ++    K+
Sbjct: 425 IKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKG--HNVDVVTYSIMINGLCKE 482

Query: 604 KTADLVLSGLKFFGLESKLKAKGC 627
              D  L+      L SK++ KGC
Sbjct: 483 SLFDEALT------LLSKMEDKGC 500



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 187/407 (45%), Gaps = 15/407 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G++ E L   +++     K D  +Y  +I  L         LR+  +++ ++   DV+ 
Sbjct: 132 NGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVM 191

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I GLCK   V    +L+ EM E  +  +   Y  LI G    G++ KA  LL ++V
Sbjct: 192 YNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMV 251

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL---VCCAEMG 357
                 ++  +N+++ GLC+  +  +A  L  V +++ + PD  T N L+       E G
Sbjct: 252 LKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAG 311

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGY-SSVPI 414
           +  N F ++AQM      V  D+  +   + G  +  M+  A+D+FE ++ +     V  
Sbjct: 312 KAKNVFNIMAQM-----GVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVA 366

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y+ L+  L + G +  AL    +M       N ++++  I    +S  + +A     KI 
Sbjct: 367 YSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIK 426

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           +     ++  YN L  GLCK G +  A  + +D L           Y++ I  +C+    
Sbjct: 427 DQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMK-GHNVDVVTYSIMINGLCKESLF 485

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           ++ + +L++M  +GC P+ +    II+   +    ++A K+   LRE
Sbjct: 486 DEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKL---LRE 529



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 152/334 (45%), Gaps = 22/334 (6%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+V  YT++I        LD    +  EM    V  +V  + TL+ GLCK G++     L
Sbjct: 222 PNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSL 281

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              M + G+  D   Y  L++G     + GKA ++   +   G   D+  Y+ +I GL +
Sbjct: 282 VAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSK 341

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-------LK 373
           +K  D+A  LFE    +++ PD    + L+    + GR+++  K + +M         + 
Sbjct: 342 MKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVIT 401

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKAL 432
           ++   D        + K  ++  A+ + +++K +G  +++  YNIL+  L + G +  A 
Sbjct: 402 YTSLIDA-------LCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQ 454

Query: 433 YLFGK--MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
            +F    M+G N++V  +++SI I    +     EA    +K+ +   VP   AY  +  
Sbjct: 455 KVFQDLLMKGHNVDV--VTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIIN 512

Query: 491 GLCKIGEIDAAMMLVR---DCLGNVASGPTEFKY 521
              +    D A  L+R   DC+    +G T  +Y
Sbjct: 513 AFFEKDMNDKAEKLLREMIDCVDYKDNGDTCDQY 546



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 93/186 (50%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + E +++ E MR     PDV AY+++I  L     +++ L+  +EM       +V+ Y +
Sbjct: 345 LDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTS 404

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           LI  LCK  +V +   L +++K+ GI  +   Y +L++GL  +G++  A  + +DL+  G
Sbjct: 405 LIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKG 464

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
           +  D+  Y+ +I GLC+   FD+A  L          PD      ++    E    D   
Sbjct: 465 HNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAE 524

Query: 364 KLLAQM 369
           KLL +M
Sbjct: 525 KLLREM 530



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 97/194 (50%), Gaps = 3/194 (1%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           L+   G+   +  I+ +M       DV +Y+ MI  L+  + LD  + ++E M+ + V  
Sbjct: 306 LVKEAGKAKNVFNIMAQMGVTC---DVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIP 362

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           DV+AY +LI GLCK GR+    +   EM + G   +   Y  LI+ L    +V KA  LL
Sbjct: 363 DVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALL 422

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
           K + D G +A++  YN ++ GLC+  +   A K+F+  +      D  T + ++    + 
Sbjct: 423 KKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKE 482

Query: 357 GRMDNFFKLLAQME 370
              D    LL++ME
Sbjct: 483 SLFDEALTLLSKME 496



 Score = 42.4 bits (98), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/119 (21%), Positives = 57/119 (47%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ + + +L+K++    + +++ Y  ++  L  +  L    +V++++       DV+ Y 
Sbjct: 414 QVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYS 473

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +I GLCK         L  +M++ G + D   Y  +I     +    KA  LL++++D
Sbjct: 474 IMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREMID 532


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 212/458 (46%), Gaps = 36/458 (7%)

Query: 135 ASKFFHWAG--KQKGYKH--NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEI 190
           A +  H  G  +Q    H  +F +Y  L + LS+                 GR+ + +++
Sbjct: 128 AGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSK----------------AGRLRDAVQV 171

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
           L++M      PD    T +++ L     +D    + EEM    + A+ + Y  L+ GLCK
Sbjct: 172 LQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCK 231

Query: 251 GGRVVRGHELF-REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
             R+     L   E+   G   D   Y  +I+GL   G++  A D+ +++  +       
Sbjct: 232 CERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAI--- 288

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            YNS+IGG CR    D+A +L    V D+ APD  T   L+    +MGR+D+ ++L  QM
Sbjct: 289 TYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQM 348

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
              K S   D+  F   + G   E R+  AL++ EE+  +G   ++  YN ++    +  
Sbjct: 349 VANKLS--PDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSN 406

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI-IEMSQVP-SVAA 484
           +V+KA  L    R      N+++++I +     +G   +A +  +++  E    P SVA 
Sbjct: 407 QVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAM 466

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
           Y  +   LC+ G  D A+    + +  G V   P    +A  +  +C++ + ++  E+L 
Sbjct: 467 YAIILDALCRDGRTDDAVQFYEEMIQRGYV---PAAATFATVVFALCKAHQPQQAHELLE 523

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           EM + G  P    C A++S  C+ G +++A ++ + LR
Sbjct: 524 EMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELR 561



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 174/412 (42%), Gaps = 42/412 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+   L +  +M  +   PD   YT ++  L+    L   ++V +EM       D    
Sbjct: 129 GRLRHALGVYRQMN-DAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTL 187

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL-KDLV 300
             ++  LC G RV    EL  EM   G+  +   Y  L++GL    ++ +A  LL  ++ 
Sbjct: 188 TVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVT 247

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G+  D+  Y+++I GLC+  +   A  +FE   +   AP   T N L+      G MD
Sbjct: 248 RRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFE---EMSCAPTAITYNSLIGGYCRAGDMD 304

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
              +LL +M  +  + A D                                V  Y  LM 
Sbjct: 305 EAIRLLGKM--VDDNCAPD--------------------------------VITYTTLMS 330

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           A  ++G +  A  LF +M    L  + ++F+  +      G + +A E   +I      P
Sbjct: 331 AFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPP 390

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           ++  YNC+  G CK  ++  A  LV D   +    P    Y + +   CR+G  ++ ++ 
Sbjct: 391 TIYTYNCVVDGYCKSNQVRKAEELVAD-FRSRGFVPNTVTYNILVAGCCRAGRTDQALQY 449

Query: 541 LNEMTQEG--CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           L+++  EG  CP +  + + I+  +C+ G  ++A + +  + +R  +  A T
Sbjct: 450 LDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAAT 501



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 192/409 (46%), Gaps = 14/409 (3%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +L+++R     PD      ++  L   R+    + ++++M + L   +   Y  LI  LC
Sbjct: 33  LLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDKMAE-LGAVNHTTYYNLIHPLC 91

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K   +     L  +MK  G+     ++ V+I GL   G++  A  + + + D+ +  D  
Sbjct: 92  KARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDA-HPPDFL 150

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            Y  ++ GL +  +   A ++ +  V     PD +T+  ++       R+D+  +L+ +M
Sbjct: 151 TYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEM 210

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALDVF-EELKGKGYS-SVPIYNILMGALLEI 425
             L   +AA+   +   + G  K ER+  A+ +   E+  +G++  +  Y+ ++  L + 
Sbjct: 211 --LHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKA 268

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G ++ A+ +F +M   +    +++++  I  +  +GD+ EA     K+++ +  P V  Y
Sbjct: 269 GRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITY 325

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
             L    CK+G +D A  L +  + N  S P    +   +  +C  G  E  +E+L E+T
Sbjct: 326 TTLMSAFCKMGRLDDAYELFQQMVANKLS-PDVVTFTSLVDGLCGEGRMEDALELLEEIT 384

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           + GCPP     + ++ G CK   + +A ++  + R R  +   NT+ Y+
Sbjct: 385 RRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFV--PNTVTYN 431



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 170/376 (45%), Gaps = 7/376 (1%)

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  +I  L   R LD  + +  +MK   +    + +  +I GLC+ GR+     ++R+M 
Sbjct: 83  YYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMN 142

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           +     D   Y  L+ GL   G++  A  +L+++V + +  D      ++  LC   + D
Sbjct: 143 D-AHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVD 201

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
            A +L E  +   +A +  T + L+    +  R+D    LL   E  +     D+  +  
Sbjct: 202 DARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLG-EVTRRGFTPDIVTYST 260

Query: 386 FLVG--KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
            + G  K  R+  A+D+FEE+      +   YN L+G     G++ +A+ L GKM   N 
Sbjct: 261 VIDGLCKAGRLRDAVDIFEEMSCA--PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNC 318

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             + ++++  +    + G + +A E   +++     P V  +  L  GLC  G ++ A+ 
Sbjct: 319 APDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALE 378

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L+ + +      PT + Y   +   C+S +  K  E++ +    G  PN V  + +++G 
Sbjct: 379 LLEE-ITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGC 437

Query: 564 CKHGTLEEARKVFTNL 579
           C+ G  ++A +    L
Sbjct: 438 CRAGRTDQALQYLDQL 453


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 199/413 (48%), Gaps = 9/413 (2%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           LE+LE+M+     P    +T++I    A+ N+   LR+ EEM       +++   +L+ G
Sbjct: 275 LELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKG 334

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            C  G +     LF ++ E+G+  ++  Y VLIEG    G + KA +L   +  +G    
Sbjct: 335 YCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPS 394

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +   NS++ G  +   +++A KLF+  V   +A  F T N ++    + G+MD    LL 
Sbjct: 395 VFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIF-TYNIMMSWLCKGGKMDEACSLLD 453

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
            M  +   +  ++  + + ++G  ++  + MA  VF ++  +    +V  Y+IL+    +
Sbjct: 454 NM--VNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFK 511

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G+ +KAL LF +M  LN+     +F+  I    + G + EA +     +E   +PS   
Sbjct: 512 KGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMT 571

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN +  G  K G ID+A+ + R+ +      P    Y   I   C+S   +  ++  +EM
Sbjct: 572 YNSIVDGFIKEGNIDSALAVYRE-MCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEM 630

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            ++G   +    SA+I G CK   +E A+ +F  L E  L    N IVY+ ++
Sbjct: 631 REKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGL--SPNRIVYNSMI 681



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 195/434 (44%), Gaps = 17/434 (3%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           I E+ ++  KM       D F    M+R    E  ++     + E K+  V+ D  AY  
Sbjct: 201 IGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSI 260

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I  +CK      G EL  EMKE G +   A +  +I   V +G + +A  L +++++ G
Sbjct: 261 IIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCG 320

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
              +L +  S++ G C     D A  LF    +D L P+  T + L+  C   G ++   
Sbjct: 321 KPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKAS 380

Query: 364 KLLAQMEKLK------FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNI 417
           +L  QM KL       F+V + L  + +  + +E     A  +F+E    G +++  YNI
Sbjct: 381 ELYTQM-KLNGIPPSVFNVNSLLRGYLKAPLWEE-----ASKLFDEAVDCGVANIFTYNI 434

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           +M  L + G++ +A  L   M    +  N +S++  I  H   G++  A    + ++   
Sbjct: 435 MMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARD 494

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG-NVASGPTEFKYALTILHVCRSGEAEK 536
             P+V  Y+ L  G  K G+ + A+ L    L  N+A  PT+F +   I  +C+ G+  +
Sbjct: 495 LKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIA--PTDFTFNTIINGLCKVGQMSE 552

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
             + L    +EG  P+ +  ++I+ G  K G ++ A  V+  + E       N + Y  +
Sbjct: 553 ARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCE--FGVSPNVVTYTSL 610

Query: 597 LIEHMKKKTADLVL 610
           +    K    DL L
Sbjct: 611 INGFCKSNRIDLAL 624



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 117/496 (23%), Positives = 216/496 (43%), Gaps = 77/496 (15%)

Query: 180 SQGRIAEMLEILEKMRRNLCKP-DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           +QG + E L + E+M  N  KP ++   T++++   A+ NLD+ L ++ ++ +D +  + 
Sbjct: 302 AQGNMVEALRLKEEMI-NCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNK 360

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGI-------------------------LIDR 273
           + Y  LI G C  G + +  EL+ +MK NGI                         L D 
Sbjct: 361 VTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDE 420

Query: 274 AI---------YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           A+         Y +++  L   GK+ +AC LL ++V+ G   ++  YN +I G CR    
Sbjct: 421 AVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNM 480

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL------------ 372
           D A  +F   +  DL P+  T + L+    + G  +    L  QM  L            
Sbjct: 481 DMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTI 540

Query: 373 --------KFSVAAD-LEKFFE--FLVG------------KEERIMMALDVFEELKGKGY 409
                   + S A D L+ F E  F+              KE  I  AL V+ E+   G 
Sbjct: 541 INGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGV 600

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           S +V  Y  L+    +   +  AL    +MR   LE++  ++S  I    +  D+  A +
Sbjct: 601 SPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQD 660

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF-KYALTILH 527
              +++E+   P+   YN +  G   +  ++AA++  +  + +    P +   Y   I  
Sbjct: 661 LFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRI--PCDLGTYTTLIDG 718

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           + + G      ++  EM  +G  P+ +    +++G+C  G LE ARK+   + +RK +T 
Sbjct: 719 LLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEM-DRKNMTP 777

Query: 588 ANTIVYDEILIEHMKK 603
           +  ++Y+ ++  + ++
Sbjct: 778 S-VLIYNTLIAGYFRE 792



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 136/586 (23%), Positives = 237/586 (40%), Gaps = 91/586 (15%)

Query: 86  SPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQ 145
           SP  R+  D    +Q     Q  T LS+   V   L+  V    N+P  A ++F  A  Q
Sbjct: 36  SPYPRYSQDTVPTSQIH---QETTPLSQ-NHVIDALLCHV----NDPQSALRYFKRAETQ 87

Query: 146 KGYKHNFASYNALAYCLSRN-----------NLFRAADQVPE---LMDSQGRIAEMLEIL 191
           +G+     +Y  L + L R+           N + + D  P     +D     A+  +  
Sbjct: 88  RGFIRGVDAYCVLLHILMRSPETHGHARKLLNRYVSGDSDPSPVVFVDHLINCAKRFDFE 147

Query: 192 EKMRRNLCKPDVFAY--TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV----TLI 245
              R       VF Y   A IR    E  +D C          ++  DV+ +V     L+
Sbjct: 148 LDHR-------VFNYLLNAYIRANRIENAID-CFNA-------MICQDVIPWVPYMNILL 192

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
             L +   +    +L+ +M   GI  D     V++   + EG+V +A +  ++  + G +
Sbjct: 193 TALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVK 252

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D G Y+ II  +C+    +   +L E   +    P  +T   ++V C   G M    +L
Sbjct: 253 LDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRL 312

Query: 366 LAQM----EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMG 420
             +M    + +   VA  L K +      +  +  AL++F ++   G + +   Y++L+ 
Sbjct: 313 KEEMINCGKPMNLVVATSLMKGY----CAQGNLDSALNLFNKITEDGLFPNKVTYSVLIE 368

Query: 421 ALLEIGEVKKALYLFGKMRGLN------LEVNSL---------------SFSIAIQCHV- 458
                G ++KA  L+ +M+ LN        VNSL                F  A+ C V 
Sbjct: 369 GCCNSGNIEKASELYTQMK-LNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVA 427

Query: 459 -------------ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
                        + G + EAC   + ++    VP+V +YN +  G C+ G +D A  + 
Sbjct: 428 NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVF 487

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
            D L      P    Y++ I    + G++EK +++ ++M      P +   + II+G+CK
Sbjct: 488 SDMLARDLK-PNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCK 546

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLS 611
            G + EAR    N  E   +    T  Y+ I+   +K+   D  L+
Sbjct: 547 VGQMSEARDKLKNFLEEGFIPSCMT--YNSIVDGFIKEGNIDSALA 590



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 174/387 (44%), Gaps = 6/387 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E   +L+ M      P+V +Y  MI     + N+D    V+ +M    ++ +V+ Y
Sbjct: 443 GKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTY 502

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G  K G   +  +LF +M    I      +  +I GL   G++ +A D LK+ ++
Sbjct: 503 SILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLE 562

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G+      YNSI+ G  +    D A  ++    +  ++P+  T   L+    +  R+D 
Sbjct: 563 EGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDL 622

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
             K   +M +    +  D+  +   + G  K   +  A D+F EL   G S +  +YN +
Sbjct: 623 ALKTRDEMREKGLEL--DVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSM 680

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    ++  ++ AL  + KM    +  +  +++  I   ++ G ++ A + + +++    
Sbjct: 681 ISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGI 740

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           VP +  ++ L  GLC  G+++ A  ++ + +      P+   Y   I    R G  ++  
Sbjct: 741 VPDIITFHVLVNGLCNKGQLENARKILEE-MDRKNMTPSVLIYNTLIAGYFREGNLKEAF 799

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCK 565
            + +EM   G  P++V    +I+G  K
Sbjct: 800 TLHDEMLDRGLVPDDVTYDILINGKFK 826



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 114/275 (41%), Gaps = 34/275 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I   L +  +M      P+V  YT++I        +D  L+  +EM++  +E DV A
Sbjct: 582 EGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTA 641

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK   +    +LF E+ E G+  +R +Y  +I G      +  A    K ++
Sbjct: 642 YSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMI 701

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +     DLG Y ++I GL +  +   A  L+   +   + PD  T + L+      G+++
Sbjct: 702 NDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLE 761

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
           N  K+L +M++   +                                   SV IYN L+ 
Sbjct: 762 NARKILEEMDRKNMT----------------------------------PSVLIYNTLIA 787

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
                G +K+A  L  +M    L  + +++ I I 
Sbjct: 788 GYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILIN 822



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 48/102 (47%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+    ++  +M      PD+  +  ++  L  +  L+   ++ EEM +  +   V+ 
Sbjct: 722 EGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLI 781

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
           Y TLI G  + G +     L  EM + G++ D   Y +LI G
Sbjct: 782 YNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILING 823


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 202/425 (47%), Gaps = 8/425 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E     E+M++   KPD  A +A+I     E ++D  LR+ + M    +  +++ Y 
Sbjct: 224 RMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYN 283

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI GLCK G++ +  E+ + M   G   +   + +LIEG   E  +G+A +LL ++   
Sbjct: 284 VLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKR 343

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
                   Y ++I GLC  K    A KL E      L P+    + L++  A  GR++  
Sbjct: 344 NLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEA 403

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYSSVPI-YNILM 419
            +LL  M      VA D+  +   +  + K  ++  A     E++G+G     + +   +
Sbjct: 404 RRLLDGMS--CSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFI 461

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               + G++ +A   F +M    L  N+  +++ I  H ++G+++EA      +  +  +
Sbjct: 462 LGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVL 521

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P V   +    GL K G +  A+ +  + L      P  F Y+  I   C+ GE EK  E
Sbjct: 522 PDVQTCSAFIHGLLKNGRVQEALKVFSE-LKEKGLVPDVFTYSSLISGFCKQGEVEKAFE 580

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           + +EM  +G  PN  I +A++ G+CK G ++ ARK+F  + E+ L  E +++ Y  ++  
Sbjct: 581 LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGL--EPDSVTYSTMIDG 638

Query: 600 HMKKK 604
           + K +
Sbjct: 639 YCKSE 643



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 205/450 (45%), Gaps = 46/450 (10%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+GRI E   +L+ M  +   PD+F Y A+I  L+    ++       E++   ++ D +
Sbjct: 396 SEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAV 455

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            +   I+G  K G++    + F EM ++G++ +  +Y VLI G    G + +A  + + L
Sbjct: 456 TFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHL 515

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   D+   ++ I GL +  +  +A K+F    +  L PD  T + L+         
Sbjct: 516 HALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLIS-------- 567

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
                         F    ++EK FE              + +E+  KG + ++ IYN L
Sbjct: 568 -------------GFCKQGEVEKAFE--------------LHDEMCLKGIAPNIFIYNAL 600

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L + G++++A  LF  M    LE +S+++S  I  + +S ++ EA    +++     
Sbjct: 601 VDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGV 660

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P    YN L  G CK G+++ AM L R+ L       T   +   I   C+S + ++  
Sbjct: 661 QPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK--GFATTLSFNTLIDGYCKSCKIQEAS 718

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           ++  EM  +   P+ V  + +I   CK G +EEA  +F  ++ER L+ +  T+ Y  ++ 
Sbjct: 719 QLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVD--TVTYTSLMY 776

Query: 599 EHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
            + K   +  V      F L  K+ AKG K
Sbjct: 777 GYNKLGQSSEV------FALFEKMVAKGVK 800



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 120/490 (24%), Positives = 207/490 (42%), Gaps = 33/490 (6%)

Query: 155 YNALAYCLSRNNLFRAADQVPELMDSQGR---------------------IAEMLEILEK 193
           YNA+  CLS+      A     L++ QGR                     + E  +  ++
Sbjct: 422 YNAIISCLSKAGKMEEASTY--LLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDE 479

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M  +   P+   YT +I       NL   L ++  +    V  DV      I GL K GR
Sbjct: 480 MLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGR 539

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           V    ++F E+KE G++ D   Y  LI G   +G+V KA +L  ++   G   ++ IYN+
Sbjct: 540 VQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNA 599

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           ++ GLC+     +A KLF+   +  L PD  T + ++    +   +   F L  +M    
Sbjct: 600 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG 659

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALY 433
               + +         KE  +  A+++F E+  KG+++   +N L+    +  ++++A  
Sbjct: 660 VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQ 719

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           LF +M    +  + ++++  I  H ++G + EA     ++ E + +     Y  L  G  
Sbjct: 720 LFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYN 779

Query: 494 KIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
           K+G+      L       VA G  P E  Y L I   C+     +  ++ +E+  +G   
Sbjct: 780 KLGQSSEVFALFEKM---VAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLT 836

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIVYDEILIEHMKKKTADL 608
              I   +I+ +CK   L EA K+   + E  L   L   +T+V      E  K   A  
Sbjct: 837 KGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRS--FHEAGKMDEATR 894

Query: 609 VLSGLKFFGL 618
           V  G+K  GL
Sbjct: 895 VFEGVKSLGL 904



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 184/414 (44%), Gaps = 7/414 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E L I   +      PDV   +A I  L     +   L+V+ E+K+  +  DV  Y
Sbjct: 503 GNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTY 562

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI G CK G V +  EL  EM   GI  +  IY  L++GL   G + +A  L   + +
Sbjct: 563 SSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPE 622

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   Y+++I G C+ +   +A+ LF       + P     N L+  C + G M+ 
Sbjct: 623 KGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEK 682

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
              L  +M +  F+         +    K  +I  A  +F+E+  K      + Y  ++ 
Sbjct: 683 AMNLFREMLQKGFATTLSFNTLIDGYC-KSCKIQEASQLFQEMIAKQIMPDHVTYTTVID 741

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G++++A  LF +M+  NL V++++++  +  + + G   E      K++     P
Sbjct: 742 WHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKP 801

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN--VASGPTEFKYALTILHVCRSGEAEKII 538
               Y  +    CK   +  A  L  + +G   +  G     + L I  +C+  +  +  
Sbjct: 802 DEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTI---HDLLITALCKREDLTEAS 858

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           ++L+EM + G  P+   CS ++    + G ++EA +VF  ++   L+ +  T++
Sbjct: 859 KLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLI 912



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 154/347 (44%), Gaps = 37/347 (10%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG + +  E+ ++M      P++F Y A++  L    ++    ++++ M +  +E D + 
Sbjct: 572 QGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVT 631

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I G CK   V     LF EM   G+     +Y  L+ G   EG + KA +L ++++
Sbjct: 632 YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 691

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G+   L  +N++I G C+  +  +A +LF+  +   + PD  T   ++    + G+M+
Sbjct: 692 QKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKME 750

Query: 361 NFFKLLAQMEKL-----------------KFSVAADLEKFFEFLVGK------------- 390
               L  +M++                  K   ++++   FE +V K             
Sbjct: 751 EANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVI 810

Query: 391 -----EERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                E+ ++ A  + +E+ GKG  +   I+++L+ AL +  ++ +A  L  +M  L L+
Sbjct: 811 YAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLK 870

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
            +  + S  ++   E+G + EA      +  +  VP       L  G
Sbjct: 871 PSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNG 917



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 113/530 (21%), Positives = 202/530 (38%), Gaps = 112/530 (21%)

Query: 69  TQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKV 128
           T +P S+   F  Q         I+D  ++N   W   +V+      ++ PD++  VL  
Sbjct: 31  TSTPTSETLNFSQQ---------ISDFLKQNN--WKTIMVSSHIP-SKLNPDVIRAVLHQ 78

Query: 129 EN--NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAE 186
               +P     FF+W+  Q G      S++ LA  L  + LF  A+ V            
Sbjct: 79  NQVGDPKRLLDFFYWSQSQMGVPQFLDSFSILAVQLCNSELFGLANGV------------ 126

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
                               T MIR   +  ++   +  W    ++   +  + +  LI 
Sbjct: 127 -------------------LTQMIRTPYSSSSILDSVLFW---FRNYGGSSPVVFDILID 164

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
              + G +     +F   K + ILI       LI            C+ L+ + + G   
Sbjct: 165 SYKRMGMLDEAANVFFVAKNDSILIS------LIR-----------CNSLRSMGEKGLVP 207

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           +   Y  I  GLCR K+ ++A   FE   +  L PD++  + L+      G +D   ++ 
Sbjct: 208 NTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI- 266

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI----YNILMGAL 422
                                    + +M++              +PI    YN+L+  L
Sbjct: 267 -------------------------KDVMVS------------CGIPINLITYNVLIHGL 289

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            + G+++KA  +   M  L  + NS +F + I+ +    ++  A E  +++ + + VPS 
Sbjct: 290 CKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSA 349

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEV 540
            +Y  +  GLC   ++  A  L+        SG  P    Y+  I+     G  E+   +
Sbjct: 350 VSYGAMINGLCHCKDLSLANKLLEKM---TFSGLKPNVVVYSTLIMGYASEGRIEEARRL 406

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           L+ M+  G  P+    +AIIS + K G +EEA      ++ R L  +A T
Sbjct: 407 LDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVT 456


>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 913

 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 202/476 (42%), Gaps = 100/476 (21%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL-- 248
            E MR    +P+ F +T+++   A  R++   L   EEMK + +E  ++ Y  LI G   
Sbjct: 300 FENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCTEEMKAEGIELTIVTYSILISGFGK 359

Query: 249 ---------------------------------CKGGRVVRGHELFREMKENG------- 268
                                            C+ G + R  EL  EM+E+G       
Sbjct: 360 INDTQSADNLFKEAKTNLGDLNGIIYSNIIHAHCQSGNMDRAEELVHEMEEDGIDAPIDA 419

Query: 269 ------------------ILIDR----------AIYGVLIEGLVGEGKVGKACDLLKDLV 300
                             I+ +R            YG LI   V  GKV KA  + K++ 
Sbjct: 420 YHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYVKIGKVAKAIAISKEME 479

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            SG + +   Y+ +I G   +  F  A+++FE  ++  L PD +  N L+    +MG MD
Sbjct: 480 SSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMD 539

Query: 361 NFFKLLAQMEKLK--------------FSVAADLEKFFEFLVGKEERIMMALDVFEELKG 406
              ++L +M+K +              F+VA D+++              ALD+ + ++ 
Sbjct: 540 RAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKR--------------ALDILDLMRR 585

Query: 407 KGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G + +V  YN L+  L+   +V++A+ +  KM    +  N  +++I ++ +  +GDI +
Sbjct: 586 SGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAK 645

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A E   KI E      V  Y  L +  CK G + +A+ + R+      +  T F Y + I
Sbjct: 646 AFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNT-FVYNILI 704

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
               R G+  +  +++ +M ++G PPN    ++ I+  CK G ++ A+ V   + +
Sbjct: 705 DGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSD 760



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 131/306 (42%), Gaps = 1/306 (0%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
             I E+M ++  +PD   Y  +I       N+D  +R+ E+M+K+ ++    A+  +I G
Sbjct: 507 FRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEG 566

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
               G + R  ++   M+ +G       Y  LI GL+ + +V +A  +L  +  +G   +
Sbjct: 567 FAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPN 626

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
              Y  I+ G        KA++ F    +  L  D      LL  C + GRM +   +  
Sbjct: 627 EHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTR 686

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIG 426
           +M   K +    +         +   +  A D+ +++K  G   ++  Y   + A  + G
Sbjct: 687 EMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAG 746

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
           ++++A  +  +M  + L+ N  +++  I+    +     A +C  ++      P  AAY+
Sbjct: 747 DMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYH 806

Query: 487 CLTKGL 492
           CL   L
Sbjct: 807 CLVTSL 812



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 16/227 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G      +YNAL + L R N                ++   + +L KM      P+ 
Sbjct: 584 RRSGCAPTVMTYNALIHGLIRKN----------------QVERAVSVLNKMSIAGITPNE 627

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT ++R  AA  ++      + ++K+  ++ DV  Y TL+   CK GR+     + RE
Sbjct: 628 HTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTRE 687

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M    I  +  +Y +LI+G    G V +A DL+K + + G   ++  Y S I   C+   
Sbjct: 688 MSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGD 747

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
             +A  + +      L P+  T   L+   A     D   K   +M+
Sbjct: 748 MQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMK 794



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 113/263 (42%), Gaps = 5/263 (1%)

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
           RA   + E     G +   L+IL+ MRR+ C P V  Y A+I  L  +  ++  + V  +
Sbjct: 558 RAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNK 617

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           M    +  +   Y  ++ G    G + +  E F ++KE G+ +D  IY  L+      G+
Sbjct: 618 MSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGR 677

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           +  A  + +++       +  +YN +I G  R     +A  L +   +D + P+  T   
Sbjct: 678 MQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTS 737

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM--MALDVFEELKG 406
            +  C + G M     ++ +M  +   +  +L+ +   + G     +   AL  FEE+K 
Sbjct: 738 YINACCKAGDMQRAQTVIDEMSDV--GLKPNLKTYTTLIKGWARASLPDRALKCFEEMKL 795

Query: 407 KGYS-SVPIYNILMGALLEIGEV 428
            G       Y+ L+ +LL    V
Sbjct: 796 AGLKPDEAAYHCLVTSLLSRATV 818



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 24/222 (10%)

Query: 91  FITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVEN---NPTLASKFFHWAG-KQK 146
            I    RKNQ +    V+ ++S +  +TP+     + +        +A  F ++   K+ 
Sbjct: 598 LIHGLIRKNQVERAVSVLNKMS-IAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEG 656

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-------------------GRIAEM 187
           G K +   Y  L     ++   ++A  V   M SQ                   G + E 
Sbjct: 657 GLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEA 716

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            +++++M+ +   P++  YT+ I       ++     V +EM    ++ ++  Y TLI G
Sbjct: 717 ADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIKG 776

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
             +     R  + F EMK  G+  D A Y  L+  L+    V
Sbjct: 777 WARASLPDRALKCFEEMKLAGLKPDEAAYHCLVTSLLSRATV 818


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 133/529 (25%), Positives = 225/529 (42%), Gaps = 23/529 (4%)

Query: 72  PPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENN 131
           PP D  +      LS        +F+K      P   + +S L    PDL         N
Sbjct: 51  PPDDLSSHHFLSILSHPKWQRHPSFQKLIPNLSP---SHVSSLFNNHPDL---------N 98

Query: 132 PTLASKFFHWAGKQK-GYKHNFASYNALAYCLSRNNLFRAADQVPELMD----SQGRIAE 186
           P +A +FF+     K G+KH   S++ L   L  NNLF   +++   M     S   I  
Sbjct: 99  PNIALQFFNSLPLIKPGFKHTVKSHSFLLKILIPNNLFGVGEKIRISMIKACVSVDDIRF 158

Query: 187 MLEILEKMRRN----LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           +L+ L +M R+      K  V +Y  ++ +LA    +D   RV+ EM  D++  ++    
Sbjct: 159 LLDFLRQMNRDDNDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLN 218

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           T++    K G +V  +    ++ + G+  D   Y  LI G      V  A  +   + + 
Sbjct: 219 TMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNK 278

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G R +   Y +II GLC   + D+   LF+   +DD  P   T   ++       R    
Sbjct: 279 GCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEG 338

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGA 421
             L  +M +                + KE ++  +  +  E+  KG   SV  YN L+  
Sbjct: 339 MDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRG 398

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
             E G ++ AL + G M   N   N  +++  I    +   + +A    +K++E    PS
Sbjct: 399 YCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPS 458

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           +  YN L    CK G  D+A  L+ D L      P ++ Y++ I  +C+S   E+  ++ 
Sbjct: 459 LVTYNSLIHVQCKAGHFDSAYKLL-DLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLF 517

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           N + ++G   NEV+ +A+I G CK G ++EA  +   +     L  ++T
Sbjct: 518 NSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSST 566



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/466 (23%), Positives = 196/466 (42%), Gaps = 56/466 (12%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
           Q G   +  +Y +L     RNN   +A +V  +M ++G                   RI 
Sbjct: 242 QAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRID 301

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVL-AAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           E + + +KMR + C P V  YT +I  L   +RNL+  + ++ EM++   E +V  Y  +
Sbjct: 302 EGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEG-MDLFNEMRERSCEPNVHTYTVM 360

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           +  +CK  ++     +  EM E G++     Y  LI G   EG++  A ++L  +  +  
Sbjct: 361 VDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNC 420

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           R +   YN +I G  + K   KA  L    ++  L P   T N L+    + G  D+ +K
Sbjct: 421 RPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYK 480

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE 424
           LL  +++            F   + K +R+  A D+F  LK KG                
Sbjct: 481 LLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKG---------------- 524

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
                             ++ N + ++  I  H ++G I EA     ++     +P+ + 
Sbjct: 525 ------------------IKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSST 566

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN L  G+CK G++   + +V + +  +   PT   Y + I  + R G+ +    V N+M
Sbjct: 567 YNSLIYGVCKEGKVQEGLSMVEN-MSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQM 625

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
              G  P+    +A I   C  G ++EA  +   + E  ++ ++ T
Sbjct: 626 VSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLT 671



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 186/406 (45%), Gaps = 16/406 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I E    + K+ +    PD F YT++I       ++++  +V+  M       + ++Y
Sbjct: 228 GNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSY 287

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T+I GLC+ GR+  G  LF++M+E+        Y V+I  L G  +  +  DL  ++ +
Sbjct: 288 TTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRE 347

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                ++  Y  ++  +C+ ++ D++ ++    ++  L P   T N L+    E GR++ 
Sbjct: 348 RSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEA 407

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE-LKGKGYSSVPIYNIL 418
             ++L  ME    +   +   + E + G  K + +  A+ +  + L+ K   S+  YN L
Sbjct: 408 ALEILGLME--SNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSL 465

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G    A  L   ++   L  +  ++S+ I    +S  + EAC+  N + E   
Sbjct: 466 IHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGI 525

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLV-----RDCLGNVASGPTEFKYALTILHVCRSGE 533
             +   Y  L  G CK G+ID A+ L+      DCL N ++      Y   I  VC+ G+
Sbjct: 526 KANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSST------YNSLIYGVCKEGK 579

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            ++ + ++  M++ G  P     + +I  M + G  + A +VF  +
Sbjct: 580 VQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQM 625



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 167/382 (43%), Gaps = 8/382 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  E +++  +MR   C+P+V  YT M+  +  ER LD   R+  EM +  +   V+ Y 
Sbjct: 334 RNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYN 393

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI G C+ GR+    E+   M+ N    +   Y  LI G      V KA  LL  +++S
Sbjct: 394 ALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLES 453

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
                L  YNS+I   C+   FD AYKL ++  ++ L PD  T +  +    +  RM+  
Sbjct: 454 KLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEA 513

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILM 419
             L   +++    + A+   +   + G  K  +I  A+ + E +  +    +   YN L+
Sbjct: 514 CDLFNSLKEK--GIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLI 571

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             + + G+V++ L +   M  + ++    +++I I+  +  GD   A    N+++     
Sbjct: 572 YGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHK 631

Query: 480 PSVAAYNCLTKGLCKIGEI-DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           P V  Y       C  G + +A  M+ R     V   P    Y L I    R G A    
Sbjct: 632 PDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVM--PDSLTYTLLISAYERLGLAYDAF 689

Query: 539 EVLNEMTQEGCPPNEVICSAII 560
            VL  M   GC P+  I + +I
Sbjct: 690 NVLKRMLDAGCDPSHPIWNNLI 711



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 150/355 (42%), Gaps = 56/355 (15%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           +KG   +  +YNAL   YC                   +GRI   LEIL  M  N C+P+
Sbjct: 382 EKGLVPSVVTYNALIRGYC------------------EEGRIEAALEILGLMESNNCRPN 423

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
              Y  +I   +  +++   + +  +M +  +   ++ Y +LI   CK G     ++L  
Sbjct: 424 ERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLD 483

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            +KENG++ D+  Y V I+ L    ++ +ACDL   L + G +A+  +Y ++I G C+  
Sbjct: 484 LLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAG 543

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           + D+A  L E    +D  P+ ST N L+                                
Sbjct: 544 KIDEAISLLERMHSEDCLPNSSTYNSLI-------------------------------- 571

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
              + V KE ++   L + E +   G   +V  Y IL+  +L  G+   A  +F +M   
Sbjct: 572 ---YGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSF 628

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
             + +  +++  I  +  SG++ EA     ++IE   +P    Y  L     ++G
Sbjct: 629 GHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLG 683



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 16/165 (9%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           N ++YN+L Y + +                +G++ E L ++E M +   KP V  YT +I
Sbjct: 563 NSSTYNSLIYGVCK----------------EGKVQEGLSMVENMSKMGVKPTVATYTILI 606

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
             +  E + D   RV+ +M     + DV  Y   I   C  G V     +   M E G++
Sbjct: 607 EEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVM 666

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
            D   Y +LI      G    A ++LK ++D+G      I+N++I
Sbjct: 667 PDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNLI 711



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 80/209 (38%), Gaps = 20/209 (9%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           K+KG K N   Y AL   +C                    G+I E + +LE+M    C P
Sbjct: 521 KEKGIKANEVMYTALIDGHC------------------KAGKIDEAISLLERMHSEDCLP 562

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +   Y ++I  +  E  +   L + E M K  V+  V  Y  LI  + + G     + +F
Sbjct: 563 NSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVF 622

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            +M   G   D   Y   I      G V +A  ++  ++++G   D   Y  +I    R+
Sbjct: 623 NQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERL 682

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
                A+ + +  +     P     N L+
Sbjct: 683 GLAYDAFNVLKRMLDAGCDPSHPIWNNLI 711


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 203/427 (47%), Gaps = 8/427 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E     E+M++   KPD  A +A+I     E ++D  LR+ + M    +  +++ Y 
Sbjct: 313 RMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYN 372

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI GLCK G++ +  E+ + M   G   +   + +LIEG   E  +G+A +LL ++   
Sbjct: 373 VLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKR 432

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
                   Y ++I GLC  K    A KL E      L P+    + L++  A  GR++  
Sbjct: 433 NLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEA 492

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYSSVPI-YNILM 419
            +LL  M      VA D+  +   +  + K  ++  A     E++G+G     + +   +
Sbjct: 493 RRLLDGMS--CSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFI 550

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               + G++ +A   F +M    L  N+  +++ I  H ++G+++EA     ++  +  +
Sbjct: 551 LGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVL 610

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P V   +    GL K G +  A+ +  + L      P  F Y+  I   C+ GE EK  E
Sbjct: 611 PDVQTCSAFIHGLLKNGRVQEALKVFSE-LKEKGLVPDVFTYSSLISGFCKQGEVEKAFE 669

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           + +EM  +G  PN  I +A++ G+CK G ++ ARK+F  + E+ L  E +++ Y  ++  
Sbjct: 670 LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGL--EPDSVTYSTMIDG 727

Query: 600 HMKKKTA 606
           + K +  
Sbjct: 728 YCKSENV 734



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 205/450 (45%), Gaps = 46/450 (10%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+GRI E   +L+ M  +   PD+F Y A+I  L+    ++       E++   ++ D +
Sbjct: 485 SEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAV 544

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            +   I+G  K G++    + F EM ++G++ +  +Y VLI G    G + +A  + + L
Sbjct: 545 TFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRL 604

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   D+   ++ I GL +  +  +A K+F    +  L PD  T + L+         
Sbjct: 605 HALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLIS-------- 656

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
                         F    ++EK FE              + +E+  KG + ++ IYN L
Sbjct: 657 -------------GFCKQGEVEKAFE--------------LHDEMCLKGIAPNIFIYNAL 689

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L + G++++A  LF  M    LE +S+++S  I  + +S ++ EA    +++     
Sbjct: 690 VDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGV 749

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P    YN L  G CK G+++ AM L R+ L       T   +   I   C+S + ++  
Sbjct: 750 QPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK--GFATTLSFNTLIDGYCKSCKIQEAS 807

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           ++  EM  +   P+ V  + +I   CK G +EEA  +F  ++ER L+ +  T+ Y  ++ 
Sbjct: 808 QLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVD--TVTYTSLMY 865

Query: 599 EHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
            + K   +  V      F L  K+ AKG K
Sbjct: 866 GYNKLGQSSEV------FALFEKMVAKGVK 889



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 121/490 (24%), Positives = 207/490 (42%), Gaps = 33/490 (6%)

Query: 155 YNALAYCLSRNNLFRAADQVPELMDSQGR---------------------IAEMLEILEK 193
           YNA+  CLS+      A     L++ QGR                     + E  +  ++
Sbjct: 511 YNAIISCLSKAGKMEEASTY--LLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDE 568

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M  +   P+   YT +I       NL   L ++  +    V  DV      I GL K GR
Sbjct: 569 MLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGR 628

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           V    ++F E+KE G++ D   Y  LI G   +G+V KA +L  ++   G   ++ IYN+
Sbjct: 629 VQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNA 688

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           ++ GLC+     +A KLF+   +  L PD  T + ++    +   +   F L  +M    
Sbjct: 689 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG 748

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALY 433
               + +         KE  +  A+++F E+  KG+++   +N L+    +  ++++A  
Sbjct: 749 VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQ 808

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           LF +M    +  + ++++  I  H ++G + EA     ++ E + +     Y  L  G  
Sbjct: 809 LFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYN 868

Query: 494 KIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
           K+G+      L       VA G  P E  Y L I   C+     +  ++ +E+  +G   
Sbjct: 869 KLGQSSEVFALFEKM---VAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLT 925

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIVYDEILIEHMKKKTADL 608
              I   +I+ +CK   L EA K+   + E  L   L   NT+V      E  K   A  
Sbjct: 926 KGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRS--FHEAGKMDEATR 983

Query: 609 VLSGLKFFGL 618
           V  G+K  GL
Sbjct: 984 VFEGVKSLGL 993



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 124/543 (22%), Positives = 223/543 (41%), Gaps = 88/543 (16%)

Query: 92  ITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVEN--NPTLASKFFHWAGKQKGYK 149
           I+D  ++N   W   +V+      ++ PD++  VL      +P     FF+W+  Q G  
Sbjct: 47  ISDFLKQNN--WKTIMVSSHIP-SKLNPDVIRAVLHQNQVGDPKRLLDFFYWSQSQMGVP 103

Query: 150 HNFASYNALAYCLSRNNLFRAADQV-----------PELMDS--------QGRIAEMLEI 190
               S++ LA  L  + LF  A+ V             ++DS         G    + +I
Sbjct: 104 QFLDSFSILAVQLCNSELFGLANGVLTQMIRTPYSSSSILDSVLFWFRNYGGSSPVVFDI 163

Query: 191 LEKMRRNLCKPDVFA-----------YTAMIRVLAAERNLDAC------LRVWEEMKKDL 233
           L    + +   D  A             ++IR  +  ++L  C       +V+  M    
Sbjct: 164 LIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNGMLDAK 223

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  DV  Y  L+  LCK G +     +  EM E G+  +  IY ++IEG+   G + +A 
Sbjct: 224 MGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAV 283

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           +L + + + G   +   Y  I  GLCR K+ ++A   FE   +  L PD++  + L+   
Sbjct: 284 ELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGF 343

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
              G +D   ++                          + +M++              +P
Sbjct: 344 MREGDIDEVLRI--------------------------KDVMVS------------CGIP 365

Query: 414 I----YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
           I    YN+L+  L + G+++KA  +   M  L  + NS +F + I+ +    ++  A E 
Sbjct: 366 INLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALEL 425

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILH 527
            +++ + + VPS  +Y  +  GLC   ++  A  L+        SG  P    Y++ I+ 
Sbjct: 426 LDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKM---TFSGLKPNVVVYSILIMA 482

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
               G  E+   +L+ M+  G  P+    +AIIS + K G +EEA      ++ R L  +
Sbjct: 483 YASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPD 542

Query: 588 ANT 590
           A T
Sbjct: 543 AVT 545



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 185/421 (43%), Gaps = 7/421 (1%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           DV+ YT ++  L    +L    RV  EM +  +  +   Y  +I G+C+ G +    EL 
Sbjct: 227 DVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELK 286

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           R M E G++ +   Y ++  GL    ++ +A    +++  +G + D    +++I G  R 
Sbjct: 287 RSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMRE 346

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
              D+  ++ +V V   +  +  T N L+    + G+M+   ++L  M  L      +  
Sbjct: 347 GDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTL--GCKPNSR 404

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKM 438
            F   + G  +E  +  AL++ +E++ +    S   Y  ++  L    ++  A  L  KM
Sbjct: 405 TFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKM 464

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
               L+ N + +SI I  +   G I EA    + +      P +  YN +   L K G++
Sbjct: 465 TFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKM 524

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           + A   + +  G     P    +   IL   ++G+  +  +  +EM   G  PN  + + 
Sbjct: 525 EEASTYLLEIQGR-GLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTV 583

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTI-VYDEILIEHMKKKTADLVLSGLKFFG 617
           +I+G  K G L EA  +F  L    +L +  T   +   L+++ + + A  V S LK  G
Sbjct: 584 LINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKG 643

Query: 618 L 618
           L
Sbjct: 644 L 644



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 154/347 (44%), Gaps = 37/347 (10%)

Query: 181  QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            QG + +  E+ ++M      P++F Y A++  L    ++    ++++ M +  +E D + 
Sbjct: 661  QGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVT 720

Query: 241  YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
            Y T+I G CK   V     LF EM   G+     +Y  L+ G   EG + KA +L ++++
Sbjct: 721  YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 780

Query: 301  DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
              G+   L  +N++I G C+  +  +A +LF+  +   + PD  T   ++    + G+M+
Sbjct: 781  QKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKME 839

Query: 361  NFFKLLAQMEKL-----------------KFSVAADLEKFFEFLVGK------------- 390
                L  +M++                  K   ++++   FE +V K             
Sbjct: 840  EANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVI 899

Query: 391  -----EERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                 E+ ++ A  + +E+ GKG  +   I+++L+ AL +  ++ +A  L  +M  L L+
Sbjct: 900  YAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLK 959

Query: 445  VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
             +  + +  ++   E+G + EA      +  +  VP       L  G
Sbjct: 960  PSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNG 1006


>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
          Length = 847

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 116/509 (22%), Positives = 209/509 (41%), Gaps = 78/509 (15%)

Query: 102 QWGPQVVTELSKLRRVTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAY 160
           Q+GP +V          PDL   VL     +P +A + F WA  Q G++ +   + A+  
Sbjct: 379 QFGPVIVD---------PDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILE 429

Query: 161 CLSRNNLFRAADQVPE---------------------------------LMDSQGRIAEM 187
            L++NNL R+A  V E                                 +   +  + + 
Sbjct: 430 ILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQC 489

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L + +KM ++   PDV     ++R+L  +  +   + V+  M +  ++  ++ Y TL+  
Sbjct: 490 LSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDS 549

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            CKGG+V +G +L  EM+  G   +   Y VLI GL  +G+  +A  L+ +++ +G +  
Sbjct: 550 YCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVS 609

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
              YN +I G        +A  L E  V    +P  +T N  +    ++GRM +  + L+
Sbjct: 610 AYTYNPLIYGYFNKGLLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLS 669

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE 427
            M                                  L       V  YN L+     +G 
Sbjct: 670 DM----------------------------------LANNLLPDVVSYNTLIYGYCRLGN 695

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           + KA  LF ++R + L    ++++  +      G++  A +   ++I     P +  Y  
Sbjct: 696 LMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTI 755

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L  G CK+G +  A     + L         + YA  I+   + G+  +   +  EM  +
Sbjct: 756 LVNGSCKMGSLSMAQEFFDEMLHE-GLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAK 814

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVF 576
           G PP+ +I + ++ G+CK G LEEA ++ 
Sbjct: 815 GFPPDLIIYNVVVDGLCKLGNLEEASELL 843



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 143/339 (42%), Gaps = 47/339 (13%)

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           ++   +F+  ++  L+PD    N +L    +   M    ++   M +  F +   +  + 
Sbjct: 487 EQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGE--FGIKPTIVTYN 544

Query: 385 EFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGL 441
             L    K  ++   LD+  E++ +G +   + YN+L+  L + GE ++A  L G+M   
Sbjct: 545 TLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKT 604

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            L+V++ +++  I  +   G + EA     +++     P+VA YN    GLCK+G +  A
Sbjct: 605 GLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDA 664

Query: 502 MMLVRDCLGN----------------------------------VASGPTEFKYALTILH 527
           M  + D L N                                  +   PT   Y   +  
Sbjct: 665 MQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDG 724

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           +CR GE E   ++  EM  EG  P+ V  + +++G CK G+L  A++ F  +    L  E
Sbjct: 725 LCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGL--E 782

Query: 588 ANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKG 626
            ++  Y   ++  +K           + F L+ ++ AKG
Sbjct: 783 LDSYAYATRIVGELKLGDTS------RAFSLQEEMLAKG 815



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 4/142 (2%)

Query: 463 ILEAC-ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
           ++E C    +K+I+    P V   N + + L     +  A+ + R  +G     PT   Y
Sbjct: 485 MVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYR-TMGEFGIKPTIVTY 543

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              +   C+ G+ ++ +++L+EM + GC PN+V  + +I+G+ K G  E+A+ +   + +
Sbjct: 544 NTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLK 603

Query: 582 RKLLTEANTIVYDEILIEHMKK 603
             L   A T  Y+ ++  +  K
Sbjct: 604 TGLKVSAYT--YNPLIYGYFNK 623


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 183/410 (44%), Gaps = 39/410 (9%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA- 236
           +   GR+ E   I   M  N C+PD F YTA+I+ L      +    +++E       A 
Sbjct: 122 LSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHAT 181

Query: 237 ---DVMAYVTLIMGLCKGGRVVRGHELF-REMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
              DV+ Y +LI GLCK GR++   ++F  E  E G + D   Y  +I+GL   G+V + 
Sbjct: 182 AVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEG 241

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
           C+   ++ + GY  D   Y ++I G  + K   KA++++   +Q        T N +L  
Sbjct: 242 CERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDG 301

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSV 412
             + GR+                     E +  FL   EER  +A             +V
Sbjct: 302 LCKAGRV--------------------AEAYATFL-AMEERGCVA-------------TV 327

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             Y+ LM      G V  A+ LF +M     E N +S++I I+    +G + +A     K
Sbjct: 328 VTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEK 387

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           +++    P V  +N    GLC+  +  +  + + + + +  + P    Y++ +  +CR+G
Sbjct: 388 LLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAG 447

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             E  +E+  EM   G  P+ V+ + +I  +C  G ++EA +VF  L  R
Sbjct: 448 GLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERR 497



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 195/429 (45%), Gaps = 21/429 (4%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C PD+ A+T +I  L  E+ LD    V E   +   E D + Y   I GLCK  RV    
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 62

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           +L ++M E   L     Y  L++GL+  G++ +A  +L+ +V+ G    L  Y  +I GL
Sbjct: 63  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGL 122

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
            +  + ++A ++F   + +   PD      L+    + G+ +  + L  +    K    A
Sbjct: 123 SKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATA 182

Query: 379 --DLEKFFEFLVG--KEERIMMALDVF-EELKGKGY-SSVPIYNILMGALLEIGEVKKAL 432
             D+  +   + G  K  RI+ A  VF +E   +G+      Y  ++  L ++G V++  
Sbjct: 183 VPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGC 242

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
             F +MR    E ++++++  I   +++  I +A   + ++++   V S   YN +  GL
Sbjct: 243 ERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGL 302

Query: 493 CKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           CK G +  A      M  R C+  V +      Y+  +   C  G     +E+   M   
Sbjct: 303 CKAGRVAEAYATFLAMEERGCVATVVT------YSALMDGFCSEGNVSAAVELFRRMLDR 356

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           GC PN V  + II G+C+ G L +A   F  L +R+L  +  T  ++  L  H   +  D
Sbjct: 357 GCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYT--FNAFL--HGLCQRLD 412

Query: 608 LVLSGLKFF 616
            V  G++ F
Sbjct: 413 TVSDGVELF 421



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 100/201 (49%), Gaps = 6/201 (2%)

Query: 177 LMD---SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD   S+G ++  +E+  +M    C+P++ +Y  +IR L     L      +E++ +  
Sbjct: 333 LMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRR 392

Query: 234 VEADVMAYVTLIMGLCKG-GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
           +  DV  +   + GLC+    V  G ELF  M   G   +   Y +L++G+   G +  A
Sbjct: 393 LCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVA 452

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
            ++ +++V  G   D+ ++N++I  LC   + D+A ++F   ++   APD  +   LL  
Sbjct: 453 LEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFR-ELERRSAPDAWSYWSLLDG 511

Query: 353 CAEMGRMDNFFKLLAQMEKLK 373
            +   RM+   +LL+   KL+
Sbjct: 512 LSRCERMEE-ARLLSFHMKLQ 531


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 204/434 (47%), Gaps = 16/434 (3%)

Query: 181 QGRIAEMLEILEKMR-RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
            GR+ E  +I E M   + C P+V  YT +I  L  +  LD  + + + M +     +V+
Sbjct: 113 SGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVI 172

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  L+ GLCK GR  +G  L +EM   G   D  +Y  L+ GL    ++ +A +L++ +
Sbjct: 173 TYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLM 232

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           + SG    +  YNS++   CR KQ D+A++L +V  +    PD    N ++       R+
Sbjct: 233 IRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARL 292

Query: 360 DNFFKLLAQM-------EKLKFSVAAD-LEKFFEFLVGKEERIMMALDVFEELKGKGY-S 410
           D+   LL QM       + + +S   D L K  ++ V  + ++  A ++ E +K  G   
Sbjct: 293 DDAQALLKQMVAARCVPDVITYSTIIDGLCK--DWRVDADWKLEAACEILEMMKQTGCPP 350

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           +   Y +++  L    + ++AL L  +M    +  +  SFS+ I    +S D+  A +  
Sbjct: 351 NAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIF 410

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
             + E    P+  AY  L  GL K GE+D A+ +    + +   G   +   L  L  C 
Sbjct: 411 GMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGL--CG 468

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            G  E+ + ++  M  + C P+     A+I G+C+   +EEA ++F  +  +    E   
Sbjct: 469 VGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVG- 527

Query: 591 IVYDEILIEHMKKK 604
            VY+ ++ E  KKK
Sbjct: 528 -VYNVLVNELCKKK 540



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 192/432 (44%), Gaps = 18/432 (4%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  +  + ++  R   C P+ F Y ++I  L     LD    + +EM+   +   V  + 
Sbjct: 10  RAGQHGQAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHN 69

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL-VD 301
            +I GLCK GR       F+ +       D   + +L++ LV  G+V +A  + + +   
Sbjct: 70  GVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTS 129

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           S    ++  Y ++I GLC+  + D+A +L ++  +    P+  T + L+    + GR D 
Sbjct: 130 SQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDK 189

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
            F LL +M +  F    D+  +   L G  K  R+  AL++ + +   G Y +V  YN L
Sbjct: 190 GFTLLQEMTRRGFQ--PDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSL 247

Query: 419 MGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           M       +V +A  L   M  RG   +V + +  IA  C     D  +A     +++  
Sbjct: 248 MELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQA--LLKQMVAA 305

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-----LGNVASGPTEFKYALTILHVCRS 531
             VP V  Y+ +  GLCK   +DA   L   C     +      P    YA+ I  +CR+
Sbjct: 306 RCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRA 365

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
            ++++ + +L  M      P+    S +I  +CK   L+ A K+F  + ER+   + N +
Sbjct: 366 RKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERE--CKPNPV 423

Query: 592 VYDEILIEHMKK 603
            Y   LI+ + K
Sbjct: 424 AY-AALIDGLSK 434



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 153/352 (43%), Gaps = 43/352 (12%)

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           L + G+  +  +LFRE +    + +   YG LI GL   GK+ +A +LL ++ D G    
Sbjct: 8   LVRAGQHGQAVQLFREER---CVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPG 64

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           + ++N +I GLC+  +F  A   F+        PD  T N L+    + GR++  F++  
Sbjct: 65  VAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFE 124

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE 427
            M                                     +   +V  Y  ++  L + G+
Sbjct: 125 SMHT---------------------------------SSQCLPNVVTYTTVINGLCKDGK 151

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           + +A+ L   M       N +++S+ ++   ++G   +      ++      P V  YN 
Sbjct: 152 LDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNT 211

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           L  GLCK   +D A+ LV+     + SG  PT   Y   +   CRS + ++   ++  M+
Sbjct: 212 LLNGLCKSRRLDEALELVQL---MIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMS 268

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           + GCPP+ +  + +I+G+C+   L++A+ +   +   + +   + I Y  I+
Sbjct: 269 ERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCV--PDVITYSTII 318



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 146/375 (38%), Gaps = 60/375 (16%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
           ++G++ +   YN L   L ++     A ++ +LM   G                   ++ 
Sbjct: 199 RRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVD 258

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
               +++ M    C PDV  Y  +I  L  +  LD    + ++M       DV+ Y T+I
Sbjct: 259 RAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTII 318

Query: 246 MGLCKGGRV------VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            GLCK  RV          E+   MK+ G   +   Y V+IEGL    K  +A  LL+ +
Sbjct: 319 DGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRM 378

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +DS    DL  ++ +IG LC+    D AYK+F +  + +  P     NP+    A    +
Sbjct: 379 IDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKP-----NPV----AYAALI 429

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
           D   K              +++K              A+ VFE +       V  YN ++
Sbjct: 430 DGLSK------------GGEVDK--------------AVRVFELMVESFRPGVATYNSVL 463

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L  +G +++A+ +   M       +  S+   I+       + EA E    +      
Sbjct: 464 DGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFA 523

Query: 480 PSVAAYNCLTKGLCK 494
             V  YN L   LCK
Sbjct: 524 MEVGVYNVLVNELCK 538



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 109/232 (46%), Gaps = 1/232 (0%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +D+  ++    EILE M++  C P+   Y  +I  L   R     L +   M    V  D
Sbjct: 327 VDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPD 386

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           + ++  +I  LCK   +   +++F  M E     +   Y  LI+GL   G+V KA  + +
Sbjct: 387 LSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE 446

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            +V+S +R  +  YNS++ GLC V + ++A ++ E  +  +  PD ++   L+     + 
Sbjct: 447 LMVES-FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVS 505

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY 409
            ++  ++L   +E   F++   +       + K++R+  A  V  +L   GY
Sbjct: 506 CVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGY 557



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 2/196 (1%)

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y  L+  L + G++ +A  L  +MR   +       +  I+   ++G   +A      + 
Sbjct: 33  YGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVA 92

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                P +  +N L   L K G ++ A  +      +    P    Y   I  +C+ G+ 
Sbjct: 93  GTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKL 152

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           ++ IE+L+ M + GC PN +  S ++ G+CK G  ++   +   +  R    + + I+Y+
Sbjct: 153 DRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGF--QPDVIMYN 210

Query: 595 EILIEHMKKKTADLVL 610
            +L    K +  D  L
Sbjct: 211 TLLNGLCKSRRLDEAL 226



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 11/120 (9%)

Query: 486 NCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           NC    L + G+   A+ L R+  C+      P EF Y   I  +C++G+ ++  E+L+E
Sbjct: 2   NCALNLLVRAGQHGQAVQLFREERCV------PNEFTYGSLIHGLCKAGKLDQAYELLDE 55

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           M   G PP   + + +I G+CK G   +A   F  +   K   +   I+   IL++ + K
Sbjct: 56  MRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPD---IITFNILVDALVK 112



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 28/205 (13%)

Query: 111 LSKLRR-----VTPDL-----VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAY 160
           L+ LRR     V PDL     V   L   ++   A K F    +++  K N  +Y AL  
Sbjct: 372 LALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERE-CKPNPVAYAALID 430

Query: 161 CLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLD 220
            LS+      A +V ELM            +E  R     P V  Y +++  L     ++
Sbjct: 431 GLSKGGEVDKAVRVFELM------------VESFR-----PGVATYNSVLDGLCGVGRIE 473

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280
             +R+ E M       D  +Y  LI GLC+   V   +ELF+ ++  G  ++  +Y VL+
Sbjct: 474 EAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLV 533

Query: 281 EGLVGEGKVGKACDLLKDLVDSGYR 305
             L  + ++  A  +   L+++GY+
Sbjct: 534 NELCKKKRLSDAHGVANKLIEAGYK 558


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 143/638 (22%), Positives = 243/638 (38%), Gaps = 119/638 (18%)

Query: 89  ARFITDAFRKNQFQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKG 147
           A  I+D  R     +G +    L + R ++   LV +VL +  NP L  KFF WAG+Q G
Sbjct: 98  AVLISDVIRNTGDGFGHKTQKFLRQFREKLNETLVVDVLSLVKNPELGVKFFIWAGRQIG 157

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPE--LMDSQGRIAEML-EILEKMRRNLC----- 199
           Y H    Y+AL   L         D+VPE  L + +    E+L ++L  + R  C     
Sbjct: 158 YGHTGPVYHALLEVLGCG----GNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLW 213

Query: 200 ---------------KPDVFAYTAMIRVLAAERNLDACLRVWEEM--------------- 229
                          KP    Y A++RV      LD    V  EM               
Sbjct: 214 NVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCF 273

Query: 230 -----------------KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
                            +K+  + D + Y  +I GLC+        +    M+ +  + +
Sbjct: 274 VHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPN 333

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              Y +L+ G + + ++G+   +L  ++  G      I+NS+I   CR   +  AYKL +
Sbjct: 334 VVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLK 393

Query: 333 VTVQDDLAPDFSTVNPLL-----------------------------------------V 351
                   P +   N L+                                          
Sbjct: 394 KMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLAR 453

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YS 410
           C    G+ +  + ++ +M    F            L+    ++  A  +FEE+K      
Sbjct: 454 CLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVP 513

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            V  Y IL+ +  ++G +++A   F +M       N ++++  I  ++++  +  A E  
Sbjct: 514 DVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELF 573

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV---------------ASG 515
             ++    +P+V  Y  L  G CK G+I+ A  +     GN                   
Sbjct: 574 EMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRD 633

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P  F Y   +  +C++ + ++  ++L+ M+ EGC PN ++  A+I G CK G L+EA+ V
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 576 FTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
           FT + ER      N   Y  ++    K K  DL L  L
Sbjct: 694 FTKMSERGY--GPNVYTYSSLIDRLFKDKRLDLALKVL 729



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 174/397 (43%), Gaps = 32/397 (8%)

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           + R L      +    +  EM       D   Y  +I  LC   +V     LF EMK N 
Sbjct: 451 LARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNH 510

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
           ++ D   Y +LI+     G + +A     ++V  G   ++  Y ++I    + ++   A 
Sbjct: 511 VVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSAN 570

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE--- 385
           +LFE+ + +   P+  T   L+    + G+++   ++ A+M     +   D++ +F+   
Sbjct: 571 ELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMR--GNADIPDVDMYFKIDD 628

Query: 386 --------FLVG-------KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVK 429
                   F  G       K  ++  A D+ + +  +G     I Y+ L+    ++G++ 
Sbjct: 629 GNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLD 688

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
           +A  +F KM       N  ++S  I    +   +  A +  ++++E S  P+V  Y  + 
Sbjct: 689 EAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMI 748

Query: 490 KGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
            GLCK+G+ D A     MM  + C  NV +      Y   I    ++G+ +K +E++ +M
Sbjct: 749 DGLCKVGKTDEAYRLMSMMEEKGCHPNVVT------YTAMIDGFGKAGKVDKCLELMRQM 802

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
             +GC PN V    +I+  C  G L++A ++   +++
Sbjct: 803 GAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQ 839



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 171/412 (41%), Gaps = 63/412 (15%)

Query: 173 QVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
           +V  L+ +  ++     + E+M+ N   PDVF YT +I        L    + ++EM +D
Sbjct: 485 KVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRD 544

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
               +V+ Y  LI    K  ++   +ELF  M   G + +   Y  LI+G    G++ KA
Sbjct: 545 GCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKA 604

Query: 293 CDLLKDL--------VDSGYRADLG--------IYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
           C +   +        VD  ++ D G         Y +++ GLC+  +  +A  L +V   
Sbjct: 605 CQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSV 664

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK-----FSVAADLEKFFEFLVGKE 391
           +   P+    + L+    ++G++D    +  +M +       ++ ++ +++ F     K+
Sbjct: 665 EGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLF-----KD 719

Query: 392 ERIMMALDVFEE-LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
           +R+ +AL V    L+     +V IY  ++  L ++G+  +A  L   M            
Sbjct: 720 KRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMME----------- 768

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
                   E G       CH         P+V  Y  +  G  K G++D  + L+R  +G
Sbjct: 769 --------EKG-------CH---------PNVVTYTAMIDGFGKAGKVDKCLELMRQ-MG 803

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
                P    Y + I H C +G  +   ++L+EM Q   P +      +I G
Sbjct: 804 AKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEG 855



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 99/487 (20%), Positives = 204/487 (41%), Gaps = 50/487 (10%)

Query: 113 KLRRVTPDLVAEVLKVEN--NPTLASKFFHWAGK--QKGYKHNFASYNALAYCLSRNNLF 168
           K   V PD+    + +++     L  +   W  +  + G   N  +Y AL +   +    
Sbjct: 507 KSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKM 566

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
            +A+++ E+M S+G                C P+V  YTA+I        ++   +++  
Sbjct: 567 SSANELFEMMLSEG----------------CIPNVVTYTALIDGHCKSGQIEKACQIYAR 610

Query: 229 MK--KDLVEAD--------------VMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           M+   D+ + D              +  Y  L+ GLCK  +V    +L   M   G   +
Sbjct: 611 MRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPN 670

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
             +Y  LI+G    GK+ +A  +   + + GY  ++  Y+S+I  L + K+ D A K+  
Sbjct: 671 HIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLS 730

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK-----FSVAADLEKFFEFL 387
             +++  AP+      ++    ++G+ D  ++L++ ME+        +  A ++ F    
Sbjct: 731 RMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGF---- 786

Query: 388 VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
            GK  ++   L++  ++  KG + +   Y +L+      G +  A  L  +M+      +
Sbjct: 787 -GKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKH 845

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
              +   I+    + + + +    ++I E   VP + AY  L    CK G ++ A+ L +
Sbjct: 846 MAGYRKVIEGF--NREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHK 903

Query: 507 DCLGNVA-SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
           +     + S   +  Y+  I  +  + + +K  E+  +M + G  P   I   ++ G+ +
Sbjct: 904 EMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIR 963

Query: 566 HGTLEEA 572
               EEA
Sbjct: 964 INRWEEA 970



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 156/347 (44%), Gaps = 7/347 (2%)

Query: 166 NLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV 225
           N+F     V  L  +  ++ E  ++L+ M    C+P+   Y A+I        LD    V
Sbjct: 635 NIFTYGALVDGLCKAH-KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285
           + +M +     +V  Y +LI  L K  R+    ++   M EN    +  IY  +I+GL  
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
            GK  +A  L+  + + G   ++  Y ++I G  +  + DK  +L         AP+F T
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL- 404
              L+  C   G +D+  +LL +M++  +     +  + + + G     +++L + +E+ 
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYW--PKHMAGYRKVIEGFNREFIISLGLLDEIA 871

Query: 405 KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN--LEVNSLSFSIAIQCHVESGD 462
           +      +P Y IL+ +  + G ++ AL L  +M         +   +S  I+    +  
Sbjct: 872 ENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASK 931

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           + +A E +  +I+   +P ++ +  L KGL +I   + A+ L  DC+
Sbjct: 932 VDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQL-SDCI 977



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 35/190 (18%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK---------- 231
           G++ + LE++ +M    C P+   Y  +I    A   LD   ++ +EMK+          
Sbjct: 790 GKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGY 849

Query: 232 ------------------DLVEADVM-----AYVTLIMGLCKGGRVVRGHELFREMKE-- 266
                             D +  +V      AY  LI   CK GR+    EL +EM    
Sbjct: 850 RKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCT 909

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           +    D+ +Y  LIE L    KV KA +L  D++  G   +L I+  ++ GL R+ ++++
Sbjct: 910 SYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEE 969

Query: 327 AYKLFEVTVQ 336
           A +L +   Q
Sbjct: 970 ALQLSDCICQ 979


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 205/443 (46%), Gaps = 51/443 (11%)

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYT 207
           Y+ N  ++N L + L  +N                + +E + ++++M    C+PD+F Y 
Sbjct: 181 YQPNTVTFNTLIHGLFLHN----------------KASEAVALIDRMVARGCQPDLFTYG 224

Query: 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
            ++  L    ++D  L + ++M+K  +EADV+ Y T+I  LC    V     LF EM   
Sbjct: 225 TVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNK 284

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           GI  +   Y  LI  L   G+   A  LL D+++     ++  ++++I    +  +  +A
Sbjct: 285 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 344

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
            KL++  ++  + PD  T + L+          N F +  ++++ K          FE +
Sbjct: 345 EKLYDEMIKRSIDPDIFTYSSLI----------NGFCMHDRLDEAK--------HMFELM 386

Query: 388 VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS 447
           + K+                 + +V  YN L+    +   V++ + LF +M    L  N+
Sbjct: 387 ISKD----------------CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 430

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
           ++++  IQ   ++GD   A +   K++     P +  Y+ L  GLCK G+++ A ++V +
Sbjct: 431 VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA-LVVFE 489

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            L      P  + Y + I  +C++G+ E   ++   ++ +G  PN +I + +ISG C+ G
Sbjct: 490 YLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKG 549

Query: 568 TLEEARKVFTNLRERKLLTEANT 590
             EEA  +F  ++E   L  + T
Sbjct: 550 LKEEADALFREMKEDGTLPNSGT 572



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 177/413 (42%), Gaps = 39/413 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I   L +L+KM +   + DV  YT +I  L   +N++  L ++ EM    +  +V+ 
Sbjct: 233 RGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 292

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI  LC  GR      L  +M E  I  +   +  LI+  V EGK+ +A  L  +++
Sbjct: 293 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 D+  Y+S+I G C   + D+A  +FE+ +  D  P+  T N L+          
Sbjct: 353 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI---------- 402

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILM 419
                                K F     K +R+   +++F E+  +G   +   YN L+
Sbjct: 403 ---------------------KGF----CKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 437

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L + G+   A  +F KM    +  + +++SI +    + G + +A      + +    
Sbjct: 438 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 497

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKII 538
           P +  YN + +G+CK G+++    L   C L      P    Y   I   CR G  E+  
Sbjct: 498 PDIYTYNIMIEGMCKAGKVEDGWDLF--CSLSLKGVKPNVIIYTTMISGFCRKGLKEEAD 555

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
            +  EM ++G  PN    + +I    + G    + ++   +R    + +A+TI
Sbjct: 556 ALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTI 608



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 109/449 (24%), Positives = 187/449 (41%), Gaps = 77/449 (17%)

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           E+M+      D+++Y  +I        L   L V  +M K   E D++   +L+ G C G
Sbjct: 104 ERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHG 163

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
            R+     L  +M       +   +  LI GL    K  +A  L+  +V  G + DL  Y
Sbjct: 164 KRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTY 223

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
            +++ GLC+                                    G +D    LL +MEK
Sbjct: 224 GTVVNGLCK-----------------------------------RGDIDLALSLLKKMEK 248

Query: 372 LKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEV 428
            K  + AD+  +   +  +   + +  AL++F E+  KG   +V  YN L+  L   G  
Sbjct: 249 GK--IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 306

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
             A  L   M    +  N ++FS  I   V+ G ++EA + ++++I+ S  P +  Y+ L
Sbjct: 307 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 366

Query: 489 TKGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFK----------------------- 520
             G C    +D A     +M+ +DC  NV +  T  K                       
Sbjct: 367 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGL 426

Query: 521 ------YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
                 Y   I  + ++G+ +   ++  +M  +G PP+ +  S ++ G+CK+G LE+A  
Sbjct: 427 VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALV 486

Query: 575 VFTNLRERKLLTEANTIVYDEILIEHMKK 603
           VF  L++ K+  E +   Y+ I+IE M K
Sbjct: 487 VFEYLQKSKM--EPDIYTYN-IMIEGMCK 512



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 156/339 (46%), Gaps = 36/339 (10%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQV----------------PELMDS---QGRIA 185
            KG + N  +YN+L  CL     +  A ++                  L+D+   +G++ 
Sbjct: 283 NKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLV 342

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E  ++ ++M +    PD+F Y+++I        LD    ++E M       +V+ Y TLI
Sbjct: 343 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 402

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G CK  RV  G ELFREM + G++ +   Y  LI+GL   G    A  + K +V  G  
Sbjct: 403 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVP 462

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  Y+ ++ GLC+  + +KA  +FE   +  + PD  T N ++    + G++++ + L
Sbjct: 463 PDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDL 522

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG------KEERIMMALDVFEELKGKGYSSVP---IYN 416
              +  LK  V  ++  +   + G      KEE    A  +F E+K  G  ++P    YN
Sbjct: 523 FCSLS-LK-GVKPNVIIYTTMISGFCRKGLKEE----ADALFREMKEDG--TLPNSGTYN 574

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
            L+ A L  G+   +  L  +MR      ++ + S+ I 
Sbjct: 575 TLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 613


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 143/638 (22%), Positives = 243/638 (38%), Gaps = 119/638 (18%)

Query: 89  ARFITDAFRKNQFQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKG 147
           A  I+D  R     +G +    L + R ++   LV +VL +  NP L  KFF WAG+Q G
Sbjct: 98  AVLISDVIRNTGDGFGHKTQKFLRQFREKLNETLVVDVLSLVKNPELGVKFFIWAGRQIG 157

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPE--LMDSQGRIAEML-EILEKMRRNLC----- 199
           Y H    Y+AL   L         D+VPE  L + +    E+L ++L  + R  C     
Sbjct: 158 YGHTGPVYHALLEVLGCG----GNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLW 213

Query: 200 ---------------KPDVFAYTAMIRVLAAERNLDACLRVWEEM--------------- 229
                          KP    Y A++RV      LD    V  EM               
Sbjct: 214 NVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCF 273

Query: 230 -----------------KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
                            +K+  + D + Y  +I GLC+        +    M+ +  + +
Sbjct: 274 VHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPN 333

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              Y +L+ G + + ++G+   +L  ++  G      I+NS+I   CR   +  AYKL +
Sbjct: 334 VVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLK 393

Query: 333 VTVQDDLAPDFSTVNPLL-----------------------------------------V 351
                   P +   N L+                                          
Sbjct: 394 KMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLAR 453

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YS 410
           C    G+ +  + ++ +M    F            L+    ++  A  +FEE+K      
Sbjct: 454 CLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVP 513

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            V  Y IL+ +  ++G +++A   F +M       N ++++  I  ++++  +  A E  
Sbjct: 514 DVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELF 573

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV---------------ASG 515
             ++    +P+V  Y  L  G CK G+I+ A  +     GN                   
Sbjct: 574 EMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRD 633

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P  F Y   +  +C++ + ++  ++L+ M+ EGC PN ++  A+I G CK G L+EA+ V
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 576 FTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
           FT + ER      N   Y  ++    K K  DL L  L
Sbjct: 694 FTKMSERGY--GPNVYTYSSLIDRLFKDKRLDLALKVL 729



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 175/399 (43%), Gaps = 32/399 (8%)

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           + + R L      +    +  EM       D   Y  +I  LC   +V     LF EMK 
Sbjct: 449 SNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS 508

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           N ++ D   Y +LI+     G + +A     ++V  G   ++  Y ++I    + ++   
Sbjct: 509 NHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSS 568

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE- 385
           A +LFE+ + +   P+  T   L+    + G+++   ++ A+M     +   D++ +F+ 
Sbjct: 569 ANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMR--GNADIPDVDMYFKI 626

Query: 386 ----------FLVG-------KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGE 427
                     F  G       K  ++  A D+ + +  +G     I Y+ L+    ++G+
Sbjct: 627 DDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGK 686

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           + +A  +F KM       N  ++S  I    +   +  A +  ++++E S  P+V  Y  
Sbjct: 687 LDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTE 746

Query: 488 LTKGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
           +  GLCK+G+ D A     MM  + C  NV +      Y   I    ++G+ +K +E++ 
Sbjct: 747 MIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVT------YTAMIDGFGKAGKVDKCLELMR 800

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           +M  +GC PN V    +I+  C  G L++A ++   +++
Sbjct: 801 QMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQ 839



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 171/412 (41%), Gaps = 63/412 (15%)

Query: 173 QVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
           +V  L+ +  ++     + E+M+ N   PDVF YT +I        L    + ++EM +D
Sbjct: 485 KVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRD 544

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
               +V+ Y  LI    K  ++   +ELF  M   G + +   Y  LI+G    G++ KA
Sbjct: 545 GCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKA 604

Query: 293 CDLLKDL--------VDSGYRADLG--------IYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
           C +   +        VD  ++ D G         Y +++ GLC+  +  +A  L +V   
Sbjct: 605 CQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSV 664

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK-----FSVAADLEKFFEFLVGKE 391
           +   P+    + L+    ++G++D    +  +M +       ++ ++ +++ F     K+
Sbjct: 665 EGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLF-----KD 719

Query: 392 ERIMMALDVFEE-LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
           +R+ +AL V    L+     +V IY  ++  L ++G+  +A  L   M            
Sbjct: 720 KRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMME----------- 768

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
                   E G       CH         P+V  Y  +  G  K G++D  + L+R  +G
Sbjct: 769 --------EKG-------CH---------PNVVTYTAMIDGFGKAGKVDKCLELMRQ-MG 803

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
                P    Y + I H C +G  +   ++L+EM Q   P +      +I G
Sbjct: 804 AKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEG 855



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 99/487 (20%), Positives = 204/487 (41%), Gaps = 50/487 (10%)

Query: 113 KLRRVTPDLVAEVLKVEN--NPTLASKFFHWAGK--QKGYKHNFASYNALAYCLSRNNLF 168
           K   V PD+    + +++     L  +   W  +  + G   N  +Y AL +   +    
Sbjct: 507 KSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKM 566

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
            +A+++ E+M S+G                C P+V  YTA+I        ++   +++  
Sbjct: 567 SSANELFEMMLSEG----------------CIPNVVTYTALIDGHCKSGQIEKACQIYAR 610

Query: 229 MK--KDLVEAD--------------VMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           M+   D+ + D              +  Y  L+ GLCK  +V    +L   M   G   +
Sbjct: 611 MRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPN 670

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
             +Y  LI+G    GK+ +A  +   + + GY  ++  Y+S+I  L + K+ D A K+  
Sbjct: 671 HIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLS 730

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK-----FSVAADLEKFFEFL 387
             +++  AP+      ++    ++G+ D  ++L++ ME+        +  A ++ F    
Sbjct: 731 RMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGF---- 786

Query: 388 VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
            GK  ++   L++  ++  KG + +   Y +L+      G +  A  L  +M+      +
Sbjct: 787 -GKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKH 845

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
              +   I+    + + + +    ++I E   VP + AY  L    CK G ++ A+ L +
Sbjct: 846 MAGYRKVIEGF--NREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHK 903

Query: 507 DCLGNVA-SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
           +     + S   +  Y+  I  +  + + +K  E+  +M + G  P   I   ++ G+ +
Sbjct: 904 EMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIR 963

Query: 566 HGTLEEA 572
               EEA
Sbjct: 964 INRWEEA 970



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 156/347 (44%), Gaps = 7/347 (2%)

Query: 166 NLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV 225
           N+F     V  L  +  ++ E  ++L+ M    C+P+   Y A+I        LD    V
Sbjct: 635 NIFTYGALVDGLCKAH-KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285
           + +M +     +V  Y +LI  L K  R+    ++   M EN    +  IY  +I+GL  
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
            GK  +A  L+  + + G   ++  Y ++I G  +  + DK  +L         AP+F T
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL- 404
              L+  C   G +D+  +LL +M++  +     +  + + + G     +++L + +E+ 
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYW--PKHMAGYRKVIEGFNREFIISLGLLDEIA 871

Query: 405 KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN--LEVNSLSFSIAIQCHVESGD 462
           +      +P Y IL+ +  + G ++ AL L  +M         +   +S  I+    +  
Sbjct: 872 ENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASK 931

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           + +A E +  +I+   +P ++ +  L KGL +I   + A+ L  DC+
Sbjct: 932 VDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQL-SDCI 977



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 35/190 (18%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK---------- 231
           G++ + LE++ +M    C P+   Y  +I    A   LD   ++ +EMK+          
Sbjct: 790 GKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGY 849

Query: 232 ------------------DLVEADVM-----AYVTLIMGLCKGGRVVRGHELFREMKE-- 266
                             D +  +V      AY  LI   CK GR+    EL +EM    
Sbjct: 850 RKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCT 909

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           +    D+ +Y  LIE L    KV KA +L  D++  G   +L I+  ++ GL R+ ++++
Sbjct: 910 SYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEE 969

Query: 327 AYKLFEVTVQ 336
           A +L +   Q
Sbjct: 970 ALQLSDCICQ 979


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 121/524 (23%), Positives = 232/524 (44%), Gaps = 74/524 (14%)

Query: 117 VTPDLVAEVL-KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA---- 171
           + P  V +VL +  ++  LA +FF++ G  + + H+ AS+  L + L +NNLF  A    
Sbjct: 67  IEPHHVEKVLIRTLDDSRLALRFFNFLGLHRNFHHSTASFCILIHSLLQNNLFWPASSLL 126

Query: 172 --------------------------------DQVPELMDSQGRIAEMLEILEKMRRNLC 199
                                           D + +      R+ + + ++  MR    
Sbjct: 127 QTLLLRGLNPHQIFENFFESYKKYKFSSSSGFDMLIQHYVQNKRVMDGVLVVNLMRDYGL 186

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
            P+V   +A++  LA  R     L +++ +    V+ D   Y  ++  LC+     +  E
Sbjct: 187 LPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKE 246

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           +  + + NG  +    Y V I GL    +V +A ++ + L + G +ADL  Y +++ GLC
Sbjct: 247 IINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLC 306

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           R+++F+   ++ +  ++    P  + V+ L+    +MG ++  F+LL ++ KL   V  +
Sbjct: 307 RIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKL--GVVPN 364

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
           L                                 +YN ++ +L + G++++A  LF  M 
Sbjct: 365 L--------------------------------FVYNSMINSLCKTGKLEEAELLFSVMA 392

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              L  N ++++I I        +  A    NK+IE     +V +YN +    CK G++ 
Sbjct: 393 ERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMK 452

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A +L ++ + +    PT   Y   I   C+ G   K  ++ +EMT +G  PN V  +A+
Sbjct: 453 MAELLFKEMV-DKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTAL 511

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           I G+C+   + EA K+F  + E K+L   N + Y+ ++  H ++
Sbjct: 512 ICGLCQINKMAEASKLFDEMVELKIL--PNEVTYNVLIEGHCRE 553



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 198/440 (45%), Gaps = 19/440 (4%)

Query: 177 LMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L+D  GR A++        KM        V++Y +MI        +     +++EM    
Sbjct: 406 LIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKG 465

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           ++  V  Y +LI G CK G V +  +L+ EM   GI  +   +  LI GL    K+ +A 
Sbjct: 466 LKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEAS 525

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            L  ++V+     +   YN +I G CR     +A++L +  ++  L+PD  T  PL+   
Sbjct: 526 KLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGL 585

Query: 354 AEMGRMDNFFKLLAQM----EKL-KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
              GR+    + +  +    ++L +    A L+ F      KE RI  AL   +E+ G+G
Sbjct: 586 CSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGF-----CKEGRIKEALVARQEMVGRG 640

Query: 409 YS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
               +  Y +L+   L   + +    L  +M G  ++ +++ ++I I   ++SG++ +A 
Sbjct: 641 LQMDLVSYAVLISGALNQND-RILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAF 699

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
           E    +I    VP+   Y  L  GL K G ++ A +L +  L   A  P    Y   + H
Sbjct: 700 EFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAI-PNHITYGCFLDH 758

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           + + G  E  +++ N M Q G   N V  + +I G C+ G  +EA K+   +    ++ +
Sbjct: 759 LTKEGNMENALQLHNAMLQ-GSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPD 817

Query: 588 ANTIVYDEILIEHMKKKTAD 607
              I Y   + E+ K+   D
Sbjct: 818 C--ITYSTFIYEYCKRGNVD 835



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 101/464 (21%), Positives = 184/464 (39%), Gaps = 80/464 (17%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++AE+L   ++M     KP V  YT++I     +  +    +++ EM    +  + + + 
Sbjct: 452 KMAELL--FKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFT 509

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI GLC+  ++    +LF EM E  IL +   Y VLIEG   EG   +A +LL +++  
Sbjct: 510 ALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKK 569

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D   Y  +I GLC   +  +A +            D      LL    + GR+   
Sbjct: 570 GLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKE- 628

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGY---------- 409
             L+A+ E +   +  DL  +   + G   + +RI+   ++  E+ GKG           
Sbjct: 629 -ALVARQEMVGRGLQMDLVSYAVLISGALNQNDRIL--FELLREMHGKGMQPDNVIYTIL 685

Query: 410 -----------------------SSVP---IYNILMGALLEIGEVKKALYLFGKM----- 438
                                    VP    Y  L+  L + G V +A  LF +M     
Sbjct: 686 IDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEA 745

Query: 439 ---------------RGLNLE--------------VNSLSFSIAIQCHVESGDILEACEC 469
                          +  N+E               N+++++I I+ + + G   EA + 
Sbjct: 746 IPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSFANTVTYNILIRGYCQIGKFQEAAKL 805

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
            + +I +  VP    Y+      CK G +DAAM +  +C+      P    +   I   C
Sbjct: 806 LDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDM-WECMLQRGLKPDRVVFNFLIHACC 864

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
            +GE ++ +++ N+M   G  P +    +++  + +   L + +
Sbjct: 865 LNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQLAQRARLTQVQ 908



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 144/331 (43%), Gaps = 38/331 (11%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S GR++E  E +  +     + D   YTA+++    E  +   L   +EM    ++ D++
Sbjct: 587 STGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLV 646

Query: 240 AYVTLIMG-LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           +Y  LI G L +  R++   EL REM   G+  D  IY +LI+G +  G + KA +    
Sbjct: 647 SYAVLISGALNQNDRIL--FELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYI 704

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           ++  GY  +   Y +++ GL +    ++A  LF+  +  +  P+  T    L    + G 
Sbjct: 705 MIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGN 764

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL 418
           M+N  +L   M                                  L+G  +++   YNIL
Sbjct: 765 MENALQLHNAM----------------------------------LQGS-FANTVTYNIL 789

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    +IG+ ++A  L   M G+ +  + +++S  I  + + G++  A +    +++   
Sbjct: 790 IRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGL 849

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
            P    +N L    C  GE+D A+ L  D +
Sbjct: 850 KPDRVVFNFLIHACCLNGELDRALQLRNDMM 880



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 118/286 (41%), Gaps = 29/286 (10%)

Query: 81  LQRHLSPIARFITDAFRKNQFQWGPQVVTELSKL---RRVTPDLVAEVLKVEN---NPTL 134
           LQ  L   A  I+ A  +N      +++ EL +    + + PD V   + ++    +  L
Sbjct: 641 LQMDLVSYAVLISGALNQND-----RILFELLREMHGKGMQPDNVIYTILIDGFIKSGNL 695

Query: 135 ASKF-FHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEK 193
              F F +    +GY  N  +Y AL      N LF+A           G + E   + ++
Sbjct: 696 KKAFEFWYIMIGEGYVPNSVTYTALV-----NGLFKA-----------GYVNEAKLLFKR 739

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M      P+   Y   +  L  E N++  L++   M +    A+ + Y  LI G C+ G+
Sbjct: 740 MLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSF-ANTVTYNILIRGYCQIGK 798

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
                +L   M   G++ D   Y   I      G V  A D+ + ++  G + D  ++N 
Sbjct: 799 FQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNF 858

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +I   C   + D+A +L    +   L P  ST + L+V  A+  R+
Sbjct: 859 LIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQLAQRARL 904


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 204/434 (47%), Gaps = 16/434 (3%)

Query: 181 QGRIAEMLEILEKMR-RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
            GR+ E  +I E M   + C P+V  YT +I  L  +  LD  + + + M +     +V+
Sbjct: 113 SGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVI 172

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  L+ GLCK GR  +G  L +EM   G   D  +Y  L+ GL    ++ +A +L++ +
Sbjct: 173 TYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLM 232

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           + SG    +  YNS++   CR KQ D+A++L +V  +    PD    N ++       R+
Sbjct: 233 IRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARL 292

Query: 360 DNFFKLLAQM-------EKLKFSVAAD-LEKFFEFLVGKEERIMMALDVFEELKGKGY-S 410
           D+   LL QM       + + +S   D L K  ++ V  + ++  A ++ E +K  G   
Sbjct: 293 DDAQALLKQMVAARCVPDVITYSTIIDGLCK--DWRVDADWKLEAACEILEMMKQTGCPP 350

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           +   Y +++  L    + ++AL L  +M    +  +  SFS+ I    +S D+  A +  
Sbjct: 351 NAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIF 410

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
             + E    P+  AY  L  GL K GE+D A+ +    + +   G   +   L  L  C 
Sbjct: 411 GMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGL--CG 468

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            G  E+ + ++  M  + C P+     A+I G+C+   +EEA ++F  +  +    E   
Sbjct: 469 VGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVG- 527

Query: 591 IVYDEILIEHMKKK 604
            VY+ ++ E  KKK
Sbjct: 528 -VYNVLVNELCKKK 540



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 192/432 (44%), Gaps = 18/432 (4%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  +  + ++  R   C P+ F Y ++I  L     LD    + +EM+   +   V  + 
Sbjct: 10  RAGQHGQAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHN 69

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL-VD 301
            +I GLCK GR       F+ +       D   + +L++ LV  G+V +A  + + +   
Sbjct: 70  GVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTS 129

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           S    ++  Y ++I GLC+  + D+A +L ++  +    P+  T + L+    + GR D 
Sbjct: 130 SQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDK 189

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
            F LL +M +  F    D+  +   L G  K  R+  AL++ + +   G Y +V  YN L
Sbjct: 190 GFTLLQEMTRRGFQ--PDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSL 247

Query: 419 MGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           M       +V +A  L   M  RG   +V + +  IA  C     D  +A     +++  
Sbjct: 248 MELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQA--LLKQMVAA 305

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-----LGNVASGPTEFKYALTILHVCRS 531
             VP V  Y+ +  GLCK   +DA   L   C     +      P    YA+ I  +CR+
Sbjct: 306 RCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRA 365

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
            ++++ + +L  M      P+    S +I  +CK   L+ A K+F  + ER+   + N +
Sbjct: 366 RKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERE--CKPNPV 423

Query: 592 VYDEILIEHMKK 603
            Y   LI+ + K
Sbjct: 424 AY-AALIDGLSK 434



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 153/352 (43%), Gaps = 43/352 (12%)

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           L + G+  +  +LFRE +    + +   YG LI GL   GK+ +A +LL ++ D G    
Sbjct: 8   LVRAGQHGQAVQLFREER---CVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPG 64

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           + ++N +I GLC+  +F  A   F+        PD  T N L+    + GR++  F++  
Sbjct: 65  VAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFE 124

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE 427
            M                                     +   +V  Y  ++  L + G+
Sbjct: 125 SMHT---------------------------------SSQCLPNVVTYTTVINGLCKDGK 151

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           + +A+ L   M       N +++S+ ++   ++G   +      ++      P V  YN 
Sbjct: 152 LDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNT 211

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           L  GLCK   +D A+ LV+     + SG  PT   Y   +   CRS + ++   ++  M+
Sbjct: 212 LLNGLCKSRRLDEALELVQL---MIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMS 268

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           + GCPP+ +  + +I+G+C+   L++A+ +   +   + +   + I Y  I+
Sbjct: 269 ERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCV--PDVITYSTII 318



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 146/375 (38%), Gaps = 60/375 (16%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
           ++G++ +   YN L   L ++     A ++ +LM   G                   ++ 
Sbjct: 199 RRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVD 258

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
               +++ M    C PDV  Y  +I  L  +  LD    + ++M       DV+ Y T+I
Sbjct: 259 RAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTII 318

Query: 246 MGLCKGGRV------VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            GLCK  RV          E+   MK+ G   +   Y V+IEGL    K  +A  LL+ +
Sbjct: 319 DGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRM 378

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +DS    DL  ++ +IG LC+    D AYK+F +  + +  P     NP+    A    +
Sbjct: 379 IDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKP-----NPV----AYAALI 429

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
           D   K              +++K              A+ VFE +       V  YN ++
Sbjct: 430 DGLSK------------GGEVDK--------------AVRVFELMVESFRPGVATYNSVL 463

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L  +G +++A+ +   M       +  S+   I+       + EA E    +      
Sbjct: 464 DGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFA 523

Query: 480 PSVAAYNCLTKGLCK 494
             V  YN L   LCK
Sbjct: 524 MEVGVYNVLVNELCK 538



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 109/232 (46%), Gaps = 1/232 (0%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +D+  ++    EILE M++  C P+   Y  +I  L   R     L +   M    V  D
Sbjct: 327 VDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPD 386

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           + ++  +I  LCK   +   +++F  M E     +   Y  LI+GL   G+V KA  + +
Sbjct: 387 LSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE 446

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            +V+S +R  +  YNS++ GLC V + ++A ++ E  +  +  PD ++   L+     + 
Sbjct: 447 LMVES-FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVS 505

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY 409
            ++  ++L   +E   F++   +       + K++R+  A  V  +L   GY
Sbjct: 506 CVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGY 557



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 2/196 (1%)

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y  L+  L + G++ +A  L  +MR   +       +  I+   ++G   +A      + 
Sbjct: 33  YGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVA 92

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                P +  +N L   L K G ++ A  +      +    P    Y   I  +C+ G+ 
Sbjct: 93  GTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKL 152

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           ++ IE+L+ M + GC PN +  S ++ G+CK G  ++   +   +  R    + + I+Y+
Sbjct: 153 DRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGF--QPDVIMYN 210

Query: 595 EILIEHMKKKTADLVL 610
            +L    K +  D  L
Sbjct: 211 TLLNGLCKSRRLDEAL 226



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 11/120 (9%)

Query: 486 NCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           NC    L + G+   A+ L R+  C+      P EF Y   I  +C++G+ ++  E+L+E
Sbjct: 2   NCALNLLVRAGQHGQAVQLFREERCV------PNEFTYGSLIHGLCKAGKLDQAYELLDE 55

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           M   G PP   + + +I G+CK G   +A   F  +   K   +   I+   IL++ + K
Sbjct: 56  MRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPD---IITFNILVDALVK 112



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 28/205 (13%)

Query: 111 LSKLRR-----VTPDL-----VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAY 160
           L+ LRR     V PDL     V   L   ++   A K F    +++  K N  +Y AL  
Sbjct: 372 LALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERE-CKPNPVAYAALID 430

Query: 161 CLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLD 220
            LS+      A +V ELM            +E  R     P V  Y +++  L     ++
Sbjct: 431 GLSKGGEVDKAVRVFELM------------VESFR-----PGVATYNSVLDGLCGVGRIE 473

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280
             +R+ E M       D  +Y  LI GLC+   V   +ELF+ ++  G  ++  +Y VL+
Sbjct: 474 EAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLV 533

Query: 281 EGLVGEGKVGKACDLLKDLVDSGYR 305
             L  + ++  A  +   L+++GY+
Sbjct: 534 NELCKKKRLSDAHGVANKLIEAGYK 558


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 117/474 (24%), Positives = 208/474 (43%), Gaps = 66/474 (13%)

Query: 130 NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLE 189
           + P L   FF WA  + G  HN  S N     L R N                R  E L 
Sbjct: 2   DKPELVLLFFDWARSRVG--HNVFSCNCALDMLCRLN----------------RRQEALA 43

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +       +C P+ F Y  +IR  ++  +LD  +++ EEMK    E + + + TL+ GLC
Sbjct: 44  LFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLC 103

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
             GRVV   E FR M ++    D   Y  L+  L   GK  +A  +L+++V  G   D  
Sbjct: 104 DAGRVVEALEHFRAMAKD-CAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTV 162

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            ++++I GLC+    ++A+++ E  +Q                   MG  D  F      
Sbjct: 163 TFSTLIDGLCKFGSEEQAFRVLEDVIQRG-----------------MGNSDAAF------ 199

Query: 370 EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEV 428
                      E   + L  K   + +A  V   +  KG++ +V ++N+++    +  ++
Sbjct: 200 -----------ETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDL 248

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
             A  L   M       N  +F+I I    ++  + EA +   K++     P+V  Y+ +
Sbjct: 249 DSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTV 308

Query: 489 TKGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
             GLCK G++D A     +M  R+C  NV +      + + I  +C++   E+  ++ + 
Sbjct: 309 INGLCKQGQVDDAYELFQLMERRNCPPNVVT------HNILIDGLCKAKRIEEARQLYHR 362

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           M + GC P+ +  +++I G+CK   ++EA ++F  + E   ++ AN + Y  + 
Sbjct: 363 MRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESG-VSAANAVTYSTLF 415



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 202/447 (45%), Gaps = 45/447 (10%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++LE M    C P+VF +T +I  L     +    ++ E+M       +V+ Y T+I GL
Sbjct: 253 KLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGL 312

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           CK G+V   +ELF+ M+      +   + +LI+GL    ++ +A  L   + ++G   D+
Sbjct: 313 CKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDI 372

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL-APDFSTVNPLLVCCAEMGRMDNFFKLLA 367
             YNS+I GLC+  Q D+A++LF+   +  + A +  T + L    A +GRM +  ++ +
Sbjct: 373 ITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFS 432

Query: 368 QMEKLKFSVAADLEKFFEFLV--GKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLE 424
            +    FS   DL  +   ++   K  R +  +++ EE+  KG+   V   + ++G L E
Sbjct: 433 MLVDKGFS--PDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFE 490

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV---PS 481
               ++A+ LF  M       ++L +++ ++    +    +A     ++I+       PS
Sbjct: 491 GNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPS 550

Query: 482 VAAYNCLTKGLCKIGEIDAAMML----------------------------------VRD 507
            +A + L + LC++G+ D A  L                                  V +
Sbjct: 551 SSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFE 610

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            + +    P      + I  +C + + +   E++  M++ GC P+   C+ +I G CK G
Sbjct: 611 AMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSG 670

Query: 568 TLEEARKVFTNLRERKLLTEANTIVYD 594
             + ARK+   + E  L  E N   +D
Sbjct: 671 RADLARKLLEEMTEAGL--EPNDTTHD 695



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 109/267 (40%), Gaps = 42/267 (15%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+A+   I   +      PD+  YT++I            + + EEM        V   
Sbjct: 422 GRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTL 481

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++ GL +G    R  +LF  M   G   D  IY +++EG+    K  KA  +L+ ++D
Sbjct: 482 SAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVID 541

Query: 302 S--------------------------------------GYRADLGIYNSIIGGLCRVKQ 323
                                                  G+ A +  YN ++ GL R+++
Sbjct: 542 KRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQR 601

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           +D+A ++FE  V    AP+ STVN ++       ++D+ ++L+ +M KL      D+E  
Sbjct: 602 WDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKL--GCCPDIETC 659

Query: 384 FEFLVG--KEERIMMALDVFEELKGKG 408
              + G  K  R  +A  + EE+   G
Sbjct: 660 NTLIGGYCKSGRADLARKLLEEMTEAG 686



 Score = 43.1 bits (100), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 50/126 (39%), Gaps = 16/126 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
            ++G+    +SYN L   LSR   +  A QV E M S G                  P++
Sbjct: 578 SERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGP----------------APEI 621

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
                +I  L +   +D    + + M K     D+    TLI G CK GR     +L  E
Sbjct: 622 STVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEE 681

Query: 264 MKENGI 269
           M E G+
Sbjct: 682 MTEAGL 687



 Score = 39.3 bits (90), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 57/134 (42%)

Query: 170 AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
           A D + E +   G+  +  ++L KM        V +Y  ++  L+  +  D   +V+E M
Sbjct: 553 AVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAM 612

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
                  ++     +I  LC   +V   +EL + M + G   D      LI G    G+ 
Sbjct: 613 VSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRA 672

Query: 290 GKACDLLKDLVDSG 303
             A  LL+++ ++G
Sbjct: 673 DLARKLLEEMTEAG 686


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/443 (23%), Positives = 202/443 (45%), Gaps = 51/443 (11%)

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYT 207
           Y+ N  ++N L + L  +N                + +E + ++++M    C+PD+F Y 
Sbjct: 165 YQPNTVTFNTLIHGLFLHN----------------KASEAVALIDRMVARGCQPDLFTYG 208

Query: 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
            ++  L    ++D  L + ++M+K  +EADV+ Y T+I  LC    V     LF EM   
Sbjct: 209 TVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNK 268

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           GI  +   Y  LI  L   G+   A  LL D+++     ++  ++++I    +  +  +A
Sbjct: 269 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 328

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
            KL++  ++  + PD  T + L+       R+D                  + +  FE +
Sbjct: 329 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD------------------EAKHMFELM 370

Query: 388 VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS 447
           + K+                 + +V  YN L+    +   V++ + LF +M    L  N+
Sbjct: 371 ISKD----------------CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 414

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
           ++++  IQ   ++GD   A +   K++     P +  Y+ L  GLCK G+++ A ++V +
Sbjct: 415 VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA-LVVFE 473

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            L      P  + Y + I  +C++G+ E   ++   ++ +G  PN +I + +ISG C+ G
Sbjct: 474 YLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKG 533

Query: 568 TLEEARKVFTNLRERKLLTEANT 590
             EEA  +F  ++E   L  + T
Sbjct: 534 LKEEADALFREMKEDGTLPNSGT 556



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 177/413 (42%), Gaps = 39/413 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I   L +L+KM +   + DV  YT +I  L   +N++  L ++ EM    +  +V+ 
Sbjct: 217 RGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 276

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI  LC  GR      L  +M E  I  +   +  LI+  V EGK+ +A  L  +++
Sbjct: 277 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 336

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 D+  Y+S+I G C   + D+A  +FE+ +  D  P+  T N L+          
Sbjct: 337 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI---------- 386

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILM 419
                                K F     K +R+   +++F E+  +G   +   YN L+
Sbjct: 387 ---------------------KGF----CKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 421

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L + G+   A  +F KM    +  + +++SI +    + G + +A      + +    
Sbjct: 422 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 481

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKII 538
           P +  YN + +G+CK G+++    L   C L      P    Y   I   CR G  E+  
Sbjct: 482 PDIYTYNIMIEGMCKAGKVEDGWDLF--CSLSLKGVKPNVIIYTTMISGFCRKGLKEEAD 539

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
            +  EM ++G  PN    + +I    + G    + ++   +R    + +A+TI
Sbjct: 540 ALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTI 592



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 109/449 (24%), Positives = 187/449 (41%), Gaps = 77/449 (17%)

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           E+M+      D+++Y  +I        L   L V  +M K   E D++   +L+ G C G
Sbjct: 88  ERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHG 147

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
            R+     L  +M       +   +  LI GL    K  +A  L+  +V  G + DL  Y
Sbjct: 148 KRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTY 207

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
            +++ GLC+                                    G +D    LL +MEK
Sbjct: 208 GTVVNGLCK-----------------------------------RGDIDLALSLLKKMEK 232

Query: 372 LKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEV 428
            K  + AD+  +   +  +   + +  AL++F E+  KG   +V  YN L+  L   G  
Sbjct: 233 GK--IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 290

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
             A  L   M    +  N ++FS  I   V+ G ++EA + ++++I+ S  P +  Y+ L
Sbjct: 291 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 350

Query: 489 TKGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFK----------------------- 520
             G C    +D A     +M+ +DC  NV +  T  K                       
Sbjct: 351 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGL 410

Query: 521 ------YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
                 Y   I  + ++G+ +   ++  +M  +G PP+ +  S ++ G+CK+G LE+A  
Sbjct: 411 VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALV 470

Query: 575 VFTNLRERKLLTEANTIVYDEILIEHMKK 603
           VF  L++ K+  E +   Y+ I+IE M K
Sbjct: 471 VFEYLQKSKM--EPDIYTYN-IMIEGMCK 496



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 156/339 (46%), Gaps = 36/339 (10%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQV----------------PELMDS---QGRIA 185
            KG + N  +YN+L  CL     +  A ++                  L+D+   +G++ 
Sbjct: 267 NKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLV 326

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E  ++ ++M +    PD+F Y+++I        LD    ++E M       +V+ Y TLI
Sbjct: 327 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 386

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G CK  RV  G ELFREM + G++ +   Y  LI+GL   G    A  + K +V  G  
Sbjct: 387 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVP 446

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  Y+ ++ GLC+  + +KA  +FE   +  + PD  T N ++    + G++++ + L
Sbjct: 447 PDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDL 506

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG------KEERIMMALDVFEELKGKGYSSVP---IYN 416
              +  LK  V  ++  +   + G      KEE    A  +F E+K  G  ++P    YN
Sbjct: 507 FCSLS-LK-GVKPNVIIYTTMISGFCRKGLKEE----ADALFREMKEDG--TLPNSGTYN 558

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
            L+ A L  G+   +  L  +MR      ++ + S+ I 
Sbjct: 559 TLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 597


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 203/405 (50%), Gaps = 8/405 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E  ++++ M +N   PDV+ Y  +I  L  +  +D   R+ +EM+   +  DV+ Y
Sbjct: 296 GWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTY 355

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G       ++G EL  +M+  G+  +   Y V+++  V EGK+  A + L+ + +
Sbjct: 356 NTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEE 415

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-VCCAEMGRMD 360
           SG+  D   +N++I G C+  +  +A+++ +   +  L  +  T+N +L   C E  ++D
Sbjct: 416 SGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGER-KLD 474

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
           + +KLL+   K  + V  D   +   ++G  K+ + + A+ +++E+K K    S+  YN 
Sbjct: 475 DAYKLLSSASKRGYFV--DEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNT 532

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++G L   G+  +++    ++    L  +  +++  I  +   G + +A + HNK+++ S
Sbjct: 533 MIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKS 592

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P +   N L +GLC  G +D A+ L    +           Y   I  +C+    E+ 
Sbjct: 593 FKPDLFTCNILLRGLCTEGMLDKALKLFNTWISK-GKAIDAVTYNTIISGLCKEDRFEEA 651

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
            ++L EM ++   P+    +AI+S +   G ++EA +  + + E+
Sbjct: 652 FDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQ 696



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 124/509 (24%), Positives = 223/509 (43%), Gaps = 63/509 (12%)

Query: 130 NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLE 189
           N P  A++ F+   K+   K N  + N L      N L R   + P +  S+   +++++
Sbjct: 153 NRPHHAAQIFNRM-KRLHLKPNLLTCNTLI-----NALVRYPSK-PSVYLSKAIFSDVIK 205

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +  K+  N        +  +I     E  L   + +  +MK      D ++Y T++  LC
Sbjct: 206 LGVKVNTN-------TFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLC 258

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K G++    +L  +MK NG+L +R  + +L+ G    G + +A  ++  +  +    D+ 
Sbjct: 259 KKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVW 318

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC---------------- 353
            YN +IGGLC+  + D+A++L +      L PD  T N L+  C                
Sbjct: 319 TYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKM 378

Query: 354 -------------------AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEE 392
                               + G+MDN    L +ME+  FS   D   F   + G  K  
Sbjct: 379 EGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFS--PDCVTFNTLINGYCKAG 436

Query: 393 RIMMALDVFEELKGKG--YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
           R+  A  + +E+  KG   +SV + N ++  L    ++  A  L          V+ +S+
Sbjct: 437 RLSEAFRMMDEMSRKGLKMNSVTL-NTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSY 495

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
              I  + + G  +EA +  +++ E   +PS+  YN +  GLC  G+ D ++  + + L 
Sbjct: 496 GTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELL- 554

Query: 511 NVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
              SG  P E  Y   IL  CR G+ EK  +  N+M ++   P+   C+ ++ G+C  G 
Sbjct: 555 --ESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGM 612

Query: 569 LEEARKVFTNLRERKLLTEANTIVYDEIL 597
           L++A K+F     +    +A  + Y+ I+
Sbjct: 613 LDKALKLFNTWISKGKAIDA--VTYNTII 639



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 105/218 (48%), Gaps = 16/218 (7%)

Query: 416 NILMGALLEIGEVKKALYL----FGKMRGLNLEVNSLSFSIAIQ-CHVESGDILEACECH 470
           N L+ AL+     K ++YL    F  +  L ++VN+ +F+I I  C +E+  + EA    
Sbjct: 178 NTLINALVRYPS-KPSVYLSKAIFSDVIKLGVKVNTNTFNILIYGCCIEN-KLSEAIGLI 235

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
            K+ + S  P   +YN +   LCK G+++ A  L+ D + N    P    + + +   C+
Sbjct: 236 GKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLD-MKNNGLLPNRNTFNILVSGYCK 294

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            G  ++  +V++ M Q    P+    + +I G+CK G ++EA ++   +   KLL +   
Sbjct: 295 LGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDV-- 352

Query: 591 IVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
           + Y+ ++             S LK F L  K++ KG K
Sbjct: 353 VTYNTLINGCFD------CSSSLKGFELIDKMEGKGVK 384



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 61/130 (46%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ +  +   KM +   KPD+F    ++R L  E  LD  L+++          D + 
Sbjct: 575 EGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVT 634

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I GLCK  R     +L  EM+E  +  D   Y  ++  L   G++ +A + +  +V
Sbjct: 635 YNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIV 694

Query: 301 DSGYRADLGI 310
           + G   D  I
Sbjct: 695 EQGKLQDQTI 704



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 81/180 (45%), Gaps = 4/180 (2%)

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV---ESGDILEACECH 470
           I +  +GA +       A  +F +M+ L+L+ N L+ +  I   V       +  +    
Sbjct: 141 ILDTSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIF 200

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
           + +I++    +   +N L  G C   ++  A+ L+   + + +  P    Y   +  +C+
Sbjct: 201 SDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGK-MKDFSCFPDNVSYNTILDVLCK 259

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            G+  +  ++L +M   G  PN    + ++SG CK G L+EA +V   + +  +L +  T
Sbjct: 260 KGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWT 319


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/481 (23%), Positives = 215/481 (44%), Gaps = 26/481 (5%)

Query: 111 LSKLRR-VTPDLVAEVLKVENNPTLASKFFHWAGKQK-GYKHNFASYNALAYCLSRNNLF 168
           L +LRR ++ D V ++ +   +  LA + F      + G++H+  + NAL    +R    
Sbjct: 76  LDRLRREISTDAVVKIFQCLKDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRH 135

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
           R A                  +L+     + +PDV  +  +I      R  +    V  E
Sbjct: 136 REAGN----------------LLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVIRE 179

Query: 229 MKKDLVEADVMAYVTLIM-GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
           M++D   A  +    L++ GLCK G+V+   + F  ++ + + +  A + +LI GLV  G
Sbjct: 180 MEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRS-MPVSAATFSILINGLVKAG 238

Query: 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
            + +A  L ++   +G   D+  Y +I+  L + K+  +A  L E    +   P  +T N
Sbjct: 239 MMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYN 298

Query: 348 PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELK 405
            LL    +MGR++    LL ++  +      D+  +   +  +GKE+R   A  +F+E+ 
Sbjct: 299 ALLNGLCKMGRLEEAIDLLRKI--VDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMA 356

Query: 406 GKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
            +G +     Y  L+  LL+ G++ +A  ++  M       + ++ S  I    ++G I 
Sbjct: 357 SRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIG 416

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
            A      +      P+   Y+ L  GLCK  ++D A+ ++   +      P    Y + 
Sbjct: 417 AAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQ-MKKAFCTPDTITYNIL 475

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           I  +C+SG+ E      +EM + GC P+    + +ISG+CK G  + A  V  ++   + 
Sbjct: 476 IDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSRF 535

Query: 585 L 585
           +
Sbjct: 536 V 536



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 189/401 (47%), Gaps = 13/401 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + +   + ++   N C  D+  YTA++  LA  + +   + + E++  +     +  Y
Sbjct: 238 GMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATY 297

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLCK GR+    +L R++ +NG   D   Y  LI+GL  E +  +A  L K++  
Sbjct: 298 NALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMAS 357

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   Y ++I GL +  +  +A  +++        PD  T++ ++   ++ GR+  
Sbjct: 358 RGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGA 417

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS--VPIYNILM 419
             ++   ME    +    +       + K  ++  AL++  ++K K + +     YNIL+
Sbjct: 418 AVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMK-KAFCTPDTITYNILI 476

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L + G+V+ A   F +M     + +  +++I I    ++G+   AC     + +MS  
Sbjct: 477 DGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAAC---GVLDDMSS- 532

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKII 538
            S   Y+ L  GLCK G+++   ML  +     VA+  T  +    I H+C++   ++ +
Sbjct: 533 -SRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTRTRL---IFHLCKANRVDEAV 588

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            + N + +EG  P+    ++IIS + K G + E + V+  +
Sbjct: 589 SLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVYQEM 628



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 149/355 (41%), Gaps = 42/355 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E +++L K+  N C PDV  YT++I  L  E+      ++++EM    +  D + Y
Sbjct: 308 GRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCY 367

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GL + G++ +   +++ M  +G + D      +I+GL   G++G A  + K +  
Sbjct: 368 TALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEA 427

Query: 302 SG-------YRA----------------------------DLGIYNSIIGGLCRVKQFDK 326
            G       Y A                            D   YN +I GLC+    + 
Sbjct: 428 RGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEA 487

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A   F+  ++    PD  T N L+    + G  D    +L  M   +F  ++ ++   + 
Sbjct: 488 ARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSRFVYSSLVDGLCK- 546

Query: 387 LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
             GK E   M   +F E++  G ++      L+  L +   V +A+ LF  +R   +  +
Sbjct: 547 -SGKLEGGCM---LFHEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMP-H 601

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
             +++  I   ++SG + E    + ++    + P    YN L  G+     +D A
Sbjct: 602 PYAYNSIISALIKSGKVNEGQAVYQEMTRWWK-PDRVTYNALLNGMIGANRMDRA 655



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 144/347 (41%), Gaps = 39/347 (11%)

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G++  +   N+++    R K+  +A  L +  +     PD  T N L+         +  
Sbjct: 114 GFQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEA 173

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIYNILMG 420
           F ++ +ME+  F VA  L+     L G  K  +++ A+D FE ++     S   ++IL+ 
Sbjct: 174 FAVIREMEE-DFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILIN 232

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L++ G + +A  L  +       ++  +++  +    ++  I EA     KI      P
Sbjct: 233 GLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTP 292

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVR------------------DCLGNVASGPTEFK-- 520
           ++A YN L  GLCK+G ++ A+ L+R                  D LG        +K  
Sbjct: 293 TIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLF 352

Query: 521 --------------YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
                         Y   I  + ++G+  +   V   MT  GC P+ V  S +I G+ K 
Sbjct: 353 KEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKA 412

Query: 567 GTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
           G +  A ++F ++  R L    N +VY  ++    K +  D  L  L
Sbjct: 413 GRIGAAVRIFKSMEARGL--APNEVVYSALIHGLCKARKMDCALEML 457



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 40/195 (20%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G +       ++M    CKPDV+ Y  +I  L    N DA   V ++M      +    
Sbjct: 482 SGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDM-----SSSRFV 536

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGIL-----------------IDRAI-------- 275
           Y +L+ GLCK G++  G  LF EM+ +G+                  +D A+        
Sbjct: 537 YSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRK 596

Query: 276 --------YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
                   Y  +I  L+  GKV +   + +++    ++ D   YN+++ G+    + D+A
Sbjct: 597 EGMPHPYAYNSIISALIKSGKVNEGQAVYQEMT-RWWKPDRVTYNALLNGMIGANRMDRA 655

Query: 328 -YKLFEVTVQDDLAP 341
            Y   E+T +  + P
Sbjct: 656 HYYYLEMTGRGYVPP 670


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/456 (23%), Positives = 204/456 (44%), Gaps = 27/456 (5%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G+  +  +YN L   L +      A ++   M S+G                C P+V 
Sbjct: 65  ERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRG----------------CVPNVV 108

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEA--DVMAYVTLIMGLCKGGRVVRGHELFR 262
            Y+ +I  L     +D    + +EM +   +   +++ Y + + GLCK        EL R
Sbjct: 109 TYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMR 168

Query: 263 EMKENGILI--DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
            +++  + +  D   +  LI+GL   G++ +AC +  D++  GY  ++  YN+++ GLC+
Sbjct: 169 SLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCK 228

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS---VA 377
             + ++A+ + E  V   + PD  T + L+    +  R+D   +LL  M     +   + 
Sbjct: 229 ADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLV 288

Query: 378 ADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL 434
            D   F   + G  K      A  +FEE+  K     V  +  L+  L + G+V+ A  +
Sbjct: 289 PDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDI 348

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
              M  L +  N ++++  +    +SG I EAC+   +++    VP    Y  L   LC+
Sbjct: 349 LDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCR 408

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
               D A+ LV + L +    P    Y + +  + +SG+ E+ I VL EM  +G  P+  
Sbjct: 409 ASRTDDALQLVSE-LKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSF 467

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             +A  SG+ + G L    ++   +  + +L +A T
Sbjct: 468 TFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATT 503



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 210/437 (48%), Gaps = 21/437 (4%)

Query: 182 GRIAEMLEILE-KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           G  A  LEI   +M R+   P +  Y  +I  L    +L A + ++EE+ +     DV+ 
Sbjct: 15  GDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVT 74

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI  LCK G +     L  +M   G + +   Y VLI GL   G++ +A +L++++ 
Sbjct: 75  YNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMT 134

Query: 301 DSGYRA--DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD---LAPDFSTVNPLLVCCAE 355
                   ++  YNS + GLC+     +A +L   +++D    ++PD  T + L+    +
Sbjct: 135 RKSCDVLPNIITYNSFLDGLCKQSMTAEACELMR-SLRDGSLRVSPDTVTFSTLIDGLCK 193

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SV 412
            G++D    +   M  +      ++  +   + G  K +++  A  + E +  KG +  V
Sbjct: 194 CGQIDEACSVFDDM--IAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDV 251

Query: 413 PIYNILMGALLEIGEVKKALYLFGKM--RGLNLEV---NSLSFSIAIQCHVESGDILEAC 467
             Y++L+ A  +   V +AL L   M  RG    V   + ++F+I I    ++G+  +A 
Sbjct: 252 ITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQAS 311

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
               +++  +  P V  +  L  GLCK G+++AA  ++ D +GN+   P    Y   +  
Sbjct: 312 ALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDIL-DLMGNLGVPPNVVTYNALVHG 370

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           +C+SG  E+  + L EM   GC P+ +   +++  +C+    ++A ++ + L+      +
Sbjct: 371 LCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGW--D 428

Query: 588 ANTIVYDEILIEHMKKK 604
            +T+ Y+ IL++ + K 
Sbjct: 429 PDTVTYN-ILVDGLWKS 444



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/405 (25%), Positives = 183/405 (45%), Gaps = 16/405 (3%)

Query: 228 EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
           EM +D V   ++ Y T+I GLCK   +  G ELF E+ E G   D   Y  LI+ L   G
Sbjct: 27  EMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAG 86

Query: 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD--DLAPDFST 345
            + +A  L  D+   G   ++  Y+ +I GLC+V + D+A +L +   +   D+ P+  T
Sbjct: 87  DLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIIT 146

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE 403
            N  L    +        +L+  +      V+ D   F   + G  K  +I  A  VF++
Sbjct: 147 YNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDD 206

Query: 404 LKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
           +   GY  +V  YN L+  L +  ++++A  +   M    +  + +++S+ +    ++  
Sbjct: 207 MIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASR 266

Query: 463 ILEACECHNKIIEMSQVPSV-----AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
           + EA E  + +      P+V       +N L  G CK G  + A  L  + +      P 
Sbjct: 267 VDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQ-PD 325

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
              +   I  +C++G+ E   ++L+ M   G PPN V  +A++ G+CK G +EEA +   
Sbjct: 326 VMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLE 385

Query: 578 NLRERKLLTEANTIVYDEILIEHMKKKTADLVL---SGLKFFGLE 619
            +     +   ++I Y  ++    +    D  L   S LK FG +
Sbjct: 386 EMVSSGCV--PDSITYGSLVYALCRASRTDDALQLVSELKSFGWD 428



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 159/355 (44%), Gaps = 41/355 (11%)

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFR-EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           V  Y  ++  LC+ G   R  E+FR EM  +G+      Y  +I GL     +G   +L 
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELF 60

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
           ++LV+ G+  D+  YN++I  LC+    ++A +L          P+  T + L+    ++
Sbjct: 61  EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKV 120

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN 416
           GR+D   +L+ +M +    V  ++  +  FL G  ++ M A                   
Sbjct: 121 GRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTA------------------- 161

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEV--NSLSFSIAIQCHVESGDILEACECHNKII 474
                        +A  L   +R  +L V  ++++FS  I    + G I EAC   + +I
Sbjct: 162 -------------EACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMI 208

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
               VP+V  YN L  GLCK  +++ A  ++   +    + P    Y++ +   C++   
Sbjct: 209 AGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVT-PDVITYSVLVDAFCKASRV 267

Query: 535 EKIIEVLNEMTQEGCPPN-----EVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           ++ +E+L+ M   GC PN     +V  + +I+G CK G  E+A  +F  +  + L
Sbjct: 268 DEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNL 322



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 144/332 (43%), Gaps = 6/332 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+I E   + + M      P+V  Y A++  L     ++    + E M    V  DV+ Y
Sbjct: 195 GQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITY 254

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENG-----ILIDRAIYGVLIEGLVGEGKVGKACDLL 296
             L+   CK  RV    EL   M   G     ++ D+  + +LI G    G   +A  L 
Sbjct: 255 SVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALF 314

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
           +++V    + D+  + ++I GLC+  Q + A  + ++     + P+  T N L+    + 
Sbjct: 315 EEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKS 374

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-Y 415
           GR++   + L +M        +       + + +  R   AL +  ELK  G+    + Y
Sbjct: 375 GRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTY 434

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           NIL+  L + G+ ++A+ +  +M G   + +S +F+        SG++    E    ++ 
Sbjct: 435 NILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLA 494

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
              +P     + +   +C+ G++D    ++++
Sbjct: 495 KGMLPDATTCSSILDWVCRSGKLDDVKAMIKE 526



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 86/189 (45%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++    +IL+ M      P+V  Y A++  L     ++   +  EEM       D + Y
Sbjct: 340 GQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITY 399

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +L+  LC+  R     +L  E+K  G   D   Y +L++GL   GK  +A  +L+++V 
Sbjct: 400 GSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVG 459

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G++ D   + +   GL R        +L  V +   + PD +T + +L      G++D+
Sbjct: 460 KGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSGKLDD 519

Query: 362 FFKLLAQME 370
              ++ + E
Sbjct: 520 VKAMIKEFE 528



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 22/171 (12%)

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           VA YN + + LC+ G+   A+ + R  +      PT   Y   I  +C+S +    +E+ 
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELF 60

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY-------- 593
            E+ + G  P+ V  + +I  +CK G LEEAR++  ++  R  +   N + Y        
Sbjct: 61  EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCV--PNVVTYSVLINGLC 118

Query: 594 -----DEI--LIEHMKKKTADLVLSGLKFFGL-----ESKLKAKGCKLLSS 632
                DE   LI+ M +K+ D++ + + +        +  + A+ C+L+ S
Sbjct: 119 KVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS 169


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 138/589 (23%), Positives = 247/589 (41%), Gaps = 50/589 (8%)

Query: 16  YGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSD 75
           + H K S    +    LFS R S ++ N +SEPH S P          LP   T +P   
Sbjct: 2   FKHHKTSPRMAS--HALFSLRGSHQSFNLSSEPHPSSP----------LPISSTTNP--- 46

Query: 76  PKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTL 134
                    +S I+  ++        +W  +  +EL  L  ++ P  V  +L+   N   
Sbjct: 47  -----FPELVSKISTILSSP------KW--EHSSELCHLSPKLKPHHVVNILQTHKNTDS 93

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM----DSQGRIAEMLEI 190
             +FF W  ++K +KH+ + + ++   L R+ LF  AD V  LM     ++G +  + + 
Sbjct: 94  VLRFFFWISRRKFFKHDMSCFVSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQF 153

Query: 191 LEKMRR------NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           L ++         LC     ++T ++  L     +D    ++ +M    +   ++ + T+
Sbjct: 154 LSEINSKYDFGYTLC-----SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTM 208

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LCK GRV     +   +       +   Y  LI G      +  A  +   +V  G 
Sbjct: 209 INILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGC 268

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             +   Y+++I GLC   + ++A  + E  VQ  + P   T    LV   + G      +
Sbjct: 269 DPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVE 328

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGA 421
           LL +M+K       +++ F   + G  ++ +  +A+ ++ ++   G     + YN L+  
Sbjct: 329 LLGKMKKR--GCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQ 386

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L   G  + A  +F  M       ++ +++  I+C    GDI +A    +K+++    P+
Sbjct: 387 LCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPN 446

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V  YN L  G CK G ++ AM L+    GN    P  + Y   I    R G+ E    + 
Sbjct: 447 VITYNTLIYGYCKQGNLNNAMRLLEIMKGN-GLKPDAWTYTELISGFSRGGKLEHATSLF 505

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             M + G  PN V  +AII G      +++A  +F  + E   L  + T
Sbjct: 506 YGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQT 554



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 208/461 (45%), Gaps = 16/461 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+GR+ E +++LE+M +   +P V+ YT  +  L         + +  +MKK     ++ 
Sbjct: 284 SEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQ 343

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            +  LI GL + G+      L+ +M  +G++     Y  LI  L  EG+   A  + K +
Sbjct: 344 TFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWM 403

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G       YN II   C +    KA  +F+  ++   +P+  T N L+    + G +
Sbjct: 404 LSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNL 463

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YN 416
           +N  +LL  M+     +  D   + E + G  +  ++  A  +F  +   G S   + Y 
Sbjct: 464 NNAMRLLEIMKG--NGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYT 521

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++     + +V  AL LF KM       +S ++++ I    ++  I EA     K+++ 
Sbjct: 522 AIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQ 581

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE- 535
             +P+V  Y     GLC+ G    A  +  + +      P  + Y+  I  +C+ G AE 
Sbjct: 582 GLLPNVITYTSFIDGLCRNGRTGLAFKIFHE-MEKRNYFPNLYTYSSLIYGLCQEGRAED 640

Query: 536 -KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
            ++  +L  +T  GC PN    + ++ G+C  G   EA ++  +++++ L  + +  +Y 
Sbjct: 641 AEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGL--QPSEEIYR 698

Query: 595 EILI---EHMKKKTADLVLSGLKFFGLE---SKLKAKGCKL 629
            +LI   +++K ++A  +   +   G +   S  KA  C L
Sbjct: 699 ALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICAL 739



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 100/462 (21%), Positives = 197/462 (42%), Gaps = 49/462 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G  +E +E+L KM++  C P++  +TA+I  L+ +   +  + ++ +M  D +    + Y
Sbjct: 321 GCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTY 380

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI  LC  GR      +F+ M  +G L     Y  +I+     G + KA  +   ++ 
Sbjct: 381 NALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLK 440

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G   ++  YN++I G C+    + A +L E+   + L PD  T   L+   +  G++++
Sbjct: 441 AGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEH 500

Query: 362 FFKLLAQMEKLKFS-----VAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIY 415
              L   M +   S       A ++ +F        ++  AL +F ++   G   S   Y
Sbjct: 501 ATSLFYGMMEHGISPNHVTYTAIIDGYFNL-----AKVDDALALFWKMVESGNLPSSQTY 555

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N+++    +   + +A    GKM    L  N ++++  I     +G    A +  +++ +
Sbjct: 556 NVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEK 615

Query: 476 MSQVPSVAAYNCLTKGLCKIGEI-DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
            +  P++  Y+ L  GLC+ G   DA M  +   L +    P    Y   +  +C  G  
Sbjct: 616 RNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRC 675

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISG-------------------------------- 562
            +  +++  M ++G  P+E I  A++ G                                
Sbjct: 676 YEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKAL 735

Query: 563 ---MCKHGTLEEARKVFTNLRERKLLTE--ANTIVYDEILIE 599
              +CK   +EEA+ +F  + E+   ++  A T++ D +L E
Sbjct: 736 ICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKE 777



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 157/379 (41%), Gaps = 49/379 (12%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I + + I +KM +    P+V  Y  +I     + NL+  +R+ E MK + ++ D   Y
Sbjct: 426 GDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTY 485

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G  +GG++     LF  M E+GI  +   Y  +I+G     KV  A  L   +V+
Sbjct: 486 TELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVE 545

Query: 302 SGYRADLGIYN-----------------------------------SIIGGLCRVKQFDK 326
           SG       YN                                   S I GLCR  +   
Sbjct: 546 SGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGL 605

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN--FFKLLAQMEKLKFSVAADLEKFF 384
           A+K+F    + +  P+  T + L+    + GR ++   + LLA++    +    +++ + 
Sbjct: 606 AFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLT--HYGCEPNVDTYT 663

Query: 385 EFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
             + G   E R   A  +   ++ KG   S  IY  L+    +  +V+ AL +F  M  L
Sbjct: 664 TLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTL 723

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACEC-HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             +++ LS   A+ C +   + +E  +C    ++E        A+  L  GL K GE D 
Sbjct: 724 GFQLH-LSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDL 782

Query: 501 AMMLV-----RDCLGNVAS 514
            + L+     R+C  N  +
Sbjct: 783 CLKLLHVMESRNCTLNFQT 801



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 15/212 (7%)

Query: 134 LASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEK 193
           LA K FH   K + Y  N  +Y++L Y L +    RA D            AEM  +L +
Sbjct: 605 LAFKIFHEMEK-RNYFPNLYTYSSLIYGLCQEG--RAED------------AEMYNLLAR 649

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           +    C+P+V  YT +++ L  E       ++   M+K  ++     Y  L++G CK  +
Sbjct: 650 LTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLK 709

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           V     +F  M   G  +  + Y  LI  L  E  + +A  + + +++  + +D   +  
Sbjct: 710 VESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTV 769

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           ++ GL +  + D   KL  V    +   +F T
Sbjct: 770 LLDGLLKEGETDLCLKLLHVMESRNCTLNFQT 801


>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
 gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
 gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/495 (24%), Positives = 224/495 (45%), Gaps = 30/495 (6%)

Query: 114 LRRVTPDLVAEVLK---VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNN---- 166
           L +++P+ V+ VLK   +   P +A  FF W+ KQK Y HN   Y +L   L+       
Sbjct: 111 LIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVDVLALAKDVDR 170

Query: 167 ---------------LFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIR 211
                             AA+ + +     G + E+L +  KM+ N  +P ++ Y  ++ 
Sbjct: 171 IRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMN 230

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
            L +   +D+  RV+E M+   ++ D++ Y T+I G CK G+  +  E  R+M+  G   
Sbjct: 231 GLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEA 290

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           D+  Y  +I+    +   G    L +++ + G +     ++ +IGGLC+  + ++ Y +F
Sbjct: 291 DKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVF 350

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG-- 389
           E  ++    P+ +    L+   A+ G +++  +LL +M    F    D+  +   + G  
Sbjct: 351 ENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLC 408

Query: 390 KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           K  R+  ALD F   +  G + +   Y+ L+  L + G V +A  LF +M       +S 
Sbjct: 409 KNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSY 468

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVP-SVAAYNCLTKGLCKIGEIDAAMMLVRD 507
            ++  I    +   + EA     ++ E      +V  Y  L  G+ K    + A+ L  D
Sbjct: 469 CYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLW-D 527

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            + +    PT   +      +C SG+  +  ++L+E+   G   +   C  +I+ +CK G
Sbjct: 528 MMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGVILDAA-CEDMINTLCKAG 586

Query: 568 TLEEARKVFTNLRER 582
            ++EA K+   + ER
Sbjct: 587 RIKEACKLADGITER 601


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 125/518 (24%), Positives = 225/518 (43%), Gaps = 68/518 (13%)

Query: 119 PDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177
           P L+  VL  V + P +A +FF WA +Q G+K +  +Y  +   L+RN L R+A  V E 
Sbjct: 47  PQLLVRVLNTVRHRPAVALRFFRWAERQTGFKRSELTYAVILDILARNGLMRSAYCVMEK 106

Query: 178 MDS----------------------QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           + S                      +  + + L +  KM      PD+     ++R+L  
Sbjct: 107 VVSVKMENGVVDVLILDLLLWIYAKKSMLEKCLLVFYKMVSKGMLPDLKNCNRVLRLL-- 164

Query: 216 ERNLDACLRVWEEMKKDLVEA----DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
            R+ D+ + V  E+   +VE      V+ Y T++   CK G+V    +L  +M++ G L 
Sbjct: 165 -RDRDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLP 223

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           +   Y VL+ GL   G++ +A +L+++++  G       Y+ +I G C   Q D+A +L 
Sbjct: 224 NDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLG 283

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE 391
           E  +     P   T N ++    + GR+                  +D  K  + +V K 
Sbjct: 284 EEMLSRGAVPTLVTYNTIMYGLCKWGRV------------------SDARKLLDVMVNK- 324

Query: 392 ERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
                  ++  +L          YN L+     +G + +A  LF ++R   L  + ++++
Sbjct: 325 -------NLMPDLVS--------YNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYN 369

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
             I      GD+  A    +++I+    P V  +  L +G CK+G +  A  L  + L N
Sbjct: 370 TLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEML-N 428

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
               P  F Y   I+   + G+  K   +  EM   G PP+ +  +  I G+ K G L+E
Sbjct: 429 RGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKE 488

Query: 572 ARKVFTNLRERKLLTEANT---IVYDEILIEHMKKKTA 606
           A ++   +    L+ +  T   I++  ++  H++K  A
Sbjct: 489 ASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARA 526



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 103/440 (23%), Positives = 197/440 (44%), Gaps = 9/440 (2%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +   G + +  E++++M R   +   + Y  +IR    +  LD   R+ EEM        
Sbjct: 235 LSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPT 294

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           ++ Y T++ GLCK GRV    +L   M    ++ D   Y  LI G    G +G+A  L  
Sbjct: 295 LVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFA 354

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           +L   G    +  YN++I GLCR+   D A +L +  ++    PD  T   L+    ++G
Sbjct: 355 ELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLG 414

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPI 414
            +    +L  +M  L   +  D   +   +VG  K      A  + EE+  +G+   +  
Sbjct: 415 NLPMAKELFDEM--LNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLIT 472

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YN+ +  L ++G +K+A  L  KM    L  + ++++  I  H+ +G + +A     +++
Sbjct: 473 YNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEML 532

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                PSV  Y  L       G +  A++   + +      P    Y   I  +C+  + 
Sbjct: 533 SKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFE-MHEKGVHPNVITYNALINGLCKVRKM 591

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           ++  +   EM  +G  PN+   + +I+  C  G  +EA +++ ++ +R++  ++ T    
Sbjct: 592 DQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCT---H 648

Query: 595 EILIEHMKKKTADLVLSGLK 614
             L++H+ K     V+  L+
Sbjct: 649 SALLKHLNKDYKSHVVRHLE 668



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 184/412 (44%), Gaps = 9/412 (2%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           ++DS   QG++ E L++L +M++  C P+   Y  ++  L+    L+    + +EM +  
Sbjct: 196 MLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLG 255

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +E     Y  LI G C+ G++     L  EM   G +     Y  ++ GL   G+V  A 
Sbjct: 256 LEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDAR 315

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            LL  +V+     DL  YN++I G  R+    +A+ LF       L P   T N L+   
Sbjct: 316 KLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGL 375

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSS 411
             MG +D   +L  +M  +K     D+  F   + G  K   + MA ++F+E+  +G   
Sbjct: 376 CRMGDLDVAMRLKDEM--IKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQP 433

Query: 412 VPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
               Y   +   L++G+  KA  +  +M       + +++++ I    + G++ EA E  
Sbjct: 434 DRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELV 493

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
            K++    VP    Y  +       G +  A  +  + L      P+   Y + I     
Sbjct: 494 KKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSK-GIFPSVVTYTVLIHSYAV 552

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
            G  +  I    EM ++G  PN +  +A+I+G+CK   +++A K FT ++ +
Sbjct: 553 RGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAK 604


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 190/462 (41%), Gaps = 60/462 (12%)

Query: 138 FFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRN 197
           FF WAG Q  Y H   SYN L                 E++   GR   +      M   
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLL----------------EVLAKSGRCDHVYGTYNDMLAA 46

Query: 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
            C P+ + Y  ++R L   +  +    V+  M       +V +Y  LI GLC+G +V   
Sbjct: 47  GCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEA 106

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
            EL  EM + G   +   YG L+ GL   GK+ +A DL   +V  G   D  +YN +I G
Sbjct: 107 AELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDG 166

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA---EMGRMDNFFKLLAQMEKLKF 374
             +     +AY+LFE  ++    P   T N LL   +   E GR+ + FK          
Sbjct: 167 FSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFK---------- 216

Query: 375 SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYL 434
                                      + L+     ++  +N L+    ++G++ +A  L
Sbjct: 217 ---------------------------DMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRL 249

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           F +MR L    + +S++  I+     G   EA     ++I     P + +YN L  G  K
Sbjct: 250 FLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSK 309

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
            G +D A+ L  + +      P  F Y+  I  +CR+G+      V  +M   G  P+  
Sbjct: 310 SGALDHAIKLFYE-IPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAA 368

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERK---LLTEANTIVY 593
           +   ++ G+C+   L E+ ++F  + + +   L+ E N ++Y
Sbjct: 369 VVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMY 410



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 135/331 (40%), Gaps = 38/331 (11%)

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           Y  L+E L   G+         D++ +G   +   Y  ++  LC+ ++F++A  +F    
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMA 79

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM 395
               +P+  + + L+       ++D   +LL +M                          
Sbjct: 80  AQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEM-------------------------- 113

Query: 396 MALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
                   + G    +V  Y  L+  L ++G++K+A+ LF +M       + + +++ I 
Sbjct: 114 --------IDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLID 165

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
              + GD+ EA     +++E   +P+V  YN L  G  + GE      L +D L      
Sbjct: 166 GFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDML-RQGCV 224

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P  F +   +   C+ G+  +   +  EM   GCPP+ V  + +I GMC  G   EA+++
Sbjct: 225 PNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRL 284

Query: 576 FTNLRERKLLTEANTIVYDEILIEHMKKKTA 606
              LRE         IV   ILI+   K  A
Sbjct: 285 ---LREMIRSGVGPDIVSYNILIDGYSKSGA 312



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 8/161 (4%)

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
            +LS++  ++   +SG        +N ++    VP+   Y  L + LC+    + A  + 
Sbjct: 16  GTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVF 75

Query: 506 RDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           R   G  A G  P  F Y++ I  +CR  + ++  E+LNEM   G  PN V   +++SG+
Sbjct: 76  R---GMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGL 132

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           CK G L+EA  +F+ +  R      + +VY+ +LI+   KK
Sbjct: 133 CKMGKLKEAVDLFSRMVYRG--CPPDGVVYN-VLIDGFSKK 170


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 135/574 (23%), Positives = 242/574 (42%), Gaps = 48/574 (8%)

Query: 31  GLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIAR 90
            LFS R S ++ N +SEPH S P          LP   T +P            +S I+ 
Sbjct: 15  ALFSLRGSHQSFNLSSEPHPSSP----------LPISSTTNP--------FPELVSKIST 56

Query: 91  FITDAFRKNQFQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYK 149
            ++        +W  +  +EL  L  ++ P  V  +L+   N     +FF W  ++K +K
Sbjct: 57  ILSSP------KW--EHSSELCHLSPKLKPHHVVNILQTHKNTDSVLRFFFWISRRKFFK 108

Query: 150 HNFASYNALAYCLSRNNLFRAADQVPELM----DSQGRIAEMLEILEKMRR------NLC 199
           H+ + + ++   L R+ LF  AD V  LM     ++G +  + + L ++         LC
Sbjct: 109 HDMSCFVSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLC 168

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
                ++T ++  L     +D    ++ +M    +   ++ + T+I  LCK GRV     
Sbjct: 169 -----SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKL 223

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           +   +       +   Y  LI G      +  A  +   +V  G   +   Y+++I GLC
Sbjct: 224 IMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLC 283

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
              + ++A  + E  VQ  + P   T    LV   + G      +LL +M+K       +
Sbjct: 284 SEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKR--GCVPN 341

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFG 436
           ++ F   + G  ++ +  +A+ ++ ++   G     + YN L+  L   G  + A  +F 
Sbjct: 342 IQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFK 401

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            M       ++ +++  I+C    GDI +A    +K+++    P+V  YN L  G CK G
Sbjct: 402 WMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQG 461

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            ++ AM L+    GN    P  + Y   I    R G+ E    +   M + G  PN V  
Sbjct: 462 NLNNAMRLLEIMKGN-GLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTY 520

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +AII G      +++A  +F  + E   L  + T
Sbjct: 521 TAIIDGYFNLAKVDDALALFWKMVESGNLPSSQT 554



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 208/461 (45%), Gaps = 16/461 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+GR+ E +++LE+M +   +P V+ YT  +  L         + +  +MKK     ++ 
Sbjct: 284 SEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQ 343

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            +  LI GL + G+      L+ +M  +G++     Y  LI  L  EG+   A  + K +
Sbjct: 344 TFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWM 403

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G       YN II   C +    KA  +F+  ++   +P+  T N L+    + G +
Sbjct: 404 LSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNL 463

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YN 416
           +N  +LL  M+     +  D   + E + G  +  ++  A  +F  +   G S   + Y 
Sbjct: 464 NNAMRLLEIMKG--NGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYT 521

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++     + +V  AL LF KM       +S ++++ I    ++  I EA     K+++ 
Sbjct: 522 AIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQ 581

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE- 535
             +P+V  Y     GLC+ G    A  +  + +      P  + Y+  I  +C+ G AE 
Sbjct: 582 GLLPNVITYTSFIDGLCRNGRTGLAFKIFHE-MEKRNYFPNLYTYSSLIYGLCQEGRAED 640

Query: 536 -KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
            ++  +L  +T  GC PN    + ++ G+C  G   EA ++  +++++ L  + +  +Y 
Sbjct: 641 AEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGL--QPSEEIYR 698

Query: 595 EILI---EHMKKKTADLVLSGLKFFGLE---SKLKAKGCKL 629
            +LI   +++K ++A  +   +   G +   S  KA  C L
Sbjct: 699 ALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICAL 739



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/471 (21%), Positives = 200/471 (42%), Gaps = 49/471 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G  +E +E+L KM++  C P++  +TA+I  L+ +   +  + ++ +M  D +    + Y
Sbjct: 321 GCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTY 380

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI  LC  GR      +F+ M  +G L     Y  +I+     G + KA  +   ++ 
Sbjct: 381 NALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLK 440

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G   ++  YN++I G C+    + A +L E+   + L PD  T   L+   +  G++++
Sbjct: 441 AGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEH 500

Query: 362 FFKLLAQMEKLKFS-----VAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIY 415
              L   M +   S       A ++ +F        ++  AL +F ++   G   S   Y
Sbjct: 501 ATSLFYGMMEHGISPNHVTYTAIIDGYFNL-----AKVDDALALFWKMVESGNLPSSQTY 555

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N+++    +   + +A    GKM    L  N ++++  I     +G    A +  +++ +
Sbjct: 556 NVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEK 615

Query: 476 MSQVPSVAAYNCLTKGLCKIGEI-DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
            +  P++  Y+ L  GLC+ G   DA M  +   L +    P    Y   +  +C  G  
Sbjct: 616 RNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRC 675

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISG-------------------------------- 562
            +  +++  M ++G  P+E I  A++ G                                
Sbjct: 676 YEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKAL 735

Query: 563 ---MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVL 610
              +CK   +EEA+ +F  + E+     ++ +V+  +L   +K+   DL L
Sbjct: 736 ICALCKENFIEEAQCIFQTMLEKHW--NSDEVVWTVLLDGLLKEGETDLCL 784



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 161/415 (38%), Gaps = 41/415 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I + + I +KM +    P+V  Y  +I     + NL+  +R+ E MK + ++ D   Y
Sbjct: 426 GDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTY 485

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G  +GG++     LF  M E+GI  +   Y  +I+G     KV  A  L   +V+
Sbjct: 486 TELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVE 545

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           SG       YN +I G  +     +A       V+  L P+  T    +      GR   
Sbjct: 546 SGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGL 605

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
            FK+  +MEK  +                                  + ++  Y+ L+  
Sbjct: 606 AFKIFHEMEKRNY----------------------------------FPNLYTYSSLIYG 631

Query: 422 LLEIGEVKKA-LY-LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
           L + G  + A +Y L  ++     E N  +++  ++     G   EA +    + +    
Sbjct: 632 LCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQ 691

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLV--RDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
           PS   Y  L  G CK  ++++A+ +    D LG          Y   I  +C+    E+ 
Sbjct: 692 PSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLS---DYKALICALCKENFIEEA 748

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
             +   M ++    +EV+ + ++ G+ K G  +   K+   +  R       T V
Sbjct: 749 QCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYV 803



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 15/212 (7%)

Query: 134 LASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEK 193
           LA K FH   K + Y  N  +Y++L Y L +    RA D            AEM  +L +
Sbjct: 605 LAFKIFHEMEK-RNYFPNLYTYSSLIYGLCQEG--RAED------------AEMYNLLAR 649

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           +    C+P+V  YT +++ L  E       ++   M+K  ++     Y  L++G CK  +
Sbjct: 650 LTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLK 709

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           V     +F  M   G  +  + Y  LI  L  E  + +A  + + +++  + +D  ++  
Sbjct: 710 VESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTV 769

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           ++ GL +  + D   KL  V    +   +F T
Sbjct: 770 LLDGLLKEGETDLCLKLLHVMESRNCTLNFQT 801


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 191/427 (44%), Gaps = 49/427 (11%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           + GR AE   +L       C+PDV +Y AM+        LD   R+   M    +E D  
Sbjct: 102 ASGRTAEARRVLAS-----CEPDVMSYNAMVAGYCVTGQLDNARRLVAAMP---MEPDTY 153

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TLI GLC  GR      +  +M   G + D   Y +L+E         +A  LL ++
Sbjct: 154 TYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEM 213

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMG 357
            D G   D+  YN ++ G+C+  + D A +  +        P+  + N +L  +C AE  
Sbjct: 214 RDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAE-- 271

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNI 417
           R ++  KL+A+M +                                 KG+   +V  +N+
Sbjct: 272 RWEDAEKLMAEMSR---------------------------------KGRP-PNVVTFNM 297

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L   G V+ A+ +  ++       NSLS++  +    +   +  A      ++   
Sbjct: 298 LISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSG 357

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P + +YN L   LC+ GE+DAA+ L+   L +    P    Y   I  + ++G+ E+ 
Sbjct: 358 CYPDIVSYNTLLTALCRGGEVDAAVELLHQ-LKDKGCTPVLISYNTVIDGLTKAGKTEEA 416

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +E+LNEM  +G  P+ +  S I SG+C+ G +EEA K F  +++  +    NT++Y+ IL
Sbjct: 417 LELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGI--RPNTVLYNAIL 474

Query: 598 IEHMKKK 604
           +   K++
Sbjct: 475 LGLCKRR 481



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 177/389 (45%), Gaps = 2/389 (0%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PD + Y  +IR L      D  L V ++M +     DV+ Y  L+   CK     +  +
Sbjct: 149 EPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVK 208

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L  EM++ G   D   Y V++ G+  EG+V  A + LK L   G   +   YN ++ GLC
Sbjct: 209 LLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLC 268

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
             ++++ A KL     +    P+  T N L+      G ++   ++L Q+ K   +  + 
Sbjct: 269 TAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSL 328

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM 438
                     K++++  A+   E +   G Y  +  YN L+ AL   GEV  A+ L  ++
Sbjct: 329 SYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQL 388

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
           +        +S++  I    ++G   EA E  N+++     P +  Y+ ++ GLC+ G I
Sbjct: 389 KDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRI 448

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           + A+      + ++   P    Y   +L +C+       I++   M   GC PNE   + 
Sbjct: 449 EEAIKAFCK-VQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTI 507

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTE 587
           +I G+   G ++EAR++   L  R ++++
Sbjct: 508 LIEGLAYEGLVKEAREMMAELCSRGVVSK 536



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 18/208 (8%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           +KG   N  ++N L   L R  L   A                +EIL+++ +  C P+  
Sbjct: 285 RKGRPPNVVTFNMLISFLCRRGLVEPA----------------MEILDQIPKYGCTPNSL 328

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
           +Y  ++     ++ +D  +   E M       D+++Y TL+  LC+GG V    EL  ++
Sbjct: 329 SYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQL 388

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K+ G       Y  +I+GL   GK  +A +LL ++V  G + D+  Y++I  GLCR  + 
Sbjct: 389 KDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRI 448

Query: 325 DKAYKLFEVTVQD-DLAPDFSTVNPLLV 351
           ++A K F   VQD  + P+    N +L+
Sbjct: 449 EEAIKAF-CKVQDMGIRPNTVLYNAILL 475



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 10/161 (6%)

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L+  G++++A+ L   M GL         ++ I+    SG   EA     + +  S  P 
Sbjct: 66  LVRRGDLEEAIRLVESMAGLEPSAAGPCAAL-IKKLCASGRTAEA-----RRVLASCEPD 119

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V +YN +  G C  G++D A  LV      +   P  + Y   I  +C  G  +  + VL
Sbjct: 120 VMSYNAMVAGYCVTGQLDNARRLV----AAMPMEPDTYTYNTLIRGLCGRGRTDNALAVL 175

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           ++M + GC P+ V  + ++   CK    ++A K+   +R++
Sbjct: 176 DDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDK 216


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 202/408 (49%), Gaps = 16/408 (3%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+     +L K+ +   +P++  +  +IR L  E  +   L ++++M  +  + +V+ Y 
Sbjct: 109 RLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYG 168

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TLI GLCK G       L R M++     D  +Y  +I+ L  + +V +A +L  +++  
Sbjct: 169 TLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQ 228

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD---FSTVNPLLVCCAEMGRM 359
           G    +  YNS+I  LC + ++     L    V   + P+   FSTV   L  C E G++
Sbjct: 229 GISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDAL--CKE-GKV 285

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYN 416
                ++  M  +K  V  ++  +   + G   R  M  A+ VF+ +  KG++  V  Y+
Sbjct: 286 MEAHDVVDMM--IKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYS 343

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKII 474
            L+    +I  ++KA+YLF +M    L  N++++S  +   CHV  G + +A    ++++
Sbjct: 344 TLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHV--GRLQDAIALFHEMV 401

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
              Q+P   +Y  L   LCK   +D A+ L++   G+    P    Y + I  +CR+GE 
Sbjct: 402 TRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGS-NMDPDIQIYTIVIDGMCRAGEL 460

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           E   ++ + ++ +G  PN    + +I+G+C+ G L EA K+F  ++ +
Sbjct: 461 EAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRK 508



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 161/368 (43%), Gaps = 6/368 (1%)

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
            LD  L  +  M        +  +  L++ + K         L  +M   GI  +     
Sbjct: 39  TLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLN 98

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           +LI       ++G A  +L  ++  G++ ++  +N++I GLC   +  +   LF+  + +
Sbjct: 99  ILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGE 158

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIM 395
              P+  T   L+    ++G      +LL  ME  + +   D+  +   +  + K+ ++ 
Sbjct: 159 GFQPNVVTYGTLINGLCKVGSTSAAIRLLRSME--QGNCQPDVVVYTSIIDSLCKDRQVT 216

Query: 396 MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
            A ++F E+  +G S S+  YN L+ AL  + E K    L  +M    +  N + FS  +
Sbjct: 217 QAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVV 276

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
               + G ++EA +  + +I+    P+V  YN L  G C   E+D A+  V D +     
Sbjct: 277 DALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVK-VFDTMVCKGF 335

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P    Y+  I   C+    EK + +  EM ++   PN V  S ++ G+C  G L++A  
Sbjct: 336 APDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIA 395

Query: 575 VFTNLRER 582
           +F  +  R
Sbjct: 396 LFHEMVTR 403



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 118/270 (43%), Gaps = 22/270 (8%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCK---P 201
           ++G + N  +YNAL                   MD     +EM E ++     +CK   P
Sbjct: 297 KRGVEPNVVTYNAL-------------------MDGHCLRSEMDEAVKVFDTMVCKGFAP 337

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           DV +Y+ +I      + ++  + ++EEM +  +  + + Y TL+ GLC  GR+     LF
Sbjct: 338 DVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALF 397

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            EM   G + D   Y +L++ L    ++ +A  LLK +  S    D+ IY  +I G+CR 
Sbjct: 398 HEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRA 457

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            + + A  LF       L P+  T   ++    + G +    KL  +M++  +S      
Sbjct: 458 GELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTY 517

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSS 411
                   +    +  + + +E+  +G+S+
Sbjct: 518 NLITRGFLRNNETLRGIQLLQEMLARGFSA 547



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 152/349 (43%), Gaps = 8/349 (2%)

Query: 106 QVVTELSKLRRVTP--DLVAEVLKVENNPTLAS--KFFHWAGKQKGYKHNFASYNALAYC 161
            ++  L K R+VT   +L +E++    +P++ +     H       +KH  A  N +   
Sbjct: 204 SIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNS 263

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221
               N+   +  V  L   +G++ E  ++++ M +   +P+V  Y A++        +D 
Sbjct: 264 KIMPNVVIFSTVVDALC-KEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDE 322

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
            ++V++ M       DV++Y TLI G CK  R+ +   LF EM    ++ +   Y  L+ 
Sbjct: 323 AVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMH 382

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
           GL   G++  A  L  ++V  G   D   Y  ++  LC+ ++ D+A  L +     ++ P
Sbjct: 383 GLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDP 442

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVF 401
           D      ++      G ++    L + +                  + ++  +  A  +F
Sbjct: 443 DIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLF 502

Query: 402 EELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNS 447
            E+K KGYS +   YN++    L   E  + + L  +M  RG + +V++
Sbjct: 503 GEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVST 551



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 77/169 (45%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + + +  +M      PD  +Y  ++  L   R LD  + + + ++   ++ D+  Y
Sbjct: 388 GRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIY 447

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I G+C+ G +    +LF  +   G+  +   Y ++I GL  +G + +A  L  ++  
Sbjct: 448 TIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKR 507

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            GY  +   YN I  G  R  +  +  +L +  +    + D ST   L+
Sbjct: 508 KGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLV 556


>gi|359476071|ref|XP_003631786.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 629

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 195/446 (43%), Gaps = 29/446 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAA-------------------DQVPELMDSQGRI 184
           K+ G  HN ASY AL Y  S+  L+  A                     + + +  +GRI
Sbjct: 142 KKMGAVHNAASYTALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLCDEGRI 201

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            + L+IL KM +  C PD+  Y  ++R L  +        + + + +  +  D   Y  L
Sbjct: 202 GDALDILGKMGKEGCDPDIVTYNVILRELFHQDRYVEIGELLQVIDQKEISPDSFTYAAL 261

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
             GL K  +V   ++L   +   G  +D A+Y +    L  E K G+A  LL+ +V+ G 
Sbjct: 262 TGGLLKRDQVRVANKLLLYVISAGCTVDVAVYNIYFHCLCRENKSGEALSLLQSMVEKGL 321

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
                 YN+I+ G CR    D+A +LF+     + +PD  + N +L    + G      +
Sbjct: 322 VPTNVSYNTILNGFCRENHIDEALQLFDHFEWANNSPDVVSFNTILSAACKQGNSSMIRR 381

Query: 365 LLAQME----KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
           +L +ME    KL    +  L ++F   +GK   I   L++ E +   G + +V  +N+L+
Sbjct: 382 VLYRMEYEGVKLNVVSSTCLIQYF-CAIGK---ISECLELLESMIRNGLNPTVVTFNMLL 437

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L + G +  A  +F + R      N+ S++I I   +  G+     +    +      
Sbjct: 438 DKLCKNGLLGTAHRIFREFRNTGYFPNTTSYNILIHASIREGNDSLVEQLLRDMYSWRLK 497

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P    Y    KGLCK G+I  A+ L RD +      PT   Y   +  + + G+   I+ 
Sbjct: 498 PDAVTYGSFIKGLCKEGKISVAIQL-RDQMLESGLTPTITIYNTILAAMFQRGKFWDIVS 556

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCK 565
           +L +MT +GC PN V    +   M K
Sbjct: 557 LLKDMTMDGCEPNAVSIEILKQAMSK 582



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 181/435 (41%), Gaps = 15/435 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+    L +L  +++     +  +YTA++   + E   +    + +EMK D  + +V+ Y
Sbjct: 129 GQSYTALALLYSLKKMGAVHNAASYTALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITY 188

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++  LC  GR+    ++  +M + G   D   Y V++  L  + +  +  +LL+ +  
Sbjct: 189 TVIVKFLCDEGRIGDALDILGKMGKEGCDPDIVTYNVILRELFHQDRYVEIGELLQVIDQ 248

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                D   Y ++ GGL +  Q   A KL    +      D +  N    C     +   
Sbjct: 249 KEISPDSFTYAALTGGLLKRDQVRVANKLLLYVISAGCTVDVAVYNIYFHCLCRENKSGE 308

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
              LL  M + K  V  ++  +   L G  +E  I  AL +F+  +    S  V  +N +
Sbjct: 309 ALSLLQSMVE-KGLVPTNV-SYNTILNGFCRENHIDEALQLFDHFEWANNSPDVVSFNTI 366

Query: 419 MGALLEIGE---VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           + A  + G    +++ LY   +M    +++N +S +  IQ     G I E  E    +I 
Sbjct: 367 LSAACKQGNSSMIRRVLY---RMEYEGVKLNVVSSTCLIQYFCAIGKISECLELLESMIR 423

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P+V  +N L   LCK G +  A  + R+   N    P    Y + I    R G   
Sbjct: 424 NGLNPTVVTFNMLLDKLCKNGLLGTAHRIFRE-FRNTGYFPNTTSYNILIHASIREGNDS 482

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
            + ++L +M      P+ V   + I G+CK G +  A ++   + E  L       +Y+ 
Sbjct: 483 LVEQLLRDMYSWRLKPDAVTYGSFIKGLCKEGKISVAIQLRDQMLESGL--TPTITIYNT 540

Query: 596 ILIEHMKK-KTADLV 609
           IL    ++ K  D+V
Sbjct: 541 ILAAMFQRGKFWDIV 555



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/413 (21%), Positives = 163/413 (39%), Gaps = 22/413 (5%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA---CLRVWEEMKKDLV 234
           M S G +       E+M R+   P   ++T+++++L     L +    + V+E M +   
Sbjct: 20  MTSTGNLRAAFFFAEEMWRSGFLP---SFTSLLKILKKWLGLGSLVDSMSVFEFMLRLEY 76

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
                    LI  L K G     H +FR +   G L     Y  ++  L   G+   A  
Sbjct: 77  FPTEPTLNLLISMLSKAGMAREAHFVFRVLLGKGCLKCAHSYNPILWALCKCGQSYTALA 136

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           LL  L   G   +   Y +++ G  +   +++A+ + +    D   P+  T   ++    
Sbjct: 137 LLYSLKKMGAVHNAASYTALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLC 196

Query: 355 EMGRMDNFFKLLAQMEK-------LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK 407
           + GR+ +   +L +M K       + ++V   L + F      ++R +   ++ + +  K
Sbjct: 197 DEGRIGDALDILGKMGKEGCDPDIVTYNVI--LRELFH-----QDRYVEIGELLQVIDQK 249

Query: 408 GYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
             S     Y  L G LL+  +V+ A  L   +      V+   ++I   C        EA
Sbjct: 250 EISPDSFTYAALTGGLLKRDQVRVANKLLLYVISAGCTVDVAVYNIYFHCLCRENKSGEA 309

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
                 ++E   VP+  +YN +  G C+   ID A+ L  D      + P    +   + 
Sbjct: 310 LSLLQSMVEKGLVPTNVSYNTILNGFCRENHIDEALQLF-DHFEWANNSPDVVSFNTILS 368

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             C+ G +  I  VL  M  EG   N V  + +I   C  G + E  ++  ++
Sbjct: 369 AACKQGNSSMIRRVLYRMEYEGVKLNVVSSTCLIQYFCAIGKISECLELLESM 421


>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1147

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 128/527 (24%), Positives = 233/527 (44%), Gaps = 45/527 (8%)

Query: 113 KLRRVTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA 171
           +L    PDL+  VL  +   P +A +FF+W  +Q   K +  ++ A+   L+ N+L   A
Sbjct: 115 RLLLTDPDLLIRVLNMIRVKPEIAFRFFNWIQRQSDVKQSRQAFAAMLEILAENDLMSEA 174

Query: 172 DQVPE-------------LMD-------------------SQGRIAEM-LEILEKMRRNL 198
             V E             L+D                   ++  +AE  L   EKM R  
Sbjct: 175 YLVAERSINLGMHEIDDLLIDGNFDKLVALKLLDLLLWVYTKKSMAEKCLLSFEKMIRKG 234

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
             P V     ++RVL   R ++    V+E M    +   V+ + T++    K G + R  
Sbjct: 235 FLPSVRNCNIVLRVLRDSRMMNKAQEVYETMVMHGIMPTVITFNTMLDSCFKAGDLERVD 294

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           +++ EMK   I      Y +LI G    GK+ +A     D+  SG+      +N +I G 
Sbjct: 295 KIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEARRFHGDMQRSGFPVTPYSFNPLIEGY 354

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C+   FD+A+ + +  +   + P  ST N  +    E GR+D+  +LL+ M       A 
Sbjct: 355 CKQGLFDEAWGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDARELLSSM------AAP 408

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELK-GKGYSSVPIYNILMGALLEIGEVKKALYLF 435
           D+  +   + G  K  + + A  +F++LK G    S+  YN L+  L E G ++ A  L 
Sbjct: 409 DVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLK 468

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M    +  + ++++  ++  V++G++  A E +++++     P   AY   T G  ++
Sbjct: 469 EEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELRL 528

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G+ + A  L  + +      P    Y + I  +C+ G  EK IE   ++ + G  P+ V 
Sbjct: 529 GDSEKAFRLHEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVT 588

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
            + +I G  + G  + AR ++  +  ++L    + I Y  ++  H K
Sbjct: 589 YTTVIRGYLEKGRFKMARDLYDEMLSKRL--SPSVITYFVLIHGHAK 633



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 164/386 (42%), Gaps = 42/386 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI +  E+L  M      PDV +Y  ++      R       +++++K   +   ++ Y
Sbjct: 393 GRIDDARELLSSM----AAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTY 448

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI GLC+ G +     L  EM    I  D   Y  L++G V  G +  A ++  +++ 
Sbjct: 449 NTLIDGLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLR 508

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV-QDDLAPDFSTVNPLLVCCAEMGRMD 360
            G + D   Y +   G  R+   +KA++L E  V +D  APD +  N          R+D
Sbjct: 509 KGIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDHHAPDLTIYNV---------RID 559

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
              K+             +LEK  EF    + +I     V + +          Y  ++ 
Sbjct: 560 GLCKV------------GNLEKAIEF----QRKIFRVGLVPDHV---------TYTTVIR 594

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
             LE G  K A  L+ +M    L  + +++ + I  H ++G + +A +   ++ +    P
Sbjct: 595 GYLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRGVRP 654

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           +V  +N L  G+CK G ID A   +  C +      P ++ Y + I   C   + E++++
Sbjct: 655 NVMTHNALLHGMCKAGNIDEAYRYL--CKMEEEGISPNKYSYTILISKHCDLDKWEEVVK 712

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCK 565
           +  EM  +   P+     A+   + K
Sbjct: 713 LYKEMLDKEIEPDGYTHRALFKHLEK 738



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/492 (19%), Positives = 203/492 (41%), Gaps = 76/492 (15%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           E+ E M  +   P V  +  M+       +L+   ++W EMK+  +E   + Y  LI G 
Sbjct: 260 EVYETMVMHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGF 319

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY---- 304
            K G++        +M+ +G  +    +  LIEG   +G   +A  +  +++++G     
Sbjct: 320 SKSGKMEEARRFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGIYPTT 379

Query: 305 -------RA--------------------DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
                  RA                    D+  YN+++ G  ++++F +A  LF+     
Sbjct: 380 STYNIYIRALCEFGRIDDARELLSSMAAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAG 439

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIM 395
           ++ P   T N L+    E G ++   +L  +M      +  D+  +   L G  K   + 
Sbjct: 440 NINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQL--IYPDVITYTTLLKGFVKNGNLS 497

Query: 396 MALDVFEELKGKG-------YSS------------------------------VPIYNIL 418
           MA ++++E+  KG       Y++                              + IYN+ 
Sbjct: 498 MATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDHHAPDLTIYNVR 557

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L ++G ++KA+    K+  + L  + ++++  I+ ++E G    A + +++++    
Sbjct: 558 IDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYLEKGRFKMARDLYDEMLSKRL 617

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            PSV  Y  L  G  K G ++ A     + +      P    +   +  +C++G  ++  
Sbjct: 618 SPSVITYFVLIHGHAKAGRLEQAFQYSTE-MKKRGVRPNVMTHNALLHGMCKAGNIDEAY 676

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
             L +M +EG  PN+   + +IS  C     EE  K++  + ++++  +  T      L 
Sbjct: 677 RYLCKMEEEGISPNKYSYTILISKHCDLDKWEEVVKLYKEMLDKEIEPDGYT---HRALF 733

Query: 599 EHMKKKTADLVL 610
           +H++K    + L
Sbjct: 734 KHLEKDHESMAL 745



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR     ++ ++M      P V  Y  +I   A    L+   +   EMKK  V  +VM 
Sbjct: 599 KGRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRGVRPNVMT 658

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  L+ G+CK G +   +    +M+E GI  ++  Y +LI       K  +   L K+++
Sbjct: 659 HNALLHGMCKAGNIDEAYRYLCKMEEEGISPNKYSYTILISKHCDLDKWEEVVKLYKEML 718

Query: 301 D 301
           D
Sbjct: 719 D 719


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 202/408 (49%), Gaps = 16/408 (3%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+     +L K+ +   +P++  +  +IR L  E  +   L ++++M  +  + +V+ Y 
Sbjct: 118 RLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYG 177

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TLI GLCK G       L R M++     D  +Y  +I+ L  + +V +A +L  +++  
Sbjct: 178 TLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQ 237

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD---FSTVNPLLVCCAEMGRM 359
           G    +  YNS+I  LC + ++     L    V   + P+   FSTV   L  C E G++
Sbjct: 238 GISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDAL--CKE-GKV 294

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYN 416
                ++  M  +K  V  ++  +   + G   R  M  A+ VF+ +  KG++  V  Y+
Sbjct: 295 MEAHDVVDMM--IKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYS 352

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKII 474
            L+    +I  ++KA+YLF +M    L  N++++S  +   CHV  G + +A    ++++
Sbjct: 353 TLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHV--GRLQDAIALFHEMV 410

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
              Q+P   +Y  L   LCK   +D A+ L++   G+    P    Y + I  +CR+GE 
Sbjct: 411 TRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGS-NMDPDIQIYTIVIDGMCRAGEL 469

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           E   ++ + ++ +G  PN    + +I+G+C+ G L EA K+F  ++ +
Sbjct: 470 EAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRK 517



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 161/368 (43%), Gaps = 6/368 (1%)

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
            LD  L  +  M        +  +  L++ + K         L  +M   GI  +     
Sbjct: 48  TLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLN 107

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           +LI       ++G A  +L  ++  G++ ++  +N++I GLC   +  +   LF+  + +
Sbjct: 108 ILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGE 167

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIM 395
              P+  T   L+    ++G      +LL  ME  + +   D+  +   +  + K+ ++ 
Sbjct: 168 GFQPNVVTYGTLINGLCKVGSTSAAIRLLRSME--QGNCQPDVVVYTSIIDSLCKDRQVT 225

Query: 396 MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
            A ++F E+  +G S S+  YN L+ AL  + E K    L  +M    +  N + FS  +
Sbjct: 226 QAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVV 285

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
               + G ++EA +  + +I+    P+V  YN L  G C   E+D A+  V D +     
Sbjct: 286 DALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVK-VFDTMVCKGF 344

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P    Y+  I   C+    EK + +  EM ++   PN V  S ++ G+C  G L++A  
Sbjct: 345 APDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIA 404

Query: 575 VFTNLRER 582
           +F  +  R
Sbjct: 405 LFHEMVTR 412



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 118/270 (43%), Gaps = 22/270 (8%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCK---P 201
           ++G + N  +YNAL                   MD     +EM E ++     +CK   P
Sbjct: 306 KRGVEPNVVTYNAL-------------------MDGHCLRSEMDEAVKVFDTMVCKGFAP 346

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           DV +Y+ +I      + ++  + ++EEM +  +  + + Y TL+ GLC  GR+     LF
Sbjct: 347 DVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALF 406

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            EM   G + D   Y +L++ L    ++ +A  LLK +  S    D+ IY  +I G+CR 
Sbjct: 407 HEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRA 466

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            + + A  LF       L P+  T   ++    + G +    KL  +M++  +S      
Sbjct: 467 GELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTY 526

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSS 411
                   +    +  + + +E+  +G+S+
Sbjct: 527 NLITRGFLRNNETLRGIQLLQEMLARGFSA 556



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 152/349 (43%), Gaps = 8/349 (2%)

Query: 106 QVVTELSKLRRVTP--DLVAEVLKVENNPTLAS--KFFHWAGKQKGYKHNFASYNALAYC 161
            ++  L K R+VT   +L +E++    +P++ +     H       +KH  A  N +   
Sbjct: 213 SIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNS 272

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221
               N+   +  V  L   +G++ E  ++++ M +   +P+V  Y A++        +D 
Sbjct: 273 KIMPNVVIFSTVVDALC-KEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDE 331

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
            ++V++ M       DV++Y TLI G CK  R+ +   LF EM    ++ +   Y  L+ 
Sbjct: 332 AVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMH 391

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
           GL   G++  A  L  ++V  G   D   Y  ++  LC+ ++ D+A  L +     ++ P
Sbjct: 392 GLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDP 451

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVF 401
           D      ++      G ++    L + +                  + ++  +  A  +F
Sbjct: 452 DIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLF 511

Query: 402 EELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNS 447
            E+K KGYS +   YN++    L   E  + + L  +M  RG + +V++
Sbjct: 512 GEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVST 560



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 77/169 (45%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + + +  +M      PD  +Y  ++  L   R LD  + + + ++   ++ D+  Y
Sbjct: 397 GRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIY 456

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I G+C+ G +    +LF  +   G+  +   Y ++I GL  +G + +A  L  ++  
Sbjct: 457 TIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKR 516

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            GY  +   YN I  G  R  +  +  +L +  +    + D ST   L+
Sbjct: 517 KGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLV 565


>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
          Length = 642

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/495 (24%), Positives = 224/495 (45%), Gaps = 30/495 (6%)

Query: 114 LRRVTPDLVAEVLK---VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNN---- 166
           L +++P+ V+ VLK   +   P +A  FF W+ KQK Y HN   Y +L   L+       
Sbjct: 93  LIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVDVLALAKDVDR 152

Query: 167 ---------------LFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIR 211
                             AA+ + +     G + E+L +  KM+ N  +P ++ Y  ++ 
Sbjct: 153 IRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMN 212

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
            L +   +D+  RV+E M+   ++ D++ Y T+I G CK G+  +  E  R+M+  G   
Sbjct: 213 GLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEA 272

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           D+  Y  +I+    +   G    L +++ + G +     ++ +IGGLC+  + ++ Y +F
Sbjct: 273 DKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVF 332

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG-- 389
           E  ++    P+ +    L+   A+ G +++  +LL +M    F    D+  +   + G  
Sbjct: 333 ENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLC 390

Query: 390 KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           K  R+  ALD F   +  G + +   Y+ L+  L + G V +A  LF +M       +S 
Sbjct: 391 KNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSY 450

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVP-SVAAYNCLTKGLCKIGEIDAAMMLVRD 507
            ++  I    +   + EA     ++ E      +V  Y  L  G+ K    + A+ L  D
Sbjct: 451 CYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKL-WD 509

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            + +    PT   +      +C SG+  +  ++L+E+   G   +   C  +I+ +CK G
Sbjct: 510 MMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGVILDAA-CEDMINTLCKAG 568

Query: 568 TLEEARKVFTNLRER 582
            ++EA K+   + ER
Sbjct: 569 RIKEACKLADGITER 583


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/500 (22%), Positives = 216/500 (43%), Gaps = 62/500 (12%)

Query: 114 LRRVTPDLVAEVLK---VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRA 170
           L +++P+ V+ VLK   +   P +A  FF W+ KQK Y HN   Y +L   L+   L + 
Sbjct: 111 LIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVDVLA---LAKD 167

Query: 171 ADQV-------------------PELMDSQGRIA---EMLEILEKMRRNLCKPDVFAYTA 208
            D++                     L+ S G++    E+L +  KM+ N  +P ++ Y  
Sbjct: 168 VDRIRFICSEIRKFEFPMTVSPGNSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNF 227

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           ++  L +   +D+  RV+E M+   ++ DV+ Y T+I G CK G+  +  E  R M+  G
Sbjct: 228 LMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKG 287

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
           +  D+  Y  +I+    +        L +++ + G +     ++ +IGGLC+  + ++ Y
Sbjct: 288 LEADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGY 347

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
            +FE  ++    P+ +    L+   A+ G +++  +LL +M    F+             
Sbjct: 348 AVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFN------------- 394

Query: 389 GKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
                                  V  Y++++  L + G V++A+  F   R   L +NS+
Sbjct: 395 ---------------------PDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSM 433

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
            +S  I    ++G + EA     ++ E         YN L     K G++D A+ L +  
Sbjct: 434 FYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRM 493

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
                   T + Y + I  + +    E+ +++ + M  +G  P      A+ +G+C  G 
Sbjct: 494 EEEEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGLCLSGK 553

Query: 569 LEEARKVFTNLRERKLLTEA 588
           +  A K+   L    ++ +A
Sbjct: 554 VARACKILDELAPMGVILDA 573



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 114/485 (23%), Positives = 198/485 (40%), Gaps = 85/485 (17%)

Query: 90  RFITDAFRKNQFQW----GPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAG-K 144
           RFI    RK +F      G  ++    KL      +V E+L V            W   K
Sbjct: 172 RFICSEIRKFEFPMTVSPGNSLIKSFGKL-----GMVEELLWV------------WRKMK 214

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS-------------------QGRIA 185
           + G +    +YN L   L       +A++V E+M+S                    G+  
Sbjct: 215 ENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQ 274

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + LE L  M     + D   Y  MI+   A+ +  +C+ +++EM +  ++    A+  +I
Sbjct: 275 KALEKLRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVI 334

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLCK G++  G+ +F  M   G   + AIY VLI+G    G V  A  LL  ++D G+ 
Sbjct: 335 GGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFN 394

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  Y+ ++ GLC+  + ++A   F+    + LA +    + L+    + GR+D   +L
Sbjct: 395 PDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERL 454

Query: 366 LAQME-----KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
             +M      +  +   A ++ F +   GK +  +      EE +G    +V  Y IL+ 
Sbjct: 455 FEEMSEKGCTRDSYCYNALIDAFTKH--GKVDEALALFKRMEEEEGCD-QTVYTYTILIS 511

Query: 421 ALLEIGEVKKALYLFGKM------------RGLNLEVNSLSFSIAIQCHV---------- 458
            + +    ++AL L+  M            R L+  +  LS  +A  C +          
Sbjct: 512 GMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGL-CLSGKVARACKILDELAPMGVI 570

Query: 459 -------------ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
                        ++G I EAC+  + I E  +         +   L K+G+ D AM L+
Sbjct: 571 LDAACEDMINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKADLAMKLM 630

Query: 506 RDCLG 510
              +G
Sbjct: 631 HSKIG 635


>gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 544

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 120/475 (25%), Positives = 205/475 (43%), Gaps = 30/475 (6%)

Query: 116 RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVP 175
            +TP  V EV+K  NNP L  KFF +  ++    H+F +YN L   L +  L  +A  + 
Sbjct: 72  HLTPSHVLEVVKRFNNPNLGFKFFRFTRERLSMSHSFWTYNMLLRSLCQAGLHNSAKLLY 131

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           + M S G++                PD      ++   A     D    +  E +   V+
Sbjct: 132 DSMRSDGQL----------------PDSRLLGFLVSSFALADRFDVSKELLAEAQCSGVQ 175

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            DV+ Y   +  L K  R+     LFRE+  +   +D   + +LI GL   G V +A +L
Sbjct: 176 VDVIVYNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDVDEAFEL 235

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCA 354
           L D+   G   D+  YN ++ GLCR+ Q D+A  L  EV ++ + AP+  +   ++    
Sbjct: 236 LGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTTVISGYC 295

Query: 355 EMGRMDNFFKLLAQMEKLK-----FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY 409
            + +MD    L  +M +       F+ +A ++ F      K   +  AL + +++   G 
Sbjct: 296 RLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFV-----KAGDMASALGMHKKILFHGC 350

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           + +V     L+      G V   L L+ +M   N+  N  ++S+ I    +S  + EA  
Sbjct: 351 APNVITLTSLINGYCRAGWVNHGLDLWREMNARNIPANLYTYSVLISALCKSNRLQEARN 410

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
               + +   VP    YN +  G CK G ID A  +V +        P +  + + I+  
Sbjct: 411 LLRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEM--EEKCKPDKLTFTILIIGH 468

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
           C  G   + I +  +M   GC P+++    + S + K G   EA ++   L E +
Sbjct: 469 CMKGRTPEAIGIFYKMLASGCTPDDITIRTLSSCLLKSGMPGEAARIKETLFENQ 523



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 151/372 (40%), Gaps = 44/372 (11%)

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  L+  LC+ G       L+  M+ +G L D  + G L+       +   + +LL + 
Sbjct: 110 TYNMLLRSLCQAGLHNSAKLLYDSMRSDGQLPDSRLLGFLVSSFALADRFDVSKELLAEA 169

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
             SG + D+ +YN+ +  L +  + D A  LF   ++     D  T N L+      G +
Sbjct: 170 QCSGVQVDVIVYNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDV 229

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE--LKGKGYSSVPIY 415
           D  F+LL  M    F  + D+  +   L G  + +++  A D+ EE  LK +   +V  Y
Sbjct: 230 DEAFELLGDMGS--FGCSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSY 287

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             ++     + ++ +A  LF +M     + N  +FS  +   V++GD+  A   H KI+ 
Sbjct: 288 TTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKILF 347

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P+V     L  G C+ G ++  +                                 
Sbjct: 348 HGCAPNVITLTSLINGYCRAGWVNHGL--------------------------------- 374

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
              ++  EM     P N    S +IS +CK   L+EAR +   L++  ++  A   VY+ 
Sbjct: 375 ---DLWREMNARNIPANLYTYSVLISALCKSNRLQEARNLLRILKQSDIVPLA--FVYNP 429

Query: 596 ILIEHMKKKTAD 607
           ++  + K    D
Sbjct: 430 VIDGYCKSGNID 441


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 207/451 (45%), Gaps = 28/451 (6%)

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
           +L + +KM     KP++     +I        +     V+ ++ K     D + + TLI 
Sbjct: 104 VLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIK 163

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC  G++ +      ++   G   D+  YG LI GL   G+   A DLL+ +  +  + 
Sbjct: 164 GLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQP 223

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           ++ +YN+II  +C+VK  ++A+ LF   +   ++PD  T + L+     +G++++   L 
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLF 283

Query: 367 AQM--EKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
            +M  E +K  V       F  LV    K+ ++     VF+ +  +G   +   YN LM 
Sbjct: 284 NKMILENIKPDVYT-----FNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMD 338

Query: 421 ALLEIGEVKKALYLFGKMR--GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
               + EV KA  +F  M   G+N ++ S S  I   C ++  D  EA     ++   + 
Sbjct: 339 GYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFD--EAMNLFKEMHRKNI 396

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           +P V  Y+ L  GL K G I  A+ LV D + +    PT   Y   +  +C+  + +K I
Sbjct: 397 IPDVVTYSSLIDGLSKSGRISYALQLV-DQMHDRGVPPTIRTYNSILDALCKIHQVDKAI 455

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL--RERKLLTEANTIVYDEI 596
            +L ++  +G  PN    S +I G+C+ G LE+ARKVF  L  +   L  +  TI+    
Sbjct: 456 ALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGF 515

Query: 597 LIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
            +E +  +             L SK++  GC
Sbjct: 516 CVEGLFNEA----------LALLSKMEDNGC 536



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/419 (22%), Positives = 190/419 (45%), Gaps = 22/419 (5%)

Query: 139 FHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNL 198
           FH      G+  +  SY  L + L +    RAA                L++L+++  NL
Sbjct: 177 FHDKVVALGFHFDQISYGTLIHGLCKVGETRAA----------------LDLLQRVDGNL 220

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
            +P+V  Y  +I  +   + ++    ++ EM    +  DV+ Y  LI G C  G++    
Sbjct: 221 VQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAI 280

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           +LF +M    I  D   + +L+     +GK+ +   +   ++  G + +   YNS++ G 
Sbjct: 281 DLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGY 340

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C VK+ +KA  +F    Q  + PD  + + ++    ++ + D    L  +M +   ++  
Sbjct: 341 CLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRK--NIIP 398

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLF 435
           D+  +   + G  K  RI  AL + +++  +G   ++  YN ++ AL +I +V KA+ L 
Sbjct: 399 DVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALL 458

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            K++   ++ N  ++SI I+   +SG + +A +    ++      +V  Y  + +G C  
Sbjct: 459 TKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVE 518

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
           G  + A+ L+     N    P    Y + IL + +  E +   ++L EM   G  P ++
Sbjct: 519 GLFNEALALLSKMEDN-GCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRPRQI 576



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 196/430 (45%), Gaps = 8/430 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I     +  K+ +    PD   +T +I+ L  +  +       +++       D ++Y
Sbjct: 134 GLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISY 193

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI GLCK G      +L + +  N +  +  +Y  +I+ +     V +A DL  +++ 
Sbjct: 194 GTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMIS 253

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  Y+++I G C + + + A  LF   + +++ PD  T N L+    + G+M  
Sbjct: 254 KGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKE 313

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYNIL 418
              +   M  +K  +  +   +   + G    + +  A  +F  +   G +  +  Y+I+
Sbjct: 314 GKTVFDMM--MKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIM 371

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    +I +  +A+ LF +M   N+  + +++S  I    +SG I  A +  +++ +   
Sbjct: 372 INGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGV 431

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P++  YN +   LCKI ++D A+ L+   L +    P  + Y++ I  +C+SG+ E   
Sbjct: 432 PPTIRTYNSILDALCKIHQVDKAIALLTK-LKDKGIQPNMYTYSILIKGLCQSGKLEDAR 490

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           +V   +  +G   N    + +I G C  G   EA  + + + +   + +A T  Y+ I++
Sbjct: 491 KVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKT--YEIIIL 548

Query: 599 EHMKKKTADL 608
              KK   D+
Sbjct: 549 SLFKKDENDM 558


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 184/409 (44%), Gaps = 37/409 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+G++   L++L+++  + C+P V  YT +I     E  +D  L++ +EM    ++ D+ 
Sbjct: 201 SRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMF 260

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I G+CK G V R  E+ R ++  G   D   Y +L+  L+ +GK  +   L+  +
Sbjct: 261 TYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM 320

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
                  ++  Y+ +I  LCR  + ++A  L ++  +  L PD  + +PL+      GR+
Sbjct: 321 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 380

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNIL 418
           D                                   +A++  E +   G    +  YN +
Sbjct: 381 D-----------------------------------VAIEFLETMISDGCLPDIVNYNTV 405

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L + G+  +AL +FGK+  +    NS S++        SGD + A     +++    
Sbjct: 406 LATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGI 465

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P    YN +   LC+ G +D A  L+ D + +    P+   Y + +L  C++   E  I
Sbjct: 466 DPDEITYNSMISCLCREGMVDKAFELLVD-MRSCEFHPSVVTYNIVLLGFCKAHRIEDAI 524

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           +VL+ M   GC PNE   + +I G+   G   EA ++  +L     ++E
Sbjct: 525 DVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRINAISE 573



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 112/266 (42%), Gaps = 35/266 (13%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           M  +G +    E++  +    C+PDV +Y  ++R L  +   +   ++  +M  +  + +
Sbjct: 269 MCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 328

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ Y  LI  LC+ G++     L + MKE G+  D   Y  LI     EG++  A + L+
Sbjct: 329 VVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLE 388

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF----EV-------------------- 333
            ++  G   D+  YN+++  LC+  + D+A ++F    EV                    
Sbjct: 389 TMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSG 448

Query: 334 -----------TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
                       V + + PD  T N ++ C    G +D  F+LL  M   +F  +     
Sbjct: 449 DKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYN 508

Query: 383 FFEFLVGKEERIMMALDVFEELKGKG 408
                  K  RI  A+DV + + G G
Sbjct: 509 IVLLGFCKAHRIEDAIDVLDSMVGNG 534


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/457 (24%), Positives = 198/457 (43%), Gaps = 39/457 (8%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR  E L +L  M R+ C PD   Y  +I  L A+  ++    + +EM      ADV  +
Sbjct: 186 GRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTF 245

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL------------------ 283
             ++ GLC  GR+     L   M   G + +   YG L++GL                  
Sbjct: 246 NDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPE 305

Query: 284 ---------VG----EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
                    +G    +GK+ +A +L + +   G   D   Y+ +I GLC++ +   A KL
Sbjct: 306 LNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKL 365

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--V 388
                    AP   T   LL      G  DN   +L  M     S+  +LE +   +  V
Sbjct: 366 LREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSM--NLEGYNGMICAV 423

Query: 389 GKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS 447
            K+ R+  A+   +E+K +GY   +  YN ++  L    ++++A YLF  +    +  N+
Sbjct: 424 CKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANA 483

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
           ++++  I   + +G   +A    N ++       + +YN L K LC+ G +D ++ML+ +
Sbjct: 484 ITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSE 543

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            +      P    Y L I  +C++      +E+  EM  +   P+ V  + +I+G+CK G
Sbjct: 544 -MAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMG 602

Query: 568 TLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
            +  A  +   L    +   A+ I Y+ ++  H K +
Sbjct: 603 WMHAALNLLEKLHNEDV--HADIITYNILISWHCKAR 637



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 160/401 (39%), Gaps = 20/401 (4%)

Query: 171 ADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK 230
           A QV E     GR+ E+              +V  +  +I     +  L     ++E M 
Sbjct: 290 ASQVEEARTMLGRVPEL--------------NVVLFNTVIGRCLLDGKLKEAAELYETMG 335

Query: 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
                 D   Y  LI GLCK GR+    +L REM++ G       Y +L+      G   
Sbjct: 336 SKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWD 395

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
               +L+ + D G   +L  YN +I  +C+ ++ D A +  +        PD  T N ++
Sbjct: 396 NIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTII 455

Query: 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG 408
                  +M+    L   +  L   V A+   +   +    +      A+ +  ++   G
Sbjct: 456 YHLCNNNQMEEAEYLFENL--LHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHG 513

Query: 409 YS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
            S  +  YN L+ AL   G V +++ L  +M    ++ N++S+++ I    ++  + +A 
Sbjct: 514 CSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDAL 573

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
           E   +++     P +  YN L  GLCK+G + AA+ L+   L N         Y + I  
Sbjct: 574 ELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEK-LHNEDVHADIITYNILISW 632

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
            C++        +LN     G  PNE     ++    +  T
Sbjct: 633 HCKARLLHDASMLLNRAVTSGITPNERTWGIMVQNFVRKST 673



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 97/465 (20%), Positives = 192/465 (41%), Gaps = 56/465 (12%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM-KKDLVEADVMA 240
           GR   +L+ L    R    P   +Y  ++   A        L ++  M  +D V      
Sbjct: 117 GRALHLLDQLP--HRFAVSPSFRSYNTVLAAFARADCHTDVLSLYRRMVHRDRVPPTTFT 174

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +      LC+ GR      + R M  +G + D  +Y  +I  L  +G V +A  LL ++ 
Sbjct: 175 FSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMF 234

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G  AD+  +N I+ GLC + +  +A +L +  +     P+  T   LL       +++
Sbjct: 235 LMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVE 294

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGK---EERIMMALDVFEELKGKGY-SSVPIYN 416
               +L ++ +L   +       F  ++G+   + ++  A +++E +  KG       Y+
Sbjct: 295 EARTMLGRVPELNVVL-------FNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYS 347

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG--DILEA-------- 466
           IL+  L ++G +  A+ L  +M       + ++++I +     +G  D + A        
Sbjct: 348 ILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDK 407

Query: 467 -----CECHNKII-----------------EMSQV---PSVAAYNCLTKGLCKIGEIDAA 501
                 E +N +I                 EM      P +  YN +   LC   +++ A
Sbjct: 408 GLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEA 467

Query: 502 MMLVRDCL--GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
             L  + L  G VA+  T   Y   I  + R+G  +  I + N+M   GC  + V  + +
Sbjct: 468 EYLFENLLHEGVVANAIT---YNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGL 524

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           I  +C+ G ++ +  + + + E+ +  + N + Y+ ++ E  K +
Sbjct: 525 IKALCRDGNVDRSIMLLSEMAEKGI--KPNNVSYNLLISELCKTR 567



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 109/247 (44%), Gaps = 19/247 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           + KG+  +  +Y  L +   RN ++     + E+M  +G                   R+
Sbjct: 370 EDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRM 429

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            + +  +++M+    KPD+  Y  +I  L     ++    ++E +  + V A+ + Y TL
Sbjct: 430 DDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTL 489

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  L + G       L  +M  +G  +D   Y  LI+ L  +G V ++  LL ++ + G 
Sbjct: 490 IHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGI 549

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           + +   YN +I  LC+ ++   A +L +  +  +L PD  T N L+    +MG M     
Sbjct: 550 KPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALN 609

Query: 365 LLAQMEK 371
           LL ++  
Sbjct: 610 LLEKLHN 616


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/454 (23%), Positives = 194/454 (42%), Gaps = 56/454 (12%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEM-------------------LEILEKM 194
           +YNA+     + N   AA QV   M ++G + ++                   L++L+++
Sbjct: 139 AYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQL 198

Query: 195 RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
             + C P V  YT +I     E  ++  +++ EEM    +  D+  Y  +I G+CK G V
Sbjct: 199 LLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMV 258

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
            R  EL   +   G   D   Y +L+   + +GK  +   L+ ++   G   +   Y+ +
Sbjct: 259 ERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSIL 318

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
           I  LCR  + D+A  + +V ++ +L PD  + +PL+    + GR+D              
Sbjct: 319 ISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLD-------------- 364

Query: 375 SVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALY 433
                                +A+ + + +   G    +  YN ++ AL + G   +AL 
Sbjct: 365 ---------------------LAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALE 403

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           +F K+RG+    N  S++  I      GD   A      +I     P    YN L   LC
Sbjct: 404 IFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLC 463

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           + G ++ A+ L+ D +      PT   Y + +L +C+    +  I +  EM ++GC PNE
Sbjct: 464 RDGLVEEAIGLLDD-MEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNE 522

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
                +I G+   G   EA ++  +L  R ++++
Sbjct: 523 TTYILLIEGIGFAGWRTEAMELANSLFSRDVISQ 556



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 188/405 (46%), Gaps = 14/405 (3%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           + + ++EILE       +PDVFAY A+I        ++A  +V   MK      D++ Y 
Sbjct: 121 KASRVMEILESHT----EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYN 176

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            +I  LC   ++    ++  ++  +  +     Y +LIE  + EG + +A  LL++++  
Sbjct: 177 IMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLAR 236

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D+  YN+II G+C+    ++A +L          PD  + N LL      G+ D  
Sbjct: 237 GLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEG 296

Query: 363 FKLLAQM-----EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNI 417
            KL+A+M     E  K + +  +     F    E   ++ + + +EL    YS    Y+ 
Sbjct: 297 EKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYS----YDP 352

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ AL + G +  A+ +   M       + ++++  +    ++G+  +A E  NK+  M 
Sbjct: 353 LISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMG 412

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P+V++YN +   L   G+   A+ +V   +      P E  Y   I  +CR G  E+ 
Sbjct: 413 CPPNVSSYNTMISALWSCGDRSRALGMVPAMISK-GVDPDEITYNSLISCLCRDGLVEEA 471

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           I +L++M Q G  P  +  + ++ G+CK   +++A  +F  + E+
Sbjct: 472 IGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEK 516



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 157/402 (39%), Gaps = 77/402 (19%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  E L  LE +      PDV   T +I+     +N++   RV E ++    E DV AY
Sbjct: 82  GKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESH-TEPDVFAY 140

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I G CK  R                                   +  A  +L  +  
Sbjct: 141 NAVISGFCKVNR-----------------------------------IEAATQVLNRMKA 165

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G+  D+  YN +IG LC  ++   A K+ +  + D+  P   T   L+      G ++ 
Sbjct: 166 RGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINE 225

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
             KLL +M  L   +  D+  +   + G  KE  +  A ++   L  KG    V  YNIL
Sbjct: 226 AMKLLEEM--LARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNIL 283

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + A L  G+  +   L  +M     E N +++SI                          
Sbjct: 284 LRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSI-------------------------- 317

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
                    L   LC+ G ID A+ +++  +    + P  + Y   I  +C+ G  +  I
Sbjct: 318 ---------LISSLCRFGRIDEAISVLKVMIEKELT-PDTYSYDPLISALCKEGRLDLAI 367

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
            +++ M   GC P+ V  + I++ +CK+G   +A ++F  LR
Sbjct: 368 GIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLR 409



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 13/192 (6%)

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           +L   E L  KGY+  V +   L+        ++KA  +   +   + E +  +++  I 
Sbjct: 87  SLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILES-HTEPDVFAYNAVIS 145

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLG 510
              +   I  A +  N++     +P +  YN +   LC   ++  A+     +L+ +C+ 
Sbjct: 146 GFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCM- 204

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
                PT   Y + I      G   + +++L EM   G  P+    +AII GMCK G +E
Sbjct: 205 -----PTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVE 259

Query: 571 EARKVFTNLRER 582
            A ++ T+L  +
Sbjct: 260 RAAELITSLTSK 271


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 123/518 (23%), Positives = 220/518 (42%), Gaps = 35/518 (6%)

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ 181
           V + LK + N +    FF        ++H  ++Y  +   L R         + + M   
Sbjct: 44  VLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMD 103

Query: 182 G----------------RIA---EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
           G                R+    + L++  ++    CKP V  Y  ++  L +E      
Sbjct: 104 GINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMI 163

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
             ++  MKKD +  +V  Y  L+  LCK  RV   H+LF EM   G   D   Y  ++  
Sbjct: 164 NPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSS 223

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           L   GK+  A +L        ++  + +YN++I G+C+  + + A KL    + + + P+
Sbjct: 224 LCKAGKIDDAREL-----AGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPN 278

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDV 400
             + + ++      G ++  F L AQM        A++  F   + G     ++  ALD+
Sbjct: 279 VVSYSCIINSLCVSGNVELAFALFAQM--FLRGCDANIHTFTPLIKGCFMRGKLYEALDL 336

Query: 401 FEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           ++ +   G   +V  YN L+  L   G +++AL +  +M+      N  ++SI I    +
Sbjct: 337 WKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAK 396

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           SGD++ A E  N++I     P+V  Y C+   LCK    D A  LV   +      P   
Sbjct: 397 SGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEK-MTLEGCTPNTI 455

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            +   I  +C +G  E  +++L  M   GC PN    + ++  + +    EEA  +F  +
Sbjct: 456 TFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEI 515

Query: 580 RERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFG 617
             R L  + N + Y+ +L    +   A ++   L+ FG
Sbjct: 516 EARNL--QPNLVTYNTVLYGFSR---AGMMGEALQLFG 548



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 155/381 (40%), Gaps = 36/381 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G +     +  +M    C  ++  +T +I+       L   L +W+ M +D  E +V+A
Sbjct: 292 SGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVA 351

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI GLC  G +    ++  +M+ +G L +   Y +LI+G    G +  A +    ++
Sbjct: 352 YNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMI 411

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G R ++  Y  ++  LC+   FD+A  L E    +   P+  T N             
Sbjct: 412 SHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFN------------- 458

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILM 419
                                 F + L G   R+  A+ + E ++G G   ++  YN L+
Sbjct: 459 ---------------------TFIKGLCGN-GRVEWAMKLLERMQGHGCLPNITTYNELL 496

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            AL  + + ++A  LF ++   NL+ N ++++  +     +G + EA +   K +     
Sbjct: 497 DALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTA 556

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P    YN +    CK G++  A  LV          P    Y   I   C     E+ + 
Sbjct: 557 PDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMA 616

Query: 540 VLNEMTQEGCPPNEVICSAII 560
            L++   +G  PN    +A++
Sbjct: 617 FLDKAINQGICPNFATWNALV 637



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 144/314 (45%), Gaps = 6/314 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ E L++ + M ++ C+P+V AY  +I  L +  +L+  L+V ++M++     +V  
Sbjct: 327 RGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTT 386

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G  K G +V   E +  M  +G   +   Y  +++ L       +A  L++ + 
Sbjct: 387 YSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMT 446

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   +   +N+ I GLC   + + A KL E        P+ +T N LL     M + +
Sbjct: 447 LEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYE 506

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYSSVPI-YNI 417
             F L  ++E    ++  +L  +   L G     MM  AL +F +   +G +   I YN 
Sbjct: 507 EAFGLFQEIEAR--NLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNT 564

Query: 418 LMGALLEIGEVKKALYLFGKMRGLN-LEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           ++ A  + G+VK A  L  ++  +     + ++++  I       +I EA    +K I  
Sbjct: 565 MIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQ 624

Query: 477 SQVPSVAAYNCLTK 490
              P+ A +N L +
Sbjct: 625 GICPNFATWNALVR 638



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 16/224 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q G + N  +YN L + L  N                G + E L++ ++M+R+ C P+V 
Sbjct: 342 QDGCEPNVVAYNTLIHGLCSN----------------GSLEEALQVCDQMQRSGCLPNVT 385

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y+ +I   A   +L      W  M       +V+ Y  ++  LCK     + + L  +M
Sbjct: 386 TYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKM 445

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              G   +   +   I+GL G G+V  A  LL+ +   G   ++  YN ++  L R+ ++
Sbjct: 446 TLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKY 505

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
           ++A+ LF+     +L P+  T N +L   +  G M    +L  +
Sbjct: 506 EEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGK 549


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/457 (23%), Positives = 212/457 (46%), Gaps = 23/457 (5%)

Query: 128 VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEM 187
           V+ N     +  H     +G + + +++N L   L R +  R A  + E M+  G +   
Sbjct: 171 VDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLL--- 227

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
                        PD   +T +++    E NLD  +RV E+M +       +    L+ G
Sbjct: 228 -------------PDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNG 274

Query: 248 LCKGGRVVRGHELFREMK-ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
            CK GR+        EM    G   D+  + +L+ GL   G V  A +++  ++  G+  
Sbjct: 275 FCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDP 334

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D+  YNS+I GLC++ + D+A K+    ++ D +P+  T N ++    +  +++   KL 
Sbjct: 335 DIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLA 394

Query: 367 AQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
             +      +  D+  +   + G        +A+++++E+K KG +     YN+L+ +L 
Sbjct: 395 LVLTGK--GILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLC 452

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
             G++++AL L  +M       N ++++  I    ++  I EA E  +++       +  
Sbjct: 453 FRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSV 512

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            YN L  GLCK   ++ A  L+ D +      P +F Y   + + C++G+ +K  +++  
Sbjct: 513 TYNTLIDGLCKSERVEEASQLM-DQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQT 571

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           M  +GC P+ V    +I+G+CK G +E A K+   ++
Sbjct: 572 MASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQ 608



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 106/527 (20%), Positives = 219/527 (41%), Gaps = 68/527 (12%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177
           TP  +   L+ E + +     F+WA KQ  +K + + +  + + L +   F A   + + 
Sbjct: 55  TPTQLLHSLRREEDSSAVIHLFYWASKQPNFKPSSSIFKEVLHKLGKAGEFDAMKDILKE 114

Query: 178 MD-------------------SQGRIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAER 217
           M                    S G   E+L+ ++ M        +   Y  ++ VL    
Sbjct: 115 MKISLSVIDNDSLLVFIESYASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGN 174

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
            L         M    +  DV  +  LI  LC+  ++     L  EM++ G+L D   + 
Sbjct: 175 KLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFT 234

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQ 336
            +++G + EG +  A  + + +V++G        N ++ G C+  + ++A +   E++++
Sbjct: 235 TIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLR 294

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
           +   PD  T N L+   ++ G + +                                   
Sbjct: 295 EGFFPDKYTFNMLVNGLSKTGHVKH----------------------------------- 319

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           AL+V + +  +G+   +  YN L+  L ++GEV +A+ +  +M   +   N+++++  I 
Sbjct: 320 ALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIIS 379

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
              +   + EA +    +     +P V  YN L +GLC       AM L ++ +      
Sbjct: 380 TLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKE-MKTKGCH 438

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P EF Y + I  +C  G+ ++ + +L EM   GC  N +  + +I G CK+  + EA ++
Sbjct: 439 PDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEI 498

Query: 576 FTNLRERKLLTEANTIVYDEIL--------IEHMKKKTADLVLSGLK 614
           F  +  + +    N++ Y+ ++        +E   +    +++ GL+
Sbjct: 499 FDQMELQGV--SRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLR 543



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 117/471 (24%), Positives = 208/471 (44%), Gaps = 48/471 (10%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG------------ 182
           A +F      ++G+  +  ++N L   LS+    + A +V ++M  +G            
Sbjct: 284 ALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLI 343

Query: 183 -------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
                   + E +++L +M    C P+   Y  +I  L  E  ++   ++   +    + 
Sbjct: 344 SGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGIL 403

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            DV  Y +LI GLC         EL++EMK  G   D   Y +LI+ L   GK+ +A +L
Sbjct: 404 PDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNL 463

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
           LK++  SG   ++  YN++I G C+ K+  +A ++F+      ++ +  T N L+    +
Sbjct: 464 LKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCK 523

Query: 356 MGRMDNFFKLLAQ--MEKL---KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS 410
             R++   +L+ Q  ME L   KF+  + L  F      K   I  A D+ + +   G  
Sbjct: 524 SERVEEASQLMDQMIMEGLRPDKFTYNSLLTYF-----CKAGDIKKAADIVQTMASDGCE 578

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFG--KMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
             +  Y  L+  L + G V+ A  L    +M+G+NL  +  +++  IQ         EA 
Sbjct: 579 PDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPH--AYNPVIQALFRRKRSKEAV 636

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCK----IGE-IDAAM-MLVRDCLGNVASGPTEFKY 521
               ++IE ++ P    Y  + +GLC+    IGE +D  M ML R   G V    + +  
Sbjct: 637 RLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLER---GYVPEFSSFYML 693

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           A  +  +   G   K+I+++  M +     NEV    +I G  K    ++A
Sbjct: 694 AEGLFSLAMVGTLIKLIDMV--MEKAKFSDNEV---TMIRGFLKISKYQDA 739


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 123/518 (23%), Positives = 220/518 (42%), Gaps = 35/518 (6%)

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ 181
           V + LK + N +    FF        ++H  ++Y  +   L R         + + M   
Sbjct: 44  VLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMD 103

Query: 182 G----------------RIA---EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
           G                R+    + L++  ++    CKP V  Y  ++  L +E      
Sbjct: 104 GINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMI 163

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
             ++  MKKD +  +V  Y  L+  LCK  RV   H+LF EM   G   D   Y  ++  
Sbjct: 164 NPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSS 223

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           L   GK+  A +L        ++  + +YN++I G+C+  + + A KL    + + + P+
Sbjct: 224 LCKAGKIDDAREL-----AGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPN 278

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDV 400
             + + ++      G ++  F L AQM        A++  F   + G     ++  ALD+
Sbjct: 279 VVSYSCIINSLCVSGNVELAFALFAQM--FLRGCDANIHTFTPLIKGCFMRGKLYEALDL 336

Query: 401 FEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           ++ +   G   +V  YN L+  L   G +++AL +  +M+      N  ++SI I    +
Sbjct: 337 WKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAK 396

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           SGD++ A E  N++I     P+V  Y C+   LCK    D A  LV   +      P   
Sbjct: 397 SGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEK-MTLEGCTPNTM 455

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            +   I  +C +G  E  +++L  M   GC PN    + ++  + +    EEA  +F  +
Sbjct: 456 TFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEI 515

Query: 580 RERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFG 617
             R L  + N + Y+ +L    +   A ++   L+ FG
Sbjct: 516 EARNL--QPNLVTYNTVLYGFSR---AGMMGEALQLFG 548



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 155/381 (40%), Gaps = 36/381 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G +     +  +M    C  ++  +T +I+       L   L +W+ M +D  E +V+A
Sbjct: 292 SGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVA 351

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI GLC  G +    ++  +M+ +G L +   Y +LI+G    G +  A +    ++
Sbjct: 352 YNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMI 411

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G R ++  Y  ++  LC+   FD+A  L E    +   P+  T N             
Sbjct: 412 SHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFN------------- 458

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILM 419
                                 F + L G   R+  A+ + E ++G G   ++  YN L+
Sbjct: 459 ---------------------TFIKGLCGN-GRVEWAMKLLERMQGHGCLPNITTYNELL 496

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            AL  + + ++A  LF ++   NL+ N ++++  +     +G + EA +   K +     
Sbjct: 497 DALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTA 556

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P    YN +    CK G++  A  LV          P    Y   I   C     E+ + 
Sbjct: 557 PDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMA 616

Query: 540 VLNEMTQEGCPPNEVICSAII 560
            L++   +G  PN    +A++
Sbjct: 617 FLDKAINQGICPNFATWNALV 637



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 144/314 (45%), Gaps = 6/314 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ E L++ + M ++ C+P+V AY  +I  L +  +L+  L+V ++M++     +V  
Sbjct: 327 RGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTT 386

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G  K G +V   E +  M  +G   +   Y  +++ L       +A  L++ + 
Sbjct: 387 YSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMT 446

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   +   +N+ I GLC   + + A KL E        P+ +T N LL     M + +
Sbjct: 447 LEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYE 506

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYSSVPI-YNI 417
             F L  ++E    ++  +L  +   L G     MM  AL +F +   +G +   I YN 
Sbjct: 507 EAFGLFQEIEAR--NLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNT 564

Query: 418 LMGALLEIGEVKKALYLFGKMRGLN-LEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           ++ A  + G+VK A  L  ++  +     + ++++  I       +I EA    +K I  
Sbjct: 565 MIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQ 624

Query: 477 SQVPSVAAYNCLTK 490
              P+ A +N L +
Sbjct: 625 GICPNFATWNALVR 638



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 16/224 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q G + N  +YN L + L  N                G + E L++ ++M+R+ C P+V 
Sbjct: 342 QDGCEPNVVAYNTLIHGLCSN----------------GSLEEALQVCDQMQRSGCLPNVT 385

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y+ +I   A   +L      W  M       +V+ Y  ++  LCK     + + L  +M
Sbjct: 386 TYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKM 445

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              G   +   +   I+GL G G+V  A  LL+ +   G   ++  YN ++  L R+ ++
Sbjct: 446 TLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKY 505

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
           ++A+ LF+     +L P+  T N +L   +  G M    +L  +
Sbjct: 506 EEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGK 549


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 190/462 (41%), Gaps = 60/462 (12%)

Query: 138 FFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRN 197
           FF WAG Q  Y H   SYN L                 E++   GR   +      M   
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLL----------------EVLAKSGRCDHVYGTYNDMLGA 46

Query: 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
            C P+ + Y  ++R L   +  +    V+  M       +V +Y  LI GLC+G +V   
Sbjct: 47  GCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEA 106

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
            EL  EM + G   +   YG L+ GL   GK+ +A DL   +V  G   D  +YN +I G
Sbjct: 107 AELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDG 166

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA---EMGRMDNFFKLLAQMEKLKF 374
             +     +AY+LFE  ++    P   T N LL   +   E GR+ + FK          
Sbjct: 167 FSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFK---------- 216

Query: 375 SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYL 434
                                      + L+     ++  +N L+    ++G++ +A  L
Sbjct: 217 ---------------------------DMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRL 249

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           F +MR L    + +S++  ++     G   EA     ++I     P + +YN L  G  K
Sbjct: 250 FLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSK 309

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
            G +D A+ L  + +      P  F Y+  I  +CR+G+      V  +M   G  P+  
Sbjct: 310 SGALDHAIKLFYE-IPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAA 368

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERK---LLTEANTIVY 593
           +   ++ G+C+   L E+ ++F  + + +   L+ E N ++Y
Sbjct: 369 VVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMY 410



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 135/331 (40%), Gaps = 38/331 (11%)

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           Y  L+E L   G+         D++ +G   +   Y  ++  LC+ ++F++A  +F    
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMA 79

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM 395
               +P+  + + L+       ++D   +LL +M                          
Sbjct: 80  AQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEM-------------------------- 113

Query: 396 MALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
                   + G    +V  Y  L+  L ++G++K+A+ LF +M       + + +++ I 
Sbjct: 114 --------IDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLID 165

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
              + GD+ EA     +++E   +P+V  YN L  G  + GE      L +D L      
Sbjct: 166 GFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDML-RQGCV 224

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P  F +   +   C+ G+  +   +  EM   GCPP+ V  + ++ GMC  G   EA+++
Sbjct: 225 PNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRL 284

Query: 576 FTNLRERKLLTEANTIVYDEILIEHMKKKTA 606
              LRE         IV   ILI+   K  A
Sbjct: 285 ---LREMIRSGVGPDIVSYNILIDGYSKSGA 312



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 8/161 (4%)

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
            +LS++  ++   +SG        +N ++    VP+   Y  L + LC+    + A  + 
Sbjct: 16  GTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVF 75

Query: 506 RDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           R   G  A G  P  F Y++ I  +CR  + ++  E+LNEM   G  PN V   +++SG+
Sbjct: 76  R---GMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGL 132

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           CK G L+EA  +F+ +  R      + +VY+ +LI+   KK
Sbjct: 133 CKMGKLKEAVDLFSRMVYRG--CPPDGVVYN-VLIDGFSKK 170


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 199/418 (47%), Gaps = 8/418 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E     E+M++   KPD  A +A+I     E ++D  LR+ + M    +  +++ Y 
Sbjct: 25  RMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYN 84

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI GLCK G++ +  E+ + M   G   +   + +LIEG   E  +G+A +LL ++   
Sbjct: 85  VLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKR 144

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
                   Y ++I GLC  K    A KL E      L P+    + L++  A  GR++  
Sbjct: 145 NLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEA 204

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYSSVPI-YNILM 419
            +LL  M      VA D+  +   +  + K  ++  A     E++G+G     + +   +
Sbjct: 205 RRLLDGMS--CSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFI 262

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               + G++ +A   F +M    L  N+  +++ I  H ++G+++EA      +  +  +
Sbjct: 263 LGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVL 322

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P V   +    GL K G +  A+ +  + L      P  F Y+  I   C+ GE EK  E
Sbjct: 323 PDVQTCSAFIHGLLKNGRVQEALKVFSE-LKEKGLVPDVFTYSSLISGFCKQGEVEKAFE 381

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           + +EM  +G  PN  I +A++ G+CK G ++ ARK+F  + E+ L  E +++ Y  ++
Sbjct: 382 LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGL--EPDSVTYSTMI 437



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 193/416 (46%), Gaps = 8/416 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ +  EIL+ M    CKP+   +  +I     E N+   L + +EM+K  +    ++Y
Sbjct: 94  GKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSY 153

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I GLC    +   ++L  +M  +G+  +  +Y  LI G   EG++ +A  LL  +  
Sbjct: 154 GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSC 213

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           SG   D+  YN+II  L +  + ++A           L PD  T    ++  ++ G+M  
Sbjct: 214 SGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTE 273

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
             K   +M  L   +  +   +   + G  K   +M AL +F  L   G    V   +  
Sbjct: 274 AAKYFDEM--LDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAF 331

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  LL+ G V++AL +F +++   L  +  ++S  I    + G++ +A E H+++     
Sbjct: 332 IHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGI 391

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P++  YN L  GLCK G+I  A  L  D +      P    Y+  I   C+S    +  
Sbjct: 392 APNIFIYNALVDGLCKSGDIQRARKLF-DGMPEKGLEPDSVTYSTMIDGYCKSENVAEAF 450

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA--NTIV 592
            + +EM  +G  P+  + +A++ G CK G +E+A  +F  + ++   T    NT++
Sbjct: 451 SLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLI 506



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 197/424 (46%), Gaps = 38/424 (8%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+GRI E   +L+ M  +   PD+F Y A+I  L+    ++       E++   ++ D +
Sbjct: 197 SEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAV 256

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            +   I+G  K G++    + F EM ++G++ +  +Y VLI G    G + +A  + + L
Sbjct: 257 TFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHL 316

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   D+   ++ I GL +  +  +A K+F    +  L PD  T + L+         
Sbjct: 317 HALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLIS-------- 368

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
                         F    ++EK FE              + +E+  KG + ++ IYN L
Sbjct: 369 -------------GFCKQGEVEKAFE--------------LHDEMCLKGIAPNIFIYNAL 401

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L + G++++A  LF  M    LE +S+++S  I  + +S ++ EA    +++     
Sbjct: 402 VDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGV 461

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P    YN L  G CK G+++ AM L R+ L       T   +   I   C+S + ++  
Sbjct: 462 QPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK--GFATTLSFNTLIDGYCKSCKIQEAS 519

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           ++  EM  +   P+ V  + +I   CK G +EEA  +F  ++ER L+ +    ++++++ 
Sbjct: 520 QLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVA 579

Query: 599 EHMK 602
           + +K
Sbjct: 580 KGVK 583



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 126/507 (24%), Positives = 205/507 (40%), Gaps = 85/507 (16%)

Query: 155 YNALAYCLSRNNLFRAADQVPELMDSQGR---------------------IAEMLEILEK 193
           YNA+  CLS+      A     L++ QGR                     + E  +  ++
Sbjct: 223 YNAIISCLSKAGKMEEASTY--LLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDE 280

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M  +   P+   YT +I       NL   L ++  +    V  DV      I GL K GR
Sbjct: 281 MLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGR 340

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           V    ++F E+KE G++ D   Y  LI G   +G+V KA +L  ++   G   ++ IYN+
Sbjct: 341 VQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNA 400

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           ++ GLC+     +A KLF+   +  L PD  T + ++         D +           
Sbjct: 401 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMI---------DGYC---------- 441

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKKAL 432
                           K E +  A  +F E+  KG      +YN L+    + G+++KA+
Sbjct: 442 ----------------KSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAM 485

Query: 433 YLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
            LF +M  +G      +LSF+  I  + +S  I EA +   ++I    +P    Y  +  
Sbjct: 486 NLFREMLQKGF---ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVID 542

Query: 491 GLCKIGEIDAAMMLVRDCLGN--------------VASG--PTEFKYALTILHVCRSGEA 534
             CK G+++ A +L ++                  VA G  P E  Y L I   C+    
Sbjct: 543 WHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNL 602

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTI 591
            +  ++ +E+  +G      I   +I+ +CK   L EA K+   + E  L   L   +T+
Sbjct: 603 VEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTL 662

Query: 592 VYDEILIEHMKKKTADLVLSGLKFFGL 618
           V      E  K   A  V  G+K  GL
Sbjct: 663 VRS--FHEAGKMDEATRVFEGVKSLGL 687



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 179/414 (43%), Gaps = 25/414 (6%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E L I   +      PDV   +A I  L     +   L+V+ E+K+  +  DV  Y
Sbjct: 304 GNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTY 363

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI G CK G V +  EL  EM   GI  +  IY  L++GL   G + +A  L   + +
Sbjct: 364 SSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPE 423

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   Y+++I G C+ +   +A+ LF       + P     N L+  C + G M+ 
Sbjct: 424 KGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEK 483

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
              L  +M +  F+         +    K  +I  A  +F+E+  K      + Y  ++ 
Sbjct: 484 AMNLFREMLQKGFATTLSFNTLIDGYC-KSCKIQEASQLFQEMIAKQIMPDHVTYTTVID 542

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G++++A  LF +M+  NL V+++ F++                   K++     P
Sbjct: 543 WHCKAGKMEEANLLFKEMQERNLIVDTV-FAL-----------------FEKMVAKGVKP 584

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN--VASGPTEFKYALTILHVCRSGEAEKII 538
               Y  +    CK   +  A  L  + +G   +  G     + L I  +C+  +  +  
Sbjct: 585 DEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTI---HDLLITALCKREDLTEAS 641

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           ++L+EM + G  P+   CS ++    + G ++EA +VF  ++   L+ +  T++
Sbjct: 642 KLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLI 695



 Score = 42.4 bits (98), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 1/105 (0%)

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           E   VP+   Y  +T GLC+   ++ A +   + +      P     +  I    R G+ 
Sbjct: 3   EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEE-MQKTGLKPDYNACSALIDGFMREGDI 61

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           ++++ + + M   G P N +  + +I G+CK G +E+A ++   +
Sbjct: 62  DEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGM 106


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/454 (23%), Positives = 193/454 (42%), Gaps = 56/454 (12%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEM-------------------LEILEKM 194
           +YNA+     + N   AA QV   M ++G + ++                   L +L+++
Sbjct: 149 AYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQL 208

Query: 195 RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
             + C P V  YT +I     E  ++  +++ EEM    +  D+  Y  +I G+CK G V
Sbjct: 209 LLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMV 268

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
            R  EL   +   G   D   Y +L+   + +GK  +   L+ ++   G   +   Y+ +
Sbjct: 269 ERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSIL 328

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
           I  LCR  + D+A  + +V ++ +L PD  + +PL+    + GR+D              
Sbjct: 329 ISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLD-------------- 374

Query: 375 SVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALY 433
                                +A+ + + +   G    +  YN ++ AL + G   +AL 
Sbjct: 375 ---------------------LAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALE 413

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           +F K+RG+    N  S++  I      GD   A      +I     P    YN L   LC
Sbjct: 414 IFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLC 473

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           + G ++ A+ L+ D +      PT   Y + +L +C+    +  I +  EM ++GC PNE
Sbjct: 474 RDGLVEEAIGLLDD-MEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNE 532

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
                +I G+   G   EA ++  +L  R ++++
Sbjct: 533 TTYILLIEGIGFAGWRTEAMELANSLFSRDVISQ 566


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 207/451 (45%), Gaps = 26/451 (5%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           K KG   N  +YN L   YC                    G + E  +++E M RN   P
Sbjct: 275 KSKGLSPNKHTYNMLVCGYC------------------RLGLLKEATKVIEIMTRNNLLP 316

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
            V+ Y  ++     +  +D   R+ +EM+K  V  DV+ Y TLI G  +       + L 
Sbjct: 317 TVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLI 376

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            EM + G+  +   Y ++++ +  +G + +A   L  + ++G   D   YN++IG  C+ 
Sbjct: 377 EEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKA 436

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            +  KA+++ +      L  D  T+N +L C     ++D  + LL    K  + +  D  
Sbjct: 437 GKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYIL--DEV 494

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM 438
            +   ++G  K+E+   AL++++E+K +    S   YN ++G L +  +V +A+    +M
Sbjct: 495 SYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEM 554

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
               L  +  +++I I      G++ +A + HN++IE    P V   N L +GLC+ G +
Sbjct: 555 LENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGML 614

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           + A+ L  + L +         Y   I  +C+ G+ E   ++L EM  +   P++     
Sbjct: 615 EKALKLF-NTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKV 673

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           II+ +   G ++EA +    + E  ++ + N
Sbjct: 674 IIAALTDAGRIKEAEEFTLKMVESGIVHDQN 704



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 97/423 (22%), Positives = 182/423 (43%), Gaps = 14/423 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + ++ + L+ + KM    C PD  +Y  ++  L   R L     +  +MK   +  +   
Sbjct: 226 ESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHT 285

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ G C+ G +    ++   M  N +L     Y +L+ G   +GK+ +A  +  ++ 
Sbjct: 286 YNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEME 345

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 D+  YN++I G  + +   + Y L E   +  +  +  T N +L    + G M 
Sbjct: 346 KMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMT 405

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYN 416
                L +ME+   S        +  L+G   K  ++  A  + +E+  KG        N
Sbjct: 406 EATTTLDKMEENGLSPDC---VTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLN 462

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV--ESGDILEACECHNKII 474
            ++  L    ++ +A  L          ++ +S+ I I  +   E GD   A    +++ 
Sbjct: 463 TILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGD--RALNLWDEMK 520

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           E   +PS   YN +  GLC+  ++D A+  + + L N    P E  Y + I   C  G  
Sbjct: 521 ERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLEN-GLVPDETTYNIIIHGFCLEGNV 579

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           EK  +  NEM +    P+   C+ ++ G+C+ G LE+A K+F  L  +    + + + Y+
Sbjct: 580 EKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKG--KDIDVVTYN 637

Query: 595 EIL 597
            I+
Sbjct: 638 TII 640



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 178/427 (41%), Gaps = 40/427 (9%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           +KG K N  +YN                 + + M  +G + E    L+KM  N   PD  
Sbjct: 381 KKGVKCNAVTYNI----------------ILKWMCKKGNMTEATTTLDKMEENGLSPDCV 424

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  +I        +    R+ +EM    ++ D     T++  LC   ++   + L    
Sbjct: 425 TYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSA 484

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            + G ++D   YG+LI G   + K  +A +L  ++ +         YNS+IGGLC+ ++ 
Sbjct: 485 SKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKV 544

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           D+A       +++ L PD +T N ++      G ++  F+   +M +  F    D+    
Sbjct: 545 DQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFK--PDVYTCN 602

Query: 385 EFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
             L G  +E  +  AL +F  L  KG    V  YN ++ +L + G+ + A  L  +M   
Sbjct: 603 ILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAK 662

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            L  +  ++ + I    ++G I EA E   K++E   V        L KG          
Sbjct: 663 KLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHDQNLK--LGKG---------- 710

Query: 502 MMLVRDCLGNVASGPTEFK---YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
               ++ L +  S   +FK   Y+  I  +C   + +  + +  E+T+EG   N+     
Sbjct: 711 ----QNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKDAMHLFVEVTKEGVALNKYTYLN 766

Query: 559 IISGMCK 565
           ++ G+ K
Sbjct: 767 LMEGLIK 773


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 199/439 (45%), Gaps = 27/439 (6%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+I E L + +KM     +P+V  Y  +I  L    N  A +R+   M++   + DV+ 
Sbjct: 139 EGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVI 198

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y ++I  LCK  +V     LF +M   GI  D   Y  L+  L    +      LL  +V
Sbjct: 199 YTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMV 258

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +S    D+ I+++++  LC+  +  +A+++ ++ +Q  + PD  T   L+        MD
Sbjct: 259 NSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMD 318

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNI 417
              K+   M +  F  A D+  +   + G  K  +I  A+ +FEE+  K +      YN 
Sbjct: 319 EAVKVFDMMVRKGF--APDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNT 376

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI-----QCHVESGDILEACECHNK 472
           LM  L  +G ++ A+ LF +M       + +++SI +      CH+E    L       K
Sbjct: 377 LMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALL------K 430

Query: 473 IIEMSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS---GPTEFKYALTILHV 528
            IE S + P +  YN +  G+C+ GE++AA    RD   N++S    P+ + Y + I  +
Sbjct: 431 AIEASNLNPDIQVYNIIIDGMCRAGELEAA----RDLFSNLSSKGLHPSVWTYNIMIHGL 486

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C+ G   +  ++  EM    C P+    + I  G  ++     A ++   +  R    + 
Sbjct: 487 CKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADV 546

Query: 589 NTIVYDEILIEHMKKKTAD 607
           +T     +L+E +     D
Sbjct: 547 STTT---LLVEMLSDDGLD 562



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 196/405 (48%), Gaps = 16/405 (3%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+     +L K+ +   +PD   +T +IR L  E  +   L ++++M  +  + +V+ Y 
Sbjct: 106 RVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYG 165

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TLI GLCK G       L R M++     D  IY  +I+ L  + +V +A +L   +V  
Sbjct: 166 TLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQ 225

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD---FSTVNPLLVCCAEMGRM 359
           G   D+  Y S++  LC + ++     L    V   + PD   FSTV   L  C E G++
Sbjct: 226 GISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDAL--CKE-GKV 282

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYN 416
               +++  M  ++  V  D+  +   + G   +  +  A+ VF+ +  KG++  V  Y 
Sbjct: 283 TEAHEIVDMM--IQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYT 340

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKII 474
            L+    +I ++ KA+YLF +M       ++ +++  +   CHV  G + +A    ++++
Sbjct: 341 TLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHV--GRLQDAIALFHEMV 398

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
              Q+P +  Y+ L   LCK   ++ AM L++  +      P    Y + I  +CR+GE 
Sbjct: 399 ARGQMPDLVTYSILLDSLCKNCHLEEAMALLK-AIEASNLNPDIQVYNIIIDGMCRAGEL 457

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           E   ++ + ++ +G  P+    + +I G+CK G L EA K+F  +
Sbjct: 458 EAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEM 502



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 113/458 (24%), Positives = 194/458 (42%), Gaps = 19/458 (4%)

Query: 141 WAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ---GRIAEM------LEIL 191
           ++  Q  +      +N L   LS  N        P ++D       IA+M      L + 
Sbjct: 20  FSSSQNNFHSKSLHFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLS 79

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
            +M      P+V+    +I        +     V  ++ K   + D   + TLI GLC  
Sbjct: 80  TQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVE 139

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           G++     LF +M + G   +   YG LI GL   G    A  LL+ +     + D+ IY
Sbjct: 140 GKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIY 199

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
            SII  LC+ +Q  +A+ LF   V   ++PD  T   L+     +    +   LL QM  
Sbjct: 200 TSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVN 259

Query: 372 LKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEV 428
            K  +  D+  F   +  + KE ++  A ++ + +  +G    V  Y  LM       E+
Sbjct: 260 SK--ILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEM 317

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
            +A+ +F  M       + +S++  I  + +   I +A     ++     +P    YN L
Sbjct: 318 DEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTL 377

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
             GLC +G +  A+ L  +    VA G  P    Y++ +  +C++   E+ + +L  +  
Sbjct: 378 MHGLCHVGRLQDAIALFHEM---VARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEA 434

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
               P+  + + II GMC+ G LE AR +F+NL  + L
Sbjct: 435 SNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGL 472



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 117/262 (44%), Gaps = 4/262 (1%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD    Q  + E +++ + M R    PDV +YT +I        +D  + ++EEM +  
Sbjct: 307 LMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKE 366

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
              D   Y TL+ GLC  GR+     LF EM   G + D   Y +L++ L     + +A 
Sbjct: 367 WIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAM 426

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            LLK +  S    D+ +YN II G+CR  + + A  LF       L P   T N ++   
Sbjct: 427 ALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGL 486

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS-V 412
            + G ++   KL  +M+    S              +    + A+ + EE+  +G+S+ V
Sbjct: 487 CKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADV 546

Query: 413 PIYNILMGALLEIGEVKKALYL 434
               +L+  L + G  + + +L
Sbjct: 547 STTTLLVEMLSDDGLDQSSCFL 568


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 127/522 (24%), Positives = 221/522 (42%), Gaps = 53/522 (10%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE 176
           ++P +V  +++   NP L  +FF WA   K ++  + S + +   L   N      Q  E
Sbjct: 57  LSPKIVTSIIQNPPNPQLGFRFFIWASNFKRFRA-WESCDLITDLLINQNGLELYCQTLE 115

Query: 177 LMDS-------------------QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER 217
            + +                    G   + +E    MR   C PDV+ Y  ++ VL  + 
Sbjct: 116 ALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKN 175

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
            L   L V+  M K     +V  +  LI GLCK G V     LF EM + GIL D   Y 
Sbjct: 176 FLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYC 235

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           V+I GL    +V  A  L   + DSG   D    N+++ G C + + D+A+ L  +  +D
Sbjct: 236 VVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKD 295

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIM 395
               D    + L+       R ++   L  +M  ++ +V  D+  +   + G  E  ++ 
Sbjct: 296 GYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKM--IEDNVKPDVYLYTIMMKGLAEAGKVR 353

Query: 396 MALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEV-------NS 447
            AL++  E+   G     + YN+L+    ++G       L  + R L LE+       N 
Sbjct: 354 DALELLNEMTESGVVPDTVCYNVLIKGFCDMG-------LLSEARSLQLEISRHDCFPNV 406

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR- 506
            ++SI I     +G   +A E  N++ ++   PS   +N L  GLCK G+++ A +L   
Sbjct: 407 KTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYK 466

Query: 507 -------DCLGNVASGPTEFKYALT----ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
                       ++ GP+    + +    +  +C SG   K   +L ++   G  P    
Sbjct: 467 MEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYT 526

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            + +++G CK G    A K+F  ++ + L    +T+ Y  ++
Sbjct: 527 YNILVNGFCKLGNFNGAYKLFREMQFKGL--SPDTVTYGTLI 566



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 181/422 (42%), Gaps = 26/422 (6%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E   +L    ++    DV  Y+ +IR L   +  +    ++ +M +D V+ DV  Y 
Sbjct: 281 RVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYT 340

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++ GL + G+V    EL  EM E+G++ D   Y VLI+G    G + +A  L  ++   
Sbjct: 341 IMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRH 400

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
               ++  Y+ +I G+CR      A ++F    +    P   T N L+    + G+++  
Sbjct: 401 DCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKA 460

Query: 363 FKLLAQMEK-------LKFSV-------AADLEKFFE-----FLVGKEERIMMALDVFEE 403
             L  +ME        L+ S        +A L+K  E      L+ K  RI+M L    +
Sbjct: 461 HLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGD 520

Query: 404 LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
             G     +  YNIL+    ++G    A  LF +M+   L  +++++   I   +     
Sbjct: 521 APG-----IYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQRE 575

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
            +A +  +++ +    P  A Y  +   +C+  E+  A  L    L N+ S   E   A 
Sbjct: 576 EDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLRNIRSQEDEAIKA- 634

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I       E EK +  L EM  +    +    +  + G+C+   + EA K+F  L E K
Sbjct: 635 -IEGYFEKQEVEKAVRGLLEMDFKLNDFDLGPYAIWLIGLCQTRRVGEALKIFLILEEYK 693

Query: 584 LL 585
           ++
Sbjct: 694 VV 695



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 83/202 (41%), Gaps = 5/202 (2%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           N  +Y+ L   + RN L R A ++   M+  G     +     +   LCK        ++
Sbjct: 405 NVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVT-FNSLIDGLCKTGQLEKAHLL 463

Query: 211 RV-LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
              +   RN    LR+ +     L  A +     ++  LC  G + + + +  ++ ++G 
Sbjct: 464 FYKMEIGRNPSLFLRLSQGPSHVLDSASLQK---MVEQLCDSGLIHKAYRILMQLADSGD 520

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
                 Y +L+ G    G    A  L +++   G   D   Y ++I GL R ++ + AYK
Sbjct: 521 APGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYK 580

Query: 330 LFEVTVQDDLAPDFSTVNPLLV 351
           +F+   ++   PD +    ++ 
Sbjct: 581 VFDQMEKNGCTPDAAVYRTMMT 602


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 122/504 (24%), Positives = 212/504 (42%), Gaps = 21/504 (4%)

Query: 102 QWGPQVVTELSK-LRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAY 160
            WGP V   LS  +     DLV  VL+   +   A  +F W  ++        +Y++L  
Sbjct: 77  NWGPDVENALSLFVESPKTDLVIGVLRRAKDVNQAISYFRWTERKTDQALCPEAYDSLLL 136

Query: 161 CLSRNNLFRAADQVPELMDSQG-------------------RIAEMLEILEKMRRNLCKP 201
            +++N  F   +Q+   M   G                   ++ E  ++++ MR+   +P
Sbjct: 137 VMAKNVKFDYFEQILGEMSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRP 196

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
              AYT +I  L++ +  D  L ++ +M++   E  V  + T+I    + GR+     L 
Sbjct: 197 AFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLL 256

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            EMK N +  D  +Y V I+     GKV  A     ++   G   D   Y S+IG LC+ 
Sbjct: 257 DEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKG 316

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            + D+A ++FE   Q+   P     N +++     G+ D  + LL + +      +    
Sbjct: 317 NRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAY 376

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
                 +GK+ R+  AL  FEE+K     ++  YN+L+  L + GEV+ A  +   M+  
Sbjct: 377 NCILTCLGKKGRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEA 436

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            L  N ++ +I I    ++  + EAC     +      P    +  L  GL K G +D A
Sbjct: 437 GLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDA 496

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
             L    L +    P    Y   I    + G  E   ++  EM   GC P+  + +A + 
Sbjct: 497 YRLYEQML-DSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMD 555

Query: 562 GMCKHGTLEEARKVFTNLRERKLL 585
            + K G   + R +F  ++ R  +
Sbjct: 556 CVFKAGETGKGRALFEEIKSRGFI 579



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 126/505 (24%), Positives = 217/505 (42%), Gaps = 30/505 (5%)

Query: 114 LRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQ 173
           L  V  D   +  KV+    +A KFFH   K  G   +  +Y ++   L + N    A +
Sbjct: 270 LYNVCIDCFGKAGKVD----MAWKFFHEI-KSHGLLPDDVTYTSMIGVLCKGNRLDEAVE 324

Query: 174 VPELMD-------------------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
           + E M+                   S G+  E   +LE+ +   C P V AY  ++  L 
Sbjct: 325 IFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLG 384

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
            +  L   LR +EEMKKD    ++  Y  LI  LCK G V    ++   MKE G+  +  
Sbjct: 385 KKGRLGEALRTFEEMKKD-AAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVM 443

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
              ++I+ L    K+ +AC + + +       D   + S+I GL +  + D AY+L+E  
Sbjct: 444 TVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQM 503

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI 394
           +  D  P+      L+    + GR ++  K+  +M     S    L   +   V K    
Sbjct: 504 LDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGET 563

Query: 395 MMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
                +FEE+K +G+   V  Y+IL+  L++ G  ++   LF  M+     +++ +++  
Sbjct: 564 GKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTF 623

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
           I    +SG + +A +   ++    + P+V  Y  +  GL KI  +D A ML  +   N  
Sbjct: 624 IDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGL 683

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
                  Y+  I    + G  ++   ++ E+ Q+G  PN    + ++  + K   + EA 
Sbjct: 684 ELNVVI-YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEAL 742

Query: 574 KVFTNLRERKLLTEANTIVYDEILI 598
             F N++  K     N I Y  ILI
Sbjct: 743 VCFQNMKNLK--GTPNHITY-SILI 764



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 178/402 (44%), Gaps = 39/402 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR  +  +I ++M    C PD+    A +  +           ++EE+K      DVM+Y
Sbjct: 526 GRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSY 585

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GL K G     +ELF  MKE G ++D   Y   I+G    GKV KA  LL+++  
Sbjct: 586 SILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKT 645

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G +  +  Y S+I GL ++ + D+AY LFE    + L  +    + L+    ++GR+D 
Sbjct: 646 KGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDE 705

Query: 362 FFKLLAQ-MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKG-KGYSSVPIYNILM 419
            + ++ + M+K             + LV K E I  AL  F+ +K  KG  +   Y+IL+
Sbjct: 706 AYLIMEELMQKGLTPNVYTWNCLLDALV-KAEEINEALVCFQNMKNLKGTPNHITYSILI 764

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L  + +  KA   + +M+   L+ N+++++  I    ++G+I EA     +      V
Sbjct: 765 NGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGV 824

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P  A+YN + +GL                                  +  R+ EA KI E
Sbjct: 825 PDSASYNAIIEGLS---------------------------------YSRRAMEAYKIFE 851

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              E   +GC  +   C A++  + K   LE+A  V   LRE
Sbjct: 852 ---ETRMKGCNIHTKTCIALLDALQKDECLEQAAIVGAVLRE 890


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 198/426 (46%), Gaps = 27/426 (6%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  + +++L++MR   C P+++ Y  ++  L  ER LD   ++ EEM       DV+ Y 
Sbjct: 127 RTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYN 186

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           + I GLCK  RV    +    M    +  D   Y  +I GL   G +  A  +L  + + 
Sbjct: 187 SFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNR 243

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D+  Y+S+I G C+  + ++A  L +  ++    P+    N LL     +G +   
Sbjct: 244 GCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKA 303

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-------YS--- 410
             +L +ME+  F+   D+  +   + G  K ER+  A  VF+ +  +G       YS   
Sbjct: 304 EDMLVEMERRGFT--PDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLI 361

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL-EVNSLSFSIAIQCHVESGDILEACE 468
             + +Y +L+  L + G   +A  LF K+    + E +   +++ +  H +   I +A +
Sbjct: 362 VDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQ 421

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEI-DAAMMLVRDCLGNVASG--PTEFKYALTI 525
            H +++E     +V  +N L  GLC    + DA  ML    L  V  G  P    Y   +
Sbjct: 422 IHKQMLE-KNCCNVVTWNILVHGLCVDDRLSDAETML----LTMVDEGFIPDFVTYGTLV 476

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
             +C+ G++   +E+  E  + GC P+ V  SA+I+G+      EEA  +FT L ER+ +
Sbjct: 477 DAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWV 536

Query: 586 TEANTI 591
            +  T+
Sbjct: 537 PDDKTL 542



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/426 (23%), Positives = 189/426 (44%), Gaps = 28/426 (6%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +VF Y  ++  L  E   D    V++EM     + D   +  L+ GLC+  ++ +  +L 
Sbjct: 6   NVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLL 65

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             MKE G + D AIY  LI G       G+A   L ++V +     +  Y +I+ GLC+ 
Sbjct: 66  GRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKA 125

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
           ++   A KL +       +P+  T N ++    E  ++D   K+L +M    +    D+ 
Sbjct: 126 ERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGY--FPDVV 183

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPI------YNILMGALLEIGEVKKALYLF 435
            +  F+ G     +   D  +E + K  + +P+      Y  ++  L + G++  A  + 
Sbjct: 184 TYNSFIKG-----LCKCDRVDEAR-KFLARMPVTPDVVSYTTVINGLCKSGDLDSASRML 237

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             M       + +++S  I    + G++  A    + ++++   P++ AYN L   L ++
Sbjct: 238 DHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRL 297

Query: 496 GEIDAAM-MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE- 553
           G I  A  MLV   +      P    Y   I  +C++   +K   V + M + GC PN  
Sbjct: 298 GHIGKAEDMLVE--MERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNAS 355

Query: 554 ---------VICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
                    ++ + ++ G+CK G  +EA  +F+ + + K + E +   Y+ +L  H K++
Sbjct: 356 SYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEK-ICEPDVFFYNVMLDSHCKRR 414

Query: 605 TADLVL 610
             D  L
Sbjct: 415 QIDKAL 420



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 2/169 (1%)

Query: 182 GRIAEMLEILEK-MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           GR  E   +  K +   +C+PDVF Y  M+      R +D  L++ ++M +     +V+ 
Sbjct: 378 GRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNC-CNVVT 436

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  L+ GLC   R+     +   M + G + D   YG L++ +   GK   A +L ++ V
Sbjct: 437 WNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAV 496

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
             G   D+  Y+++I GL      ++AY LF   V+    PD  T+  L
Sbjct: 497 KGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGLL 545


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 187/408 (45%), Gaps = 9/408 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK-DLVEADVMAY 241
           ++ + L   EKMR     P+   Y  ++  L   R       V +EM+    V  D++ Y
Sbjct: 22  QLKQALACFEKMR-EFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTY 80

Query: 242 VTLIMGLCKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
            T+I G CK G + R  E+ REM   +GI  D   Y  +++GL  +GK+ +AC++++++ 
Sbjct: 81  STVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMK 140

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
             G   D   ++++I G C  ++ D+A KL+ E+       PD  T   L+    + G +
Sbjct: 141 LKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNL 200

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYN 416
           +   K+L  ME  K     ++  +   L G  K   +  ALD+F  +  KG   +V  Y 
Sbjct: 201 EKAMKMLGVMEGRK--CVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYT 258

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  L    +V  A  L  +M       +++S++  +  +   G I EA +   ++   
Sbjct: 259 TLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATK 318

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
           S +P    Y CL +G C    ++ A  L+ +        P    Y++ +    R+    +
Sbjct: 319 SCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVE 378

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
             E + EM      PN V  S++I G+CK G ++ A +V  N+  +++
Sbjct: 379 AAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRV 426



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 168/349 (48%), Gaps = 10/349 (2%)

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ +  +I G CK  ++ +    F +M+E  +  +   Y V++ GL       KA ++LK
Sbjct: 7   VVTWTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSKAYEVLK 65

Query: 298 DLVDSGYRA-DLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAE 355
           ++ D    A DL  Y+++I G C+  + D+A ++  E+  +D +APD  T   ++     
Sbjct: 66  EMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCR 125

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL--KGKGYSS 411
            G+MD   +++ +M KLK  V  D   F   + G     ++  AL +++E+         
Sbjct: 126 DGKMDRACEMVREM-KLK-GVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPD 183

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           V  Y  L+    + G ++KA+ + G M G     N +++S  +    ++GD+ +A +   
Sbjct: 184 VVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFR 243

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           ++     VP+V  Y  L  GLC   ++DAA +L+ D +      P    Y   +   CR 
Sbjct: 244 RMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLM-DEMTATCCPPDTVSYNALLDGYCRL 302

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           G  E+  ++  EM  + C P+ +  + ++ G C    LEEAR +  N++
Sbjct: 303 GRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMK 351



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 175/389 (44%), Gaps = 10/389 (2%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           KPDV  YTA+I       NL+  +++   M+      +V+ Y +L+ GLCK G + +  +
Sbjct: 181 KPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALD 240

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           LFR M   G + +   Y  LI GL    KV  A  L+ ++  +    D   YN+++ G C
Sbjct: 241 LFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYC 300

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           R+ + ++A +LF+        PD  T   L+       R++    LL  M K    +  D
Sbjct: 301 RLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENM-KTAAGIDPD 359

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
           +  +   + G  + +R + A +  +E+  +  + +   Y+ L+  L + G V  A+ +  
Sbjct: 360 VVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLK 419

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            M    +E +  +F+  I      GD+ EA +    +      P +  Y  L +G  + G
Sbjct: 420 NMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTG 479

Query: 497 EIDAA------MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
            ++ A      M        + A+   E  ++  I  +C++ E +K + V+ E+    C 
Sbjct: 480 RMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECE 539

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNL 579
           P E  C AI+ G+ + G  EEA K+  ++
Sbjct: 540 PAEEDCLAIVDGLLRAGRTEEAGKLINSI 568



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 109/234 (46%), Gaps = 8/234 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMA 240
           GRI E  ++ ++M    C PD   YT ++R       L+    + E MK    ++ DV+ 
Sbjct: 303 GRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVT 362

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  ++ G  +  R V   E  +EM    +  +   Y  LI+GL   G+V  A ++LK++V
Sbjct: 363 YSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMV 422

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +      +G +NS+IG LCR+   D+A+KL        L P   T   LL   +  GRM+
Sbjct: 423 NKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRME 482

Query: 361 NFFKLLAQMEKLKFSVAADL----EKFFEFLV---GKEERIMMALDVFEELKGK 407
             ++L   M K     ++      E+ F  L+    K   I  A+ V EEL+ +
Sbjct: 483 IAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSR 536


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 123/541 (22%), Positives = 223/541 (41%), Gaps = 62/541 (11%)

Query: 68  KTQSPPSDPKTFQLQRHL---SPIARFITDAFRK--NQFQWGPQVVTELSKLR-RVTPDL 121
           +  +P  +   F   R +    P  R + + F +    F+WG      +  L+ +V   L
Sbjct: 34  RVSTPSPEASNFSFNRKVLRRDPSVRTLDERFIRILKIFKWGSDAEKAIEVLKLKVDHRL 93

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNL----FRAA------ 171
           V +VL ++       +FF WAGK++ ++H+  +Y AL  CL  + L    +R        
Sbjct: 94  VHQVLDIDVEIRAKIQFFKWAGKRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRS 153

Query: 172 ---------DQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
                     ++ +++     + + L +  +++   C P    Y  +I +L  E + +  
Sbjct: 154 PCSVGPAEWSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKI 213

Query: 223 LRVWEEM-KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
             ++ E+  +     D + Y  LI    K  R      LF EMKENG+     IY  ++ 
Sbjct: 214 HELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILA 273

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
                 KV  A  L++++   G    +  Y  +I GL +V + D AY LF   ++D   P
Sbjct: 274 MYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKP 333

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVF 401
           D   +N L+      GR+++  KL  +M+ L+ +                          
Sbjct: 334 DVVLINNLINILGRAGRLEDALKLFGKMDSLQCA-------------------------- 367

Query: 402 EELKGKGYSSVPIYNILMGALLEI-GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
                    +V  YN ++ A+ E      +A   F KM+   +  +S +++I I    ++
Sbjct: 368 --------PNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKT 419

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
             + +A     ++ E    P  AAY  L   L +    +AA  L ++   N         
Sbjct: 420 NRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARV- 478

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           YA+ I H    G     +++  EM + GC P+    +A++SGM + G ++EA  +  N+R
Sbjct: 479 YAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMR 538

Query: 581 E 581
           E
Sbjct: 539 E 539



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 137/285 (48%), Gaps = 8/285 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ +   +   M ++ CKPDV     +I +L     L+  L+++ +M       +V+ Y
Sbjct: 314 GRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTY 373

Query: 242 VTLIMGLCKGGRVVRGHEL-FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
            T+I  + +         L F +MK NGI      Y +LI+G     +V KA  LL+++ 
Sbjct: 374 NTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMD 433

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV-CCAEMGRM 359
           + G+      Y S+I  L R K+++ A +LF+  ++++     + V  +++      GR+
Sbjct: 434 EKGFPPCPAAYCSLIDSLGRAKRYEAANELFQ-ELKENCGRSSARVYAVMIKHFGNCGRL 492

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYN 416
            +   L  +M+KL    + D+  +   + G     M+  A  +   ++  G +  +  +N
Sbjct: 493 SDAVDLFCEMKKL--GCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHN 550

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           I++  L + G  K+A+ +F KM+   +  +++S++  + C   +G
Sbjct: 551 IILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAG 595



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 108/247 (43%), Gaps = 2/247 (0%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           +  + +S+   +E     EKM+ N   P  F Y  +I        ++  L + EEM +  
Sbjct: 377 IKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKG 436

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
                 AY +LI  L +  R    +ELF+E+KEN       +Y V+I+     G++  A 
Sbjct: 437 FPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAV 496

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           DL  ++   G   D+  YN+++ G+ R    D+A+ L     ++   PD  + N +L   
Sbjct: 497 DLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGL 556

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG--YSS 411
           A+ G      ++  +M++ +    A         + +     MA  +  E+K KG  Y S
Sbjct: 557 AKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDS 616

Query: 412 VPIYNIL 418
           +   +IL
Sbjct: 617 ITYSSIL 623



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 93/198 (46%), Gaps = 19/198 (9%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-------------------GRIA 185
           +KG+    A+Y +L   L R   + AA+++ + +                      GR++
Sbjct: 434 EKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLS 493

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + +++  +M++  C PDV+ Y A++  +     +D    +   M+++    D+ ++  ++
Sbjct: 494 DAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIIL 553

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GL K G   R  E+F +MKE+ I+ D   Y  ++  L   G    A  L++++   G+ 
Sbjct: 554 NGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFE 613

Query: 306 ADLGIYNSIIGGLCRVKQ 323
            D   Y+SI+  + +V +
Sbjct: 614 YDSITYSSILEAVGKVDE 631


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 123/508 (24%), Positives = 217/508 (42%), Gaps = 57/508 (11%)

Query: 181 QGRIAEMLEILEKMRRNLCK--PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           Q   AE  E++  +R    +  PD   ++ +I  L     +D    V+++M       +V
Sbjct: 336 QSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNV 395

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + Y  L+ GLCK  ++ R H +   M + G+  D   Y VL++      +V +A +LL  
Sbjct: 396 ITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHG 455

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMG 357
           +   G   ++  +NSII GLC+  +  +A+++F ++ ++  L PD  T   L+      G
Sbjct: 456 MASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTG 515

Query: 358 RMDNFFKLLAQM-----------------------------EKLKFSVAADLEKFFEFLV 388
           R      LL  M                               L+  +  D   F   + 
Sbjct: 516 RAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIA 575

Query: 389 G--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
           G  K      A  +FEE+  K     V  +  L+  L + G+V+ A  +   M  L +  
Sbjct: 576 GACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPP 635

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N ++++  +    +SG I EAC+   +++    VP    Y  L   LC+    D A+ LV
Sbjct: 636 NVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLV 695

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
            + L +    P    Y + +  + +SG+ E+ I VL EM  +G  P+ V  + +I  +CK
Sbjct: 696 SE-LKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCK 754

Query: 566 HGTLEEARKVFTNLRER-KLLTEANTIVY-------------DEI--LIEHMKKKTADLV 609
            G LEEAR++  ++  R       N + Y             DE   LI+ M +K+ D++
Sbjct: 755 AGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVL 814

Query: 610 LSGLKFFGL-----ESKLKAKGCKLLSS 632
            + + +        +  + A+ C+L+ S
Sbjct: 815 PNIITYNSFLDGLCKQSMMAEACELMRS 842



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 118/494 (23%), Positives = 210/494 (42%), Gaps = 65/494 (13%)

Query: 149 KHNFASYNALAYCLSRNNLFRA--ADQVPELMDSQ------------------GRIAEML 188
           KH     + + YC   + LFR   A Q   L+D+                   G ++  L
Sbjct: 494 KHGLVP-DKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRAL 552

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++  +M      PD   +  +I       N +    ++EEM    ++ DVM +  LI GL
Sbjct: 553 QVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGL 612

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           CK G+V    ++   M   G+  +   Y  L+ GL   G++ +AC  L+++V SG   D 
Sbjct: 613 CKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDS 672

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFE------------------------------VTVQDD 338
             Y S++  LCR  + D A +L                                +TV ++
Sbjct: 673 ITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEE 732

Query: 339 LA-----PDFSTVNPLLVCCAEMGRMDNFFKLLAQM-EKLKFSVAADLEKFFEFLVG--K 390
           +      PD  T N L+    + G ++   +L   M  ++      ++  +   + G  K
Sbjct: 733 MVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCK 792

Query: 391 EERIMMALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEV-- 445
             RI  A ++ +E+  K    +P    YN  +  L +   + +A  L   +R  +L V  
Sbjct: 793 VGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSP 852

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           ++++FS  I    + G   EAC   + +I    VP+V  YN L  GLCK  +++ A  ++
Sbjct: 853 DTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMI 912

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
              +    + P    Y++ +   C++   ++ +E+L+ M   GC PN V  ++II G+CK
Sbjct: 913 ESMVDKGVT-PDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCK 971

Query: 566 HGTLEEARKVFTNL 579
                EA ++F ++
Sbjct: 972 SDQSGEAFQMFDDM 985



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 126/574 (21%), Positives = 230/574 (40%), Gaps = 91/574 (15%)

Query: 90  RFITDAFRKNQFQWGPQVVTELSKLR-RVTPDLVAEVL-KVENNPTLASKFFHWAGKQKG 147
           R I++A      + G  VV  L   + R+ P + A +L +++ N  L ++F+ WA    G
Sbjct: 49  RSISEALE--SLRPGQSVVAALRGCKGRLHPSVAAAILAQLDGNAELGTQFYDWAAALPG 106

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYT 207
           +KH   S+N                +   L+   G  A+ +++        C+P+ F Y+
Sbjct: 107 FKHTIFSFN----------------KYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYS 150

Query: 208 AMIRVL-----------------------AAERN--LDACLRVWE----------EMKKD 232
            ++R                          A+ N  L +  R  E          EM +D
Sbjct: 151 TLLRATYKAGGDVERTLGFFRRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARD 210

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            V   ++ Y T+I GLCK   +  G ELF E+ E G   D   Y  LI+ L   G + +A
Sbjct: 211 GVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEA 270

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD--DLAPDFSTVNPLL 350
             L  D+       ++  Y+ +I GLC+V + D+A +L +   +   D+ P+  T N  L
Sbjct: 271 RRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFL 330

Query: 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG 408
               +        +L+  +      V+ D   F   + G  K  +I  A  VF+++   G
Sbjct: 331 DGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGG 390

Query: 409 Y-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
           Y  +V  YN L+  L +  ++++A  +   M    +  + +++S+ +    ++  + EA 
Sbjct: 391 YVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEAL 450

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-------------------- 507
           E  + +      P+V  +N +  GLCK      A  +  D                    
Sbjct: 451 ELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDG 510

Query: 508 -----------CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
                       L +    P  + +   I  + + G+  + ++V N M +    P++V  
Sbjct: 511 LFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTF 570

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           + +I+G CK G  E+A  +F  +  + L  +  T
Sbjct: 571 NILIAGACKAGNFEQASALFEEMVAKNLQPDVMT 604



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 111/480 (23%), Positives = 202/480 (42%), Gaps = 52/480 (10%)

Query: 147  GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
            G   N  +YNAL + L ++                GRI E  + LE+M  + C PD   Y
Sbjct: 632  GVPPNVVTYNALVHGLCKS----------------GRIEEACQFLEEMVSSGCVPDSITY 675

Query: 207  TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +++  L      D  L++  E+K    + D + Y  L+ GL K G+  +   +  EM  
Sbjct: 676  GSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVG 735

Query: 267  NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA---DLGIYNSIIGGLCRVKQ 323
             G   D   Y  LI+ L   G + +A  L  D+     R    ++  Y+ +I GLC+V +
Sbjct: 736  KGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGR 795

Query: 324  FDKAYKLFEVTVQD--DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
             D+A +L +  ++   D+ P+  T N  L    +   M    +L+  +      V+ D  
Sbjct: 796  IDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTV 855

Query: 382  KFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKM 438
             F   + G  K  +   A +VF+++   GY  +V  YN+LM  L +  ++++A  +   M
Sbjct: 856  TFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESM 915

Query: 439  RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
                +  + +++S+ +    ++  + EA E  + +      P+V  +N +  GLCK  + 
Sbjct: 916  VDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQS 975

Query: 499  DAAMMLVRDCLGNVASGPTEFKYALTILHVCRS---GEAEKIIE---------------- 539
              A  +  D        P +  Y   I  + R+   G+AE +++                
Sbjct: 976  GEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCING 1035

Query: 540  ---------VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
                      L+ M +    P++V  + +I+G CK G  E+A  +F  +  + L  +  T
Sbjct: 1036 LSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMT 1095



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 184/414 (44%), Gaps = 35/414 (8%)

Query: 181  QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA---D 237
             G+  + + +LE+M      PDV  Y  +I  L    +L+   R+  +M   +      +
Sbjct: 720  SGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPN 779

Query: 238  VMAYVTLIMGLCKGGRVVRGHELFREM--KENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            V+ Y  LI GLCK GR+    EL +EM  K   +L +   Y   ++GL  +  + +AC+L
Sbjct: 780  VVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACEL 839

Query: 296  LKDLVDSGYRA--DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            ++ L D   R   D   ++++I GLC+  Q D+A  +F+  +     P+  T N L+   
Sbjct: 840  MRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGL 899

Query: 354  AEMGRMDNFFKLLAQM-------EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKG 406
             +  +M+    ++  M       + + +SV  D          K   +  AL++   +  
Sbjct: 900  CKTDKMERAHAMIESMVDKGVTPDVITYSVLVDA-------FCKASHVDEALELLHGMAS 952

Query: 407  KGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR-GLNLEVNSLSFSIAIQCHVESGDIL 464
            +G + +V  +N ++  L +  +  +A  +F  M     L  + +++   I     +G   
Sbjct: 953  RGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAG 1012

Query: 465  EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM--MLVRDCLGNVASGPTEFKYA 522
            +A      +++    P   A+NC   GL K+G++  A+  ML  + +      P +  + 
Sbjct: 1013 QA----EVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELELV------PDKVTFN 1062

Query: 523  LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
            + I   C++G  E+   +  EM  +   P+ +   A+I G+CK G +E    + 
Sbjct: 1063 ILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEATWDIM 1116



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 96/189 (50%), Gaps = 4/189 (2%)

Query: 412 VPIYNILMGALLEIGEVKKALYLF-GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           V  YNI++ +L   GE  +AL +F G+M    +    ++++  I    +S ++    E  
Sbjct: 180 VADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELF 239

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
            +++E    P V  YN L   LCK G+++ A  L  D + + +  P    Y++ I  +C+
Sbjct: 240 EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGD-MSSRSCVPNVVTYSVLINGLCK 298

Query: 531 SGEAEKIIEVLNEMTQEGCP--PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
            G  ++  E++ EMT++ C   PN +  ++ + G+CK     EA ++  +LR+  L    
Sbjct: 299 VGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSP 358

Query: 589 NTIVYDEIL 597
           +T+ +  ++
Sbjct: 359 DTVTFSTLI 367



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 45/249 (18%)

Query: 147  GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
            GY  N  +YN L   L + +    A  + E M  +G                  PDV  Y
Sbjct: 884  GYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKG----------------VTPDVITY 927

Query: 207  TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK- 265
            + ++       ++D  L +   M       +V+ + ++I GLCK  +     ++F +M  
Sbjct: 928  SVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTL 987

Query: 266  ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA------------------- 306
            ++G+  D+  Y  LI+GL   G  G+A  LL  + D    A                   
Sbjct: 988  KHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALH 1047

Query: 307  ---------DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
                     D   +N +I G C+   F++A  LFE  V  +L PD  T   L+    + G
Sbjct: 1048 RMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAG 1107

Query: 358  RMDNFFKLL 366
            +++  + ++
Sbjct: 1108 QVEATWDIM 1116



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 22/171 (12%)

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           VA YN + + LC+ GE   A+ + R  +      PT   Y   I  +C+S E    +E+ 
Sbjct: 180 VADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELF 239

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY-------- 593
            E+ + G  P+ V  + +I  +CK G LEEAR++  ++  R  +   N + Y        
Sbjct: 240 EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCV--PNVVTYSVLINGLC 297

Query: 594 -----DEI--LIEHMKKKTADLVLSGLKFFGL-----ESKLKAKGCKLLSS 632
                DE   LI+ M +K+ D++ + + +        +  + A+ C+L+ S
Sbjct: 298 KVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS 348


>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 647

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 127/522 (24%), Positives = 229/522 (43%), Gaps = 31/522 (5%)

Query: 114 LRRVTPDLVAEVLK---VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRA 170
           L +++P  V+ +L+   ++  P +A +FF WAGKQK Y HN   Y +L   L+ N +  +
Sbjct: 103 LIKLSPSFVSFILRSTELQTKPDVAIRFFTWAGKQKKYTHNLECYVSLIDVLATNGVLDS 162

Query: 171 ADQV----------------PELMDSQGRIA---EMLEILEKMRRNLCKPDVFAYTAMIR 211
              V                  L+ S G +    E+L +  +M+ N  +P +F+Y  ++ 
Sbjct: 163 VKSVFSKFKEMGLIMTVYSSNSLIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVN 222

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
            L   + +++  RV+E M+   +  DV+ Y T+I G C+ G+  +  E  + M+   +  
Sbjct: 223 GLVNSKFIESAERVFEVMENGKIGPDVVTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAP 282

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           D+  Y  LI+    EG       L  ++ + G      +Y+ +IGGLC+  +  + Y +F
Sbjct: 283 DKITYMTLIQACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVF 342

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE 391
           E  +      + +    L+   A+ G M     L  +M+K                + K 
Sbjct: 343 ENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKS 402

Query: 392 ERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
            R+  AL+  E   GKG + +   Y+ L+  L + G V +A  +F +M       +S  +
Sbjct: 403 GRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCY 462

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +  I    + G I EA     ++       +V  Y  L  GL +    + A+ L  D + 
Sbjct: 463 NALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITGLFREHRNEEALTL-WDLMI 521

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
           +    PT   +      +C SG+  +  ++L+EM   G  P E     +I+ +CK G ++
Sbjct: 522 DKGITPTAAAFRALSTGLCLSGKVARACKILDEMAPMGVIP-ETAFDDMINILCKAGRIK 580

Query: 571 EARKVFTNL--RERKLLTEANTIVYDEILIEHMKKKTADLVL 610
           EA K+   +  R R++     T++ + +     K   ADL L
Sbjct: 581 EACKLADGIVDRGREIPGRVRTVLINAL----RKAGNADLAL 618



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 1/149 (0%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+I E L + ++M  + C   V+ YT +I  L  E   +  L +W+ M    +     A+
Sbjct: 473 GKIDEALALSKRMEVDGCDQTVYTYTILITGLFREHRNEEALTLWDLMIDKGITPTAAAF 532

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L  GLC  G+V R  ++  EM   G++ + A +  +I  L   G++ +AC L   +VD
Sbjct: 533 RALSTGLCLSGKVARACKILDEMAPMGVIPETA-FDDMINILCKAGRIKEACKLADGIVD 591

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
            G      +   +I  L +    D A KL
Sbjct: 592 RGREIPGRVRTVLINALRKAGNADLALKL 620


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 133/633 (21%), Positives = 248/633 (39%), Gaps = 107/633 (16%)

Query: 58  KWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWG---------PQVV 108
           KW P   P+  TQ PP    T     +  P ++ I+     +  Q           P   
Sbjct: 8   KWYPWTPPHTLTQPPP----TLSSAHNCKPFSKLISFTSTHHHDQQAVSPSFSTLSPSPT 63

Query: 109 TELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNN-- 166
           T+L +    TP  + + L+ +++         WA KQ  +  +   Y  +   L ++   
Sbjct: 64  TQLPQ--NFTPKQLRDALRRQSDEDSILDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSF 121

Query: 167 ---------------------------------LFRAADQVPELMDSQ------------ 181
                                            LF  A  V ++M+ +            
Sbjct: 122 GSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNF 181

Query: 182 -------GRIAEMLEIL-EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
                  G   +++EI+  +M     KPDV  +  +I+ L     +   + + EEM    
Sbjct: 182 LLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYG 241

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  D   + TL+ G  + G +     +  +M   G         VL+ G   EG++ +  
Sbjct: 242 LSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVL 301

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
             + ++ + G+R D   +NS++ GLCR+     A ++ +V +Q+   PD  T N L+   
Sbjct: 302 SFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGL 361

Query: 354 AEMGRMDNFFKLLAQMEKLKFS---------------------------------VAADL 380
            ++G ++   ++L QM    FS                                 +  D+
Sbjct: 362 CKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDV 421

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGK 437
             F   + G        +A+++FEE+K KG +     YN+L+ +L   G +++AL L  +
Sbjct: 422 CTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKE 481

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M       N ++++  I    ++  I EA E  +++       +V  YN L  GLCK   
Sbjct: 482 MESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRR 541

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           ++ A  L+   L      P +F Y   + + CR+G+ +K  +++  MT  GC P+ V   
Sbjct: 542 VEEAAQLMDQMLME-GLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYG 600

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            +I G+ K G +E A ++   ++ + ++    T
Sbjct: 601 TLILGLSKAGRVELASRLLRTVQLKGMVLAPQT 633



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 178/391 (45%), Gaps = 8/391 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GRI E+L  +++M     +PD F + +++  L    ++   L + + M ++  + D+  
Sbjct: 294 EGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFT 353

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI GLCK G V    E+  +M       +   Y  LI  L  E +V +A +L + L 
Sbjct: 354 YNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLT 413

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D+  +NS+I GLC       A +LFE        PD  T N L+      GR++
Sbjct: 414 SKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLE 473

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
               LL +ME      + ++  +   + G  K +RI  A ++F+E++ +G S +V  YN 
Sbjct: 474 EALSLLKEME--SSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNT 531

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L +   V++A  L  +M    L+ +  +++  +     +GDI +A +    +    
Sbjct: 532 LIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNG 591

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEK 536
             P    Y  L  GL K G ++ A  L+R   L  +   P  +   +  L   R     +
Sbjct: 592 CEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALF--REKRTSE 649

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            + +  EM ++G PP+ V    +  G+C  G
Sbjct: 650 AVRLFREMMEKGDPPDAVTYKVVFRGLCSGG 680



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 167/410 (40%), Gaps = 56/410 (13%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEM------------------ 187
           + +  N  +YN L   L + N    A ++  ++ S+G + ++                  
Sbjct: 380 RDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRL 439

Query: 188 -LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
            +E+ E+M+   C PD F Y  +I  L +   L+  L + +EM+      +V+ Y TLI 
Sbjct: 440 AMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLID 499

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           G CK  R+    E+F EM+  GI  +   Y  LI+GL    +V +A  L+  ++  G + 
Sbjct: 500 GFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKP 559

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D   YNS++   CR     KA  + +    +   PD  T   L++  ++ GR++      
Sbjct: 560 DKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVE------ 613

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEI 425
                                        +A  +   ++ KG    P  YN ++ AL   
Sbjct: 614 -----------------------------LASRLLRTVQLKGMVLAPQTYNPVIKALFRE 644

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD-ILEACECHNKIIEMSQVPSVAA 484
               +A+ LF +M       +++++ +  +     G  I EA +   ++ +   +P  ++
Sbjct: 645 KRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLPDFSS 704

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           +  L +GLC +   D  + LV   +       +E    +  L + +  +A
Sbjct: 705 FLMLAEGLCALSMEDTLIKLVNRVMKQANFSDSEVSMIMGFLKIRKFQDA 754


>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Brachypodium distachyon]
          Length = 904

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 122/529 (23%), Positives = 220/529 (41%), Gaps = 105/529 (19%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL-- 248
            E MR    +P+ F +T+++   A  R++   L   EEMK + +E  ++ Y  +I G   
Sbjct: 292 FENMRARGIEPNAFVFTSLVHAYAVARDMRGVLSCVEEMKAEGIELTIVTYSIIIAGFAK 351

Query: 249 ---------------------------------CKGGRVVRGHELFREMKENG------- 268
                                            C+ G + R  EL REM+E+G       
Sbjct: 352 INDAQSADNLFKEAKAKLGDLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDA 411

Query: 269 ------------------ILIDR----------AIYGVLIEGLVGEGKVGKACDLLKDLV 300
                             I+ +R            YG LI   +  GKV KA  + K++ 
Sbjct: 412 YHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEME 471

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + +   Y+ +I G   +  F  A+ +FE  ++  L PD +  N L+    +MG MD
Sbjct: 472 SYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMD 531

Query: 361 NFFKLLAQMEKLK--------------FSVAADLEKFFEFLVGKEERIMMALDVFEELKG 406
              ++L +M+K +              F+VA D+++              AL++ + ++ 
Sbjct: 532 RAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKR--------------ALNILDLMRR 577

Query: 407 KGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G + +V  YN L+  L++  +V++A+ +  KM    +  N  +++I ++ +  +GDI +
Sbjct: 578 SGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGK 637

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A E   KI E      V  Y  L +  CK G + +A+ + R+ +         F Y + I
Sbjct: 638 AFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTRE-MSTQKIARNTFVYNILI 696

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
               R G+  +  +++ +M ++G PPN    ++ I+  CK G ++ A+KV   + +  L 
Sbjct: 697 DGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADVGL- 755

Query: 586 TEANTIVYDEILIEHMKKKTADLVLSG---LKFFGLESKLKAKGCKLLS 631
            + N   Y  ++    K    D  L     +K  GL+    A  C + S
Sbjct: 756 -KPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLVTS 803



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 97/227 (42%), Gaps = 16/227 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G      +YNAL + L + N                ++   + +L KM      P+ 
Sbjct: 576 RRSGCAPTVMTYNALIHGLIKKN----------------QVERAVSVLNKMSIAGITPNE 619

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT ++R  AA  ++      + ++K+  ++ DV  Y TL+   CK GR+     + RE
Sbjct: 620 HTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTRE 679

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M    I  +  +Y +LI+G    G V +A DL+K + + G   ++  Y S I   C+   
Sbjct: 680 MSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGD 739

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
             +A K+ E      L P+  T   L+   A+    D   K   +M+
Sbjct: 740 MQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMK 786



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 114/263 (43%), Gaps = 5/263 (1%)

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
           RA   + E     G +   L IL+ MRR+ C P V  Y A+I  L  +  ++  + V  +
Sbjct: 550 RAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNK 609

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           M    +  +   Y  ++ G    G + +  E F ++KE G+ +D  IY  L+      G+
Sbjct: 610 MSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGR 669

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           +  A  + +++       +  +YN +I G  R     +A  L +   +D + P+  T   
Sbjct: 670 MQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTS 729

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM--MALDVFEELKG 406
            +  C + G M    K++ +M  +   +  +L+ +   + G  +  +   AL  FEE+K 
Sbjct: 730 YINACCKAGDMQRAQKVIEEMADV--GLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKL 787

Query: 407 KGYS-SVPIYNILMGALLEIGEV 428
            G       Y+ L+ +LL    V
Sbjct: 788 AGLKPDEAAYHCLVTSLLSRATV 810



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 121/288 (42%), Gaps = 5/288 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +   + ILEKM++   +P   A+  +I   A   ++   L + + M++      VM Y
Sbjct: 528 GNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTY 587

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GL K  +V R   +  +M   GI  +   Y +++ G    G +GKA +    + +
Sbjct: 588 NALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKE 647

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + D+ IY +++   C+  +   A  +        +A +    N L+   A  G +  
Sbjct: 648 GGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWE 707

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
              L+ QM+  +  V  ++  +  ++    K   +  A  V EE+   G   ++  Y  L
Sbjct: 708 AADLMKQMK--EDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTL 765

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           +    +     +AL  F +M+   L+ +  ++   +   +    ++E 
Sbjct: 766 IKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLVTSLLSRATVMEG 813



 Score = 38.9 bits (89), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +    +++E+M     KP++  YT +I+  A     D  L+ +EEMK   ++ D  AY
Sbjct: 738 GDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAY 797

Query: 242 VTLIMGLCKGGRVVRGH------ELFREMKENGILID 272
             L+  L     V+ G        + REM EN + +D
Sbjct: 798 HCLVTSLLSRATVMEGSTYTGILSICREMFENDLTVD 834


>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 136/544 (25%), Positives = 248/544 (45%), Gaps = 64/544 (11%)

Query: 86  SPIARFITDA----FRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHW 141
           SP    IT+A    F K  F    Q +     +  +T ++V  VL    +  +A +FF+W
Sbjct: 60  SPHGAHITNALISIFTKQPFNPDNQELRNFGSM--LTHEVVENVLSGLKSWKIAYRFFNW 117

Query: 142 AGKQKGYKHNFASYNALAYCLSRNNLFRAADQVP------ELMDSQ--------GRIAEM 187
           A  Q G+ HN  +YNA+A CLS      A    P      ++++S+        G I++ 
Sbjct: 118 ASDQGGFNHNCYTYNAMASCLSH-----ARQNAPLSLLSMDIVNSRCAMSPGALGAISKS 172

Query: 188 --LEILEKMRRNLC----KPDVFAYTAMIRVLAAERNLDACLRVWEEM-KKDLVEADVMA 240
             ++++E   + +C    +PD +  T++++     R  D  L V+ E+  +  V+  V++
Sbjct: 173 GSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHVLS 232

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
            + L    C  G V +  EL   M++ GI ++   + VLI G V + +V KA  L K + 
Sbjct: 233 ILVLTFSKC--GEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQ 290

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            SG+  D+ +Y+++IGGLC  K+ +KA  L     +  + PD   ++ L+  C+E   +D
Sbjct: 291 KSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSE--EVD 348

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSS------- 411
            +  +  ++E L     A L  +   L G    + +  A  +   + G  Y+        
Sbjct: 349 IYRLIEERLEDL--DTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNKF 406

Query: 412 ----------VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
                        ++I++  L   G++  AL LF  M  +  + N L ++  I   + + 
Sbjct: 407 FMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLID-KLSNS 465

Query: 462 DILEACECHNKIIEMSQV---PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE 518
           + LE  EC+  + EM      P+   +N +   LC+  ++  A+ +VR+ +      P  
Sbjct: 466 NRLE--ECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVRE-MRVHGHEPWI 522

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
             Y L +  +C+   + +    L EM +EG  P+ V  SA I G  K   +++A ++F +
Sbjct: 523 KHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRD 582

Query: 579 LRER 582
           +  R
Sbjct: 583 ICAR 586



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 113/487 (23%), Positives = 207/487 (42%), Gaps = 60/487 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK--------- 231
           Q R+ + L++ +KM+++   PDV  Y A+I  L A++ ++  L +  EMK+         
Sbjct: 276 QSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQI 335

Query: 232 -----------------------DL-VEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
                                  DL  EA ++ Y +++ GL  G  V + + L   M  +
Sbjct: 336 LSKLIPYCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGD 395

Query: 268 GILIDRAI----------------YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
               +  +                + ++I+GL   GK+  A  L +D+V  G + ++ +Y
Sbjct: 396 NYTDNFEVNKFFMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLY 455

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N++I  L    + ++ Y L +        P   T N +  C   + R ++    L  + +
Sbjct: 456 NNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGC---LCRREDVTGALDMVRE 512

Query: 372 LKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGE 427
           ++        K +  LV    K +R   A +   E+  +G+   +  Y+  +   ++I  
Sbjct: 513 MRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKA 572

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           V +AL +F  +       + ++++  I    +   + EA +  ++++    VPSV  YN 
Sbjct: 573 VDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNL 632

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L  G CK G+ID A   +   +G     P    Y   I  +C +G  +  I + NEM  +
Sbjct: 633 LIDGWCKNGDIDQAFHCLSRMVGK-EREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGK 691

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           GC PN +   A+I G+CK G  + A   F  + ER+     +TIVY  ++   +  K   
Sbjct: 692 GCSPNRISFIALIHGLCKCGWPDAALLYFREMGERE---TPDTIVYVALITSFISNKNPT 748

Query: 608 LVLSGLK 614
           L    LK
Sbjct: 749 LAFEILK 755



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 111/460 (24%), Positives = 172/460 (37%), Gaps = 92/460 (20%)

Query: 93  TDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNF 152
           TD F  N+F     +V E+ +    +  +V + L       LA   F     + G K N 
Sbjct: 398 TDNFEVNKFF----MVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFR-DMVRVGCKQNV 452

Query: 153 ASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRV 212
             YN L   LS +N                R+ E   +L++M+ +  +P  F + ++   
Sbjct: 453 LLYNNLIDKLSNSN----------------RLEECYLLLKEMKGSGFRPTQFTHNSIFGC 496

Query: 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           L    ++   L +  EM+    E  +  Y  L+  LCK  R         EM   G L D
Sbjct: 497 LCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPD 556

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              Y   I+G V    V +A ++ +D+   GY  D+  YN++I G C+VK+  +A+ + +
Sbjct: 557 IVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILD 616

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392
             V   L P   T N L+    + G +D  F  L++M                  VGKE 
Sbjct: 617 EMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRM------------------VGKER 658

Query: 393 RIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
                             +V  Y  L+  L   G    A++L+ +MRG     N +SF I
Sbjct: 659 E----------------PNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISF-I 701

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
           A                                  L  GLCK G  DAA++  R+ +G  
Sbjct: 702 A----------------------------------LIHGLCKCGWPDAALLYFRE-MGER 726

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
            + P    Y   I     +       E+L EM  +G  P+
Sbjct: 727 ET-PDTIVYVALITSFISNKNPTLAFEILKEMVAKGKFPD 765


>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Brachypodium distachyon]
          Length = 801

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 196/420 (46%), Gaps = 25/420 (5%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S GR  E +E   +M    C+P  F Y A+ +VL     +   L ++  M       +  
Sbjct: 156 SAGRHQEAVEAFSRMGDFDCRPTAFVYNAVFQVLVDRGVILLALALYNRMVSSGCLPNST 215

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y+ L+ GLCK G  V   ++F EM E GI+ D  IY VL+  L  EG++  A  LL  +
Sbjct: 216 TYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSM 275

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            ++G   D   Y   + GLC+  + D+A+  FE+             + L+    + GR 
Sbjct: 276 KENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRF 335

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLV---GKEERIMMALDVFEELKGKGYSSVP--- 413
           D       +M  L  S++ D+   +  L+    +  R   A  + +E+K KG+  VP   
Sbjct: 336 DEGLSYYTEM--LGKSISPDI-TLYTILIRRFAEAGRTKDAFLLLDEMKDKGF--VPDTF 390

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN L+ AL ++G + +A  L  +M   N+ ++S + +I I    + G I +A +  +++
Sbjct: 391 CYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEM 450

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMML-------------VRDCLGNVASGPTEFK 520
            E    P+V  YN L  GL + G ++ A ML             +R  LG      TE  
Sbjct: 451 GEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDTESL 510

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
             L +  +C+SG+  K  ++L  + + G  P+ V  + +I+G+CK   L+ A ++F  L+
Sbjct: 511 RKL-VDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQ 569



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 179/393 (45%), Gaps = 9/393 (2%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L +   ++R L  P +++    + +LA+E +  A      + +   + A   A+  L++ 
Sbjct: 95  LFLYSAIKRRLRSPLLYSRAVSV-LLASEPDAVAMFDALADARAAGLPAPSAAFRALVLA 153

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
               GR     E F  M +        +Y  + + LV  G +  A  L   +V SG   +
Sbjct: 154 HSSAGRHQEAVEAFSRMGDFDCRPTAFVYNAVFQVLVDRGVILLALALYNRMVSSGCLPN 213

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
              Y  ++ GLC+      A K+F+  ++  + PD      LL      GR+++  +LL 
Sbjct: 214 STTYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLC 273

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLE 424
            M+  +     D   +  FL G  K  R+  A   FE L+  G++   I Y+ L+  L +
Sbjct: 274 SMK--ENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQ 331

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G   + L  + +M G ++  +   ++I I+   E+G   +A    +++ +   VP    
Sbjct: 332 AGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFC 391

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           YN L K L  +G ID A  L+ + L  NV    T   + + I  +C+ G  +K ++V +E
Sbjct: 392 YNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDST--THNIMICGLCKKGLIDKAMQVFDE 449

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           M + GC P  +  +A+I G+ + G LEEAR +F
Sbjct: 450 MGEHGCHPTVMTYNALIDGLYRAGMLEEARMLF 482



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/414 (21%), Positives = 169/414 (40%), Gaps = 14/414 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E     E ++       +  Y+ +I  L      D  L  + EM    +  D+  Y
Sbjct: 298 GRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLY 357

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI    + GR      L  EMK+ G + D   Y  L++ L   G + +A  L+ +++ 
Sbjct: 358 TILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQ 417

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +    D   +N +I GLC+    DKA ++F+   +    P   T N L+      G ++ 
Sbjct: 418 NNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEE 477

Query: 362 FFKLLAQMEK-------LKFSVAA----DLEKFFEFLVG--KEERIMMALDVFEELKGKG 408
              L  +ME        L+ ++ A    D E   + + G  +  +++ A  +   +   G
Sbjct: 478 ARMLFHKMEMGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESG 537

Query: 409 Y-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
               V  YN L+  L +   +  AL LF +++   +  + +++   I     +    +A 
Sbjct: 538 VVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDAT 597

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
                I+     PS+  YN + + LC++ ++  A+ L  D L    +   E +       
Sbjct: 598 MLFQNILRSGGFPSLPIYNTMMRSLCRMKKLSQAINLWLDYLPKKYNLSPEDEVIANARK 657

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
               G  ++ ++ L ++ Q     N    +  + G+C+   +++A ++F  L E
Sbjct: 658 CFEDGFLDETVKELIKIDQVYGSLNPNPYTIWVIGLCQVRKIDDALRIFHILEE 711



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 7/190 (3%)

Query: 397 ALDVFEELKGKGYSSVPI----YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           A+ +F+ L     + +P     +  L+ A    G  ++A+  F +M   +    +  ++ 
Sbjct: 125 AVAMFDALADARAAGLPAPSAAFRALVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYNA 184

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG-EIDAAMMLVRDCLGN 511
             Q  V+ G IL A   +N+++    +P+   Y  L  GLCK G  +DA  M   D +  
Sbjct: 185 VFQVLVDRGVILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMF--DEMLE 242

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
               P    Y + +  +C  G  E    +L  M + GCPP+EV  +  +SG+CK G ++E
Sbjct: 243 RGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDE 302

Query: 572 ARKVFTNLRE 581
           A   F  L++
Sbjct: 303 AFHRFELLQD 312



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 159/396 (40%), Gaps = 75/396 (18%)

Query: 91  FITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKV----ENNPTLASKFFHWAGKQK 146
            I   F+  +F  G    TE+   + ++PD+    + +    E   T  +       K K
Sbjct: 325 LIDGLFQAGRFDEGLSYYTEMLG-KSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDK 383

Query: 147 GYKHNFASYNALAYCL-SRNNLFRAADQVPELMDS------------------QGRIAEM 187
           G+  +   YN L   L    N+ RA   + E++ +                  +G I + 
Sbjct: 384 GFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKA 443

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK----------------- 230
           +++ ++M  + C P V  Y A+I  L     L+    ++ +M+                 
Sbjct: 444 MQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKMEMGNNPSLFLRLTLGANQ 503

Query: 231 ---------------------------KDLVEA----DVMAYVTLIMGLCKGGRVVRGHE 259
                                      + ++E+    DV+ Y TLI GLCK   +     
Sbjct: 504 VRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALR 563

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           LF+E++  GI  D   YG LI+GL    +   A  L ++++ SG    L IYN+++  LC
Sbjct: 564 LFKELQLKGISPDEITYGTLIDGLWRAHRENDATMLFQNILRSGGFPSLPIYNTMMRSLC 623

Query: 320 RVKQFDKAYKLF--EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
           R+K+  +A  L+   +  + +L+P+   +      C E G +D   K L +++++  S+ 
Sbjct: 624 RMKKLSQAINLWLDYLPKKYNLSPEDEVIANARK-CFEDGFLDETVKELIKIDQVYGSLN 682

Query: 378 ADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
            +    +   + +  +I  AL +F  L+  G    P
Sbjct: 683 PNPYTIWVIGLCQVRKIDDALRIFHILEEFGIVVTP 718



 Score = 42.4 bits (98), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 35/79 (44%)

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
           +G+    PT F Y      +   G     + + N M   GC PN      ++ G+CK G 
Sbjct: 170 MGDFDCRPTAFVYNAVFQVLVDRGVILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGM 229

Query: 569 LEEARKVFTNLRERKLLTE 587
             +A K+F  + ER ++ +
Sbjct: 230 AVDALKMFDEMLERGIVPD 248


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 117/496 (23%), Positives = 221/496 (44%), Gaps = 14/496 (2%)

Query: 112 SKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA 171
           S +  ++P  V+ +  ++ +P  A  F HW  +   YKH+  SY +L   L  N      
Sbjct: 83  SMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVV 142

Query: 172 DQVPELM----DSQGRIAEMLEILEKMRRN-----LCKPDVFAYTAMIRVLAAERNLDAC 222
            ++  LM    DS G    +L++  KM ++       K  +  Y  ++  LA    +D  
Sbjct: 143 FKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEM 202

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
            +V+ EM +D V  ++  Y  ++ G CK G V   ++   ++ E G+  D   Y  LI G
Sbjct: 203 KQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMG 262

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
                 +  A  +  ++   G R +   Y  +I GLC  ++ D+A  LF     D+  P 
Sbjct: 263 YCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPT 322

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
             T   L+       R      L+ +ME+                +  + +   A ++  
Sbjct: 323 VRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLG 382

Query: 403 ELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           ++  KG   +V  YN L+    + G ++ A+ +   M    L  N+ +++  I+ + +S 
Sbjct: 383 QMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS- 441

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
           ++ +A    NK++E   +P V  YN L  G C+ G  D+A  L+   + +    P ++ Y
Sbjct: 442 NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLL-SLMNDRGLVPDQWTY 500

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              I  +C+S   E+  ++ + + Q+G  PN V+ +A+I G CK G ++EA  +   +  
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS 560

Query: 582 RKLLTEANTIVYDEIL 597
           +  L   N++ ++ ++
Sbjct: 561 KNCL--PNSLTFNALI 574



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 113/469 (24%), Positives = 201/469 (42%), Gaps = 34/469 (7%)

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQV-PELMDSQ------------------GRIAEML 188
           YK     YN L   L+R  L     QV  E+++ +                  G + E  
Sbjct: 179 YKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEAN 238

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           + + K+      PD F YT++I      ++LD+  +V+ EM       + +AY  LI GL
Sbjct: 239 QYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGL 298

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C   R+    +LF +MK++        Y VLI+ L G  +  +A +L+K++ ++G + ++
Sbjct: 299 CVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNI 358

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             Y  +I  LC   +F+KA +L    ++  L P+  T N L+    + G +++   ++  
Sbjct: 359 HTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVEL 418

Query: 369 MEKLKFSVAADLEKFFEFLVGK-EERIMMALDVFEE-LKGKGYSSVPIYNILMGALLEIG 426
           ME  K S   +   + E + G  +  +  A+ V  + L+ K    V  YN L+      G
Sbjct: 419 MESRKLS--PNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSG 476

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
               A  L   M    L  +  +++  I    +S  + EAC+  + + +    P+V  Y 
Sbjct: 477 NFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYT 536

Query: 487 CLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
            L  G CK G++D A      ML ++CL      P    +   I  +C  G+ ++   + 
Sbjct: 537 ALIDGYCKAGKVDEAHLMLEKMLSKNCL------PNSLTFNALIHGLCADGKLKEATLLE 590

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            +M + G  P     + +I  + K G  + A   F  +       +A+T
Sbjct: 591 EKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHT 639



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 101/431 (23%), Positives = 188/431 (43%), Gaps = 36/431 (8%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           +  +YN+L     R+  F +A ++  LM+ +G +                PD + YT+MI
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV----------------PDQWTYTSMI 504

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
             L   + ++    +++ +++  V  +V+ Y  LI G CK G+V   H +  +M     L
Sbjct: 505 DSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCL 564

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
            +   +  LI GL  +GK+ +A  L + +V  G +  +     +I  L +   FD AY  
Sbjct: 565 PNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSR 624

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK 390
           F+  +     PD  T    +      GR+ +   ++A+M   +  V+ DL  +   + G 
Sbjct: 625 FQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMR--ENGVSPDLFTYSSLIKGY 682

Query: 391 EE--RIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
            +  +   A DV + ++  G    P  +  +  +  + E+K     +GK +G   E+ ++
Sbjct: 683 GDLGQTNFAFDVLKRMRDTGCE--PSQHTFLSLIKHLLEMK-----YGKQKGSEPELCAM 735

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           S  +     VE   +LE      K++E S  P+  +Y  L  G+C++G +  A  +    
Sbjct: 736 SNMMEFDTVVE---LLE------KMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHM 786

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
             N    P+E  +   +   C+  +  +  +V+++M   G  P    C  +I G+ K G 
Sbjct: 787 QRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGE 846

Query: 569 LEEARKVFTNL 579
            E    VF NL
Sbjct: 847 KERGTSVFQNL 857



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 101/473 (21%), Positives = 197/473 (41%), Gaps = 75/473 (15%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           +KG   N  +YNAL   YC                   +G I + ++++E M      P+
Sbjct: 386 EKGLMPNVITYNALINGYC------------------KRGMIEDAVDVVELMESRKLSPN 427

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
              Y  +I+    + N+   + V  +M +  V  DV+ Y +LI G C+ G     + L  
Sbjct: 428 TRTYNELIKGYC-KSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLS 486

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            M + G++ D+  Y  +I+ L    +V +ACDL   L   G   ++ +Y ++I G C+  
Sbjct: 487 LMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAG 546

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           + D+A+ + E  +  +  P+  T N L+      G++     L  +M K+          
Sbjct: 547 KVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQ------- 599

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                                       +V    IL+  LL+ G+   A   F +M    
Sbjct: 600 ---------------------------PTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSG 632

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
            + ++ +++  IQ +   G +L+A +   K+ E    P +  Y+ L KG   +G+ + A 
Sbjct: 633 TKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAF 692

Query: 503 MLVRDCLGNVASGPTEFKYALTILHV---------------CRSG---EAEKIIEVLNEM 544
            +++  + +    P++  +   I H+               C      E + ++E+L +M
Sbjct: 693 DVLKR-MRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKM 751

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            +    PN      +I G+C+ G L  A KVF +++  + ++ +  +V++ +L
Sbjct: 752 VEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSE-LVFNALL 803



 Score = 42.7 bits (99), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 3/162 (1%)

Query: 175 PEL--MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
           PEL  M +      ++E+LEKM  +   P+  +Y  +I  +    NL    +V++ M+++
Sbjct: 730 PELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRN 789

Query: 233 L-VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
             +    + +  L+   CK  +     ++  +M   G L       VLI GL  +G+  +
Sbjct: 790 EGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKER 849

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
              + ++L+  GY  D   +  II G+ +    +  Y+LF V
Sbjct: 850 GTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNV 891


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 200/435 (45%), Gaps = 15/435 (3%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  E + +L  M+ +  + DV  Y  +IR L     LDA L + +EM    V+ +V+ Y 
Sbjct: 138 RTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYS 197

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            L+ G C+ GR     ++F +M   GI  D  ++  LI+ L  EGK GKA  +   +V  
Sbjct: 198 CLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQR 257

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   ++  YN +I  LC+     +A  L +      +APD  T N L+   + +  MD  
Sbjct: 258 GLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEA 317

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILM 419
              L +M +    V  D+  F   + G  K  R+  A+ V E +  +G   ++  YN L+
Sbjct: 318 MSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLI 377

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA----CECHNKIIE 475
           G  L + +VK A+ L  ++    LE +S ++SI I    +  ++  A    C    + I+
Sbjct: 378 GGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIK 437

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
                 +  Y  L   +C+ G ++ AM L  +   N   G     Y+  I   C+SG+ +
Sbjct: 438 ----AELFHYIPLLAAMCQQGMMERAMGLFNEMDKN--CGLDAIAYSTMIHGACKSGDMK 491

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
            + +++ +M  EG  P+ V  S +I+   K G LEEA +V   +     +   +  V+D 
Sbjct: 492 TVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFV--PDVAVFDS 549

Query: 596 ILIEHMKKKTADLVL 610
           ++  +  +   D VL
Sbjct: 550 LIKGYSAEGQTDKVL 564



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 179/410 (43%), Gaps = 46/410 (11%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GR  ++ ++ E M R   KPDV  +T +I  L  E       +V + M +  +E +V+ 
Sbjct: 206 SGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVT 265

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI  LCK G V     L +EM + G+  D   Y  LI GL G  ++ +A   L++++
Sbjct: 266 YNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMI 325

Query: 301 --DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
             D+    D+  +NS+I GLC++ +  +A K+ E+                    AE G 
Sbjct: 326 QGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMM-------------------AERGC 366

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSSVPI- 414
           M N                      + +L+G   +  ++ MA+++ +EL   G       
Sbjct: 367 MCNLVT-------------------YNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFT 407

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y+IL+    ++ EV +A      MR   ++     +   +    + G +  A    N++ 
Sbjct: 408 YSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMD 467

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           +   + ++ AY+ +  G CK G++     L++D L +    P    Y++ I    + G+ 
Sbjct: 468 KNCGLDAI-AYSTMIHGACKSGDMKTVKQLIQDML-DEGLAPDAVTYSMLINMYAKLGDL 525

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           E+   VL +MT  G  P+  +  ++I G    G  ++  K+   +R + +
Sbjct: 526 EEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMRAKNV 575



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 154/375 (41%), Gaps = 54/375 (14%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+G + N  +YN L   L +    R A  + + MD +G                  PDV 
Sbjct: 256 QRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKG----------------VAPDVV 299

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKK--DLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
            Y  +I  L+    +D  +   EEM +   +VE DV+ + ++I GLCK GR+ +  ++  
Sbjct: 300 TYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVRE 359

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            M E G + +   Y  LI G +   KV  A +L+ +L  SG   D   Y+ +I G  ++ 
Sbjct: 360 MMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMW 419

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           + D+A K      Q  +  +     PLL    + G M+    L  +M+            
Sbjct: 420 EVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMD------------ 467

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                                 K  G  ++    ++ GA  + G++K    L   M    
Sbjct: 468 ----------------------KNCGLDAIAYSTMIHGA-CKSGDMKTVKQLIQDMLDEG 504

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           L  +++++S+ I  + + GD+ EA     ++     VP VA ++ L KG    G+ D  +
Sbjct: 505 LAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVL 564

Query: 503 MLVRDCLG-NVASGP 516
            L+ +    NVA  P
Sbjct: 565 KLIHEMRAKNVAFDP 579



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 1/158 (0%)

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y  +M  L       +A+ L   M+   +  + +++   I+   ++ ++  A E  +++ 
Sbjct: 126 YTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMC 185

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                P+V  Y+CL +G C+ G       +  D +      P    +   I  +C+ G+ 
Sbjct: 186 GSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFED-MSRRGIKPDVIMFTGLIDDLCKEGKT 244

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
            K  +V + M Q G  PN V  + +I+ +CK G++ EA
Sbjct: 245 GKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREA 282


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 185/425 (43%), Gaps = 7/425 (1%)

Query: 180 SQGRIAEMLEILEKMRRN---LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           ++ R+ E LE+L  M  +    C P+V  Y  +I  L   + +D    V + M    V+ 
Sbjct: 173 NEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKL 232

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           DV+ Y T+I GLCK   V R   + + M + G+  D   Y  +I+GL     V +A  +L
Sbjct: 233 DVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVL 292

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
           + ++D G + D+  YN+II GLC+ +  D+A  + +  +  D+ PD  T N L+      
Sbjct: 293 QHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLST 352

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIY 415
           G      + L +M                  + K  +   A  +F  +  KG   +V IY
Sbjct: 353 GEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIY 412

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
            IL+      G +     L   M    +  N+  F+I +  + +   I EA    +++ +
Sbjct: 413 GILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQ 472

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P V  Y  L   LCK+G +D A++     + N    P    +   +  +C     E
Sbjct: 473 HGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMI-NDGVTPNSVVFNSLVYGLCTVDRWE 531

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           K  E+  EM  +G  PN V  + I+  +C  G +  A+++  ++   ++    N I Y+ 
Sbjct: 532 KAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSM--ERVGVRPNVISYNT 589

Query: 596 ILIEH 600
           ++  H
Sbjct: 590 LIGGH 594



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 119/517 (23%), Positives = 209/517 (40%), Gaps = 67/517 (12%)

Query: 102 QWGPQVVTELSKL--RRVTPDLVAEVLKVE----NNPTLASKFFHWAGKQKGYKHNFASY 155
           +W  +VV  L ++  R + PD+V   L ++    N     ++   +   +KG K N   Y
Sbjct: 354 EW-KEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIY 412

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEMLEILEKMRR 196
             L +  +          + +LM + G                    I E + I  +M +
Sbjct: 413 GILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQ 472

Query: 197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
           +   PDV  Y  +I  L     +D  +  + +M  D V  + + + +L+ GLC   R  +
Sbjct: 473 HGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEK 532

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
             ELF EM + G+  +   +  ++  L  EG+V  A  L+  +   G R ++  YN++IG
Sbjct: 533 AEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIG 592

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           G C   + D+A +L +V V   L PD  + + LL    + GR+DN + L  +M  L+  V
Sbjct: 593 GHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREM--LRKGV 650

Query: 377 AADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALY 433
                 +   L G     R   A +++  +   G    +  YNI++  L +   V +A  
Sbjct: 651 TPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFK 710

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           +F  +   +L  N ++F+I I    + G   +A +    I     VP+V  Y  + K + 
Sbjct: 711 IFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNII 770

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           + G +D                  EF                    +   M + GC P+ 
Sbjct: 771 QEGLLD------------------EFD------------------NLFLAMEKSGCTPDS 794

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           V+ +AII  +   G +  A    + + E     EA+T
Sbjct: 795 VMLNAIIRSLLGRGEIMRAGAYLSKIDEMNFSLEAST 831



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 164/385 (42%), Gaps = 20/385 (5%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           V  D+  Y  L    C+ GR+  G   F  + + G  ++  +   L+ GL    +V +A 
Sbjct: 86  VRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAM 145

Query: 294 D-LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD---DLAPDFSTVNPL 349
           D LL+ + + G   ++   N+++ GLC  K+ ++A +L     +D   +  P+  T N +
Sbjct: 146 DILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTI 205

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGK 407
           +    +   +D    +L  M  +   V  D+  +   + G  K + +  A  V + +  K
Sbjct: 206 IDGLCKAQAVDRAEGVLQHM--IDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDK 263

Query: 408 GYS-SVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDIL 464
           G    V  YN ++  L +   V +A  +   M  +G+  +V + +  I   C  ++ D  
Sbjct: 264 GVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRA 323

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYA 522
           +    H  +I+    P +  YNCL  G    GE      +VR      A G  P    Y+
Sbjct: 324 DGVLQH--MIDKDVKPDIQTYNCLIHGYLSTGEWKE---VVRRLEEMYARGLDPDVVTYS 378

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           L + ++C++G+  +  ++   M ++G  PN  I   ++ G    G + +   +   +   
Sbjct: 379 LLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVAN 438

Query: 583 KLLTEANTIVYDEILIEHMKKKTAD 607
            +    N  +++ +L  + KK   D
Sbjct: 439 GI--SPNNYIFNIVLCAYAKKAMID 461



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/270 (19%), Positives = 102/270 (37%), Gaps = 29/270 (10%)

Query: 147 GYKHNFASYNAL--AYCLSRNNLFRAADQVPELMD----------------------SQG 182
           G + N  SYN L   +CL+        D+  +L+D                        G
Sbjct: 579 GVRPNVISYNTLIGGHCLAGR-----TDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTG 633

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           RI     +  +M R    P    Y+ +++ L   R       ++  M K   + D+  Y 
Sbjct: 634 RIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYN 693

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++ GLCK   V    ++F+ +    +  +   + ++I+ L   G+   A DL   +   
Sbjct: 694 IILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSH 753

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   ++  Y  ++  + +    D+   LF    +    PD   +N ++      G +   
Sbjct: 754 GLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRA 813

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392
              L++++++ FS+ A        L  +EE
Sbjct: 814 GAYLSKIDEMNFSLEASTTSLLISLFSREE 843



 Score = 39.7 bits (91), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 14/144 (9%)

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEID---AAMMLVRDCLGNVASGPTEFKYALTI 525
           C NK+      P +  Y+ LT   C++G I+   AA  L+      V     E      +
Sbjct: 82  CSNKV-----RPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRV----NEVVINQLL 132

Query: 526 LHVCRSGEAEKIIEVL-NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
             +C +   ++ +++L   M + GC PN V C+ ++ G+C    +EEA ++   + E   
Sbjct: 133 NGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGG 192

Query: 585 LT-EANTIVYDEILIEHMKKKTAD 607
                N + Y+ I+    K +  D
Sbjct: 193 GNCTPNVVTYNTIIDGLCKAQAVD 216


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 186/444 (41%), Gaps = 42/444 (9%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +   GRI   + I + M      P+   Y+A+I  L   R +D  L +  +MKK     D
Sbjct: 136 LSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 195

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC-DLL 296
            + Y  LI GLCK G V      F EM E G   D   Y +LI G    G    A   L 
Sbjct: 196 TITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLA 255

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
           ++   +G   D+  Y +I+  L + K+ ++A  L E    +   P  +T N LL    +M
Sbjct: 256 QETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKM 315

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVP 413
           GR++    LL ++  +      D+  +   +  +GKE+R   A  +F+E+  +G +    
Sbjct: 316 GRLEEAIDLLRKI--VDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTV 373

Query: 414 IYNILMGALLEIGEVKKA-----------------------------------LYLFGKM 438
            Y  L+  LL+ G++ +A                                   + +F  M
Sbjct: 374 CYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSM 433

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
               L  N + +S  I    ++  +  A E   ++ +    P    YN L  GLCK G++
Sbjct: 434 EARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDV 493

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           +AA     + L      P  + Y + I   C++G  +    V ++M+   C  N V   A
Sbjct: 494 EAARAFFDEML-EAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGA 552

Query: 559 IISGMCKHGTLEEARKVFTNLRER 582
           +ISG+CK   L +A   F +++ER
Sbjct: 553 LISGLCKRRQLTKASLYFQHMKER 576



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 115/469 (24%), Positives = 202/469 (43%), Gaps = 42/469 (8%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           +I E + ++EK+  N C P +  Y A++  L     L+  + +  ++  +    DV+ Y 
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +LI GL K  R    ++LF+EM   G+ +D   Y  LI  L+  GK+ +A  + K +   
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D+   +++I GL +  +   A ++F+      LAP+    + L+    +  +MD  
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILM 419
            ++LAQM+K   +   D   +   + G  K   +  A   F+E+   G    V  YNIL+
Sbjct: 181 LEMLAQMKKAFCT--PDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILI 238

Query: 420 GALLEIGEVKKALYLFGKMRGLN-LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
               + G    A +   +   +N   ++  +++  +    ++  I EA     KI     
Sbjct: 239 SGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGC 298

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVR------------------DCLGNVASGPTEFK 520
            P++A YN L  GLCK+G ++ A+ L+R                  D LG        +K
Sbjct: 299 TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYK 358

Query: 521 ----------------YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
                           Y   I  + ++G+  +   V   MT  GC P+ V  S +I G+ 
Sbjct: 359 LFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLS 418

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
           K G +  A ++F ++  R L    N +VY  ++    K +  D  L  L
Sbjct: 419 KAGRIGAAVRIFKSMEARGL--APNEVVYSALIHGLCKARKMDCALEML 465



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 118/510 (23%), Positives = 214/510 (41%), Gaps = 95/510 (18%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G     A+YNAL      N L +            GR+ E +++L K+  N C PDV  Y
Sbjct: 16  GCTPTIATYNALL-----NGLCK-----------MGRLEEAIDLLRKIVDNGCTPDVVTY 59

Query: 207 TAMIRVLAAERNLDACLRVWEEMK---------------KDLVEA--------------- 236
           T++I  L  E+      ++++EM                ++L++                
Sbjct: 60  TSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTS 119

Query: 237 -----DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
                DV+   T+I GL K GR+     +F+ M+  G+  +  +Y  LI GL    K+  
Sbjct: 120 HGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC 179

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A ++L  +  +    D   YN +I GLC+    + A   F+  ++    PD  T N L+ 
Sbjct: 180 ALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILIS 239

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGY 409
              + G  D     LAQ E        D+  +   +  + K ++I  A+ + E++   G 
Sbjct: 240 GFCKAGNTDAASHSLAQ-ETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGC 298

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGK------------------------------- 437
           + ++  YN L+  L ++G +++A+ L  K                               
Sbjct: 299 TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYK 358

Query: 438 ------MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
                 +RGL L+  ++ ++  I+  +++G I +A   +  +     VP V   + +  G
Sbjct: 359 LFKEMALRGLALD--TVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDG 416

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
           L K G I AA+ + +  +      P E  Y+  I  +C++ + +  +E+L +M +  C P
Sbjct: 417 LSKAGRIGAAVRIFKS-MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 475

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           + +  + +I G+CK G +E AR  F  + E
Sbjct: 476 DTITYNILIDGLCKSGDVEAARAFFDEMLE 505



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 149/356 (41%), Gaps = 37/356 (10%)

Query: 139 FHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNL 198
           F  AG      H+ A    +  C    + + A   + + +    +I E + ++EK+  N 
Sbjct: 241 FCKAGNTDAASHSLAQETTINGCTIDIHTYTA---IVDWLAKNKKIEEAVALMEKITANG 297

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C P +  Y A++  L     L+  + +  ++  +    DV+ Y +LI GL K  R    +
Sbjct: 298 CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAY 357

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           +LF+EM   G+ +D   Y  LI  L+  GK+ +A  + K +   G   D+   +++I GL
Sbjct: 358 KLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGL 417

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
            +  +   A ++F+      LAP+    + L+    +  +MD   ++LAQM+K  F    
Sbjct: 418 SKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKK-AFCTPD 476

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM 438
            +                                  YNIL+  L + G+V+ A   F +M
Sbjct: 477 TIT---------------------------------YNILIDGLCKSGDVEAARAFFDEM 503

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
                + +  +++I I    ++G+   AC   + +       +V  Y  L  GLCK
Sbjct: 504 LEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCK 559



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 42/88 (47%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G +       ++M    CKPDV+ Y  +I       N DA   V+++M      A+V+ 
Sbjct: 490 SGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVT 549

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENG 268
           Y  LI GLCK  ++ +    F+ MKE G
Sbjct: 550 YGALISGLCKRRQLTKASLYFQHMKERG 577


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 196/420 (46%), Gaps = 19/420 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + +++  L IL KM +    P +    +++        +   + + ++M +   + D + 
Sbjct: 123 RSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVT 182

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + TL+ GL +  +      L   M   G   D   YG +I GL   G+   A +LL  + 
Sbjct: 183 FTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKME 242

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                AD+ IYN+II GLC+ K  D A+ LF       + PD  T NPL+ C    GR  
Sbjct: 243 KGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWS 302

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEEL-KGKG-YSSVPIY 415
           +  +LL+ M  L+ ++  DL  FF  L+    KE +++ A  +++E+ K K  +  V  Y
Sbjct: 303 DASRLLSDM--LEKNINPDL-VFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAY 359

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+    +   V++ + +F +M    L  N+++++  I    ++ D   A     +++ 
Sbjct: 360 NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS 419

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLV-----RDCLGNVASGPTEFKYALTILHVCR 530
               P +  YN L  GLC  G ++ A+++      RD   ++ +      Y   I  +C+
Sbjct: 420 DGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVT------YTTMIEALCK 473

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +G+ E   ++   ++ +G  PN V  + ++SG C+ G  EEA  +F  ++E   L  + T
Sbjct: 474 AGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGT 533



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/425 (22%), Positives = 188/425 (44%), Gaps = 14/425 (3%)

Query: 164 RNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACL 223
           R NL R   Q  +L D+ G   +M+       ++   P +  ++ ++  +A     D  +
Sbjct: 43  RENLSRKVLQDLKLDDAIGLFGDMV-------KSRPFPSIVEFSKLLSAIAKMNKFDLVI 95

Query: 224 RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
            + E+M+   +  ++  Y   I   C+  ++     +  +M + G          L+ G 
Sbjct: 96  SLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGF 155

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
               ++ +A  L+  +V+ GY+ D   + +++ GL +  +  +A  L E  V     PD 
Sbjct: 156 CHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDL 215

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVF 401
            T   ++    + G  D    LL +MEK K  + AD+  +   + G  K + +  A D+F
Sbjct: 216 VTYGAVINGLCKRGEPDLALNLLNKMEKGK--IEADVVIYNTIIDGLCKYKHMDDAFDLF 273

Query: 402 EELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
            +++ KG    V  YN L+  L   G    A  L   M   N+  + + F+  I   V+ 
Sbjct: 274 NKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKE 333

Query: 461 GDILEACECHNKIIEMSQ-VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           G ++EA + ++++++     P V AYN L KG CK   ++  M + R+       G T  
Sbjct: 334 GKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT-V 392

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            Y   I    ++ + +    V  +M  +G  P+ +  + ++ G+C +G +E A  VF  +
Sbjct: 393 TYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYM 452

Query: 580 RERKL 584
           ++R +
Sbjct: 453 QKRDM 457



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 78/168 (46%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E +E+  +M +     +   YT +I      R+ D    V+++M  D V  D+M Y 
Sbjct: 371 RVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYN 430

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            L+ GLC  G V     +F  M++  + +D   Y  +IE L   GKV    DL   L   
Sbjct: 431 ILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLK 490

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           G + ++  Y +++ G CR    ++A  LF    +D   P+  T N L+
Sbjct: 491 GVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLI 538



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 125/299 (41%), Gaps = 42/299 (14%)

Query: 64  LPNQKTQSPPSDPKTFQLQRHLSPIARF---ITDAF-RKNQFQWGPQVVTELSKLRRVTP 119
           L N    S  S   +  L+++++P   F   + DAF ++ +     ++  E+ K +   P
Sbjct: 295 LCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFP 354

Query: 120 DLVAEVLKVENNPTLASKFFHWAG-----------KQKGYKHNFASYNALAY-------C 161
           D+VA         TL   F  +              Q+G   N  +Y  L +       C
Sbjct: 355 DVVAY-------NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDC 407

Query: 162 LSRNNLFR--AADQV-PELMD---------SQGRIAEMLEILEKMRRNLCKPDVFAYTAM 209
            +   +F+   +D V P++M          + G +   L + E M++   K D+  YT M
Sbjct: 408 DNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTM 467

Query: 210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
           I  L     ++    ++  +    V+ +V+ Y T++ G C+ G       LF EMKE+G 
Sbjct: 468 IEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGP 527

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
           L +   Y  LI   + +G    + +L+K++   G+  D   +  ++  +    + DK++
Sbjct: 528 LPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTF-GLVTNMLHDGRLDKSF 585


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 199/422 (47%), Gaps = 15/422 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ + LEI+++M     +PD   Y+ +I      +N+     + +EMKK  +   V+ Y
Sbjct: 360 GKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTY 419

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I GLC+ G +   + + REM  NG+  +  +Y  L+     EG+V ++  +L+ + +
Sbjct: 420 SVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMRE 479

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM-- 359
            G   D+  YNS+I G C+ K+ ++A       ++  L P+  T    +   ++ G M  
Sbjct: 480 QGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEI 539

Query: 360 -DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFE-ELKGKGYSSVPIY 415
            D +F      E L   V  ++  +   + G  KE  +  A  VF   L  +    V  Y
Sbjct: 540 ADRYFN-----EMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTY 594

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           ++L+  L   G++ +A  +F +++   L  N+ +++  I    + G++ +A +   ++  
Sbjct: 595 SVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCI 654

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P +  YN L  GLCK GEI+ A  L  D  G   + P    YA  +   C+S    
Sbjct: 655 KGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLT-PNCVTYAAMVDGYCKSKNPT 713

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
              ++L EM   G PP+  I + I++  CK    E+A  +F  + E+     A+T+ ++ 
Sbjct: 714 AAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF---ASTVSFNT 770

Query: 596 IL 597
           ++
Sbjct: 771 LI 772



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 191/404 (47%), Gaps = 7/404 (1%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           IL +M  N  KP+   YT ++   A E  ++    + E M++  +  DV  Y +LI+G C
Sbjct: 438 ILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFC 497

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K  R+        EM E  +  +   YG  I+G    G++  A     +++  G   ++G
Sbjct: 498 KAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVG 557

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
           IY ++I G C+     +A+ +F   +   +  D  T + L+   +  G+M   F + +++
Sbjct: 558 IYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSEL 617

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
           ++    +  +   +   + G  K+  +  A  + EE+  KG +  +  YNIL+  L + G
Sbjct: 618 QEK--GLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAG 675

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
           E+++A  LF  + G  L  N ++++  +  + +S +   A +   +++     P    YN
Sbjct: 676 EIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYN 735

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            +    CK  + + A+ L ++ L    +    F     I   C+SG+ ++   +L EM +
Sbjct: 736 VILNFCCKEEKFEKALDLFQEMLEKGFASTVSFN--TLIEGYCKSGKLQEANHLLEEMIE 793

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +   PN V  +++I   CK G + EA++++  ++ER ++  A T
Sbjct: 794 KQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKT 837



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 202/431 (46%), Gaps = 10/431 (2%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           M+ + R A+++ +LE +   L KP+   Y A+I     + +++   R+ +EM    +EA+
Sbjct: 288 MEKRSREAKLM-LLEMIDVGL-KPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEAN 345

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           ++ + TL+ G+CK G++ +  E+ +EM E G+  D   Y +LIEG      + +A +LL 
Sbjct: 346 LIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLD 405

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           ++        +  Y+ II GLCR         +    V + L P+      L+   A+ G
Sbjct: 406 EMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEG 465

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALD-VFEELKGKGYSSVPI 414
           R++    +L +M +    +  D+  +   ++G  K +R+  A   + E L+ +   +   
Sbjct: 466 RVEESRMILERMREQ--GILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHT 523

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y   +    + GE++ A   F +M    +  N   ++  I+ H + G++ EA      I+
Sbjct: 524 YGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFIL 583

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
               +  V  Y+ L  GL + G++  A  +  + L      P  F Y   I   C+ G  
Sbjct: 584 SRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSE-LQEKGLLPNAFTYNSLISGSCKQGNV 642

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           +K  ++L EM  +G  P+ V  + +I G+CK G +E A+ +F ++  R L    N + Y 
Sbjct: 643 DKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGL--TPNCVTYA 700

Query: 595 EILIEHMKKKT 605
            ++  + K K 
Sbjct: 701 AMVDGYCKSKN 711



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 176/387 (45%), Gaps = 11/387 (2%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+V  YTA+I     E N+     V+  +    V  DV  Y  LI GL + G++     +
Sbjct: 554 PNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGI 613

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F E++E G+L +   Y  LI G   +G V KA  LL+++   G   D+  YN +I GLC+
Sbjct: 614 FSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCK 673

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             + ++A  LF+      L P+  T   ++    +       F+LL +M        A +
Sbjct: 674 AGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFI 733

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
                    KEE+   ALD+F+E+  KG++S   +N L+    + G++++A +L  +M  
Sbjct: 734 YNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIE 793

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
                N ++++  I  + ++G + EA     ++ E + +P+   Y  L  G   IG +  
Sbjct: 794 KQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSE 853

Query: 501 AMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI--- 555
              L  +    VA G  P +  Y + I   CR G   +  ++ +E+  +G P        
Sbjct: 854 VSALFEEM---VAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLG 910

Query: 556 ---CSAIISGMCKHGTLEEARKVFTNL 579
              CS I  G    G ++EA +V  ++
Sbjct: 911 LPTCSVIARGFQIAGNMDEAAEVLRSM 937



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 116/502 (23%), Positives = 207/502 (41%), Gaps = 72/502 (14%)

Query: 154 SYNALAYCLSRNNLFRAADQV---PELMDSQGRIAEML-----EILEKMRRNLCK----P 201
           SY  + + +   N+F         P L+     + ++L     E+  K+   +C     P
Sbjct: 163 SYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLP 222

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEM-------------KKDLVEA----DVMAYVTL 244
           DV+ YT MI       N+    RV  EM             K+ +V+     D+  Y  L
Sbjct: 223 DVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDIL 282

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G C   R      +  EM + G+  +   Y  LI+G + +G + +A  +  ++V  G 
Sbjct: 283 INGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGI 342

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
            A+L I+N+++ G+C+  + +KA ++ +  ++  + PD  T + L+        M   F+
Sbjct: 343 EANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFE 402

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE 424
           LL +M+K K +                                   +V  Y++++  L  
Sbjct: 403 LLDEMKKRKLA----------------------------------PTVLTYSVIINGLCR 428

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G ++    +  +M    L+ N++ ++  +  H + G + E+     ++ E   +P V  
Sbjct: 429 CGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFC 488

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN L  G CK   ++ A   + + L      P    Y   I    ++GE E      NEM
Sbjct: 489 YNSLIIGFCKAKRMEEARTYLMEMLERRLR-PNAHTYGAFIDGYSKAGEMEIADRYFNEM 547

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
              G  PN  I +A+I G CK G + EA  VF  +  R++L +  T     +LI  + + 
Sbjct: 548 LSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTY---SVLIHGLSRN 604

Query: 605 TADLVLSGLKFFGLESKLKAKG 626
                    + FG+ S+L+ KG
Sbjct: 605 G-----KMHEAFGIFSELQEKG 621



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 158/351 (45%), Gaps = 21/351 (5%)

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           +  I+ +L++     G + +A ++     +  +R  L   NS++G L +  + +  +K+F
Sbjct: 153 NSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVF 212

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-EKLKF--------------SV 376
           +      + PD  T   ++    ++G + +  ++L +M EK +                +
Sbjct: 213 DGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGL 272

Query: 377 AADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALY 433
             DL  +   + G   E+R   A  +  E+   G    PI YN L+   +  G++++A  
Sbjct: 273 VPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFR 332

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           +  +M    +E N + ++  +    ++G + +A E   +++E    P    Y+ L +G C
Sbjct: 333 IKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHC 392

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           +   +  A  L+ D +      PT   Y++ I  +CR G  +    +L EM   G  PN 
Sbjct: 393 RGQNMARAFELL-DEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNA 451

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           V+ + +++   K G +EE+R +   +RE+ +L +     Y+ ++I   K K
Sbjct: 452 VVYTTLMTAHAKEGRVEESRMILERMREQGILPD--VFCYNSLIIGFCKAK 500



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 1/158 (0%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            ++LE+M      PD F Y  ++     E   +  L +++EM +    A  +++ TLI G
Sbjct: 716 FQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEG 774

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            CK G++   + L  EM E   + +   Y  LI+     G +G+A  L  ++ +      
Sbjct: 775 YCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPT 834

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
              Y S++ G   +    +   LFE  V   + PD  T
Sbjct: 835 AKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMT 872



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 110/284 (38%), Gaps = 30/284 (10%)

Query: 115 RRVTPDLVAEVLKVEN-----NPTLASKFFHWAGKQKGYKHNFASYNA-LAYCLSRNNLF 168
           R +TP+ V     V+      NPT A +        +G   +   YN  L +C       
Sbjct: 690 RGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEM-LLRGVPPDAFIYNVILNFCCKEEKFE 748

Query: 169 RAADQVPELMDS-----------------QGRIAEMLEILEKMRRNLCKPDVFAYTAMIR 211
           +A D   E+++                   G++ E   +LE+M      P+   YT++I 
Sbjct: 749 KALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLID 808

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
                  +    R+W EM++  V      Y +L+ G    G +     LF EM   GI  
Sbjct: 809 HNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEP 868

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLV------DSGYRADLGIYNSIIGGLCRVKQFD 325
           D+  Y V+I+    EG V +AC L  +++       SG+R  L   + I  G       D
Sbjct: 869 DKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMD 928

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
           +A ++    V+     + +++  L+         ++   LL QM
Sbjct: 929 EAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQM 972


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 105/455 (23%), Positives = 211/455 (46%), Gaps = 20/455 (4%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG------------------RIA 185
           K+ G   N  +YN L Y L ++   R A +V ++M + G                   + 
Sbjct: 174 KEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKRDVE 233

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
            ++ +L +M  +  KP+V++YT  IRVL      +   ++ ++M+ +  + DV+    LI
Sbjct: 234 TVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLI 293

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
             LC  GRV    ++F +MK +    DR  Y  L++     G      ++   +   GY 
Sbjct: 294 QILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYN 353

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            ++  Y +++  LC+V + D+A  +F+   Q  + P   + N L+    +  R+++  +L
Sbjct: 354 DNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALEL 413

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLE 424
              M     +        F    GK    + A+  +E +K KG    V   N ++ +L +
Sbjct: 414 FNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAK 473

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G +  A  +F +++ + +  +++++++ I+C  ++ +  EA +  +++IE   VP V A
Sbjct: 474 SGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLA 533

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
            N L   L K G  + A  +  + L  +   PT+  Y   +  + R G+ ++++ +L EM
Sbjct: 534 VNSLIDTLYKAGRGNEAWKIFHE-LKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEM 592

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
                PPN +  + ++  +CK+G +  A  +  N+
Sbjct: 593 NSNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNM 627



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 109/449 (24%), Positives = 197/449 (43%), Gaps = 46/449 (10%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           ELM + GR+ +M ++ + M+R + K +V  +  + R L  E  L +       MK+  + 
Sbjct: 120 ELMRAHGRVRDMAQVFDLMQRQIVKANVGTFLTIFRSLGMEGGLRSAPVALPMMKEAGIV 179

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            +   Y  LI  L K G      E+++ M  +GI+     Y VL+    G+  V     L
Sbjct: 180 LNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAF-GKRDVETVVWL 238

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
           L+++ D G + ++  Y   I  L +  +F++AYK+ +    +   PD  T   L+    +
Sbjct: 239 LREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCD 298

Query: 356 MGRM----DNFFKLLAQMEK----------------------LKFSVAADLEKFFEFLVG 389
            GR+    D F+K+ A  +K                      ++   A   + + + +V 
Sbjct: 299 AGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVA 358

Query: 390 ---------KEERIMMALDVFEELKGKG-----YSSVPIYNILMGALLEIGEVKKALYLF 435
                    +  R+  A DVF+++K KG     YS    YN L+   L+   +  AL LF
Sbjct: 359 YTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYS----YNSLISGFLKADRLNHALELF 414

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             M       N  ++ + I  + +SG+ L+A + +  +     VP V A N +   L K 
Sbjct: 415 NHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKS 474

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G +  A  +  + L ++   P    Y + I    ++  A++ ++V +EM +  C P+ + 
Sbjct: 475 GRLGMAKRVFHE-LKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLA 533

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKL 584
            +++I  + K G   EA K+F  L+E  L
Sbjct: 534 VNSLIDTLYKAGRGNEAWKIFHELKEMNL 562



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 190/469 (40%), Gaps = 55/469 (11%)

Query: 148  YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYT 207
            Y  N  +YN +  CL +N                G +   L +L  M    C PD+ +Y 
Sbjct: 597  YPPNLITYNTVLDCLCKN----------------GEVNYALGMLYNMTMKGCMPDLSSYN 640

Query: 208  AMIRVLAAERNLDACLRVWEEMKKDLV--------------------------------- 234
              +  L  E  L    R++ +MKK L                                  
Sbjct: 641  TALHGLVKEDRLTEAFRIFCQMKKVLAPDYTTLCTILPSFVKNGLMNEALHTLKEYILQP 700

Query: 235  --EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
              +AD  ++ +L+ G+ K   + +  E    +  + IL+D      LI  L    K  +A
Sbjct: 701  GSKADRSSFHSLMEGILKRAGMEKSIEFAENIALSRILLDDFFLSPLIRHLCKSKKALEA 760

Query: 293  CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
             +L+K     G     G YN++I GL      D A  LF    +    PD  T N +L  
Sbjct: 761  HELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDA 820

Query: 353  CAEMGRMDNFFKLLAQMEKLKF-SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS 411
              +  R+++  K+  +M    + S           LV K + +  A+D++ +L  +G+S 
Sbjct: 821  MGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLV-KSKMLYEAMDLYYKLMSEGFSP 879

Query: 412  VP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
             P  Y  L+  LL+ G+++ A  LF +M     + N   ++I +  +  +G+  + CE  
Sbjct: 880  TPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELF 939

Query: 471  NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
              +++    P + +Y  L   LC  G ++ ++   R  L  +   P    Y L I  + R
Sbjct: 940  QNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQ-LTELGLEPDLITYNLLIHGLGR 998

Query: 531  SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            SG  E+ + + N+M + G  PN    +++I  + K G   EA K++  L
Sbjct: 999  SGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEEL 1047



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 110/440 (25%), Positives = 190/440 (43%), Gaps = 24/440 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K KG   +  + NA+ Y L+++                GR+     +  +++     PD 
Sbjct: 453 KSKGIVPDVVAGNAVLYSLAKS----------------GRLGMAKRVFHELKSIGVCPDN 496

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT MI+  +   N D  ++V+ EM +     DV+A  +LI  L K GR     ++F E
Sbjct: 497 ITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHE 556

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +KE  +      Y  L+ GL  EGKV +   LL+++  + Y  +L  YN+++  LC+  +
Sbjct: 557 LKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGE 616

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            + A  +          PD S+ N  L    +  R+   F++  QM+K+   +A D    
Sbjct: 617 VNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKKV---LAPDYTTL 673

Query: 384 FEFLVGKEERIMM--ALDVFEE--LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
              L    +  +M  AL   +E  L+    +    ++ LM  +L+   ++K++     + 
Sbjct: 674 CTILPSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIEFAENIA 733

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              + ++    S  I+   +S   LEA E   K   +       +YN L  GL     ID
Sbjct: 734 LSRILLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLID 793

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A  L  + +  +   P EF Y L +  + +S   E +++V  EM  +G     V  + I
Sbjct: 794 VAEGLFSE-MKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTI 852

Query: 560 ISGMCKHGTLEEARKVFTNL 579
           ISG+ K   L EA  ++  L
Sbjct: 853 ISGLVKSKMLYEAMDLYYKL 872



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 137/308 (44%), Gaps = 24/308 (7%)

Query: 153  ASYNALAYCLSRNNLFRAADQV----------PE------LMDSQG---RIAEMLEILEK 193
             SYNAL   L   NL   A+ +          P+      ++D+ G   RI +ML++ ++
Sbjct: 777  GSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKE 836

Query: 194  MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
            M     +     Y  +I  L   + L   + ++ ++  +        Y  L+ GL K G+
Sbjct: 837  MHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGK 896

Query: 254  VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
            +    +LF EM + G   +RAIY +L+ G    G   K C+L +++VD G   D+  Y  
Sbjct: 897  IEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTV 956

Query: 314  IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
            +IG LC   + + +   F    +  L PD  T N L+      GR++    L   ME  K
Sbjct: 957  LIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDME--K 1014

Query: 374  FSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKK 430
              +A +L  +   +  +GKE +   A  ++EEL   G+  +V  YN L+G     G    
Sbjct: 1015 SGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDN 1074

Query: 431  ALYLFGKM 438
            A   +G+M
Sbjct: 1075 AFASYGQM 1082



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 106/489 (21%), Positives = 204/489 (41%), Gaps = 28/489 (5%)

Query: 116 RVTPDLVA-----EVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRA 170
           R  PD++A     + L        A K FH   K+        +YN L   L R      
Sbjct: 526 RCVPDVLAVNSLIDTLYKAGRGNEAWKIFHEL-KEMNLDPTDCTYNTLLAGLGR------ 578

Query: 171 ADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK 230
                     +G++ E++ +LE+M  N   P++  Y  ++  L     ++  L +   M 
Sbjct: 579 ----------EGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMT 628

Query: 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
                 D+ +Y T + GL K  R+     +F +MK+  +  D      ++   V  G + 
Sbjct: 629 MKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKKV-LAPDYTTLCTILPSFVKNGLMN 687

Query: 291 KACDLLKD-LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
           +A   LK+ ++  G +AD   ++S++ G+ +    +K+ +  E      +  D   ++PL
Sbjct: 688 EALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIEFAENIALSRILLDDFFLSPL 747

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY 409
           +    +  +     +L+ + E L  S+           +  E  I +A  +F E+K  G 
Sbjct: 748 IRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLGC 807

Query: 410 SSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
                 YN+++ A+ +   ++  L +  +M     E   ++++  I   V+S  + EA +
Sbjct: 808 DPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMD 867

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
            + K++     P+   Y  L  GL K G+I+ A  L  + L +    P    Y + +   
Sbjct: 868 LYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEML-DYGCKPNRAIYNILLNGY 926

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
             +G  EK+ E+   M  +G  P+    + +I  +C  G L ++   F  L E  L  E 
Sbjct: 927 RLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGL--EP 984

Query: 589 NTIVYDEIL 597
           + I Y+ ++
Sbjct: 985 DLITYNLLI 993



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 109/243 (44%), Gaps = 19/243 (7%)

Query: 146  KGYKHNFASYNALAYCLSRNN-LFRAADQVPELMDS------------------QGRIAE 186
            KGY+  + +YN +   L ++  L+ A D   +LM                     G+I +
Sbjct: 840  KGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIED 899

Query: 187  MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
              ++ ++M    CKP+   Y  ++       N +    +++ M    +  D+ +Y  LI 
Sbjct: 900  AEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIG 959

Query: 247  GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
             LC  GR+      FR++ E G+  D   Y +LI GL   G++ +A  L  D+  SG   
Sbjct: 960  ALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAP 1019

Query: 307  DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
            +L  YNS+I  L +  +  +A K++E  +++   P+  T N L+   +  G  DN F   
Sbjct: 1020 NLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASY 1079

Query: 367  AQM 369
             QM
Sbjct: 1080 GQM 1082



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 151/357 (42%), Gaps = 12/357 (3%)

Query: 202  DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
            D F  + +IR L   +       + ++ +   V     +Y  LI GL     +     LF
Sbjct: 740  DDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLF 799

Query: 262  REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             EMK  G   D   Y ++++ +    ++     + K++   GY +    YN+II GL + 
Sbjct: 800  SEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKS 859

Query: 322  KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            K   +A  L+   + +  +P   T  PLL    + G++++   L  +M  L +    +  
Sbjct: 860  KMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEM--LDYGCKPNRA 917

Query: 382  KFFEFL-----VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
             +   L      G  E++    ++F+ +  +G +  +  Y +L+GAL   G +  +L  F
Sbjct: 918  IYNILLNGYRLAGNTEKV---CELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYF 974

Query: 436  GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             ++  L LE + +++++ I     SG + EA    N + +    P++  YN L   L K 
Sbjct: 975  RQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKE 1034

Query: 496  GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
            G+   A  +  + L N    P  F Y   I     SG  +       +M   GCPPN
Sbjct: 1035 GKAAEAGKMYEELLKN-GWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPN 1090



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 16/199 (8%)

Query: 147  GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
            G K N A YN L       N +R A          G   ++ E+ + M      PD+ +Y
Sbjct: 911  GCKPNRAIYNILL------NGYRLA----------GNTEKVCELFQNMVDQGINPDIKSY 954

Query: 207  TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
            T +I  L     L+  L  + ++ +  +E D++ Y  LI GL + GR+     LF +M++
Sbjct: 955  TVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEK 1014

Query: 267  NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            +GI  +   Y  LI  L  EGK  +A  + ++L+ +G++ ++  YN++IGG       D 
Sbjct: 1015 SGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDN 1074

Query: 327  AYKLFEVTVQDDLAPDFST 345
            A+  +   +     P+ ST
Sbjct: 1075 AFASYGQMIVGGCPPNSST 1093


>gi|357444861|ref|XP_003592708.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355481756|gb|AES62959.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 1430

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 138/557 (24%), Positives = 227/557 (40%), Gaps = 113/557 (20%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNL--------- 167
           +TP LV  VL    +  +A  FFHWA  Q+ Y H   ++NA+A   SR++          
Sbjct: 55  LTPHLVESVLTRLRSWRVAQTFFHWASNQRHYHHTSFTFNAIASIFSRSHQTQPLIHLAK 114

Query: 168 -----------------------FRAADQVPELMDSQGRIA----------EMLEILEK- 193
                                   R   Q  +L D   R             +LE++ K 
Sbjct: 115 HLPNSSCSFTPGAFSFFLRCLGNLRLVHQANQLFDEMSRKGLFVPDRYSHNTLLEVISKC 174

Query: 194 -------MRRNLCKP-----DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
                  MR N  K      D +  T +I      +  D  L V++EM++   +  V   
Sbjct: 175 GLVDLMEMRLNEMKGFGWEFDKYTLTPVIVTYCNAQRFDQALSVYKEMEE---KGWVDER 231

Query: 242 VTLIMGLC--KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           V  +M LC  K G V +  EL   M E G+ +    + VLI G V E +V KA  L   +
Sbjct: 232 VCSMMALCFSKLGEVDKAFELVERMGECGMRLSEKTFCVLIHGFVKESRVDKALQLFDKM 291

Query: 300 -VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV------------ 346
             +  +  D+ +Y+ +IGGLC+ K  D+A  LF    +  + PD   +            
Sbjct: 292 RREDSFTPDVSLYDVLIGGLCKNKDTDRAISLFSEMKEFGVRPDIGILTKLISCFSDSKS 351

Query: 347 -----------------------NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
                                  N LL C    G MD  ++L+  M + K S  +D    
Sbjct: 352 MVSRLLEEIPEGEEDEQTLVLIYNALLTCYVNDGLMDEAYRLIRMMIQSKSSTDSD---- 407

Query: 384 FEFLVGKEERIMMALDV-FEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                  E R    +DV F+ +K   + ++  ++I++   L+  ++  AL LF  MR   
Sbjct: 408 -------ENR----MDVFFKTVKRMVFPNITSFSIVIDGFLKNDQLDLALSLFNDMRRFV 456

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
            +   L ++  I    +S  + ++ E   ++ E+   P+   YN +   LCK  ++ AA 
Sbjct: 457 DKPTILIYNNLIDSLCKSNRLEKSYELLREMKELGIEPTHFTYNSIYGCLCKRKDVSAAC 516

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
           +++++ +G+   GP      L +  +C  G   +  E L+ MTQ+G  P+ V  SA I G
Sbjct: 517 VMLKE-MGSCGHGPWIKHTTLLVKELCDHGRVIEACEFLDNMTQQGFLPDIVSYSAAIGG 575

Query: 563 MCKHGTLEEARKVFTNL 579
           +     ++ A K+F +L
Sbjct: 576 LVNIQEVDHAMKIFKDL 592



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/481 (21%), Positives = 201/481 (41%), Gaps = 42/481 (8%)

Query: 155 YNALAYCLSRNNLFRAADQVPELM----DSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           YNAL  C   + L   A ++  +M     S       +++  K  + +  P++ +++ +I
Sbjct: 374 YNALLTCYVNDGLMDEAYRLIRMMIQSKSSTDSDENRMDVFFKTVKRMVFPNITSFSIVI 433

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
                   LD  L ++ +M++ + +  ++ Y  LI  LCK  R+ + +EL REMKE GI 
Sbjct: 434 DGFLKNDQLDLALSLFNDMRRFVDKPTILIYNNLIDSLCKSNRLEKSYELLREMKELGIE 493

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
                Y  +   L     V  AC +LK++   G+   +     ++  LC   +  +A + 
Sbjct: 494 PTHFTYNSIYGCLCKRKDVSAACVMLKEMGSCGHGPWIKHTTLLVKELCDHGRVIEACEF 553

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK 390
            +   Q    PD  + +      A +G + N                             
Sbjct: 554 LDNMTQQGFLPDIVSYS------AAIGGLVNI---------------------------- 579

Query: 391 EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
            + +  A+ +F++L   G+   V  +N+L+  L ++    +A  LF ++    L  + ++
Sbjct: 580 -QEVDHAMKIFKDLWSHGHCPDVVCFNVLIRGLCKVNRFTEAEDLFHELVKRGLSPSVVT 638

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           +++ I C  ++G++ +A     ++ +  +VPSV  Y  L  G CK    D A++L ++  
Sbjct: 639 YNLFIDCWCKNGNVDKAMAHLFRMTKEDKVPSVVTYTTLVDGFCKEERPDDAILLFKEME 698

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
            N    P +  +   I  +C+     + +  L EM Q+   P+  I  A++S       L
Sbjct: 699 KN-GCPPNQITFMALIYGLCKCCRPTEALCYLREMQQKEMKPDSFIYVALLSAYLSDLNL 757

Query: 570 EEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKL 629
             A ++F  + +     +     Y  ++   +K    D   SG++    E KL    C+L
Sbjct: 758 TSAFEIFREMVDLGFFPKPLDKNYPTVVDAILKFCKDDRTSSGIQVLIEEGKLPMH-CEL 816

Query: 630 L 630
           L
Sbjct: 817 L 817


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 199/417 (47%), Gaps = 12/417 (2%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           + +L + +KM      PDV+  T +I        +D  L V  ++ K   + D   + TL
Sbjct: 73  STVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTL 132

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + GLC  G++    ++F +M   G   +   YG L+ GL  + ++ +A +L  +++  G 
Sbjct: 133 VRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGI 192

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  YNS+I  LC + ++     L    V+  + P+  ++N ++    + G++     
Sbjct: 193 SPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHD 252

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKG-YSSVPIYNILMGA 421
           ++  M  ++  V  D+  +   + G   R  M  A+ VF+ +   G   +V  YN L+  
Sbjct: 253 VVDMM--IQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLING 310

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQV 479
             +I  + KA+YLF +M    L  N++++S  I   CHV  G + +A    N+++   Q+
Sbjct: 311 YCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHV--GRLQDAIALFNEMVACGQI 368

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P++  Y+ L   LCK   +  AM L++   G+    P    Y + I  +CR+G+ E   +
Sbjct: 369 PNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLD-PDVQVYNIAIDGMCRAGDLEAARD 427

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
           + + +   G  P+    + +I G+CK G L+EA K+F  + E   L   N   Y+ I
Sbjct: 428 LFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLR--NGCTYNTI 482



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 186/414 (44%), Gaps = 45/414 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+I E L++ +KM     +P+V  Y  ++  L  +R L   L ++ EM    +  D+  Y
Sbjct: 140 GKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTY 199

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI  LC          L  EM ++ I+ +     ++++ L  EGKV +A D++  ++ 
Sbjct: 200 NSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQ 259

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  Y +++ G C   + D+A K+F++ V++    +  + N L+         + 
Sbjct: 260 GGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLI---------NG 310

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL-KGKGYSSVPIYNILMG 420
           + K+                          +RI  A+ +FEE+ + +   +   Y+ L+ 
Sbjct: 311 YCKI--------------------------QRIDKAMYLFEEMCRQELIPNTMTYSTLIH 344

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV- 479
            L  +G ++ A+ LF +M       N +++SI +    ++  + EA     K IE S + 
Sbjct: 345 GLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALL-KAIEGSNLD 403

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS---GPTEFKYALTILHVCRSGEAEK 536
           P V  YN    G+C+ G+++AA    RD   N+A     P  + + + I  +C+ G  ++
Sbjct: 404 PDVQVYNIAIDGMCRAGDLEAA----RDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDE 459

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             ++  EM + GC  N    + I  G+ ++     A ++   +  R    + +T
Sbjct: 460 ASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVST 513



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 5/239 (2%)

Query: 177 LMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD     +EM   +++ + M RN C  +V +Y  +I      + +D  + ++EEM +  
Sbjct: 272 LMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQE 331

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  + M Y TLI GLC  GR+     LF EM   G + +   Y +L++ L    ++ +A 
Sbjct: 332 LIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAM 391

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            LLK +  S    D+ +YN  I G+CR    + A  LF       L PD  T N ++   
Sbjct: 392 ALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGL 451

Query: 354 AEMGRMDNFFKLLAQM-EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS 411
            + G +D   KL  +M E              + L+ +  +   A+ + EE+  +G+S+
Sbjct: 452 CKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLL-QNNKTSRAIQLLEEMLARGFSA 509



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 167/372 (44%), Gaps = 13/372 (3%)

Query: 90  RFITDAFRKNQFQWGPQVVTELSKLRRVTP--DLVAEVLKVENNPTLAS--KFFHWAGKQ 145
           + + + F+ N   +G  ++  L K R++T   +L +E++    +P + +     H     
Sbjct: 151 KMVGEGFQPNVVTYG-TLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNL 209

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
             +KH     N +       N+  + + V + +  +G++ E  ++++ M +   +PDV  
Sbjct: 210 CEWKHVTTLLNEMVKSKIMPNVV-SLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVT 268

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y A++        +D  ++V++ M ++    +V++Y TLI G CK  R+ +   LF EM 
Sbjct: 269 YAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMC 328

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
              ++ +   Y  LI GL   G++  A  L  ++V  G   +L  Y+ ++  LC+  +  
Sbjct: 329 RQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLA 388

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +A  L +     +L PD    N  +      G ++    L + +      +  D+     
Sbjct: 389 EAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPR--GLQPDVWTHNI 446

Query: 386 FLVGKEERIMM--ALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM--RG 440
            + G  +R ++  A  +F E+   G   +   YN +   LL+  +  +A+ L  +M  RG
Sbjct: 447 MIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARG 506

Query: 441 LNLEVNSLSFSI 452
            + +V++ +  +
Sbjct: 507 FSADVSTTALLV 518


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 180/409 (44%), Gaps = 38/409 (9%)

Query: 181 QGRIAEMLEILEKM-RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +G+I   L++ E++ + N CKP +  YT +I     E  +D  L++ +EM    +E D  
Sbjct: 92  KGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTF 151

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +  GLCK G+V R  E  R +   G   D   Y +L+  L+ +GK  +    + ++
Sbjct: 152 TYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEI 211

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   ++  Y+ +I  LCR  + +++  L +V  +  L PD    +PL+      G++
Sbjct: 212 FSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKL 271

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNIL 418
           D                                   MA++  + +   G+   +  YN +
Sbjct: 272 D-----------------------------------MAIEFLDCMICDGFLPDIVNYNTI 296

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           M AL + G    A+ +FGK+  +    N  S++  +     SGD   A    ++++    
Sbjct: 297 MAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGI 356

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P V  YN L   LC+ G +D A+ L+ D L      P    Y   +L +C++   +  I
Sbjct: 357 DPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQ-PNIVSYKTVLLGLCKAHRIDDAI 415

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           EVL  M + GC PNE   + +I G+   G+  +A ++  +L     ++E
Sbjct: 416 EVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAMELANSLYIMNAISE 464



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 390 KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM-RGLNLEVNS 447
           K  RI  A  V + +K KG+S  V  +NI++G     G++  AL +F ++ +  N +   
Sbjct: 56  KANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTL 115

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
           ++++I I+ ++  G I EA +  ++++     P    YN +T+GLCK G++D A   VR 
Sbjct: 116 ITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRT 175

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            L +    P    Y + +  +   G+ ++  + ++E+   GC PN V  S +IS +C+ G
Sbjct: 176 -LNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDG 234

Query: 568 TLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
            +EE+  +   ++E+ L  +A    YD ++    ++   D+ +  L
Sbjct: 235 KIEESVNLVKVMKEKGLTPDA--YCYDPLIAAFCREGKLDMAIEFL 278



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 141/307 (45%), Gaps = 8/307 (2%)

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           LI+G      + KA  ++  L   G + D+  YN++I G C+  + + A  + +   +  
Sbjct: 16  LIKGFFNSRNIDKATRVMGILEKHG-KPDVFAYNAVISGFCKANRIESAKTVLDRMKRKG 74

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK---EERIM 395
            +PD  T N ++      G++D   K+  ++  LK +        +  L+     E  I 
Sbjct: 75  FSPDVVTHNIMIGTFCGKGKIDLALKVFEEL--LKDNNCKPTLITYTILIEAYILEGGID 132

Query: 396 MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
            AL + +E+  +G       YN++   L + G+V +A      +     + + ++++I +
Sbjct: 133 EALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILL 192

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
           +  +  G   E  +  ++I      P+V  Y+ L   LC+ G+I+ ++ LV+  +     
Sbjct: 193 RALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVK-VMKEKGL 251

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P  + Y   I   CR G+ +  IE L+ M  +G  P+ V  + I++ +CK+G  + A +
Sbjct: 252 TPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVE 311

Query: 575 VFTNLRE 581
           +F  L E
Sbjct: 312 IFGKLDE 318



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 99/231 (42%), Gaps = 4/231 (1%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +QG+  E  + + ++    C+P+V  Y+ +I  L  +  ++  + + + MK+  +  D  
Sbjct: 197 NQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAY 256

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI   C+ G++    E    M  +G L D   Y  ++  L   G    A ++   L
Sbjct: 257 CYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKL 316

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            + G   ++  YN+++  L       +A  +    +   + PD  T N L+ C    G +
Sbjct: 317 DEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMV 376

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG 408
           D    LLA M   +F    ++  +   L+G  K  RI  A++V   +   G
Sbjct: 377 DEAIGLLADMLSGRFQ--PNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENG 425


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/458 (24%), Positives = 202/458 (44%), Gaps = 53/458 (11%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           + GY+ +  ++  L + L ++N                + +E + ++E+M    C+PD+ 
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHN----------------KASEAVALVERMVVKGCQPDLV 206

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y A+I  L      D  L +  +M+K  +EADV+ Y T+I  LCK   V     LF EM
Sbjct: 207 TYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM 266

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              GI  D   Y  LI  L   G+   A  LL D+++     ++  +NS+I    +  + 
Sbjct: 267 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKL 326

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +A KLF+  +Q  + P+  T N L+       R+D                  + ++ F
Sbjct: 327 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD------------------EAQQIF 368

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
             +V K+                    V  YN L+    +  +V   + LF  M    L 
Sbjct: 369 TLMVSKD----------------CLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLV 412

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            N+++++  I    ++ D   A     +++     P++  YN L  GLCK G+++ A M+
Sbjct: 413 GNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKA-MV 471

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
           V + L      P  + Y +    +C++G+ E   ++   ++ +G  P+ +  + +ISG C
Sbjct: 472 VFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFC 531

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
           K G  EEA  +F  ++E   L ++ T  Y+ ++  H++
Sbjct: 532 KKGLKEEAYTLFIKMKEDGPLPDSGT--YNTLIRAHLR 567



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 142/321 (44%), Gaps = 32/321 (9%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQV----------------PELMDS---QGRIA 185
            KG + +  +Y++L  CL     +  A ++                  L+D+   +G++ 
Sbjct: 268 NKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLI 327

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E  ++ ++M +    P++  Y ++I        LD   +++  M       DV+ Y TLI
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G CK  +VV G ELFR+M   G++ +   Y  LI G         A  + K +V  G  
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVH 447

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            ++  YN+++ GLC+  + +KA  +FE   +  + PD  T N +     + G++++ + L
Sbjct: 448 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDL 507

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG------KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
              +  LK  V  D+  +   + G      KEE    A  +F ++K  G       YN L
Sbjct: 508 FCSLS-LK-GVKPDVIAYNTMISGFCKKGLKEE----AYTLFIKMKEDGPLPDSGTYNTL 561

Query: 419 MGALLEIGEVKKALYLFGKMR 439
           + A L  G+   +  L  +MR
Sbjct: 562 IRAHLRDGDKAASAELIKEMR 582



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 81/182 (44%), Gaps = 17/182 (9%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G   N  +YN L   L +N                G++ + + + E ++++  +PD++ Y
Sbjct: 445 GVHPNIMTYNTLLDGLCKN----------------GKLEKAMVVFEYLQKSKMEPDIYTY 488

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             M   +     ++    ++  +    V+ DV+AY T+I G CK G     + LF +MKE
Sbjct: 489 NIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKE 548

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           +G L D   Y  LI   + +G    + +L+K++    +  D   Y  ++  +    + DK
Sbjct: 549 DGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTY-GLVTDMLHDGRLDK 607

Query: 327 AY 328
            +
Sbjct: 608 GF 609


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/485 (24%), Positives = 213/485 (43%), Gaps = 56/485 (11%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G  HN  +Y+ L  C  R +      Q+P            L +L KM +   +P++   
Sbjct: 111 GIPHNHYTYSILINCFCRRS------QLPL----------ALAVLGKMMKLGYEPNIVTL 154

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           ++++      + +   + + ++M     + + + + TLI GL    +      L   M  
Sbjct: 155 SSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVA 214

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G   D   YGV++ GL   G    A +LL  +        + IYN+II GLC+ K  D 
Sbjct: 215 KGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDD 274

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-------EKLKFSVAAD 379
           A  LF+      + P+  T + L+ C    GR  +  +LL+ M       +   FS   D
Sbjct: 275 ALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALID 334

Query: 380 ----------LEKFFEFLVGK------------------EERIMMALDVFEELKGKG-YS 410
                      EK ++ +V +                   +R+  A  +FE +  K  + 
Sbjct: 335 AFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFP 394

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            V  YN L+    +   V++ + +F +M    L  N+++++I IQ   ++GD   A E  
Sbjct: 395 DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIF 454

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
            +++     P++  YN L  GLCK G+++ A M+V + L      PT + Y + I  +C+
Sbjct: 455 KEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA-MVVFEYLQRSKMEPTIYTYNIMIEGMCK 513

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA-- 588
           +G+ E   ++   ++ +G  P+ V  + +ISG C+ G+ EEA  +F  ++E   L  +  
Sbjct: 514 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGC 573

Query: 589 -NTIV 592
            NT++
Sbjct: 574 YNTLI 578



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/448 (22%), Positives = 198/448 (44%), Gaps = 22/448 (4%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           GY+ N  ++N L + L  +N                + +E + ++++M    C+PD+  Y
Sbjct: 181 GYQPNTVTFNTLIHGLFLHN----------------KASEAMALIDRMVAKGCQPDLVTY 224

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             ++  L    + D    +  +M++  +E  V+ Y T+I GLCK   +     LF+EM+ 
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            GI  +   Y  LI  L   G+   A  LL D+++     D+  ++++I    +  +  +
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A KL++  V+  + P   T + L+       R+D   ++   M  +      D+  +   
Sbjct: 345 AEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM--VSKHCFPDVVTYNTL 402

Query: 387 LVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           + G  K +R+   ++VF E+  +G   +   YNIL+  L + G+   A  +F +M    +
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             N ++++  +    ++G + +A      +      P++  YN + +G+CK G+++    
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L  + L      P    Y   I   CR G  E+   +  EM ++G  PN    + +I   
Sbjct: 523 LFCN-LSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRAR 581

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTI 591
            + G  E + ++   +R      +A+TI
Sbjct: 582 LRDGDREASAELIKEMRSCGFAGDASTI 609



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/477 (22%), Positives = 205/477 (42%), Gaps = 50/477 (10%)

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221
           LSRN L            S+ ++ + + +  +M ++   P +  ++ ++  +A     D 
Sbjct: 52  LSRNGL------------SELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDV 99

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
            + + E+M+   +  +   Y  LI   C+  ++     +  +M + G   +      L+ 
Sbjct: 100 VISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLN 159

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
           G     ++ +A  L+  +  +GY+ +   +N++I GL    +  +A  L +  V     P
Sbjct: 160 GYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQP 219

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVF 401
           D  T   ++    + G  D  F LL +ME+ K      +       + K + +  AL++F
Sbjct: 220 DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLF 279

Query: 402 EELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
           +E++ KG   +V  Y+ L+  L   G    A  L   M    +  +  +FS  I   V+ 
Sbjct: 280 KEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKE 339

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVASG 515
           G ++EA + ++++++ S  PS+  Y+ L  G C    +D A      M+ + C  +V + 
Sbjct: 340 GKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTY 399

Query: 516 PTEFK-----------------------------YALTILHVCRSGEAEKIIEVLNEMTQ 546
            T  K                             Y + I  + ++G+ +   E+  EM  
Sbjct: 400 NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS 459

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           +G PPN +  + ++ G+CK+G LE+A  VF  L+  K+  E     Y+ I+IE M K
Sbjct: 460 DGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM--EPTIYTYN-IMIEGMCK 513



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 155/324 (47%), Gaps = 36/324 (11%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------------PELMDS---QGRI 184
           + KG + N  +Y++L  CL     +  A ++                  L+D+   +G++
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 342

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  ++ ++M +    P +  Y+++I        LD   +++E M       DV+ Y TL
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK  RV  G E+FREM + G++ +   Y +LI+GL   G    A ++ K++V  G 
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  YN+++ GLC+  + +KA  +FE   +  + P   T N ++    + G++++ + 
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG------KEERIMMALDVFEELKGKGYSSVP---IY 415
           L   +  LK  V  D+  +   + G      KEE    A  +F+E+K  G  ++P    Y
Sbjct: 523 LFCNLS-LK-GVKPDVVAYNTMISGFCRKGSKEE----ADALFKEMKEDG--TLPNSGCY 574

Query: 416 NILMGALLEIGEVKKALYLFGKMR 439
           N L+ A L  G+ + +  L  +MR
Sbjct: 575 NTLIRARLRDGDREASAELIKEMR 598


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 184/376 (48%), Gaps = 40/376 (10%)

Query: 225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
           V+ EM K  +E +V+++  ++ GLCK G++ R  ++  +MK  G+  +   Y  LI+G  
Sbjct: 142 VYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYC 201

Query: 285 GEGKVGK---ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
             G++GK   A  +LK++V  G   +   YN +I G C+ +    A ++F    +  L P
Sbjct: 202 KMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRP 261

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVF 401
           +  T N L+      G++D    L  QM      V++DLE                    
Sbjct: 262 NVVTYNILINGLCSDGKVDEAVALRDQM------VSSDLE-------------------- 295

Query: 402 EELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
                    +V  +N+L+    +   V +A+ LF  M    ++ N+++++  I  + + G
Sbjct: 296 --------PNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDG 347

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
            + +A   +N +I+    P V+ YNCL  GLC+ G++ AA  L+ + +    S      Y
Sbjct: 348 RMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADV-VTY 406

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            + I  +C+ GE+ K +++L+EM ++G  P+ V  + ++ G C+ G L  A  V T + E
Sbjct: 407 NILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRM-E 465

Query: 582 RKLLTEANTIVYDEIL 597
           RK   +AN + ++ ++
Sbjct: 466 RK-GKQANVVTHNVLI 480



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 168/387 (43%), Gaps = 5/387 (1%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            +M  +  +M +   + +V ++  ++  L     L+    V E+MK   V  +V+ Y TL
Sbjct: 137 GDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTL 196

Query: 245 IMGLCKGGRV---VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
           I G CK GR+    +   + +EM   GI  +   Y +LI+G   +  V  A  +  ++  
Sbjct: 197 IDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQR 256

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G R ++  YN +I GLC   + D+A  L +  V  DL P+  T N L+    +   ++ 
Sbjct: 257 QGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNE 316

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMG 420
              L   MEK      A           K+ R+  A  ++  +  +G +  V  YN L+ 
Sbjct: 317 AINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIA 376

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L   G+VK A  L  +M    L  + ++++I I    + G+  +A +  +++ E    P
Sbjct: 377 GLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNP 436

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           S   YN L  G C+ G + AA+ +VR  +           + + I   C  G  E    +
Sbjct: 437 SHVTYNTLMDGYCREGNLRAAL-IVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGL 495

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHG 567
           LNEM + G  PN      I   M + G
Sbjct: 496 LNEMLERGLVPNRTTYEIIKEEMMEKG 522



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 153/337 (45%), Gaps = 14/337 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIR------VLAAERNLDACLRVWEEMKKDLVE 235
           G++    +++E M+     P+V  Y  +I        +      DA L+   EM    + 
Sbjct: 169 GKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILK---EMVAKGIC 225

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            + + Y  LI G CK   V     +F EM+  G+  +   Y +LI GL  +GKV +A  L
Sbjct: 226 PNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVAL 285

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
              +V S    ++  +N +I G C+ K  ++A  LF    +  + P+  T   L+    +
Sbjct: 286 RDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCK 345

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSS-V 412
            GRM++ F L   M  +   +  ++  +   + G  ++  +  A  +  E+  K  S+ V
Sbjct: 346 DGRMEDAFALYNMM--IDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADV 403

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             YNIL+ +L + GE +KA+ L  +M    L  + ++++  +  +   G++  A     +
Sbjct: 404 VTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTR 463

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           +    +  +V  +N L KG C  G ++ A  L+ + L
Sbjct: 464 MERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEML 500



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 108/234 (46%), Gaps = 17/234 (7%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE 176
           VT +++ +    + N + A + F    +Q G + N  +YN L   L              
Sbjct: 229 VTYNILIDGFCKDENVSGAMRVFGEMQRQ-GLRPNVVTYNILINGLC------------- 274

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
              S G++ E + + ++M  +  +P+V  +  +I      + ++  + ++ +M+K  V+ 
Sbjct: 275 ---SDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDP 331

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           + M Y TLI   CK GR+     L+  M + GI  + + Y  LI GL  +G V  A  L+
Sbjct: 332 NAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLM 391

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            ++V     AD+  YN +I  LC+  +  KA KL +   +  L P   T N L+
Sbjct: 392 NEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLM 445



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 149/372 (40%), Gaps = 56/372 (15%)

Query: 147 GYKHNFASYNAL--AYC-LSRNNLFRAADQVPELMDSQG-------------------RI 184
           G   N  +YN L   YC + R      AD + + M ++G                    +
Sbjct: 185 GVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENV 244

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           +  + +  +M+R   +P+V  Y  +I  L ++  +D  + + ++M    +E +V+ +  L
Sbjct: 245 SGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVL 304

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK   V     LF +M++ G+  +   Y  LI+    +G++  A  L   ++D G 
Sbjct: 305 INGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGI 364

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  YN +I GLCR      A  L    V   L+ D  T N L+    + G      K
Sbjct: 365 FPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVK 424

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE 424
           LL +M              FE                   KG   S V  YN LM     
Sbjct: 425 LLDEM--------------FE-------------------KGLNPSHVT-YNTLMDGYCR 450

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G ++ AL +  +M     + N ++ ++ I+     G + +A    N+++E   VP+   
Sbjct: 451 EGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTT 510

Query: 485 YNCLTKGLCKIG 496
           Y  + + + + G
Sbjct: 511 YEIIKEEMMEKG 522



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 3/116 (2%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L+DS   +G   + +++L++M      P    Y  ++     E NL A L V   M++  
Sbjct: 409 LIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKG 468

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
            +A+V+ +  LI G C  GR+   + L  EM E G++ +R  Y ++ E ++ +G V
Sbjct: 469 KQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKGFV 524


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 209/447 (46%), Gaps = 43/447 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG + E + +L K+    C+ D+ +Y A+++ L   +       + +EM +     +++ 
Sbjct: 194 QGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVT 253

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + TLI  LC+ G   R HE+  +M E+G   D  +Y  +I+G+  EG +  A ++L  + 
Sbjct: 254 FNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMP 313

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + ++  YN+++ GLC  +++ +A +L     Q D   D  T N L+    + G +D
Sbjct: 314 SYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVD 373

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
              +LL QM                                  L       V  Y  ++ 
Sbjct: 374 RVIELLEQM----------------------------------LSHGCMPDVITYTTVIN 399

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G + +A+ L   M     + N++S++I ++    +G  ++A E  +++I+    P
Sbjct: 400 GFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPP 459

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +   +N L   LCK G ++ A+ L++  L N  S P    Y+  I  + ++G+ E+ +E+
Sbjct: 460 NPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCS-PDLISYSTVIDGLGKAGKTEEALEL 518

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           LN M  +G  PN +I S+I   + + G + +  ++F N+++  + ++A  ++Y+ ++   
Sbjct: 519 LNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDA--VLYNAVISSL 576

Query: 601 MKKKTADLVLSGLKFFGLESKLKAKGC 627
            K+   D     + FF   + + + GC
Sbjct: 577 CKRWETD---RAIDFF---AYMVSNGC 597



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 175/382 (45%), Gaps = 6/382 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+ + +  ++R L     +   L V +EM           Y  ++   C+ G       +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              M   G  +D     +++  +  +G V +A  LL+ L   G  AD+  YN+++ GLC 
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            K++    +L +  V+ D AP+  T N L+      G  +   ++LAQM   +     D+
Sbjct: 229 AKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS--EHGCTPDI 286

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             +   + G  KE  + +A ++   +   G   +V  YN ++  L      K+A  L  +
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M   +  ++ ++F+I +    ++G +    E   +++    +P V  Y  +  G CK G 
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGL 406

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           ID A+ML++  + +    P    Y + +  +C +G      E++++M Q+GCPPN V  +
Sbjct: 407 IDEAVMLLKS-MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFN 465

Query: 558 AIISGMCKHGTLEEARKVFTNL 579
            +I+ +CK G +E+A ++   +
Sbjct: 466 TLINFLCKKGLVEQAIELLKQM 487



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 92/190 (48%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S GR  +  E++ +M +  C P+   +  +I  L  +  ++  + + ++M  +    D++
Sbjct: 438 SAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLI 497

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y T+I GL K G+     EL   M   GI  +  IY  +   L  EG+V K   +  ++
Sbjct: 498 SYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNI 557

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D+  R+D  +YN++I  LC+  + D+A   F   V +   P+ ST   L+   A  G  
Sbjct: 558 KDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLA 617

Query: 360 DNFFKLLAQM 369
               +LL+++
Sbjct: 618 KEAQELLSEL 627



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 125/290 (43%), Gaps = 1/290 (0%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S  R  E  E+L +M +  C  D   +  ++        +D  + + E+M       DV+
Sbjct: 333 SAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVI 392

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I G CK G +     L + M   G   +   Y ++++GL   G+   A +L+  +
Sbjct: 393 TYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQM 452

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G   +   +N++I  LC+    ++A +L +  + +  +PD  + + ++    + G+ 
Sbjct: 453 IQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKT 512

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNIL 418
           +   +LL  M     S    +       + +E R+   + +F+ +K     S   +YN +
Sbjct: 513 EEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAV 572

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           + +L +  E  +A+  F  M       N  ++++ I+     G   EA E
Sbjct: 573 ISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQE 622



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 128/293 (43%), Gaps = 52/293 (17%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           YN+++ G CR  Q   A +L        + P+  T  P++      GR+ +         
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAAAV---PVPPNAYTFFPVVRGLCTRGRIAD--------- 129

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSV-PIYNILMGALLEIGEVK 429
                                     AL+V +E+  KG + + P+Y++++ A    G  +
Sbjct: 130 --------------------------ALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFR 163

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
            ++ +   M      +++ + ++ +    E G + EA     K+        + +YN + 
Sbjct: 164 NSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVL 223

Query: 490 KGLC---KIGEIDAAM--MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           KGLC   + G+++  M  M+  DC  N+ +  T   Y      +CR+G  E++ EVL +M
Sbjct: 224 KGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY------LCRNGLFERVHEVLAQM 277

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           ++ GC P+  + + II G+CK G LE A ++   +    L  + N + Y+ +L
Sbjct: 278 SEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGL--KPNVVCYNTVL 328



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 19/178 (10%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQV----------PELMD---------SQGRIA 185
           Q+G   N  ++N L   L +  L   A ++          P+L+            G+  
Sbjct: 454 QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE 513

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E LE+L  M      P+   Y+++   L+ E  ++  +++++ +K   + +D + Y  +I
Sbjct: 514 EALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVI 573

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
             LCK     R  + F  M  NG + + + Y +LI+GL  EG   +A +LL +L   G
Sbjct: 574 SSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 5/142 (3%)

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V AYN +  G C+ G++ AA  L       V   P  + +   +  +C  G     +EVL
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAA----AVPVPPNAYTFFPVVRGLCTRGRIADALEVL 134

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL-LTEANTIVYDEILIEH 600
           +EM+ +GC P   +   I+   C+ G    + +V   +  +   L   N  +    + E 
Sbjct: 135 DEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQ 194

Query: 601 MKKKTADLVLSGLKFFGLESKL 622
                A  +L  L FFG E+ +
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADI 216



 Score = 39.7 bits (91), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 16/166 (9%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            KG   N   Y+++A  LSR                +GR+ +++++ + ++    + D  
Sbjct: 524 NKGISPNTIIYSSIACALSR----------------EGRVNKVIQMFDNIKDTTIRSDAV 567

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y A+I  L      D  +  +  M  +    +   Y  LI GL   G      EL  E+
Sbjct: 568 LYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
              G L    +    I     E    K  + L   VD+ Y+  + I
Sbjct: 628 CSRGALRKHLMRHFGISNCTQENGKQKCEENLTSAVDNNYKLPIEI 673


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 125/554 (22%), Positives = 237/554 (42%), Gaps = 37/554 (6%)

Query: 58  KWDPHYLPNQKTQSPPSDPKTFQLQRHL--SPIARFITDAFRKNQFQ-----WGPQVVTE 110
           K+ PH+L +  ++  P     F L+     +   +F+T A     F          ++T 
Sbjct: 42  KFHPHHLDSLSSRFTPQSASYFLLKSQFDQTLTLKFLTWARNHPFFDSHCKCLSLHILTR 101

Query: 111 LSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRA 170
             KL +    L  E+    ++P+ +S F         Y  + A ++ +    S  N+   
Sbjct: 102 F-KLYKTAQTLAQELALSASDPSGSSIFQCLKDSYHVYNSSSAVFDLMVKSYSHLNMIDQ 160

Query: 171 ADQVPELMDSQGRIAEML---------------------EILEKMRRNLCKPDVFAYTAM 209
           A     L  S G +  +L                     E+  +M R+   P+V+ Y  +
Sbjct: 161 AVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNIL 220

Query: 210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
           IR   +   L   L  + EM+++    +V+ Y TLI   CK GR+     L + M   G+
Sbjct: 221 IRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGM 280

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
             +   Y V+I GL  EG + +A ++L+++   G+  D   YN+++ G C+   F +A  
Sbjct: 281 QPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALV 340

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG 389
           +    V++ ++P   T   L+     M +  N  + +   ++++       E+ +  L+ 
Sbjct: 341 IHAEMVRNGVSPSVVTYTALI---NSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLID 397

Query: 390 KEER---IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
              R   +  A  +  E+   G+S SV  YN  +     +  +++AL +  +M    L  
Sbjct: 398 GFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAP 457

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           + +S+S  I      G++  A +   +++E    P    Y+ L +GLC++  +  A  L 
Sbjct: 458 DVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLS 517

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
           ++ L ++   P EF Y   I   C  G+  K + + +EM  +G  P+ V  S +I+G+ K
Sbjct: 518 QEML-DMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNK 576

Query: 566 HGTLEEARKVFTNL 579
                EA+++   L
Sbjct: 577 QARTREAKRLLFKL 590



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/465 (25%), Positives = 196/465 (42%), Gaps = 43/465 (9%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            KG + N  SYN +   L R                +G + E  EILE+M      PD  
Sbjct: 277 SKGMQPNLISYNVIINGLCR----------------EGSMKEAWEILEEMGYKGFTPDEV 320

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  ++     E N    L +  EM ++ V   V+ Y  LI  +CK   + R  E F +M
Sbjct: 321 TYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQM 380

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           +  G+  +   Y  LI+G   +G + +A  +L ++ +SG+   +  YN+ I G C +++ 
Sbjct: 381 RIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERM 440

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           ++A  + +  V+  LAPD  + + ++      G +D  F++  + E ++  V+ D   + 
Sbjct: 441 EEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQM--KQEMVEKGVSPDAVTYS 498

Query: 385 EFLVGKEE--RIMMALDVFEELKGKGYSSVP----IYNILMGALLEIGEVKKALYLFGKM 438
             + G  E  R+  A D+ +E+   G   +P     Y  L+ A    G++ KAL+L  +M
Sbjct: 499 SLIQGLCEMRRLTEACDLSQEMLDMG---LPPDEFTYTTLINAYCVEGDLNKALHLHDEM 555

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY-----NC------ 487
                  +++++S+ I    +     EA     K+I    VPS   Y     NC      
Sbjct: 556 IHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFK 615

Query: 488 ----LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
               L KG C  G +  A   V + +      P E  Y + I   CR G   K   +  E
Sbjct: 616 SVVALIKGFCMKGLMHEADR-VFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKE 674

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           M   G  P+ V    +I  + K G  EE  +V  +      L EA
Sbjct: 675 MIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEA 719



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/441 (23%), Positives = 197/441 (44%), Gaps = 23/441 (5%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G + + L    +M RN C P+V  Y  +I        +D    + + M    ++ +++
Sbjct: 226 SVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLI 285

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y  +I GLC+ G +    E+  EM   G   D   Y  L+ G   EG   +A  +  ++
Sbjct: 286 SYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM 345

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V +G    +  Y ++I  +C+ +  ++A + F+      L P+  T   L+   +  G +
Sbjct: 346 VRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLL 405

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYN 416
           +  +++L +M +  FS    +  +  F+ G    ER+  AL V +E+  KG +  V  Y+
Sbjct: 406 NEAYRILNEMTESGFS--PSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYS 463

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++      GE+ +A  +  +M    +  +++++S  IQ   E   + EAC+   ++++M
Sbjct: 464 TIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDM 523

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P    Y  L    C  G+++ A+ L  D + +    P    Y++ I  + +     +
Sbjct: 524 GLPPDEFTYTTLINAYCVEGDLNKALHL-HDEMIHKGFLPDAVTYSVLINGLNKQARTRE 582

Query: 537 IIEVLNEMTQEGCPPNEVI-------CS--------AIISGMCKHGTLEEARKVFTNLRE 581
              +L ++  E   P++V        CS        A+I G C  G + EA +VF ++ E
Sbjct: 583 AKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVE 642

Query: 582 RKLLTEANTIVYDEILIEHMK 602
           R    +    VY+ I+  H +
Sbjct: 643 RN--HKPGEAVYNVIIHGHCR 661


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 126/534 (23%), Positives = 230/534 (43%), Gaps = 68/534 (12%)

Query: 119 PDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM 178
           P  VA VLK + +P  A   F+   K+ G+KH F +Y  +   L  +  F A ++V   M
Sbjct: 7   PKHVAAVLKYQKDPLKALSIFNSVKKEDGFKHTFLTYKRMIEKLGFHGEFDAMERVLMEM 66

Query: 179 --------------------DSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
                                 +G++ E +++ E+M    C+P +F+Y A++ +L     
Sbjct: 67  RLNVDNSLLEGVYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGY 126

Query: 219 LDACLRVWEEMKKDLVEADV-----------------------------------MAYVT 243
            +   +V+  MK + +  DV                                   + Y T
Sbjct: 127 FNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCT 186

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I G  +    V  +ELF +M   GI    A +  L+  L  +G + +   LL  ++ +G
Sbjct: 187 VISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNG 246

Query: 304 YRADLGIYNSIIGGLCRVKQFDKA-YKLFEV------TVQDDLAPDFSTVNPLLVCCAEM 356
              +L  +N  I GLCR    + A  K+ E        V   L PD  T N ++   +++
Sbjct: 247 VCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKV 306

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVP 413
           G++ +  ++L   +   F    D   +   ++G  ++  I  AL +FEE  GKG   S+ 
Sbjct: 307 GKIQDASRILKDAKFKGF--VPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIV 364

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           +YN L+  L + G V KAL L   M    +  +  ++++ I    + G + +A    N  
Sbjct: 365 LYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAA 424

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           I    +P +  +N L  G CK  ++D A+ ++ D + +    P    Y   +  +C++ +
Sbjct: 425 IAKGYLPDIFTFNTLIDGYCKRLKMDNAIGIL-DSMWSHGVTPDVITYNSILNGLCKAAK 483

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
            E ++E    + ++GC PN +  + +I  +CK   + EA  +   +R R L+ +
Sbjct: 484 PEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPD 537



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/471 (23%), Positives = 201/471 (42%), Gaps = 31/471 (6%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           N  ++N     L R  +   A+          ++ E    L KM     +PD F Y  +I
Sbjct: 250 NLFTFNIFIQGLCRKGVLEGANS---------KVVEAENYLHKMVNKGLEPDDFTYNTII 300

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
              +    +    R+ ++ K      D   Y +LI+G+C+ G +     LF E    G+ 
Sbjct: 301 YGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLK 360

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
               +Y  LI+GL  +G V KA  L+ D+   G   D+  YN +I GLC++     A  L
Sbjct: 361 PSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNL 420

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG- 389
               +     PD  T N L+    +  +MDN   +L  M      V  D+  +   L G 
Sbjct: 421 LNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSM--WSHGVTPDVITYNSILNGL 478

Query: 390 ----KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
               K E +M   + F+ +  KG   ++  YNIL+ +L +  +V +AL L  ++R   L 
Sbjct: 479 CKAAKPEDVM---ETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLI 535

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PSVAAYNCLTKGLCKIGEIDAAMM 503
            + +SF   I     +GD+ EA +   ++ +  ++  +VA YN +     +  ++D A  
Sbjct: 536 PDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQK 595

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L  + +G+    P  + Y + I   C+ G      + L +  + G  P+      +I+ +
Sbjct: 596 LFHE-MGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCL 654

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYD---------EILIEHMKKKT 605
           C    + EA  +   +    ++ EA   ++D         +I++E + KK+
Sbjct: 655 CVQHRVHEAVGIVHLMVRTGVVPEAVVTIFDADKKAVAAPKIIVEDLLKKS 705


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 199/422 (47%), Gaps = 15/422 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ + LEI+++M     +PD   Y+ +I      +N+     + +EMKK  +   V+ Y
Sbjct: 369 GKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTY 428

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I GLC+ G +   + + REM  NG+  +  +Y  L+     EG+V ++  +L+ + +
Sbjct: 429 SVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMRE 488

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM-- 359
            G   D+  YNS+I G C+ K+ ++A       ++  L P+  T    +   ++ G M  
Sbjct: 489 QGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEI 548

Query: 360 -DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFE-ELKGKGYSSVPIY 415
            D +F      E L   V  ++  +   + G  KE  +  A  VF   L  +    V  Y
Sbjct: 549 ADRYFN-----EMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTY 603

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           ++L+  L   G++ +A  +F +++   L  N+ +++  I    + G++ +A +   ++  
Sbjct: 604 SVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCI 663

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P +  YN L  GLCK GEI+ A  L  D  G   + P    YA  +   C+S    
Sbjct: 664 KGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLT-PNCVTYAAMVDGYCKSKNPT 722

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
              ++L EM   G PP+  I + I++  CK    E+A  +F  + E+     A+T+ ++ 
Sbjct: 723 AAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF---ASTVSFNT 779

Query: 596 IL 597
           ++
Sbjct: 780 LI 781



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 132/560 (23%), Positives = 244/560 (43%), Gaps = 40/560 (7%)

Query: 76  PKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPD------LVAEVLKVE 129
           PK F+ +  L      + D  + N+ +   +V   +    +V PD      +++   KV 
Sbjct: 171 PKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCA-HKVLPDVYTYTNMISAHCKVG 229

Query: 130 NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQ----------VPEL-- 177
           N              +KG   N  +YN +   L R  L   A +          VP+L  
Sbjct: 230 NVKDAKRVLLEMG--EKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYT 287

Query: 178 ---------MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
                    M+ + R A+++ +LE +   L KP+   Y A+I     + +++   R+ +E
Sbjct: 288 YDILINGFCMEKRSREAKLM-LLEMIDVGL-KPEPITYNALIDGFMRQGDIEQAFRIKDE 345

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           M    +EA+++ + TL+ G+CK G++ +  E+ +EM E G+  D   Y +LIEG      
Sbjct: 346 MVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQN 405

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           + +A +LL ++        +  Y+ II GLCR         +    V + L P+      
Sbjct: 406 MARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTT 465

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALD-VFEELK 405
           L+   A+ GR++    +L +M +    +  D+  +   ++G  K +R+  A   + E L+
Sbjct: 466 LMTAHAKEGRVEESRMILERMREQ--GILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLE 523

Query: 406 GKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            +   +   Y   +    + GE++ A   F +M    +  N   ++  I+ H + G++ E
Sbjct: 524 RRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTE 583

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A      I+    +  V  Y+ L  GL + G++  A  +  + L      P  F Y   I
Sbjct: 584 AFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSE-LQEKGLLPNAFTYNSLI 642

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
              C+ G  +K  ++L EM  +G  P+ V  + +I G+CK G +E A+ +F ++  R L 
Sbjct: 643 SGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGL- 701

Query: 586 TEANTIVYDEILIEHMKKKT 605
              N + Y  ++  + K K 
Sbjct: 702 -TPNCVTYAAMVDGYCKSKN 720



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/488 (23%), Positives = 220/488 (45%), Gaps = 26/488 (5%)

Query: 154 SYNALAYCLSRNNLFRAADQV---PELMDSQGRIAEML-----EILEKMRRNLCK----P 201
           SY  + + +   N+F         P L+     + ++L     E+  K+   +C     P
Sbjct: 154 SYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLP 213

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           DV+ YT MI       N+    RV  EM +     +++ Y  +I GLC+   +    EL 
Sbjct: 214 DVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELK 273

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           R M + G++ D   Y +LI G   E +  +A  +L +++D G + +   YN++I G  R 
Sbjct: 274 RSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQ 333

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
              ++A+++ +  V   +  +    N LL    + G+M+   +++ +M  ++  V  D +
Sbjct: 334 GDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM--MEKGVEPDSQ 391

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
            +   + G  + + +  A ++ +E+K +  + +V  Y++++  L   G ++    +  +M
Sbjct: 392 TYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREM 451

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
               L+ N++ ++  +  H + G + E+     ++ E   +P V  YN L  G CK   +
Sbjct: 452 VMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRM 511

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           + A   + + L      P    Y   I    ++GE E      NEM   G  PN  I +A
Sbjct: 512 EEARTYLMEMLERRLR-PNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTA 570

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGL 618
           +I G CK G + EA  VF  +  R++L +  T     +LI  + +          + FG+
Sbjct: 571 LIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTY---SVLIHGLSRNG-----KMHEAFGI 622

Query: 619 ESKLKAKG 626
            S+L+ KG
Sbjct: 623 FSELQEKG 630



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 191/404 (47%), Gaps = 7/404 (1%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           IL +M  N  KP+   YT ++   A E  ++    + E M++  +  DV  Y +LI+G C
Sbjct: 447 ILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFC 506

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K  R+        EM E  +  +   YG  I+G    G++  A     +++  G   ++G
Sbjct: 507 KAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVG 566

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
           IY ++I G C+     +A+ +F   +   +  D  T + L+   +  G+M   F + +++
Sbjct: 567 IYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSEL 626

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
           ++    +  +   +   + G  K+  +  A  + EE+  KG +  +  YNIL+  L + G
Sbjct: 627 QEK--GLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAG 684

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
           E+++A  LF  + G  L  N ++++  +  + +S +   A +   +++     P    YN
Sbjct: 685 EIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYN 744

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            +    CK  + + A+ L ++ L    +    F     I   C+SG+ ++   +L EM +
Sbjct: 745 VILNFCCKEEKFEKALDLFQEMLEKGFASTVSFN--TLIEGYCKSGKLQEANHLLEEMIE 802

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +   PN V  +++I   CK G + EA++++  ++ER ++  A T
Sbjct: 803 KQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKT 846



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 175/383 (45%), Gaps = 5/383 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+V  YTA+I     E N+     V+  +    V  DV  Y  LI GL + G++     +
Sbjct: 563 PNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGI 622

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F E++E G+L +   Y  LI G   +G V KA  LL+++   G   D+  YN +I GLC+
Sbjct: 623 FSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCK 682

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             + ++A  LF+      L P+  T   ++    +       F+LL +M        A +
Sbjct: 683 AGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFI 742

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
                    KEE+   ALD+F+E+  KG++S   +N L+    + G++++A +L  +M  
Sbjct: 743 YNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIE 802

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
                N ++++  I  + ++G + EA     ++ E + +P+   Y  L  G   IG +  
Sbjct: 803 KQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSE 862

Query: 501 AMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
              L  +    VA G  P +  Y + I   CR G   +  ++ +E+  +G P +     A
Sbjct: 863 VSALFEEM---VAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDA 919

Query: 559 IISGMCKHGTLEEARKVFTNLRE 581
           +I  +CK     E  K+   + E
Sbjct: 920 LIQALCKKEEFFEVLKLLNEIGE 942



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 119/536 (22%), Positives = 227/536 (42%), Gaps = 82/536 (15%)

Query: 99  NQFQWGPQVVTELSKL-RRVTPDLVAEVLKVEN---NPTLASKFFHWAGKQKGY---KHN 151
           N   W  Q + E S + +++  D++  V+ ++N   +P     FF+W+  + G    + +
Sbjct: 35  NSHNW--QALMESSDIPKKLNTDIIRSVI-LQNQVGDPKRLLNFFYWSQHKMGTSTAQQD 91

Query: 152 FASYNALAY----------------CLSRNN------------LFRAADQVPE------L 177
               +ALA                 C+ RN+             +R+ +  P       L
Sbjct: 92  LDVLSALAVNLCNSNWYGPASDLIKCIIRNSDSPLAVLGSIVKCYRSCNGSPNSVIFDML 151

Query: 178 MDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
           MDS    G + E + +    +    +P + +  +++  L     ++   +V++ M    V
Sbjct: 152 MDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKV 211

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
             DV  Y  +I   CK G V     +  EM E G   +   Y V+I GL     + +A +
Sbjct: 212 LPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIE 271

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           L + +VD G   DL  Y+ +I G C  K+  +A  +    +   L P+  T N L+    
Sbjct: 272 LKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALI---- 327

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI 414
                D F +              D+E+ F     K+E +   ++          +++ I
Sbjct: 328 -----DGFMR------------QGDIEQAFRI---KDEMVACGIE----------ANLII 357

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           +N L+  + + G+++KAL +  +M    +E +S ++S+ I+ H    ++  A E  +++ 
Sbjct: 358 WNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMK 417

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           +    P+V  Y+ +  GLC+ G +     ++R+ + N    P    Y   +    + G  
Sbjct: 418 KRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMN-GLKPNAVVYTTLMTAHAKEGRV 476

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           E+   +L  M ++G  P+    +++I G CK   +EEAR     + ER+L   A+T
Sbjct: 477 EESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHT 532



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 102/445 (22%), Positives = 191/445 (42%), Gaps = 40/445 (8%)

Query: 129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEML 188
           E N T A   F +   ++    +  +Y+ L + LSRN                G++ E  
Sbjct: 578 EGNVTEAFSVFRFILSRR-VLQDVQTYSVLIHGLSRN----------------GKMHEAF 620

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
            I  +++     P+ F Y ++I     + N+D   ++ EEM    +  D++ Y  LI GL
Sbjct: 621 GIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGL 680

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           CK G + R   LF +++  G+  +   Y  +++G         A  LL++++  G   D 
Sbjct: 681 CKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDA 740

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
            IYN I+   C+ ++F+KA  LF+  ++   A   S  N L+    + G++     LL +
Sbjct: 741 FIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVS-FNTLIEGYCKSGKLQEANHLLEE 799

Query: 369 M-EKLKFSVAADLEKFFEF-----LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422
           M EK             +      ++G+ +R+ + +      +     +   Y  L+   
Sbjct: 800 MIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQ-----ERNVMPTAKTYTSLLHGY 854

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
             IG + +   LF +M    +E + +++ + I  +   G+++EAC+  ++I+      SV
Sbjct: 855 HNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSV 914

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR-----SGEAEKI 537
           AAY+ L + LCK  E    + L+ +       G + F+  L    V       +G  ++ 
Sbjct: 915 AAYDALIQALCKKEEFFEVLKLLNEI------GESGFRLGLPTCSVIARGFQIAGNMDEA 968

Query: 538 IEVLNEMTQEGCPPNEVICSAIISG 562
            EVL  M + G   N      ++ G
Sbjct: 969 AEVLRSMVKFGWVSNTTSLGDLVDG 993



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 119/300 (39%), Gaps = 26/300 (8%)

Query: 115 RRVTPDLVAEVLKVEN-----NPTLASKFFHWAGKQKGYKHNFASYNA-LAYCLSRNNLF 168
           R +TP+ V     V+      NPT A +        +G   +   YN  L +C       
Sbjct: 699 RGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEM-LLRGVPPDAFIYNVILNFCCKEEKFE 757

Query: 169 RAADQVPELMDS-----------------QGRIAEMLEILEKMRRNLCKPDVFAYTAMIR 211
           +A D   E+++                   G++ E   +LE+M      P+   YT++I 
Sbjct: 758 KALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLID 817

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
                  +    R+W EM++  V      Y +L+ G    G +     LF EM   GI  
Sbjct: 818 HNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEP 877

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           D+  Y V+I+    EG V +AC L  +++  G    +  Y+++I  LC+ ++F +  KL 
Sbjct: 878 DKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLL 937

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE 391
               +        T + +       G MD   ++L  M  +KF   ++     + + G +
Sbjct: 938 NEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSM--VKFGWVSNTTSLGDLVDGNQ 995


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 205/444 (46%), Gaps = 11/444 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q R  E   +L++M     KPD  AYTA+I     + ++    +V EEM    ++ +   
Sbjct: 315 QKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFT 374

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI GLCK G + +  +LF EM   GI  D   Y  LIEG      + KA +LL ++ 
Sbjct: 375 YYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIK 434

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                A+  +  +I+ GLC      +A +LF+  +   L P+      ++    + GR +
Sbjct: 435 KENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFE 494

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
              K+L  M+    S   D+  +   ++G  K  ++        E+  KG   +V  Y  
Sbjct: 495 EAIKILGVMKDQGLS--PDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGA 552

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
            +      GE++ A   F +M    +  N +  +  I  + + G+  +A      +++  
Sbjct: 553 FIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQG 612

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
            +P V  ++ L  GL K G++  AM +  + L +    P  F Y   I ++C+ G+ +  
Sbjct: 613 VLPDVQTHSVLIHGLSKNGKLQEAMGVFSELL-DKGLVPDVFTYTSLISNLCKEGDLKAA 671

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            E+ ++M ++G  PN V  +A+I+G+CK G + +AR++F  + E+ L    N++ Y  I+
Sbjct: 672 FELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGL--ARNSVTYSTII 729

Query: 598 IEHMKKKT---ADLVLSGLKFFGL 618
             + K      A  +  G+K  G+
Sbjct: 730 AGYCKSANLTEAFQLFHGMKLVGV 753



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 185/406 (45%), Gaps = 6/406 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + +  ++  +M     KPD+  Y  +I      +N++    +  E+KK+ + A+    
Sbjct: 386 GDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMC 445

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++ GLC  G + R +ELF+EM   G+  +  IY  +++GLV EG+  +A  +L  + D
Sbjct: 446 GAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKD 505

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  YN++I G C+  + ++        +   L P+  T    +      G M  
Sbjct: 506 QGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQA 565

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNIL 418
             +   +M  L   +A +     + + G  K+     A   F  +  +G    V  +++L
Sbjct: 566 AERSFIEM--LDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVL 623

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L + G++++A+ +F ++    L  +  +++  I    + GD+  A E H+ + +   
Sbjct: 624 IHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGI 683

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P++  YN L  GLCK+GEI  A  L  D +           Y+  I   C+S    +  
Sbjct: 684 NPNIVTYNALINGLCKLGEIAKARELF-DGIPEKGLARNSVTYSTIIAGYCKSANLTEAF 742

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           ++ + M   G PP+  +  A+I G CK G  E+A  +F  + E  +
Sbjct: 743 QLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGI 788



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 179/424 (42%), Gaps = 42/424 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E   +L  M    C P++  Y+ +I  L    ++D  L +   M    +  D   Y
Sbjct: 246 GKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIY 305

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G C+  R   G  +  EM   G+  D   Y  LI G V +  +G A  + +++  
Sbjct: 306 ATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFA 365

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              + +   Y ++I GLC++   +KA  LF       + PD  T N L+         + 
Sbjct: 366 RKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLI---------EG 416

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
           ++K+             ++EK +E L+  ++         E L    Y    I N     
Sbjct: 417 YYKV------------QNMEKAYELLIEIKK---------ENLTANAYMCGAIVN----G 451

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L   G++ +A  LF +M    L+ N + ++  ++  V+ G   EA +    + +    P 
Sbjct: 452 LCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPD 511

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIE 539
           V  YN +  G CK G+++     + +    +A G  P  + Y   I   CR+GE +    
Sbjct: 512 VFCYNTVIIGFCKAGKMEEGKSYLVEM---IAKGLKPNVYTYGAFIHGYCRAGEMQAAER 568

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
              EM   G  PN+VIC+ +I G CK G   +A   F  + ++ +L +  T     +LI 
Sbjct: 569 SFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQT---HSVLIH 625

Query: 600 HMKK 603
            + K
Sbjct: 626 GLSK 629



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 113/492 (22%), Positives = 205/492 (41%), Gaps = 59/492 (11%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEM 187
           G K N   Y  +   L +   F  A ++  +M  QG                   ++ E 
Sbjct: 472 GLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEG 531

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
              L +M     KP+V+ Y A I        + A  R + EM    +  + +    LI G
Sbjct: 532 KSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDG 591

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            CK G   +    FR M + G+L D   + VLI GL   GK+ +A  +  +L+D G   D
Sbjct: 592 YCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPD 651

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VC-CAEMGRMDNFFK 364
           +  Y S+I  LC+      A++L +   +  + P+  T N L+  +C   E+ +    F 
Sbjct: 652 VFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFD 711

Query: 365 LLAQMEKLKFSV-----------AADLEKFFEFLVG---------------------KEE 392
            + +    + SV           +A+L + F+   G                     K  
Sbjct: 712 GIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAG 771

Query: 393 RIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
               AL +F  +  +G +S P +N L+    ++G++ +A  L   M   ++  N ++++I
Sbjct: 772 NTEKALSLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTI 831

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
            I+ H   G+I EA +   ++ + + +P+V  Y  L  G  +IG       L  +    V
Sbjct: 832 LIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEM---V 888

Query: 513 ASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
           A G  P +  +++ +    + G   K ++++++M  EG    + + + +I  +CKH  L 
Sbjct: 889 ARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLS 948

Query: 571 EARKVFTNLRER 582
           E  KV   + ++
Sbjct: 949 EVLKVLDEVEKQ 960



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 176/407 (43%), Gaps = 46/407 (11%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +   G++ E + +  ++      PDVF YT++I  L  E +L A   + ++M K  +  +
Sbjct: 627 LSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPN 686

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           ++ Y  LI GLCK G + +  ELF  + E G+  +   Y  +I G      + +A  L  
Sbjct: 687 IVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFH 746

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA--PDFSTVNPLLVCCAE 355
            +   G   D  +Y ++I G C+    +KA  LF   V++ +A  P F+ +         
Sbjct: 747 GMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNAL--------- 797

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI- 414
              +D FFKL                           +++ A  + E++     +   + 
Sbjct: 798 ---IDGFFKL--------------------------GKLIEAYQLVEDMVDNHITPNHVT 828

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y IL+     +G +K+A  LF +M+  N+  N L+++  +  +   G   E     ++++
Sbjct: 829 YTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMV 888

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL--HVCRSG 532
                P   A++ +     K G    A+ LV D L   + G    K   TIL   +C+  
Sbjct: 889 ARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDML---SEGVNVCKNLYTILIDALCKHN 945

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
              ++++VL+E+ ++G   +   C  ++    + G  +EA +V  ++
Sbjct: 946 NLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESM 992



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 123/559 (22%), Positives = 223/559 (39%), Gaps = 60/559 (10%)

Query: 68  KTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKL-RRVTPDLVAEVL 126
           K+ S  ++  T Q    +  I   +       Q  W  Q + E S L  ++ PD+V  V+
Sbjct: 28  KSNSFSTNADTNQSDNTVKEITSLL------KQKNW--QFLIESSPLPNKLNPDVVFLVI 79

Query: 127 KVEN--NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLF-RAADQVPELMDSQGR 183
           K     +P     FF+W   +  +  N ++++ L+  L  + LF  AA+ +  ++D++  
Sbjct: 80  KQNQVIDPKRLHGFFNWVNSRTVFSQNLSTFSILSLILCNSGLFGNAANVLERMIDTRNP 139

Query: 184 IAEMLEILEKMRRNL----CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
             ++L+ + K  + +        V  +  +I +   +  L+  + V+   K +     + 
Sbjct: 140 HVKILDSIIKCYKEINGSSSSSSVVVFEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLA 199

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
              +L   L KG RV    ++++ M    I+ D   Y  LI      GKV +   +L D+
Sbjct: 200 CCNSLSKDLLKGNRVELFWKVYKGML-GAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDM 258

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            + G   +L  Y+ +I GLCR    D+A +L        L PD      L+       R 
Sbjct: 259 EEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRS 318

Query: 360 DNFFKLLAQMEKL--------------KFSVAADLEKFFEFLVGKEE------------- 392
                +L +M  +               F   +D+   F+    KEE             
Sbjct: 319 TEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQV---KEEMFARKIKLNTFTY 375

Query: 393 -----------RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
                       +  A D+F E+   G    +  YN L+    ++  ++KA  L  +++ 
Sbjct: 376 YALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKK 435

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
            NL  N+      +      GD+  A E   ++I     P++  Y  + KGL K G  + 
Sbjct: 436 ENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEE 495

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A+ ++   + +    P  F Y   I+  C++G+ E+    L EM  +G  PN     A I
Sbjct: 496 AIKIL-GVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFI 554

Query: 561 SGMCKHGTLEEARKVFTNL 579
            G C+ G ++ A + F  +
Sbjct: 555 HGYCRAGEMQAAERSFIEM 573



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 56/121 (46%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR +EM  + ++M     KPD  A++ M+     E N    L++ ++M  + V      Y
Sbjct: 875 GRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLY 934

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI  LCK   +    ++  E+++ G  +  A  G L+      G+  +A  +L+ +V 
Sbjct: 935 TILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESMVR 994

Query: 302 S 302
           S
Sbjct: 995 S 995


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 192/427 (44%), Gaps = 41/427 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +   LE+LE+M+     PD F +T +I  +A   +LD  +     M  D    +V+ Y
Sbjct: 4   GDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCD---PNVVTY 60

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI    +  ++    +L  EM+E G   +   Y VL++ L     VG A D++K +++
Sbjct: 61  TALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIE 120

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G+  ++  +NS++ G C+    D A KL  + V   + P+  T + L+         D 
Sbjct: 121 GGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALI---------DG 171

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
             K                +KF E           A +V EE+K  G +     Y+ L+ 
Sbjct: 172 LCK---------------SQKFLE-----------AKEVLEEMKASGVTPDAFTYSALIH 205

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L +  ++++A  +  +M G     + + +S  I    +SG +LEA +   ++ +  + P
Sbjct: 206 GLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSP 265

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  YN +  GLCK+G+I  A +++     +    P    Y+  I  +C+S    +  ++
Sbjct: 266 DVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKL 325

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           L+ M + GC P+ V  + II G+CK G LEEA  +   +  ++     N + Y  ++   
Sbjct: 326 LDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGM--KRAGCAPNVVTYTTLISGL 383

Query: 601 MKKKTAD 607
            K +  D
Sbjct: 384 CKARKVD 390



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/421 (22%), Positives = 206/421 (48%), Gaps = 6/421 (1%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
           ++ +R   C P+V  YTA+I   A  + L+  +++ EEM++     +++ Y  L+  LCK
Sbjct: 45  MDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 104

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
              V    ++ ++M E G   +   +  L++G    G V  A  LL  +V  G R ++  
Sbjct: 105 LSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVT 164

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           Y+++I GLC+ ++F +A ++ E      + PD  T + L+    +  +++   ++L +M 
Sbjct: 165 YSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMA 224

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVK 429
               +    +         K  +++ A    +E++ +  S  V  YN ++  L ++G++ 
Sbjct: 225 GSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIA 284

Query: 430 KALYLFGKMR-GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
           +A  +  +M+   ++  + +++S  I    +S  ++EA +  +++ +    P V  Y  +
Sbjct: 285 EAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTI 344

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
             GLCK G ++ A  L++  +      P    Y   I  +C++ + ++   V+ EM   G
Sbjct: 345 IDGLCKCGRLEEAEYLLQG-MKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAG 403

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADL 608
           CPPN V  + +++G+C  G ++EA+++   +++ +     +   Y  I+   M   ++DL
Sbjct: 404 CPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALM---SSDL 460

Query: 609 V 609
           V
Sbjct: 461 V 461



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 179/404 (44%), Gaps = 26/404 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           +++G   N  +YN L   L + ++  AA                 ++++KM      P+V
Sbjct: 84  RERGCPPNLVTYNVLVDALCKLSMVGAAQ----------------DVVKKMIEGGFAPNV 127

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             + +++       N+D   ++   M    +  +V+ Y  LI GLCK  + +   E+  E
Sbjct: 128 MTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEE 187

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           MK +G+  D   Y  LI GL    K+ +A  +L+ +  SG   D+ +Y+SII   C+  +
Sbjct: 188 MKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGK 247

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
             +A K  +   +   +PD  T N ++    ++G++     +L QM++    V  D+  +
Sbjct: 248 LLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQE-SGDVLPDVVTY 306

Query: 384 FEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
              + G  K + ++ A  + + +   G +  V  Y  ++  L + G +++A YL   M+ 
Sbjct: 307 STVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKR 366

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
                N ++++  I    ++  + EA     ++      P++  YN +  GLC  G I  
Sbjct: 367 AGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKE 426

Query: 501 AMMLV-RDCLGNVASGPTEFKYALTILHVCRSG----EAEKIIE 539
           A  LV R   G     P    Y  TI++   S     EAE+++E
Sbjct: 427 AQQLVQRMKDGRAECSPDAATYR-TIVNALMSSDLVQEAEQLLE 469



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 130/284 (45%), Gaps = 15/284 (5%)

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKLKFSV 376
           C       A +L E       APD  T  P++   A  G +D     L  M  +    + 
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTY 60

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLF 435
            A +  F      + +++  A+ + EE++ +G   ++  YN+L+ AL ++  V  A  + 
Sbjct: 61  TALIAAF-----ARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVV 115

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            KM       N ++F+  +    + G++ +A +    ++     P+V  Y+ L  GLCK 
Sbjct: 116 KKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKS 175

Query: 496 GEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
            +   A  ++ +     ASG  P  F Y+  I  +C++ + E+  ++L  M   GC P+ 
Sbjct: 176 QKFLEAKEVLEE---MKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDV 232

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           V+ S+II   CK G L EA+K    +R+++     + + Y+ ++
Sbjct: 233 VVYSSIIHAFCKSGKLLEAQKTLQEMRKQR--KSPDVVTYNTVI 274


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 195/448 (43%), Gaps = 57/448 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K KG+  +  +YN L   L                 S+G +   LE   ++ +  CKP V
Sbjct: 153 KNKGFSPDIVTYNILIGSLC----------------SRGMLDSALEFKNQLLKENCKPTV 196

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT +I     +  +D  +++ +EM +  ++ D+  Y ++I G+C+ G V R  ++   
Sbjct: 197 VTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISS 256

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +   G   D   Y +L+ GL+ +GK     +L+ D+V  G  A++  Y+ +I  +CR  +
Sbjct: 257 ISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGK 316

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            ++   L +   +  L PD    +PL+    + GR+D   ++L  M  +      D+  +
Sbjct: 317 VEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVM--ISDGCVPDIVNY 374

Query: 384 FEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
              L  + K++R   AL +FE+L   G S +   YN +  AL   G   +AL        
Sbjct: 375 NTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRAL-------- 426

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
                               G ILE       +++    P    YN L   LC+ G +D 
Sbjct: 427 --------------------GMILE-------MLDKGVDPDGITYNSLISCLCRDGMVDE 459

Query: 501 AMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           A+ L+ D  + +    P+   Y + +L +C+       IEVL  M  +GC PNE   + +
Sbjct: 460 AIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFL 519

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTE 587
           I G+   G L +AR + T L     ++E
Sbjct: 520 IEGIGFGGCLNDARDLATTLVNMDAISE 547



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/463 (21%), Positives = 193/463 (41%), Gaps = 52/463 (11%)

Query: 136 SKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMR 195
           S +F      KG+K +      L + L  +     A QV  ++++ G             
Sbjct: 76  SLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGH------------ 123

Query: 196 RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVV 255
                PD+ AY A+I        +D+  +V + MK      D++ Y  LI  LC  G + 
Sbjct: 124 -----PDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLD 178

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
              E   ++ +         Y +LIE  + +G + +A  LL ++++   + D+  YNSII
Sbjct: 179 SALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSII 238

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            G+CR    D+A+++         APD  T N LL      G+ +  ++L++ M      
Sbjct: 239 RGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDM------ 292

Query: 376 VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLF 435
           VA   E                            ++V  Y++L+ ++   G+V++ + L 
Sbjct: 293 VARGCE----------------------------ANVVTYSVLISSVCRDGKVEEGVGLL 324

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             M+   L+ +   +   I    + G +  A E  + +I    VP +  YN +   LCK 
Sbjct: 325 KDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQ 384

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
              D A+ +    LG V   P    Y      +  +G   + + ++ EM  +G  P+ + 
Sbjct: 385 KRADEALSIFEK-LGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGIT 443

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
            +++IS +C+ G ++EA ++  ++       + + + Y+ +L+
Sbjct: 444 YNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLL 486


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 204/442 (46%), Gaps = 31/442 (7%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK--DLVEADVM 239
           G   +   ILE ++R    P+V  YT +++    +  ++   RV +EMK+  D+V  D +
Sbjct: 267 GWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIV-VDEV 325

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           AY  +I G C+ GR+     +  EM++ GI ++  +Y  +I GL   G++ +   +L+++
Sbjct: 326 AYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEM 385

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D G R D   YN++I G CR     KA+++  + V++ LA    T N LL     +  +
Sbjct: 386 EDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAI 445

Query: 360 DNFFKLLAQMEKL-----KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVP 413
           D+  +L   M K      + S +  L+  F+   GK E+   AL++++E   +G + +V 
Sbjct: 446 DDALRLWFLMLKRGVAPNEISCSTLLDGLFK--AGKTEQ---ALNLWKETLARGLAKNVI 500

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            +N ++  L +IG + +A  L  +M+ L    +SL++      + + G +  A    NK+
Sbjct: 501 TFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKM 560

Query: 474 IEMSQVPSVAAYNCLTKG------LCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTI 525
             +   PSV  +N    G        K+ +I + M          A G  P    Y   I
Sbjct: 561 EHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEM---------SARGLSPNLVTYGALI 611

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
              C+ G   +   +  EM   G  PN  ICSA++S   K G ++EA  V   L    ++
Sbjct: 612 AGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMI 671

Query: 586 TEANTIVYDEILIEHMKKKTAD 607
              +    +   I H+    AD
Sbjct: 672 PGCSISTIEIDKISHVVDTIAD 693



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 195/400 (48%), Gaps = 7/400 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GR+A+ +E +E+M     + ++ AY A++         +   R+ E +++  +  +V+ 
Sbjct: 231 DGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVT 290

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENG-ILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y  L+ G CK GR+     + +EMKE G I++D   YG++I G    G++  A  +  ++
Sbjct: 291 YTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEM 350

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D+G   +L +YN++I GLC++ + ++  K+ +      + PD  + N L+      G M
Sbjct: 351 RDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSM 410

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIY-N 416
              F++   M  ++  +AA    +   L G      I  AL ++  +  +G +   I  +
Sbjct: 411 RKAFEMCRMM--VRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCS 468

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  L + G+ ++AL L+ +     L  N ++F+  I    + G + EA E  +++ E+
Sbjct: 469 TLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKEL 528

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P    Y  L  G CK+G++  A  L+   + ++   P+   +   I     + +  K
Sbjct: 529 RCPPDSLTYRTLFDGYCKLGQLGTATHLMNK-MEHLGFAPSVEMFNSFITGHFIAKQWHK 587

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           + ++ +EM+  G  PN V   A+I+G CK G L EA  ++
Sbjct: 588 VNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLY 627



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 100/470 (21%), Positives = 191/470 (40%), Gaps = 65/470 (13%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E+ ++L++M     +PD ++Y  +I     E ++     +   M ++ + A  + Y
Sbjct: 373 GRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTY 432

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+ G C    +     L+  M + G+  +      L++GL   GK  +A +L K+ + 
Sbjct: 433 NTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLA 492

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++  +N++I GLC++ +  +A +L +   +    PD  T   L     ++G++  
Sbjct: 493 RGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGT 552

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYNIL 418
              L+ +ME L F  A  +E F  F+ G    ++     D+  E+  +G S ++  Y  L
Sbjct: 553 ATHLMNKMEHLGF--APSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGAL 610

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G + +A  L+ +M    +  N    S  + C  + G + EA     K++ +  
Sbjct: 611 IAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDM 670

Query: 479 VPSVA--------------------------AYNCLTKGLCKIGEIDAAMML-------- 504
           +P  +                           +N +  GLCK G I  A  L        
Sbjct: 671 IPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKR 730

Query: 505 --------------------------VRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
                                     +RD + +    P    Y   I  +C+SG+  + +
Sbjct: 731 FLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAV 790

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
            + N++  +G  PN +  + +I   CK G   EA K+   + E   + EA
Sbjct: 791 NLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEA 840



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/445 (22%), Positives = 182/445 (40%), Gaps = 44/445 (9%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           I + L +   M +    P+  + + ++  L      +  L +W+E     +  +V+ + T
Sbjct: 445 IDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNT 504

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I GLCK GR+    EL   MKE     D   Y  L +G    G++G A  L+  +   G
Sbjct: 505 VINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLG 564

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN-- 361
           +   + ++NS I G    KQ+ K   +        L+P+  T   L+    + G +    
Sbjct: 565 FAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEAC 624

Query: 362 --FFKLLAQ-MEKLKFSVAADLEKFF-EFLVGKEERIMMALDVFEELKGKGYSSVPI--- 414
             +F+++   M    F  +A +  F+ E  V +   ++  L   + + G   S++ I   
Sbjct: 625 NLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKI 684

Query: 415 ------------------YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
                             +N+++  L + G +  A  LF  +R      ++ ++S  I  
Sbjct: 685 SHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHG 744

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
              SG I EA    + ++     P++  YN L  GLCK G++  A+ L    L +    P
Sbjct: 745 CAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNK-LQSKGISP 803

Query: 517 TEFKYALTILHVCRSGEA----------------EKIIEVLNEMTQEGCPPNEVICSAII 560
               Y   I   C+ G+                 E+ I++L++M +    PN +    +I
Sbjct: 804 NGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLI 863

Query: 561 SGMCKHGTLEEARKVFTNLRERKLL 585
            G  K G +EE  K++  +  R LL
Sbjct: 864 HGYIKSGNMEEISKLYDEMHIRGLL 888



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/470 (20%), Positives = 210/470 (44%), Gaps = 15/470 (3%)

Query: 117 VTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVP 175
           +TP L+   L+ V  +P  A   F  A  +     +  S+  L + L+R   F  A    
Sbjct: 68  LTPALLQAALRRVRLDPDAALHLFRLAPSRP----SLVSHAQLLHILARARRFHDARA-- 121

Query: 176 ELMDSQGRIAE-MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
            L+ S    AE +   L ++ R+     V ++  ++R  A    L + L V++ M K   
Sbjct: 122 -LLSSLPPHAEPLFPHLAEVYRDFTFSAV-SFDLLLRAHADAGQLSSALNVFDGMGKVGC 179

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
              + +   L+  L + G       ++ +M+  G+L D     ++ +    +G+V +A +
Sbjct: 180 RPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVE 239

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
            ++++   G   +L  Y++++   C +   + A ++ E   +  L+P+  T   L+    
Sbjct: 240 FVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYC 299

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKG-YSS 411
           + GRM+   +++ +M++    +  D   +   + G  +R  M  A  V  E++  G + +
Sbjct: 300 KDGRMEEAERVVKEMKETG-DIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVN 358

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           + +YN ++  L ++G +++   +  +M  + +  +  S++  I  +   G + +A E   
Sbjct: 359 LFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCR 418

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
            ++      +   YN L KG C +  ID A+ L    L      P E   +  +  + ++
Sbjct: 419 MMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKR-GVAPNEISCSTLLDGLFKA 477

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           G+ E+ + +  E    G   N +  + +I+G+CK G + EA ++   ++E
Sbjct: 478 GKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKE 527



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 158/392 (40%), Gaps = 29/392 (7%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+AE  E+L++M+   C PD   Y  +         L     +  +M+       V  +
Sbjct: 513 GRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMF 572

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            + I G     +  + +++  EM   G+  +   YG LI G   EG + +AC+L  ++V+
Sbjct: 573 NSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVN 632

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G   ++ I ++++    +  + D+A  + +  V  D+ P  S      +   E+ ++ +
Sbjct: 633 NGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCS------ISTIEIDKISH 686

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYNIL 418
               +A       +V  ++     F + K  RI  A  +FE L+ K +  +P    Y+ L
Sbjct: 687 VVDTIADGNPHSANVMWNV---IIFGLCKSGRIADAKSLFESLRNKRF--LPDNFTYSSL 741

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +      G + +A  L   M    L  N ++++  I    +SG +  A    NK+     
Sbjct: 742 IHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGI 801

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMML---------------VRDCLGNVASGPTEFKYAL 523
            P+   YN L    CK G+   A  L               + D +      P    Y  
Sbjct: 802 SPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCT 861

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
            I    +SG  E+I ++ +EM   G  P   I
Sbjct: 862 LIHGYIKSGNMEEISKLYDEMHIRGLLPTNWI 893



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 19/190 (10%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GRIA+   + E +R     PD F Y+++I   AA  ++D    + + M    +  +++ 
Sbjct: 713 SGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIIT 772

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI GLCK G++ R   LF +++  GI  +   Y  LI+    EGK  +A  L + +V
Sbjct: 773 YNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMV 832

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + GY                    ++A KL +  +++++ P++ T   L+    + G M+
Sbjct: 833 EEGY-------------------MEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNME 873

Query: 361 NFFKLLAQME 370
              KL  +M 
Sbjct: 874 EISKLYDEMH 883



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 90/215 (41%), Gaps = 26/215 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK--------- 231
           +G + E   +  +M  N   P+VF  +A++     E  +D    V +++           
Sbjct: 617 EGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSI 676

Query: 232 DLVEADVMAYVT-----------------LIMGLCKGGRVVRGHELFREMKENGILIDRA 274
             +E D +++V                  +I GLCK GR+     LF  ++    L D  
Sbjct: 677 STIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNF 736

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
            Y  LI G    G + +A  L   ++ +G   ++  YNS+I GLC+  +  +A  LF   
Sbjct: 737 TYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKL 796

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
               ++P+  T N L+    + G+    FKL  +M
Sbjct: 797 QSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKM 831



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 3/152 (1%)

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
           +   +++SF + ++ H ++G +  A    + + ++   PS+ + N L   L + G+   A
Sbjct: 143 DFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMA 202

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
            M V   +      P EF  A+     CR G   + +E + EM   G   N V   A++ 
Sbjct: 203 AM-VYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMD 261

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
             C  G  E+AR++  +L+ + L    N + Y
Sbjct: 262 CYCGMGWTEDARRILESLQRKGL--SPNVVTY 291


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 122/474 (25%), Positives = 210/474 (44%), Gaps = 26/474 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAA-DQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           ++ G      +Y+   Y L R     +A D V  L+ + G +                 +
Sbjct: 282 ERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLV-----------------N 324

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V+ Y A+I  L  +  LD  L+V EEMK   +  DV  Y  LI G CK G V +G  L  
Sbjct: 325 VYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIE 384

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EMK + +      Y  L  GL  +     + D+ +DL  +GY+ D   Y+ +I G C   
Sbjct: 385 EMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQG 444

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
             D A+KL E  V+++LAPD S    L+    +MG   N  +    M  L+  +   +  
Sbjct: 445 DLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMM--LEGGILPSIAT 502

Query: 383 FFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
               +    +E R+  AL++  E++ +G + ++  YN ++  L +  + ++AL LF  M 
Sbjct: 503 CNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLML 562

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
             N+  + + +S  I    +  +  +A   + +++++   P + AY  L   LC    + 
Sbjct: 563 KRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMC 622

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A  L +    N    P +  Y   I   CR G+  K   + NEM Q G  P  V  +++
Sbjct: 623 EAYNLFKKMTEN-GMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSL 681

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
           + G CK   ++ A  +   ++ RK +T  + + Y+ ++  H ++   D  L  L
Sbjct: 682 VDGYCKMNRIDIADMLIDEMK-RKGIT-PDVVTYNVLIAAHRRRGNLDKALEML 733



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 108/458 (23%), Positives = 186/458 (40%), Gaps = 89/458 (19%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDS-------------------QGRIAEMLEIL 191
           N   YNA+ + L +      A +V E M S                   QG + + L ++
Sbjct: 324 NVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLI 383

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           E+M+ +  +P + +Y+++   L  +R  D  L ++ ++     + D  AY  LI G C  
Sbjct: 384 EEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQ 443

Query: 252 GRVVRGHELFREMKEN-----------------------------------GILIDRAIY 276
           G +   H+L  EM  N                                   GIL   A  
Sbjct: 444 GDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATC 503

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
            V+I+    EG+V +A +L+ ++   G   +L  YN++I  LC+ ++ ++A +LF + ++
Sbjct: 504 NVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLK 563

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
            ++ P     + L+   A+         L A+M  LK  V  D               M+
Sbjct: 564 RNVLPSVVVYSTLIDGFAKQSNSQKALMLYARM--LKIGVTPD---------------MV 606

Query: 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
           A                 Y IL+  L     + +A  LF KM    +  + +S++  I  
Sbjct: 607 A-----------------YTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAG 649

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
               GD+ +A    N++++   +P+V  Y  L  G CK+  ID A ML+ D +      P
Sbjct: 650 FCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLI-DEMKRKGITP 708

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
               Y + I    R G  +K +E+LNEM + G  P+ +
Sbjct: 709 DVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHM 746



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 108/479 (22%), Positives = 203/479 (42%), Gaps = 62/479 (12%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLA----AERNLDA--CLRVWEEMKKDLVEADVMAYVT 243
           + E+M+     P+VF YT M+         E ++D      + EEM+++     V+ Y T
Sbjct: 236 LFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYST 295

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
            I GLC+ G V    +  R +     L++   Y  +I GL  +G++ +A  +L+++   G
Sbjct: 296 YIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCG 355

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEM----- 356
              D+  Y+ +I G C+    +K   L E     ++ P   + + L   +C   +     
Sbjct: 356 ISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISL 415

Query: 357 ----------------------------GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
                                       G +D+  KL+ +M  ++ ++A D   F   + 
Sbjct: 416 DIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEM--VRNNLAPDPSNFESLVH 473

Query: 389 G--KEERIMMALDVFE-ELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
           G  K    + AL+ F   L+G    S+   N+++ A    G V++AL L  +M+   +  
Sbjct: 474 GFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFP 533

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N  +++  I    +      A E    +++ + +PSV  Y+ L  G  K      A+ML 
Sbjct: 534 NLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLY 593

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
              L  +   P    Y + I  +C      +   +  +MT+ G  P+++  +++I+G C+
Sbjct: 594 ARML-KIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCR 652

Query: 566 HGTLEEARKVFTNLRERKLL-------------TEANTIVYDEILIEHMKKK--TADLV 609
            G + +A  +F  + +R  L              + N I   ++LI+ MK+K  T D+V
Sbjct: 653 IGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVV 711


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 179/412 (43%), Gaps = 41/412 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G     +++L+KM    CKP+V  Y+ +I  L  ++ +   +    EM    +  +V+ Y
Sbjct: 96  GSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTY 155

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +++ G C  GR      LF++M E  ++ D   + +L++GL  EG + +A  + + +++
Sbjct: 156 SSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIE 215

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++  YN+++ G C   Q D+A KLF + V+   AP   + N L+    + GR+D 
Sbjct: 216 KGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDE 275

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
              LLA+M     +                                       Y+ LM  
Sbjct: 276 AKGLLAEMSHKALT----------------------------------PDTVTYSTLMKG 301

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
             + G  + A  L  +MR   L  + +++SI +    + G + EA E    + E    P+
Sbjct: 302 FCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPN 361

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV---ASGPTEFKYALTILHVCRSGEAEKII 538
           +  Y  L +G+C  G+++AA    R+   N+      P    Y + I  + + G + +  
Sbjct: 362 IFIYTILIQGMCNFGKLEAA----RELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEAC 417

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           E+  +M   GC PN    + II G  ++G    A ++   +  R    +++T
Sbjct: 418 ELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSST 469



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 184/393 (46%), Gaps = 37/393 (9%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
             +L  M +   +P+   ++ ++  L+++  +   +++++EM K   E DV+ Y T+I G
Sbjct: 32  FSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIING 91

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK G      +L ++M+E G   +  +Y  +I+ L  +  + +A + L ++V+ G   +
Sbjct: 92  LCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPN 151

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  Y+SI+ G C + + ++A  LF+  V+ ++ PD  T N L+         D       
Sbjct: 152 VVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILV---------DG------ 196

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
                               + KE  I+ A  VFE +  KG   +V  YN LM       
Sbjct: 197 --------------------LSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQS 236

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
           ++ +A  LF  M       +  S++I I+ H +SG I EA     ++   +  P    Y+
Sbjct: 237 QMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYS 296

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L KG C+ G    A  L+ + + +    P    Y++ +  +C+ G  ++  E+L  M +
Sbjct: 297 TLMKGFCQDGRPQDAQKLLEE-MRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQE 355

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
               PN  I + +I GMC  G LE AR++F+NL
Sbjct: 356 SKIEPNIFIYTILIQGMCNFGKLEAARELFSNL 388



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 146/313 (46%), Gaps = 18/313 (5%)

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A  +L ++   G + +   +++++ GL    +   A KLF+  V+    PD  T + ++ 
Sbjct: 31  AFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIIN 90

Query: 352 CCAEMGRMDNFFKLLAQMEK-------LKFSVAADLEKFFEFLVGKEERIMMALDVFEEL 404
              +MG      +LL +ME+       + +S   D        + K++ I  A++   E+
Sbjct: 91  GLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIID-------SLCKDKLITEAMEFLSEM 143

Query: 405 KGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
             +G S +V  Y+ ++     +G   +A  LF +M   N+  ++++F+I +    + G I
Sbjct: 144 VNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMI 203

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
           LEA      +IE    P+V  YN L  G C   ++D A  L  + +      P+   Y +
Sbjct: 204 LEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLF-NIMVRKGCAPSVRSYNI 262

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I   C+SG  ++   +L EM+ +   P+ V  S ++ G C+ G  ++A+K+   +R   
Sbjct: 263 LIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYG 322

Query: 584 LLTEANT--IVYD 594
           LL +  T  IV D
Sbjct: 323 LLPDLMTYSIVLD 335



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 24/242 (9%)

Query: 115 RRVTPDLVAEVLKVEN----NPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLF 168
           R V PD V   + V+        L ++       +KG + N  +YNAL   YC       
Sbjct: 181 RNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYC------- 233

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
                      SQ ++ E  ++   M R  C P V +Y  +I+       +D    +  E
Sbjct: 234 -----------SQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAE 282

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           M    +  D + Y TL+ G C+ GR     +L  EM+  G+L D   Y ++++GL  +G 
Sbjct: 283 MSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGH 342

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           + +A +LLK + +S    ++ IY  +I G+C   + + A +LF       + PD  T   
Sbjct: 343 LDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTV 402

Query: 349 LL 350
           ++
Sbjct: 403 MI 404



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 81/168 (48%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR  +  ++LE+MR     PD+  Y+ ++  L  + +LD    + + M++  +E ++  Y
Sbjct: 306 GRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIY 365

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G+C  G++    ELF  +   GI  D   Y V+I GL+  G   +AC+L +D+  
Sbjct: 366 TILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAV 425

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            G   +   YN II G  R      A +L E  V    + D ST   L
Sbjct: 426 HGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQML 473



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 4/174 (2%)

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A  + G M  L L+ N ++FS  +        I++A +  +++++M   P V  Y+ +  
Sbjct: 31  AFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIIN 90

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           GLCK+G    A+ L++  +      P    Y+  I  +C+     + +E L+EM   G  
Sbjct: 91  GLCKMGSTTMAIQLLKK-MEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGIS 149

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           PN V  S+I+ G C  G   EA  +F  + ER ++   +T+ ++ IL++ + K+
Sbjct: 150 PNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVM--PDTVTFN-ILVDGLSKE 200


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 121/463 (26%), Positives = 206/463 (44%), Gaps = 35/463 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
           +K  K N  +YNA    L +      A +V +LM  +G                   R  
Sbjct: 269 EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSK 328

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E   I E M  +   P+ F YTA+I     E N++  LR+ +EM    ++ +V+ Y  +I
Sbjct: 329 EAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMI 388

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G+ K G + +   LF EM   GI  D   Y +LI+G +    + KAC+LL ++      
Sbjct: 389 GGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLT 448

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
                Y+ +I GLC      KA ++ +  +++ + P+      L+    +  R +   +L
Sbjct: 449 PSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIEL 508

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG------KEERIMMALDVFEE-LKGKGYSSVPIYNIL 418
           L  M  +   V  DL  +   ++G       EE  M+ +D+ E+ +K   ++    Y   
Sbjct: 509 LKIM--IANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHT----YGAF 562

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + GE++ A   F  M    +  N++ ++I I+ H + G+ +EA      ++E   
Sbjct: 563 INLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGL 622

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           +P + AY+ +   L K G+   AM +    L      P  F Y   I   C+ G+ EK  
Sbjct: 623 IPDIRAYSAIIHSLSKNGKTKEAMGVFLKFL-KTGVVPDVFLYNSLISGFCKEGDIEKAS 681

Query: 539 EVLNEMTQEGCPPNEVICSAIIS--GMCKHGTLEEARKVFTNL 579
           ++ +EM   G  PN V+ + +I+  G CK G L EA K+F  +
Sbjct: 682 QLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEM 724



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 173/397 (43%), Gaps = 38/397 (9%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +L +M +  CKP++F Y A I  L     +D  L V + M +  +  D   Y  L+ G C
Sbjct: 264 VLSEMEKE-CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFC 322

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K  R      +F  M  +G+  +R  Y  LI+G + EG + +A  +  +++  G + ++ 
Sbjct: 323 KQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVV 382

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            YN++IGG+ +  +  KA  LF   +   + PD  T N L+         D + K     
Sbjct: 383 TYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLI---------DGYLK----- 428

Query: 370 EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEV 428
                  + D+ K              A ++  E+K +  +  P  Y++L+  L    ++
Sbjct: 429 -------SHDMAK--------------ACELLAEMKARKLTPSPFTYSVLISGLCHSSDL 467

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
           +KA  +  +M    ++ N   +   I+ +V+      A E    +I    +P +  YNCL
Sbjct: 468 QKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCL 527

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
             GLC+  +++ A ML+ D +G     P    Y   I    +SGE +       +M   G
Sbjct: 528 IIGLCRAKKVEEAKMLLVD-MGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSG 586

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
             PN VI + +I G C  G   EA   F  + E+ L+
Sbjct: 587 IVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLI 623



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 110/419 (26%), Positives = 187/419 (44%), Gaps = 10/419 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I E L I ++M     K +V  Y AMI  +A    +   + ++ EM    +E D   
Sbjct: 359 EGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWT 418

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G  K   + +  EL  EMK   +      Y VLI GL     + KA ++L  ++
Sbjct: 419 YNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMI 478

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +G + ++ +Y ++I    +  +++ A +L ++ + + + PD    N L++      +++
Sbjct: 479 RNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVE 538

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYNI 417
               LL  M +      A     F  L  K   I +A   F+++   G   VP   IY I
Sbjct: 539 EAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGI--VPNNVIYTI 596

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+    ++G   +AL  F  M    L  +  ++S  I    ++G   EA     K ++  
Sbjct: 597 LIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTG 656

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI--LHVCRSGEAE 535
            VP V  YN L  G CK G+I+ A  L  + L N    P    Y   I     C+SG   
Sbjct: 657 VVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHN-GINPNIVVYNTLINDYGYCKSGNLT 715

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL--LTEANTIV 592
           +  ++ +EM  +G  P+  I   +I G  K G LE+A  +F   +++ +  L+  N+++
Sbjct: 716 EAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLI 774



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 120/516 (23%), Positives = 217/516 (42%), Gaps = 76/516 (14%)

Query: 114 LRRVTPDLVAEVLKVE--NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA 171
           +R++ P++V  VL+    ++      FFHW+  +        SY+ LA  L  + L   A
Sbjct: 80  VRKLNPEIVCSVLQKSEIDDSVRLQNFFHWSSSKMSTPQYLHSYSILAIRLCNSGLIHQA 139

Query: 172 DQVPE-LMDSQGRIAEMLEILEKMRR-----NLCKPDVF---------------AYTA-- 208
           D + E L+ ++    E+L+ L +  R     NL   D+F                + A  
Sbjct: 140 DNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASI 199

Query: 209 -------------MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVV 255
                        ++R L     +    +V+  M +  +  DV  Y  +I   CK G V+
Sbjct: 200 SEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVI 259

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
           +G  +  EM E     +   Y   I GL   G V +A ++ K +++ G   D   Y  ++
Sbjct: 260 KGKMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLV 318

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            G C+ K+  +A  +FE      L P+                              +F+
Sbjct: 319 DGFCKQKRSKEAKLIFESMPSSGLNPN------------------------------RFT 348

Query: 376 VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL 434
             A ++ F      KE  I  AL + +E+  +G   +V  YN ++G + + GE+ KA+ L
Sbjct: 349 YTALIDGFI-----KEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSL 403

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           F +M    +E ++ ++++ I  +++S D+ +ACE   ++      PS   Y+ L  GLC 
Sbjct: 404 FNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCH 463

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
             ++  A  ++   + N    P  F Y   I    +    E  IE+L  M   G  P+  
Sbjct: 464 SSDLQKANEVLDQMIRN-GVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLF 522

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             + +I G+C+   +EEA+ +  ++ E+ +   A+T
Sbjct: 523 CYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHT 558



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/435 (21%), Positives = 191/435 (43%), Gaps = 21/435 (4%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           +KG K N  +Y A     S++   + A++  + M S G +                P+  
Sbjct: 549 EKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIV----------------PNNV 592

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            YT +I+      N    L  ++ M +  +  D+ AY  +I  L K G+      +F + 
Sbjct: 593 IYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKF 652

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG--GLCRVK 322
            + G++ D  +Y  LI G   EG + KA  L  +++ +G   ++ +YN++I   G C+  
Sbjct: 653 LKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSG 712

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
              +A+KLF+  +   ++PD      L+  C + G ++    L  + ++      +    
Sbjct: 713 NLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNS 772

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
             +    K  +++ A ++F+++  K  + ++  Y IL+ A  +   +++A  LF  M   
Sbjct: 773 LIDSFC-KHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETR 831

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
           N+  N+L+++  +  + + G+  +       +          AY  +    CK G+   A
Sbjct: 832 NIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEA 891

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           + L+   L        +   AL I H+C+  +   ++E+L+EM +E    +   C+ ++ 
Sbjct: 892 LKLLNKSLVEGIKLEDDVFDAL-IFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLL 950

Query: 562 GMCKHGTLEEARKVF 576
           G  K G  +EA KV 
Sbjct: 951 GFYKSGNEDEASKVL 965



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 96/201 (47%), Gaps = 3/201 (1%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L+DS    G++ E  E+ + M      P++  YT +I        ++   +++ +M+   
Sbjct: 773 LIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRN 832

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  + + Y +L++   + G   +   LF++M+  GI  D   YGV+      EGK  +A 
Sbjct: 833 IIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEAL 892

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            LL   +  G + +  +++++I  LC+ KQ     +L     +++L+    T N LL+  
Sbjct: 893 KLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGF 952

Query: 354 AEMGRMDNFFKLLAQMEKLKF 374
            + G  D   K+L  M++L +
Sbjct: 953 YKSGNEDEASKVLGVMQRLGW 973


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 171/330 (51%), Gaps = 11/330 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +   L +  KM    C P+V+ +T++++       +   L +W  M ++  E +V+AY
Sbjct: 298 GNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAY 357

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI GLC  G++     +  +M+ NG   + + YG LI+G    G +  A ++   ++ 
Sbjct: 358 NTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMT 417

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRM 359
           +G   ++ +Y S++  LCR   F +A+ L E    D+  P+  T N  +  +CC+  GR+
Sbjct: 418 NGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCS--GRV 475

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           +    L  QME  ++  + +++ + E L G  KE RI  AL++  E++ KG   ++  YN
Sbjct: 476 ECAINLFCQME--QYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYN 533

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            + G    +G+ ++AL L GKM    ++ ++++++     +   G +  A +  +K+   
Sbjct: 534 TIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAG 593

Query: 477 SQ-VPSVAAYNCLTKGLC-KIGEIDAAMML 504
            + VP VAAY  L  G+C +IG  +A + L
Sbjct: 594 GKWVPEVAAYTSLLWGICNQIGVEEAVLYL 623



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/494 (22%), Positives = 216/494 (43%), Gaps = 32/494 (6%)

Query: 126 LKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRN----------------NLFR 169
           L+ E +  LAS +F      K ++H   +Y  +   L R                  +  
Sbjct: 53  LRTETDIVLASNYFRSIANSKAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISC 112

Query: 170 AADQVPELMDSQGRIA---EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVW 226
           + D    ++++  R+    + L++  ++R   C+P V  Y  ++  + +E        ++
Sbjct: 113 SEDLFINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIY 172

Query: 227 EEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
             MK+D  E +V  Y  L+  LCK  RV    +L  EM   G   D   Y  +I  +   
Sbjct: 173 SNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKL 232

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
           GKV +A +L        ++ ++ +YN++I G CR  +  + + L    V+  + P+  T 
Sbjct: 233 GKVEEAREL-----SIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITY 287

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL 404
           + ++   + +G ++    + A+M       + ++  F   + G     R++ AL+++  +
Sbjct: 288 STVISSLSGIGNVELALAVWAKM--FVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRM 345

Query: 405 KGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
             +G+  +V  YN L+  L   G++ +A+ +  KM       N  ++   I    ++GD+
Sbjct: 346 AEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDL 405

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
           + A E  NK++    +P+V  Y  +   LC+      A  L+   +      P    +  
Sbjct: 406 VGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEK-MSTDNCPPNTVTFNT 464

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I  +C SG  E  I +  +M Q GC PN    + ++ G+ K   ++EA ++ T + E+ 
Sbjct: 465 FIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKG 524

Query: 584 LLTEANTIVYDEIL 597
           +  E N + Y+ I 
Sbjct: 525 M--ELNLVTYNTIF 536



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 19/244 (7%)

Query: 145 QKGYKHNFASYNALAYCL----------------SRNNLFRAADQVPELMDSQGRIAEML 188
           ++G++ N  +YN L + L                 RN           L+D   +  +++
Sbjct: 347 EEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLV 406

Query: 189 ---EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
              EI  KM  N C P+V  YT+M+ VL           + E+M  D    + + + T I
Sbjct: 407 GASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFI 466

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLC  GRV     LF +M++ G   +   Y  +++GL+ E ++ +A +L+ ++ + G  
Sbjct: 467 KGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGME 526

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            +L  YN+I GG C V +F++A KL    +   + PD  T N L       G++    +L
Sbjct: 527 LNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQL 586

Query: 366 LAQM 369
           L ++
Sbjct: 587 LDKL 590


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 205/419 (48%), Gaps = 13/419 (3%)

Query: 177 LMDSQGRIAEMLEI---LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L+D  G++  + E+     +M+   C PD+  Y  +I        +      + EMK + 
Sbjct: 330 LIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNG 389

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           ++ +V+ Y TLI   CK G +    +LF +M+  G+L +   Y  LI+     G + +A 
Sbjct: 390 LKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAW 449

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            LL D++ +G + ++  Y +++ GLC+  +  +A ++F   ++D ++P+      L+   
Sbjct: 450 KLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGY 509

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSS 411
            +  RM++  K+L QM +   ++  DL  +   + G   + ++     + EE+K +G S+
Sbjct: 510 IKAERMEDAMKILKQMTEC--NIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISA 567

Query: 412 VP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            P I   ++ A  + G+   AL  F +M+ + +E   +++ + I    ++G +  A +  
Sbjct: 568 NPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYF 627

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYALTILHV 528
            +++ +   P+VA Y  L  GLCK   I++A  L  +  C G     P    +   I   
Sbjct: 628 CRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMT---PDITAFTALIDGN 684

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
            + G  ++ + +++ MT+     +  + ++++SG  + G L +ARK F  + E+ +L E
Sbjct: 685 LKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPE 743



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 211/491 (42%), Gaps = 24/491 (4%)

Query: 117 VTPDLVAEVL-KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFR-AADQV 174
           + P  V+++L  +  +P LA KFF WAG Q G++H   SY  + + + R  ++  A D V
Sbjct: 127 LAPIWVSKILLGLREDPKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTV 186

Query: 175 PEL-----MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
            E+     MD    +  + ++L    RN+C      +  +  V      L+     +  M
Sbjct: 187 KEVIMNSRMDMGFPVCNIFDMLWS-TRNICVSGSGVFDVLFSVFVELGLLEEANECFSRM 245

Query: 230 K--KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
           +  + L +A    ++   +     G++VR  + F +M   GI      Y V+I+ L  EG
Sbjct: 246 RNFRTLPKARSCNFLLHRLSKSGNGQLVR--KFFNDMIGAGIAPSVFTYNVMIDYLCKEG 303

Query: 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
            +  +  L   + + G   D+  YNS+I G  +V   ++   LF         PD  T N
Sbjct: 304 DLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYN 363

Query: 348 PLLVCCAEMGRMDNFFKLLAQMEK--LKFSVAADLEKFFEFLVGKEERIMMALDVFEELK 405
            L+ C  +  +M   F+  ++M+   LK +V         F   KE  +  A+ +F +++
Sbjct: 364 GLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFC--KEGMMQGAIKLFVDMR 421

Query: 406 GKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
             G   +P    Y  L+ A  + G + +A  L   M    +++N ++++  +    ++G 
Sbjct: 422 RTGL--LPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGR 479

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
           ++EA E    +++    P+   Y  L  G  K   ++ AM +++  +      P    Y 
Sbjct: 480 MIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQ-MTECNIKPDLILYG 538

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             I   C   + E+   +L EM   G   N VI + II    K G   +A   F  +++ 
Sbjct: 539 SIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDV 598

Query: 583 KLLTEANTIVY 593
            +  EA  + Y
Sbjct: 599 GV--EATIVTY 607



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 16/149 (10%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G + N A Y +L   L +NN   +A ++ + M  +G                  PD+ A+
Sbjct: 634 GLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGM----------------TPDITAF 677

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           TA+I       NL   L +   M +  +E D+  Y +L+ G  + G + +  + F EM E
Sbjct: 678 TALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIE 737

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            GIL +  +   L+      G++ +A +L
Sbjct: 738 KGILPEEVLCICLLREYYKRGQLDEAIEL 766


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 209/447 (46%), Gaps = 43/447 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG + E + +L K+    C+ D+ +Y A+++ L   +       + +EM +     +++ 
Sbjct: 194 QGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVT 253

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + TLI  LC+ G   R HE+  +M E+G   D  +Y  +I+G+  EG +  A ++L  + 
Sbjct: 254 FNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMP 313

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + ++  YN+++ GLC  +++ +A +L     Q D   D  T N L+    + G +D
Sbjct: 314 SYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVD 373

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
              +LL QM                                  L       V  Y  ++ 
Sbjct: 374 RVIELLEQM----------------------------------LSHGCMPDVITYTTVIN 399

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G + +A+ L   M     + N++S++I ++    +G  ++A E  +++I+    P
Sbjct: 400 GFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPP 459

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +   +N L   LCK G ++ A+ L++  L N  S P    Y+  I  + ++G+ E+ +E+
Sbjct: 460 NPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCS-PDLISYSTVIDGLGKAGKTEEALEL 518

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           LN M  +G  PN +I S+I   + + G + +  ++F N+++  + ++A  ++Y+ ++   
Sbjct: 519 LNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDA--VLYNAVISSL 576

Query: 601 MKKKTADLVLSGLKFFGLESKLKAKGC 627
            K+   D     + FF   + + + GC
Sbjct: 577 CKRWETD---RAIDFF---AYMVSNGC 597



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 172/375 (45%), Gaps = 6/375 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+ + +  ++R L     +   L V +EM           Y  ++   C+ G       +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              M   G  +D     +++  +  +G V +A  LL+ L   G  AD+  YN+++ GLC 
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            K++    +L +  V+ D AP+  T N L+      G  +   ++LAQM   +     D+
Sbjct: 229 AKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS--EHGCTPDI 286

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             +   + G  KE  + +A ++   +   G   +V  YN ++  L      K+A  L  +
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M   +  ++ ++F+I +    ++G +    E   +++    +P V  Y  +  G CK G 
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGL 406

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           ID A+ML++  + +    P    Y + +  +C +G      E++++M Q+GCPPN V  +
Sbjct: 407 IDEAVMLLKS-MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFN 465

Query: 558 AIISGMCKHGTLEEA 572
            +I+ +CK G +E+A
Sbjct: 466 TLINFLCKKGLVEQA 480



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 92/190 (48%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S GR  +  E++ +M +  C P+   +  +I  L  +  ++  + + ++M  +    D++
Sbjct: 438 SAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLI 497

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y T+I GL K G+     EL   M   GI  +  IY  +   L  EG+V K   +  ++
Sbjct: 498 SYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNI 557

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D+  R+D  +YN++I  LC+  + D+A   F   V +   P+ ST   L+   A  G  
Sbjct: 558 KDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLA 617

Query: 360 DNFFKLLAQM 369
               +LL+++
Sbjct: 618 KEAQELLSEL 627



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 125/290 (43%), Gaps = 1/290 (0%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S  R  E  E+L +M +  C  D   +  ++        +D  + + E+M       DV+
Sbjct: 333 SAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVI 392

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I G CK G +     L + M   G   +   Y ++++GL   G+   A +L+  +
Sbjct: 393 TYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQM 452

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G   +   +N++I  LC+    ++A +L +  + +  +PD  + + ++    + G+ 
Sbjct: 453 IQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKT 512

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNIL 418
           +   +LL  M     S    +       + +E R+   + +F+ +K     S   +YN +
Sbjct: 513 EEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAV 572

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           + +L +  E  +A+  F  M       N  ++++ I+     G   EA E
Sbjct: 573 ISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQE 622



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 128/293 (43%), Gaps = 52/293 (17%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           YN+++ G CR  Q   A +L        + P+  T  P++      GR+ +         
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAAAV---PVPPNAYTFFPVVRGLCTRGRIAD--------- 129

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSV-PIYNILMGALLEIGEVK 429
                                     AL+V +E+  KG + + P+Y++++ A    G  +
Sbjct: 130 --------------------------ALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFR 163

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
            ++ +   M      +++ + ++ +    E G + EA     K+        + +YN + 
Sbjct: 164 NSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVL 223

Query: 490 KGLC---KIGEIDAAM--MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           KGLC   + G+++  M  M+  DC  N+ +  T   Y      +CR+G  E++ EVL +M
Sbjct: 224 KGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY------LCRNGLFERVHEVLAQM 277

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           ++ GC P+  + + II G+CK G LE A ++   +    L  + N + Y+ +L
Sbjct: 278 SEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGL--KPNVVCYNTVL 328



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 19/178 (10%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQV----------PELMD---------SQGRIA 185
           Q+G   N  ++N L   L +  L   A ++          P+L+            G+  
Sbjct: 454 QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE 513

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E LE+L  M      P+   Y+++   L+ E  ++  +++++ +K   + +D + Y  +I
Sbjct: 514 EALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVI 573

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
             LCK     R  + F  M  NG + + + Y +LI+GL  EG   +A +LL +L   G
Sbjct: 574 SSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 5/142 (3%)

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V AYN +  G C+ G++ AA  L       V   P  + +   +  +C  G     +EVL
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAA----AVPVPPNAYTFFPVVRGLCTRGRIADALEVL 134

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL-LTEANTIVYDEILIEH 600
           +EM+ +GC P   +   I+   C+ G    + +V   +  +   L   N  +    + E 
Sbjct: 135 DEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQ 194

Query: 601 MKKKTADLVLSGLKFFGLESKL 622
                A  +L  L FFG E+ +
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADI 216



 Score = 39.7 bits (91), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 16/166 (9%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            KG   N   Y+++A  LSR                +GR+ +++++ + ++    + D  
Sbjct: 524 NKGISPNTIIYSSIACALSR----------------EGRVNKVIQMFDNIKDTTIRSDAV 567

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y A+I  L      D  +  +  M  +    +   Y  LI GL   G      EL  E+
Sbjct: 568 LYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
              G L    +    I     E    K  + L   VD+ Y+  + I
Sbjct: 628 CSRGALRKHLMRHFGISNCTQENGKQKCEENLTSAVDNNYKLPIEI 673


>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
          Length = 826

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 146/641 (22%), Positives = 258/641 (40%), Gaps = 113/641 (17%)

Query: 61  PHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFR--KNQFQWGPQVVTELSKLRRVT 118
           P   P   +   PS P       HL  + +   D  R  K +  W   +    S+     
Sbjct: 11  PLRHPKPTSSCIPSTP-------HLKYLVK---DTIRIIKTETLWQEALEIRFSETDTRV 60

Query: 119 PDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASY--NALAYCLSRNNLFRAADQVPE 176
            ++   V    ++P L   FF WA KQ    ++   +  ++L   L+R  +F+  + + E
Sbjct: 61  SEIAHFVFDQIHDPRLGLNFFEWASKQSTLSNSLDGFVCSSLLKLLARFRVFKEIENLLE 120

Query: 177 LMDSQ-------------------GRIAEMLEILEK-MRRNLCKPDVFAYTAMIRVLAAE 216
            M S+                   G + E LE+    +  + C PDVFA  +++ +L   
Sbjct: 121 TMKSKELIPTCEALSFVISAYAGSGLVKEALELYNTVIDVHNCVPDVFACNSLLNLLVHH 180

Query: 217 RNLDACLRVWEEM---------------------------KKDLVEA--------DVMAY 241
             ++   +V++EM                            + L+E         +++ Y
Sbjct: 181 GKVEIARKVYDEMVDRNGDVDNYTVCIVTKGLCKEGKVEEGRHLIEKRWGKGCVPNIVFY 240

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG----------- 290
            TLI G CK G + R + LF+E+K  G L     YG +I     +GK             
Sbjct: 241 NTLIDGYCKNGDIERANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAVDKLLVEMKE 300

Query: 291 ------------------------KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
                                   +A D ++ +++SG   D+  YN++I G C   +  +
Sbjct: 301 RGLAVSLQIFNGIIDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLINGSCSKGKVRE 360

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A +L E  ++  L P+  +  PL+   ++ G      +LL +M +   ++  DL  +   
Sbjct: 361 AEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTL--DLIAYGAL 418

Query: 387 LVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           + G      + +AL V +++  +G      IYN+LM  L + G    A  L  +M   N+
Sbjct: 419 VHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQNV 478

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             ++   +  +   +  G++ EA +     IE     SV   N + KG CK G ++ A++
Sbjct: 479 TPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKYGMMNDALL 538

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
             +     V S P EF Y+  I    +  +    + +   M ++ C PN V  +++I+G 
Sbjct: 539 CFKRMFNGVHS-PDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLINGF 597

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           C++G L  A KVF  +R      E N + Y  ILI +  K+
Sbjct: 598 CRNGDLNRAEKVFEEMRSFGF--EPNVVTY-TILIGYFCKE 635



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 192/422 (45%), Gaps = 22/422 (5%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+G++ E  E+LE   R    P+ F+YT +I   +          +  EM +     D++
Sbjct: 354 SKGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTLDLI 413

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           AY  L+ GL   G V     +  +M E GIL D  IY VL+ GL  +G+   A  LL ++
Sbjct: 414 AYGALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEM 473

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +D     D  +  +++ G  R    D+A KLF++T++  +       N ++    + G M
Sbjct: 474 LDQNVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKYGMM 533

Query: 360 DNFFKLLAQM-----EKLKFSVAADLEKFFEFLVGKEERIMMALDVFE-ELKGKGYSSVP 413
           ++      +M        +F+ +  ++ +      K+  +  AL +F   LK     +V 
Sbjct: 534 NDALLCFKRMFNGVHSPDEFTYSTIIDGYV-----KQNDLRGALRMFGLMLKKTCKPNVV 588

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            +  L+      G++ +A  +F +MR    E N ++++I I    + G + +AC    ++
Sbjct: 589 TFTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCKEGKLTKACFFFEQM 648

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEI-------DAAMMLVRDCLGNVASGPTEFK---YAL 523
           +    +P+ A +N L  GL     I       ++   L  +  G + S   +++   Y  
Sbjct: 649 LINKCIPNDATFNYLVNGLTNNNGIAISSKRSNSQPNLTLEFFGMMISDGWDWRIAAYNS 708

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF-TNLRER 582
            +L +C+    +  +++ ++M  +G PP+ V   A++ G+C  G L++   V   N  ER
Sbjct: 709 ILLCLCQHKMVKPALQLHDKMMSKGFPPDPVSFIALLHGLCLEGRLQDWNNVIPCNFNER 768

Query: 583 KL 584
           +L
Sbjct: 769 QL 770


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 204/442 (46%), Gaps = 31/442 (7%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK--DLVEADVM 239
           G   +   ILE ++R    P+V  YT +++    +  ++   RV +EMK+  D+V  D +
Sbjct: 267 GWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIV-VDEV 325

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           AY  +I G C+ GR+     +  EM++ GI ++  +Y  +I GL   G++ +   +L+++
Sbjct: 326 AYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEM 385

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D G R D   YN++I G CR     KA+++  + V++ LA    T N LL     +  +
Sbjct: 386 EDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAI 445

Query: 360 DNFFKLLAQMEKL-----KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVP 413
           D+  +L   M K      + S +  L+  F+   GK E+   AL++++E   +G + +V 
Sbjct: 446 DDALRLWFLMLKRGVAPNEISCSTLLDGLFK--AGKTEQ---ALNLWKETLARGLAKNVI 500

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            +N ++  L +IG + +A  L  +M+ L    +SL++      + + G +  A    NK+
Sbjct: 501 TFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKM 560

Query: 474 IEMSQVPSVAAYNCLTKG------LCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTI 525
             +   PSV  +N    G        K+ +I + M          A G  P    Y   I
Sbjct: 561 EHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEM---------SARGLSPNLVTYGALI 611

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
              C+ G   +   +  EM   G  PN  ICSA++S   K G ++EA  V   L    ++
Sbjct: 612 AGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMI 671

Query: 586 TEANTIVYDEILIEHMKKKTAD 607
              +    +   I H+    AD
Sbjct: 672 PGCSISTIEIDKISHVVDTIAD 693



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 195/400 (48%), Gaps = 7/400 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GR+A+ +E +E+M     + ++ AY A++         +   R+ E +++  +  +V+ 
Sbjct: 231 DGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVT 290

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENG-ILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y  L+ G CK GR+     + +EMKE G I++D   YG++I G    G++  A  +  ++
Sbjct: 291 YTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEM 350

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D+G   +L +YN++I GLC++ + ++  K+ +      + PD  + N L+      G M
Sbjct: 351 RDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSM 410

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIY-N 416
              F++   M  ++  +AA    +   L G      I  AL ++  +  +G +   I  +
Sbjct: 411 RKAFEMCRMM--VRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCS 468

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  L + G+ ++AL L+ +     L  N ++F+  I    + G + EA E  +++ E+
Sbjct: 469 TLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKEL 528

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P    Y  L  G CK+G++  A  L+   + ++   P+   +   I     + +  K
Sbjct: 529 RCPPDSLTYRTLFDGYCKLGQLGTATHLMNK-MEHLGFAPSVEMFNSFITGHFIAKQWHK 587

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           + ++ +EM+  G  PN V   A+I+G CK G L EA  ++
Sbjct: 588 VNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLY 627



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/446 (23%), Positives = 189/446 (42%), Gaps = 30/446 (6%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           I + L +   M +    P+  + + ++  L      +  L +W+E     +  +V+ + T
Sbjct: 445 IDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNT 504

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I GLCK GR+    EL   MKE     D   Y  L +G    G++G A  L+  +   G
Sbjct: 505 VINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLG 564

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN-- 361
           +   + ++NS I G    KQ+ K   +        L+P+  T   L+    + G +    
Sbjct: 565 FAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEAC 624

Query: 362 --FFKLLAQ-MEKLKFSVAADLEKFF-EFLVGKEERIMMALDVFEELKGKGYSSVPI--- 414
             +F+++   M    F  +A +  F+ E  V +   ++  L   + + G   S++ I   
Sbjct: 625 NLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKI 684

Query: 415 ------------------YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
                             +N+++  L + G +  A  LF  +R      ++ ++S  I  
Sbjct: 685 SHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHG 744

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
              SG I EA    + ++     P++  YN L  GLCK G++  A+ L    L +    P
Sbjct: 745 CAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNK-LQSKGISP 803

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
               Y   I   C+ G+  +  ++  +M +EG  P  +  S +I G+C  G +EEA K+ 
Sbjct: 804 NGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLL 863

Query: 577 TNLRERKLLTEANTIVYDEILIEHMK 602
             + E  +  + N I Y  ++  ++K
Sbjct: 864 DQMIENNV--DPNYITYCTLIHGYIK 887



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/409 (23%), Positives = 178/409 (43%), Gaps = 19/409 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+AE  E+L++M+   C PD   Y  +         L     +  +M+       V  +
Sbjct: 513 GRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMF 572

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            + I G     +  + +++  EM   G+  +   YG LI G   EG + +AC+L  ++V+
Sbjct: 573 NSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVN 632

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G   ++ I ++++    +  + D+A  + +  V  D+ P  S      +   E+ ++ +
Sbjct: 633 NGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCS------ISTIEIDKISH 686

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYNIL 418
               +A       +V  ++     F + K  RI  A  +FE L+ K +  +P    Y+ L
Sbjct: 687 VVDTIADGNPHSANVMWNV---IIFGLCKSGRIADAKSLFESLRNKRF--LPDNFTYSSL 741

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +      G + +A  L   M    L  N ++++  I    +SG +  A    NK+     
Sbjct: 742 IHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGI 801

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEK 536
            P+   YN L    CK G+   A  L +     V  G  PT   Y++ I  +C  G  E+
Sbjct: 802 SPNGITYNTLIDEYCKEGKTTEAFKLKQKM---VEEGIQPTVITYSILIYGLCTQGYMEE 858

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
            I++L++M +    PN +    +I G  K G +EE  K++  +  R LL
Sbjct: 859 AIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLL 907



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/470 (20%), Positives = 210/470 (44%), Gaps = 15/470 (3%)

Query: 117 VTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVP 175
           +TP L+   L+ V  +P  A   F  A  +     +  S+  L + L+R   F  A    
Sbjct: 68  LTPALLQAALRRVRLDPDAALHLFRLAPSRP----SLVSHAQLLHILARARRFHDARA-- 121

Query: 176 ELMDSQGRIAE-MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
            L+ S    AE +   L ++ R+     V ++  ++R  A    L + L V++ M K   
Sbjct: 122 -LLSSLPPHAEPLFPHLAEVYRDFTFSAV-SFDLLLRAHADAGQLSSALNVFDGMGKVGC 179

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
              + +   L+  L + G       ++ +M+  G+L D     ++ +    +G+V +A +
Sbjct: 180 RPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVE 239

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
            ++++   G   +L  Y++++   C +   + A ++ E   +  L+P+  T   L+    
Sbjct: 240 FVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYC 299

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKG-YSS 411
           + GRM+   +++ +M++    +  D   +   + G  +R  M  A  V  E++  G + +
Sbjct: 300 KDGRMEEAERVVKEMKETG-DIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVN 358

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           + +YN ++  L ++G +++   +  +M  + +  +  S++  I  +   G + +A E   
Sbjct: 359 LFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCR 418

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
            ++      +   YN L KG C +  ID A+ L    L      P E   +  +  + ++
Sbjct: 419 MMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKR-GVAPNEISCSTLLDGLFKA 477

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           G+ E+ + +  E    G   N +  + +I+G+CK G + EA ++   ++E
Sbjct: 478 GKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKE 527



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 134/327 (40%), Gaps = 60/327 (18%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK--------- 231
           +G + E   +  +M  N   P+VF  +A++     E  +D    V +++           
Sbjct: 617 EGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSI 676

Query: 232 DLVEADVMAYVT-----------------LIMGLCKGGRVVRGHELFREMKENGILIDRA 274
             +E D +++V                  +I GLCK GR+     LF  ++    L D  
Sbjct: 677 STIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNF 736

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
            Y  LI G    G + +A  L   ++ +G   ++  YNS+I GLC+  +  +A  LF   
Sbjct: 737 TYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKL 796

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI 394
               ++P+  T N L+    + G+    FKL  +M                     EE I
Sbjct: 797 QSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKM--------------------VEEGI 836

Query: 395 MMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
                           +V  Y+IL+  L   G +++A+ L  +M   N++ N +++   I
Sbjct: 837 Q--------------PTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLI 882

Query: 455 QCHVESGDILEACECHNKIIEMSQVPS 481
             +++SG++ E  + ++++     +P+
Sbjct: 883 HGYIKSGNMEEISKLYDEMHIRGLLPT 909



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 71/153 (46%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           + G I E   + + M      P++  Y ++I  L     L   + ++ +++   +  + +
Sbjct: 747 ASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGI 806

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TLI   CK G+     +L ++M E GI      Y +LI GL  +G + +A  LL  +
Sbjct: 807 TYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQM 866

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
           +++    +   Y ++I G  +    ++  KL++
Sbjct: 867 IENNVDPNYITYCTLIHGYIKSGNMEEISKLYD 899



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 3/152 (1%)

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
           +   +++SF + ++ H ++G +  A    + + ++   PS+ + N L   L + G+   A
Sbjct: 143 DFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMA 202

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
            M V   +      P EF  A+     CR G   + +E + EM   G   N V   A++ 
Sbjct: 203 AM-VYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMD 261

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
             C  G  E+AR++  +L+ + L    N + Y
Sbjct: 262 CYCGMGWTEDARRILESLQRKGL--SPNVVTY 291



 Score = 46.2 bits (108), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 19/143 (13%)

Query: 147 GYKHNFASYNALAYCLSRNN-LFRAADQVPELMDS------------------QGRIAEM 187
           G   N  +YN+L Y L ++  L RA +   +L                     +G+  E 
Sbjct: 765 GLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEA 824

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            ++ +KM     +P V  Y+ +I  L  +  ++  +++ ++M ++ V+ + + Y TLI G
Sbjct: 825 FKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHG 884

Query: 248 LCKGGRVVRGHELFREMKENGIL 270
             K G +    +L+ EM   G+L
Sbjct: 885 YIKSGNMEEISKLYDEMHIRGLL 907


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 176/377 (46%), Gaps = 5/377 (1%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C PD   Y  MI  L+    LD  +R+ EEM  +    +V +Y T++ G CK  RV    
Sbjct: 40  CPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENAL 99

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L  +M   G   D   Y  +I GL    +V +AC ++  ++  G + ++  Y +++ G 
Sbjct: 100 WLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGF 159

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           CRV   D A +L     +    P+  T N ++       ++D+  +L  +ME+   S   
Sbjct: 160 CRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEE-SGSCPP 218

Query: 379 DLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
           D+  +   +  + K  ++  A  + E +  KG S +V  Y+ L+  L + G++ +A  L 
Sbjct: 219 DVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALL 278

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M       N ++++  I  H + G I EA     ++++    P+V  Y  L    CK 
Sbjct: 279 QRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKC 338

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G+ + A+ LV + +      P  F Y   +   C+  E E+  ++L+ M Q+GC PN V 
Sbjct: 339 GKAEDAIGLV-EVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVS 397

Query: 556 CSAIISGMCKHGTLEEA 572
            + +I+G+CK   + E 
Sbjct: 398 YNTVIAGLCKATKVHEG 414



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 207/466 (44%), Gaps = 47/466 (10%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ + + +LE+M  N   P+VF+Y  ++        ++  L + E+M       DV++Y 
Sbjct: 59  RLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYT 118

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           T+I GLCK  +V     +  +M + G   +   YG L++G    G +  A +L++ + + 
Sbjct: 119 TVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTER 178

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLF------------------------------- 331
           GYR +   YN+I+ GLC  ++ D A +LF                               
Sbjct: 179 GYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDD 238

Query: 332 -----EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
                E  V    +P+  T + LL    + G++D    LL +M   +   + ++  +   
Sbjct: 239 ACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMT--RSGCSPNIVTYNTI 296

Query: 387 LVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           + G  K  RI  A  + EE+   G   +V  Y +L+ A  + G+ + A+ L   M     
Sbjct: 297 IDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGY 356

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             N  +++  +    +  ++  AC+  + +I+   VP+V +YN +  GLCK  ++   ++
Sbjct: 357 VPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVL 416

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L+   L N    P    +   I  +C++   +   E+ N + + GC PN V  ++++ G+
Sbjct: 417 LLEQMLSNNCV-PDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGL 475

Query: 564 CKHGTLEEARKVFTNLRE--RKLLTEANTIVYDEILIEHMKKKTAD 607
           CK    ++A  +   LRE  RK     + I Y+ ++    K K  D
Sbjct: 476 CKSRRFDQAEYL---LREMTRKQGCSPDIITYNTVIDGLCKSKRVD 518



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/477 (22%), Positives = 211/477 (44%), Gaps = 29/477 (6%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQV-----------------PELMDS---QGRI 184
           ++GY+ N  +YN + + L       +A Q+                   ++DS    G++
Sbjct: 177 ERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKV 236

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            +   ++E M    C P+V  Y++++  L     LD    + + M +     +++ Y T+
Sbjct: 237 DDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTI 296

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK GR+   + L  EM + G   +   Y VL++     GK   A  L++ +V+ GY
Sbjct: 297 IDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGY 356

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             +L  YNS++   C+  + ++A +L    +Q    P+  + N ++    +  ++     
Sbjct: 357 VPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVL 416

Query: 365 LLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
           LL QM  L  +   D+  F   +  + K  R+ +A ++F  ++  G + ++  YN L+  
Sbjct: 417 LLEQM--LSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHG 474

Query: 422 LLEIGEVKKALYLFGKM-RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           L +     +A YL  +M R      + ++++  I    +S  +  A +   +++     P
Sbjct: 475 LCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAP 534

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
               Y+ +   LCK   +D A  ++   L N    P    Y   I   C++G  +K +E+
Sbjct: 535 DDVTYSIVISSLCKWRFMDEANNVLELMLKN-GFDPGAITYGTLIDGFCKTGNLDKALEI 593

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           L  +  +G  P+ V  S  I  + K G L +A ++   +    L+   +T+ Y+ +L
Sbjct: 594 LQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLV--PDTVTYNTLL 648



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/441 (22%), Positives = 190/441 (43%), Gaps = 23/441 (5%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            KG   N  +Y++L + L +                 G++ E   +L++M R+ C P++ 
Sbjct: 248 SKGCSPNVVTYSSLLHGLCK----------------AGKLDEATALLQRMTRSGCSPNIV 291

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  +I        +D    + EEM     + +V+ Y  L+   CK G+      L   M
Sbjct: 292 TYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVM 351

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            E G + +   Y  L++    + +V +AC LL  ++  G   ++  YN++I GLC+  + 
Sbjct: 352 VEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKV 411

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +   L E  + ++  PD  T N ++    +  R+D  ++L   +++       +L  + 
Sbjct: 412 HEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQE--SGCTPNLVTYN 469

Query: 385 EFLVG--KEERIMMALDVFEELKGKGYSSVPI--YNILMGALLEIGEVKKALYLFGKMRG 440
             + G  K  R   A  +  E+  K   S  I  YN ++  L +   V +A  LF +M  
Sbjct: 470 SLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLS 529

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             L  + +++SI I    +   + EA      +++    P    Y  L  G CK G +D 
Sbjct: 530 DGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDK 589

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A+ +++  L    S P    +++ I  + + G   +  E+L  M + G  P+ V  + ++
Sbjct: 590 ALEILQLLLSK-GSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLL 648

Query: 561 SGMCKHGTLEEARKVFTNLRE 581
            G C     E+A  +F  +R+
Sbjct: 649 KGFCDASRTEDAVDLFEVMRQ 669



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 182/403 (45%), Gaps = 16/403 (3%)

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           M +  ++A    + +++ GLC  G+       FREM +     D   Y  +I GL    +
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT-CPPDSVTYNTMINGLSKSDR 59

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           +  A  LL+++VD+G+  ++  YN+++ G C+  + + A  L E  V     PD  +   
Sbjct: 60  LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTT 119

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKG 406
           ++    ++ ++D   +++ +M  ++     ++  +   + G  +   +  A+++  ++  
Sbjct: 120 VINGLCKLDQVDEACRVMDKM--IQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTE 177

Query: 407 KGYSSVPI-YNILMGALLEIGEVKKALYLFGKM-RGLNLEVNSLSFSIAIQCHVESGDIL 464
           +GY    I YN +M  L    ++  AL LF +M    +   +  ++S  +   V+SG + 
Sbjct: 178 RGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVD 237

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
           +AC     ++     P+V  Y+ L  GLCK G++D A  L++  +      P    Y   
Sbjct: 238 DACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQR-MTRSGCSPNIVTYNTI 296

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           I   C+ G  ++   +L EM   GC PN V  + ++   CK G  E+A  +   + E+  
Sbjct: 297 IDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGY 356

Query: 585 LTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
           +   N   Y+ +L    KK   +      +   L S +  KGC
Sbjct: 357 V--PNLFTYNSLLDMFCKKDEVE------RACQLLSSMIQKGC 391



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 174/387 (44%), Gaps = 16/387 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  + + ++E M      P++F Y +++ +   +  ++   ++   M +     +V++Y
Sbjct: 339 GKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSY 398

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T+I GLCK  +V  G  L  +M  N  + D   +  +I+ +    +V  A +L   + +
Sbjct: 399 NTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQE 458

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKA-YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           SG   +L  YNS++ GLC+ ++FD+A Y L E+T +   +PD  T N ++    +  R+D
Sbjct: 459 SGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVD 518

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIM-MALDVFEELKGKGYSSVPI-YN 416
             +KL  QM  L   +A D +  +  ++    + R M  A +V E +   G+    I Y 
Sbjct: 519 RAYKLFLQM--LSDGLAPD-DVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYG 575

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+    + G + KAL +   +       + ++FSI I    + G + +A E    ++  
Sbjct: 576 TLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRA 635

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMML---VRDCLGNVASGPTEFKYALTILH-VCRSG 532
             VP    YN L KG C     + A+ L   +R C       P    Y   + H V +  
Sbjct: 636 GLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQC----GCEPDNATYTTLVGHLVDKKS 691

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAI 559
             + + EV   M   G   N  + S +
Sbjct: 692 YKDLLAEVSKSMVDTGFKLNHELSSKL 718



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 15/228 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G   N  +YN+L + L ++  F  A+ +               + E  R+  C PD+
Sbjct: 457 QESGCTPNLVTYNSLVHGLCKSRRFDQAEYL---------------LREMTRKQGCSPDI 501

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  +I  L   + +D   +++ +M  D +  D + Y  +I  LCK   +   + +   
Sbjct: 502 ITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLEL 561

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M +NG       YG LI+G    G + KA ++L+ L+  G   D+  ++  I  L +  +
Sbjct: 562 MLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGR 621

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
             +A +L E  ++  L PD  T N LL    +  R ++   L   M +
Sbjct: 622 LRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQ 669


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 124/538 (23%), Positives = 219/538 (40%), Gaps = 59/538 (10%)

Query: 68  KTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLK 127
           K+ SP    K  + +++            R   +   P V   + K R   P LVA    
Sbjct: 6   KSLSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFHHILK-RLFDPKLVAHAYA 64

Query: 128 VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEM 187
             + P  A   F    +  G +    SYN+L   L  +N +  A+      ++ G     
Sbjct: 65  KNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMG----- 119

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
                        P++  Y  +I++   ++  D    +   M       DV +Y TLI  
Sbjct: 120 -----------LSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINS 168

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS-GYRA 306
           L K G +    +LF EM E G+  D A Y +LI+G   +G +  A ++ + L+       
Sbjct: 169 LAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYP 228

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           ++  YN +I GLC+  +FD++++++    +++   D  T + L+      G +D      
Sbjct: 229 NIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDG----- 283

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
                                         A  V++E+   G S  V +YN ++   L  
Sbjct: 284 ------------------------------ATRVYKEMAENGVSPDVVVYNTMLNGYLRA 313

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G +++ L L+  M         +S++I I+   E+  + EA      + E         Y
Sbjct: 314 GRIEECLELWKVMEKEGCRT-VVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTY 372

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
             L  GLCK G ++ A+ ++ +         T F Y+  I  +CR G  +++  VL++MT
Sbjct: 373 GVLVHGLCKNGYLNKALSILEEAENGRGDLDT-FAYSSMINGLCREGRLDEVAGVLDQMT 431

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           + GC PN  +C+A+I+G  +   LE+A + F N+  +       T+V    LI  + K
Sbjct: 432 KHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFP---TVVTYNTLINGLSK 486



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 117/489 (23%), Positives = 217/489 (44%), Gaps = 36/489 (7%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA----DQVPE------------LM 178
           A +  +W   Q G+  +  SY  L   L++N     A    D++PE            L+
Sbjct: 143 AKELLNWMWGQ-GFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILI 201

Query: 179 DS---QGRIAEMLEILEKMRRN-LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
           D    +G I    EI E++ +     P++ +Y  MI  L      D    +W  MKK+  
Sbjct: 202 DGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNER 261

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
             D+  Y TLI GLC  G +     +++EM ENG+  D  +Y  ++ G +  G++ +  +
Sbjct: 262 GQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLE 321

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           L K +   G R  +  YN +I GL    + D+A  ++E+  + D   D  T   L+    
Sbjct: 322 LWKVMEKEGCRTVVS-YNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLC 380

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKF-FEFLVG---KEERIMMALDVFEELKGKGYS 410
           + G ++    +L + E  +     DL+ F +  ++    +E R+     V +++   G  
Sbjct: 381 KNGYLNKALSILEEAENGR----GDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCK 436

Query: 411 SVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
             P + N ++   +   +++ AL  FG M         ++++  I    ++    EA   
Sbjct: 437 PNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYAL 496

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH-V 528
             ++++    P++  Y+ L  GLC+  ++D A+ L   C         + K    I+H +
Sbjct: 497 VKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLW--CQALEKGFKPDVKMHNIIIHGL 554

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C SG+ E  +++ +EM Q  C PN V  + ++ G  K    E A K++ ++ +  L  + 
Sbjct: 555 CSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGL--QP 612

Query: 589 NTIVYDEIL 597
           + I Y+  L
Sbjct: 613 DIISYNITL 621



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 157/331 (47%), Gaps = 6/331 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI E LE+ + M +  C+  V +Y  +IR L     +D  + +WE + +    AD M Y
Sbjct: 314 GRIEECLELWKVMEKEGCRT-VVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTY 372

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLCK G + +   +  E +     +D   Y  +I GL  EG++ +   +L  +  
Sbjct: 373 GVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTK 432

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + +  + N++I G  R  + + A + F   V     P   T N L+   ++  R   
Sbjct: 433 HGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSE 492

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
            + L+ +M  L+     ++  +   + G  + +++ MAL+++ +   KG+   V ++NI+
Sbjct: 493 AYALVKEM--LQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNII 550

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L   G+V+ AL L+ +M+  N   N ++ +  ++   +  D   A +  + I++   
Sbjct: 551 IHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGL 610

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
            P + +YN   KGLC    I  A+  + D +
Sbjct: 611 QPDIISYNITLKGLCSCHRISDAVGFLNDAV 641



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 122/263 (46%), Gaps = 5/263 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E+  +L++M ++ CKP+ +   A+I        L+  LR +  M        V+ 
Sbjct: 417 EGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVT 476

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI GL K  R    + L +EM + G   +   Y +L+ GL    K+  A +L    +
Sbjct: 477 YNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQAL 536

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G++ D+ ++N II GLC   + + A +L+    Q +  P+  T N L+    ++   +
Sbjct: 537 EKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFE 596

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNI 417
              K+   +  L++ +  D+  +   L G     RI  A+    +   +G     I +NI
Sbjct: 597 RASKIWDHI--LQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNI 654

Query: 418 LMGALLEIGEVKKALYLFGKMRG 440
           L+   L +    + +++   M+G
Sbjct: 655 LVQGYLALKGYMEPVFVPASMKG 677



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/160 (16%), Positives = 72/160 (45%), Gaps = 19/160 (11%)

Query: 145 QKGYKHNFASYNALA---------------YCLSRNNLFRAADQVPEL----MDSQGRIA 185
           QKG+K N  +Y+ L                +C +    F+   ++  +    + S G++ 
Sbjct: 502 QKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVE 561

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + L++  +M++  C P++  +  ++      R+ +   ++W+ + +  ++ D+++Y   +
Sbjct: 562 DALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITL 621

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285
            GLC   R+        +  + G+L     + +L++G + 
Sbjct: 622 KGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVQGYLA 661


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 124/529 (23%), Positives = 230/529 (43%), Gaps = 61/529 (11%)

Query: 87  PIARFITDAFRK--NQFQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAG 143
           P +R + + F +    F+WGP     L  L+ +V P LV E+LK++   ++  +FF WAG
Sbjct: 50  PYSRTLDERFIRILKIFKWGPDAEKALEVLKLKVDPRLVREILKIDVEVSVKIQFFKWAG 109

Query: 144 KQKGYKHNFASYNALAYCLSRNNLF----------------RAADQVPELMDSQGR---I 184
           K++ ++H+  +Y AL  CL  + +F                 A  ++ E++   G+   +
Sbjct: 110 KRRNFEHDSTTYMALIRCLDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIVRILGKAKMV 169

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMAYVT 243
              L +  +++   C+P    Y ++I +L  E + +    ++ EM  ++    D + Y  
Sbjct: 170 NRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSA 229

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           LI    K  R      LF EMKENG+     IY  L+      GKV +A  L+K++    
Sbjct: 230 LISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARR 289

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
               +  Y  +I GL +  + + AY  ++  ++D   PD   +N L+             
Sbjct: 290 CLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLIN------------ 337

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGAL 422
                                  ++G+   +  A+ +F+E+K    + +V  YN ++ +L
Sbjct: 338 -----------------------ILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSL 374

Query: 423 LEI-GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
            E    + +A   F +M+   +  +S ++SI I  + ++  + +A     ++ E    P 
Sbjct: 375 FEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPC 434

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
            AAY  L   L      D A  L ++   N         YA+ I H  + G   + I + 
Sbjct: 435 PAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARV-YAVMIKHFGKCGRLNEAINLF 493

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           NEM + GC P+    +A+++GM +   ++EA  +F  + E     + N+
Sbjct: 494 NEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDINS 542



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 178/407 (43%), Gaps = 17/407 (4%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C PD   Y+A+I   A     D+ +R+++EMK++ ++     Y TL+    K G+V    
Sbjct: 220 CFPDTVTYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEAL 279

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L +EM+    L+    Y  LI GL   G+V  A    K+++  G + D+ + N++I  L
Sbjct: 280 GLVKEMRARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINIL 339

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE----MGRMDNFFKLLAQMEKLKF 374
            R      A KLF+     + AP+  T N ++    E    +    ++F      E++K 
Sbjct: 340 GRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWF------ERMKK 393

Query: 375 SVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKK 430
                    +  L+    K  R+  AL + EE+  KG+   P  Y  L+  L        
Sbjct: 394 DGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDV 453

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A  LF +++      ++  +++ I+   + G + EA    N++ ++   P V AYN L  
Sbjct: 454 ANELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMT 513

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           G+ +   +D A  L R    N    P    + + +  + R+G  +  +E+  +M      
Sbjct: 514 GMVRAERMDEAFSLFRTMEEN-GCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIK 572

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           P+ V  + I+  + + G  EEA K+   +  +    + + I Y  IL
Sbjct: 573 PDVVSFNTILGCLSRAGLFEEAAKLMQEMSSKGF--QYDLITYSSIL 617



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 153/331 (46%), Gaps = 9/331 (2%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +   GR+ +     + M ++ CKPDV     +I +L    +L   +++++EMK      +
Sbjct: 304 LGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPN 363

Query: 238 VMAYVTLIMGLCKG-GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           V+ Y T+I  L +    +      F  MK++GI+     Y +LI+G     +V KA  LL
Sbjct: 364 VVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLL 423

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
           +++ + G+      Y S+I  L   K++D A +LF+   ++           ++    + 
Sbjct: 424 EEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFGKC 483

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVP 413
           GR++    L  +M+KL      D+  +   + G  + ER+  A  +F  ++  G +  + 
Sbjct: 484 GRLNEAINLFNEMKKL--GCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDIN 541

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            +NI++  L   G  K AL +F KM+   ++ + +SF+  + C   +G   EA +   ++
Sbjct: 542 SHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAKLMQEM 601

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
                   +  Y+ + +    +G++D   M+
Sbjct: 602 SSKGFQYDLITYSSILEA---VGKVDDCKMV 629



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 122/259 (47%), Gaps = 5/259 (1%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           +  L +++  ++E     E+M+++   P  F Y+ +I        ++  L + EEM +  
Sbjct: 371 IKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKG 430

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
                 AY +LI  L    R    +ELF+E+KEN       +Y V+I+     G++ +A 
Sbjct: 431 FPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAI 490

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           +L  ++   G   D+  YN+++ G+ R ++ D+A+ LF    ++   PD ++ N +L   
Sbjct: 491 NLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGL 550

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS- 410
           A  G      ++  +M+    ++  D+  F   L  + +      A  + +E+  KG+  
Sbjct: 551 ARTGGPKGALEMFTKMK--NSTIKPDVVSFNTILGCLSRAGLFEEAAKLMQEMSSKGFQY 608

Query: 411 SVPIYNILMGALLEIGEVK 429
            +  Y+ ++ A+ ++ + K
Sbjct: 609 DLITYSSILEAVGKVDDCK 627


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 118/459 (25%), Positives = 206/459 (44%), Gaps = 41/459 (8%)

Query: 134 LASKFFHWAG-KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
           L   F  +AG  ++GY  N  +YN L   L                  + RI+E   +  
Sbjct: 120 LREGFAAFAGILRRGYSPNIVTYNTLIKGLCM----------------EHRISEATRLFL 163

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL------VEADVMAYVTLIM 246
           +M++  C PDV  Y  +I+ L    N++  L++ +EM  D+       + +V+ Y  ++ 
Sbjct: 164 RMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVD 223

Query: 247 GLCKGGRVVRGHELFREMKENGILI----------DRAIYGVLIEGLVGEGKVGKACDLL 296
           GLCK GR     +LF EMK  G++           D   + VLI+ L  EGKV +A  LL
Sbjct: 224 GLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLL 283

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             +++SG   DL  YNS+I G C V   + A +LF         PD  + N L+   ++ 
Sbjct: 284 GVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKT 343

Query: 357 GRMDNFFKLLAQM---EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SV 412
            +++   KL  +M    K    +  D      FL GK +    A  +F  +K  G + + 
Sbjct: 344 LKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDD---AKKLFSVMKAHGIAENS 400

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             Y I +  L +   + +A+ LF +++  N ++   + +  I    ++G +  A E   K
Sbjct: 401 YTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEK 460

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           +      P+V  Y  +  G C+ G++D A +L++    N    P    Y   +     S 
Sbjct: 461 LSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEAN-GCTPDIITYNTLMRGFYESN 519

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
           + E+++++L+ M Q+   P+ + CS ++  + K    +E
Sbjct: 520 KLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQE 558



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 114/490 (23%), Positives = 213/490 (43%), Gaps = 35/490 (7%)

Query: 132 PTLAS--KFFHWAGKQKGYKHNFASYNALAYC-LSRNNLFRAADQVPELMDSQGRIAEML 188
           P+L+S         K K Y   F+ YN +    LS +      + +   + +  R+ E  
Sbjct: 67  PSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRC--TLNILLNCLCNVNRLREGF 124

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
                + R    P++  Y  +I+ L  E  +    R++  M+K     DV+ Y TLI GL
Sbjct: 125 AAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGL 184

Query: 249 CKGGRVVRGHELFREMKENGILIDR---------AIYGVLIEGLVGEGKVGKACDLLK-- 297
           C  G +    +L +EM  +   I R           Y ++++GL   G+  +A  L +  
Sbjct: 185 CGTGNINIALKLHQEMLND---ISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEM 241

Query: 298 --------DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
                   +++D G + D+  +N +I  LC+  +  +A KL  V ++  + PD  T N L
Sbjct: 242 KTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSL 301

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGK 407
           +     +G +++  +L   M         D+  +   + G  K  ++  A+ ++ E+   
Sbjct: 302 IEGFCMVGDLNSARELFVSMPSK--GCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLV 359

Query: 408 GYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           G   +V  Y+ L+  +   G+V  A  LF  M+   +  NS ++ I +    ++  + EA
Sbjct: 360 GKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEA 419

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
            +   ++   +    +   NCL  GLCK G+++ A  L    L N    P    Y + I 
Sbjct: 420 MKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEK-LSNEGHEPNVVTYTIMIH 478

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
             CR G+ +K   ++ +M   GC P+ +  + ++ G  +   LEE  ++   + ++ +  
Sbjct: 479 GFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSP 538

Query: 587 EANT--IVYD 594
           +A T  IV D
Sbjct: 539 DAITCSIVVD 548



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 95/436 (21%), Positives = 182/436 (41%), Gaps = 51/436 (11%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L     M R+   P + ++  ++  LA  ++      ++ +M+   + +D      L+  
Sbjct: 54  LHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNC 113

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC   R+  G   F  +   G   +   Y  LI+GL  E ++ +A  L   +   G   D
Sbjct: 114 LCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPD 173

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQD------DLAPDFSTVNPLLVCCAEMGRMDN 361
           +  Y ++I GLC     + A KL +  + D      +  P+  T N ++    ++GR D 
Sbjct: 174 VVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDE 233

Query: 362 FFKLLAQM--------EKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKG-YS 410
             +L  +M        E L   +  D+  F   +  + KE +++ A  +   +   G   
Sbjct: 234 AKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVP 293

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            +  YN L+     +G++  A  LF  M     E + +S+++ I  + ++  + EA + +
Sbjct: 294 DLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLY 353

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV------------------------R 506
           N+++ + + P+V  Y+ L KG+   G++D A  L                          
Sbjct: 354 NEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKN 413

Query: 507 DCLGNVASGPTEFKYALTILHV----------CRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           DCL       TE K +   L +          C++G+ E   E+  +++ EG  PN V  
Sbjct: 414 DCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTY 473

Query: 557 SAIISGMCKHGTLEEA 572
           + +I G C+ G +++A
Sbjct: 474 TIMIHGFCREGQVDKA 489



 Score = 45.8 bits (107), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 79/198 (39%), Gaps = 19/198 (9%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNN-LFRAADQVPELMDSQGRIAEMLEILEK 193
           A K F    K  G   N  +Y      L +N+ LF A     EL  S  ++   +E L  
Sbjct: 384 AKKLFSVM-KAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLE--IENLNC 440

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           +   LCK                  L+    ++E++  +  E +V+ Y  +I G C+ G+
Sbjct: 441 LIDGLCKAG---------------KLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQ 485

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           V + + L ++M+ NG   D   Y  L+ G     K+ +   LL  +       D    + 
Sbjct: 486 VDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSI 545

Query: 314 IIGGLCRVKQFDKAYKLF 331
           ++  L + +++ +   L 
Sbjct: 546 VVDMLSKDEKYQECLHLL 563


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 143/621 (23%), Positives = 259/621 (41%), Gaps = 90/621 (14%)

Query: 23  QNRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQ 82
           QN  +V G L          N +S+PH S  F V                P+  + FQ  
Sbjct: 14  QNHSSVLGFL----------NFSSKPHISSHFAV----------------PASREPFQ-- 45

Query: 83  RHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDL----VAEVLKVENNPTLASKF 138
              + ++R      R    QW        S+L++++P L    VAE++ V  +     +F
Sbjct: 46  ---AIVSRVCAILSR---VQWKGS-----SELKQLSPQLKAHHVAEIVAVHKDTESVIQF 94

Query: 139 FHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM-------DSQGRIAEMLEIL 191
           F+W  K+  YKHN   + ++   L R+ +F  AD +  LM       +   R+A+ L  +
Sbjct: 95  FYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEI 154

Query: 192 EKM------------------------RRNLCK--------PDVFAYTAMIRVLAAERNL 219
             M                         RNL K        P +  +  +I +L+ +  +
Sbjct: 155 SGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKV 214

Query: 220 DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL 279
                +  ++ +  +  DV  Y +LI+G C+   +     +F  M + G   +   Y  L
Sbjct: 215 REAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 274

Query: 280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339
           I GL  EG+V +A D+L+++++ G    +  Y   I  LC ++  ++A +L     +   
Sbjct: 275 INGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGC 334

Query: 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKLKFSVAADLEKFFEFLVGKEERIMMA 397
            P+  T   L+   + +G+++    L  +M  E L  +         E  VG   R   A
Sbjct: 335 RPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGG--RFSTA 392

Query: 398 LDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
           L +F  ++G G  ++   YN ++  L   G+++KA+ LF KM  +      ++++  I  
Sbjct: 393 LKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLING 452

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
           ++  G++  A    + + E    P    YN L  G  K G++++A    ++ +      P
Sbjct: 453 YLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMV-ECGLNP 511

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
               Y   I    + G+ +  + +L  M + GC PN    +A+I+G+ K     EA K+ 
Sbjct: 512 NPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKIC 571

Query: 577 TNLRERKLLTEANTIVYDEIL 597
             + E+ LL   N I Y  ++
Sbjct: 572 DKMVEQGLL--PNVITYTTLI 590



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 207/447 (46%), Gaps = 25/447 (5%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           ++  +G++ E   IL ++ +    PDVF YT++I      RNLD    V++ M K+  + 
Sbjct: 207 ILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDP 266

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           + + Y TLI GLC  GRV    ++  EM E GI      Y + I  L       +A +L+
Sbjct: 267 NSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELV 326

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             +   G R ++  Y ++I GL R+ + + A  L+   +++ L P+  T N L+      
Sbjct: 327 ARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVG 386

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVP 413
           GR     K+   ME       A+ + + E + G      I  A+ +FE++   G   +V 
Sbjct: 387 GRFSTALKIFHWME--GHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVV 444

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN L+   L  G V  A  L   M+    E +  +++  +    + G +  A     ++
Sbjct: 445 TYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM 504

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC---R 530
           +E    P+  +Y  L  G  K G++D A+ L++  +  +   P    Y   I  +    R
Sbjct: 505 VECGLNPNPVSYTALIDGHSKDGKVDIALSLLKR-MEEMGCNPNVESYNAVINGLSKENR 563

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             EAEKI +   +M ++G  PN +  + +I G+C++G  + A K+F ++ +RK L    T
Sbjct: 564 FSEAEKICD---KMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYT 620

Query: 591 ---IVYD----------EILIEHMKKK 604
              ++Y           EIL++ M++K
Sbjct: 621 YSSLIYGLCQEGKADEAEILLKEMERK 647



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 184/401 (45%), Gaps = 16/401 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++GR+ E L++LE+M     +P V+ YT  I  L A  + +  + +   MKK     +V 
Sbjct: 280 NEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQ 339

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI GL + G++     L+ +M + G++ +   Y  LI  L   G+   A  +   +
Sbjct: 340 TYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWM 399

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G  A+   YN II GLC     +KA  LFE  ++    P   T N L+      G +
Sbjct: 400 EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNV 459

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YN 416
           +N  +LL  M++       D   + E + G  K  ++  A   F+E+   G +  P+ Y 
Sbjct: 460 NNAARLLDLMKE--NGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYT 517

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+    + G+V  AL L  +M  +    N  S++  I    +     EA +  +K++E 
Sbjct: 518 ALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQ 577

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-----CLGNVASGPTEFKYALTILHVCRS 531
             +P+V  Y  L  GLC+ G    A  +  D     CL      P  + Y+  I  +C+ 
Sbjct: 578 GLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCL------PNLYTYSSLIYGLCQE 631

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           G+A++   +L EM ++G  P+EV  +++I G    G ++ A
Sbjct: 632 GKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHA 672



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 152/344 (44%), Gaps = 26/344 (7%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQV 174
           VT + +   L V    + A K FHW  +  G   N  +YN +    CL            
Sbjct: 374 VTYNALINELCVGGRFSTALKIFHWM-EGHGSLANTQTYNEIIKGLCLG----------- 421

Query: 175 PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
                  G I + + + EKM +    P V  Y  +I     + N++   R+ + MK++  
Sbjct: 422 -------GDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGC 474

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           E D   Y  L+ G  K G++      F+EM E G+  +   Y  LI+G   +GKV  A  
Sbjct: 475 EPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALS 534

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           LLK + + G   ++  YN++I GL +  +F +A K+ +  V+  L P+  T   L+    
Sbjct: 535 LLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLC 594

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSV 412
             GR    FK+   MEK K     +L  +   + G  +E +   A  + +E++ KG +  
Sbjct: 595 RNGRTQFAFKIFHDMEKRK--CLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPD 652

Query: 413 PI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
            + +  L+   + +G +  A  L  +M  +  + N  ++S+ ++
Sbjct: 653 EVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLK 696



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 16/175 (9%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G   N  SYNA+   LS+ N F  A+++ + M  QG +                P+V
Sbjct: 540 EEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLL----------------PNV 583

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT +I  L          +++ +M+K     ++  Y +LI GLC+ G+      L +E
Sbjct: 584 ITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKE 643

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           M+  G+  D   +  LI+G V  G++  A  LL+ +VD G + +   Y+ ++ GL
Sbjct: 644 MERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGL 698


>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 687

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 201/451 (44%), Gaps = 14/451 (3%)

Query: 177 LMDSQGR-IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           L++++GR     L  L++ + +    D  +Y   I   +  R     +R+  EM  + V 
Sbjct: 83  LLEAKGRDWRTALAALDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREMPTEGVT 142

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREM--KENGILIDRAIYGVLIEGLVGEGKVGKAC 293
            DV+ Y + I    KGGR     +L  +M     GI  D   Y   I      G+  +A 
Sbjct: 143 PDVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAM 202

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           DLL+ +V  G   +L  YNS IG   + +++++A  L E  ++    P   T NP++  C
Sbjct: 203 DLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDAC 262

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV--GKEERIMMALDVFEELKGKGYS- 410
           A+ GR      LL QM  L   + AD+  +   +   G+  R   A+D+ E+++ +G S 
Sbjct: 263 AKGGRWLEAMDLLGQM--LTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSP 320

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           +V  YN  + A  +    K+AL L  +M  + L    +S++ A      +G  +EA E  
Sbjct: 321 NVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALELL 380

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
            ++      P+  +YN       K G+ + A+ L+R  +  V S P    +   I    R
Sbjct: 381 KEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRG-MSTVGSDPDIISFNSAIDACGR 439

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             + E  +E+L EM   G  PN +  ++ I    +    +EA  +F  +  R L    N 
Sbjct: 440 GQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGL--SPNV 497

Query: 591 IVYDEILIEHMKKKTADL---VLSGLKFFGL 618
           + Y+ ++    K +  +L   +L+G+   G+
Sbjct: 498 VTYNSMIDACAKGEQWELAVQLLTGMPARGV 528



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/413 (24%), Positives = 175/413 (42%), Gaps = 8/413 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR  E +++L +M  N    DV +Y+++I      R     + + E+M+   V  +V++Y
Sbjct: 266 GRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISY 325

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            + I    KG R     +L REM   G++     Y          G+  +A +LLK++  
Sbjct: 326 NSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPA 385

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFE--VTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            G   +   YNS +    +  Q++KA KL     TV  D  PD  + N  +  C    + 
Sbjct: 386 QGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSD--PDIISFNSAIDACGRGQQW 443

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
           +   +LL +M     +             G+  R   A+ +F E+  +G S +V  YN +
Sbjct: 444 ETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSM 503

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + A  +  + + A+ L   M    +  + +S++ AI+   +      A +    +     
Sbjct: 504 IDACAKGEQWELAVQLLTGMPARGVAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGP 563

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI- 537
            P + +YN       K G    A+ L++D +  V   P    Y   I H C  GE   + 
Sbjct: 564 KPDIISYNSAVTACAKSGRWREALGLLKD-MATVGLTPNTVSYGAAI-HACGKGEQWDVA 621

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           + +L EM   G  PN +  SA I    K G  +EA  + T+LR + L  +A T
Sbjct: 622 VRILKEMQTHGATPNLITYSAAIDACAKQGRWKEAVDLLTDLRRQGLTPDAQT 674



 Score = 45.4 bits (106), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 39/194 (20%), Positives = 77/194 (39%), Gaps = 19/194 (9%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEM------------------ 187
           +G   N  +YN++    ++   +  A Q+   M ++G   ++                  
Sbjct: 491 RGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVISYNSAIEACGKGEQWEL 550

Query: 188 -LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
            L++L+ M     KPD+ +Y + +   A        L + ++M    +  + ++Y   I 
Sbjct: 551 ALQLLKGMPTRGPKPDIISYNSAVTACAKSGRWREALGLLKDMATVGLTPNTVSYGAAIH 610

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
              KG +      + +EM+ +G   +   Y   I+    +G+  +A DLL DL   G   
Sbjct: 611 ACGKGEQWDVAVRILKEMQTHGATPNLITYSAAIDACAKQGRWKEAVDLLTDLRRQGLTP 670

Query: 307 DLGIYNSIIGGLCR 320
           D   Y ++I    R
Sbjct: 671 DAQTYLTVISAFQR 684


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 143/621 (23%), Positives = 259/621 (41%), Gaps = 90/621 (14%)

Query: 23  QNRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQ 82
           QN  +V G L          N +S+PH S  F V                P+  + FQ  
Sbjct: 56  QNHSSVLGFL----------NFSSKPHISSHFAV----------------PASREPFQ-- 87

Query: 83  RHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDL----VAEVLKVENNPTLASKF 138
              + ++R      R    QW        S+L++++P L    VAE++ V  +     +F
Sbjct: 88  ---AIVSRVCAILSR---VQWKGS-----SELKQLSPQLKAHHVAEIVAVHKDTESVIQF 136

Query: 139 FHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM-------DSQGRIAEMLEIL 191
           F+W  K+  YKHN   + ++   L R+ +F  AD +  LM       +   R+A+ L  +
Sbjct: 137 FYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEI 196

Query: 192 EKM------------------------RRNLCK--------PDVFAYTAMIRVLAAERNL 219
             M                         RNL K        P +  +  +I +L+ +  +
Sbjct: 197 SGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKV 256

Query: 220 DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL 279
                +  ++ +  +  DV  Y +LI+G C+   +     +F  M + G   +   Y  L
Sbjct: 257 REAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 316

Query: 280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339
           I GL  EG+V +A D+L+++++ G    +  Y   I  LC ++  ++A +L     +   
Sbjct: 317 INGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGC 376

Query: 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKLKFSVAADLEKFFEFLVGKEERIMMA 397
            P+  T   L+   + +G+++    L  +M  E L  +         E  VG   R   A
Sbjct: 377 RPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGG--RFSTA 434

Query: 398 LDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
           L +F  ++G G  ++   YN ++  L   G+++KA+ LF KM  +      ++++  I  
Sbjct: 435 LKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLING 494

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
           ++  G++  A    + + E    P    YN L  G  K G++++A    ++ +      P
Sbjct: 495 YLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQE-MVECGLNP 553

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
               Y   I    + G+ +  + +L  M + GC PN    +A+I+G+ K     EA K+ 
Sbjct: 554 NPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKIC 613

Query: 577 TNLRERKLLTEANTIVYDEIL 597
             + E+ LL   N I Y  ++
Sbjct: 614 DKMAEQGLL--PNVITYTTLI 632



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 206/447 (46%), Gaps = 25/447 (5%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           ++  +G++ E   IL ++ +    PDVF YT++I      RNLD    V++ M K+  + 
Sbjct: 249 ILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDP 308

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           + + Y TLI GLC  GRV    ++  EM E GI      Y + I  L       +A +L+
Sbjct: 309 NSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELV 368

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             +   G R ++  Y ++I GL R+ + + A  L+   +++ L P+  T N L+      
Sbjct: 369 ARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVG 428

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVP 413
           GR     K+   ME       A+ + + E + G      I  A+ +FE++   G   +V 
Sbjct: 429 GRFSTALKIFHWME--GHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVV 486

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN L+   L  G V  A  L   M+    E +  +++  +    + G +  A     ++
Sbjct: 487 TYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM 546

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC---R 530
           +E    P+  +Y  L  G  K G++D A+ L+   +  +   P    Y   I  +    R
Sbjct: 547 VECGLNPNPVSYTTLIDGHSKDGKVDIALSLLER-MEEMGCNPNVESYNAVINGLSKENR 605

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             EAEKI +   +M ++G  PN +  + +I G+C++G  + A K+F ++ +RK L    T
Sbjct: 606 FSEAEKICD---KMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYT 662

Query: 591 ---IVYD----------EILIEHMKKK 604
              ++Y           EIL++ M++K
Sbjct: 663 YSSLIYGLCQEGKADEAEILLKEMERK 689



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 187/425 (44%), Gaps = 58/425 (13%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+  +YT +I   + +  +D  L + E M++     +V +Y  +I GL K  R     ++
Sbjct: 553 PNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKI 612

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             +M E G+L +   Y  LI+GL   G+   A  +  D+       +L  Y+S+I GLC+
Sbjct: 613 CDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQ 672

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             + D+A  L +   +  LAPD  T   L+     +GR+D+ F LL +M  +      + 
Sbjct: 673 EGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRM--VDVGCKPNY 730

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFG-KMR 439
             +   L G ++  ++     EE                    ++    +A+Y F    +
Sbjct: 731 RTYSVLLKGLQKECLL----LEE--------------------KVAVQHEAVYSFSPHEK 766

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV---PSVAAYNCLTKGLCKIG 496
            +N E+ S                       N +  MS++   P++  Y+ L  GLC+ G
Sbjct: 767 DVNFEIVS-----------------------NLLARMSEIGCEPTLDTYSTLVSGLCRKG 803

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
               A  LV+D          E  Y+L I H C++ E +  +++ + +  +G   +  I 
Sbjct: 804 RFYEAEQLVKDMKERGFCPDREIYYSLLIAH-CKNLEVDHALKIFHSIEAKGFQLHLSIY 862

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFF 616
            A+I  +CK G +EEA+ +F N+ E++    A+ IV+  ++   +K+   DL +  L   
Sbjct: 863 RALICALCKAGQVEEAQALFDNMLEKEW--NADEIVWTVLVDGLLKEGELDLCMKLLHI- 919

Query: 617 GLESK 621
            +ESK
Sbjct: 920 -MESK 923



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 169/383 (44%), Gaps = 49/383 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G   N  SYNA+   LS+ N F  A+++ + M  QG +                P+V
Sbjct: 582 EEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLL----------------PNV 625

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT +I  L          +++ +M+K     ++  Y +LI GLC+ G+      L +E
Sbjct: 626 ITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKE 685

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR--- 320
           M+  G+  D   +  LI+G V  G++  A  LL+ +VD G + +   Y+ ++ GL +   
Sbjct: 686 MERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECL 745

Query: 321 ------VKQFDKAYKL--------FEVTVQDDLA--------PDFSTVNPLLVCCAEMGR 358
                   Q +  Y          FE+ V + LA        P   T + L+      GR
Sbjct: 746 LLEEKVAVQHEAVYSFSPHEKDVNFEI-VSNLLARMSEIGCEPTLDTYSTLVSGLCRKGR 804

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIY 415
                +L+  M++  F    D E ++  L+   K   +  AL +F  ++ KG+   + IY
Sbjct: 805 FYEAEQLVKDMKERGF--CPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIY 862

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             L+ AL + G+V++A  LF  M       + + +++ +   ++ G+ L+ C     I+E
Sbjct: 863 RALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGE-LDLCMKLLHIME 921

Query: 476 MSQ-VPSVAAYNCLTKGLCKIGE 497
                P++  Y  L + L +IG+
Sbjct: 922 SKNFTPNIQTYVILGRELSRIGK 944



 Score = 38.9 bits (89), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 27/188 (14%)

Query: 85  LSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPD-------LVAEVLKVENNPTLASK 137
           L   +  ++   RK +F    Q+V ++ K R   PD       L+A    +E +  L  K
Sbjct: 789 LDTYSTLVSGLCRKGRFYEAEQLVKDM-KERGFCPDREIYYSLLIAHCKNLEVDHAL--K 845

Query: 138 FFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRN 197
            FH + + KG++ + + Y AL   L +                 G++ E   + + M   
Sbjct: 846 IFH-SIEAKGFQLHLSIYRALICALCK----------------AGQVEEAQALFDNMLEK 888

Query: 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
               D   +T ++  L  E  LD C+++   M+      ++  YV L   L + G+ +  
Sbjct: 889 EWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIES 948

Query: 258 HELFREMK 265
             L  ++K
Sbjct: 949 EPLADKLK 956


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/474 (23%), Positives = 216/474 (45%), Gaps = 26/474 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNL---------------FRAADQV-PELMDSQGR---I 184
           ++ G+  N  SYN L + L ++                 FR + Q    LM   G+   I
Sbjct: 180 REFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDI 239

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
             ++ +L++M     KP+V+ +T  IRVL     ++    + + M  +    DV+ Y  L
Sbjct: 240 DSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVL 299

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC   ++    E+F +MK      DR  Y  L++       +        ++   G+
Sbjct: 300 IDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGH 359

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  +  ++  LC+   F +A+   +V     + P+  T N L+     + R+D+  +
Sbjct: 360 VPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALE 419

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
           L   ME L     A     F    GK    + AL+ FE++K KG + ++   N  + +L 
Sbjct: 420 LFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLA 479

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G  ++A  +F  ++ + L  +S+++++ ++C+ + G+I EA +  ++++E    P V 
Sbjct: 480 KAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVI 539

Query: 484 AYNCLTKGLCKIGEIDAAM-MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             N L   L K   +D A  M +R  +  +   PT   Y   +  + ++G+ ++ IE+  
Sbjct: 540 VVNSLINTLYKADRVDEAWKMFMR--MKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFE 597

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIVY 593
            M Q+GCPPN +  + +   +CK+  +  A K+   + +   + +    NTI++
Sbjct: 598 GMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIF 651



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 192/415 (46%), Gaps = 18/415 (4%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
           L KMR      + ++Y  +I +L   R     + V+  M  +     +  Y +L++GL K
Sbjct: 176 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGK 235

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
              +     L +EM+  G+  +   + + I  L   GK+ +A ++LK + D G   D+  
Sbjct: 236 RRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVT 295

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           Y  +I  LC  ++ D A ++FE        PD  T   LL   ++   +D+  +  ++ME
Sbjct: 296 YTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEME 355

Query: 371 K-------LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGAL 422
           K       + F++  D        + K      A D  + ++ +G   ++  YN L+  L
Sbjct: 356 KDGHVPDVVTFTILVD-------ALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGL 408

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
           L +  +  AL LFG M  L ++  + ++ + I  + +SGD + A E   K+      P++
Sbjct: 409 LRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNI 468

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
            A N     L K G    A  +    L ++   P    Y + +    + GE ++ I++L+
Sbjct: 469 VACNASLYSLAKAGRDREAKQIFYG-LKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLS 527

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           EM + GC P+ ++ +++I+ + K   ++EA K+F  ++E KL  +   + Y+ +L
Sbjct: 528 EMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKL--KPTVVTYNTLL 580



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 121/496 (24%), Positives = 208/496 (41%), Gaps = 63/496 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQ----------VPELMDSQ---------GRI 184
           K KG   N  + NA  Y L++    R A Q          VP+ +            G I
Sbjct: 460 KTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEI 519

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E +++L +M  N C+PDV    ++I  L     +D   +++  MK+  ++  V+ Y TL
Sbjct: 520 DEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTL 579

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + GL K G++    ELF  M + G   +   +  L + L    +V  A  +L  ++D G 
Sbjct: 580 LAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGC 639

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  YN+II GL +  Q  +A   F   ++  + PDF T+  LL    +   +++ +K
Sbjct: 640 VPDVFTYNTIIFGLVKNGQVKEAMCFFH-QMKKLVYPDFVTLCTLLPGVVKASLIEDAYK 698

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGK---EERIMMALDVFEELKGKG------------- 408
           ++           A+L  F+E L+G    E  I  A+   E L   G             
Sbjct: 699 IITNFLYNCADQPANL--FWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPII 756

Query: 409 -YS------------------------SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
            YS                         +P YN+L+G LLE   ++ A  +F +++    
Sbjct: 757 RYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGC 816

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             +  +++  +  + +SG I E  E + ++       +   +N +  GL K G +D A+ 
Sbjct: 817 IPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALD 876

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L  D + +    PT   Y   I  + +SG   +  ++   M   GC PN  I + +I+G 
Sbjct: 877 LYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGF 936

Query: 564 CKHGTLEEARKVFTNL 579
            K G  + A  +F  +
Sbjct: 937 GKAGEADAACALFKRM 952



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 183/393 (46%), Gaps = 22/393 (5%)

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           M+  L  +  L+    V++ M+K +++ D   Y+T+   L   G + +     R+M+E G
Sbjct: 124 MLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFG 183

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
            +++   Y  LI  L+      +A ++ + ++  G+R  L  Y+S++ GL + +  D   
Sbjct: 184 FVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVM 243

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-------LKFSVAADLE 381
            L +      L P+  T    +      G+++  +++L +M+        + ++V  D  
Sbjct: 244 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLID-- 301

Query: 382 KFFEFLVGKEERIMMALDVFEELK-GKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
                 +    ++  A +VFE++K G+       Y  L+    +  ++      + +M  
Sbjct: 302 -----ALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEK 356

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
                + ++F+I +    ++G+  EA +  + + +   +P++  YN L  GL ++  +D 
Sbjct: 357 DGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDD 416

Query: 501 AMMLVRDCLGNVAS---GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           A+ L     GN+ S    PT + Y + I +  +SG++   +E   +M  +G  PN V C+
Sbjct: 417 ALEL----FGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACN 472

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           A +  + K G   EA+++F  L++  L+ ++ T
Sbjct: 473 ASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVT 505



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 178/432 (41%), Gaps = 45/432 (10%)

Query: 159  AYCLSRNNLFRAADQVPEL--------MDSQGRIAEMLEILEKMRRN-LCKPDVFAYTAM 209
            AY +  N L+  ADQ   L        + ++  I   +   E++  N +C+        +
Sbjct: 696  AYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPI 755

Query: 210  IRVLAAERNLDACLRVWEEMKKDL-VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
            IR      N+     ++E+  KDL V+  +  Y  LI GL +   +    ++F ++K  G
Sbjct: 756  IRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTG 815

Query: 269  ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
             + D A Y  L++     GK+ +  +L K++      A+   +N +I GL +    D A 
Sbjct: 816  CIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDAL 875

Query: 329  KLFEVTVQD-DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
             L+   + D D +P   T  PL+   ++ GR+                   + ++ FE +
Sbjct: 876  DLYYDLMSDRDFSPTACTYGPLIDGLSKSGRL------------------YEAKQLFEGM 917

Query: 388  VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS 447
            +    R                 +  IYNIL+    + GE   A  LF +M    +  + 
Sbjct: 918  LDYGCR----------------PNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDL 961

Query: 448  LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
             ++S+ + C    G + E      ++ E    P V  YN +  GL K   ++ A++L  +
Sbjct: 962  KTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNE 1021

Query: 508  CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
               +    P  + Y   IL++  +G  E+  ++ NE+ + G  PN    +A+I G    G
Sbjct: 1022 MKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSG 1081

Query: 568  TLEEARKVFTNL 579
              E A  V+  +
Sbjct: 1082 KPEHAYAVYQTM 1093



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 186/449 (41%), Gaps = 27/449 (6%)

Query: 145  QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            QKG   N  ++N L  CL +N+                 +   L++L KM    C PDVF
Sbjct: 601  QKGCPPNTITFNTLFDCLCKND----------------EVTLALKMLFKMMDMGCVPDVF 644

Query: 205  AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
             Y  +I  L     +   +  + +MKK LV  D +   TL+ G+ K   +   +++    
Sbjct: 645  TYNTIIFGLVKNGQVKEAMCFFHQMKK-LVYPDFVTLCTLLPGVVKASLIEDAYKIITNF 703

Query: 265  KENGILIDRA---IYGVLIEGLVGEGKVGKACDLLKDLVDSGY-RADLGIYNSIIGGLCR 320
              N    D+     +  LI  ++ E  +  A    + LV +G  R    I   II   C+
Sbjct: 704  LYN--CADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCK 761

Query: 321  VKQFDKAYKLFEVTVQD-DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
                  A  LFE   +D  + P   T N L+    E   ++    +  Q++         
Sbjct: 762  HNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVA 821

Query: 380  LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGK- 437
               F     GK  +I    ++++E+      +  I +NI++  L++ G V  AL L+   
Sbjct: 822  TYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDL 881

Query: 438  MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
            M   +    + ++   I    +SG + EA +    +++    P+ A YN L  G  K GE
Sbjct: 882  MSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGE 941

Query: 498  IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
             DAA  L +  +      P    Y++ +  +C  G  ++ +    E+ + G  P+ V  +
Sbjct: 942  ADAACALFKRMVKE-GVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYN 1000

Query: 558  AIISGMCKHGTLEEARKVFTNLRERKLLT 586
             II+G+ K   LEEA  +F  ++  + +T
Sbjct: 1001 LIINGLGKSHRLEEALVLFNEMKTSRGIT 1029



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 156/379 (41%), Gaps = 57/379 (15%)

Query: 129  ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV----------PE-- 176
             NN + A   F    K  G +    +YN L   L   ++   A  V          P+  
Sbjct: 762  HNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVA 821

Query: 177  ----LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
                L+D+    G+I E+ E+ ++M  + C+ +   +  +I  L    N+D  L ++ ++
Sbjct: 822  TYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDL 881

Query: 230  KKDL-VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
              D         Y  LI GL K GR+    +LF  M + G   + AIY +LI G    G+
Sbjct: 882  MSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGE 941

Query: 289  VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
               AC L K +V  G R DL  Y+ ++  LC V + D+    F+   +  L PD      
Sbjct: 942  ADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPD------ 995

Query: 349  LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELK-GK 407
             +VC          + L+                     +GK  R+  AL +F E+K  +
Sbjct: 996  -VVC----------YNLIING------------------LGKSHRLEEALVLFNEMKTSR 1026

Query: 408  GYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
            G +  +  YN L+  L   G V++A  ++ +++   LE N  +F+  I+ +  SG    A
Sbjct: 1027 GITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHA 1086

Query: 467  CECHNKIIEMSQVPSVAAY 485
               +  ++     P+   Y
Sbjct: 1087 YAVYQTMVTGGFSPNTGTY 1105



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 182  GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMA 240
            GR+ E L   ++++ +   PDV  Y  +I  L     L+  L ++ EMK    +  D+  
Sbjct: 975  GRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYT 1034

Query: 241  YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
            Y +LI+ L   G V    +++ E++  G+  +   +  LI G    GK   A  + + +V
Sbjct: 1035 YNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMV 1094

Query: 301  DSGYRADLGIYNSI 314
              G+  + G Y  +
Sbjct: 1095 TGGFSPNTGTYEQL 1108


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 140/634 (22%), Positives = 247/634 (38%), Gaps = 121/634 (19%)

Query: 89  ARFITDAFRKNQFQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKG 147
           AR I DA       +G +    L + R +++  LV EVL++   P+    FF WAG+Q G
Sbjct: 101 ARAIADAVSGVDDVFGRKSQKFLRQFREKLSESLVIEVLRLIARPSAVISFFVWAGRQIG 160

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-----------------------GRI 184
           YKH    YNAL   + R++     ++VPE    Q                       G  
Sbjct: 161 YKHTAPVYNALVDLIVRDD----DEKVPEEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSF 216

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK-------------- 230
           +  LE L +++    +P    Y  +I+       LD+   +  EM               
Sbjct: 217 SIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCF 276

Query: 231 -------------KDLVEA-----DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
                          LVE      D + Y  LI GLC+        +    M+    L +
Sbjct: 277 AYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPN 336

Query: 273 RAIYGVLIEGLVGEGKVGK-----------------------------------ACDLLK 297
              Y  L+ G + + ++G+                                   A  LLK
Sbjct: 337 VVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLK 396

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQ------FDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
            +V  G+     +YN +IG +C  K        D A K +   +   +  +   V+    
Sbjct: 397 KMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTR 456

Query: 352 CCAEMGRMDNFFKLLAQMEKLKF-SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY- 409
           C    G+ +  F ++ +M    F    +   K   +L     ++ +A  +FEE+K  G  
Sbjct: 457 CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNA-SKMELAFLLFEEMKRGGLV 515

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
           + V  Y I++ +  + G +++A   F +MR +    N ++++  I  ++++  +  A E 
Sbjct: 516 ADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANEL 575

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG---------------NVAS 514
              ++    +P++  Y+ L  G CK G+++ A  +     G               + + 
Sbjct: 576 FETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSE 635

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P    Y   +   C+S   E+  ++L+ M+ EGC PN+++  A+I G+CK G L+EA++
Sbjct: 636 RPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 695

Query: 575 VFTNLRERKLLTEANTIVYDEILIEHMKKKTADL 608
           V T + E      A    Y  ++  + K K  DL
Sbjct: 696 VKTEMSEHGF--PATLYTYSSLIDRYFKVKRQDL 727



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 176/410 (42%), Gaps = 35/410 (8%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G+  +   ++ +M      PD   Y+ ++  L     ++    ++EEMK+  + ADV 
Sbjct: 460 SAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVY 519

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  ++   CK G + +  + F EM+E G   +   Y  LI   +   KV  A +L + +
Sbjct: 520 TYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETM 579

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G   ++  Y+++I G C+  Q +KA ++FE        PD                +
Sbjct: 580 LSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD----------------V 623

Query: 360 DNFFKLLAQMEKLK--FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YN 416
           D +FK      +     +  A L+ F      K  R+  A  + + +  +G     I Y+
Sbjct: 624 DMYFKQYDDNSERPNVVTYGALLDGF-----CKSHRVEEARKLLDAMSMEGCEPNQIVYD 678

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  L ++G++ +A  +  +M          ++S  I  + +      A +  +K++E 
Sbjct: 679 ALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLEN 738

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           S  P+V  Y  +  GLCK+G+ D A     MM  + C  NV +      Y   I      
Sbjct: 739 SCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT------YTAMIDGFGMI 792

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           G+ E  +E+L  M  +G  PN V    +I   CK+G L+ A  +   +++
Sbjct: 793 GKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQ 842



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 110/474 (23%), Positives = 195/474 (41%), Gaps = 69/474 (14%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E ++ L +MR   C P+V  Y+ ++     ++ L  C RV   M  +        + +L+
Sbjct: 320 EAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLV 379

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              C  G     ++L ++M + G +    +Y +LI  + G+ K    CDLL DL +  Y 
Sbjct: 380 HAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGD-KDSLNCDLL-DLAEKAYS 437

Query: 306 ADLGI--------YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
             L           +S    LC   +++KA+ +    +     PD ST + +L       
Sbjct: 438 EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNAS 497

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPI 414
           +M+  F L  +M++    + AD+  +   +    K   I  A   F E++  G + +V  
Sbjct: 498 KMELAFLLFEEMKR--GGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVT 555

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE-----C 469
           Y  L+ A L+  +V  A  LF  M       N +++S  I  H ++G + +AC+     C
Sbjct: 556 YTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMC 615

Query: 470 HNKII-----------EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE 518
            +K +           + S+ P+V  Y  L  G CK   ++ A  L+ D +      P +
Sbjct: 616 GSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLL-DAMSMEGCEPNQ 674

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEG------------------------------ 548
             Y   I  +C+ G+ ++  EV  EM++ G                              
Sbjct: 675 IVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSK 734

Query: 549 -----CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
                C PN VI + +I G+CK G  +EA K+   + E+    + N + Y  ++
Sbjct: 735 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG--CQPNVVTYTAMI 786



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 84/425 (19%), Positives = 178/425 (41%), Gaps = 41/425 (9%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           N  +Y+AL     +      A Q+ E M     + ++    ++   N  +P+V  Y A++
Sbjct: 587 NIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALL 646

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
                   ++   ++ + M  +  E + + Y  LI GLCK G++    E+  EM E+G  
Sbjct: 647 DGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFP 706

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
                Y  LI+      +   A  +L  ++++    ++ IY  +I GLC+V + D+AYKL
Sbjct: 707 ATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKL 766

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK 390
            ++  +    P+  T   ++         D F                          G 
Sbjct: 767 MQMMEEKGCQPNVVTYTAMI---------DGF--------------------------GM 791

Query: 391 EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
             +I   L++ E +  KG + +   Y +L+    + G +  A  L  +M+  +   ++  
Sbjct: 792 IGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAG 851

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           +   I+    + + +E+    ++I +    P ++ Y  L   L K   ++ A+ L+ + +
Sbjct: 852 YRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEE-V 908

Query: 510 GNVASGPTEFK--YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
              ++   ++   Y   I  +C + + E   ++ +EMT++G  P      ++I G+ ++ 
Sbjct: 909 ATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNS 968

Query: 568 TLEEA 572
            + EA
Sbjct: 969 KISEA 973



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 29/174 (16%)

Query: 126 LKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIA 185
           L V +N     K  HW     GY+     +N                   E ++S G   
Sbjct: 830 LDVAHNLLEEMKQTHWPTHTAGYRKVIEGFN------------------KEFIESLG--- 868

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM---KKDLVEADVMAYV 242
               +L+++ ++   P +  Y  +I  L   + L+  LR+ EE+      LV+     Y 
Sbjct: 869 ----LLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSS-TYN 923

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           +LI  LC   +V    +LF EM + G++ +   +  LI+GL    K+ +A  LL
Sbjct: 924 SLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLL 977


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 201/438 (45%), Gaps = 11/438 (2%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           + E MR+ +  PDV+ ++  I        ++  ++++ +M+K  V  +V+ Y  LI GLC
Sbjct: 301 VFETMRQGV-SPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLC 359

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K G +        +M ++G+      Y VLI GL+   K  +A  +LK+ ++ G+  +  
Sbjct: 360 KHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEV 419

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
           +YN++I G C++     A ++    V   + P+  T+N ++    ++G+M+    +L +M
Sbjct: 420 VYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEM 479

Query: 370 EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEV 428
               FS+           +    R   AL    E+  +    +  +   L+G L + G+ 
Sbjct: 480 LSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKH 539

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
             A+ L+ ++       N ++ +  I    ++G++ EA     K++E   V     YN L
Sbjct: 540 SDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTL 599

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
             G CK G+++    L R  +      P  F Y L I  +CR G+ ++ + + NE     
Sbjct: 600 ISGCCKEGKVEEGFKL-RGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRD 658

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADL 608
             PN      +I G CK   +EE  K+FT L  + L  E N++VY+ ++  + +      
Sbjct: 659 LVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNL--ELNSVVYNTLIRAYCRNGNT-- 714

Query: 609 VLSGLKFFGLESKLKAKG 626
               ++ F L   +++KG
Sbjct: 715 ----VEAFKLHDDMRSKG 728



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/471 (23%), Positives = 211/471 (44%), Gaps = 43/471 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ + +++   M +    P+V  Y  +I  L    NLD   R  E+M KD V A ++ Y
Sbjct: 327 GKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITY 386

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GL K  +    + + +E  E G   +  +Y  LI+G    G +G A  +  D+V 
Sbjct: 387 SVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVS 446

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   +    NSII G C++ Q ++A  + E  +    + +      ++       R ++
Sbjct: 447 KGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFES 506

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGY-SSVPIYNI 417
             + L +M  L  ++  + +     LVG   KE +   A++++  L  KG+ +++   N 
Sbjct: 507 ALRFLREM--LLRNMRPN-DGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNA 563

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L + G +++A+ L  KM      ++ ++++  I    + G + E  +   ++++  
Sbjct: 564 LIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQG 623

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMML-----VRDCLGNVAS----------------GP 516
             P    YN L  G+C+IG++D A+ L      RD + NV +                G 
Sbjct: 624 IEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGE 683

Query: 517 TEFKYALT-------------ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
             F   LT             I   CR+G   +  ++ ++M  +G PP     S++I GM
Sbjct: 684 KLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGM 743

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK 614
           C  G +E+A+ +   +R+  LL   N + Y  ++  + K    D V++ L+
Sbjct: 744 CNIGRMEDAKCLIDEMRKEGLL--PNVVCYTALIGGYCKLGQMDKVVNVLQ 792



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/455 (23%), Positives = 205/455 (45%), Gaps = 28/455 (6%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           +KG+  N   YN L   YC                    G + + L I   M      P+
Sbjct: 411 EKGFTPNEVVYNTLIDGYC------------------KMGNLGDALRIRGDMVSKGINPN 452

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
                ++I+       ++    + EEM       +  A+ T+I  LC   R        R
Sbjct: 453 SVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLR 512

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EM    +  +  +   L+ GL  EGK   A +L   L++ G+ A+L   N++I GLC+  
Sbjct: 513 EMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTG 572

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
              +A +L +  ++     D  T N L+  C + G+++  FKL  +M  +K  +  D   
Sbjct: 573 NMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEM--VKQGIEPDTFT 630

Query: 383 FFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMR 439
           +   + G  +  ++  A++++ E K +    +V  Y +++    +  ++++   LF ++ 
Sbjct: 631 YNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELL 690

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
             NLE+NS+ ++  I+ +  +G+ +EA + H+ +      P+ A Y+ L  G+C IG ++
Sbjct: 691 TQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRME 750

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A  L+ D +      P    Y   I   C+ G+ +K++ VL EM+     PN++  + +
Sbjct: 751 DAKCLI-DEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVM 809

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           I G  K G ++ A K+   +  + ++   +T+ Y+
Sbjct: 810 IDGYSKSGDMKTAAKLLHEMVGKGIV--PDTVTYN 842



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 172/406 (42%), Gaps = 60/406 (14%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            +G+  N  ++  + + L  N+ F +A                L  L +M     +P+  
Sbjct: 481 SRGFSINPGAFTTIIHWLCMNSRFESA----------------LRFLREMLLRNMRPNDG 524

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
             T ++  L  E      + +W  + +    A+++    LI GLCK G +     L ++M
Sbjct: 525 LLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKM 584

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            E G ++D+  Y  LI G   EGKV +   L  ++V  G   D   YN +I G+CR+ + 
Sbjct: 585 LERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKL 644

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN----FFKLLAQMEKLKFSVAADL 380
           D+A  L+      DL P+  T   ++    +  +++     F +LL Q  +L   V   L
Sbjct: 645 DEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTL 704

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKG-------YSS---------------------- 411
            + +     +    + A  + ++++ KG       YSS                      
Sbjct: 705 IRAY----CRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMR 760

Query: 412 -------VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
                  V  Y  L+G   ++G++ K + +  +M   ++  N +++++ I  + +SGD+ 
Sbjct: 761 KEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMK 820

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
            A +  ++++    VP    YN LT G CK G+I+   +L  D +G
Sbjct: 821 TAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLLAEDGVG 866



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 135/325 (41%), Gaps = 34/325 (10%)

Query: 145 QKGYKHNFASYNALAYCLSRN-NLFRAADQVPELMD------------------SQGRIA 185
           +KG+  N  + NAL + L +  N+  A   + ++++                   +G++ 
Sbjct: 551 EKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVE 610

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E  ++  +M +   +PD F Y  +I  +     LD  + +W E K   +  +V  Y  +I
Sbjct: 611 EGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMI 670

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G CK  ++  G +LF E+    + ++  +Y  LI      G   +A  L  D+   G  
Sbjct: 671 DGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIP 730

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
                Y+S+I G+C + + + A  L +   ++ L P+      L+    ++G+MD    +
Sbjct: 731 PTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNV 790

Query: 366 LAQME-------KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNI 417
           L +M        K+ ++V  D          K   +  A  +  E+ GKG       YN+
Sbjct: 791 LQEMSSYDIHPNKITYTVMID-------GYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNV 843

Query: 418 LMGALLEIGEVKKALYLFGKMRGLN 442
           L     + G++++   L     G N
Sbjct: 844 LTNGFCKEGKIEEGKLLAEDGVGFN 868


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 146/679 (21%), Positives = 265/679 (39%), Gaps = 123/679 (18%)

Query: 45  ASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWG 104
           A EP + P  + + +    +P     +    P          P A  I+ A R     + 
Sbjct: 39  APEPQRGPRLSSKDFAFLQVPTPVLHAAALPP----------PEAVLISKAIRAYASDFD 88

Query: 105 PQVVTELSKLRRVTPD-LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLS 163
            +    L + R    D +V  VL+    P L  +FF WA +Q GY H  A YNALA  L 
Sbjct: 89  GKAERFLRRHRDFLNDAVVVAVLRSVRTPELCVRFFLWAERQVGYSHTGACYNALAEVLH 148

Query: 164 RNNLFRAADQV------------PELMD-------SQGRIAEMLEILEKMRRNLCKPDVF 204
            ++  R  +++              L++         G  A+ LE L +++    +P   
Sbjct: 149 FDDRARTTERLLREIGEDDREVLGRLLNVIVRKCCRHGAWAKALEELGRLKDFGYRPSGA 208

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR----------- 253
            Y A+++VLA    +D   RV +EM +     D          LCK GR           
Sbjct: 209 TYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEGRWSDALVMIERE 268

Query: 254 -----------VVRG---HELFRE-------MKENGILIDRAIYGVLIEGLVGEGKVGKA 292
                      ++ G     LF E       M+ N  + +   Y  L+ G + + ++G  
Sbjct: 269 DFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWC 328

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-- 350
             ++  +++ G   +  ++NS++   C  + +  AYKL          P +   N  +  
Sbjct: 329 KRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGS 388

Query: 351 VCCAE---------------------------------------MGRMDNFFKLLAQMEK 371
           +C  E                                       MG+ D  F+++  M +
Sbjct: 389 ICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMR 448

Query: 372 LKF-SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVK 429
             F    +   K   FL  +  ++  A  +F+E+K  G    V  Y IL+ +  ++G ++
Sbjct: 449 KGFVPDTSTYSKVITFLC-EAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIE 507

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
           +A   F +M  +    + ++++  +  ++++  + +A +  +++++    P+   Y+ L 
Sbjct: 508 QARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALV 567

Query: 490 KGLCKIGEIDAAMMLVRDCLG---NVAS------------GPTEFKYALTILHVCRSGEA 534
            GLCK GE   A  +    +G   NV S             P    Y   I  +C++ + 
Sbjct: 568 DGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKV 627

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
               E+L+ M+  GC PN +I  A+I G CK G L+ A++VF  + +   L   +T  Y 
Sbjct: 628 VDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHT--YT 685

Query: 595 EILIEHMKKKTADLVLSGL 613
            ++    K +  DL +  L
Sbjct: 686 SLIDAMFKDRRLDLAIKVL 704



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 183/410 (44%), Gaps = 39/410 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  +  +I++ M R    PD   Y+ +I  L     ++    +++EMK   V  DV  Y
Sbjct: 434 GKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTY 493

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI   CK G + +    F EM+  G       Y  L+   +   +V +A D+   +VD
Sbjct: 494 TILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVD 553

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFE--VTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +G   +   Y++++ GLC+  +  KA +++   +   D++  DF                
Sbjct: 554 AGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDF---------------- 597

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
             +F+      +   S+A ++  +   + G  K  +++ A ++ + +   G   +  IY+
Sbjct: 598 --YFE-----GEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYD 650

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+    ++G++  A  +F +M          +++  I    +   +  A +  ++++E 
Sbjct: 651 ALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLES 710

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLV-----RDCLGNVASGPTEFKYALTILHVCRS 531
           S  P+V  Y  +  GLC+IGE   A+ L+     R C  NV +      Y   I  + +S
Sbjct: 711 SCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVT------YTSLIDGLGKS 764

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           G+ +  +++  +M  +GC PN V    +I+  C  G L+EA  + + +++
Sbjct: 765 GKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQ 814



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 159/326 (48%), Gaps = 6/326 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ +  E+L+ M  N C+P+   Y A+I        LD    V+  M K      V  Y 
Sbjct: 626 KVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYT 685

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +LI  + K  R+    ++  +M E+    +   Y  +I+GL   G+  KA  LL  +   
Sbjct: 686 SLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKR 745

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   ++  Y S+I GL +  + D + +LF   +    AP++ T   L+  C   G +D  
Sbjct: 746 GCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEA 805

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSV-PIYNILMGA 421
             LL++M++  +     ++ +   + G  ++ + +L + EEL+  G  S+ P+Y +L+ +
Sbjct: 806 HSLLSEMKQTYW--PKYVQGYCSVVQGFSKKFIASLGLLEELESHGMVSIAPVYGLLIDS 863

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLS---FSIAIQCHVESGDILEACECHNKIIEMSQ 478
             + G ++KAL L  +M  ++  +N  S   ++  IQ    +  + +A E +++I     
Sbjct: 864 FSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLEKAFELYSEITRKGV 923

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMML 504
           VP ++A+ CL KGL K+ + + A+ L
Sbjct: 924 VPELSAFICLIKGLIKVNKWNEALQL 949



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 122/271 (45%), Gaps = 8/271 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+   +++L +M  + C P+V  YTAMI  L         L++   M+K     +V+ Y 
Sbjct: 696 RLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYT 755

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +LI GL K G+V    +LF +M   G   +   Y VLI      G + +A  LL ++  +
Sbjct: 756 SLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQT 815

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
            +   +  Y S++ G    K+F  +  L E      +         L+   ++ GR++  
Sbjct: 816 YWPKYVQGYCSVVQGF--SKKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKA 873

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGK---EERIMMALDVFEELKGKG-YSSVPIYNIL 418
            +L  +M ++  S+    +  +  L+       ++  A +++ E+  KG    +  +  L
Sbjct: 874 LELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICL 933

Query: 419 MGALLEIGEVKKALYLFGKM--RGLNLEVNS 447
           +  L+++ +  +AL L   M   G+N + N+
Sbjct: 934 IKGLIKVNKWNEALQLCYSMCDEGVNWQSNN 964


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 178/401 (44%), Gaps = 37/401 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+G++   L++L ++  + C+P V  YT +I     E  +D  L++ +EM    ++ D+ 
Sbjct: 205 SRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMF 264

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I G+CK G V R  E+ R ++  G   D   Y +L+  L+ +GK  +   L+  +
Sbjct: 265 TYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM 324

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
                  ++  Y+ +I  LCR  + ++A  L ++  +  L PD  + +PL+      GR+
Sbjct: 325 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 384

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNIL 418
           D                                   +A++  E +   G    +  YN +
Sbjct: 385 D-----------------------------------VAIEFLETMISDGCLPDIVNYNTV 409

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L + G+  +AL +FGK+  +    NS S++        SGD + A     +++    
Sbjct: 410 LATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGI 469

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P    YN +   LC+ G +D A  L+ D + +    P+   Y + +L  C++   E  I
Sbjct: 470 DPDEITYNSMISCLCREGMVDEAFELLVD-MRSCEFHPSVVTYNIVLLGFCKAHRIEDAI 528

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            VL  M   GC PNE   + +I G+   G   EA ++  +L
Sbjct: 529 NVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL 569



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 183/416 (43%), Gaps = 41/416 (9%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           +   ++EILEK      +PDVFAY A+I        +D   RV + M+      D + Y 
Sbjct: 142 KAVRVMEILEK----FGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYN 197

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            +I  LC  G++    ++  ++  +        Y +LIE  + EG V +A  L+ +++  
Sbjct: 198 IMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSR 257

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + D+  YN+II G+C+    D+A+++          PD  + N LL      G+ +  
Sbjct: 258 GLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEG 317

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422
            KL+ +M    FS   D                               +V  Y+IL+  L
Sbjct: 318 EKLMTKM----FSEKCD------------------------------PNVVTYSILITTL 343

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
              G++++A+ L   M+   L  ++ S+   I      G +  A E    +I    +P +
Sbjct: 344 CRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDI 403

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             YN +   LCK G+ D A+ +    LG V   P    Y      +  SG+  + + ++ 
Sbjct: 404 VNYNTVLATLCKNGKADQALEIFGK-LGEVGCSPNSSSYNTMFSALWSSGDKIRALHMIL 462

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           EM   G  P+E+  +++IS +C+ G ++EA ++  ++R  +     + + Y+ +L+
Sbjct: 463 EMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEF--HPSVVTYNIVLL 516



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 148/334 (44%), Gaps = 3/334 (0%)

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C+ G  +    L   M   G   D  +   LI+G      + KA  +++ L   G + D+
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDV 158

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             YN++I G C++ + D A ++ +     D +PD  T N ++      G++D   K+L Q
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGE 427
           +                     E  +  AL + +E+  +G    +  YN ++  + + G 
Sbjct: 219 LLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGM 278

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           V +A  +   +     E + +S++I ++  +  G   E  +   K+      P+V  Y+ 
Sbjct: 279 VDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSI 338

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L   LC+ G+I+ AM L++  +      P  + Y   I   CR G  +  IE L  M  +
Sbjct: 339 LITTLCRDGKIEEAMNLLK-LMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 397

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           GC P+ V  + +++ +CK+G  ++A ++F  L E
Sbjct: 398 GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGE 431



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 138/306 (45%), Gaps = 7/306 (2%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           M  +G +    E++  +    C+PDV +Y  ++R L  +   +   ++  +M  +  + +
Sbjct: 273 MCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 332

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ Y  LI  LC+ G++     L + MKE G+  D   Y  LI     EG++  A + L+
Sbjct: 333 VVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLE 392

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            ++  G   D+  YN+++  LC+  + D+A ++F    +   +P+ S+ N +       G
Sbjct: 393 TMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSG 452

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL----KGKGYSSVP 413
             D    L   +E +   +  D E  +  ++    R  M  + FE L      + + SV 
Sbjct: 453 --DKIRALHMILEMMSNGIDPD-EITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVV 509

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YNI++    +   ++ A+ +   M G     N  ++++ I+    +G   EA E  N +
Sbjct: 510 TYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL 569

Query: 474 IEMSQV 479
           + +  +
Sbjct: 570 VRIDAI 575



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 19/220 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS-------------------QGRI 184
           K+KG   +  SY+ L     R      A +  E M S                    G+ 
Sbjct: 360 KEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKA 419

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            + LEI  K+    C P+  +Y  M   L +  +    L +  EM  + ++ D + Y ++
Sbjct: 420 DQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSM 479

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC+ G V    EL  +M+          Y +++ G     ++  A ++L+ +V +G 
Sbjct: 480 ISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGC 539

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
           R +   Y  +I G+       +A +L    V+ D   ++S
Sbjct: 540 RPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEYS 579


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 138/613 (22%), Positives = 249/613 (40%), Gaps = 116/613 (18%)

Query: 114 LRR----VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFR 169
           LRR    +T  +V  VL    +P L  +FF WA +Q GYKH  A Y+ALA  L   +  R
Sbjct: 92  LRRYREFLTDSVVVAVLGAVRSPELCVRFFLWAERQVGYKHTGACYDALAEVLGFEDPAR 151

Query: 170 AA------------DQVPELMDS-------QGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
            A            D +  L++        QG   E LE L +++    +P    Y A++
Sbjct: 152 TAERLLREIGEDDRDVLGRLLNVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALV 211

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR----------------- 253
           +VLA+   ++   RV +EM       D     +    LCK GR                 
Sbjct: 212 QVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKEGRWGDALDLLEREDFKLDT 271

Query: 254 -----VVRG---HELFRE-------MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
                ++ G     LF E       M+ N  + +   Y  L+ G + + ++G    ++  
Sbjct: 272 VLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINM 331

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV------------ 346
           ++  G      ++NS++   C  + +  AYKLF         P +               
Sbjct: 332 MMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREE 391

Query: 347 --NPLLV---------------------------CCAEMGRMDNFFKLLAQMEKLKF-SV 376
             NP L+                           C   +G+ +  F+++ +M +  F   
Sbjct: 392 LPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPD 451

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
           A+   K   FL  + +R+  A  +F+E+K  G +  V  Y IL+ +  + G +++A   F
Sbjct: 452 ASTYTKVITFLC-QAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWF 510

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +MR      N ++++  +  +++S  + +A +  ++++  +  P+   Y+ L  GLCK 
Sbjct: 511 DEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKA 570

Query: 496 GEIDAAMMLVRDCLG---NVAS------------GPTEFKYALTILHVCRSGEAEKIIEV 540
           GEI  A  +    +G   N+ S             P    Y   +  +C++ +     ++
Sbjct: 571 GEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDL 630

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           L+ M   GC PN+++  A++ G CK G ++ A++VF  + +   L   +T  Y  ++   
Sbjct: 631 LDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHT--YTSLIDRM 688

Query: 601 MKKKTADLVLSGL 613
            K    DL +  L
Sbjct: 689 FKDGRLDLAMKVL 701



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 116/521 (22%), Positives = 217/521 (41%), Gaps = 51/521 (9%)

Query: 91  FITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKH 150
            +T   +K Q  W           +R+   ++ E      +P+L +   H     + Y +
Sbjct: 312 LLTGFLKKKQLGW----------CKRIINMMMTE--GCNPSPSLFNSLVHTYCNAEDYAY 359

Query: 151 NFASYNALAYC-----LSRNNLF------RAADQVPELMDSQGRIAEMLEILEKMRRNLC 199
            +  +N +  C         N+F      R     PEL+D    +AE  ++ E+M    C
Sbjct: 360 AYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLD----LAE--KVYEEMLVASC 413

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
             +        R L      +   ++ +EM +     D   Y  +I  LC+  RV +   
Sbjct: 414 VLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFL 473

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           LF+EMK+ G+  D   Y +LI+     G + +A     ++  +G   ++  Y +++    
Sbjct: 474 LFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYL 533

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           + KQ  +A  +F   V D   P+  T + L+    + G +    ++ A++     ++ +D
Sbjct: 534 KSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESD 593

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
              +FE   GK+   +               +V  Y  L+  L +  +V  A  L   M 
Sbjct: 594 F--YFE---GKDTDTIS-------------PNVVTYGALVNGLCKAQKVSDAHDLLDAML 635

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
               E N + +   +    + G+I  A E   ++ +   +PSV  Y  L   + K G +D
Sbjct: 636 AAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLD 695

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            AM ++   L + +  P    Y   +  +C++GE EK + +L+ M ++GC PN V  +A+
Sbjct: 696 LAMKVLSQMLKD-SCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTAL 754

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           I G+ K G ++   ++F  ++ +      N + Y  ILI H
Sbjct: 755 IDGLGKAGKVDAGLELFMQMKTKG--CAPNYVTY-RILINH 792



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/441 (23%), Positives = 195/441 (44%), Gaps = 30/441 (6%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L+DS    G I +     ++MR   C P+V  YTA++      + L     ++  M  D 
Sbjct: 493 LIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDA 552

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREM----------------KENGILIDRAIYG 277
              + + Y  LI GLCK G + +  E++ ++                  + I  +   YG
Sbjct: 553 CYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYG 612

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
            L+ GL    KV  A DLL  ++ +G   +  +Y++++ G C+V + D A ++F    + 
Sbjct: 613 ALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKC 672

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIM 395
              P   T   L+    + GR+D   K+L+QM  LK S   ++  +   + G  K     
Sbjct: 673 GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQM--LKDSCNPNVVTYTAMVDGLCKTGETE 730

Query: 396 MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
            AL++   ++ KG S +V  Y  L+  L + G+V   L LF +M+      N +++ I I
Sbjct: 731 KALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILI 790

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
                +G + +A    +++ +      +  Y    +G  K     A++ L+ + + +  +
Sbjct: 791 NHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSK--RFLASLGLLEE-MESHDT 847

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV---ICSAIISGMCKHGTLEE 571
            P    Y + I    ++G  E  +E+  EM +     N     + +++I  +C    +EE
Sbjct: 848 APIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEE 907

Query: 572 ARKVFTNLRERKLLTEANTIV 592
           A  +++ +R R ++ + +  V
Sbjct: 908 AVALYSEMRRRGIVPDLSAFV 928



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 101/450 (22%), Positives = 194/450 (43%), Gaps = 40/450 (8%)

Query: 77  KTFQLQRHLSPIARFITDAFRKNQFQWGPQV-----VTELSKLRRVTPDLVAEVLKVENN 131
           K+ QL +      R + DA   N   +   +       E+ K   V   L+     +E++
Sbjct: 534 KSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESD 593

Query: 132 PTLASKFFHWAGKQKG-YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEI 190
                  F++ GK       N  +Y AL      N L +A            ++++  ++
Sbjct: 594 -------FYFEGKDTDTISPNVVTYGALV-----NGLCKAQ-----------KVSDAHDL 630

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
           L+ M    C+P+   Y A++        +D+   V+  M K      V  Y +LI  + K
Sbjct: 631 LDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFK 690

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
            GR+    ++  +M ++    +   Y  +++GL   G+  KA +LL  +   G   ++  
Sbjct: 691 DGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVT 750

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           Y ++I GL +  + D   +LF        AP++ T   L+  C   G +D+   LL +M+
Sbjct: 751 YTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMK 810

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSV-PIYNILMGALLEIGEVK 429
           +  +     L+ +   + G  +R + +L + EE++    + + P+Y +L+ +  + G ++
Sbjct: 811 QTHWP--KYLQGYRTTVQGFSKRFLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLE 868

Query: 430 KALYLFGKM----RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
            AL L  +M      LN+    +  S+ IQ    S  + EA   ++++     VP ++A+
Sbjct: 869 TALELHKEMMEVSSSLNMASKDMHTSL-IQALCLSSQVEEAVALYSEMRRRGIVPDLSAF 927

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
            CL KGL +  + + A+ L   C G    G
Sbjct: 928 VCLVKGLIERNKWNEALQL---CYGICQEG 954



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 127/275 (46%), Gaps = 8/275 (2%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           M   GR+   +++L +M ++ C P+V  YTAM+  L      +  L +   M+K     +
Sbjct: 688 MFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPN 747

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ Y  LI GL K G+V  G ELF +MK  G   +   Y +LI      G +  A  LL 
Sbjct: 748 VVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLD 807

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           ++  + +   L  Y + + G    K+F  +  L E     D AP       L+   ++ G
Sbjct: 808 EMKQTHWPKYLQGYRTTVQGF--SKRFLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAG 865

Query: 358 RMDNFFKLLAQMEKLKFSV---AADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVP 413
           R++   +L  +M ++  S+   + D+       +    ++  A+ ++ E++ +G    + 
Sbjct: 866 RLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEAVALYSEMRRRGIVPDLS 925

Query: 414 IYNILMGALLEIGEVKKALYL-FGKMR-GLNLEVN 446
            +  L+  L+E  +  +AL L +G  + G+N E N
Sbjct: 926 AFVCLVKGLIERNKWNEALQLCYGICQEGVNWEGN 960


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 140/634 (22%), Positives = 247/634 (38%), Gaps = 121/634 (19%)

Query: 89  ARFITDAFRKNQFQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKG 147
           AR I DA       +G +    L + R +++  LV EVL++   P+    FF WAG+Q G
Sbjct: 60  ARAIADAVTGVDDVFGRKSQKFLRQFREKLSESLVIEVLRLIARPSAVISFFVWAGRQIG 119

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-----------------------GRI 184
           YKH    YNAL   + R++     ++VPE    Q                       G  
Sbjct: 120 YKHTAPVYNALVDLIVRDD----DEKVPEEFLQQIRDDDKEVFGQFLNVLVRKHCRNGSF 175

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK-------------- 230
           +  LE L +++    +P    Y  +I+       LD+   +  EM               
Sbjct: 176 SIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCF 235

Query: 231 -------------KDLVEA-----DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
                          LVE      D + Y  LI GLC+        +    M+    L +
Sbjct: 236 AYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPN 295

Query: 273 RAIYGVLIEGLVGEGKVGK-----------------------------------ACDLLK 297
              Y  L+ G + + ++G+                                   A  LLK
Sbjct: 296 VVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLK 355

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQ------FDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
            +V  G+     +YN +IG +C  K        D A K +   +   +  +   V+    
Sbjct: 356 KMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTR 415

Query: 352 CCAEMGRMDNFFKLLAQMEKLKF-SVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-Y 409
           C    G+ +  F ++ +M    F    +   K   +L     ++ +A  +FEE+K  G  
Sbjct: 416 CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNA-SKMELAFLLFEEMKRGGLV 474

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
           + V  Y I++ +  + G +++A   F +MR +    N ++++  I  ++++  +  A E 
Sbjct: 475 ADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANEL 534

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG---------------NVAS 514
              ++    +P++  Y+ L  G CK G+++ A  +     G               + + 
Sbjct: 535 FETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSE 594

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P    Y   +   C+S   E+  ++L+ M+ EGC PN+++  A+I G+CK G L+EA++
Sbjct: 595 RPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 654

Query: 575 VFTNLRERKLLTEANTIVYDEILIEHMKKKTADL 608
           V T + E      A    Y  ++  + K K  DL
Sbjct: 655 VKTEMSEHGF--PATLYTYSSLIDRYFKVKRQDL 686



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 176/410 (42%), Gaps = 35/410 (8%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G+  +   ++ +M      PD   Y+ ++  L     ++    ++EEMK+  + ADV 
Sbjct: 419 SAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVY 478

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  ++   CK G + +  + F EM+E G   +   Y  LI   +   KV  A +L + +
Sbjct: 479 TYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETM 538

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G   ++  Y+++I G C+  Q +KA ++FE        PD                +
Sbjct: 539 LSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD----------------V 582

Query: 360 DNFFKLLAQMEKLK--FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YN 416
           D +FK      +     +  A L+ F      K  R+  A  + + +  +G     I Y+
Sbjct: 583 DMYFKQYDDNSERPNVVTYGALLDGF-----CKSHRVEEARKLLDAMSMEGCEPNQIVYD 637

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  L ++G++ +A  +  +M          ++S  I  + +      A +  +K++E 
Sbjct: 638 ALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLEN 697

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           S  P+V  Y  +  GLCK+G+ D A     MM  + C  NV +      Y   I      
Sbjct: 698 SCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT------YTAMIDGFGMI 751

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           G+ E  +E+L  M  +G  PN V    +I   CK+G L+ A  +   +++
Sbjct: 752 GKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQ 801



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 109/474 (22%), Positives = 194/474 (40%), Gaps = 69/474 (14%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E ++ L +MR   C P+V  Y+ ++     ++ L  C RV   M  +        + +L+
Sbjct: 279 EAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLV 338

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              C  G     ++L ++M + G +    +Y +LI  + G+ K     DLL DL +  Y 
Sbjct: 339 HAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGD-KDSLNFDLL-DLAEKAYS 396

Query: 306 ADLGI--------YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
             L           +S    LC   +++KA+ +    +     PD ST + +L       
Sbjct: 397 EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNAS 456

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPI 414
           +M+  F L  +M++    + AD+  +   +    K   I  A   F E++  G + +V  
Sbjct: 457 KMELAFLLFEEMKR--GGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVT 514

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE-----C 469
           Y  L+ A L+  +V  A  LF  M       N +++S  I  H ++G + +AC+     C
Sbjct: 515 YTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMC 574

Query: 470 HNKII-----------EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE 518
            +K +           + S+ P+V  Y  L  G CK   ++ A  L+ D +      P +
Sbjct: 575 GSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLL-DAMSMEGCEPNQ 633

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEG------------------------------ 548
             Y   I  +C+ G+ ++  EV  EM++ G                              
Sbjct: 634 IVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSK 693

Query: 549 -----CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
                C PN VI + +I G+CK G  +EA K+   + E+    + N + Y  ++
Sbjct: 694 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG--CQPNVVTYTAMI 745



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 84/425 (19%), Positives = 178/425 (41%), Gaps = 41/425 (9%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           N  +Y+AL     +      A Q+ E M     + ++    ++   N  +P+V  Y A++
Sbjct: 546 NIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALL 605

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
                   ++   ++ + M  +  E + + Y  LI GLCK G++    E+  EM E+G  
Sbjct: 606 DGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFP 665

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
                Y  LI+      +   A  +L  ++++    ++ IY  +I GLC+V + D+AYKL
Sbjct: 666 ATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKL 725

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK 390
            ++  +    P+  T   ++         D F                          G 
Sbjct: 726 MQMMEEKGCQPNVVTYTAMI---------DGF--------------------------GM 750

Query: 391 EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
             +I   L++ E +  KG + +   Y +L+    + G +  A  L  +M+  +   ++  
Sbjct: 751 IGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAG 810

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           +   I+    + + +E+    ++I +    P ++ Y  L   L K   ++ A+ L+ + +
Sbjct: 811 YRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEE-V 867

Query: 510 GNVASGPTEFK--YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
              ++   ++   Y   I  +C + + E   ++ +EMT++G  P      ++I G+ ++ 
Sbjct: 868 ATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNS 927

Query: 568 TLEEA 572
            + EA
Sbjct: 928 KISEA 932



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 29/174 (16%)

Query: 126 LKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIA 185
           L V +N     K  HW     GY+     +N                   E ++S G   
Sbjct: 789 LDVAHNLLEEMKQTHWPTHTAGYRKVIEGFN------------------KEFIESLG--- 827

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM---KKDLVEADVMAYV 242
               +L+++ ++   P +  Y  +I  L   + L+  LR+ EE+      LV+     Y 
Sbjct: 828 ----LLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSS-TYN 882

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           +LI  LC   +V    +LF EM + G++ +   +  LI+GL    K+ +A  LL
Sbjct: 883 SLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLL 936


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 124/509 (24%), Positives = 218/509 (42%), Gaps = 37/509 (7%)

Query: 75  DPKTFQLQRHLSPIARFITDAFRKNQ-FQWGPQVVTELSKLRRVTPDLVAEVLKVENNPT 133
           DP    L RHL       +  F  +  F     VV  LS+L  V   L            
Sbjct: 108 DPTGASLFRHLHDTFHLCSSPFSSSAVFDL---VVKSLSRLGFVPKALT----------- 153

Query: 134 LASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEK 193
                 H A +  G+     SYNA+   L R    R++    +  D++        +   
Sbjct: 154 ----LLHLANRH-GFAPTVLSYNAVLDALLR----RSSSNHRDYDDAE-------RVFRD 197

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M RN   P+V+ Y  +IR + ++ +L+  L    +M+K+ +  +V+ Y TLI   CK  +
Sbjct: 198 MVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKK 257

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           V     L R M   G+  +   Y  +I GL G+G++ +  +L++++   G   D   YN+
Sbjct: 258 VKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNT 317

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           ++ G C+     +   L    V   L+P+  T   L+ C  + G +    ++  QM    
Sbjct: 318 LVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVR- 376

Query: 374 FSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKK 430
             +  +   +   + G  ++ +M  A  V  E+   G+S SV  YN L+     +G V++
Sbjct: 377 -GLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQE 435

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A+ +   M    L  + +S+S  I       ++ +A +   +++E   +P    Y+ L +
Sbjct: 436 AVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQ 495

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           GLC   ++  A  L R+ +      P E  Y   I   C  GE  K + + +EM Q G  
Sbjct: 496 GLCLQQKLVEAFDLFREMMRR-GLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFL 554

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNL 579
           P+ V  S +I+G+ K    + A+++   L
Sbjct: 555 PDNVTYSVLINGLNKKARTKVAKRLLLKL 583



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 45/230 (19%)

Query: 409 YSSVPIYNILMGALLEIGEVKKALYL---------------------------------- 434
           +SS  ++++++ +L  +G V KAL L                                  
Sbjct: 129 FSSSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDY 188

Query: 435 ------FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
                 F  M    +  N  ++++ I+  V  GD+ +      K+ +    P+V  YN L
Sbjct: 189 DDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTL 248

Query: 489 TKGLCKIGEIDAAMMLVRD-CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
               CK  ++  AM L+R   +G VA+    +   +  L  C  G   ++ E++ EM  +
Sbjct: 249 IDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGL--CGKGRMSEVGELVEEMRGK 306

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           G  P+EV  + +++G CK G L +   + + +  + L    N + Y  ++
Sbjct: 307 GLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGL--SPNVVTYTTLI 354



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 85/241 (35%), Gaps = 50/241 (20%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q ++ E  ++  +M R    PD   YT++I     +  L   LR+ +EM +     D + 
Sbjct: 500 QQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVT 559

Query: 241 YVTLIMGLCKGGR----------------------------------------VVRG--- 257
           Y  LI GL K  R                                        +V+G   
Sbjct: 560 YSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCM 619

Query: 258 -------HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
                    +F+ M +     + AIY ++I G    G V KA +L  +L  S +      
Sbjct: 620 KGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVA 679

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
             +++  L R    D+  +L +  ++     D      L+    + G MD    +L +M 
Sbjct: 680 VIALVKALAREGMNDELSRLLQNILRSCRLNDAKVAKVLVEVNFKEGNMDAVLNVLTEMA 739

Query: 371 K 371
           K
Sbjct: 740 K 740



 Score = 40.0 bits (92), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 1/160 (0%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           +YN L    S NN F++ + + +    +G + E   + + M +   KP+   Y  MI   
Sbjct: 594 TYNTLIENCS-NNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGH 652

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
           +   N+     ++ E++        +A + L+  L + G       L + +  +  L D 
Sbjct: 653 SRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQNILRSCRLNDA 712

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
            +  VL+E    EG +    ++L ++   G   D GI++S
Sbjct: 713 KVAKVLVEVNFKEGNMDAVLNVLTEMAKDGLLPDGGIHSS 752


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 194/435 (44%), Gaps = 24/435 (5%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD++  + +I   +  + +D    V+ +M K  ++ D + + TLI GLCK G+  +  E 
Sbjct: 128 PDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEF 187

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F + + +G       Y  +I GL   G+   A  L K + ++G + ++  YN +I  LC+
Sbjct: 188 FDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCK 247

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK------- 373
            K  ++A  +F       ++PD  T N L+       R      LL +M  L        
Sbjct: 248 DKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFT 307

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
           F+V  D        + KE ++  A  VF+ +   G    V  Y+ LM       E+ +A 
Sbjct: 308 FNVLVD-------AICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEAR 360

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            LF  M     + ++ S++I I+ + ++  I EA +  N++I     P    YN L  GL
Sbjct: 361 KLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGL 420

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           C++G +  A  L ++   N  + P  F Y++ +   C+ G   K   +   M      P+
Sbjct: 421 CQLGRLREAQDLFKNMHSN-GNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPD 479

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSG 612
             + + +I  MCK G L++ARK+F+ L  + LL   N  +Y  I+    K+   D  L  
Sbjct: 480 IAMYNILIDAMCKFGNLKDARKLFSELFVQGLL--PNVQIYTTIINNLCKEGLLDEALEA 537

Query: 613 LKFFGLESKLKAKGC 627
            +       ++  GC
Sbjct: 538 FR------NMEGDGC 546



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 179/403 (44%), Gaps = 12/403 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+     +  KM +   +PD   +  +I  L         +  +++ +    +  V  Y 
Sbjct: 145 RVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYT 204

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           T+I GLCK G       LF++M+E G   +   Y +LI+ L  +  V +A D+   +   
Sbjct: 205 TIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAK 264

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD-- 360
               D+  YNS+I GLC  +++ +A  L       ++ P+  T N L+    + G++   
Sbjct: 265 RISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEA 324

Query: 361 -NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYSSVPI-YN 416
              FK + +M      V  D+  +   + G   R  I+ A  +F+ +  KG       YN
Sbjct: 325 QGVFKTMTEM-----GVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYN 379

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+    +   + +A  LF +M    L  ++++++  I    + G + EA +    +   
Sbjct: 380 ILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSN 439

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
             +P +  Y+ L  G CK G +  A  L R  + +    P    Y + I  +C+ G  + 
Sbjct: 440 GNLPDLFTYSMLLDGFCKEGYLGKAFRLFR-VMQSTYLKPDIAMYNILIDAMCKFGNLKD 498

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             ++ +E+  +G  PN  I + II+ +CK G L+EA + F N+
Sbjct: 499 ARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNM 541



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 175/407 (42%), Gaps = 41/407 (10%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           + +KM    C+P+V  Y  +I  L  ++ ++  L ++  MK   +  D+  Y +LI GLC
Sbjct: 222 LFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLC 281

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
              R      L  EM    I+ +   + VL++ +  EGKV +A  + K + + G   D+ 
Sbjct: 282 NFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVV 341

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            Y+S++ G     +  +A KLF+  +     PD  + N L+    +  R+D   +L  +M
Sbjct: 342 TYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEM 401

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIG 426
             +   +  D   +   + G  +  R+  A D+F+ +   G    +  Y++L+    + G
Sbjct: 402 --IHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEG 459

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            + KA  LF  M+   L+ +   ++I I    + G++ +A +  +++     +P+V  Y 
Sbjct: 460 YLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYT 519

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            +   LCK G +D A+                                    E    M  
Sbjct: 520 TIINNLCKEGLLDEAL------------------------------------EAFRNMEG 543

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
           +GCPP+E   + II G  ++     A ++   +R+R  + EA T  +
Sbjct: 544 DGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGTTTW 590



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 159/384 (41%), Gaps = 42/384 (10%)

Query: 201 PDVFAYTAMIR-VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           P +  +T ++  ++   +   A + + ++M+   +  D+     LI       RV     
Sbjct: 92  PCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFS 151

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           +F +M + G+  D   +  LI GL   GK  +A +   D   SG +  +  Y +II GLC
Sbjct: 152 VFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLC 211

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQMEKLKFSVA 377
           ++ +   A  LF+   +    P+  T N L+  +C                         
Sbjct: 212 KIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLC------------------------- 246

Query: 378 ADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
                       K++ +  ALD+F  +K K  S  +  YN L+  L      K+A  L  
Sbjct: 247 ------------KDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLN 294

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M  LN+  N  +F++ +    + G + EA      + EM   P V  Y+ L  G     
Sbjct: 295 EMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRM 354

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           EI  A  L  D +      P  F Y + I   C++   ++  ++ NEM  +G  P+ V  
Sbjct: 355 EIVEARKLF-DAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNY 413

Query: 557 SAIISGMCKHGTLEEARKVFTNLR 580
           + +I G+C+ G L EA+ +F N+ 
Sbjct: 414 NTLIHGLCQLGRLREAQDLFKNMH 437



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 121/260 (46%), Gaps = 1/260 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+++E   + + M     +PDV  Y++++   +    +    ++++ M     + D  +
Sbjct: 318 EGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFS 377

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK  R+    +LF EM   G+  D   Y  LI GL   G++ +A DL K++ 
Sbjct: 378 YNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMH 437

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +G   DL  Y+ ++ G C+     KA++LF V     L PD +  N L+    + G + 
Sbjct: 438 SNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLK 497

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILM 419
           +  KL +++          +       + KE  +  AL+ F  ++G G       YN+++
Sbjct: 498 DARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVII 557

Query: 420 GALLEIGEVKKALYLFGKMR 439
              L+  +  +A  L G+MR
Sbjct: 558 RGFLQYKDESRAAQLIGEMR 577



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 60/129 (46%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + +   +   M+    KPD+  Y  +I  +    NL    +++ E+    +  +V  
Sbjct: 458 EGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQI 517

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I  LCK G +    E FR M+ +G   D   Y V+I G +      +A  L+ ++ 
Sbjct: 518 YTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMR 577

Query: 301 DSGYRADLG 309
           D G+ A+ G
Sbjct: 578 DRGFVAEAG 586


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 129/543 (23%), Positives = 232/543 (42%), Gaps = 68/543 (12%)

Query: 62  HYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLR-RVTPD 120
           HY+P +  +    DP   +L      I +          F+WGP     L  L+ ++   
Sbjct: 43  HYVPMEGRRVLRKDPNARKLDERFIRILKI---------FKWGPDAEKALEVLKLKLDIR 93

Query: 121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFR----------- 169
           LV EVLK++    +  +FF WAGK++ ++H+  +Y AL  CL  N L             
Sbjct: 94  LVREVLKIDVEVHVKIQFFKWAGKKRNFEHDSTTYMALIRCLDENRLVGELWRTIQDMVK 153

Query: 170 -----AADQVPELMDSQGRIA---EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221
                   ++ E++   GR+    + L I  +++   C+P    Y ++I +L  E + + 
Sbjct: 154 SPCAIGPSELSEIVKILGRVKMVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEK 213

Query: 222 CLRVWEEM-KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280
              ++ EM  +     D + Y  LI    K  R      LF EMKENG+     IY  L+
Sbjct: 214 VHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLM 273

Query: 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
                 GKV +A +L+ ++        +  Y  +I GL +  + + AY +++  ++D   
Sbjct: 274 GIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCK 333

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400
           PD   +N L+                                    ++G+ +R+  A+++
Sbjct: 334 PDVVLMNNLIN-----------------------------------ILGRSDRLKEAVEL 358

Query: 401 FEELKGKGYS-SVPIYNILMGALLE-IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV 458
           FEE++    + +V  YN ++ +L E      +A     +M+   +  +S ++SI I    
Sbjct: 359 FEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFC 418

Query: 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE 518
           ++  + +A     ++ E    P  AAY  L   L K    +AA  L ++   N  S    
Sbjct: 419 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVR 478

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
             YA+ I H  + G   + + + NEM + GC P+    +A+I+GM +   ++EA  +F  
Sbjct: 479 V-YAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRT 537

Query: 579 LRE 581
           + E
Sbjct: 538 MEE 540



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 154/355 (43%), Gaps = 41/355 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E L ++ +MR   C P V+ YT +IR L     ++    V++ M KD  + DV+  
Sbjct: 280 GKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLM 339

Query: 242 VTLIMGLCKGGRVVRGHELFREM------------------------------------K 265
             LI  L +  R+    ELF EM                                    K
Sbjct: 340 NNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMK 399

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           ++G++     Y +LI+G     +V KA  LL+++ + G+      Y S+I  L + K+++
Sbjct: 400 KDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYE 459

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
            A +LF+   ++  +        ++    + GR +    L  +M+KL      D+  +  
Sbjct: 460 AANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKL--GCIPDVYAYNA 517

Query: 386 FLVGKEERIMM--ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            + G     MM  A  +F  ++  G +  +  +NI++  L   G  K+A+ +F KM+   
Sbjct: 518 LITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSST 577

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           ++ +++S++  + C   +G   EA +   ++        +  Y+ + + + K+ E
Sbjct: 578 IKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYDLITYSSILEAVGKVDE 632



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 36/230 (15%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVW-EEMKKDLVE 235
           ++    R+ E +E+ E+MR   C P+V  Y  +I+ L  ++   +    W E MKKD V 
Sbjct: 345 ILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVV 404

Query: 236 ADVMAYVTLIMGLCKGGRVVRG-----------------------------------HEL 260
                Y  LI G CK  RV +                                    +EL
Sbjct: 405 PSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANEL 464

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F+E+KEN       +Y V+I+     G+  +A  L  ++   G   D+  YN++I G+ R
Sbjct: 465 FQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVR 524

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
               D+A+ LF    ++   PD ++ N +L   A  G      ++ A+M+
Sbjct: 525 ADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMK 574


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 191/428 (44%), Gaps = 51/428 (11%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           + GR AE   +L       C+PDV AY AM+        LDA  R+  +M    +E D  
Sbjct: 106 ASGRTAEARRVLAA-----CEPDVMAYNAMVAGYCVTGQLDAARRLVADMP---MEPDSY 157

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TLI GLC  GR      +  +M   G + D   Y +L+E         +A  LL ++
Sbjct: 158 TYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEM 217

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMG 357
              G   D+  YN ++ G+C+  + D A +  +        P+  + N +L  +C AE  
Sbjct: 218 RAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAE-- 275

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYN 416
           R ++  KL+A+M +                                   KGY  +V  +N
Sbjct: 276 RWEDAEKLMAEMSQ-----------------------------------KGYPPNVVTFN 300

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           +L+  L   G V+ A+ +  ++       NSLS++  +    +   +  A      ++  
Sbjct: 301 MLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSR 360

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P + +YN L   LC+ GE+DAA+ L+   L +    P    Y   I  + ++G+ ++
Sbjct: 361 GCYPDIVSYNTLLTALCRGGEVDAAVELLHQ-LKDKGCTPVLISYNTVIDGLTKAGKTKE 419

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
            +E+LNEM  +G  P+ +  S I SG+C+   +EEA + F  +++  +    NT++Y+ I
Sbjct: 420 ALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGI--RPNTVLYNAI 477

Query: 597 LIEHMKKK 604
           L+   K++
Sbjct: 478 LLGLCKRR 485



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 176/390 (45%), Gaps = 2/390 (0%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PD + Y  +IR L         L V ++M +     DV+ Y  L+   CK     +  +
Sbjct: 153 EPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMK 212

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L  EM+  G   D   Y V++ G+  EG+V  A + LK L   G   +   YN ++ GLC
Sbjct: 213 LLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLC 272

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
             ++++ A KL     Q    P+  T N L+      G ++   ++L Q+ K   +  + 
Sbjct: 273 TAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSL 332

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM 438
                     K++++  A+   E +  +G Y  +  YN L+ AL   GEV  A+ L  ++
Sbjct: 333 SYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQL 392

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
           +        +S++  I    ++G   EA E  N+++     P +  Y+ ++ GLC+   I
Sbjct: 393 KDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRI 452

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           + A+      + ++   P    Y   +L +C+  E    I++   M   GC PNE   + 
Sbjct: 453 EEAIRAFCK-VQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTI 511

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           +I G+   G ++EAR++   L  R ++++ 
Sbjct: 512 LIEGLTYEGLVKEARELLGELCSRGVVSKG 541



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 18/209 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
            QKGY  N  ++N L   L R  L   A                +E+L+++ +  C P+ 
Sbjct: 288 SQKGYPPNVVTFNMLISFLCRRGLVEPA----------------MEVLDQIPKYGCTPNS 331

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            +Y  ++     ++ +D  +   E M       D+++Y TL+  LC+GG V    EL  +
Sbjct: 332 LSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQ 391

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +K+ G       Y  +I+GL   GK  +A +LL ++V  G + D+  Y++I  GLCR  +
Sbjct: 392 LKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDR 451

Query: 324 FDKAYKLFEVTVQD-DLAPDFSTVNPLLV 351
            ++A + F   VQD  + P+    N +L+
Sbjct: 452 IEEAIRAF-CKVQDMGIRPNTVLYNAILL 479


>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 122/541 (22%), Positives = 222/541 (41%), Gaps = 62/541 (11%)

Query: 68  KTQSPPSDPKTFQLQRHL---SPIARFITDAFRK--NQFQWGPQVVTELSKLR-RVTPDL 121
           +  +P  +   F   R +    P  R + + F +    F+WG      +  L+ +V   L
Sbjct: 34  RVSTPSPEASNFSFNRKVLRRDPSVRTLDERFIRILKIFKWGSDAEKAIEVLKLKVDHRL 93

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNL----FRAA------ 171
           V +VL ++       +FF WAGK++ ++H+  +Y AL  CL  + L    +R        
Sbjct: 94  VHQVLDIDVEIRAKIQFFKWAGKRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRS 153

Query: 172 ---------DQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
                     ++ +++     + + L +  +++   C P    Y  +I +L  E + +  
Sbjct: 154 PCSVGPAEWSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKI 213

Query: 223 LRVWEEM-KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
             ++ E+  +     D + Y  LI    K  R      LF EMKENG+     IY  ++ 
Sbjct: 214 HELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILA 273

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
                 KV  A  L++++   G    +  Y  +I GL +V + D AY LF   ++D   P
Sbjct: 274 MYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKP 333

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVF 401
           D   +N L+      GR+++  KL  +M+ L+ +                          
Sbjct: 334 DVVLINNLINILGRAGRLEDALKLFGKMDSLQCA-------------------------- 367

Query: 402 EELKGKGYSSVPIYNILMGALLEI-GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
                    +V  YN ++ A+ E      +A   F KM+   +  +S +++I I    ++
Sbjct: 368 --------PNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKT 419

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
             + +A     ++ E    P  AAY  L   L +    +AA  L ++   N         
Sbjct: 420 NRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARV- 478

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           YA+ I H    G     +++  E  + GC P+    +A++SGM + G ++EA  +  N+R
Sbjct: 479 YAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMR 538

Query: 581 E 581
           E
Sbjct: 539 E 539



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 136/285 (47%), Gaps = 8/285 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ +   +   M ++ CKPDV     +I +L     L+  L+++ +M       +V+ Y
Sbjct: 314 GRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTY 373

Query: 242 VTLIMGLCKGGRVVRGHEL-FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
            T+I  + +         L F +MK NGI      Y +LI+G     +V KA  LL+++ 
Sbjct: 374 NTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMD 433

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV-CCAEMGRM 359
           + G+      Y S+I  L R K+++ A +LF+  ++++     + V  +++      GR+
Sbjct: 434 EKGFPPCPAAYCSLIDSLGRAKRYEAANELFQ-ELKENCGRSSARVYAVMIKHFGNCGRL 492

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYN 416
            +   L  + EKL    + D+  +   + G     M+  A  +   ++  G +  +  +N
Sbjct: 493 SDAVDLFCEXEKL--GCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHN 550

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           I++  L + G  K+A+ +F KM+   +  +++S++  + C   +G
Sbjct: 551 IILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAG 595



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 107/247 (43%), Gaps = 2/247 (0%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           +  + +S+   +E     EKM+ N   P  F Y  +I        ++  L + EEM +  
Sbjct: 377 IKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKG 436

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
                 AY +LI  L +  R    +ELF+E+KEN       +Y V+I+     G++  A 
Sbjct: 437 FPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAV 496

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           DL  +    G   D+  YN+++ G+ R    D+A+ L     ++   PD  + N +L   
Sbjct: 497 DLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGL 556

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG--YSS 411
           A+ G      ++  +M++ +    A         + +     MA  +  E+K KG  Y S
Sbjct: 557 AKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDS 616

Query: 412 VPIYNIL 418
           +   +IL
Sbjct: 617 ITYSSIL 623



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 91/198 (45%), Gaps = 19/198 (9%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-------------------GRIA 185
           +KG+    A+Y +L   L R   + AA+++ + +                      GR++
Sbjct: 434 EKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLS 493

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + +++  +  +  C PDV+ Y A++  +     +D    +   M+++    D+ ++  ++
Sbjct: 494 DAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIIL 553

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GL K G   R  E+F +MKE+ I+ D   Y  ++  L   G    A  L++++   G+ 
Sbjct: 554 NGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFE 613

Query: 306 ADLGIYNSIIGGLCRVKQ 323
            D   Y+SI+  + +V +
Sbjct: 614 YDSITYSSILEAVGKVDE 631


>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like, partial [Glycine max]
          Length = 594

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 187/387 (48%), Gaps = 13/387 (3%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           DV+ Y  +++ L  E  +D  +RV +EM+   +  DV+ Y TLI G  K      G  L 
Sbjct: 136 DVWTYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLL 195

Query: 262 REMKENGILIDRAI-YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
            EMK  G +   A+ + ++++    EGK+ +A D +  +V+SG   D   YN++I G C+
Sbjct: 196 EEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCK 255

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF-----S 375
             +  +A+++ +   +  L PD  T+N +L       + +  ++L  +  K  +     +
Sbjct: 256 AGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYILDEVT 315

Query: 376 VAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYL 434
               +  +F+   GK+E    AL ++EE+K +G   SV  YN L+  L   G+  +A+  
Sbjct: 316 YGTLIMGYFK---GKQED--KALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDK 370

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
             ++    L  + +S +I I  +   G + +A + HNK++  S  P +   N L +GLC+
Sbjct: 371 LNELLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCR 430

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
           +  ++ A  L    +    S      Y   I ++C+ G  ++  +++ +M  +   P++ 
Sbjct: 431 VDMLEKAFKLFNSWISKQNSVDV-VTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQY 489

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRE 581
             +AI+  +   G  EEA K  + L E
Sbjct: 490 TYNAIVRALTHAGRTEEAEKFMSKLSE 516



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 136/335 (40%), Gaps = 74/335 (22%)

Query: 106 QVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYK------------HNFA 153
           +V  E+  L+ + PD+V          TL    F W G  +G++             N  
Sbjct: 158 RVRDEMESLKLI-PDVVT-------YNTLIDGCFKWRGSTEGFRLLEEMKSRGGVEPNAV 209

Query: 154 SYNALAYCLSR-NNLFRAADQVPELMDS------------------QGRIAEMLEILEKM 194
           ++N +     +   +  A+D V ++++S                   G++ E   ++++M
Sbjct: 210 THNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCKAGKLGEAFRMMDEM 269

Query: 195 RRNLCKPDVFAYTAMIRVLAAER-----------------------------------NL 219
            R   KPD+     M+  L  E+                                     
Sbjct: 270 ARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYILDEVTYGTLIMGYFKGKQE 329

Query: 220 DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL 279
           D  L++WEEMKK  +   V++Y  LI GLC  G+  +  +   E+ E G++ D     ++
Sbjct: 330 DKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKLNELLEKGLVPDEVSCNII 389

Query: 280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339
           I G   EG V KA      +V + ++ D+   N ++ GLCRV   +KA+KLF   +    
Sbjct: 390 IHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCRVDMLEKAFKLFNSWISKQN 449

Query: 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
           + D  T N ++    + GR+D  F L+  ME  KF
Sbjct: 450 SVDVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKF 484



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 16/206 (7%)

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ-CHVESGDILEACECH 470
           V  YN L+  L + G++ +A+ +  +M  L L  + ++++  I  C    G    + E  
Sbjct: 137 VWTYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRG----STEGF 192

Query: 471 NKIIEMSQV----PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALT 524
             + EM       P+   +N + K   K G+I+ A   V   +  V SG  P  F Y   
Sbjct: 193 RLLEEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAV---VKMVESGVSPDCFTYNTM 249

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           I   C++G+  +   +++EM ++G  P+    + ++  +C     EEA ++    R+R  
Sbjct: 250 INGFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGY 309

Query: 585 LTEANTIVYDEILIEHMKKKTADLVL 610
           + +   + Y  +++ + K K  D  L
Sbjct: 310 ILDE--VTYGTLIMGYFKGKQEDKAL 333



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 32/177 (18%), Positives = 70/177 (39%), Gaps = 3/177 (1%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGK---MRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
           S P+ +  + A +   +   A  LF            ++  +++  ++   + G I EA 
Sbjct: 98  SKPLLDTSLAAYVHANQPHLAFQLFQNELIXXXXXXSIDVWTYNTLVKGLCDEGKIDEAI 157

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
              +++  +  +P V  YN L  G  K         L+ +        P    + + +  
Sbjct: 158 RVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLLEEMKSRGGVEPNAVTHNIMVKW 217

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
             + G+  +  + + +M + G  P+    + +I+G CK G L EA ++   +  + L
Sbjct: 218 FGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCKAGKLGEAFRMMDEMARKGL 274



 Score = 42.0 bits (97), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 12/120 (10%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA-------AERNLDACLRVWEEMK--- 230
           +GR+ E  +++  M     +PD + Y A++R L        AE+ +       + +K   
Sbjct: 466 EGRLDEAFDLMTDMEVKKFEPDQYTYNAIVRALTHAGRTEEAEKFMSKLSETGQAVKTHD 525

Query: 231 --KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
             ++L  +  + Y   I  LC  G+     +LF+E ++ G+ +++  Y  L++G +   K
Sbjct: 526 TSQELDASSDIMYSQQISDLCTQGKYKEAMKLFQESEQKGVSLNKYTYIKLMDGFLKRRK 585


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 140/634 (22%), Positives = 247/634 (38%), Gaps = 121/634 (19%)

Query: 89  ARFITDAFRKNQFQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKG 147
           AR I DA       +G +    L + R +++  LV EVL++   P+    FF WAG+Q G
Sbjct: 101 ARAIADAVSGVDDVFGRKSQKFLRQFREKLSESLVIEVLRLIARPSAVISFFVWAGRQIG 160

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-----------------------GRI 184
           YKH    YNAL   + R++     ++VPE    Q                       G  
Sbjct: 161 YKHTAPVYNALVDLIVRDD----DEKVPEEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSF 216

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK-------------- 230
           +  LE L +++    +P    Y  +I+       LD+   +  EM               
Sbjct: 217 SIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCF 276

Query: 231 -------------KDLVEA-----DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
                          LVE      D + Y  LI GLC+        +    M+    L +
Sbjct: 277 AYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPN 336

Query: 273 RAIYGVLIEGLVGEGKVGK-----------------------------------ACDLLK 297
              Y  L+ G + + ++G+                                   A  LLK
Sbjct: 337 VVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLK 396

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQ------FDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
            +V  G+     +YN +IG +C  K        D A K +   +   +  +   V+    
Sbjct: 397 KMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTR 456

Query: 352 CCAEMGRMDNFFKLLAQMEKLKF-SVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-Y 409
           C    G+ +  F ++ +M    F    +   K   +L     ++ +A  +FEE+K  G  
Sbjct: 457 CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNA-SKMELAFLLFEEMKRGGLV 515

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
           + V  Y I++ +  + G +++A   F +MR +    N ++++  I  ++++  +  A E 
Sbjct: 516 ADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANEL 575

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG---------------NVAS 514
              ++    +P++  Y+ L  G CK G+++ A  +     G               + + 
Sbjct: 576 FETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSE 635

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P    Y   +   C+S   E+  ++L+ M+ EGC PN+++  A+I G+CK G L+EA++
Sbjct: 636 RPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 695

Query: 575 VFTNLRERKLLTEANTIVYDEILIEHMKKKTADL 608
           V T + E      A    Y  ++  + K K  DL
Sbjct: 696 VKTEMSEHGF--PATLYTYSSLIDRYFKVKRQDL 727



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 176/410 (42%), Gaps = 35/410 (8%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G+  +   ++ +M      PD   Y+ ++  L     ++    ++EEMK+  + ADV 
Sbjct: 460 SAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVY 519

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  ++   CK G + +  + F EM+E G   +   Y  LI   +   KV  A +L + +
Sbjct: 520 TYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETM 579

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G   ++  Y+++I G C+  Q +KA ++FE        PD                +
Sbjct: 580 LSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD----------------V 623

Query: 360 DNFFKLLAQMEKLK--FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YN 416
           D +FK      +     +  A L+ F      K  R+  A  + + +  +G     I Y+
Sbjct: 624 DMYFKQYDDNSERPNVVTYGALLDGF-----CKSHRVEEARKLLDAMSMEGCEPNQIVYD 678

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  L ++G++ +A  +  +M          ++S  I  + +      A +  +K++E 
Sbjct: 679 ALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLEN 738

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           S  P+V  Y  +  GLCK+G+ D A     MM  + C  NV +      Y   I      
Sbjct: 739 SCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT------YTAMIDGFGMI 792

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           G+ E  +E+L  M  +G  PN V    +I   CK+G L+ A  +   +++
Sbjct: 793 GKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQ 842



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 110/474 (23%), Positives = 195/474 (41%), Gaps = 69/474 (14%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E ++ L +MR   C P+V  Y+ ++     ++ L  C RV   M  +        + +L+
Sbjct: 320 EAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLV 379

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              C  G     ++L ++M + G +    +Y +LI  + G+ K    CDLL DL +  Y 
Sbjct: 380 HAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGD-KDSLNCDLL-DLAEKAYS 437

Query: 306 ADLGI--------YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
             L           +S    LC   +++KA+ +    +     PD ST + +L       
Sbjct: 438 EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNAS 497

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPI 414
           +M+  F L  +M++    + AD+  +   +    K   I  A   F E++  G + +V  
Sbjct: 498 KMELAFLLFEEMKR--GGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVT 555

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE-----C 469
           Y  L+ A L+  +V  A  LF  M       N +++S  I  H ++G + +AC+     C
Sbjct: 556 YTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMC 615

Query: 470 HNKII-----------EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE 518
            +K +           + S+ P+V  Y  L  G CK   ++ A  L+ D +      P +
Sbjct: 616 GSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLL-DAMSMEGCEPNQ 674

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEG------------------------------ 548
             Y   I  +C+ G+ ++  EV  EM++ G                              
Sbjct: 675 IVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSK 734

Query: 549 -----CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
                C PN VI + +I G+CK G  +EA K+   + E+    + N + Y  ++
Sbjct: 735 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG--CQPNVVTYTAMI 786



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 84/425 (19%), Positives = 178/425 (41%), Gaps = 41/425 (9%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           N  +Y+AL     +      A Q+ E M     + ++    ++   N  +P+V  Y A++
Sbjct: 587 NIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALL 646

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
                   ++   ++ + M  +  E + + Y  LI GLCK G++    E+  EM E+G  
Sbjct: 647 DGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFP 706

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
                Y  LI+      +   A  +L  ++++    ++ IY  +I GLC+V + D+AYKL
Sbjct: 707 ATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKL 766

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK 390
            ++  +    P+  T   ++         D F                          G 
Sbjct: 767 MQMMEEKGCQPNVVTYTAMI---------DGF--------------------------GM 791

Query: 391 EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
             +I   L++ E +  KG + +   Y +L+    + G +  A  L  +M+  +   ++  
Sbjct: 792 IGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAG 851

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           +   I+    + + +E+    ++I +    P ++ Y  L   L K   ++ A+ L+ + +
Sbjct: 852 YRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEE-V 908

Query: 510 GNVASGPTEFK--YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
              ++   ++   Y   I  +C + + E   ++ +EMT++G  P      ++I G+ ++ 
Sbjct: 909 ATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNS 968

Query: 568 TLEEA 572
            + EA
Sbjct: 969 KISEA 973



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 29/174 (16%)

Query: 126 LKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIA 185
           L V +N     K  HW     GY+     +N                   E ++S G   
Sbjct: 830 LDVAHNLLEEMKQTHWPTHTAGYRKVIEGFN------------------KEFIESLG--- 868

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM---KKDLVEADVMAYV 242
               +L+++ ++   P +  Y  +I  L   + L+  LR+ EE+      LV+     Y 
Sbjct: 869 ----LLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSS-TYN 923

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           +LI  LC   +V    +LF EM + G++ +   +  LI+GL    K+ +A  LL
Sbjct: 924 SLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLL 977


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 116/459 (25%), Positives = 209/459 (45%), Gaps = 52/459 (11%)

Query: 183 RIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAE---RNLDACLRVWEEMKKDLVEADV 238
           R  E L+IL      L C PDVF+Y+ +++ L  +      D  LR+  E    +   DV
Sbjct: 161 RTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAE-GGAVCSPDV 219

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           +AY T+I G  K G V +  +LF+EM + GI  D   Y  ++  L     + KA   L+ 
Sbjct: 220 VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQ 279

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +V+ G   +   YN++I G     Q+ +A ++F+   +  + PD  T N L+    + G+
Sbjct: 280 MVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGK 339

Query: 359 MD---NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYSSVP 413
           +    + F  +A   +       D+  +   L G   +  ++   D+F+ + G G + V 
Sbjct: 340 IKEARDVFDTMAMKGQ-----NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVI 394

Query: 414 -IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             +N+L+ A    G + KA+ +F +MR   ++ N L+++  I      G + +A E  N+
Sbjct: 395 CTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQ 454

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG---------------------- 510
           +I+    P   AY+CL +G C  G +  A  L+ + +                       
Sbjct: 455 MIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGR 514

Query: 511 ------------NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
                       NV   PT   Y++ +   C  G+ EK + V + M   G  PN+V+   
Sbjct: 515 VMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGT 574

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +++G CK G ++E   +F  + ++ +  + +TI+Y+ I+
Sbjct: 575 LVNGYCKIGRIDEGLSLFREMLQKGI--KPSTILYNIII 611



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 198/418 (47%), Gaps = 20/418 (4%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + +M ++ + M  +   P +  +  +I+  A    LD  + ++ EM+   V+ +V+
Sbjct: 371 TKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVL 430

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I  LC+ G++    E F +M + G+  D+  Y  LI+G    G + KA +L+ ++
Sbjct: 431 TYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEI 490

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +++G   D+ +++SII  LC++ +   A  +F++TV   L P     + L+     +G+M
Sbjct: 491 MNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKM 550

Query: 360 DNFFKLLAQMEKLKFSVAADLEK---FFEFLVG---KEERIMMALDVFEELKGKGYS-SV 412
           +   ++   M      V+A +E     +  LV    K  RI   L +F E+  KG   S 
Sbjct: 551 EKALRVFDAM------VSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPST 604

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
            +YNI++  L E G    A   F +M    + +N  ++SI ++   ++    EA     +
Sbjct: 605 ILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKE 664

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA-SG--PTEFKYALTILHVC 529
           +  M+    +   N +  G+ +   ++ A    +D   +++ SG  P    Y++ I ++ 
Sbjct: 665 LRAMNVKIDIITLNTMIAGMFQTRRVEEA----KDLFASISRSGLVPCVVTYSIMITNLI 720

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           + G  E+  ++ + M   GC P+  + + ++  + K   +  A    + + ER    E
Sbjct: 721 KEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLE 778



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 180/387 (46%), Gaps = 13/387 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE- 259
           P    Y  ++         +  L  + ++ +  +  D++    L+ G C+  R     + 
Sbjct: 109 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDI 168

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY--RADLGIYNSIIGG 317
           L     E G + D   Y +L++ L  +GK G+A DLL+ + + G     D+  YN++I G
Sbjct: 169 LLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDG 228

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
             +    +KA  LF+  VQ  + PDF T + ++    +   MD     L QM  +   V 
Sbjct: 229 FFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQM--VNKGVL 286

Query: 378 ADLEKFFEFLVGKEE--RIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYL 434
            +   +   + G     +   A+ VF+E++ +     V  +N+LMG+L + G++K+A  +
Sbjct: 287 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDV 346

Query: 435 FGK--MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
           F    M+G N +V   S++I +  +   G +++  +  + ++     P +  +N L K  
Sbjct: 347 FDTMAMKGQNPDV--FSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAY 404

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
              G +D AM++  + + +    P    Y   I  +CR G+ +  +E  N+M  +G  P+
Sbjct: 405 ANCGMLDKAMIIFNE-MRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPD 463

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNL 579
           +     +I G C HG+L +A+++ + +
Sbjct: 464 KYAYHCLIQGFCTHGSLLKAKELISEI 490



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 109/500 (21%), Positives = 203/500 (40%), Gaps = 72/500 (14%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELM----------------------DSQG 182
           Q+G   +F +Y+++ + L +    RA D+    +                       S G
Sbjct: 247 QRGIPPDFVTYSSVVHALCKA---RAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTG 303

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           +  E + + ++MRR    PDV  +  ++  L     +     V++ M       DV +Y 
Sbjct: 304 QWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYN 363

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++ G    G +V   +LF  M  +GI      + VLI+     G + KA  +  ++ D 
Sbjct: 364 IMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDH 423

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + ++  Y ++I  LCR+ + D A + F   +   +APD    + L+      G +   
Sbjct: 424 GVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKA 483

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKG-YSSVPIYNILM 419
            +L++++  +   +  D+  F   +  + K  R+M A ++F+     G + +  +Y++LM
Sbjct: 484 KELISEI--MNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLM 541

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
                +G+++KAL +F  M    +E                                   
Sbjct: 542 DGYCLVGKMEKALRVFDAMVSAGIE----------------------------------- 566

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+   Y  L  G CKIG ID  + L R+ L      P+   Y + I  +  +G       
Sbjct: 567 PNDVVYGTLVNGYCKIGRIDEGLSLFREMLQK-GIKPSTILYNIIIDGLFEAGRTVPAKV 625

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIV---Y 593
             +EMT+ G   N+   S ++ G+ K+   +EA  +F  LR   +   +   NT++   +
Sbjct: 626 KFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMF 685

Query: 594 DEILIEHMKKKTADLVLSGL 613
               +E  K   A +  SGL
Sbjct: 686 QTRRVEEAKDLFASISRSGL 705



 Score = 42.4 bits (98), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           N L KG C+    D A+ ++      +   P  F Y++ +  +C  G++ +  ++L  M 
Sbjct: 150 NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA 209

Query: 546 QEG--CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           + G  C P+ V  + +I G  K G + +A  +F  + +R +
Sbjct: 210 EGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGI 250


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 110/483 (22%), Positives = 216/483 (44%), Gaps = 24/483 (4%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           ++ G   N  +YN L Y L ++     A +V + M   G                    +
Sbjct: 163 REAGMSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDV 222

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
             +L +L +M     KP+V++YT  IRVL      D    +  +M+    + DV+ +  +
Sbjct: 223 DTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVI 282

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC  GR+     +F +MK +    DR  Y  L++     G      ++   +V  GY
Sbjct: 283 IQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGY 342

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  Y +++  LC+V + D+A  +F+   +  ++P+  + N L+    +    D   +
Sbjct: 343 NDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALE 402

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
           L   M     S        F    GK  + + A+  +E +K KG    V   N ++ +L 
Sbjct: 403 LFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLA 462

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
             G +  A  +F +++ + +  +++++++ I+C  ++    EA    + ++E   VP V 
Sbjct: 463 GSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVL 522

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           A N L   L K G+ + A  L    L  +   PT   Y   +  + R G+ ++++++L E
Sbjct: 523 ALNSLIDTLYKGGKGNEAWQLFHK-LKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEE 581

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIVYDEILIEH 600
           MT+   PPN +  + ++  + K+G +  A  +  ++ E+     L+  NT++Y  I  E 
Sbjct: 582 MTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEER 641

Query: 601 MKK 603
           +++
Sbjct: 642 LEE 644



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/438 (25%), Positives = 192/438 (43%), Gaps = 20/438 (4%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K KG   + A+ NA+ Y L+                  GR+     +  +++     PD 
Sbjct: 443 KSKGIVPDVAAANAVLYSLA----------------GSGRLGMAKRVFYELKAMGVSPDT 486

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT MI+  +     D  +  + +M +     DV+A  +LI  L KGG+     +LF +
Sbjct: 487 ITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHK 546

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +KE  I      Y  L+ GL  EGKV +   LL+++  + Y  +L  YN+++  L +  +
Sbjct: 547 LKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGE 606

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            + A  +     +   APD S+ N ++    +  R++  F++  QM+K+     A L   
Sbjct: 607 VNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQMKKILAPDYATLCTI 666

Query: 384 FEFLVGKEERIMMALDVFEE--LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
               V K   +  AL   +E  LK         ++ LM  +L+   V+K++     +   
Sbjct: 667 LPSFV-KNGLMKEALHTVKEYILKAGCNVDKSSFHSLMEGILKKAGVEKSIEFAENIASR 725

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            + +N       I+   +    LEA +  NK   +       +YN L +GL     ID A
Sbjct: 726 GILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIA 785

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
             L  + +  +  GP EF Y L +  + +S   E++++V  EM ++G     V  + IIS
Sbjct: 786 EDLFTE-MKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIIS 844

Query: 562 GMCKHGTLEEARKVFTNL 579
           G+ K   LE+A  ++ NL
Sbjct: 845 GLVKSKRLEQAIDLYYNL 862



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 117/519 (22%), Positives = 209/519 (40%), Gaps = 55/519 (10%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           R V  D V  +L+   +P  A + F  A +Q    H   S N +                
Sbjct: 64  RVVGTDSVVHMLRSAPDPAEALELFTAAARQPTKVHTTESCNYML--------------- 108

Query: 175 PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
            ELM + GR+ +M ++ + M++ + K +V  +  +   +  E  L +       M++  +
Sbjct: 109 -ELMRAHGRVGDMAQVFDLMQKQVVKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAGM 167

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
             +   Y  LI  L K G      E+++ M E+GI      Y VL+     +  V     
Sbjct: 168 SLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLW 227

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           LL ++   G + ++  Y   I  L +  +FD+AY +          PD  T   ++    
Sbjct: 228 LLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLC 287

Query: 355 EMGRMDN----FFKLLAQMEKL----------KFSVAADLEKFFEFL------------- 387
           + GR+ +    F+K+ A  +K           K   + D +   E               
Sbjct: 288 DAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIV 347

Query: 388 --------VGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKM 438
                   + +  R+  AL VF+E+K KG S     YN L+   L+     +AL LF  M
Sbjct: 348 SYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHM 407

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
                  N  +  + I  + +SG  L+A + +  +     VP VAA N +   L   G +
Sbjct: 408 NACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRL 467

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
             A  +  + L  +   P    Y + I    ++ +A++ +   ++M + GC P+ +  ++
Sbjct: 468 GMAKRVFYE-LKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNS 526

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +I  + K G   EA ++F  L+E K+  E     Y+ +L
Sbjct: 527 LIDTLYKGGKGNEAWQLFHKLKEMKI--EPTNGTYNTLL 563



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 111/503 (22%), Positives = 189/503 (37%), Gaps = 88/503 (17%)

Query: 148  YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYT 207
            Y  N  +YN +  CLS+N                G +   +++L  M    C PD+ +Y 
Sbjct: 587  YPPNLITYNTVLDCLSKN----------------GEVNCAIDMLYSMTEKGCAPDLSSYN 630

Query: 208  AMIRVLAAERNLDACLRVWEEMKKDLV--------------------------------- 234
             ++  L  E  L+   R++ +MKK L                                  
Sbjct: 631  TVMYGLIKEERLEEAFRMFCQMKKILAPDYATLCTILPSFVKNGLMKEALHTVKEYILKA 690

Query: 235  --EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
                D  ++ +L+ G+ K   V +  E    +   GIL++      LI  L    K  +A
Sbjct: 691  GCNVDKSSFHSLMEGILKKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEA 750

Query: 293  CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
              L       G     G YNS+I GL      D A  LF    +    PD  T N +L  
Sbjct: 751  HQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDA 810

Query: 353  CAEMGRMDNFFKLLAQMEKLKF-SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS 411
              +  R++   K+  +M +  + S           LV K +R+  A+D++  L  +G+S 
Sbjct: 811  MGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLV-KSKRLEQAIDLYYNLMSEGFSP 869

Query: 412  VP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
             P  Y  L+  LL+ G++  A  LF +M     E N   ++I +  H  +G+    C+  
Sbjct: 870  TPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLF 929

Query: 471  NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR------------------DCLGNV 512
             K++E    P + +Y  L   LC  G ++  +   R                  D LG  
Sbjct: 930  EKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKS 989

Query: 513  ----------------ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
                               P  + Y   ILH+ ++G+A +  ++  E+ ++G  P+    
Sbjct: 990  ERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTY 1049

Query: 557  SAIISGMCKHGTLEEARKVFTNL 579
            +A+I G    G+ + A   +  +
Sbjct: 1050 NALIRGYSVSGSTDNAYAAYGQM 1072



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 150/334 (44%), Gaps = 17/334 (5%)

Query: 153  ASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRV 212
             SYN+L   L   NL   A+                ++  +M+R  C PD F Y  ++  
Sbjct: 767  GSYNSLIRGLVDENLIDIAE----------------DLFTEMKRLGCGPDEFTYNLILDA 810

Query: 213  LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
            +     ++  L+V +EM +   E+  + Y T+I GL K  R+ +  +L+  +   G    
Sbjct: 811  MGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPT 870

Query: 273  RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
               YG L++GL+  GK+  A +L  ++++ G   +  IYN ++ G       +   +LFE
Sbjct: 871  PCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFE 930

Query: 333  VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392
              V+  + PD  +   L+      GR+++      Q+ +L       +       +GK E
Sbjct: 931  KMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSE 990

Query: 393  RIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
            RI  A+ +F E+K KG   ++  YN L+  L + G+  +A  ++ ++     + +  +++
Sbjct: 991  RIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYN 1050

Query: 452  IAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
              I+ +  SG    A   + ++I     P+ + Y
Sbjct: 1051 ALIRGYSVSGSTDNAYAAYGQMIVGGCQPNSSTY 1084



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 151/355 (42%), Gaps = 12/355 (3%)

Query: 204  FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            F    +IR L   +      +++ + K   V     +Y +LI GL     +    +LF E
Sbjct: 732  FFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTE 791

Query: 264  MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
            MK  G   D   Y ++++ +    +V +   + K++   GY +    YN+II GL + K+
Sbjct: 792  MKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKR 851

Query: 324  FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
             ++A  L+   + +  +P   T  PLL    + G+M +   L  +M  L++    +   +
Sbjct: 852  LEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEM--LEYGCEPNCTIY 909

Query: 384  FEFL-----VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
               L      G  E +     +FE++  +G +  +  Y IL+  L   G +   L  F +
Sbjct: 910  NILLNGHRIAGNTENV---CQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQ 966

Query: 438  MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
            +  L LE + + +++ I    +S  I EA    N++ +   +P++  YN L   L K G+
Sbjct: 967  LHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGK 1026

Query: 498  IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
               A  +  + L      P+ F Y   I     SG  +       +M   GC PN
Sbjct: 1027 AAEAAQMYEELL-RKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQMIVGGCQPN 1080


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 199/427 (46%), Gaps = 13/427 (3%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           M S G +     I+++M  + C+P+V  YT +I+    +      +RV +EM++  +  D
Sbjct: 430 MCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPD 489

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
              Y +LI+GL K  ++        EM ENG   D   YG  I G +  G+   A   +K
Sbjct: 490 TFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVK 549

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           ++++ G   +  +   +I   C+  +  +A   F   V+  +  D  T   L+    + G
Sbjct: 550 EMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNG 609

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSS-VPI 414
           ++++  ++  +M      +A D+  +   + G  K   +  A  +F+E+   G +S V I
Sbjct: 610 KVNDAEEIFHEMRGK--GIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVII 667

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YN+L+G     GE++KA  L  +M G     N++++   I  + +SGD+ EA +  +++ 
Sbjct: 668 YNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMK 727

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
               VP    Y  L  G C++ +++ A+ +        AS    F   +    V + G+ 
Sbjct: 728 LKGLVPDSFVYTTLVDGCCRLNDVERAITIFETNEKGCASSSAPFNALIN--WVFKFGKT 785

Query: 535 EKIIEVLNEMTQEGCP----PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           E   +++N +          PN+V  + +I  +CK G LE A+++F ++++  L+     
Sbjct: 786 ELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLM--PTV 843

Query: 591 IVYDEIL 597
           I Y  +L
Sbjct: 844 ITYTSLL 850



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 178/401 (44%), Gaps = 2/401 (0%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           +M  +G + +   + + M      P   AY ++I     E+N+     +  E+KK  +  
Sbjct: 359 VMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVI 418

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
               Y T + G+C  G +   + + +EM  +G   +  IY  LI+  + + + G A  +L
Sbjct: 419 SPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVL 478

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
           K++ + G   D   YNS+I GL + K+ D+A       V++   PD  T    +    E 
Sbjct: 479 KEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEA 538

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIY 415
           G   +  K + +M +        L         K+ +++ A   F  +  +G       Y
Sbjct: 539 GEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTY 598

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
            +LM  L++ G+V  A  +F +MRG  +  +  S+   I    + G++ +A    +++++
Sbjct: 599 TVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQ 658

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
                +V  YN L  G C+ GEI+ A  L+ +  G     P    Y   I   C+SG+  
Sbjct: 659 AGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGK-GFPPNAVTYCTIIDGYCKSGDLA 717

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           +  ++ +EM  +G  P+  + + ++ G C+   +E A  +F
Sbjct: 718 EAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF 758



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 214/477 (44%), Gaps = 34/477 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           + G+K +  +Y A          F +AD+          + EMLE      + LC   + 
Sbjct: 518 ENGFKPDAFTYGAFISGYIEAGEFASADKY---------VKEMLECGVIPNKVLCTGLIN 568

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y    +V+      +AC   +  M +  +  D   Y  L+ GL K G+V    E+F EM
Sbjct: 569 EYCKKGKVI------EAC-SAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEM 621

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           +  GI  D   YG LI+G    G + KA  +  ++V +G  +++ IYN ++GG CR  + 
Sbjct: 622 RGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEI 681

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           +KA +L +        P+  T   ++    + G +   F+L  +M KLK  +  D   + 
Sbjct: 682 EKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEM-KLK-GLVPDSFVYT 739

Query: 385 EFLVG--KEERIMMALDVFE-ELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
             + G  +   +  A+ +FE   KG   SS P +N L+  + + G+ +    +  ++   
Sbjct: 740 TLVDGCCRLNDVERAITIFETNEKGCASSSAP-FNALINWVFKFGKTELTTDMINRLMDG 798

Query: 442 NLEV----NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           + +     N ++++I I    + G++  A E  + + + + +P+V  Y  L  G  K+G 
Sbjct: 799 SFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGR 858

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM-----TQEGCPPN 552
             + M  V D +      P    Y++ I    + G   K + +L++M       +GC  +
Sbjct: 859 -RSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLS 917

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV--YDEILIEHMKKKTAD 607
              C A++SG  K G +E A KV  N+   K + +++T++   +E  I   ++  AD
Sbjct: 918 ISTCRALLSGFAKVGEMEVAEKVVENMVRLKYIPDSSTVIELINESCISSNQRMAAD 974



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 105/445 (23%), Positives = 175/445 (39%), Gaps = 39/445 (8%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q R+ +   +L +M       D  AY+ +I  L   RN DA   +  EM       D M 
Sbjct: 293 QKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMM 352

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y   I  + K G + +   LF  M   G+      Y  LIEG   E  V K  +LL ++ 
Sbjct: 353 YDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIK 412

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                     Y + + G+C     D AY + +        P+      L+    +  R  
Sbjct: 413 KRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFG 472

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
           +  ++L +M +    +A D   +   ++G  K +++  A     E+   G+      Y  
Sbjct: 473 DAVRVLKEMREQ--GIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGA 530

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
            +   +E GE   A     +M    +  N +  +  I  + + G ++EAC     ++E  
Sbjct: 531 FISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQG 590

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC---------------------LGNVASGP 516
            +     Y  L  GL K G+++ A  +  +                      LGN+    
Sbjct: 591 ILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKAS 650

Query: 517 TEFK-------------YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           + F              Y + +   CRSGE EK  E+L+EM+ +G PPN V    II G 
Sbjct: 651 SIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGY 710

Query: 564 CKHGTLEEARKVFTNLRERKLLTEA 588
           CK G L EA ++F  ++ + L+ ++
Sbjct: 711 CKSGDLAEAFQLFDEMKLKGLVPDS 735



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 154/378 (40%), Gaps = 37/378 (9%)

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
            A  N+D  L + + M    +     +Y  LI GLCK  R+     L  EM   G+  D 
Sbjct: 256 TATLNVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADN 315

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             Y +LI+GL+       A  L+ ++V  G+  D  +Y+  I  + +    +KA  LF+ 
Sbjct: 316 VAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDG 375

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER 393
            +   + P       L+         + FF+     EK       ++ K +E LV     
Sbjct: 376 MITFGVTPGARAYASLI---------EGFFR-----EK-------NVRKGYELLV----- 409

Query: 394 IMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
                    E+K +     P  Y   +  +   G++  A  +  +M       N + ++ 
Sbjct: 410 ---------EIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTT 460

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
            I+  ++     +A     ++ E    P    YN L  GL K  ++D A   + + + N 
Sbjct: 461 LIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVEN- 519

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              P  F Y   I     +GE     + + EM + G  PN+V+C+ +I+  CK G + EA
Sbjct: 520 GFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEA 579

Query: 573 RKVFTNLRERKLLTEANT 590
              F ++ E+ +L +A T
Sbjct: 580 CSAFRSMVEQGILGDAKT 597



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 110/526 (20%), Positives = 213/526 (40%), Gaps = 75/526 (14%)

Query: 99  NQFQWGPQVVTELSKLRRVTPDLVAEVLKVE--NNPTLASKFFHWAGKQKGYKHNFASYN 156
           NQ  W   +V+    +  + P++V  VL+ +  ++P+    FF+    QK  +    S++
Sbjct: 43  NQGNWRETLVSSNLSIE-INPEVVLSVLRSKRVDDPSKLLSFFNLVDSQKVTEQKLDSFS 101

Query: 157 ALAYCLSR-NNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
            LA  L    ++ +A   V  +++ +  +AE+                  +++++R    
Sbjct: 102 FLALDLCNFGSIEKAHSVVIRMIERKWPVAEV------------------WSSIVR---- 139

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI--DR 273
                 CLR +     D     V+ +  LI G  + G +     +F   K+  + +    
Sbjct: 140 ------CLREFVGKSDD----RVLLFGILIDGYIEKGFLDEAVFVFSSTKDLDLDLVPSL 189

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR------------- 320
           A    L++ L+   ++    D+ K +V+     D+  Y  +IG  CR             
Sbjct: 190 ARCNHLLDALLKRNRLDLFWDVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLK 249

Query: 321 --------VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
                       D+A +L +      L P   + N L+    +  R+++   LL +M  +
Sbjct: 250 TEEELGTATLNVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSV 309

Query: 373 KFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVK 429
              + AD   +   + G  K      A  +  E+   G+S  P +Y+  +  + + G ++
Sbjct: 310 --GLFADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAME 367

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
           KA  LF  M    +   + +++  I+      ++ +  E   +I + + V S   Y    
Sbjct: 368 KAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAV 427

Query: 490 KGLCKIGEIDAAMMLVRD-----CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           KG+C  G++D A  +V++     C  NV    T  K   T L   R G+A   + VL EM
Sbjct: 428 KGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIK---TFLQKSRFGDA---VRVLKEM 481

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            ++G  P+    +++I G+ K   ++EAR     + E     +A T
Sbjct: 482 REQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFT 527


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 178/401 (44%), Gaps = 37/401 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+G++   L++L ++  + C+P V  YT +I     E  +D  L++ +EM    ++ D+ 
Sbjct: 205 SRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMF 264

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I G+CK G V R  E+ R ++  G   D   Y +L+  L+ +GK  +   L+  +
Sbjct: 265 TYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKM 324

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
                  ++  Y+ +I  LCR  + ++A  L ++  +  L PD  + +PL+      GR+
Sbjct: 325 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 384

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNIL 418
           D                                   +A++  E +   G    +  YN +
Sbjct: 385 D-----------------------------------VAIEFLETMISDGCLPDIVNYNTV 409

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L + G+  +AL +FGK+  +    NS S++        SGD + A     +++    
Sbjct: 410 LATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGI 469

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P    YN +   LC+ G +D A  L+ D + +    P+   Y + +L  C++   E  I
Sbjct: 470 DPDEITYNSMISCLCREGMVDEAFELLVD-MRSCEFHPSVVTYNIVLLGFCKAHRIEDAI 528

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            VL  M   GC PNE   + +I G+   G   EA ++  +L
Sbjct: 529 NVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL 569



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 183/416 (43%), Gaps = 41/416 (9%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           +   ++EILEK      +PDVFAY A+I        +D   RV + M+      D + Y 
Sbjct: 142 KAVRVMEILEK----FGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYN 197

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            +I  LC  G++    ++  ++  +        Y +LIE  + EG V +A  L+ +++  
Sbjct: 198 IMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSR 257

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + D+  YN+II G+C+    D+A+++          PD  + N LL      G+ +  
Sbjct: 258 GLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEG 317

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422
            KL+ +M    FS   D                               +V  Y+IL+  L
Sbjct: 318 EKLMTKM----FSEKCD------------------------------PNVVTYSILITTL 343

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
              G++++A+ L   M+   L  ++ S+   I      G +  A E    +I    +P +
Sbjct: 344 CRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDI 403

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             YN +   LCK G+ D A+ +    LG V   P    Y      +  SG+  + + ++ 
Sbjct: 404 VNYNTVLATLCKNGKADQALEIFGK-LGEVGCSPNSSSYNTMFSALWSSGDKIRALHMIL 462

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           EM   G  P+E+  +++IS +C+ G ++EA ++  ++R  +     + + Y+ +L+
Sbjct: 463 EMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEF--HPSVVTYNIVLL 516



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 148/334 (44%), Gaps = 3/334 (0%)

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C+ G  +    L   M   G   D  +   LI+G      + KA  +++ L   G + D+
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDV 158

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             YN++I G C++ + D A ++ +     D +PD  T N ++      G++D   K+L Q
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGE 427
           +                     E  +  AL + +E+  +G    +  YN ++  + + G 
Sbjct: 219 LLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGM 278

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           V +A  +   +     E + +S++I ++  +  G   E  +   K+      P+V  Y+ 
Sbjct: 279 VDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSI 338

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L   LC+ G+I+ AM L++  +      P  + Y   I   CR G  +  IE L  M  +
Sbjct: 339 LITTLCRDGKIEEAMNLLK-LMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 397

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           GC P+ V  + +++ +CK+G  ++A ++F  L E
Sbjct: 398 GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGE 431



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 150/328 (45%), Gaps = 38/328 (11%)

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
           G   ++  LL+ +V  GY  D+ +   +I G   ++   KA ++ E+ ++    PD    
Sbjct: 103 GNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEI-LEKFGQPDVFAY 161

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKG 406
           N L+    +M R+D+  ++L +M    FS                               
Sbjct: 162 NALINGFCKMNRIDDATRVLDRMRSKDFS------------------------------- 190

Query: 407 KGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
                   YNI++G+L   G++  AL +  ++   N +   ++++I I+  +  G + EA
Sbjct: 191 ---PDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEA 247

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
            +  ++++     P +  YN + +G+CK G +D A  +VR+ L    S P    Y + + 
Sbjct: 248 LKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRN-LELKGSEPDVISYNILLR 306

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
            +   G+ E+  +++ +M  E C PN V  S +I+ +C+ G +EEA  +   ++E+ L  
Sbjct: 307 ALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTP 366

Query: 587 EANTIVYDEILIEHMKKKTADLVLSGLK 614
           +A +  YD ++    ++   D+ +  L+
Sbjct: 367 DAYS--YDPLIAAFCREGRLDVAIEFLE 392



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 137/306 (44%), Gaps = 7/306 (2%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           M  +G +    E++  +     +PDV +Y  ++R L  +   +   ++  +M  +  + +
Sbjct: 273 MCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 332

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ Y  LI  LC+ G++     L + MKE G+  D   Y  LI     EG++  A + L+
Sbjct: 333 VVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLE 392

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            ++  G   D+  YN+++  LC+  + D+A ++F    +   +P+ S+ N +       G
Sbjct: 393 TMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSG 452

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL----KGKGYSSVP 413
             D    L   +E +   +  D E  +  ++    R  M  + FE L      + + SV 
Sbjct: 453 --DKIRALHMILEMMSNGIDPD-EITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVV 509

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YNI++    +   ++ A+ +   M G     N  ++++ I+    +G   EA E  N +
Sbjct: 510 TYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL 569

Query: 474 IEMSQV 479
           + +  +
Sbjct: 570 VRIDAI 575



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 19/220 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS-------------------QGRI 184
           K+KG   +  SY+ L     R      A +  E M S                    G+ 
Sbjct: 360 KEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKA 419

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            + LEI  K+    C P+  +Y  M   L +  +    L +  EM  + ++ D + Y ++
Sbjct: 420 DQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSM 479

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC+ G V    EL  +M+          Y +++ G     ++  A ++L+ +V +G 
Sbjct: 480 ISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGC 539

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
           R +   Y  +I G+       +A +L    V+ D   ++S
Sbjct: 540 RPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEYS 579


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 181/422 (42%), Gaps = 54/422 (12%)

Query: 144 KQKGYKHNFASYNALA--YCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           K++G++ +  +YN L   +C                   +GR+   L +++++ ++ CKP
Sbjct: 173 KKRGFEPDVVTYNILIGNFC------------------GRGRLDLALRVMDQLLKDNCKP 214

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
            V  YT +I     +  +D  +++ +EM    +  D   Y  ++ G+CK G + R  E  
Sbjct: 215 TVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFL 274

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             + +NG +   + Y +L+  L+ EGK      L+ D++  G   +   Y+++I  LCR 
Sbjct: 275 SRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRD 334

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            + D+A  + +V  +  LAPD  + +PL+      G++D   + L  M            
Sbjct: 335 GKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDM------------ 382

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
                                 + G     +  YN ++ +L + G   +AL +F K+  +
Sbjct: 383 ----------------------ISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEV 420

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
               N+ S++        SGD + A     +++     P    YN L   LC+ G +D A
Sbjct: 421 GCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQA 480

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           + L+ D   +    PT   Y   +L +C+       IEVL  M  EGC PNE   + +I 
Sbjct: 481 IELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQ 540

Query: 562 GM 563
           G+
Sbjct: 541 GI 542



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 184/399 (46%), Gaps = 19/399 (4%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           +++EILEK      KPDVFAY A+I        +D   +V + MKK   E DV+ Y  LI
Sbjct: 133 QVMEILEKHG----KPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILI 188

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              C  GR+     +  ++ ++        Y +LIE  + +G + +A  LL +++  G R
Sbjct: 189 GNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLR 248

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D   YN ++ G+C+    D+A++      ++      ST N LL      G+ +   KL
Sbjct: 249 PDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKL 308

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGK-----GYSSVPIYNIL 418
           ++ M  L      +   +   +    ++ +I  A +V + +K K     GYS    Y+ L
Sbjct: 309 MSDM--LVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYS----YDPL 362

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + AL   G+V  A+     M       + LS++  +    ++G+  EA     K+ E+  
Sbjct: 363 ISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGC 422

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P+  +YN L   L   G+   A+ ++ + L N    P E  Y   I  +CR G  ++ I
Sbjct: 423 PPNAGSYNTLFGALWSSGDKIRALGMILEMLSN-GIDPDEITYNSLISCLCRDGLVDQAI 481

Query: 539 EVLNEMTQ-EGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           E+L +M + E C P  +  + ++ G+CK   + +A +V 
Sbjct: 482 ELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVL 520



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 182/414 (43%), Gaps = 4/414 (0%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E L  L+ M     KPDV   T +I+     + ++  ++V E ++K   + DV AY  +I
Sbjct: 95  ESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKH-GKPDVFAYNAVI 153

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G CK  RV    ++   MK+ G   D   Y +LI    G G++  A  ++  L+    +
Sbjct: 154 SGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCK 213

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
             +  Y  +I         D+A KL +  +   L PD  T N ++    + G +D  F+ 
Sbjct: 214 PTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEF 273

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLE 424
           L+++ K                +  E +      +  ++  KG    PI Y+ L+ AL  
Sbjct: 274 LSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCR 333

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G++ +A  +   M+   L  +  S+   I      G +  A E  + +I    +P + +
Sbjct: 334 DGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILS 393

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN +   LCK G  D A+ +    LG V   P    Y      +  SG+  + + ++ EM
Sbjct: 394 YNSILASLCKNGNADEALNIFEK-LGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEM 452

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
              G  P+E+  +++IS +C+ G +++A ++  ++ E +   +   I Y+ +L+
Sbjct: 453 LSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESE-KCQPTVISYNTVLL 505



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 145/324 (44%), Gaps = 48/324 (14%)

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
            L+ +V+ GY+ D+ +   +I G   +K+ +KA ++ E+ ++    PD    N ++    
Sbjct: 99  FLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEI-LEKHGKPDVFAYNAVISGFC 157

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI 414
           +  R+D+  K+L +M+K  F                                     V  
Sbjct: 158 KADRVDHASKVLDRMKKRGFE----------------------------------PDVVT 183

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YNIL+G     G +  AL +  ++   N +   ++++I I+  +  G I EA +  ++++
Sbjct: 184 YNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEML 243

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV-----RDCLGNVASGPTEFKYALTILHVC 529
                P    YN +  G+CK G +D A   +       C+  V++      Y + +  + 
Sbjct: 244 SRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVST------YNILLRDLL 297

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
             G+ E   +++++M  +GC PN +  S +I+ +C+ G ++EA+ V   ++E+ L  +  
Sbjct: 298 NEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGY 357

Query: 590 TIVYDEILIEHMKKKTADLVLSGL 613
           +  YD ++    ++   DL +  L
Sbjct: 358 S--YDPLISALCREGKVDLAIEFL 379



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 8/140 (5%)

Query: 163 SRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
           S N LF A     + + + G I EML        N   PD   Y ++I  L  +  +D  
Sbjct: 428 SYNTLFGALWSSGDKIRALGMILEMLS-------NGIDPDEITYNSLISCLCRDGLVDQA 480

Query: 223 LRVWEEM-KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
           + +  +M + +  +  V++Y T+++GLCK  R++   E+   M   G L +   Y +LI+
Sbjct: 481 IELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQ 540

Query: 282 GLVGEGKVGKACDLLKDLVD 301
           G+   G    A +L   LV+
Sbjct: 541 GIGFAGWRYDAMELANLLVN 560


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 143/621 (23%), Positives = 259/621 (41%), Gaps = 90/621 (14%)

Query: 23  QNRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQ 82
           QN  +V G L          N +S+PH S  F V                P+  + FQ  
Sbjct: 14  QNHSSVLGFL----------NFSSKPHISSHFAV----------------PASREPFQ-- 45

Query: 83  RHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDL----VAEVLKVENNPTLASKF 138
              + ++R      R    QW        S+L++++P L    VAE++ V  +     +F
Sbjct: 46  ---AIVSRVCAILSR---VQWKGS-----SELKQLSPQLKAHHVAEIVAVHKDTESVIQF 94

Query: 139 FHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM-------DSQGRIAEMLEIL 191
           F+W  K+  YKHN   + ++   L R+ +F  AD +  LM       +   R+A+ L  +
Sbjct: 95  FYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEI 154

Query: 192 EKM------------------------RRNLCK--------PDVFAYTAMIRVLAAERNL 219
             M                         RNL K        P +  +  +I +L+ +  +
Sbjct: 155 SGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKV 214

Query: 220 DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL 279
                +  ++ +  +  DV  Y +LI+G C+   +     +F  M + G   +   Y  L
Sbjct: 215 REAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 274

Query: 280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339
           I GL  EG+V +A D+L+++++ G    +  Y   I  LC ++  ++A +L     +   
Sbjct: 275 INGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGC 334

Query: 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKLKFSVAADLEKFFEFLVGKEERIMMA 397
            P+  T   L+   + +G+++    L  +M  E L  +         E  VG   R   A
Sbjct: 335 RPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGG--RFSTA 392

Query: 398 LDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
           L +F  ++G G  ++   YN ++  L   G+++KA+ LF KM  +      ++++  I  
Sbjct: 393 LKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLING 452

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
           ++  G++  A    + + E    P    YN L  G  K G++++A    ++ +      P
Sbjct: 453 YLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMV-ECGLNP 511

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
               Y   I    + G+ +  + +L  M + GC PN    +A+I+G+ K     EA K+ 
Sbjct: 512 NPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKIC 571

Query: 577 TNLRERKLLTEANTIVYDEIL 597
             + E+ LL   N I Y  ++
Sbjct: 572 DKMVEQGLL--PNVITYTTLI 590



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 202/437 (46%), Gaps = 14/437 (3%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           ++  +G++ E   IL ++ +    PDVF YT++I      RNLD    V++ M K+  + 
Sbjct: 207 ILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDP 266

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           + + Y TLI GLC  GRV    ++  EM E GI      Y + I  L       +A +L+
Sbjct: 267 NSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELV 326

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             +   G R ++  Y ++I GL R+ + + A  L+   +++ L P+  T N L+      
Sbjct: 327 ARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVG 386

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVP 413
           GR     K+   ME       A+ + + E + G      I  A+ +FE++   G   +V 
Sbjct: 387 GRFSTALKIFHWME--GHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVV 444

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN L+   L  G V  A  L   M+    E +  +++  +    + G +  A     ++
Sbjct: 445 TYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM 504

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC---R 530
           +E    P+  +Y  L  G  K G++D A+ L++  +  +   P    Y   I  +    R
Sbjct: 505 VECGLNPNPVSYTALIDGHSKDGKVDIALSLLKR-MEEMGCNPNVESYNAVINGLSKENR 563

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             EAEKI +   +M ++G  PN +  + +I G+C++G  + A K+F ++ +RK L   N 
Sbjct: 564 FSEAEKICD---KMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCL--PNL 618

Query: 591 IVYDEILIEHMKKKTAD 607
             Y  ++    ++  AD
Sbjct: 619 YTYSSLIYGLCQEGKAD 635



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 121/481 (25%), Positives = 215/481 (44%), Gaps = 30/481 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K++G + N  +Y AL   LSR                 G++   + +  KM +    P+ 
Sbjct: 330 KKRGCRPNVQTYTALISGLSR----------------LGKLEVAIGLYHKMLKEGLVPNT 373

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y A+I  L         L+++  M+     A+   Y  +I GLC GG + +   LF +
Sbjct: 374 VTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEK 433

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M + G L     Y  LI G + +G V  A  LL  + ++G   D   YN ++ G  +  +
Sbjct: 434 MLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGK 493

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            + A   F+  V+  L P+  +   L+   ++ G++D    LL +ME++      ++E +
Sbjct: 494 LESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEM--GCNPNVESY 551

Query: 384 FEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
              + G  KE R   A  + +++  +G   +V  Y  L+  L   G  + A  +F  M  
Sbjct: 552 NAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEK 611

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
                N  ++S  I    + G   EA     ++ E+   P++  Y+ L  GLC+ G    
Sbjct: 612 RKCLPNLYTYSSLIYGLCQEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYE 667

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A  LV+D          E  Y+L I H C++ E +  +++ + +  +G   +  I  A+I
Sbjct: 668 AEQLVKDMKERGFCPDREIYYSLLIAH-CKNLEVDHALKIFHSIEAKGFQLHLSIYRALI 726

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLES 620
             +CK G +EEA+ +F N+ E++    A+ IV+  ++   +K+   DL +  L    +ES
Sbjct: 727 CALCKAGQVEEAQALFDNMLEKEW--NADEIVWTVLVDGLLKEGELDLCMKLLHI--MES 782

Query: 621 K 621
           K
Sbjct: 783 K 783



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 108/478 (22%), Positives = 186/478 (38%), Gaps = 60/478 (12%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQV 174
           VT + +   L V    + A K FHW  +  G   N  +YN +    CL            
Sbjct: 374 VTYNALINELCVGGRFSTALKIFHWM-EGHGSLANTQTYNEIIKGLCLG----------- 421

Query: 175 PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
                  G I + + + EKM +    P V  Y  +I     + N++   R+ + MK++  
Sbjct: 422 -------GDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGC 474

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           E D   Y  L+ G  K G++      F+EM E G+  +   Y  LI+G   +GKV  A  
Sbjct: 475 EPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALS 534

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           LLK + + G   ++  YN++I GL +  +F +A K+ +  V+  L P+  T   L+    
Sbjct: 535 LLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLC 594

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI 414
             GR    FK+   ME                                  K K   ++  
Sbjct: 595 RNGRTQFAFKIFHDME----------------------------------KRKCLPNLYT 620

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y+ L+  L + G+  +A     +M  +  E    ++S  +      G   EA +    + 
Sbjct: 621 YSSLIYGLCQEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMK 676

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           E    P    Y  L    CK  E+D A+ +                 AL I  +C++G+ 
Sbjct: 677 ERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRAL-ICALCKAGQV 735

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           E+   + + M ++    +E++ + ++ G+ K G L+   K+   +  +       T V
Sbjct: 736 EEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYV 793


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 118/485 (24%), Positives = 213/485 (43%), Gaps = 56/485 (11%)

Query: 147  GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
            G  HN  +Y+ L  C  R +      Q+P            L +L KM +   +P++   
Sbjct: 725  GIPHNHYTYSILINCFCRRS------QLPL----------ALAVLGKMMKLGYEPNIVTL 768

Query: 207  TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
            ++++      + +   + + ++M     + + + + TLI GL    +      L   M  
Sbjct: 769  SSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVA 828

Query: 267  NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
             G   D   YGV++ GL   G    A +LL  +        + IYN+II GLC+ K  D 
Sbjct: 829  KGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDD 888

Query: 327  AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-------EKLKFSVAAD 379
            A  LF+      + P+  T + L+ C    GR  +  +LL+ M       +   FS   D
Sbjct: 889  ALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALID 948

Query: 380  ----------LEKFFEFLVGK------------------EERIMMALDVFEELKGKG-YS 410
                       EK ++ +V +                   +R+  A  +FE +  K  + 
Sbjct: 949  AFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFP 1008

Query: 411  SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
             V  YN L+    +   V++ + +F +M    L  N+++++I IQ   ++GD   A E  
Sbjct: 1009 DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIF 1068

Query: 471  NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
             +++     P++  YN L  GLCK G+++ A M+V + L      PT + Y + I  +C+
Sbjct: 1069 KEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA-MVVFEYLQRSKMEPTIYTYNIMIEGMCK 1127

Query: 531  SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA-- 588
            +G+ E   ++   ++ +G  P+ V  + +ISG C+ G+ EEA  +F  ++E   L  +  
Sbjct: 1128 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGC 1187

Query: 589  -NTIV 592
             NT++
Sbjct: 1188 YNTLI 1192



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 187/402 (46%), Gaps = 6/402 (1%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           + D++ +  +I        +   L +  +M K   E D +   +L+ G C+  RV     
Sbjct: 220 RNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 279

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L  +M E G   D   Y  +I+ L    +V  A D  K++   G R ++  Y +++ GLC
Sbjct: 280 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLC 339

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
              ++  A +L    ++  + P+  T + LL    + G++    +L  +M  ++ S+  D
Sbjct: 340 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM--VRMSIDPD 397

Query: 380 LEKFFEFLVGK--EERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFG 436
           +  +   + G    +RI  A  +F+ +  KG  + V  YN L+    +   V+  + LF 
Sbjct: 398 IVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 457

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M    L  N+++++  IQ   ++GD+ +A E  +++      P +  YN L  GLC  G
Sbjct: 458 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNG 517

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           E++ A+++  D +           Y   I  +C++G+ E+   +   ++ +G  P+ V  
Sbjct: 518 ELEKALVIFED-MQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTY 576

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           + ++SG+C  G L E   ++T +++  L+    T+   +I +
Sbjct: 577 TTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITL 618



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/448 (22%), Positives = 198/448 (44%), Gaps = 22/448 (4%)

Query: 147  GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
            GY+ N  ++N L + L  +N                + +E + ++++M    C+PD+  Y
Sbjct: 795  GYQPNTVTFNTLIHGLFLHN----------------KASEAMALIDRMVAKGCQPDLVTY 838

Query: 207  TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
              ++  L    + D    +  +M++  +E  V+ Y T+I GLCK   +     LF+EM+ 
Sbjct: 839  GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 898

Query: 267  NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
             GI  +   Y  LI  L   G+   A  LL D+++     D+  ++++I    +  +  +
Sbjct: 899  KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 958

Query: 327  AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
            A KL++  V+  + P   T + L+       R+D   ++   M  +      D+  +   
Sbjct: 959  AEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM--VSKHCFPDVVTYNTL 1016

Query: 387  LVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
            + G  K +R+   ++VF E+  +G   +   YNIL+  L + G+   A  +F +M    +
Sbjct: 1017 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 1076

Query: 444  EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
              N ++++  +    ++G + +A      +      P++  YN + +G+CK G+++    
Sbjct: 1077 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 1136

Query: 504  LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
            L  + L      P    Y   I   CR G  E+   +  EM ++G  PN    + +I   
Sbjct: 1137 LFCN-LSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRAR 1195

Query: 564  CKHGTLEEARKVFTNLRERKLLTEANTI 591
             + G  E + ++   +R      +A+TI
Sbjct: 1196 LRDGDREASAELIKEMRSCGFAGDASTI 1223



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 162/322 (50%), Gaps = 11/322 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + R+++ + +++KM     KPD+ AY A+I  L   + ++     ++E+++  +  +V+ 
Sbjct: 271 RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVT 330

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ GLC   R      L  +M +  I  +   Y  L++  V  GKV +A +L +++V
Sbjct: 331 YTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV 390

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 D+  Y+S+I GLC   + D+A ++F++ V      D  + N L+    +  R++
Sbjct: 391 RMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVE 450

Query: 361 NFFKLLAQMEK---LKFSVAAD--LEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPI 414
           +  KL  +M +   +  +V  +  ++ FF+   G  ++   A + F ++   G S  +  
Sbjct: 451 DGMKLFREMSQRGLVSNTVTYNTLIQGFFQ--AGDVDK---AQEFFSQMDFFGISPDIWT 505

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YNIL+G L + GE++KAL +F  M+   ++++ ++++  I+   ++G + EA      + 
Sbjct: 506 YNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLS 565

Query: 475 EMSQVPSVAAYNCLTKGLCKIG 496
                P +  Y  +  GLC  G
Sbjct: 566 LKGLKPDIVTYTTMMSGLCTKG 587



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 124/545 (22%), Positives = 230/545 (42%), Gaps = 92/545 (16%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------------PELMDS---QGRI 184
           ++KG + N  +Y AL   L  ++ +  A ++                  L+D+    G++
Sbjct: 320 ERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKV 379

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  E+ E+M R    PD+  Y+++I  L     +D   ++++ M      ADV++Y TL
Sbjct: 380 LEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 439

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK  RV  G +LFREM + G++ +   Y  LI+G    G V KA +    +   G 
Sbjct: 440 INGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI 499

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  YN ++GGLC   + +KA  +FE   + ++  D  T   ++    + G+++  + 
Sbjct: 500 SPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWS 559

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG-----------------KEERIM------------ 395
           L   +  LK  +  D+  +   + G                 K+E +M            
Sbjct: 560 LFCSLS-LK-GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDIT 617

Query: 396 MALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN-------LEVNSL 448
           ++ ++ +++   GY+   + +I      + G  KKAL L     G         L  N L
Sbjct: 618 LSAELIKKMLSCGYAPSLLKDI------KSGVCKKALSLLRAFSGKTSYDYREKLSRNGL 671

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           S             + +A     ++++    PS+  ++ L   + K+ + D  + L    
Sbjct: 672 S----------ELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQ- 720

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
           + N+      + Y++ I   CR  +    + VL +M + G  PN V  S++++G C    
Sbjct: 721 MQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKR 780

Query: 569 LEEARKVFTNLRERKLLT--EANTIVYDEI---LIEHMKKKTADLVLSGLKFFGLESKLK 623
           + EA      L ++  +T  + NT+ ++ +   L  H K   A           L  ++ 
Sbjct: 781 ISEA----VALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEA---------MALIDRMV 827

Query: 624 AKGCK 628
           AKGC+
Sbjct: 828 AKGCQ 832



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/477 (22%), Positives = 204/477 (42%), Gaps = 50/477 (10%)

Query: 162  LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221
            LSRN L            S+ ++ + + +  +M ++   P +  ++ ++  +A     D 
Sbjct: 666  LSRNGL------------SELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDV 713

Query: 222  CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
             + + E+M+   +  +   Y  LI   C+  ++     +  +M + G   +      L+ 
Sbjct: 714  VISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLN 773

Query: 282  GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
            G     ++ +A  L+  +  +GY+ +   +N++I GL    +  +A  L +  V     P
Sbjct: 774  GYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQP 833

Query: 342  DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVF 401
            D  T   ++    + G  D  F LL +ME+ K      +       + K + +  AL++F
Sbjct: 834  DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLF 893

Query: 402  EELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
            +E++ KG   +V  Y+ L+  L   G    A  L   M    +  +  +FS  I   V+ 
Sbjct: 894  KEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKE 953

Query: 461  GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVASG 515
            G ++EA + ++++++ S  PS+  Y+ L  G C    +D A      M+ + C  +V + 
Sbjct: 954  GKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTY 1013

Query: 516  PTEFK-----------------------------YALTILHVCRSGEAEKIIEVLNEMTQ 546
             T  K                             Y + I  + ++G+ +   E+  EM  
Sbjct: 1014 NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS 1073

Query: 547  EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
            +G PPN +  + ++ G+CK+G LE+A  VF  L+  K+     TI    I+IE M K
Sbjct: 1074 DGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM---EPTIYTYNIMIEGMCK 1127



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 155/324 (47%), Gaps = 36/324 (11%)

Query: 144  KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------------PELMDS---QGRI 184
            + KG + N  +Y++L  CL     +  A ++                  L+D+   +G++
Sbjct: 897  ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 956

Query: 185  AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
             E  ++ ++M +    P +  Y+++I        LD   +++E M       DV+ Y TL
Sbjct: 957  VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 1016

Query: 245  IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
            I G CK  RV  G E+FREM + G++ +   Y +LI+GL   G    A ++ K++V  G 
Sbjct: 1017 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 1076

Query: 305  RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
              ++  YN+++ GLC+  + +KA  +FE   +  + P   T N ++    + G++++ + 
Sbjct: 1077 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 1136

Query: 365  LLAQMEKLKFSVAADLEKFFEFLVG------KEERIMMALDVFEELKGKGYSSVP---IY 415
            L   +  LK  V  D+  +   + G      KEE    A  +F+E+K  G  ++P    Y
Sbjct: 1137 LFCNLS-LK-GVKPDVVAYNTMISGFCRKGSKEE----ADALFKEMKEDG--TLPNSGCY 1188

Query: 416  NILMGALLEIGEVKKALYLFGKMR 439
            N L+ A L  G+ + +  L  +MR
Sbjct: 1189 NTLIRARLRDGDREASAELIKEMR 1212


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 216/489 (44%), Gaps = 40/489 (8%)

Query: 122 VAEVLKVENNPTLASKFF-H-WAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD 179
           V  V+  E + + A KF+ H +    KG++ N  +YN +   L +               
Sbjct: 166 VLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCK--------------- 210

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
             G+I   ++   +M    C PDVF Y+ ++  L  ER +D  + + +EM+ +    + +
Sbjct: 211 -LGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPV 269

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            +  LI  L K G + R  +L   M   G + +   Y  LI GL  +GK+ KA  LL+ +
Sbjct: 270 TFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKM 329

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V S    +   Y +II GL + ++ +    +     +     +    + L+    + G+ 
Sbjct: 330 VSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKS 389

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYN 416
           +N  +L  +M +       ++  +  F+ G  ++E+   A D+ +E+  KG+  +   Y+
Sbjct: 390 ENAVRLWKEMAEK--GCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYS 447

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            LM    + G+ +KA+ ++ +M   ++  N +  S+ +    ESG + EA      ++  
Sbjct: 448 SLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGE 507

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAE 535
              P V AY+ + KGLC +G +D  + L  +       S P    Y +    +CR     
Sbjct: 508 GLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLT 567

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           + I++LN M  EGC P+ + C+  +                  LRER    +   +  DE
Sbjct: 568 RAIDLLNSMLDEGCDPDSLTCNIFLE----------------TLRERINPPQDGRLFLDE 611

Query: 596 ILIEHMKKK 604
           +++  +K++
Sbjct: 612 LVVRLLKRE 620



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 128/598 (21%), Positives = 232/598 (38%), Gaps = 91/598 (15%)

Query: 33  FSNRQSLRNPNSASEP---HQSPPFNVQKWDP---------HYLPNQKTQSPPS------ 74
           FS+   LRNP         HQ  P  +    P           LP     +P +      
Sbjct: 12  FSDSALLRNPFDPMPKFSIHQLNPLTISLHKPARLSPFFYFSSLPLSSNSTPDAQNELSI 71

Query: 75  DPKTFQLQRHL-------SPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPD----LVA 123
            P+ F+ +          +   R I +     +F +  QV+  + +  RV  +    L+ 
Sbjct: 72  SPQIFKSRPQFGSYKLGDATFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIF 131

Query: 124 EVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR 183
           +     + P  A  FFH        K    S+N++   + +   F  A +          
Sbjct: 132 KACGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKF--------- 182

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
               L +     +   +P++  Y  +I+ L     +D  +  + EM       DV  Y T
Sbjct: 183 ---YLHVFGANSKGF-QPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYST 238

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+ GLCK  RV     L  EM+  G L +   + VLI+ L   G + +A  L+ ++   G
Sbjct: 239 LMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKG 298

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
              +   YN++I GLC   + DKA  L E  V     P+  T   ++    +  R ++  
Sbjct: 299 CVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGV 358

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALL 423
            +L  ME+                                 +G+  +   IY+ L+  L 
Sbjct: 359 HILMSMEE---------------------------------RGQKANEY-IYSSLISGLF 384

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQVPS 481
           + G+ + A+ L+ +M     + N + +   I   C  E  D  EA +   +++    +P+
Sbjct: 385 KEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPD--EAEDILQEMLSKGFLPN 442

Query: 482 VAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              Y+ L KG  K G+   A+     M+ +D   NV         ++ +  +C SG   +
Sbjct: 443 AFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCC------SVLLNGLCESGRLRE 496

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
            + V   M  EG  P+ V  S++I G+C  G++++  K+F  ++ ++  +  + + Y+
Sbjct: 497 ALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYN 554



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 158/354 (44%), Gaps = 14/354 (3%)

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKV-GKACDLLKDLVDSGY-RADLGIYNSII 315
           H++   MK  G ++   I+ +LI    G+  + G+A +    + +  + +  +  +NS++
Sbjct: 109 HQVLDRMKREGRVLTETIF-ILIFKACGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVL 167

Query: 316 GGLCRVKQFDKAYKLFEVTVQDD---LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
             + +   F  A+K +      +     P+  T N ++    ++G++D       +M  L
Sbjct: 168 NVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREM-PL 226

Query: 373 KFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVK 429
           K +   D+  +   + G  KE R+  A+ + +E++ +G    P+ +N+L+ AL + G++ 
Sbjct: 227 K-NCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLS 285

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
           +A  L   M       N ++++  I      G + +A     K++    VP+   Y  + 
Sbjct: 286 RAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTII 345

Query: 490 KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
            GL K    +  + ++   +        E+ Y+  I  + + G++E  + +  EM ++GC
Sbjct: 346 NGLVKQRRAEDGVHILMS-MEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGC 404

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
            PN V+  A I G+C+    +EA  +   +  +  L   N   Y  ++    KK
Sbjct: 405 KPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFL--PNAFTYSSLMKGFFKK 456


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 125/527 (23%), Positives = 226/527 (42%), Gaps = 74/527 (14%)

Query: 119 PDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA------ 171
           P L+  VL  V N P +A +FF WA +Q G+K +  SY+ +   L+RN L R+A      
Sbjct: 47  PKLLVRVLNTVRNRPVVALRFFRWAERQTGFKRSEISYSVILDILARNGLMRSAYCVMEK 106

Query: 172 -----------DQVPELMDSQGRIAEMLEILE--KMRRNLCKPDVFAYTAMI-------- 210
                      D V     S   +  +L++L    ++++L +  +  +  M+        
Sbjct: 107 VVSVKMENGVIDVVSSSEVSMPSVKLILDLLLWIYVKKSLLEKCLLVFYKMVSKGLLPDV 166

Query: 211 ----RVLAAERNLDACLRVWEEMKKDLVEA----DVMAYVTLIMGLCKGGRVVRGHELFR 262
               RVL   R+ D  + V  E+   +VE      V+ Y T++   CK G V    +L  
Sbjct: 167 KNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLF 226

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           +M+  G   +   Y VL+ GL   G++ +A +L++D++  G    +  Y+ +I G C   
Sbjct: 227 QMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKG 286

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           Q ++A +L E  +     P   T N ++    + GR+                  +D  K
Sbjct: 287 QIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRV------------------SDARK 328

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
             + +V K        ++  +L          YN L+     +G + +A  LF ++R  +
Sbjct: 329 LLDVMVNK--------NLMPDLVS--------YNTLIYGYTRLGNIGEAFLLFAELRYRS 372

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           L  + ++++  I      GD+  A    +++I+    P V  +    +G CK+G +  A 
Sbjct: 373 LAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAK 432

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            L  + L N    P  F Y   I+   + G+  K   +  EM   G PP+ +  +  I G
Sbjct: 433 ELFDEML-NRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDG 491

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANT---IVYDEILIEHMKKKTA 606
           + K G L+EA ++   +    L+ +  T   I++  ++  H++K  A
Sbjct: 492 LHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARA 538



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 190/429 (44%), Gaps = 9/429 (2%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +   G + +  E+++ M R   +  V+ Y  +IR    +  ++   R+ EEM        
Sbjct: 247 LSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPT 306

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ Y T++ GLCK GRV    +L   M    ++ D   Y  LI G    G +G+A  L  
Sbjct: 307 VVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFA 366

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           +L        +  YN++I GLCR+   D A +L +  ++    PD  T    +    +MG
Sbjct: 367 ELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMG 426

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPI 414
            +    +L  +M  L   +  D   +   +VG  K      A  + EE+  +G+   +  
Sbjct: 427 NLPMAKELFDEM--LNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLIT 484

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YN+ +  L ++G +K+A  L  KM    L  + ++++  I  H+ +G + +A     +++
Sbjct: 485 YNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEML 544

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                PSV  Y  L       G +  A++   + +      P    Y   I  +C+  + 
Sbjct: 545 SKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFE-MHEKGVHPNVITYNALINGLCKVRKM 603

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           ++      EM  +G  PN+   + +I+  C  G  +EA +++ ++ +R++  ++ T    
Sbjct: 604 DQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCT---H 660

Query: 595 EILIEHMKK 603
             L++H+ K
Sbjct: 661 RSLLKHLNK 669



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 183/412 (44%), Gaps = 9/412 (2%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           ++DS   +G + E L++L +M+   C P+   Y  ++  L+    ++    + ++M +  
Sbjct: 208 MLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLG 267

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +E  V  Y  LI G C+ G++     L  EM   G +     Y  ++ GL   G+V  A 
Sbjct: 268 LEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDAR 327

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            LL  +V+     DL  YN++I G  R+    +A+ LF       LAP   T N L+   
Sbjct: 328 KLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGL 387

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSS 411
             +G +D   +L  +M  +K     D+  F  F+ G  K   + MA ++F+E+  +G   
Sbjct: 388 CRLGDLDVAMRLKDEM--IKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQP 445

Query: 412 VPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
               Y   +   L++G+  KA  +  +M       + +++++ I    + G++ EA E  
Sbjct: 446 DRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELV 505

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
            K++    VP    Y  +       G +  A  L  + L      P+   Y + I     
Sbjct: 506 KKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSK-GIFPSVVTYTVLIHSYAV 564

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
            G  +  I    EM ++G  PN +  +A+I+G+CK   +++A   F  ++ +
Sbjct: 565 RGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAK 616



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 160/371 (43%), Gaps = 31/371 (8%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           +  SYN L Y  +R                 G I E   +  ++R     P V  Y  +I
Sbjct: 341 DLVSYNTLIYGYTR----------------LGNIGEAFLLFAELRYRSLAPSVVTYNTLI 384

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
             L    +LD  +R+ +EM K   + DV  + T + G CK G +    ELF EM   G+ 
Sbjct: 385 DGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQ 444

Query: 271 IDRAIYGVLIEGLVGEGKVG---KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
            DR  Y   I  +VGE K+G   KA  + ++++  G+  DL  YN  I GL ++    +A
Sbjct: 445 PDRFAY---ITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEA 501

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-EKLKF-SVAADLEKFFE 385
            +L +  + + L PD  T   ++      G +     L  +M  K  F SV         
Sbjct: 502 SELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHS 561

Query: 386 FLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
           + V    R+ +A+  F E+  KG + +V  YN L+  L ++ ++ +A   F +M+   + 
Sbjct: 562 YAV--RGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGIS 619

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            N  +++I I  +   G   EA   +  +++    P    +  L K L K    D  + +
Sbjct: 620 PNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLKHLNK----DYKLHV 675

Query: 505 VRDCLGNVASG 515
           VR     +A+G
Sbjct: 676 VRHLENVIAAG 686


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 109/476 (22%), Positives = 212/476 (44%), Gaps = 24/476 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           ++ G   N  +YN L Y L ++     A +V + M   G                    +
Sbjct: 170 REAGMSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDV 229

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
             +L +L +M     KP+V++YT  IRVL      D   ++  +M+    + DV+ +  +
Sbjct: 230 DTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVV 289

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC  GR+    ++F +MK +    DR  Y  L++     G      ++   +V  GY
Sbjct: 290 IQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGY 349

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  Y +++  LC+V + D+A  +F+   +  ++P+  + N L+    +    D   +
Sbjct: 350 NDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALE 409

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
           L   M     S        F    GK  + + A+  +E +K KG    V   N ++ +L 
Sbjct: 410 LFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLA 469

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
             G +  A  +F +++ + +  +++++++ I+C  ++    EA    + ++E   VP V 
Sbjct: 470 RSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVL 529

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           A N L   L K G+ + A  L    L  +   PT   Y   +  + R G+ ++++ +L E
Sbjct: 530 ALNSLIDTLYKGGKGNEAWKLFHQ-LKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEE 588

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIVYDEI 596
           MT    PPN +  + ++  + K+G +  A  +  ++ E+     L+  NT++Y  I
Sbjct: 589 MTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLI 644



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 182/412 (44%), Gaps = 4/412 (0%)

Query: 170 AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
           AA+ V   +   GR+     +  +++     PD   YT MI+  +     D  +  + +M
Sbjct: 460 AANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDM 519

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
            +     DV+A  +LI  L KGG+     +LF ++KE  I      Y  L+ GL  EGKV
Sbjct: 520 VETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKV 579

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            +   LL+++  S +  +L  YN+++  L +  + + A  +     +    PD S+ N +
Sbjct: 580 KEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTV 639

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE--LKGK 407
           +    +  R +  F++  QM+K+     A L       V K   +  AL   +E  LK  
Sbjct: 640 MYGLIKEERFEEAFRMFCQMKKILAPDYATLCTILPSFV-KNGLMKEALHTVKEYILKAD 698

Query: 408 GYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
             +    ++ LM  +L    V+K++     +    + +N       I+   +    LEA 
Sbjct: 699 CNTDKSSFHSLMEGILNKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAH 758

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
           +  NK   +       +YN L +GL     ID A  L  + +  +  GP EF Y L +  
Sbjct: 759 QLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTE-MKRLGCGPDEFTYNLILDA 817

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           + +S   E+++ V  EM ++G     V  + IISG+ K   LE+A  ++ NL
Sbjct: 818 MGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNL 869



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 117/512 (22%), Positives = 209/512 (40%), Gaps = 55/512 (10%)

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ 181
           V  +L+    P  A + F  A +Q    H   S N   Y L             ELM + 
Sbjct: 78  VVHMLRSAPGPAEALELFTAAARQPTAVHTTESCN---YML-------------ELMRAH 121

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ +M ++ + M++ + K +V  +  +   +  +  L +       M++  +  +   Y
Sbjct: 122 GRVGDMAQVFDLMQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTY 181

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI  L K G      E+++ M E+GI      Y VL+     +  V     LL ++  
Sbjct: 182 NGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEA 241

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM-- 359
            G + ++  Y   I  L +  +FD+AY++          PD  T   ++    + GR+  
Sbjct: 242 RGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSD 301

Query: 360 --DNFFKLLAQMEKL----------KFSVAADLEKFFEFL-------------------- 387
             D F+K+ A  +K           K   + D +   E                      
Sbjct: 302 AKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVD 361

Query: 388 -VGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
            + +  R+  AL VF+E+K KG S     YN L+   L+     +AL LF  M       
Sbjct: 362 ALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSP 421

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N  +  + I  + +SG  L+A + +  +     VP VAA N +   L + G +  A  + 
Sbjct: 422 NGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVF 481

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
            + L ++   P    Y + I    ++ +A++ +   ++M + GC P+ +  +++I  + K
Sbjct: 482 YE-LKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYK 540

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            G   EA K+F  L+E K+  E     Y+ +L
Sbjct: 541 GGKGNEAWKLFHQLKEMKI--EPTNGTYNTLL 570



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 182/408 (44%), Gaps = 29/408 (7%)

Query: 144  KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
            K  G      SYN+L   L   NL   A+                ++  +M+R  C PD 
Sbjct: 765  KGLGVSLKTGSYNSLIRGLVDENLIDIAE----------------DLFTEMKRLGCGPDE 808

Query: 204  FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            F Y  ++  +     ++  LRV  EM +   E+  + Y T+I GL K  R+ +  +L+  
Sbjct: 809  FTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYN 868

Query: 264  MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
            +   G       YG L++GL+  GK+  A +L  ++++ G + +  IYN ++ G      
Sbjct: 869  LMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGN 928

Query: 324  FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
             +   ++FE  V+  + PD  +   L+      GR+++      Q+  L+  +  DL   
Sbjct: 929  TENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQL--LELGLEPDL-II 985

Query: 384  FEFLV---GKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
            +  L+   GK ERI  A+ +F E+K KG   ++  YN L+  L + G+  +A  ++ ++ 
Sbjct: 986  YNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELL 1045

Query: 440  GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
                + N  +++  I+ +  SG    A   ++ +     + +      + + L  I E  
Sbjct: 1046 IKGWKPNVFTYNALIRGYSVSGSTDNAYAAYDCVAVGVSLKTALISGLVDENLINIAEGL 1105

Query: 500  AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
             A M  R C      GP +F Y L +  + +S   E++++V  E+ ++
Sbjct: 1106 FAEMKRRGC------GPDQFTYNLILDAIGKSMRIEEMLKVQEEIAED 1147



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 185/443 (41%), Gaps = 24/443 (5%)

Query: 141  WAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCK 200
            ++  +KG   + +SYN + Y L +   F  A ++           +M +IL      LC 
Sbjct: 622  YSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRM---------FCQMKKILAPDYATLCT 672

Query: 201  --PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
              P  F    +++        +A   V E + K     D  ++ +L+ G+     V +  
Sbjct: 673  ILPS-FVKNGLMK--------EALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVEKSI 723

Query: 259  ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            E    +   GIL++      LI  L    K  +A  L       G     G YNS+I GL
Sbjct: 724  EFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGL 783

Query: 319  CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF-SVA 377
                  D A  LF    +    PD  T N +L    +  R++   ++ A+M +  + S  
Sbjct: 784  VDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTY 843

Query: 378  ADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKKALYLFG 436
                     LV K +R+  A+D++  L  +G+S  P  Y  L+  LL+ G++  A  LF 
Sbjct: 844  VTYNTIISGLV-KSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFN 902

Query: 437  KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            +M     + N   ++I +  H  +G+    C+   K++E    P + +Y  L   LC  G
Sbjct: 903  EMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAG 962

Query: 497  EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
             ++  +   R  L  +   P    Y L I  + +S   E+ + + NEM ++G  PN    
Sbjct: 963  RLNDGLSYFRQLL-ELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTY 1021

Query: 557  SAIISGMCKHGTLEEARKVFTNL 579
            +++I  + K G   EA +++  L
Sbjct: 1022 NSLILHLGKAGKASEAAQMYEEL 1044


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 209/447 (46%), Gaps = 43/447 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG + E + +L K+    C+ D+ +Y A+++ L   +       + +EM +     +++ 
Sbjct: 194 QGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVT 253

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + TLI  LC+ G   R HE+  +M E+G   D  +Y  +I+G+  EG +  A ++L  + 
Sbjct: 254 FNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMP 313

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + ++  YN+++ GLC  +++ +A +L     Q D   D  T N L+    + G +D
Sbjct: 314 SYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVD 373

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
              +LL QM                                  L       V  Y  ++ 
Sbjct: 374 RVIELLEQM----------------------------------LSHGCMPDVITYTTVIN 399

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G + +A+ L   M     + N++S++I ++    +G  ++A E  +++I+    P
Sbjct: 400 GFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPP 459

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +   +N L   LCK G ++ A+ L++  L N  S P    Y+  I  + ++G+ E+ +E+
Sbjct: 460 NPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCS-PDLISYSTVIDGLGKAGKTEEALEL 518

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           LN M  +G  PN +I S+I   + + G + +  ++F N+++  + ++A  ++Y+ ++   
Sbjct: 519 LNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDA--VLYNAVISSL 576

Query: 601 MKKKTADLVLSGLKFFGLESKLKAKGC 627
            K+   D     + FF   + + + GC
Sbjct: 577 CKRWETD---RAIDFF---AYMVSNGC 597



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 175/382 (45%), Gaps = 6/382 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+ + +  ++R L     +   L V +EM           Y  ++   C+ G       +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              M   G  +D     +++  +  +G V +A  LL+ L   G  AD+  YN+++ GLC 
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            K++    +L +  V+ D AP+  T N L+      G  +   ++LAQM   +     D+
Sbjct: 229 AKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS--EHGCTPDI 286

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             +   + G  KE  + +A ++   +   G   +V  YN ++  L      K+A  L  +
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M   +  ++ ++F+I +    ++G +    E   +++    +P V  Y  +  G CK G 
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGL 406

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           ID A+ML++  + +    P    Y + +  +C +G      E++++M Q+GCPPN V  +
Sbjct: 407 IDEAVMLLKS-MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFN 465

Query: 558 AIISGMCKHGTLEEARKVFTNL 579
            +I+ +CK G +E+A ++   +
Sbjct: 466 TLINFLCKKGLVEQAIELLKQM 487



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 92/190 (48%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S GR  +  E++ +M +  C P+   +  +I  L  +  ++  + + ++M  +    D++
Sbjct: 438 SAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLI 497

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y T+I GL K G+     EL   M   GI  +  IY  +   L  EG+V K   +  ++
Sbjct: 498 SYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNI 557

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D+  R+D  +YN++I  LC+  + D+A   F   V +   P+ ST   L+   A  G  
Sbjct: 558 KDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLA 617

Query: 360 DNFFKLLAQM 369
               +LL+++
Sbjct: 618 KEAQELLSEL 627



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/277 (20%), Positives = 121/277 (43%), Gaps = 1/277 (0%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S  R  E  E+L +M +  C  D   +  ++        +D  + + E+M       DV+
Sbjct: 333 SAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVI 392

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I G CK G +     L + M   G   +   Y ++++GL   G+   A +L+  +
Sbjct: 393 TYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQM 452

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G   +   +N++I  LC+    ++A +L +  + +  +PD  + + ++    + G+ 
Sbjct: 453 IQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKT 512

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNIL 418
           +   +LL  M     S    +       + +E R+   + +F+ +K     S   +YN +
Sbjct: 513 EEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAV 572

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           + +L +  E  +A+  F  M       N  ++++ I+
Sbjct: 573 ISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIK 609



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 124/295 (42%), Gaps = 56/295 (18%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           YN+++ G CR  Q                                           A+  
Sbjct: 82  YNAMVAGYCRAGQ----------------------------------------LAAARRL 101

Query: 371 KLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSV-PIYNILMGALLEIGE 427
                V  +   FF  + G     RI  AL+V +E+  KG + + P+Y++++ A    G 
Sbjct: 102 AAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGG 161

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
            + ++ +   M      +++ + ++ +    E G + EA     K+        + +YN 
Sbjct: 162 FRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNA 221

Query: 488 LTKGLC---KIGEIDAAM--MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
           + KGLC   + G+++  M  M+  DC  N+ +  T   Y      +CR+G  E++ EVL 
Sbjct: 222 VLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY------LCRNGLFERVHEVLA 275

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +M++ GC P+  + + II G+CK G LE A ++   +    L  + N + Y+ +L
Sbjct: 276 QMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGL--KPNVVCYNTVL 328



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 19/178 (10%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQV----------PELMD---------SQGRIA 185
           Q+G   N  ++N L   L +  L   A ++          P+L+            G+  
Sbjct: 454 QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE 513

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E LE+L  M      P+   Y+++   L+ E  ++  +++++ +K   + +D + Y  +I
Sbjct: 514 EALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVI 573

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
             LCK     R  + F  M  NG + + + Y +LI+GL  EG   +A +LL +L   G
Sbjct: 574 SSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 5/142 (3%)

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V AYN +  G C+ G++ AA  L       V   P  + +   +  +C  G     +EVL
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAA----AVPVPPNAYTFFPVVRGLCTRGRIADALEVL 134

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL-LTEANTIVYDEILIEH 600
           +EM+ +GC P   +   I+   C+ G    + +V   +  +   L   N  +    + E 
Sbjct: 135 DEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQ 194

Query: 601 MKKKTADLVLSGLKFFGLESKL 622
                A  +L  L FFG E+ +
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADI 216


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 209/447 (46%), Gaps = 43/447 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG + E + +L K+    C+ D+ +Y A+++ L   +       + +EM +     +++ 
Sbjct: 194 QGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVT 253

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + TLI  LC+ G   R HE+  +M E+G   D  +Y  +I+G+  EG +  A ++L  + 
Sbjct: 254 FNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMP 313

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + ++  YN+++ GLC  +++ +A +L     Q D   D  T N L+    + G +D
Sbjct: 314 SYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVD 373

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
              +LL QM                                  L       V  Y  ++ 
Sbjct: 374 RVIELLEQM----------------------------------LSHGCMPDVITYTTVIN 399

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G + +A+ L   M     + N++S++I ++    +G  ++A E  +++I+    P
Sbjct: 400 GFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPP 459

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +   +N L   LCK G ++ A+ L++  L N  S P    Y+  I  + ++G+ E+ +E+
Sbjct: 460 NPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCS-PDLISYSTVIDGLGKAGKTEEALEL 518

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           LN M  +G  PN +I S+I   + + G + +  ++F N+++  + ++A  ++Y+ ++   
Sbjct: 519 LNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDA--VLYNAVISSL 576

Query: 601 MKKKTADLVLSGLKFFGLESKLKAKGC 627
            K+   D     + FF   + + + GC
Sbjct: 577 CKRWETD---RAIDFF---AYMVSNGC 597



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 175/382 (45%), Gaps = 6/382 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+ + +  ++R L     +   L V +EM           Y  ++   C+ G       +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              M   G  +D     +++  +  +G V +A  LL+ L   G  AD+  YN+++ GLC 
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            K++    +L +  V+ D AP+  T N L+      G  +   ++LAQM   +     D+
Sbjct: 229 AKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS--EHGCTPDI 286

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             +   + G  KE  + +A ++   +   G   +V  YN ++  L      K+A  L  +
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M   +  ++ ++F+I +    ++G +    E   +++    +P V  Y  +  G CK G 
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGL 406

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           ID A+ML++  + +    P    Y + +  +C +G      E++++M Q+GCPPN V  +
Sbjct: 407 IDEAVMLLKS-MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFN 465

Query: 558 AIISGMCKHGTLEEARKVFTNL 579
            +I+ +CK G +E+A ++   +
Sbjct: 466 TLINFLCKKGLVEQAIELLKQM 487



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 92/190 (48%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S GR  +  E++ +M +  C P+   +  +I  L  +  ++  + + ++M  +    D++
Sbjct: 438 SAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLI 497

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y T+I GL K G+     EL   M   GI  +  IY  +   L  EG+V K   +  ++
Sbjct: 498 SYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNI 557

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D+  R+D  +YN++I  LC+  + D+A   F   V +   P+ ST   L+   A  G  
Sbjct: 558 KDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLA 617

Query: 360 DNFFKLLAQM 369
               +LL+++
Sbjct: 618 KEAQELLSEL 627



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/277 (20%), Positives = 121/277 (43%), Gaps = 1/277 (0%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S  R  E  E+L +M +  C  D   +  ++        +D  + + E+M       DV+
Sbjct: 333 SAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVI 392

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I G CK G +     L + M   G   +   Y ++++GL   G+   A +L+  +
Sbjct: 393 TYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQM 452

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G   +   +N++I  LC+    ++A +L +  + +  +PD  + + ++    + G+ 
Sbjct: 453 IQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKT 512

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNIL 418
           +   +LL  M     S    +       + +E R+   + +F+ +K     S   +YN +
Sbjct: 513 EEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAV 572

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           + +L +  E  +A+  F  M       N  ++++ I+
Sbjct: 573 ISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIK 609



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 124/295 (42%), Gaps = 56/295 (18%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           YN+++ G CR  Q                                           A+  
Sbjct: 82  YNAMVAGYCRAGQ----------------------------------------LAAARRL 101

Query: 371 KLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSV-PIYNILMGALLEIGE 427
                V  +   FF  + G     RI  AL+V +E+  KG + + P+Y++++ A    G 
Sbjct: 102 AAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGG 161

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
            + ++ +   M      +++ + ++ +    E G + EA     K+        + +YN 
Sbjct: 162 FRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNA 221

Query: 488 LTKGLC---KIGEIDAAM--MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
           + KGLC   + G+++  M  M+  DC  N+ +  T   Y      +CR+G  E++ EVL 
Sbjct: 222 VLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY------LCRNGLFERVHEVLA 275

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +M++ GC P+  + + II G+CK G LE A ++   +    L  + N + Y+ +L
Sbjct: 276 QMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGL--KPNVVCYNTVL 328



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 19/178 (10%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQV----------PELMD---------SQGRIA 185
           Q+G   N  ++N L   L +  L   A ++          P+L+            G+  
Sbjct: 454 QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE 513

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E LE+L  M      P+   Y+++   L+ E  ++  +++++ +K   + +D + Y  +I
Sbjct: 514 EALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVI 573

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
             LCK     R  + F  M  NG + + + Y +LI+GL  EG   +A +LL +L   G
Sbjct: 574 SSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 5/142 (3%)

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V AYN +  G C+ G++ AA  L       V   P  + +   +  +C  G     +EVL
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAA----AVPVPPNAYTFFPVVRGLCTRGRIADALEVL 134

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL-LTEANTIVYDEILIEH 600
           +EM+ +GC P   +   I+   C+ G    + +V   +  +   L   N  +    + E 
Sbjct: 135 DEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQ 194

Query: 601 MKKKTADLVLSGLKFFGLESKL 622
                A  +L  L FFG E+ +
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADI 216


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 128/548 (23%), Positives = 242/548 (44%), Gaps = 25/548 (4%)

Query: 70  QSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVE 129
            S  S P+   L      ++  +     +  +Q  P +   L  L   TP  V+ +    
Sbjct: 22  SSIASLPQILSLDSEPVDLSAQLLSILSRPNWQKHPSLRKLLPSL---TPSHVSSLFAFN 78

Query: 130 NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVP-ELMDSQGRIAEML 188
            +P  A  FF+W   + G+KHN  SY+++   L R  L   A+++   ++ S   I ++L
Sbjct: 79  LDPQTALSFFNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCSIEDVL 138

Query: 189 EILEKMRRNLC------KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
            +LE  R+         KP +  Y  ++  L+    +D    V+ E+  + +  ++  + 
Sbjct: 139 FVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFN 198

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++ G CK G VV       ++ + G+  D   Y  LI G      V  A ++   +   
Sbjct: 199 AMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQK 258

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + +   Y ++I GLC   + ++A KLF    +D+  P   T   L+   +  GR    
Sbjct: 259 GCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEA 318

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILM 419
             L  +M+  +     ++  +   + G  KE ++  A  +  E+  KG   SV  YN L+
Sbjct: 319 LNLFNEMK--EKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALI 376

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               + G +  A  +   M   +   N+ +++  I    +   + +A    NK++E    
Sbjct: 377 DGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLS 436

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           PS+  YN L  G CK+ ++++A  L+   +      P ++ Y++ I  +C+ G  E+   
Sbjct: 437 PSLITYNSLIHGQCKVNDLESAYRLL-SLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGT 495

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIVYDEI 596
           + + +  +G   NEVI +A+I G CK G ++ A  +       ++L +A   N+  Y+ +
Sbjct: 496 LFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLL-----ERMLNDACLPNSYTYN-V 549

Query: 597 LIEHMKKK 604
           LIE + K+
Sbjct: 550 LIEGLCKE 557



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 190/429 (44%), Gaps = 18/429 (4%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           QKG + N  SY  L + L                   GRI E L++   M  + C P V 
Sbjct: 257 QKGCQRNEVSYTNLIHGLCE----------------AGRINEALKLFADMTEDNCCPTVR 300

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            YT +I  L+        L ++ EMK+   E +V  Y  LI GLCK  ++    ++  EM
Sbjct: 301 TYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEM 360

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            E G++     Y  LI+G   EG +  A ++L  +  +    +   YN +I GLC+ ++ 
Sbjct: 361 SEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKV 420

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            KA  L    ++  L+P   T N L+    ++  +++ ++LL+ M +            F
Sbjct: 421 HKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVF 480

Query: 385 EFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
              + KE R+  A  +F+ +K KG  ++  IY  L+    ++G++  A  L  +M     
Sbjct: 481 IDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDAC 540

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             NS ++++ I+   +   + EA     K++ M   P+V  Y  L   + K G  D A+ 
Sbjct: 541 LPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALK 600

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
            V + + ++   P    Y   +      G  E++ +V+ +M +EG  P+ V  + +I G 
Sbjct: 601 -VFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGY 659

Query: 564 CKHGTLEEA 572
            + G    A
Sbjct: 660 ARLGLTHRA 668



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 178/382 (46%), Gaps = 6/382 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD F YT++I      + +D    V+  M +   + + ++Y  LI GLC+ GR+    +L
Sbjct: 227 PDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKL 286

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F +M E+        Y VLI  L G G+  +A +L  ++ + G   ++  Y  +I GLC+
Sbjct: 287 FADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCK 346

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             + D+A K+     +  L P   T N L+    + G +D+ F++L  ME    S   + 
Sbjct: 347 ENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLME--SNSCGPNT 404

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             + E + G  K+ ++  A+ +  ++  +  S S+  YN L+    ++ +++ A  L   
Sbjct: 405 RTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSL 464

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M    L  +  ++S+ I    + G + EA    + +       +   Y  L  G CK+G+
Sbjct: 465 MNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGK 524

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           ID A  L+   L N A  P  + Y + I  +C+  + ++   ++ +M   G  P  V  +
Sbjct: 525 IDVAYSLLERML-NDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYT 583

Query: 558 AIISGMCKHGTLEEARKVFTNL 579
            +I  M K G  + A KVF ++
Sbjct: 584 ILIGEMLKDGAFDHALKVFNHM 605



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/471 (22%), Positives = 193/471 (40%), Gaps = 84/471 (17%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           +KG   +  +YNAL   YC                   +G I +  EIL+ M  N C P+
Sbjct: 362 EKGLIPSVVTYNALIDGYC------------------KEGMIDDAFEILDLMESNSCGPN 403

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
              Y  +I  L  +R +   + +  +M +  +   ++ Y +LI G CK   +   + L  
Sbjct: 404 TRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLS 463

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            M ENG++ D+  Y V I+ L  EG+V +A  L   +   G +A+  IY ++I G C+V 
Sbjct: 464 LMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVG 523

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           + D AY L E  + D   P+  T N L+    +  +M     L+A+M  +          
Sbjct: 524 KIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVK------- 576

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                                       +V  Y IL+G +L+ G    AL +F  M  L 
Sbjct: 577 ---------------------------PTVVTYTILIGEMLKDGAFDHALKVFNHMVSLG 609

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
            + +  +++  +  +   G + E  +   K+ E   +P +  Y  L  G  ++G    A 
Sbjct: 610 YQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAF 669

Query: 503 MLVRDCLGNVASGPTEFKYALTILH-----------------------------VCRSGE 533
             ++ C+ +    P+ +  ++ I +                             V ++ E
Sbjct: 670 DFLK-CMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLE 728

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
            E  +++  +M + GC  +  I  A+I+G C+   LEEA+ +  +++ER +
Sbjct: 729 YEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGM 779



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 114/262 (43%), Gaps = 13/262 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + ++ E   ++ KM     KP V  YT +I  +  +   D  L+V+  M     + DV  
Sbjct: 557 EKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCT 616

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y   +      G +    ++  +M E GIL D   Y VLI+G    G   +A D LK +V
Sbjct: 617 YTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMV 676

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D+G +  L I + +I  L    +  +     E+ +        S VN + +  A++ +  
Sbjct: 677 DTGCKPSLYIVSILIKNLSHENRMKETRS--EIGID-----SVSNVNSVDI--ADVWKTL 727

Query: 361 NFFKLLAQMEKL-KFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
            +   L   EK+ +     D+  +   + G  ++ER+  A  +   +K +G S S  IYN
Sbjct: 728 EYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYN 787

Query: 417 ILMGALLEIGEVKKALYLFGKM 438
            L+    ++G   +A+ L   M
Sbjct: 788 SLLDCCCKLGVYAEAVRLVDAM 809



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 5/169 (2%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L++ EKM  + C  DV  Y A+I     +  L+    +   MK+  +      Y +L+  
Sbjct: 733 LKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDC 792

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            CK G       L   M ENG+L     Y +L+ GL  EG   KA  +   L+  GY  D
Sbjct: 793 CCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYD 852

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
              +  +I GL +    D+  +L ++  + D     +T    + C A M
Sbjct: 853 EVAWKVLIDGLLKRDLVDECSELIDIMEEKD-----ATAQADIACAALM 896



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 116/314 (36%), Gaps = 68/314 (21%)

Query: 86  SPIARFITDAFRKNQFQWGPQVVTELSKLRRV--TPDLVAEVLKVENNPT---------- 133
           S + R + DA   N + +   ++  L K +++     LVA++L +   PT          
Sbjct: 530 SLLERMLNDACLPNSYTYNV-LIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGE 588

Query: 134 -LASKFFHWAGK------QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAE 186
            L    F  A K        GY+ +  +Y A  +      +    D V   M+ +G + +
Sbjct: 589 MLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPD 648

Query: 187 ML-------------------EILEKMRRNLCKPDVFAYTAMIRVLAAERNL-------- 219
           ++                   + L+ M    CKP ++  + +I+ L+ E  +        
Sbjct: 649 LVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIG 708

Query: 220 ---------------------DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
                                +  L+++E+M +     DV  Y  LI G C+  R+    
Sbjct: 709 IDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQ 768

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L   MKE G+     IY  L++     G   +A  L+  +V++G    L  Y  ++ GL
Sbjct: 769 GLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGL 828

Query: 319 CRVKQFDKAYKLFE 332
                 +KA  +F 
Sbjct: 829 YIEGSNEKAKAVFH 842


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 204/428 (47%), Gaps = 12/428 (2%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKP----DVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
           ++DS  R  + +   EK+ R +       +VF+Y  +IR   A  NL+  LR +EEM+++
Sbjct: 173 ILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERN 232

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
               +V+ Y T+I   CK  R+    +L R M   G+  +   Y ++I GL   G++ + 
Sbjct: 233 RCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEET 292

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
             +L ++   G+  D   YN+++ G C+V  F +A  L    +++ L PD  T   L+  
Sbjct: 293 SGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINT 352

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGY- 409
             + G ++   +   QM      +  +   +   + G  ++  M  A  +++E+   G+ 
Sbjct: 353 MCKAGNLNRAMEFFDQMHVR--GLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFP 410

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
            ++  YN L+      G +++A+ L   M G  L  + +S+S  I       ++  A + 
Sbjct: 411 PTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQM 470

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
           + +++E    P    Y+ L +GLC+   ++ A  L ++ L N +  P EF Y   I   C
Sbjct: 471 NAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEML-NKSLLPDEFTYTSLINGYC 529

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           + G+  + + + +EM ++G  P+ V  + +I+G+ K     EA+++   L   + +   N
Sbjct: 530 KEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESI--PN 587

Query: 590 TIVYDEIL 597
            I YD ++
Sbjct: 588 GITYDTLI 595



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 114/490 (23%), Positives = 201/490 (41%), Gaps = 60/490 (12%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           + G +   L   E+M RN C P+V  Y  +I      + +D   ++   M  + +E +++
Sbjct: 215 AAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLL 274

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I GLC+ GR+     +  EM   G   D   Y  L+ G    G   +A  L  ++
Sbjct: 275 TYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEM 334

Query: 300 VDSGYRADLGIYNSIIGGLC------RVKQF----------------------------- 324
           + +G   D+  Y S+I  +C      R  +F                             
Sbjct: 335 LRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFM 394

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           D+AY++++  ++    P   T N LL      GRM+    LL  ME    S   D+  + 
Sbjct: 395 DEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLS--PDVVSYS 452

Query: 385 EFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGL 441
             + G  + + +  A  +  E+  KG S   I Y+ L+  L E   + +A  LF +M   
Sbjct: 453 TIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNK 512

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
           +L  +  +++  I  + + GD+ EA   H+++I+   +P    YN L  GL K      A
Sbjct: 513 SLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREA 572

Query: 502 MMLVRDCLGN--VASGPT-----------EFKYALTILH-VCRSGEAEKIIEVLNEMTQE 547
             L+     +  + +G T           EFK  + ++   C  G   +  +V   M + 
Sbjct: 573 KRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKR 632

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV------YDEILIEHM 601
              PNE + + II G C+ G + +A K++  + +   +    TI+      Y E + E +
Sbjct: 633 NQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQL 692

Query: 602 KKKTADLVLS 611
                D++ S
Sbjct: 693 NLVIRDILRS 702



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 179/410 (43%), Gaps = 26/410 (6%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G   + L +  +M RN   PDV  YT++I  +    NL+  +  +++M    +  + + Y
Sbjct: 322 GNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTY 381

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI G  + G +   + ++ EM  +G       Y  L+ G    G++ +A  LL+ +  
Sbjct: 382 TSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEG 441

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  Y++II G CR ++ D+A+++    V+  ++PD  T + L+    E  R++ 
Sbjct: 442 KGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNE 501

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNIL 418
              L  +M  L  S+  D   +   + G  KE  +  AL++ +E+  KG+      YN+L
Sbjct: 502 ACDLFQEM--LNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVL 559

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L +    ++A  L  K          L +  +I   +    ++E+C      IE   
Sbjct: 560 INGLNKQARTREAKRLLLK----------LFYDESIPNGITYDTLIESCS----DIEFKS 605

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           V +      L KG C  G ++ A  +    +      P E  Y + I   CR G   K  
Sbjct: 606 VVA------LIKGFCMKGLMNEADQVFESMIKR-NQKPNEAVYNVIIHGHCRDGNVHKAH 658

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           ++  EM   G  P+ V   A++  +   G  E+   V  ++     L++A
Sbjct: 659 KLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDILRSCKLSDA 708



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 92/410 (22%), Positives = 166/410 (40%), Gaps = 75/410 (18%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           + G+     +YNAL   +C+S                  GR+ E + +L  M      PD
Sbjct: 406 RSGFPPTIVTYNALLNGHCVS------------------GRMEEAIGLLRGMEGKGLSPD 447

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V +Y+ +I      + LD   ++  EM +  V  D + Y +LI GLC+  R+    +LF+
Sbjct: 448 VVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQ 507

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EM    +L D   Y  LI G   EG + +A +L  +++  G+  D   YN +I GL +  
Sbjct: 508 EMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQA 567

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           +  +A +L      D+  P+  T + L+  C+++      FK          SV A ++ 
Sbjct: 568 RTREAKRLLLKLFYDESIPNGITYDTLIESCSDIE-----FK----------SVVALIKG 612

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
           F                                  + G + E  +V      F  M   N
Sbjct: 613 F---------------------------------CMKGLMNEADQV------FESMIKRN 633

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
            + N   +++ I  H   G++ +A + + ++++   +P       L K L   G  +   
Sbjct: 634 QKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLN 693

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           +++RD L +      E   AL  ++  + G  + +  +L EM ++G  P+
Sbjct: 694 LVIRDILRSCKLSDAELSKALVQIN-HKEGNIDAVFNLLTEMAKDGFLPS 742


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 202/450 (44%), Gaps = 65/450 (14%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           CKP + +Y+ +I  L  +R  D    ++EEMK   +  DV++Y TLI G C  G+  +  
Sbjct: 454 CKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAK 513

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            LF EM + GI  D     VLI+ L  +GKV +A  LL+ ++  G   D+    +++ GL
Sbjct: 514 CLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGL 573

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--------- 369
           C   +  KA +LF    +    P+  T   L+    + G +    +L   M         
Sbjct: 574 CMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGI 633

Query: 370 ----EKLKFSVAAD-LEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALL 423
                 + +S+  D L K      G+E+    A ++F+E+K  G    V  Y  L+    
Sbjct: 634 NCKPNAISYSIIIDGLCK-----CGREDE---ARELFKEMKALGVIPDVISYTSLIHGFC 685

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE--------------- 468
             G+ K A YLF +M  + ++ +  +FS+ I    + G ++EA E               
Sbjct: 686 RSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTV 745

Query: 469 ---------CHN-KIIEMSQV----------PSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
                    C N +I E +Q+          P V  Y  L KGLC+ G I  A+ L +  
Sbjct: 746 TYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKM 805

Query: 509 LGNVASGPTEFK-----YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L +     T FK     Y++ I  +C+ G  ++  E+  EM   G  PN +  +++I G 
Sbjct: 806 LSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGF 865

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVY 593
           C+ G LE+A+ +F  + ++ +  + N + Y
Sbjct: 866 CRSGKLEDAKHLFNEMVDQGV--QLNAVTY 893



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 190/406 (46%), Gaps = 15/406 (3%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           CKP + +Y+ +I  L  +R  D    +++EMK   +  DV++Y +LI G C  G+  +  
Sbjct: 161 CKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAK 220

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            LF EM + GI  D    GVLI+    EGKV +A +LL+ +V  G   D+  Y+++I GL
Sbjct: 221 CLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGL 280

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKLKFSV 376
           C   +  +A +LF    +    PD      L+    + G+++    L  +M  +  ++ +
Sbjct: 281 CMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGI 340

Query: 377 A-----ADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKK 430
                          ++ KE +++ A ++ E +  +G    +  Y+ L+  L     + +
Sbjct: 341 KCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISE 400

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE------MSQVPSVAA 484
           A +LF  M+ L    +++++   ++   ++G+I  A + H +++       +   P++ +
Sbjct: 401 ATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLIS 460

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y+ +  GLCK    D A  L  + +      P    Y   I   C SG+ EK   + NEM
Sbjct: 461 YSIIIDGLCKDRREDEARELFEE-MKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEM 519

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
              G  P+    S +I  +CK G + EA K+   + +R  + +  T
Sbjct: 520 LDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVT 565



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 195/430 (45%), Gaps = 41/430 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ E  E+LE M    C  D+  Y+ +I+ L  +  +    +++  MKK     D +A
Sbjct: 248 EGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIA 307

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV------------LIEGLVGEGK 288
           Y TL+ GLC+ G++     L +EM     L D + YG+            LI+ L  EGK
Sbjct: 308 YGTLMKGLCQTGKINIALHLHQEM-----LNDTSQYGIKCIRPDVTTSSMLIDILCKEGK 362

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           V +A +LL+ ++  G   D+  Y+++I GLC   +  +A  LF    +    PD  T   
Sbjct: 363 VIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGT 422

Query: 349 LLVCCAEMGRMDNFFKLLAQM----EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFE 402
           L+    + G ++   +L  +M     +        L  +   + G  K+ R   A ++FE
Sbjct: 423 LMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFE 482

Query: 403 ELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           E+K +G    V  Y  L+      G+ +KA  LF +M  + ++ +  + S+ I    + G
Sbjct: 483 EMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKG 542

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-----CLGNVASGP 516
            ++EA +    +I+   +  V     L KGLC    I  A  L        C+ NV +  
Sbjct: 543 KVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCA 602

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQE------GCPPNEVICSAIISGMCKHGTLE 570
           T  K       +C+SG  +  +E+   M  +       C PN +  S II G+CK G  +
Sbjct: 603 TLMK------GLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGRED 656

Query: 571 EARKVFTNLR 580
           EAR++F  ++
Sbjct: 657 EARELFKEMK 666



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 108/440 (24%), Positives = 200/440 (45%), Gaps = 29/440 (6%)

Query: 170 AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
            +  + +++  +G++ E  E+LE M +  C  D+  Y+ +I+ L  E  +     ++  M
Sbjct: 56  TSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSM 115

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN----GILIDRAI--YGVLIEGL 283
           +K     D + Y TL+ GLC+ G +    +L +EM  +    GI     +  Y ++I+GL
Sbjct: 116 QKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGL 175

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
             + +  +A +L K++   G   D+  Y S+I G C   +++KA  LF   +   + PD 
Sbjct: 176 CKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDV 235

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVF 401
           +T   L+    + G++    +LL  M  +      D+  +   + G   + RI  A  +F
Sbjct: 236 TTSGVLIDMFCKEGKVIEANELLEVM--VHRGCILDIVTYSTLIKGLCMKHRISEATQLF 293

Query: 402 EELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKM---------RGLNLEVNSLSFS 451
             +K  G     I Y  LM  L + G++  AL+L  +M         + +  +V + S  
Sbjct: 294 MSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSML 353

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
           I I C  + G ++EA E    +I+   +  +  Y+ L KGLC    I  A  L    +  
Sbjct: 354 IDILC--KEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMS-MQK 410

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG------CPPNEVICSAIISGMCK 565
           +   P    Y   +  +C++G     +++  EM  +       C P  +  S II G+CK
Sbjct: 411 LGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCK 470

Query: 566 HGTLEEARKVFTNLRERKLL 585
               +EAR++F  ++ + ++
Sbjct: 471 DRREDEARELFEEMKAQGIM 490



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 187/418 (44%), Gaps = 25/418 (5%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  E  E+ ++M+     PDV +YT++I         +    ++ EM    ++ DV    
Sbjct: 180 REDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSG 239

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI   CK G+V+  +EL   M   G ++D   Y  LI+GL  + ++ +A  L   +   
Sbjct: 240 VLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKL 299

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD-------LAPDFSTVNPLLVCCAE 355
           G R D   Y +++ GLC+  + + A  L +  + D        + PD +T + L+    +
Sbjct: 300 GCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCK 359

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP 413
            G++    +LL  M  ++     D+  +   + G   E RI  A  +F  ++  G     
Sbjct: 360 EGKVIEANELLEVM--IQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDA 417

Query: 414 I-YNILMGALLEIGEVKKALYLFGKM------RGLNLEVNSLSFSIAIQCHVESGDILEA 466
           I Y  LM  L + G +  AL L  +M       G+  +   +S+SI I    +     EA
Sbjct: 418 ITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEA 477

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
            E   ++     +P V +Y  L  G C  G+ + A  L  + L +V   P     ++ I 
Sbjct: 478 RELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEML-DVGIQPDVTTSSVLID 536

Query: 527 HVCRSG---EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            +C+ G   EA K++EV+    Q GC  + V C+ ++ G+C    + +A ++F  +++
Sbjct: 537 MLCKKGKVIEANKLLEVV---IQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQK 591



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 158/335 (47%), Gaps = 17/335 (5%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL------VEA 236
           RI++  ++  KM++  C P+V     +++ L    N+   L + + M  D        + 
Sbjct: 578 RISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKP 637

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           + ++Y  +I GLCK GR     ELF+EMK  G++ D   Y  LI G    GK   A  L 
Sbjct: 638 NAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLF 697

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            ++VD G + D+  ++ +I  LC+  +  +A +L EV +Q    P+  T   L+      
Sbjct: 698 NEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMN 757

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL------KGKG 408
            R+    +L  +M+KL      D+  +   + G  +   I  AL++ +++       G  
Sbjct: 758 DRISEATQLFMKMQKL--GCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTN 815

Query: 409 YS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
           +   V  Y+I++  L + G   +A  LF +M+ L +  N +S++  I     SG + +A 
Sbjct: 816 FKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAK 875

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
              N++++     +   Y+ +  G CK G+ID A+
Sbjct: 876 HLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKAL 910



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 186/448 (41%), Gaps = 82/448 (18%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKK-----DLV----EADVMAYVTLIMGLCKG 251
           PD F +  +I  L   + ++  L     + +     D+V      DV     LI  LCK 
Sbjct: 8   PDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKE 67

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           G+V+  +EL   M + G ++D   Y  LI+GL  E ++ +A  L   +   G R D   Y
Sbjct: 68  GKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITY 127

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
            +++ GLC+    + A +L +  + D                   GR    + +  +   
Sbjct: 128 GTLMKGLCQTGNINIALQLHQEMLNDT------------------GR----YGIKCKPTL 165

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKK 430
           + +S+  D        + K+ R   A ++F+E+K +G    V  Y  L+      G+ +K
Sbjct: 166 ISYSIIID-------GLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEK 218

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC--------------------- 469
           A  LF +M  + ++ +  +  + I    + G ++EA E                      
Sbjct: 219 AKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIK 278

Query: 470 ----HNKIIEMSQV----------PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS- 514
                ++I E +Q+          P   AY  L KGLC+ G+I+ A+ L ++ L + +  
Sbjct: 279 GLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQY 338

Query: 515 -----GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
                 P     ++ I  +C+ G+  +  E+L  M Q GC  + V  S +I G+C    +
Sbjct: 339 GIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRI 398

Query: 570 EEARKVFTNLRERKLLTEANTIVYDEIL 597
            EA  +F ++  +KL    + I Y  ++
Sbjct: 399 SEATWLFMSM--QKLGCRPDAITYGTLM 424



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 138/313 (44%), Gaps = 43/313 (13%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           NA++Y +  + L +            GR  E  E+ ++M+     PDV +YT++I     
Sbjct: 638 NAISYSIIIDGLCKC-----------GREDEARELFKEMKALGVIPDVISYTSLIHGFCR 686

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
                    ++ EM    V+ DV  +  LI  LCK G+V+  +EL   M + G + +   
Sbjct: 687 SGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVT 746

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           Y  L++GL    ++ +A  L   +   G   D+  Y +++ GLC+      A +L +  +
Sbjct: 747 YTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKML 806

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD-LEKFFEFLVGKEERI 394
            D                   G+    FK     + + +S+  D L K      G+E+  
Sbjct: 807 SDT------------------GQYGTNFK----PDVISYSIIIDGLCKH-----GREDE- 838

Query: 395 MMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
             A ++F+E+K  G   +V  Y  L+      G+++ A +LF +M    +++N++++S+ 
Sbjct: 839 --ARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVM 896

Query: 454 IQCHVESGDILEA 466
           I    + G I +A
Sbjct: 897 IHGFCKEGQIDKA 909



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 98/201 (48%), Gaps = 8/201 (3%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           +++  +G++ E  E+LE M +  C P+   YT +++ L     +    +++ +M+K    
Sbjct: 717 DMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCL 776

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKEN------GILIDRAIYGVLIEGLVGEGKV 289
            DV+ Y TL+ GLC+ G +    EL ++M  +          D   Y ++I+GL   G+ 
Sbjct: 777 PDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGRE 836

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            +A +L K++   G   ++  Y S+I G CR  + + A  LF   V   +  +  T + +
Sbjct: 837 DEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVM 896

Query: 350 LVCCAEMGRMDNFFKLLAQME 370
           +    + G++D    L  +ME
Sbjct: 897 IHGFCKEGQIDK--ALFQKME 915


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 216/489 (44%), Gaps = 40/489 (8%)

Query: 122 VAEVLKVENNPTLASKFF-H-WAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD 179
           V  V+  E + + A KF+ H +    KG++ N  +YN +   L +               
Sbjct: 142 VLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCK--------------- 186

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
             G+I   ++   +M    C PDVF Y+ ++  L  ER +D  + + +EM+ +    + +
Sbjct: 187 -LGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPV 245

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            +  LI  L K G + R  +L   M   G + +   Y  LI GL  +GK+ KA  LL+ +
Sbjct: 246 TFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKM 305

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V S    +   Y +II GL + ++ +    +     +     +    + L+    + G+ 
Sbjct: 306 VSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKS 365

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYN 416
           +N  +L  +M +       ++  +  F+ G  ++E+   A D+ +E+  KG+  +   Y+
Sbjct: 366 ENAVRLWKEMAEK--GCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYS 423

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            LM    + G+ +KA+ ++ +M   ++  N +  S+ +    ESG + EA      ++  
Sbjct: 424 SLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGE 483

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAE 535
              P V AY+ + KGLC +G +D  + L  +       S P    Y +    +CR     
Sbjct: 484 GLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLT 543

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           + I++LN M  EGC P+ + C+  +                  LRER    +   +  DE
Sbjct: 544 RAIDLLNSMLDEGCDPDSLTCNIFLE----------------TLRERINPPQDGRLFLDE 587

Query: 596 ILIEHMKKK 604
           +++  +K++
Sbjct: 588 LVVRLLKRE 596



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 113/516 (21%), Positives = 209/516 (40%), Gaps = 66/516 (12%)

Query: 90  RFITDAFRKNQFQWGPQVVTELSKLRRVTPD----LVAEVLKVENNPTLASKFFHWAGKQ 145
           R I +     +F +  QV+  + +  RV  +    L+ +     + P  A  FFH     
Sbjct: 70  RLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRMAND 129

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
              K    S+N++   + +   F  A +              L +     +   +P++  
Sbjct: 130 LHCKQTVKSFNSVLNVIIQEGDFSYAFKF------------YLHVFGANSKGF-QPNLLT 176

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  +I+ L     +D  +  + EM       DV  Y TL+ GLCK  RV     L  EM+
Sbjct: 177 YNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQ 236

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
             G L +   + VLI+ L   G + +A  L+ ++   G   +   YN++I GLC   + D
Sbjct: 237 AEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLD 296

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           KA  L E  V     P+  T   ++    +  R ++   +L  ME+              
Sbjct: 297 KALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEE-------------- 342

Query: 386 FLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
                              +G+  +   IY+ L+  L + G+ + A+ L+ +M     + 
Sbjct: 343 -------------------RGQKANEY-IYSSLISGLFKEGKSENAVRLWKEMAEKGCKP 382

Query: 446 NSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM- 502
           N + +   I   C  E  D  EA +   +++    +P+   Y+ L KG  K G+   A+ 
Sbjct: 383 NVVVYGAFIDGLCRDEKPD--EAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAIL 440

Query: 503 ----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
               M+ +D   NV         ++ +  +C SG   + + V   M  EG  P+ V  S+
Sbjct: 441 VWKEMMSQDMRHNVVCC------SVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSS 494

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           +I G+C  G++++  K+F  ++ ++  +  + + Y+
Sbjct: 495 MIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYN 530



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 158/354 (44%), Gaps = 14/354 (3%)

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKV-GKACDLLKDLVDSGY-RADLGIYNSII 315
           H++   MK  G ++   I+ +LI    G+  + G+A +    + +  + +  +  +NS++
Sbjct: 85  HQVLDRMKREGRVLTETIF-ILIFKACGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVL 143

Query: 316 GGLCRVKQFDKAYKLFEVTVQDD---LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
             + +   F  A+K +      +     P+  T N ++    ++G++D       +M  L
Sbjct: 144 NVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREM-PL 202

Query: 373 KFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVK 429
           K +   D+  +   + G  KE R+  A+ + +E++ +G    P+ +N+L+ AL + G++ 
Sbjct: 203 K-NCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLS 261

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
           +A  L   M       N ++++  I      G + +A     K++    VP+   Y  + 
Sbjct: 262 RAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTII 321

Query: 490 KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
            GL K    +  + ++   +        E+ Y+  I  + + G++E  + +  EM ++GC
Sbjct: 322 NGLVKQRRAEDGVHILMS-MEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGC 380

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
            PN V+  A I G+C+    +EA  +   +  +  L   N   Y  ++    KK
Sbjct: 381 KPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFL--PNAFTYSSLMKGFFKK 432


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 194/431 (45%), Gaps = 10/431 (2%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L+DS    GR+   +   ++M ++     V+AY ++I       +L A   ++ EM    
Sbjct: 406 LIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKG 465

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           VE     + +LI G CK  +V +  +L+ +M +NGI  +   +  LI GL    K+ +A 
Sbjct: 466 VEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEAS 525

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           +L  +LV+   +     YN +I G CR  + DKA++L E   Q  L PD  T  PL+   
Sbjct: 526 ELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGL 585

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SV 412
              GR+      +  + K    +             +E R+M AL    E+  +G +  +
Sbjct: 586 CSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDL 645

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             + +L+   L+  + K    L   M    L  +++ ++  I  + + G   +A EC + 
Sbjct: 646 VCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDL 705

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEID-AAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           ++     P+V  Y  L  GLCK GE+D A ++  R    NV   P    Y   + ++ + 
Sbjct: 706 MVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVP--PNSITYGCFLDNLTKE 763

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           G  ++ I + + M + G   N V  + II G CK G   EA KV + + E  +  +   +
Sbjct: 764 GNMKEAIGLHHAMLK-GLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDC--V 820

Query: 592 VYDEILIEHMK 602
            Y  ++ E+ +
Sbjct: 821 TYSTLIYEYCR 831



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 133/538 (24%), Positives = 243/538 (45%), Gaps = 29/538 (5%)

Query: 80  QLQRHLSPI-------ARFIT---DAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVL-KV 128
            L RH S          RF++   D  R  Q  W      + S    + P  V +VL   
Sbjct: 22  SLHRHFSASKPDEENDCRFVSLLCDIVRGKQ-SW-KVAFNDASISSTLRPHHVEQVLMNT 79

Query: 129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE---LMDSQGRIA 185
            ++  LA +FF++ G  K   H+  SY  + + L  + LF  A+ +     L +S  +  
Sbjct: 80  LDDAKLALRFFNFLGLHKNMNHSTTSYAIMVHALVHSRLFWPANSLLHTLLLRESHPKCV 139

Query: 186 EMLEILEKMRRNLCK-PDVFAYTAMIR-VLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
                L+  +R  CK      +  +++  + + R  DA + V      +L+  +V     
Sbjct: 140 -FSHFLDSYKR--CKFSSTLGFNLLVQNYVLSSRIFDAVVIVKLMFANNLL-PEVRTLSA 195

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+ GL K  + +   ELF E    G+  D      ++  +       +A + ++ +  +G
Sbjct: 196 LLNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANG 255

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
           +   +  YN +I GLC+  +  +A ++        LA D  T   L++    + + +   
Sbjct: 256 FDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGI 315

Query: 364 KLLAQMEKLKFS-VAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGA 421
           +L+ +M +L FS   A +    + L  K+ +I  A ++  ++   G+  ++ +YN L+ +
Sbjct: 316 QLMDEMVELGFSPTEAAVSGLVDGL-RKQGKIDDAYELVVKVGRFGFVPNLFVYNALINS 374

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L + G++ KA  L+  M  +NL  N +++SI I     SG +  A    +++I+     +
Sbjct: 375 LCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGET 434

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V AYN L  G CK G++ AA  L  + + N    PT   +   I   C+  + +K  ++ 
Sbjct: 435 VYAYNSLINGQCKFGDLSAAESLFIE-MTNKGVEPTATTFTSLISGYCKDLQVQKAFKLY 493

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           N+M   G  PN    +A+ISG+C    + EA ++F  L ERK+  +   + Y+ +LIE
Sbjct: 494 NKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKI--KPTEVTYN-VLIE 548



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 185/406 (45%), Gaps = 3/406 (0%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ +  ++  KM  N   P+V+ +TA+I  L +   +     +++E+ +  ++   + Y 
Sbjct: 485 QVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYN 544

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI G C+ G++ +  EL  +M + G++ D   Y  LI GL   G+V KA D + DL   
Sbjct: 545 VLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQ 604

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
             + +   Y++++ G C+  +  +A       +Q  +  D      L+    +      F
Sbjct: 605 NVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTF 664

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL-KGKGYSSVPIYNILMGA 421
           F LL  M          +         KE     A + ++ +   + + +V  Y  LM  
Sbjct: 665 FDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNG 724

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L + GE+ +A  LF +M+  N+  NS+++   +    + G++ EA   H+ +++   + +
Sbjct: 725 LCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLK-GLLAN 783

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
              +N + +G CK+G    A  ++ +   N    P    Y+  I   CRSG     +++ 
Sbjct: 784 TVTHNIIIRGFCKLGRFHEATKVLSEMTEN-GIFPDCVTYSTLIYEYCRSGNVGASVKLW 842

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           + M   G  P+ V  + +I G C +G L++A ++  ++  R ++ +
Sbjct: 843 DTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPD 888



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 179/399 (44%), Gaps = 6/399 (1%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           E +  M  N     +  Y  +I  L     +   + V   +    + ADV+ Y TL++G 
Sbjct: 246 EKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGF 305

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C+  +   G +L  EM E G     A    L++GL  +GK+  A +L+  +   G+  +L
Sbjct: 306 CRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNL 365

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
            +YN++I  LC+    DKA  L+      +L P+  T + L+      GR+D       +
Sbjct: 366 FVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDR 425

Query: 369 MEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
           M  ++  +   +  +   + G  K   +  A  +F E+  KG   +   +  L+    + 
Sbjct: 426 M--IQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKD 483

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
            +V+KA  L+ KM    +  N  +F+  I     +  + EA E  ++++E    P+   Y
Sbjct: 484 LQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTY 543

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           N L +G C+ G+ID A  L+ D +      P  + Y   I  +C +G   K  + ++++ 
Sbjct: 544 NVLIEGYCRDGKIDKAFELLED-MHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLH 602

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           ++    NE+  SA++ G C+ G L EA      + +R +
Sbjct: 603 KQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGI 641



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 150/329 (45%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G+I +  E+LE M +    PD + Y  +I  L +   +       +++ K  V+ + M 
Sbjct: 553 DGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMC 612

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ G C+ GR++       EM + GI +D   + VLI+G + +       DLLKD+ 
Sbjct: 613 YSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMH 672

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D G R D  IY S+I    +   F KA++ +++ V ++  P+  T   L+    + G MD
Sbjct: 673 DQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMD 732

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
               L  +M+       +     F   + KE  +  A+ +   +     ++   +NI++ 
Sbjct: 733 RAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIIIR 792

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              ++G   +A  +  +M    +  + +++S  I  +  SG++  + +  + ++     P
Sbjct: 793 GFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEP 852

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
            + AYN L  G C  GE+D A  L  D L
Sbjct: 853 DLVAYNLLIYGCCVNGELDKAFELRDDML 881



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 12/187 (6%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           N + Y    N L +A +     MD  G +       ++M+     P+   Y   +  L  
Sbjct: 714 NVVTYTALMNGLCKAGE-----MDRAGLL------FKRMQAANVPPNSITYGCFLDNLTK 762

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
           E N+   + +   M K L+ A+ + +  +I G CK GR     ++  EM ENGI  D   
Sbjct: 763 EGNMKEAIGLHHAMLKGLL-ANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVT 821

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           Y  LI      G VG +  L   +++ G   DL  YN +I G C   + DKA++L +  +
Sbjct: 822 YSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDML 881

Query: 336 QDDLAPD 342
           +  + PD
Sbjct: 882 RRGIIPD 888


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 127/545 (23%), Positives = 239/545 (43%), Gaps = 19/545 (3%)

Query: 70  QSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVE 129
            S  S P+   L      ++  +     +  +Q  P +   L  L   TP  V+ +    
Sbjct: 22  SSIASLPQILSLDSEPVDLSAQLLSILSRPNWQKHPSLRKLLPSL---TPSHVSSLFAFN 78

Query: 130 NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVP-ELMDSQGRIAEML 188
            +P  A  FF+W   + G+KHN  SY+++   L R  L   A+++   ++ S   I ++L
Sbjct: 79  LDPQTALSFFNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCSIEDVL 138

Query: 189 EILEKMRRNLC------KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
            +LE  R+         KP +  Y  ++  L+    +D    V+ E+  + +  ++  + 
Sbjct: 139 FVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFN 198

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++ G CK G VV       ++ + G+  D   Y  LI G      V  A ++   +   
Sbjct: 199 AMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQK 258

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + +   Y ++I GLC   + ++A KLF    +D+  P   T   L+   +  GR    
Sbjct: 259 GCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEA 318

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILM 419
             L  +M++       ++  +   + G  KE ++  A  +  E+  KG   SV  YN L+
Sbjct: 319 LNLFNEMKEK--GCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALI 376

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               + G +  A  +   M   +   N+ +++  I    +   + +A    NK++E    
Sbjct: 377 DGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLS 436

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           PS+  YN L  G CK+ ++++A  L+   +      P ++ Y++ I  +C+ G  E+   
Sbjct: 437 PSLITYNSLIHGQCKVNDLESAYRLL-SLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGT 495

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           + + +  +G   NEVI +A+I G CK G ++ A  +   +     L   N+  Y+ +LIE
Sbjct: 496 LFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACL--PNSYTYN-VLIE 552

Query: 600 HMKKK 604
            + K+
Sbjct: 553 GLCKE 557



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 190/429 (44%), Gaps = 18/429 (4%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           QKG + N  SY  L + L                   GRI E L++   M  + C P V 
Sbjct: 257 QKGCQRNEVSYTNLIHGLCE----------------AGRINEALKLFADMTEDNCCPTVR 300

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            YT +I  L+        L ++ EMK+   E +V  Y  LI GLCK  ++    ++  EM
Sbjct: 301 TYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEM 360

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            E G++     Y  LI+G   EG +  A ++L  +  +    +   YN +I GLC+ ++ 
Sbjct: 361 SEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKV 420

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            KA  L    ++  L+P   T N L+    ++  +++ ++LL+ M +            F
Sbjct: 421 HKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVF 480

Query: 385 EFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
              + KE R+  A  +F+ +K KG  ++  IY  L+    ++G++  A  L  +M     
Sbjct: 481 IDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDAC 540

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             NS ++++ I+   +   + EA     K++ M   P+V  Y  L   + K G  D A+ 
Sbjct: 541 LPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALK 600

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
            V + + ++   P    Y   +      G  E++ +V+ +M +EG  P+ V  + +I G 
Sbjct: 601 -VFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGY 659

Query: 564 CKHGTLEEA 572
            + G    A
Sbjct: 660 ARLGLTHRA 668



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 178/382 (46%), Gaps = 6/382 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD F YT++I      + +D    V+  M +   + + ++Y  LI GLC+ GR+    +L
Sbjct: 227 PDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKL 286

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F +M E+        Y VLI  L G G+  +A +L  ++ + G   ++  Y  +I GLC+
Sbjct: 287 FADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCK 346

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             + D+A K+     +  L P   T N L+    + G +D+ F++L  ME    S   + 
Sbjct: 347 ENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLME--SNSCGPNT 404

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             + E + G  K+ ++  A+ +  ++  +  S S+  YN L+    ++ +++ A  L   
Sbjct: 405 RTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSL 464

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M    L  +  ++S+ I    + G + EA    + +       +   Y  L  G CK+G+
Sbjct: 465 MNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGK 524

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           ID A  L+   L N A  P  + Y + I  +C+  + ++   ++ +M   G  P  V  +
Sbjct: 525 IDVAYSLLERML-NDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYT 583

Query: 558 AIISGMCKHGTLEEARKVFTNL 579
            +I  M K G  + A KVF ++
Sbjct: 584 ILIGEMLKDGAFDHALKVFNHM 605



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 108/460 (23%), Positives = 191/460 (41%), Gaps = 73/460 (15%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           +KG   +  +YNAL   YC                   +G I +  EIL+ M  N C P+
Sbjct: 362 EKGLIPSVVTYNALIDGYC------------------KEGMIDDAFEILDLMESNSCGPN 403

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
              Y  +I  L  +R +   + +  +M +  +   ++ Y +LI G CK   +   + L  
Sbjct: 404 TRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLS 463

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            M ENG++ D+  Y V I+ L  EG+V +A  L   +   G +A+  IY ++I G C+V 
Sbjct: 464 LMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVG 523

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           + D AY L E  + D   P+  T N L+    +  +M     L+A+M  +          
Sbjct: 524 KIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVK------- 576

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                                       +V  Y IL+G +L+ G    AL +F  M  L 
Sbjct: 577 ---------------------------PTVVTYTILIGEMLKDGAFDHALKVFNHMVSLG 609

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
            + +  +++  +  +   G + E  +   K+ E   +P +  Y  L  G  ++G    A 
Sbjct: 610 YQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAF 669

Query: 503 MLVRDCLGNVASGPT------------------EFKYALTILHVCRSGEAEKIIEVLNEM 544
             ++ C+ +    P+                  E +  + I  V  + E E  +++  +M
Sbjct: 670 DFLK-CMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKM 728

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
            + GC  +  I  A+I+G C+   LEEA+ +  +++ER +
Sbjct: 729 VEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGM 768



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 98/467 (20%), Positives = 188/467 (40%), Gaps = 71/467 (15%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           +  +YN+L +   + N   +A ++  LM+  G +                PD + Y+  I
Sbjct: 438 SLITYNSLIHGQCKVNDLESAYRLLSLMNENGLV----------------PDQWTYSVFI 481

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
             L  E  ++    +++ +K   V+A+ + Y  LI G CK G++   + L   M  +  L
Sbjct: 482 DTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACL 541

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
            +   Y VLIEGL  E K+ +A  L+  ++  G +  +  Y  +IG + +   FD A K+
Sbjct: 542 PNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKV 601

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-------LKFSVAAD---- 379
           F   V     PD  T    L      G ++    ++A+M +       + ++V  D    
Sbjct: 602 FNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYAR 661

Query: 380 ---LEKFFEFL---------------------VGKEERIM------------------MA 397
                + F+FL                     +  E R+                   +A
Sbjct: 662 LGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIA 721

Query: 398 LDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
           L +FE++   G +  V IY  L+    +   +++A  L   M+   +  +   ++  + C
Sbjct: 722 LKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDC 781

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
             + G   EA    + ++E   +P + +Y  L  GL   G  + A  +    L +     
Sbjct: 782 CCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLL-SCGYNY 840

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
            E  + + I  + +    ++  E+++ M ++GC PN +  S +I G+
Sbjct: 841 DEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGL 887


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 110/483 (22%), Positives = 205/483 (42%), Gaps = 62/483 (12%)

Query: 112 SKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA 171
           S  + + PD V +VL ++ +   A +FF WA KQ+GY HN  +Y  +   L R  +F   
Sbjct: 176 SMAQDLNPDAVVKVLNLQTDAQNALRFFQWADKQEGYDHNTDAYFTMIDILGRAKMFTEL 235

Query: 172 DQVPELMDSQ-------------------GRIAEMLEILEKMRRNLCKP----------- 201
             + + M +Q                   GR  E LE    M+    +P           
Sbjct: 236 QSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVL 295

Query: 202 -------------DVFA-------------YTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
                        ++FA             YT+MI+    +  ++  +++ ++M ++   
Sbjct: 296 VSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYA 355

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            DV+ Y  +I  LCK   + + + + ++M+ENG   +   Y  LI+GL    +  +A +L
Sbjct: 356 PDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALEL 415

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
           +  +   G   ++  Y  +  GLC++++ D+A ++F   +   L P+  T N LL     
Sbjct: 416 VTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCR 475

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SV 412
             R+     +L +M   +     D   +   + G  +  ++  AL + +E++ KGY  + 
Sbjct: 476 GSRLIEAMDILKEMH--QNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNF 533

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
              NIL   L  +G  K A   + +M+      ++  + +AI C   +G++ EA     +
Sbjct: 534 DTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYE 593

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           +I     P++  YN + KG C+ G +D A  ++   + N   GP    Y + I      G
Sbjct: 594 MINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIEN-GIGPDTGSYNILIKEFHNQG 652

Query: 533 EAE 535
             +
Sbjct: 653 RTQ 655



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 145/330 (43%), Gaps = 10/330 (3%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           I +   +L+KMR N C+P+++ Y A+I+ L A R  +  L +   M++  V  ++  Y  
Sbjct: 374 IEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTI 433

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L  GLCK  R+ R  E+F E    G+  +R  Y  L+ G     ++ +A D+LK++  + 
Sbjct: 434 LTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQND 493

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
              D   Y ++I GL +  Q   A ++ +         +F T+N L    A +G   +  
Sbjct: 494 CTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDAS 553

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGAL 422
               +M+   F+ +A         +     +  A  +  E+  KGYS ++  YN ++   
Sbjct: 554 IFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGF 613

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV--- 479
              G +  A  +   M    +  ++ S++I I+     G   +A + +   +E   V   
Sbjct: 614 CRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQLYATALERGVVLNP 673

Query: 480 -PSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
            P +   + L +GL +  E      LVR C
Sbjct: 674 KPVIQEPDELPEGLVRSQE-----ELVRGC 698



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 20/224 (8%)

Query: 146 KGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           +G K N  +YN L   YC                     R+ E ++IL++M +N C PD 
Sbjct: 457 RGLKPNRVTYNTLLNGYCRG------------------SRLIEAMDILKEMHQNDCTPDH 498

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT +I+ L     L   LR+ +EM+    + +      L  GL + G        +R 
Sbjct: 499 VTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRR 558

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           MK+ G     + Y + I  L   G++ +A  LL ++++ GY  +L  YN++I G CR  +
Sbjct: 559 MKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGR 618

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
            D A  +    +++ + PD  + N L+      GR  +  +L A
Sbjct: 619 LDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQLYA 662



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 109/523 (20%), Positives = 204/523 (39%), Gaps = 74/523 (14%)

Query: 76  PKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLA 135
           P + +  R  +P  +   ++ R + F    +     S+  R           V  N +L 
Sbjct: 63  PYSHRFHRQYTPTTKTCNNSSRHDTF---TKSHNNFSRYHRF----------VSANTSLY 109

Query: 136 SKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLE------ 189
             F H  G    Y+  + + N      S      A   V +  D+  +I + +E      
Sbjct: 110 LLFCH-VGAVDIYQRKYPTKNGFNPSKSLRAKASANALVVQQEDTVNKICKAIEEDQWEC 168

Query: 190 ----ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV--WEEMKKDLVEADVMAYVT 243
                L  M ++L  PD     A+++VL  + +    LR   W + K++  + +  AY T
Sbjct: 169 LQDNFLNSMAQDL-NPD-----AVVKVLNLQTDAQNALRFFQWAD-KQEGYDHNTDAYFT 221

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I  L +         L ++M+  G  I R++    +      G+  ++ +    + + G
Sbjct: 222 MIDILGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMG 281

Query: 304 YRADL--GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           Y   L    YNS++  L + K+ D A  LF   + + ++ +  T   ++ C     +M++
Sbjct: 282 YEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMED 341

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
             KLL  M  ++ + A D                                V  Y I++ A
Sbjct: 342 AMKLLDDM--IQNNYAPD--------------------------------VVTYTIVISA 367

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQV 479
           L +   +++A  +  KMR    E N  +++  IQ  C V   +  EA E    + +    
Sbjct: 368 LCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPE--EALELVTLMEQGGVP 425

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P++  Y  LT GLCK+  +D A  +  + L      P    Y   +   CR     + ++
Sbjct: 426 PNIYTYTILTHGLCKLRRLDRAKEMFNEALAR-GLKPNRVTYNTLLNGYCRGSRLIEAMD 484

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           +L EM Q  C P+ V  + +I G+ +   L +A ++   +  +
Sbjct: 485 ILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENK 527



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 115/248 (46%), Gaps = 9/248 (3%)

Query: 356 MGRMDNFFKLLAQMEKLKFS---VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSV 412
           +GR   F +L + ++K++     +   +   F    G+  R   +L+ F  +K  GY   
Sbjct: 226 LGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPG 285

Query: 413 PI---YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
            I   YN ++ +L++  ++  A  LF +M    +  N+L+++  IQC      + +A + 
Sbjct: 286 LIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKL 345

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
            + +I+ +  P V  Y  +   LCK   I+ A  +++    N    P  + Y   I  +C
Sbjct: 346 LDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMREN-GCEPNIYTYNALIQGLC 404

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
                E+ +E++  M Q G PPN    + +  G+CK   L+ A+++F     R L  + N
Sbjct: 405 AVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGL--KPN 462

Query: 590 TIVYDEIL 597
            + Y+ +L
Sbjct: 463 RVTYNTLL 470


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 182/403 (45%), Gaps = 10/403 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +   + +++ M     KP +  + ++++ L   R  D    V+  M +  V  DV ++
Sbjct: 206 GDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSF 265

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G C+ G V    + ++EM++ G+  D   +  LI      GK+  A   L+++  
Sbjct: 266 NILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKG 325

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D  IY  +IGG CR     +A ++ +  V     PD  T N LL    +  R+ +
Sbjct: 326 LGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLD 385

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYNIL 418
             +LL +M++    V  DL  F   + G  ++     AL +F+ L   +    V  YN L
Sbjct: 386 AEELLNEMKER--GVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSL 443

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  +   G++ KA  L+  M    +  N +++SI I  H E G + EA    ++++    
Sbjct: 444 IDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGN 503

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILH-VCRSGEAEK 536
           +P++  YN + KG C+ G +      ++  +  N+      F    T++H   +      
Sbjct: 504 LPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFN---TLIHGYIKEENMHG 560

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
              V N M +E   P+ V  + II+G  + G +EEA +VF  +
Sbjct: 561 AFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKM 603



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 186/409 (45%), Gaps = 13/409 (3%)

Query: 202 DVFAYTAMIRVLAAERNL--DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +V AYT  I V +  ++L  D    V  EM+K  V  DV+ +  LI    + G V     
Sbjct: 154 EVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIA 213

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L   M   G+      +  +++GL    +  KA ++ + +       D+  +N +IGG C
Sbjct: 214 LVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFC 273

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           RV + ++A K ++   Q  + PD  + + L+   +  G+MD+    L +M+ L       
Sbjct: 274 RVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGV 333

Query: 380 LEKFFEFLVG---KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLF 435
           +   +  ++G   +   +  AL V +E+ G G    V  YN L+  L +   +  A  L 
Sbjct: 334 I---YTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELL 390

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M+   +  +  +F+  I  +   G+  +A +  + ++     P V AYN L  G+C+ 
Sbjct: 391 NEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRK 450

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G++  A  L  D        P    Y++ I   C  G+ E+    L+EM  +G  PN + 
Sbjct: 451 GDLAKANELWDDMHAREIF-PNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMT 509

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIVYDEILIEHM 601
            ++II G C+ G +++ ++    + +  +L +    NT+++  I  E+M
Sbjct: 510 YNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENM 558



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/486 (21%), Positives = 202/486 (41%), Gaps = 42/486 (8%)

Query: 100 QFQWGPQVVTELSKLRRVTPDLVAEVLKVEN----NPTLASKFFHWAGKQKGYKHNFASY 155
           +F     V++E+ K R V PD+V   + ++         A+     +   KG K    ++
Sbjct: 172 EFDKADTVISEMEK-RCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTF 230

Query: 156 NALAYCLSRNNLFRAADQVPELMDS-------------------QGRIAEMLEILEKMRR 196
           N++   L ++  F  A +V   MD                     G + E ++  ++M++
Sbjct: 231 NSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQ 290

Query: 197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
               PDV +++ +I + +    +D       EMK   +  D + Y  +I G C+ G +  
Sbjct: 291 RGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSE 350

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
              +  EM   G L D   Y  L+ GL  + ++  A +LL ++ + G   DL  + ++I 
Sbjct: 351 ALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIH 410

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME------ 370
           G CR   F+KA +LF+  +   L PD    N L+      G +    +L   M       
Sbjct: 411 GYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFP 470

Query: 371 -KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEV 428
             + +S+  D          ++ ++  A    +E+  KG   ++  YN ++      G V
Sbjct: 471 NHVTYSILIDSH-------CEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNV 523

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PSVAAYNC 487
           KK      KM   N+  + ++F+  I  +++  ++  A    N I+E   V P    YN 
Sbjct: 524 KKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFN-IMEKEMVQPDAVTYNM 582

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           +  G  + G ++ A  + +  +G     P  + Y   I     +G +++  ++ +EM   
Sbjct: 583 IINGFSEQGNMEEAGRVFKK-MGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHR 641

Query: 548 GCPPNE 553
           G  P++
Sbjct: 642 GFAPDD 647



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 129/296 (43%), Gaps = 9/296 (3%)

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N ++   C+  +FDKA  +     +  + PD  T N L+      G +D    L+  M  
Sbjct: 161 NIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMAN 220

Query: 372 LKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEV 428
               +   +  F   L G  K  R   A +VF  +     +  V  +NIL+G    +GEV
Sbjct: 221 K--GLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEV 278

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
           ++A+  + +M+   +  + +SFS  I      G +  A     ++  +  VP    Y  +
Sbjct: 279 EEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMV 338

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
             G C+ G +  A+  VRD +  +   P    Y   +  +C+        E+LNEM + G
Sbjct: 339 IGGFCRAGSMSEALR-VRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERG 397

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
             P+    + +I G C+ G  E+A ++F  L  ++L    + + Y+  LI+ M +K
Sbjct: 398 VTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRL--RPDVVAYNS-LIDGMCRK 450


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 120/455 (26%), Positives = 205/455 (45%), Gaps = 23/455 (5%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + + L + ++MR    +  V+ Y ++I       N      +  EM +  +     +
Sbjct: 383 RGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAAS 442

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI GLC+ G +    EL REM  NG+  +   +  LI G   +G + +A  L   ++
Sbjct: 443 YSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMI 502

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-VCCAEMGRM 359
           DS    +   +N +I G CRV    KA++L++  V   L PD  T   L+ V C  +G M
Sbjct: 503 DSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAM 562

Query: 360 D--NFFKLLAQMEKL--KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI- 414
               F   L     +   FS+   +  F      KE R+     +++E++ +G     I 
Sbjct: 563 KAKEFVDDLENNCVVLNSFSLTTLMYGF-----CKEGRLTETYHIWDEMRARGVKLDLIS 617

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           + +++ A L++ + +K   LF +M+   ++ +++  +  I  H +  +I++A  C +K+I
Sbjct: 618 FTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKMI 677

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILHVCRSGE 533
                P+V  Y  L   LCK G + +A +L  + L G     P  F Y   +  +   GE
Sbjct: 678 ADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFL--PNSFTYNCFLDFLANEGE 735

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
            EK  +VL+    EGC  N V  + +I G CK G ++ A  +  N  E     +   I Y
Sbjct: 736 LEKA-KVLHATILEGCLANTVTFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDC--ISY 792

Query: 594 DEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
             I+ E  K    +      K F L +++  KG K
Sbjct: 793 STIINELCKVGDIN------KAFQLWNEMLYKGLK 821



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 172/391 (43%), Gaps = 39/391 (9%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           D + YTA IR     RNLD    +   M+   V+   + Y  L+ GLC+  RV+   E+ 
Sbjct: 194 DEYVYTAGIRAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVK 253

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             M E GI+ D   Y  L+ G     ++  A ++  D++   +   +   + ++ GL + 
Sbjct: 254 NSMVERGIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKR 313

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC-CAEMGRMDNFFKLLAQMEKLKFSVAADL 380
              DKA++                    L C   E+G + N F   A ++KL        
Sbjct: 314 GHIDKAFR--------------------LACHLGELGMVPNLFACNALIDKL-------- 345

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMR 439
                    K+ R   A  +F  +  +G     + Y IL+ +L + G +  AL +F +MR
Sbjct: 346 --------CKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMR 397

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              + V    ++  I  + +  +  +A    N+++E    PS A+Y+ L  GLC+ G++ 
Sbjct: 398 EKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLA 457

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           +AM L R+   N  SG   + +   I   C+ G  ++   + ++M      PNEV  + +
Sbjct: 458 SAMELHREMARNGVSGNV-YTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVM 516

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           I G C+ G + +A +++  + +R L  +  T
Sbjct: 517 IEGYCRVGNVRKAFQLYDQMVDRGLTPDNYT 547



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 208/476 (43%), Gaps = 62/476 (13%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           ++KG +     YN+L   YC           Q      ++G + EM+E      + L  P
Sbjct: 397 REKGIRVTVYPYNSLINGYC-----------QHDNFHQARGLLNEMVE------KGL-AP 438

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
              +Y+ +I  L  + +L + + +  EM ++ V  +V  + TLI G CK G +     LF
Sbjct: 439 SAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLF 498

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            +M ++ ++ +   + V+IEG    G V KA  L   +VD G   D   Y S+I  LC  
Sbjct: 499 DKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLT 558

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-------EKLKF 374
               KA +  +    + +  +  ++  L+    + GR+   + +  +M       + + F
Sbjct: 559 LGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISF 618

Query: 375 SVAA-------DLEK------------------FFEFLV---GKEERIMMALDVFEELKG 406
           +V         D EK                  F   ++    KEE I+ AL+ ++++  
Sbjct: 619 TVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKMIA 678

Query: 407 KGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G S +V  Y +L+  L + G +  A  L  +M       NS +++  +      G++ +
Sbjct: 679 DGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEK 738

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYAL 523
           A   H  I+E   + +   +N L KG CK G+I  A+ L+++   N  SG  P    Y+ 
Sbjct: 739 AKVLHATILE-GCLANTVTFNTLIKGFCKAGQIQGAIDLMQN---NTESGFFPDCISYST 794

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            I  +C+ G+  K  ++ NEM  +G  P+ V  + +I     HG  ++   +++++
Sbjct: 795 IINELCKVGDINKAFQLWNEMLYKGLKPDIVAYNILIRWCNIHGEFDKGLGIYSDM 850



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 115/490 (23%), Positives = 197/490 (40%), Gaps = 66/490 (13%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAE----------------- 186
           + KG K +   YN L Y L RNN    A +V   M  +G +A+                 
Sbjct: 222 ESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEEL 281

Query: 187 --MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
              LE+ + M      P V + + M+  L    ++D   R+   + +  +  ++ A   L
Sbjct: 282 EMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNAL 341

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LCK  R      LFR M   G+  +   Y +LI  L   G +  A  +   + + G 
Sbjct: 342 IDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGI 401

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           R  +  YNS+I G C+   F +A  L    V+  LAP  ++ +PL+      G + +  +
Sbjct: 402 RVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAME 461

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IYNILM 419
           L  +M   +  V+ ++  F   + G  K+  +  A  +F+++     S VP    +N+++
Sbjct: 462 LHREMA--RNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDS--SVVPNEVTFNVMI 517

Query: 420 GALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
                +G V+KA  L+ +M  RGL  +  +    I++ C       ++A E  + +    
Sbjct: 518 EGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGA--MKAKEFVDDLENNC 575

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYAL--------- 523
            V +  +   L  G CK G +         M  R    ++ S       AL         
Sbjct: 576 VVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKIS 635

Query: 524 --------------TILHVCR---SGEAEKIIEVLN---EMTQEGCPPNEVICSAIISGM 563
                          + H C      + E I++ LN   +M  +GC PN V  + +I+ +
Sbjct: 636 VLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHL 695

Query: 564 CKHGTLEEAR 573
           CK G L  A+
Sbjct: 696 CKSGYLSSAQ 705



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 91/220 (41%), Gaps = 34/220 (15%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +  +M+    KPD   +T MI V + E N+   L  W++M  D    +V+ Y  LI  LC
Sbjct: 637 LFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLC 696

Query: 250 KGGRVVRGHELFREMKEN----------------------------------GILIDRAI 275
           K G +     L  EM                                     G L +   
Sbjct: 697 KSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKAKVLHATILEGCLANTVT 756

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           +  LI+G    G++  A DL+++  +SG+  D   Y++II  LC+V   +KA++L+   +
Sbjct: 757 FNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINKAFQLWNEML 816

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
              L PD    N L+  C   G  D    + + M  LK++
Sbjct: 817 YKGLKPDIVAYNILIRWCNIHGEFDKGLGIYSDMVNLKYA 856



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 126/298 (42%), Gaps = 2/298 (0%)

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A D+L+  + SG        + I+  L +++QF  A  LF+  VQ     D       + 
Sbjct: 144 AADVLRLSLSSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCKFPLDEYVYTAGIR 203

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS 411
              E+  +D    LL +ME      +A       + + +  R++ A++V   +  +G  +
Sbjct: 204 AYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVA 263

Query: 412 VPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
             + Y  L+       E++ AL +   M  L+   +  S S  +    + G I +A    
Sbjct: 264 DEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLA 323

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
             + E+  VP++ A N L   LCK      A  L R  + N    P E  YA+ I  +C+
Sbjct: 324 CHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRG-MANRGLEPNEVTYAILIHSLCK 382

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
            G  +  + + + M ++G        +++I+G C+H    +AR +   + E+ L   A
Sbjct: 383 RGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSA 440



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/364 (19%), Positives = 150/364 (41%), Gaps = 11/364 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + +  ++ ++M      PD + Y ++I VL             ++++ + V  +  + 
Sbjct: 524 GNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSL 583

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+ G CK GR+   + ++ EM+  G+ +D   + V++   +      K   L +++ +
Sbjct: 584 TTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKE 643

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + D   +  +I    + +   +A   ++  + D  +P+  T   L+    + G + +
Sbjct: 644 KGVKPDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSS 703

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
              L  +M   +F   +     F   +  E  +  A  +   +     ++   +N L+  
Sbjct: 704 AQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKAKVLHATILEGCLANTVTFNTLIKG 763

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
             + G+++ A+ L           + +S+S  I    + GDI +A +  N+++     P 
Sbjct: 764 FCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKPD 823

Query: 482 VAAYNCLTKGLCKI-GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           + AYN L +  C I GE D  +         + S     KYA     V   G   K+IE 
Sbjct: 824 IVAYNILIR-WCNIHGEFDKGL--------GIYSDMVNLKYA-DDTPVNHKGSGRKVIEN 873

Query: 541 LNEM 544
           + ++
Sbjct: 874 MQQI 877


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 120/510 (23%), Positives = 219/510 (42%), Gaps = 58/510 (11%)

Query: 151 NFASYNALAYCLSRNN-------LFRAA--DQVP----------ELMDSQGRIAEMLEIL 191
           +F SYN +   L+R +       L+R    D+VP            +   GR  + L +L
Sbjct: 141 SFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRAGDALALL 200

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
             M R+ C PD   Y  +I  L A+  +     + +EM      ADV  +  L++GLC  
Sbjct: 201 RGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGL 260

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGL---------------------------- 283
           GRV     L   M   G +     YG L++GL                            
Sbjct: 261 GRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVI 320

Query: 284 ---VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
              + EGK+ +A +L + +   G   D+  Y+ ++ GLC++ +F  A ++ +   +   A
Sbjct: 321 RGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCA 380

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400
           P+  T + LL      G  D+   +L QM    FS+ +       + + K+ ++  A  +
Sbjct: 381 PNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRL 440

Query: 401 FEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
            +E+K +G    +  YN ++  L     +++A ++F  +    +  N ++++  I   + 
Sbjct: 441 VQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLR 500

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PT 517
           +G   E     ++++       V +YN L K LCK G +D +M L+ +    V  G  P 
Sbjct: 501 NGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEM---VTKGIKPN 557

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
            F Y + I  +C++G+    +E+  EM  +G  P+ V  + +I+G+CK G    A  +  
Sbjct: 558 NFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLE 617

Query: 578 NLRERKLLTEANTIVYDEILIEHMKKKTAD 607
            L    +    + + Y+ ++  H K +  D
Sbjct: 618 KLPNENV--HPDIVTYNILISWHCKVRLLD 645



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 164/374 (43%), Gaps = 35/374 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G++A   E+ E M    C PDV  Y+ ++  L       + +R+ +EM++     +++
Sbjct: 325 TEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIV 384

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TL+   C+ G       +  +M   G  ++   Y  +I  L  +GK+ +A  L++++
Sbjct: 385 TYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEM 444

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G + D+  YN++I  LC     ++A  +F   +++ +  +  T N L+      GR 
Sbjct: 445 KSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRW 504

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
               +L ++M                 L G +      LDV              YN L+
Sbjct: 505 QEGLRLASEM----------------LLHGCQ------LDVIS------------YNGLI 530

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            AL + G V +++ L  +M    ++ N+ S+++ I    ++G + +A E   +++     
Sbjct: 531 KALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLT 590

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P +  YN L  GLCK+G   AA+ L+   L N    P    Y + I   C+    +    
Sbjct: 591 PDIVTYNTLINGLCKVGWTHAALNLLEK-LPNENVHPDIVTYNILISWHCKVRLLDDAAM 649

Query: 540 VLNEMTQEGCPPNE 553
           +L++    G  PNE
Sbjct: 650 LLDKAISGGIVPNE 663



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/445 (23%), Positives = 189/445 (42%), Gaps = 52/445 (11%)

Query: 188 LEILEKM-RRNLCKPDVFAYTAMIRVLA-AERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           L +L++M RR    P   +Y  ++  LA A+ + DA L ++  M +D V      +    
Sbjct: 126 LHLLDQMPRRFAVSPSFRSYNVVLSTLARADCHADALL-LYRRMLRDRVPPTTFTFGVAA 184

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
             LC+ GR      L R M  +G + D  +Y  +I  LV +G V +A  LL +++  G  
Sbjct: 185 RALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCA 244

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
           AD+  +N ++ GLC + +  +A +L +  +     P   T   LL       + D    +
Sbjct: 245 ADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAM 304

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLE 424
           L ++ ++   +   L       +  E ++  A +++E +  KG    V  Y+ILM  L +
Sbjct: 305 LGRLPEVNVVM---LNTVIRGCL-TEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCK 360

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
           +G    A+ +  +M                                    E    P++  
Sbjct: 361 LGRFGSAVRMLDEME-----------------------------------EKGCAPNIVT 385

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y+ L    C+ G  D A  ++   L    S  ++  Y   I  +C+ G+ ++   ++ EM
Sbjct: 386 YSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQ-GYNGIIYALCKDGKLDQATRLVQEM 444

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
             +GC P+    + +I  +C +  +EEA  +F NL E  ++  AN I Y+ ++   ++  
Sbjct: 445 KSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVV--ANGITYNTLIHALLRNG 502

Query: 605 TADLVLSGLKFFGLESKLKAKGCKL 629
                  GL+   L S++   GC+L
Sbjct: 503 RWQ---EGLR---LASEMLLHGCQL 521



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 19/221 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIA------------------ 185
           K +G K +  +YN + Y L  N+L   A+ +   +  +G +A                  
Sbjct: 445 KSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRW 504

Query: 186 -EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E L +  +M  + C+ DV +Y  +I+ L  E N+D  + + EEM    ++ +  +Y  L
Sbjct: 505 QEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNML 564

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LCK G+V    EL +EM   G+  D   Y  LI GL   G    A +LL+ L +   
Sbjct: 565 INELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENV 624

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
             D+  YN +I   C+V+  D A  L +  +   + P+  T
Sbjct: 625 HPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERT 665



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 108/240 (45%), Gaps = 19/240 (7%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAE---------------MLEI 190
           KG+  N   YN + Y L ++     A ++ + M SQG   +               ++E 
Sbjct: 412 KGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEE 471

Query: 191 LEKMRRNLCKPDVFA----YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
            E + RNL +  V A    Y  +I  L         LR+  EM     + DV++Y  LI 
Sbjct: 472 AEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIK 531

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
            LCK G V R   L  EM   GI  +   Y +LI  L   GKV  A +L K++++ G   
Sbjct: 532 ALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTP 591

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D+  YN++I GLC+V     A  L E    +++ PD  T N L+    ++  +D+   LL
Sbjct: 592 DIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLL 651


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 203/469 (43%), Gaps = 36/469 (7%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           + +TP +  EV++  NNP LA KFF  +       H+F +Y+ L   LS      +A  V
Sbjct: 100 KTLTPSIAFEVVRGLNNPELALKFFQLSRVNLNLCHSFRTYSFLLRSLSEMGFHESAKAV 159

Query: 175 PELMDSQGRIAEMLEILEKMRRNLCKPD--VFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
            + M+  G                  PD  V  +       A + N+    R W     D
Sbjct: 160 YDCMNIDGH----------------SPDASVLGFLVSSATDAGKFNI---ARTW----VD 196

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            VE  ++ Y  L+  L +G +V      FRE        D   + +LI GL   GKV KA
Sbjct: 197 GVEFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKA 256

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLV 351
            +L  ++   G   D+  YN++I G CRV + D+ + L  E+  ++DL+PD  T   ++ 
Sbjct: 257 FELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIIS 316

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF-FEFLV---GKEERIMMALDVFEELKGK 407
              ++G+M+    L   M     S       F F  L+   GK   ++ A +++EE+   
Sbjct: 317 GYCKLGKMEKASILFNNM----ISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLL 372

Query: 408 GY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           G    +  +  L+      G+V+++L L+ ++   NL  N  +F+I      +   + EA
Sbjct: 373 GCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEA 432

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
                 +     V     YN +  G CK G +D A +++ + +      P +  Y + I+
Sbjct: 433 RGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAE-MEEKRCKPDKITYTILII 491

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
             C  G   + I + N M   GC P+ +  +++IS + K G   EA ++
Sbjct: 492 GHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLKAGMPNEAYRI 540



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 159/368 (43%), Gaps = 14/368 (3%)

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  L+  L + G       ++  M  +G   D ++ G L+      GK   A    +  
Sbjct: 139 TYSFLLRSLSEMGFHESAKAVYDCMNIDGHSPDASVLGFLVSSATDAGKFNIA----RTW 194

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           VD G    L +YN ++  L R  Q D+A   F   +      D  + N L+     +G++
Sbjct: 195 VD-GVEFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKV 253

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSS--VPIY 415
           D  F+L  +M    F  + D+  +   + G  +   +    D+ +EL  K   S  V  Y
Sbjct: 254 DKAFELFNEMRG--FGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTY 311

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             ++    ++G+++KA  LF  M    ++ N+ +F+I I    + GD++ A   + +++ 
Sbjct: 312 TSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLL 371

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
           +   P +  +  L  G C+ G+++ ++ L  + L      P E+ +A+    +C+     
Sbjct: 372 LGCPPDIITFTSLIDGHCRTGKVERSLKLWHE-LNARNLSPNEYTFAILTNALCKENRLH 430

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           +    L ++          + + +I G CK G ++EA  +   + E++   + + I Y  
Sbjct: 431 EARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKR--CKPDKITYTI 488

Query: 596 ILIEHMKK 603
           ++I H  K
Sbjct: 489 LIIGHCMK 496



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 88/193 (45%), Gaps = 3/193 (1%)

Query: 177 LMDSQGRIAEMLE---ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L++  G++ +M+    + E+M    C PD+  +T++I        ++  L++W E+    
Sbjct: 349 LINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARN 408

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  +   +  L   LCK  R+       R++K   I+    +Y  +I+G    G V +A 
Sbjct: 409 LSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEAN 468

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            +L ++ +   + D   Y  +I G C   +  +A  +F   +    APD  T+  L+ C 
Sbjct: 469 VILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCL 528

Query: 354 AEMGRMDNFFKLL 366
            + G  +  ++++
Sbjct: 529 LKAGMPNEAYRIM 541



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 69/156 (44%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++   L++  ++      P+ + +  +   L  E  L        ++K   + A    Y
Sbjct: 392 GKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMY 451

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I G CK G V   + +  EM+E     D+  Y +LI G   +G++ +A  +   ++ 
Sbjct: 452 NPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLG 511

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           +G   D     S+I  L +    ++AY++ ++  +D
Sbjct: 512 TGCAPDSITMTSLISCLLKAGMPNEAYRIMQIASED 547


>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 884

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 181/391 (46%), Gaps = 12/391 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR ++ L  L  M +N CKP +  ++ +I     E N+    +++E +++  +  +V  
Sbjct: 326 RGRTSDALGFLHLMIKNGCKPSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAM 385

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TL+ G  K   V + + L+ EM++ GI  D A + +L+ G    GK   + +L +D  
Sbjct: 386 YNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVAGNYKYGKEADSYELFRDWS 445

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            S    D  +Y+  + GLC   Q D+A +  E  ++  + P     N ++   +  G  D
Sbjct: 446 LSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFED 505

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI---- 414
           N  K    M  L F +          L+G  K+ R+  A D+  ++  KG   +P+    
Sbjct: 506 NAHKAYKIM--LMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKG---LPVNKVA 560

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           + +L+    ++G+   A  L+ +M    +  ++++FS  I    ++G + EA E  +++ 
Sbjct: 561 FTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMS 620

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           +   VP+   YN L  GLC  G++  A+ L R+ +      P  F   + I   C+ G  
Sbjct: 621 KKGFVPNNFVYNSLIHGLCNCGKLHEALKLERE-MRQKGLLPDIFTTNIIINGFCKEGRM 679

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
           +   +   EM   G  P+ V  + +I G CK
Sbjct: 680 KSAFDAFAEMHHIGVTPDTVTYNTLIGGYCK 710



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 107/465 (23%), Positives = 202/465 (43%), Gaps = 49/465 (10%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + E  +I E ++     P+V  Y  ++      R++     ++EEM+   +  D  
Sbjct: 360 NEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGA 419

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            +  L+ G  K G+    +ELFR+   + ++ D ++Y V + GL   G++ +A   L+D+
Sbjct: 420 TFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDM 479

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           ++ G    +  +NS+I    R    D A+K +++ +   L P  ST + +L+  ++ GR+
Sbjct: 480 LEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRL 539

Query: 360 DNFFKLLAQM-------EKLKFSV--------------------------AADLEKFFEF 386
                LL +M        K+ F+V                            D   F  F
Sbjct: 540 QEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAF 599

Query: 387 LVG--KEERIMMALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGL 441
           + G  K   +  A + F E+  KG+  VP   +YN L+  L   G++ +AL L  +MR  
Sbjct: 600 IDGLSKAGLVEEAYEAFSEMSKKGF--VPNNFVYNSLIHGLCNCGKLHEALKLEREMRQK 657

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            L  +  + +I I    + G +  A +   ++  +   P    YN L  G CK+ ++ +A
Sbjct: 658 GLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSA 717

Query: 502 MMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
              +       ASG  P    Y + I   C S +  + + +L+E+   G  PN V  + +
Sbjct: 718 DEFLNKM---YASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIAVGVVPNTVTYNTM 774

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           ++ +C    L+ A  +   L +   +     +V   +L+ H  K+
Sbjct: 775 MNAVCTD-MLDRAMVLTAKLLKMAFVPN---VVTTNVLLSHFCKQ 815



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 128/584 (21%), Positives = 225/584 (38%), Gaps = 55/584 (9%)

Query: 35  NRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITD 94
           N Q   +  S S P  S  +  +   P +L      S PS+ ++F      SP     ++
Sbjct: 26  NYQQSLHSKSKSLPFSSLIYLPKTLSPCFLGAHSYHSQPSNSQSFDYFYQFSPFCHSNSN 85

Query: 95  AFRKNQFQWGPQVVTELSKL-------------RRVTPDLVAEVLKVENNPTLASKFFHW 141
                       +V ELSKL             ++  P  + +++K+  +   A  FF  
Sbjct: 86  YLSSLNSNERRILVVELSKLIKQGKGYILKSFSQKFCPFFLVKIMKLLESRQSAFAFFKL 145

Query: 142 AGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           A +      N +     + C++ + L                 AE L++L +        
Sbjct: 146 AFQ------NDSDATVHSCCIAAHIL----------------AAESLQLLAQ-------- 175

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           DV ++  +IR + A R+      +W    K   E+D     TL+ G           E+ 
Sbjct: 176 DVISW--VIRRIGASRSAHLVEFMWANHHK--YESDFSILNTLMRGFMNSEMAYESLEIL 231

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             M+E G+    +   +L   L+  G  G    LL+ ++  G R     +N +I   C+ 
Sbjct: 232 SRMREVGVRPSSSAISILFRLLLRVGDYGSVWKLLRGMIRDGPRPCNHNFNIMILCFCQK 291

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
                A  L  V  +    PD    N L+      GR  +    L  M  +K      L 
Sbjct: 292 GYLRVAESLLFVMPKFCCEPDVYAYNILINAYRIRGRTSDALGFLHLM--IKNGCKPSLI 349

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
            F   +     E  ++ A  +FE ++  G S +V +YN LM    +  +V +A  L+ +M
Sbjct: 350 TFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEM 409

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
           R   +  +  +F+I +  + + G   ++ E        S VP  + Y+    GLC  G++
Sbjct: 410 RDKGIAPDGATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQL 469

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D AM  + D L      P+   +   I    R+G  +   +    M   G  P+   CS+
Sbjct: 470 DEAMQFLEDMLEK-GMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSS 528

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
           ++ G+ K G L+EAR +   + ++ L    N + +  +L  + K
Sbjct: 529 MLLGLSKKGRLQEARDLLYKMIDKGL--PVNKVAFTVLLDGYFK 570



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 154/363 (42%), Gaps = 13/363 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E ++ LE M      P V A+ ++I   +     D   + ++ M    +       
Sbjct: 467 GQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTC 526

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            ++++GL K GR+    +L  +M + G+ +++  + VL++G    G    A  L  ++  
Sbjct: 527 SSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEA 586

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   +++ I GL +    ++AY+ F    +    P+    N L+      G++  
Sbjct: 587 RGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHE 646

Query: 362 FFKLLAQMEKLK-----FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-Y 415
             KL  +M +       F+    +  F      KE R+  A D F E+   G +   + Y
Sbjct: 647 ALKLEREMRQKGLLPDIFTTNIIINGF-----CKEGRMKSAFDAFAEMHHIGVTPDTVTY 701

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+G   ++ ++  A     KM     + +  +++I IQ    S  I  A    +++I 
Sbjct: 702 NTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIA 761

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
           +  VP+   YN +   +C    +D AM+L    L  +A  P      + + H C+ G  E
Sbjct: 762 VGVVPNTVTYNTMMNAVCT-DMLDRAMVLTAKLL-KMAFVPNVVTTNVLLSHFCKQGMPE 819

Query: 536 KII 538
           K +
Sbjct: 820 KAL 822



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 127/271 (46%), Gaps = 12/271 (4%)

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           +A+  L+ G  K G     H L+ EM+  GI  D   +   I+GL   G V +A +   +
Sbjct: 559 VAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSE 618

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +   G+  +  +YNS+I GLC   +  +A KL     Q  L PD  T N ++    + GR
Sbjct: 619 MSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGR 678

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS-----VP 413
           M + F   A+M  +   V  D   +   L+G   +++  +   +E   K Y+S     + 
Sbjct: 679 MKSAFDAFAEMHHI--GVTPDTVTY-NTLIGGYCKVLDMVSA-DEFLNKMYASGWDPDIT 734

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE-ACECHNK 472
            YNI +       ++ +A+ +  ++  + +  N+++++  +  +    D+L+ A     K
Sbjct: 735 TYNIRIQGFCSSQKISRAVTMLDELIAVGVVPNTVTYNTMM--NAVCTDMLDRAMVLTAK 792

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
           +++M+ VP+V   N L    CK G  + A++
Sbjct: 793 LLKMAFVPNVVTTNVLLSHFCKQGMPEKALI 823



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 3/198 (1%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +   G + E  E   +M +    P+ F Y ++I  L     L   L++  EM++  +  D
Sbjct: 603 LSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPD 662

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           +     +I G CK GR+    + F EM   G+  D   Y  LI G      +  A + L 
Sbjct: 663 IFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLN 722

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-VCCAEM 356
            +  SG+  D+  YN  I G C  ++  +A  + +  +   + P+  T N ++   C +M
Sbjct: 723 KMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIAVGVVPNTVTYNTMMNAVCTDM 782

Query: 357 GRMDNFFKLLAQMEKLKF 374
             +D    L A++ K+ F
Sbjct: 783 --LDRAMVLTAKLLKMAF 798


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 115/472 (24%), Positives = 213/472 (45%), Gaps = 31/472 (6%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQV 174
           + PDLV +V+    +P  A + F WAGKQ  + HN  + N L   Y  +R          
Sbjct: 67  LVPDLVGKVIHRIPDPNTAWEVFQWAGKQSKFTHNRFTCNNLLSVYVKAR---------- 116

Query: 175 PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
                   R+ +     +   +N+ +PD  +Y  ++       ++   L ++ EMK   +
Sbjct: 117 --------RVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGI 168

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI-YGVLIEGLVGEGKVGKAC 293
            A + ++  ++ GLC GG++    E+F++M  +GI     I Y ++I+GL    KV KA 
Sbjct: 169 -AVLRSHNIVLRGLCSGGKISMAWEVFKDM--SGIFSPNLISYTIMIDGLCKSRKVDKAI 225

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            L K +VD     D+  Y ++I GL + ++  +AY LFE        P   T N ++   
Sbjct: 226 TLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGL 285

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS- 410
            + GR++N   L   M + +  +  D+  +   + G     R   A +++EE+   G S 
Sbjct: 286 CKCGRIENALTLYDDMVR-EPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSP 344

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL-EVNSLSFSIAIQCHVESGDILEACEC 469
            V  YN L+  L + G   KA+ +F KM   N+ + N +++++ I    +   + +A + 
Sbjct: 345 DVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKL 404

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
             ++   S +P    +  + + LCK   ID A  L  + +G     P    +   +   C
Sbjct: 405 AKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELF-ESIGKTCK-PDSVLFNTMLAGYC 462

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           +    +   ++ + M   GC P     +A+++G C+ G   +A  ++  + E
Sbjct: 463 KITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIE 514



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 132/292 (45%), Gaps = 3/292 (1%)

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N+++    + ++ + A+  F+  +++   PD  + N L+    + G +     L  +M+ 
Sbjct: 106 NNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKD 165

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKA 431
              +V          L     +I MA +VF+++ G    ++  Y I++  L +  +V KA
Sbjct: 166 SGIAVLRSHNIVLRGLCSGG-KISMAWEVFKDMSGIFSPNLISYTIMIDGLCKSRKVDKA 224

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
           + LF +M    +  + +++   I    +   + EA +   +       P+V  YN +  G
Sbjct: 225 ITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDG 284

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
           LCK G I+ A+ L  D +      P  F Y+  I  +  S   EK  E+  EM   GC P
Sbjct: 285 LCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSP 344

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           + V  + ++ G+CK G  ++A ++F  +     + + N I Y  +LI+   K
Sbjct: 345 DVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGN-VCDPNVITY-TVLIDRFCK 394


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 110/474 (23%), Positives = 216/474 (45%), Gaps = 26/474 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNL---------------FRAADQV-PELMDSQGR---I 184
           ++ G+  N  SYN L + L ++                 FR + Q    LM   G+   I
Sbjct: 182 REFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDI 241

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
             ++ +L++M     KP+V+ +T  IRVL     ++    + + M  +    DV+ Y  L
Sbjct: 242 ESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVL 301

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC   ++    E+F +MK      DR  Y  L++       +        ++   G+
Sbjct: 302 IDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGH 361

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  +  ++  LC+   F +A+   +V     + P+  T N L+     + R+D+  +
Sbjct: 362 VPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALE 421

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
           +   ME L     A     F    GK    + AL+ FE++K KG + ++   N  + +L 
Sbjct: 422 IFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLA 481

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G  ++A  +F  ++ + L  +S+++++ ++C+ + G+I EA +  ++++E    P V 
Sbjct: 482 KAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVI 541

Query: 484 AYNCLTKGLCKIGEIDAAM-MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             N L   L K   +D A  M +R  +  +   PT   Y   +  + ++G+ ++ IE+  
Sbjct: 542 VVNSLINTLYKADRVDEAWKMFMR--MKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFE 599

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIVY 593
            M Q+GCPPN +  + +   +CK+  +  A K+   + +   + +    NTI++
Sbjct: 600 GMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIF 653



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 212/496 (42%), Gaps = 63/496 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQ----------VPELMDSQ---------GRI 184
           K KG   N  + NA  Y L++    R A Q          VP+ +            G I
Sbjct: 462 KTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEI 521

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E +++L +M  N C+PDV    ++I  L     +D   +++  MK+  ++  V+ Y TL
Sbjct: 522 DEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTL 581

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + GL K G++    ELF  M + G   +   +  L + L    +V  A  +L  ++D G 
Sbjct: 582 LAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGC 641

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  YN+II GL +  Q  +A   F   ++  + PDF T+  LL    + G +++ +K
Sbjct: 642 VPDVFTYNTIIFGLVKNGQVKEAMCFFH-QMKKLVYPDFVTLCTLLPGVVKAGLIEDAYK 700

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGK---EERIMMALDVFEELKGKG------------- 408
           ++A          A+L  F+E L+G    E  I  A+   E L   G             
Sbjct: 701 IIANFLYSCADQPANL--FWEDLMGSILAEAGIDNAVSFSERLVANGICRDGDSILVPII 758

Query: 409 -YS------------------------SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
            YS                         +P YN+L+G LLE   ++ A  +F +++    
Sbjct: 759 RYSFKHNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGC 818

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             +  +++  +  + +SG I E  E + ++      P+   +N +  GL K G +D A+ 
Sbjct: 819 IPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALD 878

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L  D + +    PT   Y   I  + +SG   +  ++   M+  GC PN  I + +I+G 
Sbjct: 879 LYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGF 938

Query: 564 CKHGTLEEARKVFTNL 579
            K G  + A  +F  +
Sbjct: 939 GKAGEADAACALFKRM 954



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 189/422 (44%), Gaps = 32/422 (7%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
           L KMR      + ++Y  +I +L   R     + V+  M  D     +  Y +L++GL K
Sbjct: 178 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGK 237

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
              +     L +EM+  G+  +   + + I  L   GK+ +A ++LK + D G   D+  
Sbjct: 238 RRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVT 297

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           Y  +I  LC  ++ D A ++F         PD  T   LL   ++   +D+  +  ++ME
Sbjct: 298 YTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEME 357

Query: 371 K-------LKFSVAADL--------EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIY 415
           K       + F++  D         E F +  V +++ I+               ++  Y
Sbjct: 358 KDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGIL--------------PNLHTY 403

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+  LL +  +  AL +F  M  L ++  + ++ + I  + +SGD + A E   K+  
Sbjct: 404 NTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKT 463

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P++ A N     L K G    A  +    L ++   P    Y + +    + GE +
Sbjct: 464 KGIAPNIVACNASLYSLAKAGRDREAKQIFYG-LKDIGLVPDSVTYNMMMKCYSKVGEID 522

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           + I++L+EM +  C P+ ++ +++I+ + K   ++EA K+F  ++E KL  +   + Y+ 
Sbjct: 523 EAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKL--KPTVVTYNT 580

Query: 596 IL 597
           +L
Sbjct: 581 LL 582



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 117/512 (22%), Positives = 196/512 (38%), Gaps = 96/512 (18%)

Query: 145  QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            QKG   N  ++N L  CL +N+                 +   L++L KM    C PDVF
Sbjct: 603  QKGCPPNTITFNTLFDCLCKND----------------EVTLALKMLFKMMDMGCVPDVF 646

Query: 205  AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE----- 259
             Y  +I  L     +   +  + +MKK LV  D +   TL+ G+ K G +   ++     
Sbjct: 647  TYNTIIFGLVKNGQVKEAMCFFHQMKK-LVYPDFVTLCTLLPGVVKAGLIEDAYKIIANF 705

Query: 260  ----------LFREMKENGIL----IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
                      LF E     IL    ID A+     E LV  G       +L  ++   ++
Sbjct: 706  LYSCADQPANLFWEDLMGSILAEAGIDNAV--SFSERLVANGICRDGDSILVPIIRYSFK 763

Query: 306  ---------------ADLGI------YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
                            DLG+      YN +IGGL      + A  +F         PD +
Sbjct: 764  HNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVA 823

Query: 345  TVNPLLVCCAEMGRMDNFFKLLAQMEKLKF------------------SVAADLEKFFEF 386
            T N LL    + G++D  F++  +M   +                   +V   L+ +++ 
Sbjct: 824  TYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDL 883

Query: 387  L------------------VGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGE 427
            +                  + K  R+  A  +FE +   G   +  IYNIL+    + GE
Sbjct: 884  MSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGE 943

Query: 428  VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
               A  LF +M    +  +  ++S+ + C    G + E      ++ E    P V  YN 
Sbjct: 944  ADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNL 1003

Query: 488  LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
            +  GL K   ++ A++L  +   +    P  + Y   IL++  +G  E+  ++ NE+ + 
Sbjct: 1004 IINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRA 1063

Query: 548  GCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            G  PN    +A+I G    G  E A  V+  +
Sbjct: 1064 GLEPNVFTFNALIRGYSLSGKPEHAYAVYQTM 1095



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 150/377 (39%), Gaps = 53/377 (14%)

Query: 129  ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV----------PE-- 176
             NN + A   F    K  G +    +YN L   L   ++   A  V          P+  
Sbjct: 764  HNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVA 823

Query: 177  ----LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
                L+D+    G+I E+ EI ++M  + C+P+   +  +I  L    N+D  L ++ ++
Sbjct: 824  TYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDL 883

Query: 230  KKDL-VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
              D         Y  LI GL K GR+    +LF  M + G   + AIY +LI G    G+
Sbjct: 884  MSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGE 943

Query: 289  VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
               AC L K +V  G R DL  Y+ ++  LC V + D+    F    +  L PD    N 
Sbjct: 944  ADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNL 1003

Query: 349  LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
            ++    +  R++    L  +M+K +  +  DL                            
Sbjct: 1004 IINGLGKFHRLEEALVLFNEMKKSR-GITPDLYT-------------------------- 1036

Query: 409  YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
                  YN L+  L   G V++A  ++ +++   LE N  +F+  I+ +  SG    A  
Sbjct: 1037 ------YNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYA 1090

Query: 469  CHNKIIEMSQVPSVAAY 485
             +  ++     P+   Y
Sbjct: 1091 VYQTMVTGGFSPNTGTY 1107



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/390 (20%), Positives = 181/390 (46%), Gaps = 16/390 (4%)

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           M+  L  +  ++    V++ M+K +++ D   Y+T+   L   G + +     R+M+E G
Sbjct: 126 MLEALRVDGKIEEMAYVFDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKMREFG 185

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
            +++   Y  LI  L+      +A ++ + ++  G+R  L  Y+S++ GL + +  +   
Sbjct: 186 FVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVM 245

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-------LKFSVAADLE 381
            L +      L P+  T    +      G+++  +++L +M+        + ++V  D  
Sbjct: 246 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLID-- 303

Query: 382 KFFEFLVGKEERIMMALDVFEELK-GKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
                 +    ++  A +VF ++K G+       Y  L+    +  ++      + +M  
Sbjct: 304 -----ALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEK 358

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
                + ++F+I +    ++G+  EA    + + +   +P++  YN L  GL ++  +D 
Sbjct: 359 DGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDD 418

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A+ +  D + ++   PT + Y + I +  +SG++   +E   +M  +G  PN V C+A +
Sbjct: 419 ALEIF-DNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASL 477

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             + K G   EA+++F  L++  L+ ++ T
Sbjct: 478 YSLAKAGRDREAKQIFYGLKDIGLVPDSVT 507



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 182  GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMA 240
            GR+ E L    +++ +   PDV  Y  +I  L     L+  L ++ EMKK   +  D+  
Sbjct: 977  GRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYT 1036

Query: 241  YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
            Y +LI+ L   G V    +++ E++  G+  +   +  LI G    GK   A  + + +V
Sbjct: 1037 YNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMV 1096

Query: 301  DSGYRADLGIYNSI 314
              G+  + G Y  +
Sbjct: 1097 TGGFSPNTGTYEQL 1110


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 120/539 (22%), Positives = 238/539 (44%), Gaps = 75/539 (13%)

Query: 98  KNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNA 157
           + +  W   + +EL   R  T  +   ++   ++P L  +FF++ G  +G+ H+ AS+  
Sbjct: 50  RGKRSWEIALSSELVSRRLKTIHVEEILIGTIDDPKLGLRFFNFLGLHRGFDHSTASFCI 109

Query: 158 LAYCLSRNNLFRAADQV-----------PELMDS-------------------------Q 181
           L + L + NLF  A  +            E+ D+                          
Sbjct: 110 LIHALVQANLFWPASSLLQTLLLRALKPSEVFDALFSCYEKCKLSSSSSFDLLIQHYVRS 169

Query: 182 GRIAEMLEILEKMRRNLCK-PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            R+ + + + + M   +   P+V   +A++  L   R+    + ++++M    +  DV  
Sbjct: 170 RRVLDGVLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYI 229

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I  LC+   + R  E+  +M+  G  ++   Y VLI+GL  + KV +A  + KDL 
Sbjct: 230 YTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLA 289

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
               + D+  Y +++ GLC+V++F+   ++ +  ++   +P  + V+ L+    + G+++
Sbjct: 290 GKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVE 349

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
               L+ ++ +   S                                   ++ +YN L+ 
Sbjct: 350 EALNLVKRVAEFGVS----------------------------------PNIFVYNALID 375

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           +L +     +A  LF +M  + L  N +++SI I      G +  A     ++I+M   P
Sbjct: 376 SLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKP 435

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           SV  YN L  G CK G+I AA  L+ + + N    PT   Y   +   C  G+  K + +
Sbjct: 436 SVYPYNSLINGHCKFGDISAAESLMAEMI-NKKLEPTVVTYTSLMGGYCSKGKINKALRL 494

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
            +EMT +G  P+    + ++SG+ + G + +A K+FT + E  +  + N + Y+ ++IE
Sbjct: 495 YHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNV--KPNRVTYN-VMIE 550



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 127/485 (26%), Positives = 216/485 (44%), Gaps = 65/485 (13%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE--MKKDL----VEADVMAYV 242
           E++ +M    C  ++  Y  +I  L  ++      +VWE   +KKDL    ++ DV+ Y 
Sbjct: 248 EMIVQMEATGCDVNIVPYNVLIDGLCKKQ------KVWEAVGIKKDLAGKELKPDVVTYC 301

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TL+ GLCK      G E+  EM         A    L+EGL   GKV +A +L+K + + 
Sbjct: 302 TLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEF 361

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   ++ +YN++I  LC+ + FD+A  LF+   +  L P+  T + L+      G++D  
Sbjct: 362 GVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTA 421

Query: 363 FKLLAQMEKL-----------------KFSVAADLEKFFEFLVGK--------------- 390
              L +M  +                 KF   +  E     ++ K               
Sbjct: 422 LSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGG 481

Query: 391 ---EERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
              + +I  AL ++ E+ GKG   S+  +  L+  L   G ++ A+ LF +M   N++ N
Sbjct: 482 YCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPN 541

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
            +++++ I+ + E G++ +A E  N++IE   VP   +Y  L  GLC  G+   A + V 
Sbjct: 542 RVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFV- 600

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
           D L        E  Y   +   CR G+ E+ + V  +M   G   + V    +I G  KH
Sbjct: 601 DGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKH 660

Query: 567 GTLEEARKVFTNL----RERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKL 622
               + RKVF  L     +R L  + + ++Y  ++    K KT D      + FG+   +
Sbjct: 661 ----KDRKVFLGLLKEMHDRGL--KPDDVIYTSMI--DAKSKTGDFK----EAFGIWDLM 708

Query: 623 KAKGC 627
             +GC
Sbjct: 709 INEGC 713



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 194/444 (43%), Gaps = 51/444 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I+    ++ +M     +P V  YT+++    ++  ++  LR++ EM    +   +  +
Sbjct: 451 GDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTF 510

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+ GL + G +    +LF EM E  +  +R  Y V+IEG   EG + KA + L ++++
Sbjct: 511 TTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIE 570

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   Y  +I GLC   Q  +A    +   + +   +      LL      G+++ 
Sbjct: 571 KGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEE 630

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG----KEERIMMALDVFEELKGKG-------YS 410
              +   M  L+  V  DL  +   + G    K+ ++ + L   +E+  +G       Y+
Sbjct: 631 ALSVCQDM-GLR-GVDLDLVCYGVLIDGSLKHKDRKVFLGL--LKEMHDRGLKPDDVIYT 686

Query: 411 S--------------------------VP---IYNILMGALLEIGEVKKALYLFGKMRGL 441
           S                          VP    Y  ++  L + G V +A  L  KMR  
Sbjct: 687 SMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPG 746

Query: 442 NLEVNSLSFSIAIQCHVES-GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
           N   N +++   +    +  GD+ +A E HN I++   + + A YN L +G C+ G ++ 
Sbjct: 747 NSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILK-GLLANTATYNMLIRGFCRQGRMEE 805

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A  L+   +G+  S P    Y   I  +CR  + +K IE+ N MT++G  P+ V  + +I
Sbjct: 806 ASELITRMIGDGVS-PDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLI 864

Query: 561 SGMCKHGTLEEARKVFTNLRERKL 584
            G C  G + +A    T LR   L
Sbjct: 865 HGCCVAGEMGKA----TELRNEML 884



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 21/221 (9%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEML---------------- 188
            +G K +   Y ++    S+   F+ A  + +LM ++G +   +                
Sbjct: 675 DRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVN 734

Query: 189 --EIL-EKMRRNLCKPDVFAYTAMIRVLA-AERNLDACLRVWEEMKKDLVEADVMAYVTL 244
             EIL  KMR     P+   Y   + +L     ++   + +   + K L+ A+   Y  L
Sbjct: 735 EAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLL-ANTATYNML 793

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G C+ GR+    EL   M  +G+  D   Y  +I  L     V KA +L   + + G 
Sbjct: 794 IRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGI 853

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           R D   YN++I G C   +  KA +L    ++  L P+  T
Sbjct: 854 RPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTET 894


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 184/380 (48%), Gaps = 17/380 (4%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           L DS G++ + +E+L++M +  C PDV  YT +I     +  +   +++ +EM+      
Sbjct: 214 LCDS-GKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTP 272

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           DV+ Y  L+ G+CK GR+    +   +M  +G   +   + +++  +   G+   A  LL
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            D++  G+   +  +N +I  LCR     +A  + E   +    P+  + NPLL    + 
Sbjct: 333 ADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKE 392

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI 414
            +MD   + L +M  +      D+  +   L    K+ ++  A+++  +L  KG S V I
Sbjct: 393 KKMDRAIEYLERM--VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLI 450

Query: 415 -YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN ++  L + G+  KA+ L  +MR  +L+ +++++S  +      G + EA +  ++ 
Sbjct: 451 TYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEF 510

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHV 528
             M   P+   +N +  GLCK  + D A+     M+ R C       PTE  Y + I  +
Sbjct: 511 ERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGC------KPTETSYTILIEGL 564

Query: 529 CRSGEAEKIIEVLNEMTQEG 548
              G A++ +E+LNE+  +G
Sbjct: 565 AYEGMAKEALELLNELCNKG 584



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 185/411 (45%), Gaps = 9/411 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I   L +L++M      PDV  Y  ++R L     L   + V + M +     DV+ Y
Sbjct: 186 GEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITY 242

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI   C+   V +  +L  EM++ G   D   Y VL+ G+  EG++ +A   L D+  
Sbjct: 243 TILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS 302

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           SG + ++  +N I+  +C   ++  A KL    ++   +P   T N L+      G +  
Sbjct: 303 SGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGR 362

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
              +L +M   K     +   +   L G  KE+++  A++  E +  +G Y  +  YN +
Sbjct: 363 AIDILEKMP--KHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTM 420

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + AL + G+V+ A+ +  ++         ++++  I    ++G   +A +  +++     
Sbjct: 421 LTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDL 480

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P    Y+ L  GL + G++D A+    +    +   P    +   +L +C++ + ++ I
Sbjct: 481 KPDTITYSSLVGGLSREGKVDEAIKFFHE-FERMGVRPNAVTFNSIMLGLCKTRQTDRAI 539

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           + L  M   GC P E   + +I G+   G  +EA ++   L  + L+  ++
Sbjct: 540 DFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGLMKRSS 590



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 102/448 (22%), Positives = 189/448 (42%), Gaps = 13/448 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E  + LE M  +   PD+   T +IR            ++ E ++      DV+ Y
Sbjct: 116 GELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITY 175

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I G CK G +     +   M    +  D   Y  ++  L   GK+ +A ++L  ++ 
Sbjct: 176 NVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQ 232

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                D+  Y  +I   CR     +A KL +        PD  T N L+    + GR+D 
Sbjct: 233 RDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDE 292

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
             K L  M                  +    R M A  +  ++  KG+S SV  +NIL+ 
Sbjct: 293 AIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN 352

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L   G + +A+ +  KM     + NSLS++  +    +   +  A E   +++     P
Sbjct: 353 FLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYP 412

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            +  YN +   LCK G+++ A+ ++   L +    P    Y   I  + ++G+  K I++
Sbjct: 413 DIVTYNTMLTALCKDGKVEDAVEILNQ-LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKL 471

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           L+EM  +   P+ +  S+++ G+ + G ++EA K F      ++    N + ++ I++  
Sbjct: 472 LDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEF--ERMGVRPNAVTFNSIMLGL 529

Query: 601 MKKKTADLVLSGLKFFGLESKLKAKGCK 628
            K +  D  +  L +      +  +GCK
Sbjct: 530 CKTRQTDRAIDFLVY------MINRGCK 551



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 16/225 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           +KG+  +  ++N L   L R                +G +   ++ILEKM ++ C+P+  
Sbjct: 337 RKGFSPSVVTFNILINFLCR----------------KGLLGRAIDILEKMPKHGCQPNSL 380

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
           +Y  ++     E+ +D  +   E M       D++ Y T++  LCK G+V    E+  ++
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQL 440

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              G       Y  +I+GL   GK GKA  LL ++     + D   Y+S++GGL R  + 
Sbjct: 441 SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKV 500

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
           D+A K F    +  + P+  T N +++   +  + D     L  M
Sbjct: 501 DEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYM 545



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 139/312 (44%), Gaps = 15/312 (4%)

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
           L R  + ++ +K  E  V     PD      L+     MG+     K+L  +E       
Sbjct: 112 LVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLE--GSGAV 169

Query: 378 ADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLF 435
            D+  +   + G  K   I  AL V + +       V  YN ++ +L + G++K+A+ + 
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMSVS--PDVVTYNTILRSLCDSGKLKQAMEVL 227

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M   +   + ++++I I+       + +A +  +++ +    P V  YN L  G+CK 
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKE 287

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G +D A+  + D + +    P    + + +  +C +G      ++L +M ++G  P+ V 
Sbjct: 288 GRLDEAIKFLND-MPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVT 346

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKF 615
            + +I+ +C+ G L  A  +   + +     + N++ Y+ +L    K+K  D  +  L+ 
Sbjct: 347 FNILINFLCRKGLLGRAIDILEKMPKHG--CQPNSLSYNPLLHGFCKEKKMDRAIEYLE- 403

Query: 616 FGLESKLKAKGC 627
                ++ ++GC
Sbjct: 404 -----RMVSRGC 410


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 201/438 (45%), Gaps = 11/438 (2%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           + E MR+ +  PDV+ ++  I        ++  ++++ +M+K  V  +V+ Y  LI GLC
Sbjct: 234 VFETMRQGV-SPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLC 292

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K G +        +M ++G+      Y VLI GL+   K  +A  +LK+ ++ G+  +  
Sbjct: 293 KHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEV 352

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
           +YN++I G C++     A ++    V   + P+  T+N ++    ++G+M+    +L +M
Sbjct: 353 VYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEM 412

Query: 370 EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEV 428
               FS+           +    R   AL    E+  +    +  +   L+G L + G+ 
Sbjct: 413 LSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKH 472

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
             A+ L+ ++       N ++ +  I    ++G++ EA     K++E   V     YN L
Sbjct: 473 SDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTL 532

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
             G CK G+++    L R  +      P  F Y L I  +CR G+ ++ + + NE     
Sbjct: 533 ISGCCKEGKVEEGFKL-RGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRD 591

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADL 608
             PN      +I G CK   +EE  K+FT L  + L  E N++VY+ ++  + +      
Sbjct: 592 LVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNL--ELNSVVYNTLIRAYCRNGNT-- 647

Query: 609 VLSGLKFFGLESKLKAKG 626
               ++ F L   +++KG
Sbjct: 648 ----VEAFKLHDDMRSKG 661



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 113/471 (23%), Positives = 211/471 (44%), Gaps = 43/471 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ + +++   M +    P+V  Y  +I  L    NLD   R  E+M KD V A ++ Y
Sbjct: 260 GKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITY 319

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GL K  +    + + +E  E G   +  +Y  LI+G    G +G A  +  D+V 
Sbjct: 320 SVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVS 379

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   +    NSII G C++ Q ++A  + E  +    + +      ++       R ++
Sbjct: 380 KGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFES 439

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGY-SSVPIYNI 417
             + L +M  L  ++  + +     LVG   KE +   A++++  L  KG+ +++   N 
Sbjct: 440 ALRFLREM--LLRNMRPN-DGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNA 496

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L + G +++A+ L  KM      ++ ++++  I    + G + E  +   ++++  
Sbjct: 497 LIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQG 556

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMML-----VRDCLGNVAS----------------GP 516
             P    YN L  G+C+IG++D A+ L      RD + NV +                G 
Sbjct: 557 IEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGE 616

Query: 517 TEFKYALT-------------ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
             F   LT             I   CR+G   +  ++ ++M  +G PP     S++I GM
Sbjct: 617 KLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGM 676

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK 614
           C  G +E+A+ +   +R+  LL   N + Y  ++  + K    D V++ L+
Sbjct: 677 CNIGRMEDAKCLIDEMRKEGLL--PNVVCYTALIGGYCKLGQMDKVVNVLQ 725



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 106/455 (23%), Positives = 205/455 (45%), Gaps = 28/455 (6%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           +KG+  N   YN L   YC                    G + + L I   M      P+
Sbjct: 344 EKGFTPNEVVYNTLIDGYC------------------KMGNLGDALRIRGDMVSKGINPN 385

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
                ++I+       ++    + EEM       +  A+ T+I  LC   R        R
Sbjct: 386 SVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLR 445

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EM    +  +  +   L+ GL  EGK   A +L   L++ G+ A+L   N++I GLC+  
Sbjct: 446 EMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTG 505

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
              +A +L +  ++     D  T N L+  C + G+++  FKL  +M  +K  +  D   
Sbjct: 506 NMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEM--VKQGIEPDTFT 563

Query: 383 FFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMR 439
           +   + G  +  ++  A++++ E K +    +V  Y +++    +  ++++   LF ++ 
Sbjct: 564 YNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELL 623

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
             NLE+NS+ ++  I+ +  +G+ +EA + H+ +      P+ A Y+ L  G+C IG ++
Sbjct: 624 TQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRME 683

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A  L+ D +      P    Y   I   C+ G+ +K++ VL EM+     PN++  + +
Sbjct: 684 DAKCLI-DEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVM 742

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           I G  K G ++ A K+   +  + ++   +T+ Y+
Sbjct: 743 IDGYSKSGDMKTAAKLLHEMVGKGIV--PDTVTYN 775



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 185/431 (42%), Gaps = 51/431 (11%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            +G+  N  ++  + + L  N+ F +A                L  L +M     +P+  
Sbjct: 414 SRGFSINPGAFTTIIHWLCMNSRFESA----------------LRFLREMLLRNMRPNDG 457

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
             T ++  L  E      + +W  + +    A+++    LI GLCK G +     L ++M
Sbjct: 458 LLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKM 517

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            E G ++D+  Y  LI G   EGKV +   L  ++V  G   D   YN +I G+CR+ + 
Sbjct: 518 LERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKL 577

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           D+A  L+      DL P+  T   ++    +  +++   KL  ++      +  +LE   
Sbjct: 578 DEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTEL------LTQNLE--- 628

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                                    +SV +YN L+ A    G   +A  L   MR   + 
Sbjct: 629 ------------------------LNSV-VYNTLIRAYCRNGNTVEAFKLHDDMRSKGIP 663

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
             + ++S  I      G + +A    +++ +   +P+V  Y  L  G CK+G++D  + +
Sbjct: 664 PTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNV 723

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
           +++ + +    P +  Y + I    +SG+ +   ++L+EM  +G  P+ V  + + +G C
Sbjct: 724 LQE-MSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFC 782

Query: 565 KHGTLEEARKV 575
           K G +EE  K+
Sbjct: 783 KEGKIEEGFKI 793



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 142/338 (42%), Gaps = 34/338 (10%)

Query: 145 QKGYKHNFASYNALAYCLSRN-NLFRAADQVPELMD------------------SQGRIA 185
           +KG+  N  + NAL + L +  N+  A   + ++++                   +G++ 
Sbjct: 484 EKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVE 543

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E  ++  +M +   +PD F Y  +I  +     LD  + +W E K   +  +V  Y  +I
Sbjct: 544 EGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMI 603

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G CK  ++  G +LF E+    + ++  +Y  LI      G   +A  L  D+   G  
Sbjct: 604 DGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIP 663

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
                Y+S+I G+C + + + A  L +   ++ L P+      L+    ++G+MD    +
Sbjct: 664 PTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNV 723

Query: 366 LAQME-------KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNI 417
           L +M        K+ ++V  D          K   +  A  +  E+ GKG       YN+
Sbjct: 724 LQEMSSYDIHPNKITYTVMID-------GYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNV 776

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           L     + G++++   +   M    L ++ ++++  + 
Sbjct: 777 LTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVH 814


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 194/408 (47%), Gaps = 38/408 (9%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           + ++++M    C+PD+  Y  ++  L    + D    +  +M++  +E  V+ Y T+I G
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 60

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK   +     LF+EM+  GI  +   Y  LI  L   G+   A  LL D+++     D
Sbjct: 61  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 120

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  ++++I    +  +  +A KL++  V+  + P   T + L+          N F +  
Sbjct: 121 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLI----------NGFCMHD 170

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE 427
           ++++ K        + FEF+V K                  +  V  YN L+    +   
Sbjct: 171 RLDEAK--------QMFEFMVSKH----------------CFPDVVTYNTLIKGFCKYKR 206

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           V++ + +F +M    L  N+++++I IQ   ++GD   A E   +++     P++  YN 
Sbjct: 207 VEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 266

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L  GLCK G+++ A M+V + L      PT + Y + I  +C++G+ E   ++   ++ +
Sbjct: 267 LLDGLCKNGKLEKA-MVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK 325

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIV 592
           G  P+ V  + +ISG C+ G+ EEA  +F  ++E   L  +   NT++
Sbjct: 326 GVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 373



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 172/405 (42%), Gaps = 37/405 (9%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
             +L KM +   +P V  Y  +I  L   +++D  L +++EM+   +  +V+ Y +LI  
Sbjct: 36  FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 95

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC  GR      L  +M E  I  D   +  LI+  V EGK+ +A  L  ++V       
Sbjct: 96  LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 155

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  Y+S+I G C   + D+A ++FE  V     PD  T N L+                 
Sbjct: 156 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLI----------------- 198

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIG 426
                         K F     K +R+   ++VF E+  +G   +   YNIL+  L + G
Sbjct: 199 --------------KGF----CKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 240

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
           +   A  +F +M    +  N ++++  +    ++G + +A      +      P++  YN
Sbjct: 241 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYN 300

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            + +G+CK G+++    L  + L      P    Y   I   CR G  E+   +  EM +
Sbjct: 301 IMIEGMCKAGKVEDGWDLFCN-LSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKE 359

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           +G  PN    + +I    + G  E + ++   +R      +A+TI
Sbjct: 360 DGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI 404



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 155/324 (47%), Gaps = 36/324 (11%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------------PELMDS---QGRI 184
           + KG + N  +Y++L  CL     +  A ++                  L+D+   +G++
Sbjct: 78  ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 137

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  ++ ++M +    P +  Y+++I        LD   +++E M       DV+ Y TL
Sbjct: 138 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 197

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK  RV  G E+FREM + G++ +   Y +LI+GL   G    A ++ K++V  G 
Sbjct: 198 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 257

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  YN+++ GLC+  + +KA  +FE   +  + P   T N ++    + G++++ + 
Sbjct: 258 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 317

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG------KEERIMMALDVFEELKGKGYSSVP---IY 415
           L   +  LK  V  D+  +   + G      KEE    A  +F+E+K  G  ++P    Y
Sbjct: 318 LFCNLS-LK-GVKPDVVAYNTMISGFCRKGSKEE----ADALFKEMKEDG--TLPNSGCY 369

Query: 416 NILMGALLEIGEVKKALYLFGKMR 439
           N L+ A L  G+ + +  L  +MR
Sbjct: 370 NTLIRARLRDGDREASAELIKEMR 393



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/388 (20%), Positives = 161/388 (41%), Gaps = 38/388 (9%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + L + ++M     +P+V  Y+++I  L          R+  +M +  +  DV  +  LI
Sbjct: 69  DALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALI 128

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
               K G++V   +L+ EM +  I      Y  LI G     ++ +A  + + +V     
Sbjct: 129 DAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF 188

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  YN++I G C+ K+ ++  ++F    Q  L  +  T N L+    + G  D     
Sbjct: 189 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCD----- 243

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLE 424
                                         MA ++F+E+   G   ++  YN L+  L +
Sbjct: 244 ------------------------------MAQEIFKEMVSDGVPPNIMTYNTLLDGLCK 273

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G+++KA+ +F  ++   +E    +++I I+   ++G + +  +    +      P V A
Sbjct: 274 NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVA 333

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN +  G C+ G  + A  L ++ +    + P    Y   I    R G+ E   E++ EM
Sbjct: 334 YNTMISGFCRKGSKEEADALFKE-MKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 392

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEA 572
              G   +      +++ M   G L+++
Sbjct: 393 RSCGFAGDASTI-GLVTNMLHDGRLDKS 419



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 94/196 (47%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E +E+  +M +     +   Y  +I+ L    + D    +++EM  D V  ++M Y 
Sbjct: 206 RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYN 265

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TL+ GLCK G++ +   +F  ++ + +      Y ++IEG+   GKV    DL  +L   
Sbjct: 266 TLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK 325

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + D+  YN++I G CR    ++A  LF+   +D   P+    N L+      G  +  
Sbjct: 326 GVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREAS 385

Query: 363 FKLLAQMEKLKFSVAA 378
            +L+ +M    F+  A
Sbjct: 386 AELIKEMRSCGFAGDA 401



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           E M   G++ +  ++   +     KPDV AY  MI     + + +    +++EMK+D   
Sbjct: 304 EGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL 363

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            +   Y TLI    + G      EL +EM+  G   D +  G L+  ++ +G++ K+
Sbjct: 364 PNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRLDKS 419


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 196/405 (48%), Gaps = 16/405 (3%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+     +L K+ +   +PD   +T +IR L  E  +   L ++++M  +  + +V+ Y 
Sbjct: 115 RVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYG 174

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TLI GLCK G       L R M++     D  IY  +I+ L  + +V +A +L   +V  
Sbjct: 175 TLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQ 234

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD---FSTVNPLLVCCAEMGRM 359
           G   D+  Y S++  LC + ++     L    V   + PD   FSTV   L  C E G++
Sbjct: 235 GISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDAL--CKE-GKV 291

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYN 416
               +++  M  ++  V  D+  +   + G   +  +  A+ VF+ +  KG++  V  Y 
Sbjct: 292 TEAHEIVDMM--IQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYT 349

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKII 474
            L+    +I ++ KA+YLF +M       ++ +++  +   CHV  G + +A    ++++
Sbjct: 350 TLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHV--GRLQDAIALFHEMV 407

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
              Q+P +  Y+ L   LCK   ++ AM L++  +      P    Y + I  +CR+GE 
Sbjct: 408 ARGQMPDLVTYSILLDSLCKNRHLEEAMALLK-AIEASNLNPDIQVYNIIIDGMCRAGEL 466

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           E   ++ + ++ +G  P+    + +I G+CK G L EA K+F  +
Sbjct: 467 EAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEM 511



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 182/392 (46%), Gaps = 12/392 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+I E L + +KM     +P+V  Y  +I  L    N  A +R+   M++   + DV+ 
Sbjct: 148 EGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVI 207

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y ++I  LCK  +V     LF +M   GI  D   Y  L+  L    +      LL  +V
Sbjct: 208 YTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMV 267

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +S    D+ I+++++  LC+  +  +A+++ ++ +Q  + PD  T   L+        MD
Sbjct: 268 NSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMD 327

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNI 417
              K+   M +  F  A D+  +   + G  K  +I  A+ +FEE+  K +      YN 
Sbjct: 328 EAVKVFDMMVRKGF--APDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNT 385

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           LM  L  +G ++ A+ LF +M       + +++SI +    ++  + EA      I   +
Sbjct: 386 LMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASN 445

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRSGEA 534
             P +  YN +  G+C+ GE++AA    RD   N++S    P+ + Y + I  +C+ G  
Sbjct: 446 LNPDIQVYNIIIDGMCRAGELEAA----RDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLL 501

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
            +  ++  EM    C P+    + I  G  ++
Sbjct: 502 NEANKLFMEMDGNDCSPDGCTYNTIARGFLQN 533



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 191/462 (41%), Gaps = 29/462 (6%)

Query: 142 AGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ---GRIAEM------LEILE 192
           +  Q  +      +N L   LS  N        P ++D       IA+M      L +  
Sbjct: 30  SSSQNNFHSKSLHFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLST 89

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
           +M      P+V+    +I        +     V  ++ K   + D   + TLI GLC  G
Sbjct: 90  QMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEG 149

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
           ++     LF +M + G   +   YG LI GL   G    A  LL+ +     + D+ IY 
Sbjct: 150 KIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYT 209

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
           SII  LC+ +Q  +A+ LF   V   ++PD  T   L+     +    +   LL QM   
Sbjct: 210 SIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNS 269

Query: 373 K-------FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
           K       FS   D        + KE ++  A ++ + +  +G    V  Y  LM     
Sbjct: 270 KILPDVVIFSTVVD-------ALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCL 322

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
             E+ +A+ +F  M       + +S++  I  + +   I +A     ++     +P    
Sbjct: 323 QSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKT 382

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLN 542
           YN L  GLC +G +  A+ L  +    VA G  P    Y++ +  +C++   E+ + +L 
Sbjct: 383 YNTLMYGLCHVGRLQDAIALFHEM---VARGQMPDLVTYSILLDSLCKNRHLEEAMALLK 439

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
            +      P+  + + II GMC+ G LE AR +F+NL  + L
Sbjct: 440 AIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGL 481



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 127/289 (43%), Gaps = 36/289 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ E  EI++ M +   +PDV  YT ++     +  +D  ++V++ M +     DV++
Sbjct: 288 EGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVIS 347

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI G CK  ++ +   LF EM     + D   Y  L+ GL   G++  A  L  ++V
Sbjct: 348 YTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMV 407

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   DL  Y+ ++  LC+ +  ++A  L +     +L PD    N ++      G ++
Sbjct: 408 ARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELE 467

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILM 419
                                               A D+F  L  KG + SV  YNI++
Sbjct: 468 -----------------------------------AARDLFSNLSSKGLHPSVWTYNIMI 492

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
             L + G + +A  LF +M G +   +  +++   +  +++ + L A +
Sbjct: 493 HGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQ 541



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 109/245 (44%), Gaps = 3/245 (1%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD    Q  + E +++ + M R    PDV +YT +I        +D  + ++EEM +  
Sbjct: 316 LMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKE 375

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
              D   Y TL+ GLC  GR+     LF EM   G + D   Y +L++ L     + +A 
Sbjct: 376 WIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAM 435

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            LLK +  S    D+ +YN II G+CR  + + A  LF       L P   T N ++   
Sbjct: 436 ALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGL 495

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
            + G ++   KL  +M+    S              +    + A+ + EE+  +G+S+  
Sbjct: 496 CKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADS 555

Query: 414 IYNIL 418
            + +L
Sbjct: 556 CFLML 560



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/399 (20%), Positives = 154/399 (38%), Gaps = 79/399 (19%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P +  +  ++  +A  ++    L +  +M    V  +V     LI   C   RV     +
Sbjct: 63  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 122

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             ++ + G   D   +  LI GL  EGK+G+A  L   ++D G++ ++  Y ++I GLC+
Sbjct: 123 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 182

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           V     A +L     Q +  PD      ++  +C                          
Sbjct: 183 VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLC-------------------------- 216

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
                      K+ ++  A ++F ++ G+G S  +  Y  L+ AL  + E K    L  +
Sbjct: 217 -----------KDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQ 265

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M    +  + + FS  +    + G + EA E  + +I+    P V  Y  L  G C   E
Sbjct: 266 MVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSE 325

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           +D A                                    ++V + M ++G  P+ +  +
Sbjct: 326 MDEA------------------------------------VKVFDMMVRKGFAPDVISYT 349

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIVY 593
            +I+G CK   +++A  +F  +  ++ + +    NT++Y
Sbjct: 350 TLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMY 388


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 137/515 (26%), Positives = 224/515 (43%), Gaps = 88/515 (17%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLD------------AC------------- 222
           +E+   M     +PDV+ YT +IR L   ++L              C             
Sbjct: 212 MELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDG 271

Query: 223 ----LRVWEE--MKKDL----VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
                +VWE   +KKDL    ++ DV+ Y TL+ GLCK      G E+  EM        
Sbjct: 272 LCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPS 331

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
            A    L+EGL   GK+ +A +L+K +VD G   +L +YN++I  LC+ ++F +A  LF+
Sbjct: 332 EAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFD 391

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKLKFSV-------------- 376
              +  L P+  T + L+      G++D     L +M    LK SV              
Sbjct: 392 RMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFG 451

Query: 377 -AADLEKFFEFLVGK------------------EERIMMALDVFEELKGKGYS-SVPIYN 416
             +  E F   ++ K                  + +I  AL ++ E+ GKG + S+  + 
Sbjct: 452 DISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFT 511

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  L   G ++ A+ LF +M   N++ N +++++ I+ + E GD+ +A E   ++ E 
Sbjct: 512 TLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEK 571

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
             VP   +Y  L  GLC  G+   A + V D L        E  Y   +   CR G+ E+
Sbjct: 572 GIVPDTYSYRPLIHGLCLTGQASEAKVFV-DGLHKGNCELNEICYTGLLHGFCREGKLEE 630

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL----RERKLLTEANTIV 592
            + V  EM Q G   + V    +I G  KH    + RK+F  L     +R L  + + ++
Sbjct: 631 ALSVCQEMVQRGVDLDLVCYGVLIDGSLKH----KDRKLFFGLLKEMHDRGL--KPDDVI 684

Query: 593 YDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
           Y  ++    K KT D      + FG+   +  +GC
Sbjct: 685 YTSMI--DAKSKTGDFK----EAFGIWDLMINEGC 713



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 113/531 (21%), Positives = 234/531 (44%), Gaps = 43/531 (8%)

Query: 98  KNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNA 157
           + +  W   + +EL   R  T  +   ++   ++P L  +FF++ G  +G+ H+ AS+  
Sbjct: 50  RGKRSWEIALSSELVSRRLKTVHVEEILIGTIDDPKLGLRFFNFLGLHRGFDHSTASFCI 109

Query: 158 LAYCLSRNNLFRAADQVPE---------------------------------LMDSQGRI 184
           L + L + NLF  A  + +                                 L+    R 
Sbjct: 110 LIHALVKANLFWPASSLLQTLLLRALKPSDVFNVLFSCYEKCKLSSSSSFDLLIQHYVRS 169

Query: 185 AEMLEILEKMRRNLCK----PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
             +L+ +   +  + K    P+V   +A++  L   R+    + ++ +M    +  DV  
Sbjct: 170 RRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYI 229

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I  LC+   + R  E+   M+  G  ++   Y VLI+GL  + KV +A  + KDL 
Sbjct: 230 YTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLA 289

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
               + D+  Y +++ GLC+V++F+   ++ +  +    +P  + V+ L+    + G+++
Sbjct: 290 GKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIE 349

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYSSVPI-YNI 417
               L+ ++  + F V+ +L  +   +  + K  +   A  +F+ +   G     + Y+I
Sbjct: 350 EALNLVKRV--VDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSI 407

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+      G++  AL   G+M    L+++   ++  I  H + GDI  A     ++I   
Sbjct: 408 LIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKK 467

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P+V  Y  L  G C  G+I+ A+ L  +  G     P+ + +   +  + R+G     
Sbjct: 468 LEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGK-GIAPSIYTFTTLLSGLFRAGLIRDA 526

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           +++ NEM +    PN V  + +I G C+ G + +A +    + E+ ++ + 
Sbjct: 527 VKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDT 577



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 107/467 (22%), Positives = 204/467 (43%), Gaps = 54/467 (11%)

Query: 165 NNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLR 224
           N+L     +  ++  ++G +AEM+   +K+     +P V  YT+++    ++  ++  LR
Sbjct: 441 NSLINGHCKFGDISAAEGFMAEMIN--KKL-----EPTVVTYTSLMGGYCSKGKINKALR 493

Query: 225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
           ++ EM    +   +  + TL+ GL + G +    +LF EM E  +  +R  Y V+IEG  
Sbjct: 494 LYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYC 553

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
            EG + KA + LK++ + G   D   Y  +I GLC   Q  +A    +   + +   +  
Sbjct: 554 EEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEI 613

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG----KEERIMMALDV 400
               LL      G+++    +  +M  ++  V  DL  +   + G    K+ ++   L  
Sbjct: 614 CYTGLLHGFCREGKLEEALSVCQEM--VQRGVDLDLVCYGVLIDGSLKHKDRKLFFGL-- 669

Query: 401 FEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
            +E+  +G      IY  ++ A  + G+ K+A  ++  M       N ++++  I    +
Sbjct: 670 LKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCK 729

Query: 460 SG------------------------------------DILEACECHNKIIEMSQVPSVA 483
           +G                                    D+ +A E HN I++   + + A
Sbjct: 730 AGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILK-GLLANTA 788

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            YN L +G C+ G I+ A  L+   +G+  S P    Y   I  +CR  + +K IE+ N 
Sbjct: 789 TYNMLIRGFCRQGRIEEASELITRMIGDGVS-PDCITYTTMINELCRRNDVKKAIELWNS 847

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           MT++G  P+ V  + +I G C  G + +A ++   +  + L+    T
Sbjct: 848 MTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/408 (22%), Positives = 177/408 (43%), Gaps = 10/408 (2%)

Query: 170 AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
           A   + E +  +G+I E L +++++      P++F Y A+I  L   R       +++ M
Sbjct: 334 AVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRM 393

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
            K  +  + + Y  LI   C+ G++        EM + G+ +    Y  LI G    G +
Sbjct: 394 GKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDI 453

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
             A   + ++++      +  Y S++GG C   + +KA +L+       +AP   T   L
Sbjct: 454 SAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTL 513

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGK 407
           L      G + +  KL  +M   +++V  +   +   + G  +E  +  A +  +E+  K
Sbjct: 514 LSGLFRAGLIRDAVKLFNEMA--EWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEK 571

Query: 408 GYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
           G   VP    Y  L+  L   G+  +A      +   N E+N + ++  +      G + 
Sbjct: 572 GI--VPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLE 629

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
           EA     ++++      +  Y  L  G  K  +      L+++ + +    P +  Y   
Sbjct: 630 EALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKE-MHDRGLKPDDVIYTSM 688

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           I    ++G+ ++   + + M  EGC PNEV  +A+I+G+CK G + EA
Sbjct: 689 IDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEA 736



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 16/125 (12%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           KG   N A+YN L     R                QGRI E  E++ +M  +   PD   
Sbjct: 781 KGLLANTATYNMLIRGFCR----------------QGRIEEASELITRMIGDGVSPDCIT 824

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           YT MI  L    ++   + +W  M +  +  D +AY TLI G C  G + +  EL  EM 
Sbjct: 825 YTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEML 884

Query: 266 ENGIL 270
             G++
Sbjct: 885 RQGLI 889


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 118/492 (23%), Positives = 218/492 (44%), Gaps = 16/492 (3%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE 176
           ++P  V+ +  ++ +P  A  F HW  +   YKH+  SY +L   L  N       ++  
Sbjct: 88  ISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRL 147

Query: 177 LM-DSQGRIAEMLEILEKMRRNLCKPDVF---------AYTAMIRVLAAERNLDACLRVW 226
           LM  S   +A+ L +L+ + R + K + F          Y  ++  LA    +D   +V+
Sbjct: 148 LMIKSCDSVADTLFVLD-LCRKMNKDESFELKYKLIIGCYNTLLNSLARFGLVDEMKQVY 206

Query: 227 EEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
            EM +D V  ++  Y  ++ G CK G V   ++    + E G+  D   Y  LI G    
Sbjct: 207 MEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQR 266

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
             +  A  + K++   G R +   Y  +I GLC  ++ D+A  LF     DD  P   T 
Sbjct: 267 KDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTY 326

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKG 406
             L+       R      L+ +ME+                +  + ++  A ++  ++  
Sbjct: 327 TVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLE 386

Query: 407 KG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
           KG   +V  YN L+    + G ++ AL +   M   NL  N+ +++  I+ + +  ++ +
Sbjct: 387 KGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKR-NVHK 445

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A    NK++E   +P V  YN L  G C+ G  D+A  L+   + +    P  + Y   I
Sbjct: 446 AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLL-SLMNDRGLVPDPWTYTSMI 504

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
             +C+S   E+  ++ + + Q+   PN V+ +A+I G CK G + EA  +   +  +  L
Sbjct: 505 DSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCL 564

Query: 586 TEANTIVYDEIL 597
              N++ ++ ++
Sbjct: 565 --PNSLTFNALI 574



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 200/479 (41%), Gaps = 66/479 (13%)

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCK------- 200
           YK     YN L   L+R  L     QV   M  + ++   +    KM    CK       
Sbjct: 179 YKLIIGCYNTLLNSLARFGLVDEMKQVYMEM-LEDKVCPNIYTYNKMVNGYCKVGNVEEA 237

Query: 201 -------------PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
                        PD F YT++I      ++LD+  +V++EM       + +AY  LI G
Sbjct: 238 NQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHG 297

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC   R+    +LF +MK++        Y VLI+ L G  +  +A +L+K++ + G + +
Sbjct: 298 LCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPN 357

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  Y  +I  LC   + +KA +L    ++  L P+  T N L+    + G +++   ++ 
Sbjct: 358 IHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVE 417

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEER-IMMALDVFEE-LKGKGYSSVPIYNILMGALLEI 425
            ME    ++  +   + E + G  +R +  A+ V  + L+ K    V  YN L+      
Sbjct: 418 LMESR--NLRPNTRTYNELIKGYCKRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRS 475

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G    A  L   M    L  +  +++  I    +S  + EAC+  + + +   +P+V  Y
Sbjct: 476 GNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMY 535

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
             L  G CK G+++ A ++                                    L +M 
Sbjct: 536 TALIDGYCKAGKVNEAHLM------------------------------------LEKML 559

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN-TIVYDEILIEHMKK 603
            + C PN +  +A+I G+C  G L+EA    T L E+ +  +   T+  D ILI  + K
Sbjct: 560 SKNCLPNSLTFNALIHGLCTDGKLKEA----TLLEEKMVKIDLQPTVSTDTILIHRLLK 614



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 102/473 (21%), Positives = 204/473 (43%), Gaps = 75/473 (15%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           +KG   N  +YNAL   YC                   +G I + L+++E M     +P+
Sbjct: 386 EKGLMPNVITYNALINGYC------------------KRGMIEDALDVVELMESRNLRPN 427

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
              Y  +I+    +RN+   + V  +M +  V  DV+ Y +LI G C+ G     + L  
Sbjct: 428 TRTYNELIKGYC-KRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLS 486

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            M + G++ D   Y  +I+ L    +V +ACDL   L       ++ +Y ++I G C+  
Sbjct: 487 LMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAG 546

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           + ++A+ + E  +  +  P+  T N L+      G++     L  +M K+      DL+ 
Sbjct: 547 KVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKI------DLQ- 599

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                                       +V    IL+  LL+ G+   A   F +M    
Sbjct: 600 ---------------------------PTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSG 632

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
            + ++ +++  IQ +   G + +A +   K+ E    P +  Y+ L KG   +G  ++A 
Sbjct: 633 TKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAF 692

Query: 503 MLVRDCLGNVASGPTEFKYALTILHV-------CRSGEA-----------EKIIEVLNEM 544
           ++++  + +    P++  +   I H+        + GE            + ++E+L +M
Sbjct: 693 VVLKR-MHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKM 751

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            + G  PN      ++ G+C+ G L  A KVF ++++++ ++ +  +V++ +L
Sbjct: 752 VEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSE-LVFNALL 803



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 101/434 (23%), Positives = 185/434 (42%), Gaps = 42/434 (9%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           +  +YN+L     R+  F +A ++  LM+ +G +                PD + YT+MI
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV----------------PDPWTYTSMI 504

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
             L   + ++    +++ +++  V  +V+ Y  LI G CK G+V   H +  +M     L
Sbjct: 505 DSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCL 564

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
            +   +  LI GL  +GK+ +A  L + +V    +  +     +I  L +   FD AY+ 
Sbjct: 565 PNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRR 624

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK 390
           F+  +     PD  T    +      GR+ +   ++A+M+  +  V+ DL  +   + G 
Sbjct: 625 FQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMK--ENGVSPDLFTYSSLIKGY 682

Query: 391 EE--RIMMALDVFEELKGKGYS-SVPIYNILMGALLEI--GEVKKALYLFGKMRGLNLEV 445
            +  R   A  V + +   G   S   +  L+  LLE+  G+VK      G   G+ +  
Sbjct: 683 GDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVK------GGEPGVCVMS 736

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N + F I ++       +LE      K++E    P+  +Y  L  G+C+IG +  A  + 
Sbjct: 737 NMMEFDIVVE-------LLE------KMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVF 783

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
                     P+E  +   +   C+  +  +  +V+++M   G  P    C  +I  + K
Sbjct: 784 DHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYK 843

Query: 566 HGTLEEARKVFTNL 579
            G  E    VF NL
Sbjct: 844 KGEKERGTSVFQNL 857


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 211/463 (45%), Gaps = 20/463 (4%)

Query: 173 QVPELMDSQGRIAEMLEILEKMRRNL----CKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
           Q  +L+ +  ++ +  +++  + + +      P+++  +  +      + +D    V  +
Sbjct: 94  QFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAK 153

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           + K  ++  ++ + TLI GLCK G   +  ELF +M   G   D   Y  +I GL   G+
Sbjct: 154 VIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGE 213

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
              A  LLK + ++G + ++  Y+++I  LCR +  ++A  +F       ++PD  T   
Sbjct: 214 TAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTS 273

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELK 405
           L+    +  R      LL +M  L  ++  D+   F  LV    KE ++  AL V + + 
Sbjct: 274 LIQGLCKFSRWKEASALLNEMTSL--NIMPDIVT-FNVLVDTFCKEGKVSEALGVLKTMT 330

Query: 406 GKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
             G   +V  Y+ LM       +V +A  LF  M     + N  S++I I  + ++  I 
Sbjct: 331 EMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRID 390

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
           EA +  N++I     P+  +YN L  G C++G++  A  L R+   N  + P  F Y++ 
Sbjct: 391 EAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTN-GNLPDLFTYSIL 449

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           +   C+ G   K   +   M      PN V+ + ++  MCK G  ++ARK+F+ L  + L
Sbjct: 450 LDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGL 509

Query: 585 LTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
             + +  +Y  I+    K+   D  L   +       ++A GC
Sbjct: 510 --QPHVQLYTTIINGLCKEGLLDEALEAFR------NMEADGC 544



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 176/410 (42%), Gaps = 41/410 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G  A    +L+KM    C+P++  Y+ +I  L  +R ++  L ++  MK   +  D+  Y
Sbjct: 212 GETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTY 271

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI GLCK  R      L  EM    I+ D   + VL++    EGKV +A  +LK + +
Sbjct: 272 TSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTE 331

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++  Y+S++ G        +A KLF V +     P+  + N L+    +  R+D 
Sbjct: 332 MGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDE 391

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
             +L  +M  +   +  +   +   + G  +  ++  A D+F  +   G    +  Y+IL
Sbjct: 392 AMQLFNEM--IHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSIL 449

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G + KA  LF  M+   L+ N + ++I +    +SG+  +A +  +++     
Sbjct: 450 LDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGL 509

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P V  Y  +  GLCK G +D A+                                    
Sbjct: 510 QPHVQLYTTIINGLCKEGLLDEAL------------------------------------ 533

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           E    M  +GCPP+E+  + II G+ +H     A  +   +R+R  + + 
Sbjct: 534 EAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRGFIADV 583



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 121/260 (46%), Gaps = 1/260 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+++E L +L+ M     +P+V  Y++++   +   ++    +++  M     + ++ +
Sbjct: 316 EGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFS 375

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK  R+    +LF EM   G+  +   Y  LI G    GK+ +A DL +++ 
Sbjct: 376 YNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMC 435

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +G   DL  Y+ ++ G C+     KA++LF       L P+      L+    + G   
Sbjct: 436 TNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHK 495

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILM 419
           +  KL +++          L       + KE  +  AL+ F  ++  G     I YN+++
Sbjct: 496 DARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVII 555

Query: 420 GALLEIGEVKKALYLFGKMR 439
             LL+  +  +AL L G+MR
Sbjct: 556 RGLLQHKDESRALLLVGEMR 575



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 19/183 (10%)

Query: 145 QKGYKHNFASYNALAYCLSR-------NNLFR---AADQVPELMD---------SQGRIA 185
            +G   N  SYN L +   +        +LFR       +P+L            QG + 
Sbjct: 401 HQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLG 460

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           +   +   M+    KP++  YT ++  +    N     +++ E+    ++  V  Y T+I
Sbjct: 461 KAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTII 520

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLCK G +    E FR M+ +G   D   Y V+I GL+      +A  L+ ++ D G+ 
Sbjct: 521 NGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRGFI 580

Query: 306 ADL 308
           AD+
Sbjct: 581 ADV 583


>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 689

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 118/477 (24%), Positives = 226/477 (47%), Gaps = 27/477 (5%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKM 194
           A  F +W  K+ G+K +  SY+ +   L++                 G++ + LE+ ++M
Sbjct: 168 ARGFLNWMWKE-GFKPDVFSYSTVINDLAKT----------------GKLDDALELFDEM 210

Query: 195 RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMAYVTLIMGLCKGGR 253
                 PDV  Y  +I     E++    +++W+++ +D  V  +V  +  +I GL K GR
Sbjct: 211 SERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLEDSSVYPNVKTHNIMISGLSKCGR 270

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           V    +++  MK+N    D   Y  LI GL  EG V KA  +  +LV+     D+  YN+
Sbjct: 271 VDDCLKIWDRMKQNEREKDLYTYSSLIHGLCDEGNVDKAESVFNELVERKAFIDVVTYNT 330

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           ++GG CR  +  ++ +L+ +  Q + + +  + N L+    E G++D    +   M    
Sbjct: 331 MLGGFCRCGKIKESLELWRIMEQRN-SVNIVSYNILIKGLLENGKIDEATMIWRLMPAKG 389

Query: 374 FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKK 430
           +  AAD   +  F+ G      +  AL V +E++ KG +  V  Y  ++  L +   +++
Sbjct: 390 Y--AADNTTYGIFIHGLCVNGYVNKALGVMQEVESKGGHLDVYAYASIIDCLCKKRRLEE 447

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A  L  +M    +E+NS   +  I   +    + +A      + +   +P+V +YN L  
Sbjct: 448 ASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLSDASLLMRGMGKNGCLPTVVSYNILIC 507

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           GLC+ G+   A   V++ L N    P    Y++ +  +CR  + E  +E+ ++  Q G  
Sbjct: 508 GLCEAGKFGEASAFVKEMLEN-GLKPDLKTYSILLGGLCRDRKIELALELWHQFLQSGLE 566

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           P+ ++ + +I G+C  G L++A  V  N+  R     AN + Y+ ++  + K + ++
Sbjct: 567 PDVMMHNILIHGLCSVGKLDDAMTVMANMEHRN--CTANLVTYNTLMEGYFKVRDSN 621



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 120/524 (22%), Positives = 222/524 (42%), Gaps = 63/524 (12%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           + ++P  V ++LK E NP  A   F  A +  GY H+   Y+ +   LS           
Sbjct: 6   KSLSPKHVLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSE---------- 55

Query: 175 PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL- 233
             ++   GRI E++      R   CK D     ++I+        D  L V++ M++   
Sbjct: 56  ARMVTHVGRIVELI------RSQECKCDEDVALSVIKTYGKNSMPDRALDVFKRMREIFG 109

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
            E  + +Y TL+    +  + V+   LF   +  G+  +   Y VLI+    + +  KA 
Sbjct: 110 CEPGIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKAR 169

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL---- 349
             L  +   G++ D+  Y+++I  L +  + D A +LF+   +  +APD +  N L    
Sbjct: 170 GFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILIDGF 229

Query: 350 --------------------------------LVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
                                           +   ++ GR+D+  K+  +M++ +    
Sbjct: 230 LKEKDHKMAMQLWDKLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNERE-- 287

Query: 378 ADLEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYL 434
            DL  +   + G   E  +  A  VF EL + K +  V  YN ++G     G++K++L L
Sbjct: 288 KDLYTYSSLIHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLEL 347

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           +  M   N  VN +S++I I+  +E+G I EA      +           Y     GLC 
Sbjct: 348 WRIMEQRN-SVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCV 406

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
            G ++ A+ ++++ + +       + YA  I  +C+    E+   ++ EM++ G   N  
Sbjct: 407 NGYVNKALGVMQE-VESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSH 465

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           +C+A+I G+ +   L +A  +   + +   L    T+V   ILI
Sbjct: 466 VCNALIGGLIRDSRLSDASLLMRGMGKNGCLP---TVVSYNILI 506



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 158/348 (45%), Gaps = 9/348 (2%)

Query: 182 GRIAEMLEILEKM-RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           G+I E LE+   M +RN    ++ +Y  +I+ L     +D    +W  M      AD   
Sbjct: 339 GKIKESLELWRIMEQRN--SVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADNTT 396

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y   I GLC  G V +   + +E++  G  +D   Y  +I+ L  + ++ +A +L+K++ 
Sbjct: 397 YGIFIHGLCVNGYVNKALGVMQEVESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMS 456

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   +  + N++IGGL R  +   A  L     ++   P   + N L+    E G+  
Sbjct: 457 KHGVELNSHVCNALIGGLIRDSRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFG 516

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
                + +M  L+  +  DL+ +   L G  ++ +I +AL+++ +    G    V ++NI
Sbjct: 517 EASAFVKEM--LENGLKPDLKTYSILLGGLCRDRKIELALELWHQFLQSGLEPDVMMHNI 574

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L  +G++  A+ +   M   N   N ++++  ++ + +  D   A      + +M 
Sbjct: 575 LIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMG 634

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
             P + +YN + KGLC    +  A+    D   N    PT + + + +
Sbjct: 635 LQPDIISYNTILKGLCLCHRVSYAIEFFDDA-RNHGIFPTVYTWNILV 681



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 100/226 (44%), Gaps = 19/226 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           + KG   +  +Y ++  CL +      A  + + M   G                   R+
Sbjct: 421 ESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRL 480

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           ++   ++  M +N C P V +Y  +I  L             +EM ++ ++ D+  Y  L
Sbjct: 481 SDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSIL 540

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + GLC+  ++    EL+ +  ++G+  D  ++ +LI GL   GK+  A  ++ ++     
Sbjct: 541 LGGLCRDRKIELALELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNC 600

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            A+L  YN+++ G  +V+  ++A  ++    +  L PD  + N +L
Sbjct: 601 TANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMGLQPDIISYNTIL 646



 Score = 47.0 bits (110), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/105 (21%), Positives = 50/105 (47%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G++ + + ++  M    C  ++  Y  ++      R+ +    +W  M K  ++ D++
Sbjct: 581 SVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMGLQPDII 640

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
           +Y T++ GLC   RV    E F + + +GI      + +L+  +V
Sbjct: 641 SYNTILKGLCLCHRVSYAIEFFDDARNHGIFPTVYTWNILVRAVV 685


>gi|2462828|gb|AAB72163.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1152

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 123/527 (23%), Positives = 233/527 (44%), Gaps = 45/527 (8%)

Query: 113 KLRRVTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA 171
           +L    P+L+  VL  +   P +A +FF+W  +Q   K +  ++ A+   L+ N+L   A
Sbjct: 116 RLLLTDPNLLIRVLNMIRVKPEIAFRFFNWIQRQSDVKQSRQAFAAMLEILAENDLMSEA 175

Query: 172 DQVPE-------------LMD-------------------SQGRIAE-MLEILEKMRRNL 198
             V E             L+D                   ++  +AE  L   EKM R  
Sbjct: 176 YLVAERSIDLGMHEIDDLLIDGSFDKLIALKLLDLLLWVYTKKSMAEKFLLSFEKMIRKG 235

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
             P V     +++VL   R ++    V+E M +  +   V+ + T++    K G + R  
Sbjct: 236 FLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERVD 295

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           +++ EMK   I      Y +LI G    GK+ +A     D+  SG+      +N +I G 
Sbjct: 296 KIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGY 355

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C+   FD A+ + +  +   + P  ST N  +    + GR+D+  +LL+ M       A 
Sbjct: 356 CKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSM------AAP 409

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELK-GKGYSSVPIYNILMGALLEIGEVKKALYLF 435
           D+  +   + G  K  + + A  +F++L+ G  + S+  YN L+  L E G ++ A  L 
Sbjct: 410 DVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLK 469

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M    +  + ++++  ++  V++G++  A E +++++     P   AY     G  ++
Sbjct: 470 EEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRL 529

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G+ D A  L  + +      P    Y + I  +C+ G   K IE   ++ + G  P+ V 
Sbjct: 530 GDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVT 589

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
            + +I G  ++G  + AR ++  +  ++L    + I Y  ++  H K
Sbjct: 590 YTTVIRGYLENGQFKMARNLYDEMLRKRLY--PSVITYFVLIYGHAK 634



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 96/435 (22%), Positives = 181/435 (41%), Gaps = 16/435 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G++ E       MRR+      +++  +I     +   D    V +EM    +      
Sbjct: 323 NGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTST 382

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y   I  LC  GR+    EL   M       D   Y  L+ G +  GK  +A  L  DL 
Sbjct: 383 YNIYICALCDFGRIDDARELLSSMAAP----DVVSYNTLMHGYIKMGKFVEASLLFDDLR 438

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                  +  YN++I GLC     + A +L E      + PD  T   L+    + G + 
Sbjct: 439 AGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLS 498

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM---MALDVFEELKGKGYSS--VPIY 415
              ++  +M  L+  +  D   +    VG E R+     A  + EE+    + +  + IY
Sbjct: 499 MATEVYDEM--LRKGIKPDGYAYTTRAVG-ELRLGDSDKAFRLHEEMVATDHHAPDLTIY 555

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N+ +  L ++G + KA+    K+  + L  + ++++  I+ ++E+G    A   +++++ 
Sbjct: 556 NVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLR 615

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               PSV  Y  L  G  K G ++ A     + +      P    +   +  +C++G  +
Sbjct: 616 KRLYPSVITYFVLIYGHAKAGRLEQAFQYSTE-MKKRGVRPNVMTHNALLYGMCKAGNID 674

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           +    L +M +EG PPN+   + +IS  C     EE  K++  + ++++  +  T     
Sbjct: 675 EAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEPDGYT---HR 731

Query: 596 ILIEHMKKKTADLVL 610
            L +H++K    + L
Sbjct: 732 ALFKHLEKDHESMAL 746


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 116/524 (22%), Positives = 220/524 (41%), Gaps = 61/524 (11%)

Query: 132 PTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEIL 191
           P LA++  H   +++G + +  + NA+   LSR     +   +P+           L++ 
Sbjct: 151 PHLAAQLLHSLRRRRGVRPSLQAANAVLSALSR-----SPSTLPQ---------ASLDVF 196

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
             +      P+ + +  ++    ++  L   L     M+   +  D + Y TL+   C+ 
Sbjct: 197 RSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRK 256

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           G +     L   MK +GI   +  Y  L+      G + +A  +++ +   G+  DL  Y
Sbjct: 257 GMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTY 316

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLA-PDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           N +  GLC+  + D+A++L +   +   A PD  T N L+  C +     +  +LL +M 
Sbjct: 317 NVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMR 376

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVK 429
                            + KE ++  AL   E++  +G +  V  YN L+ A  + G V 
Sbjct: 377 DKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVA 436

Query: 430 KALYLFGKMRGLNLEVNSLSFSIA-------------------------IQCHVESGDIL 464
           KA  L  +M G  L++++ + +                           +   V  G ++
Sbjct: 437 KAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVM 496

Query: 465 EA----------CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
            A              +++IE   +PS++ YN L KGLC++  +  A+  + +    V  
Sbjct: 497 AAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEL---VEK 553

Query: 515 G--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           G  P E  Y + I   C+ G+ E      N+M +    P+ V C+ +++G+C HG L++A
Sbjct: 554 GLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKA 613

Query: 573 RKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFF 616
            K+F +  E+    + + I Y+ ++    K    D   + L FF
Sbjct: 614 LKLFESWVEKG--KKVDVITYNTLIQSMCKVGDVD---TALHFF 652



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 112/524 (21%), Positives = 219/524 (41%), Gaps = 67/524 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS-------------------QGRI 184
           K+ G      +YN L    +R    + A +V E M +                    G++
Sbjct: 270 KRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKV 329

Query: 185 AEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
            E   + ++M R +   PDV  Y  ++      R     LR+ EEM+   V+  ++ +  
Sbjct: 330 DEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNI 389

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           ++  LCK G++        ++ E G+  D   Y  LI+     G V KA  L+ ++V  G
Sbjct: 390 VVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKG 449

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            + D    N+++  LC++K+++ A +L     Q    PD  +   ++    +    +   
Sbjct: 450 LKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPAL 509

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IYNIL 418
           +L  QM + K      +  +   + G  + ER+  A+D   EL  KG   VP    YNI+
Sbjct: 510 RLWDQMIERKL--IPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGL--VPDETTYNII 565

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + A  + G+++ A     KM   + + + ++ +  +      G + +A +     +E  +
Sbjct: 566 IHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGK 625

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
              V  YN L + +CK+G++D A+    D +      P  F Y + +  +  +G +E+  
Sbjct: 626 KVDVITYNTLIQSMCKVGDVDTALHFFDD-MEVKGLQPDAFTYNVVLSALSEAGRSEEAH 684

Query: 539 EVLNEMTQEG-------CP---PNEVICSAI--------------------------ISG 562
            +L+++   G       CP   P+    + +                          ++G
Sbjct: 685 NMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNG 744

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANT-IVYDEILIEHMKKKT 605
           +C  G L+EA+ V   + ++ +  +++T I   E LI+  K++T
Sbjct: 745 LCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLMEGLIKRQKRQT 788



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 108/479 (22%), Positives = 196/479 (40%), Gaps = 57/479 (11%)

Query: 110 ELSKLRRVTPDLVAEVLKVENNPTLASKFFHW-----------AGKQKGYKHNFASYNAL 158
           E+ +L    PD+V          TL    F W             + KG K    ++N +
Sbjct: 338 EMERLSTALPDVV-------TYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIV 390

Query: 159 AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
              L +                +G++ E L  LEK+      PDV  Y  +I       N
Sbjct: 391 VKSLCK----------------EGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGN 434

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
           +     + +EM    ++ D     T++  LCK  R     EL     + G + D   YG 
Sbjct: 435 VAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGT 494

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           ++     E     A  L   +++      +  YN++I GLCR+++  +A       V+  
Sbjct: 495 VMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKG 554

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS---VAADLEKFFEFLVGKEERIM 395
           L PD +T N ++    + G ++N F+   +M +  F    V  +       L GK ++  
Sbjct: 555 LVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDK-- 612

Query: 396 MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
            AL +FE    KG    V  YN L+ ++ ++G+V  AL+ F  M    L+ ++ ++++ +
Sbjct: 613 -ALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVL 671

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVA-AYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
               E+G    + E HN + +++    ++ ++ C    L K    D A   V++  G   
Sbjct: 672 SALSEAG---RSEEAHNMLHKLADSGKLSQSFAC---PLLKPSSADEAD--VKEHEGKPE 723

Query: 514 SGPTEF-------KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
           +  +E         Y   +  +C  G+ ++   VL+EM Q+G P +      ++ G+ K
Sbjct: 724 AESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLMEGLIK 782


>gi|225424625|ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial [Vitis vinifera]
 gi|296081374|emb|CBI16807.3| unnamed protein product [Vitis vinifera]
          Length = 519

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 182/399 (45%), Gaps = 10/399 (2%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++LE M R    PD++AY   + +L  E  LD  L V + M +   E D++ Y  +I GL
Sbjct: 100 KLLEDMDRLGYVPDIWAYNIYLNLLCCENQLDVALGVVQTMVEKGREPDIVTYTIVINGL 159

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C+ GR     E++R M   G   D      L+ GL  +GKV  A +L    +    +   
Sbjct: 160 CRAGRFDSAVEIWRNMVRKGFSPDEKACRALVLGLCHDGKVDLAYELTVGAMRGRIKFSK 219

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
            IYNS+I G C+    DKA  +     ++   PD  T N LL  C +   ++    L+ +
Sbjct: 220 SIYNSLINGFCQAGWIDKAQSIISFMRRNGCEPDLVTYNVLLNYCCDELLLEEAENLMKK 279

Query: 369 MEKLKFSVAADLEKFFEFLVG--KEERIMMA-LDVFEELKGKGYSSVPIYNILMGALLEI 425
           ME  +  V  D+  + E L G  K  R+  A + +  +++ KG   V  YN ++ AL   
Sbjct: 280 ME--RSGVEPDVYSYNELLKGLCKANRLDKAYMMMVNKMEAKGLCDVVSYNTIIKALCTA 337

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
              K+A  LF +M G  +  + ++F+I I+  +  G    A +  +++  +  +P    Y
Sbjct: 338 SHTKRAYKLFEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKLLDQMTGLGLLPDRVLY 397

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNE 543
             +   LCK G++  A  +  D    V SG  P    Y   I  +CR+    + + +  +
Sbjct: 398 TTIVDHLCKTGKMGMAHSVFCDM---VESGITPDVVSYNALINGLCRASRVSEAMHLYED 454

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           M   G  P+EV    II G+     L  A +V+  + E+
Sbjct: 455 MHTGGPCPDEVTFKLIIGGLIWEKKLSVACRVWDQMMEK 493



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 168/419 (40%), Gaps = 20/419 (4%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           GY  +  +YN     L   N    A  V + M  +GR                +PD+  Y
Sbjct: 109 GYVPDIWAYNIYLNLLCCENQLDVALGVVQTMVEKGR----------------EPDIVTY 152

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           T +I  L      D+ + +W  M +     D  A   L++GLC  G+V   +EL      
Sbjct: 153 TIVINGLCRAGRFDSAVEIWRNMVRKGFSPDEKACRALVLGLCHDGKVDLAYELTVGAMR 212

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
             I   ++IY  LI G    G + KA  ++  +  +G   DL  YN ++   C     ++
Sbjct: 213 GRIKFSKSIYNSLINGFCQAGWIDKAQSIISFMRRNGCEPDLVTYNVLLNYCCDELLLEE 272

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA-QMEKLKFSVAADLEKFFE 385
           A  L +   +  + PD  + N LL    +  R+D  + ++  +ME              +
Sbjct: 273 AENLMKKMERSGVEPDVYSYNELLKGLCKANRLDKAYMMMVNKMEAKGLCDVVSYNTIIK 332

Query: 386 FLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
            L         A  +FEE+ GKG +  V  + IL+ A L  G    A  L  +M GL L 
Sbjct: 333 ALC-TASHTKRAYKLFEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKLLDQMTGLGLL 391

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            + + ++  +    ++G +  A      ++E    P V +YN L  GLC+   +  AM L
Sbjct: 392 PDRVLYTTIVDHLCKTGKMGMAHSVFCDMVESGITPDVVSYNALINGLCRASRVSEAMHL 451

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
             D +      P E  + L I  +    +      V ++M ++G   +  +   +++ +
Sbjct: 452 YED-MHTGGPCPDEVTFKLIIGGLIWEKKLSVACRVWDQMMEKGFTLDGAVSETLVNAI 509



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/423 (22%), Positives = 179/423 (42%), Gaps = 40/423 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I + L+  ++M ++ C+     Y   I VL  +   D   + ++ M       +   Y
Sbjct: 23  GLIDQALKTFDEMTKSNCRVFSIDYNRFIGVLVRQSRFDLAEQYYDRMIPQGFSLNSFTY 82

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
              I GLCK    V   +L  +M   G + D   Y + +  L  E ++  A  +++ +V+
Sbjct: 83  SRFISGLCKVKNFVLIEKLLEDMDRLGYVPDIWAYNIYLNLLCCENQLDVALGVVQTMVE 142

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  Y  +I GLCR  +FD A +++   V+   +PD      L++     G++D 
Sbjct: 143 KGREPDIVTYTIVINGLCRAGRFDSAVEIWRNMVRKGFSPDEKACRALVLGLCHDGKVD- 201

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
               LA                +E  VG              ++G+   S  IYN L+  
Sbjct: 202 ----LA----------------YELTVG-------------AMRGRIKFSKSIYNSLING 228

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
             + G + KA  +   MR    E + +++++ +    +   + EA     K+      P 
Sbjct: 229 FCQAGWIDKAQSIISFMRRNGCEPDLVTYNVLLNYCCDELLLEEAENLMKKMERSGVEPD 288

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE-FKYALTILHVCRSGEAEKIIEV 540
           V +YN L KGLCK   +D A M++ + +   A G  +   Y   I  +C +   ++  ++
Sbjct: 289 VYSYNELLKGLCKANRLDKAYMMMVNKME--AKGLCDVVSYNTIIKALCTASHTKRAYKL 346

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
             EM  +G  P+ V  + +I    + G+   A+K+   +    LL +   ++Y  I ++H
Sbjct: 347 FEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKLLDQMTGLGLLPD--RVLYTTI-VDH 403

Query: 601 MKK 603
           + K
Sbjct: 404 LCK 406



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 139/340 (40%), Gaps = 15/340 (4%)

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
           R  Y   I   V  G + +A     ++  S  R     YN  IG L R  +FD A + ++
Sbjct: 9   RLAYRAQISSYVKAGLIDQALKTFDEMTKSNCRVFSIDYNRFIGVLVRQSRFDLAEQYYD 68

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF---KLLAQMEKLKFSVAADLEKFFEFLVG 389
             +    + +  T +  +   + + ++ NF    KLL  M++L +         +  L+ 
Sbjct: 69  RMIPQGFSLNSFTYSRFI---SGLCKVKNFVLIEKLLEDMDRLGYVPDIWAYNIYLNLLC 125

Query: 390 KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVN 446
            E ++ +AL V + +  KG    +  Y I++  L   G    A+ ++  M  +G + +  
Sbjct: 126 CENQLDVALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFDSAVEIWRNMVRKGFSPDEK 185

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           +    +   CH   G +  A E     +      S + YN L  G C+ G ID A  ++ 
Sbjct: 186 ACRALVLGLCH--DGKVDLAYELTVGAMRGRIKFSKSIYNSLINGFCQAGWIDKAQSIIS 243

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
               N    P    Y + + + C     E+   ++ +M + G  P+    + ++ G+CK 
Sbjct: 244 FMRRN-GCEPDLVTYNVLLNYCCDELLLEEAENLMKKMERSGVEPDVYSYNELLKGLCKA 302

Query: 567 GTLEEARKVFTNLRERKLLTEA---NTIVYDEILIEHMKK 603
             L++A  +  N  E K L +    NTI+       H K+
Sbjct: 303 NRLDKAYMMMVNKMEAKGLCDVVSYNTIIKALCTASHTKR 342


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 196/414 (47%), Gaps = 10/414 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G   + +++L++M    C P+V  YT +I  L  E  ++    V+ +M K  +   ++ +
Sbjct: 291 GMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITF 350

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G CK G VV   +L   M++     +   Y  L+EGL    K  KA  LL+ +VD
Sbjct: 351 NALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVD 410

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G   D   YN ++ G C+  Q + A+ +F       L PD  T   L+    ++GR++ 
Sbjct: 411 NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQ 470

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV---FEEL-KGKGYSSVPIYNI 417
              +L  M K   S+    E  F  L+    +I  A DV   FE + + +  ++   +N 
Sbjct: 471 ANGILGSMVKKGISLD---EVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNC 527

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
            + AL +  ++ +A  + GKM    L  + ++ +I I+ H  +G+   + +   ++ +  
Sbjct: 528 FLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAG 587

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P+V  Y  +  GLC  G ++ A  ++   + +    P  F YA+ +    ++G  ++ 
Sbjct: 588 CSPNVYTYTIIINGLCNNGRVEEAETILFS-MSSFGVSPNHFTYAVLVKAHVKAGRLDRA 646

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT--NLRERKLLTEAN 589
            ++++ M + GC PN  I SA++SG     T   AR + +  +L  R L +E N
Sbjct: 647 FQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEEN 700



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/448 (23%), Positives = 192/448 (42%), Gaps = 45/448 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E  ++ ++M    C+P    YT +I+        D  +++ +EM       +V  Y
Sbjct: 256 GRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTY 315

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI  LC+ G++   + +FR+M ++G+      +  LI G   EG V  A  LL  +  
Sbjct: 316 TILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEK 375

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              + ++  YN ++ GLCRV +  KA+ L    V + L PD  T N L+         D 
Sbjct: 376 GNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILV---------DG 426

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
           F                           KE ++ MA ++F  +   G       +  L+ 
Sbjct: 427 FC--------------------------KEGQLNMAFNIFNSMNSAGLEPDGFTFTALID 460

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L ++G +++A  + G M    + ++ ++F+  I  H + G   + C     ++E   + 
Sbjct: 461 GLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLT 520

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +   +NC    L K  +++ A  ++   +      P+   + + I   CR+GE    +++
Sbjct: 521 TAHTFNCFLDALGKDYKLNEANAMLGKMM-KYGLVPSVVTHTILIEGHCRAGETALSLKM 579

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           L  M Q GC PN    + II+G+C +G +EEA  +  ++    +    N   Y  ++  H
Sbjct: 580 LERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGV--SPNHFTYAVLVKAH 637

Query: 601 MKKKTADLVLSGLKFFGLESKLKAKGCK 628
           +K    D      + F + S +   GC+
Sbjct: 638 VKAGRLD------RAFQIVSTMVKNGCQ 659



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 110/512 (21%), Positives = 214/512 (41%), Gaps = 10/512 (1%)

Query: 116 RVTPDLVAEVLKVE-NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQ- 173
            +TP L  +++ ++ NN  L  +FF W  +Q  Y ++      L   L   +LF  A + 
Sbjct: 43  HMTPHLAGKIIGLQSNNVELGVRFFKWVCRQSSYCYDLDGRIQLLGVLVSRDLFGVAQKA 102

Query: 174 ----VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
               + E  DS+  + +++  L+ M     +     Y+ ++  LA          V+  M
Sbjct: 103 VVLLIQECEDSENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRM 162

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
             +      + Y T++  LCK G V        ++   G  +D  +   L+        +
Sbjct: 163 VNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDL 222

Query: 290 GKACDLLKDLV-DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           G+A  + + +  +   R +   Y+ +I GLC   + ++A++L +  V+    P   T   
Sbjct: 223 GEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTV 282

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
           L+    ++G  D   K+L +M                  + +E +I  A  VF ++   G
Sbjct: 283 LIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHG 342

Query: 409 YS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
               +  +N L+    + G V  A  L   M   N + N  +++  ++         +A 
Sbjct: 343 LCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAF 402

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
               ++++   +P    YN L  G CK G+++ A  +    + +    P  F +   I  
Sbjct: 403 LLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNS-MNSAGLEPDGFTFTALIDG 461

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           +C+ G  E+   +L  M ++G   +EV  +A+I G CK G  ++   +F N+ E + LT 
Sbjct: 462 LCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTT 521

Query: 588 ANTI-VYDEILIEHMKKKTADLVLSGLKFFGL 618
           A+T   + + L +  K   A+ +L  +  +GL
Sbjct: 522 AHTFNCFLDALGKDYKLNEANAMLGKMMKYGL 553



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 88/453 (19%), Positives = 194/453 (42%), Gaps = 60/453 (13%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+I E   +  KM ++   P +  + A+I     E  + +  ++   M+K   + ++  
Sbjct: 325 EGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRT 384

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ GLC+  +  +   L R + +NG+L DR  Y +L++G   EG++  A ++   + 
Sbjct: 385 YNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMN 444

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +G   D   + ++I GLC++ + ++A  +    V+  ++ D  T   L+    ++G+  
Sbjct: 445 SAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAK 504

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI-------------------------- 394
           +   L   M + +    A     F   +GK+ ++                          
Sbjct: 505 DVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILI 564

Query: 395 ---------MMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                     ++L + E +K  G S +V  Y I++  L   G V++A  +   M    + 
Sbjct: 565 EGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVS 624

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG------------L 492
            N  ++++ ++ HV++G +  A +  + +++    P+   Y+ L  G            L
Sbjct: 625 PNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARAL 684

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
              G++DA  +   +   N  S            HV R  + +  +++ +E+ + G P  
Sbjct: 685 SSTGDLDARSLSSEENDNNCLSS-----------HVFRLMDVDHALKIRDEIKKCGVPTE 733

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
           ++  + ++ G+CK G + EA ++  ++ +  L 
Sbjct: 734 DLY-NFLVVGLCKEGRIIEADQLTQDMVKHGLF 765



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 96/445 (21%), Positives = 175/445 (39%), Gaps = 44/445 (9%)

Query: 176 ELMDSQGRIAEMLEILEKMRR---NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
           ELM+   R+++  +    +RR   N   PD   Y  ++     E  L+    ++  M   
Sbjct: 387 ELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSA 446

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            +E D   +  LI GLCK GR+ + + +   M + GI +D   +  LI+G    GK    
Sbjct: 447 GLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDV 506

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
           C L +++V++        +N  +  L +  + ++A  +    ++  L P   T   L+  
Sbjct: 507 CFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEG 566

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-S 411
               G      K+L +M++   S            +    R+  A  +   +   G S +
Sbjct: 567 HCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPN 626

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS------------IAIQCHVE 459
              Y +L+ A ++ G + +A  +   M     + NS  +S            I  +    
Sbjct: 627 HFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSS 686

Query: 460 SGDI----LEACECHNKI--------------------IEMSQVPSVAAYNCLTKGLCKI 495
           +GD+    L + E  N                      I+   VP+   YN L  GLCK 
Sbjct: 687 TGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKE 746

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTIL-HVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
           G I  A  L +D    V  G    K   +I+ H C++ + +  +E +  +      P+  
Sbjct: 747 GRIIEADQLTQD---MVKHGLFPDKAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFA 803

Query: 555 ICSAIISGMCKHGTLEEARKVFTNL 579
               +I G+   G ++EA+K+ ++L
Sbjct: 804 SYCWVIHGLRNEGRVQEAQKLVSDL 828


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 135/614 (21%), Positives = 245/614 (39%), Gaps = 117/614 (19%)

Query: 114 LRR----VTPDLVAEVL-KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLF 168
           LRR    +T  +V  VL  V + P L ++FF WA +Q GY H  A Y+ALA  L  +   
Sbjct: 96  LRRCRGFLTDSVVVAVLGAVRDAPELCARFFLWAERQVGYSHTGACYDALADALGFDGRA 155

Query: 169 RAADQV-----PELMDSQGRIA--------------EMLEILEKMRRNLCKPDVFAYTAM 209
           R A+++      E  +  GR+               E LE L +++    +P    Y A+
Sbjct: 156 RDAERLLREIGEEDREVLGRLLNVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNAL 215

Query: 210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR---------------- 253
           ++VL++   +D   RV +EM +     D          LCK GR                
Sbjct: 216 VQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDFKLD 275

Query: 254 -VVRGH---------------ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
            V+  H                    M+ N  + +   Y  L+ G + + ++G    ++ 
Sbjct: 276 TVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIIN 335

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN---------- 347
            ++  G   +  ++NS++   C  K +  AYKL          P +   N          
Sbjct: 336 MMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQE 395

Query: 348 ----PLLV---------------------------CCAEMGRMDNFFKLLAQMEKLKF-S 375
               P L+                           C   +G+ D  F+L+ +M +  F  
Sbjct: 396 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVP 455

Query: 376 VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL 434
             +   K   FL     ++  A  +F+E+K  G +  V  Y IL+ +  + G +++A +L
Sbjct: 456 DTSTYSKVITFLC-HATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 514

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           F +MR +      ++++  I  ++++  + +A +  +++++    P+   Y  L  GLCK
Sbjct: 515 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 574

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEF---------------KYALTILHVCRSGEAEKIIE 539
            G I  A  +    +G   S  ++F                Y   +  +C++ + +   E
Sbjct: 575 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 634

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           +L+ M   GC PN ++  A+I G CK G ++ A++VF  + +   L   +T  Y  ++  
Sbjct: 635 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHT--YTSLIDR 692

Query: 600 HMKKKTADLVLSGL 613
             K    DL +  L
Sbjct: 693 MFKDGRLDLAMKVL 706



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 183/438 (41%), Gaps = 24/438 (5%)

Query: 131 NPTLASKFFHWAGKQKGYKHNFASYNALAYC-----LSRNNLFRAADQVPELMDSQGRIA 185
           NP+L +   H    +K Y + +   N +  C         N+F  +    E + S   + 
Sbjct: 345 NPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLD 404

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
              +I  +M    C  +        R L      D   ++ +EM +     D   Y  +I
Sbjct: 405 LAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVI 464

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
             LC   +V +   LF+EMK  G+  D   Y +LI+     G + +A  L +++   G  
Sbjct: 465 TFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCS 524

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
             +  Y ++I    + KQ  +A  +F   V     P+  T   L+    + G +   F++
Sbjct: 525 PTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEV 584

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEI 425
            A++  +  S +AD + +F      E+R  +A             +V  Y  L+  L + 
Sbjct: 585 YAKL--IGTSDSADSDFYFPC----EDRHTLA------------PNVVTYGALVDGLCKA 626

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
            +V  A  L   M     E N + +   I    ++G I  A E   ++ +   +PSV  Y
Sbjct: 627 HKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTY 686

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
             L   + K G +D AM ++   L +  + P    Y   I  +CR GE+EK +++L+ M 
Sbjct: 687 TSLIDRMFKDGRLDLAMKVLSQMLKDSCT-PNVVTYTAMIDGLCRIGESEKALKLLSLME 745

Query: 546 QEGCPPNEVICSAIISGM 563
           ++GC PN V  +A+I G+
Sbjct: 746 EKGCSPNVVTYTALIDGL 763



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 108/474 (22%), Positives = 197/474 (41%), Gaps = 69/474 (14%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E +  L +MR N C P+V  Y  ++     ++ L  C R+   M  +    +   + +L+
Sbjct: 294 EAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLV 353

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              C        ++L   M   G      +Y + I  + G+ K+    DLL DL +  Y 
Sbjct: 354 HSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSP-DLL-DLAEKIY- 410

Query: 306 ADLGIYNSIIGG---------LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            ++   N ++           LC V +FDKA++L +  ++    PD ST + ++      
Sbjct: 411 GEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHA 470

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVP 413
            +++  F L  +M+ +   V  D+  +   +    K   I  A  +FEE++  G S +V 
Sbjct: 471 TKVEKAFLLFQEMKMV--GVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVV 528

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            Y  L+ A L+  +V +A  +F +M       N +++   +    ++G+I +A E + K+
Sbjct: 529 TYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL 588

Query: 474 IEMSQ----------------VPSVAAYNCLTKGLCKIGEIDAA-----MMLVRDC---- 508
           I  S                  P+V  Y  L  GLCK  ++D A      ML   C    
Sbjct: 589 IGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNH 648

Query: 509 ------------LGNVASG-------------PTEFKYALTILHVCRSGEAEKIIEVLNE 543
                        G + S              P+   Y   I  + + G  +  ++VL++
Sbjct: 649 IVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQ 708

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           M ++ C PN V  +A+I G+C+ G  E+A K+ + + E+      N + Y  ++
Sbjct: 709 MLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG--CSPNVVTYTALI 760


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 176/389 (45%), Gaps = 2/389 (0%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PD + Y  +IR L         L V E+M +     DV+ Y  L+   CK     +  +
Sbjct: 163 EPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMK 222

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L  EM + G   D   Y V++ G+  EG+V  A + LK+L   G   +   YN ++ GL 
Sbjct: 223 LLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLF 282

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
             ++++ A KL E        P+  T N L+      G ++   ++L QM +   +  + 
Sbjct: 283 TAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSL 342

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM 438
                     K+++I  A++  E +  +G Y  +  YN L+ AL   GEV  A+ L  ++
Sbjct: 343 SYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQL 402

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
           +        +S++  I    ++G   EA E  +++      P +  Y+ +  GLC+   I
Sbjct: 403 KDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRI 462

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           + A+      + ++   PT   Y   +L +C+  E    I++   M   GC PNE   + 
Sbjct: 463 EEAVRTFCK-VQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTI 521

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTE 587
           ++ G+   G ++EAR++F  L  R ++ +
Sbjct: 522 LVEGLAYEGLVKEARELFAQLCSRGVVNK 550



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 102/244 (41%), Gaps = 19/244 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
            KG   N  ++N L   L R  L   A +V E M   G                   +I 
Sbjct: 299 HKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIH 358

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + +E +E M    C PD+ +Y  ++  L     +D  + +  ++K       +++Y T+I
Sbjct: 359 KAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVI 418

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GL K G+     EL  EM   G+  D   Y  +  GL  E ++ +A      + D G R
Sbjct: 419 DGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIR 478

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
               +YN+I+ GLC+ ++   A  LF   +     P+ ST   L+   A  G +    +L
Sbjct: 479 PTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEAREL 538

Query: 366 LAQM 369
            AQ+
Sbjct: 539 FAQL 542


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 193/407 (47%), Gaps = 16/407 (3%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+     +L K+ +  C+PD   +  +IR L  E  +   L ++++   +  + DV+ Y 
Sbjct: 200 RLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYG 259

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TL+ GLCK G       L R M +     +   Y  +I+ L  + +V +A +L  +++  
Sbjct: 260 TLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITK 319

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD---FSTVNPLLVCCAEMGRM 359
           G   D+  YNS+I  LC + ++     L    V   + P+   FSTV   L  C E G +
Sbjct: 320 GISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDAL--CKE-GMI 376

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKG-YSSVPIYN 416
                ++  M  +K  V  D+  +   + G   R  M  A+ VF+ +  KG   +V  YN
Sbjct: 377 AIAHDVVDMM--IKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYN 434

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKII 474
           IL+    +I  + KA+ L  +M    L  ++++++  I   CHV  G +  A    ++++
Sbjct: 435 ILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHV--GRLQHAIALFHEMV 492

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
              Q+P +  Y  L   LCK   +  AM+L++   G+         Y + I  +CR+GE 
Sbjct: 493 ASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADI-LVYNIAIDGMCRAGEL 551

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           E   ++ + ++ +G  P+    + +I G+CK G L+EA K+F  + E
Sbjct: 552 EAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDE 598



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 181/440 (41%), Gaps = 45/440 (10%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+I E L + +K      +PDV  Y  ++  L    N  A +R+   M +     +V+A
Sbjct: 233 EGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIA 292

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI-------------------- 280
           Y T+I  LCK  +V     LF EM   GI  D   Y  LI                    
Sbjct: 293 YNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMV 352

Query: 281 ---------------EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
                          + L  EG +  A D++  ++  G   D+  Y +++ G C   + D
Sbjct: 353 NSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMD 412

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +A K+F+  V     P+  + N L+    ++ RMD    LL QM      + AD   +  
Sbjct: 413 EAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQ--GLIADTVTYNT 470

Query: 386 FLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            + G     R+  A+ +F E+   G    +  Y IL+  L +   + +A+ L   + G N
Sbjct: 471 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 530

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           L+ + L ++IAI     +G++  A +  + +      P V  YN +  GLCK G +D A 
Sbjct: 531 LDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEAN 590

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            L R    N  S      Y   I    RS E     ++L EM  EG    +V  + +I  
Sbjct: 591 KLFRKMDENGCSRDGCI-YNTIIRGFLRSNETFGATQLLQEMLAEGFSA-DVSTTTLIVE 648

Query: 563 MCKHGTLEEARKVFTNLRER 582
           M     L+++   F  LR R
Sbjct: 649 MLSDDGLDQS---FERLRLR 665



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 174/399 (43%), Gaps = 12/399 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P    +T ++  +A  ++    L +  +M    +  DV     LI   C   R+     +
Sbjct: 148 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSV 207

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             ++ + G   D   +  LI GL  EGK+G+A  L    +  G++ D+  Y +++ GLC+
Sbjct: 208 LAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCK 267

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           V     A +L    VQ +  P+    N ++    +  ++   F L ++M  +   ++ D+
Sbjct: 268 VGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEM--ITKGISPDI 325

Query: 381 ---EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGK 437
                    L    E   +   + E +  K   +V +++ ++ AL + G +  A  +   
Sbjct: 326 FTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDM 385

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M    +E + ++++  +  H    ++ EA +  + ++    VP+V +YN L  G C+I  
Sbjct: 386 MIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQR 445

Query: 498 IDAAMMLVR--DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           +D AM L+      G +A   T   Y   I  +C  G  +  I + +EM   G  P+ V 
Sbjct: 446 MDKAMGLLEQMSLQGLIADTVT---YNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVT 502

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
              ++  +CK+  L EA  +   +    L  +A+ +VY+
Sbjct: 503 YRILLDYLCKNHHLAEAMVLLKAIEGSNL--DADILVYN 539



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 96/198 (48%), Gaps = 3/198 (1%)

Query: 177 LMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD     +EM   +++ + M    C P+V +Y  +I      + +D  + + E+M    
Sbjct: 401 LMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQG 460

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           + AD + Y TLI GLC  GR+     LF EM  +G + D   Y +L++ L     + +A 
Sbjct: 461 LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAM 520

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            LLK +  S   AD+ +YN  I G+CR  + + A  LF       L PD  T N ++   
Sbjct: 521 VLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGL 580

Query: 354 AEMGRMDNFFKLLAQMEK 371
            + G +D   KL  +M++
Sbjct: 581 CKRGLLDEANKLFRKMDE 598


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 203/419 (48%), Gaps = 13/419 (3%)

Query: 177 LMDSQGRIAEMLEI---LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L+D  G++  + E+     +M+   C PD+  Y  +I        +      + EMK + 
Sbjct: 271 LIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNG 330

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           ++ +V+ Y TLI   CK G +    +L  +M+  G+L +   Y  LI+     G + +A 
Sbjct: 331 LKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAW 390

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            LL D++ +G + ++  Y +++ GLC+  +  +A ++F   ++D ++P+      L+   
Sbjct: 391 KLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGY 450

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSS 411
            +  RM++  K+L QM +   ++  DL  +   + G   + ++     + EE+K +G S+
Sbjct: 451 IKAERMEDAMKILKQMTEC--NIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISA 508

Query: 412 VP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            P I   ++ A  + G+   AL  F +M+ + +E   +++ + I    E+G +  A +  
Sbjct: 509 NPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYF 568

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYALTILHV 528
            +++ +   P+VA Y  L  GLC    I++A  L  +  C G     P    +   I   
Sbjct: 569 CRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMT---PDITAFTALIDGN 625

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
            + G  ++ + +++ MT+     +  + ++++SG  + G L +ARK F  + E+ +L E
Sbjct: 626 LKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPE 684



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 115/491 (23%), Positives = 210/491 (42%), Gaps = 24/491 (4%)

Query: 117 VTPDLVAEVL-KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFR-AADQV 174
           + P  V+++L  +  +P LA KFF WAG Q G++H   SY  + + + R  ++  A D V
Sbjct: 68  LAPIWVSKILLGLREDPKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTV 127

Query: 175 PEL-----MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
            E+     MD    +  + ++L    RN+C      +  +  V      L+     +  M
Sbjct: 128 KEVIMNSRMDMGFPVCNIFDMLWS-TRNICVSGSGVFDVLFSVFVELGLLEEANECFSRM 186

Query: 230 K--KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
           +  + L +A    ++   +     G++VR  + F +M   GI      Y V+I+ L  EG
Sbjct: 187 RNFRTLPKARSCNFLLHRLSKSGNGQLVR--KFFNDMIGAGIAPSVFTYNVMIDYLCKEG 244

Query: 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
            +  +  L   + + G   D+  YNS+I G  +V   ++   LF         PD  T N
Sbjct: 245 DLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYN 304

Query: 348 PLLVCCAEMGRMDNFFKLLAQMEK--LKFSVAADLEKFFEFLVGKEERIMMALDVFEELK 405
            L+ C  +  +M   F+  ++M+   LK +V         F   KE  +  A+ +  +++
Sbjct: 305 GLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFC--KEGMMQGAIKLLXDMR 362

Query: 406 GKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
             G   +P    Y  L+ A  + G + +A  L   M    +++N ++++  +    ++G 
Sbjct: 363 RTGL--LPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGR 420

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
           ++EA E    +++    P+   Y  L  G  K   ++ AM +++  +      P    Y 
Sbjct: 421 MIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQ-MTECNIKPDLILYG 479

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             I   C   + E+   +L EM   G   N VI + II    K G   +A   F  +++ 
Sbjct: 480 SIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDV 539

Query: 583 KLLTEANTIVY 593
            +  EA  + Y
Sbjct: 540 GV--EATIVTY 548



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 16/158 (10%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G + N A Y +L   L  NN   +A ++ + M  +G                  PD+ A+
Sbjct: 575 GLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGM----------------TPDITAF 618

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           TA+I       NL   L +   M +  +E D+  Y +L+ G  + G + +  + F EM E
Sbjct: 619 TALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIE 678

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
            GIL +  +   L+      G++ +A +L  ++    Y
Sbjct: 679 KGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMAY 716


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 185/415 (44%), Gaps = 8/415 (1%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           V + +  +G + E   +  +M+   C PDV  Y ++I       +L+   ++  EM+K  
Sbjct: 206 VIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSG 265

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
             ADV+ Y  LI    K GR+ + +  F EMK  G++ +   +   ++    EG V +A 
Sbjct: 266 CAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAM 325

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            L   +   G   +   Y S++ G C+  + D A  L +  V   L P+  T   ++   
Sbjct: 326 KLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGL 385

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFF---EFLVGKEERIMMALDVFEELKGKGYS 410
            + G++     +L+ ME+        L        F+    ER   ALD+  ++K KG  
Sbjct: 386 CKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSER---ALDLLNQMKNKGME 442

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
             V +Y  L+  L +  +V +A  L  KM G  L  N++ ++  +    ++G   EA   
Sbjct: 443 LDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVAL 502

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
            +KI++    P+V  Y  L  GLCK G I  A+      +  +   P    Y   I   C
Sbjct: 503 LHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNK-MRELGLDPNVQAYTALIDGFC 561

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           + G   K + ++NEM  +G   ++V+ +++I G  K   L++A  + T + E  L
Sbjct: 562 KIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGL 616



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 177/423 (41%), Gaps = 25/423 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIA------------------ 185
           ++ G   +  +YNAL  C S+      A      M  QG +A                  
Sbjct: 262 RKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLV 321

Query: 186 -EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E +++  +MR     P+ F YT+++        LD  + + +EM    +  +V+ Y  +
Sbjct: 322 QEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVM 381

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + GLCK G+V     +   M+  G+  +  +Y  LI G        +A DLL  + + G 
Sbjct: 382 VDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGM 441

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+ +Y ++I GLC+ ++ D+A  L        L P+      ++    + G+      
Sbjct: 442 ELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVA 501

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
           LL ++    F    ++  +   + G  K   I  A+  F +++  G   +V  Y  L+  
Sbjct: 502 LLHKILDSGFQ--PNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDG 559

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
             +IG + KA++L  +M    + ++ + ++  I  +++  ++ +A     K+IE      
Sbjct: 560 FCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLD 619

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           +  Y C   G C +  +  A  ++ + +G   + P +  Y   I    + G  E+   + 
Sbjct: 620 LYCYTCFISGFCNMNMMQEARGVLSEMIGTGIT-PDKTVYNCLIRKYQKLGNMEEASSLQ 678

Query: 542 NEM 544
           NEM
Sbjct: 679 NEM 681



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 105/224 (46%), Gaps = 11/224 (4%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           N + Y    + LF+A           G+ +E + +L K+  +  +P+V  Y A+I  L  
Sbjct: 479 NTVIYTTIMDALFKA-----------GKESEAVALLHKILDSGFQPNVVTYCALIDGLCK 527

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
             ++   +  + +M++  ++ +V AY  LI G CK G + +   L  EM + G+ +D+ +
Sbjct: 528 AGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVV 587

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           Y  LI+G + +  +  A  L   +++SG + DL  Y   I G C +    +A  +    +
Sbjct: 588 YTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMI 647

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
              + PD +  N L+    ++G M+    L  +ME +  S   D
Sbjct: 648 GTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMESVLSSCTED 691



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 79/156 (50%), Gaps = 11/156 (7%)

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGE-IDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
           ++ ++  VP+V  +N +   LCK GE ++A  + VR  +  +   P    Y   I    +
Sbjct: 190 RLFDLLPVPNVFTFNIVIDFLCKEGELVEARALFVR--MKAMGCSPDVVTYNSLIDGYGK 247

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            G+ E++ ++++EM + GC  + V  +A+I+   K G +E+A   F  ++ + ++  AN 
Sbjct: 248 CGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVV--ANV 305

Query: 591 IVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKG 626
           + +   +    K+    LV   +K F   ++++ +G
Sbjct: 306 VTFSTFVDAFCKEG---LVQEAMKLF---AQMRVRG 335


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/482 (23%), Positives = 207/482 (42%), Gaps = 62/482 (12%)

Query: 140 HWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLC 199
           HW     G K +   YN +   L   N  +  +     M   G                 
Sbjct: 142 HWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWG----------------I 185

Query: 200 KPDVFAYTAMIRVLA-----------------------------------AERNLDACLR 224
           KPDV  +  +I+ L                                     E +LD  LR
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALR 245

Query: 225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGL 283
           + E+M +       ++   ++ G CK GRV       +EM  ++G   D+  +  L+ GL
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGL 305

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
              G V  A +++  ++  GY  D+  YNS+I GLC++ +  +A +  +  +  D +P+ 
Sbjct: 306 CKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNT 365

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG----KEERIMMALD 399
            T N L+    +  +++   + LA++   K  +  D+  F   + G    +  R+  A++
Sbjct: 366 VTYNTLISTLCKENQVEEATE-LARVLTSK-GILPDVCTFNSLIQGLCLTRNHRV--AME 421

Query: 400 VFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV 458
           +FEE++ KG       YN+L+ +L   G++ +AL +  +M       + ++++  I    
Sbjct: 422 LFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC 481

Query: 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE 518
           ++  I EA E  +++       +   YN L  GLCK   ++ A  L+ D +      P +
Sbjct: 482 KANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLM-DQMIMEGQKPDK 540

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
           F Y   + H CR G+ +K  +++  MT  GC P+ V    +ISG+CK G +E A K+  +
Sbjct: 541 FTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRS 600

Query: 579 LR 580
           ++
Sbjct: 601 IQ 602



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 183/419 (43%), Gaps = 13/419 (3%)

Query: 181 QGRIAEMLEILEKM-RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +GR+ + L  +++M  ++   PD + +  ++  L    ++   + + + M ++  + DV 
Sbjct: 272 EGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVY 331

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y ++I GLCK G V    E   +M       +   Y  LI  L  E +V +A +L + L
Sbjct: 332 TYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVL 391

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   D+  +NS+I GLC  +    A +LFE        PD  T N L+      G++
Sbjct: 392 TSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKL 451

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSSVPI-Y 415
           D    +L QME    S  A     +  L+    K  +I  A ++F+E++  G S   + Y
Sbjct: 452 DEALNMLKQME---LSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTY 508

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+  L +   V+ A  L  +M     + +  +++  +      GDI +A +    +  
Sbjct: 509 NTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTS 568

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEA 534
               P +  Y  L  GLCK G ++ A  L+R   +  +A  P    Y   I  + R  + 
Sbjct: 569 NGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTP--HAYNPVIQGLFRKRKT 626

Query: 535 EKIIEVLNEMTQEG-CPPNEVICSAIISGMCKHGT-LEEARKVFTNLRERKLLTEANTI 591
            + I +  EM ++    P+ V    +  G+C  G  + EA      L E+  + E +++
Sbjct: 627 TEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSL 685



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/478 (21%), Positives = 204/478 (42%), Gaps = 24/478 (5%)

Query: 124 EVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR 183
           + L+ + + + A + F+ A K+  +    A Y  +   L R+                G 
Sbjct: 55  DSLRSQADDSAALRLFNLASKKPNFSPEPALYEEILLRLGRS----------------GS 98

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMAYV 242
             +M +ILE M+ + C+     +  +I   A     D  L V   M  D  ++ D   Y 
Sbjct: 99  FDDMRKILEDMKNSGCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYN 158

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++  L  G  +        +M   GI  D + + VLI+ L    ++  A  +L+D+   
Sbjct: 159 RMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSY 218

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D   + +I+ G       D A ++ E  V+   +    +VN ++    + GR+++ 
Sbjct: 219 GLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDA 278

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILM 419
              + +M   +     D   F   + G  K   +  A+++ + +  +GY   V  YN ++
Sbjct: 279 LNFIQEMSN-QDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L ++GEVK+A+    +M   +   N+++++  I    +   + EA E    +     +
Sbjct: 338 SGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL 397

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P V  +N L +GLC       AM L  + + +    P EF Y + I  +C  G+ ++ + 
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEE-MRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +L +M   GC  + +  + +I G CK   + EA ++F  +    +    N++ Y+ ++
Sbjct: 457 MLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGV--SRNSVTYNTLI 512



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 120/272 (44%), Gaps = 20/272 (7%)

Query: 98  KNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNA 157
           K   ++  Q++T       VT + +   L  EN    A++        KG   +  ++N+
Sbjct: 347 KEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVL-TSKGILPDVCTFNS 405

Query: 158 L--AYCLSRNN-----LF---RAADQVPE------LMDS---QGRIAEMLEILEKMRRNL 198
           L    CL+RN+     LF   R+    P+      L+DS   +G++ E L +L++M  + 
Sbjct: 406 LIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG 465

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C   V  Y  +I        +     +++EM+   V  + + Y TLI GLCK  RV    
Sbjct: 466 CARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAS 525

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           +L  +M   G   D+  Y  L+      G + KA D+++ +  +G   D+  Y ++I GL
Sbjct: 526 QLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGL 585

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           C+  + + A KL        +A      NP++
Sbjct: 586 CKAGRVEVASKLLRSIQMKGIALTPHAYNPVI 617


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 177/392 (45%), Gaps = 2/392 (0%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E LE L  M+ N   P      +++ +L     +     V+EEM K  +++ ++ +  +I
Sbjct: 165 EALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNIMI 224

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
             LC+ G+  +  +    M+  G+  +   Y  +I G    GK   A  + K + D   +
Sbjct: 225 NILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLK 284

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D   YNS I  LC+ ++ ++A  +    ++  L P+  T N L+  C   G +D  F  
Sbjct: 285 PDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAY 344

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
             +M       +          +  E+RI  A D+ +E++ KG    V  YNI +     
Sbjct: 345 RDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCR 404

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G  KKAL LF +M   N+     +++  I    +   + EA E   K I+   +P +  
Sbjct: 405 CGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIM 464

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           +N L  G C  G ID A  L+++ + N    P E  +   +   CR  + E+  ++L+EM
Sbjct: 465 FNALIDGHCVNGNIDRAFQLLKE-MDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEM 523

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
            + G  P+ +  + +ISG  K G +++A +VF
Sbjct: 524 KERGIKPDHISYNTLISGYSKRGDMKDALEVF 555



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 161/370 (43%), Gaps = 33/370 (8%)

Query: 147 GYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           G K N  +YN +   YCL                  +G+     +I + M+    KPD +
Sbjct: 247 GVKPNVVTYNTVINGYCL------------------RGKFEAASKIFKTMKDKNLKPDCY 288

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y + I  L  ER ++    V  ++ +  +  + + Y  LI G C  G + +      EM
Sbjct: 289 TYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEM 348

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              GI+     Y +LI  L  E ++ +A D++K++ + G   D+  YN  I G CR    
Sbjct: 349 MNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNA 408

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA----DL 380
            KA  LF+  V+ ++ P   T   L+    +  RM          EK K S+      D+
Sbjct: 409 KKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMS------EAEEKFKKSIKEGMLPDI 462

Query: 381 EKFFEFLVGK--EERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFGK 437
             F   + G      I  A  + +E+   K       +N LM       +V++A  L  +
Sbjct: 463 IMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDE 522

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M+   ++ + +S++  I  + + GD+ +A E  ++++ +   P++  YN L +G  KIGE
Sbjct: 523 MKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGE 582

Query: 498 IDAAMMLVRD 507
            D A  L+R+
Sbjct: 583 ADHAEELLRE 592



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 145/341 (42%), Gaps = 55/341 (16%)

Query: 145 QKGYKHNFASYNALAY-CLSRNNLFRAADQVPELMDS------------------QGRIA 185
           + G   N  +YNAL   C ++ +L +A     E+M+                   + RI 
Sbjct: 315 ESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIE 374

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E  +++++MR    +PDV  Y   I       N    L +++EM +  +   V  Y +LI
Sbjct: 375 EAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLI 434

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
               K  R+    E F++  + G+L D  ++  LI+G    G + +A  LLK++ ++   
Sbjct: 435 DVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVV 494

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D   +N+++ G CR ++ ++A KL +   +  + PD  + N L+   ++ G M +    
Sbjct: 495 PDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKD---- 550

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
                                          AL+VF+E+   G+  ++  YN L+    +
Sbjct: 551 -------------------------------ALEVFDEMLSLGFDPTLLTYNALIQGYSK 579

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
           IGE   A  L  +M+   +  +  ++   I+    + D++E
Sbjct: 580 IGEADHAEELLREMQSKGITPDDSTYLYVIEAMKTNDDLVE 620



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 19/221 (8%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRN--------------NLFRAADQVPELMDSQGRIAEM 187
           ++KG + +  +YN     YC   N              N+    +    L+D  G+   M
Sbjct: 384 REKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRM 443

Query: 188 LEILEKMRRNLCK---PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  EK ++++ +   PD+  + A+I       N+D   ++ +EM    V  D + + TL
Sbjct: 444 SEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTL 503

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + G C+  +V    +L  EMKE GI  D   Y  LI G    G +  A ++  +++  G+
Sbjct: 504 MQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGF 563

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
              L  YN++I G  ++ + D A +L        + PD ST
Sbjct: 564 DPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDST 604


>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 127/507 (25%), Positives = 227/507 (44%), Gaps = 37/507 (7%)

Query: 83  RHLSPIARFITD--AFRKNQFQWGPQVVTELSKL-RRVTPDLVAEVLKVENNPTLASKFF 139
           RH  PI R +    + R N   W P+    L  L R + P LV  VL+ +++  +A  FF
Sbjct: 130 RH--PIVREVCRLISLRSN---WNPKFEENLRHLLRSLNPRLVCAVLRSQDDERIALDFF 184

Query: 140 HWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLC 199
           +WA +Q  Y+H+   Y  +   LS+  L + A ++  LM  +G        +E+      
Sbjct: 185 YWADRQWRYRHDAIVYYTMLDILSKTRLCQGARRILRLMTRRG--------IER------ 230

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
            P+ F+Y  +    A    L   LR+   M+K  VE D+    T I  L KG ++ +   
Sbjct: 231 SPEAFSYVMVSYSRAGM--LRNALRILTLMQKAGVEPDLSICNTAIYVLVKGNKLEKALR 288

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
               MK  GI  D   Y  LI+G     ++  A +L+ ++   G   D   Y +++  LC
Sbjct: 289 FLERMKVAGIEPDIVSYNCLIKGYCDVHRIDDALELIAEMPFKGCPPDKVSYYTVMAFLC 348

Query: 320 RVKQFDKAYKLFEVTVQD-DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV-- 376
           + ++ ++  +L E  VQ+ +L PD  T N L+   ++ G  D+    L + E+  F +  
Sbjct: 349 KDRKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDALVFLREAEEKGFHIDK 408

Query: 377 ---AADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
              +A ++ F      K + I  A  +  ++  KG +  V  Y  ++     +G++ +A 
Sbjct: 409 VGYSAVVDSF-----CKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAK 463

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            +  +M     + N++++++ +     +G  LEA E  N   E    P+   Y+ +  GL
Sbjct: 464 KMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMHGL 523

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
            + G++  A  L R+ +      P      L I  +CR+       + L E   +GC  N
Sbjct: 524 RREGKLSEACDLTREMIEK-GFLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKGCAVN 582

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNL 579
            V  +++I G C+ G L+ A  +  ++
Sbjct: 583 VVNFTSVIYGFCQIGDLDAALSMLEDM 609



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 178/419 (42%), Gaps = 8/419 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMAY 241
           RI + LE++ +M    C PD  +Y  ++  L  +R ++   R+ E M ++  +  D + Y
Sbjct: 317 RIDDALELIAEMPFKGCPPDKVSYYTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQVTY 376

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI  L K G         RE +E G  ID+  Y  +++       + KA  L+ D+  
Sbjct: 377 NTLIYALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYS 436

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  Y +II G CRV + D+A K+ +   +    P+  T   LL      G+   
Sbjct: 437 KGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLE 496

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
             +++   E+  ++  A         + +E ++  A D+  E+  KG+   P+  N+L+ 
Sbjct: 497 AREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPVDINLLIQ 556

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           +L     V  A     +       VN ++F+  I    + GD+  A      +   ++ P
Sbjct: 557 SLCRNQNVVGAKKYLEECLHKGCAVNVVNFTSVIYGFCQIGDLDAALSMLEDMYLSNKHP 616

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
               Y  L   L K   +D A  L+   LG     PT   Y   I   C+ G  + ++++
Sbjct: 617 DAITYTTLFDALGKKSRLDEASELIVKMLGK-GIDPTPVTYRAVIHRFCQWGRVDDMMKL 675

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           L +M      P + + + +I  +C  G  EEA K+   +       +A T     ILIE
Sbjct: 676 LEKMIAR--QPFKTVYNQVIEKLCYFGNREEAEKLLGKVLRTASKLDAKTC---HILIE 729



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/455 (21%), Positives = 175/455 (38%), Gaps = 60/455 (13%)

Query: 154 SYNALAYCLSRNN-------LFRAADQVPELMDSQG------------RIAEMLEILEKM 194
           +YN L Y LS++          R A++    +D  G             I +   ++  M
Sbjct: 375 TYNTLIYALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDM 434

Query: 195 RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
               C PDV  YTA+I        +D   ++ ++M K   + + + Y  L+ GLC  G+ 
Sbjct: 435 YSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKS 494

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
           +   E+    +E+    +   Y  ++ GL  EGK+ +ACDL +++++ G+  +    N +
Sbjct: 495 LEAREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPVDINLL 554

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME-KLK 373
           I  LCR +    A K  E  +    A +      ++    ++G +D    +L  M    K
Sbjct: 555 IQSLCRNQNVVGAKKYLEECLHKGCAVNVVNFTSVIYGFCQIGDLDAALSMLEDMYLSNK 614

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKAL 432
              A      F+ L GK+ R+  A ++  ++ GKG    P+ Y  ++    + G V   +
Sbjct: 615 HPDAITYTTLFDAL-GKKSRLDEASELIVKMLGKGIDPTPVTYRAVIHRFCQWGRVDDMM 673

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            L  KM                                     +++ P    YN + + L
Sbjct: 674 KLLEKM-------------------------------------IARQPFKTVYNQVIEKL 696

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           C  G  + A  L+   L   +    +  + L   ++   G A    +V  +M +    P+
Sbjct: 697 CYFGNREEAEKLLGKVLRTASKLDAKTCHILIESYLI-DGNALSAYKVACQMFRRNLIPD 755

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
             +C  +   +   G   EA  +     ER + TE
Sbjct: 756 LKLCEKVTKKLVLDGMPAEADDLMLRFVERGIQTE 790


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 120/485 (24%), Positives = 209/485 (43%), Gaps = 29/485 (5%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G + N   YN L   L+  +  +  +     M SQG                 +PDV  +
Sbjct: 156 GVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQG----------------IEPDVVTF 199

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +I  L   R     + + EEM    V  D   + TL+ G  + G +     L   M E
Sbjct: 200 NTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSE 259

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G         VLI G    G+VG A   ++  +  G+  D   +++ + GLC+    D 
Sbjct: 260 MGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDH 319

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A K+  + +Q+   PD  T + ++ C    G ++    ++ QM  +      D   F   
Sbjct: 320 ALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQM--VDSGCLPDTTTFNTL 377

Query: 387 LVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           +V    E ++  ALD+  EL  KG S +V  +NIL+ AL ++G+   A+ LF +M+    
Sbjct: 378 IVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGC 437

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP-SVAAYNCLTKGLCKIGEIDAAM 502
             + ++++I I     SG + +A +   K +E+S  P S   YN +  GLCK   I+ A 
Sbjct: 438 TPDEVTYNILIDNLCSSGKLAKALDLL-KEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAE 496

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
             V D +     G     +   I  +C +   +   E++++M  EG  PN V  ++I++ 
Sbjct: 497 E-VFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTH 555

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI---LIEHMKKKTADLVLSGLKFFGLE 619
            CK G + +A  +   +       E + + Y  +   L +  + + A  +L G++  G++
Sbjct: 556 YCKQGNISKAADILQTMTANGF--EVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMK 613

Query: 620 SKLKA 624
              KA
Sbjct: 614 PTPKA 618



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 167/389 (42%), Gaps = 6/389 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + L  +++   +  +PD   ++  +  L    ++D  L+V   M ++  E DV  Y
Sbjct: 280 GRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTY 339

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T+I  LC  G +     +  +M ++G L D   +  LI  L  E ++ +A DL ++L  
Sbjct: 340 STVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTV 399

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++  +N +I  LC+V     A +LFE        PD  T N L+      G++  
Sbjct: 400 KGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAK 459

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
              LL +ME      +          + K  RI  A +VF+++   G     I +N L+ 
Sbjct: 460 ALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLID 519

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L     +  A  L  +M    L+ N+++++  +  + + G+I +A +    +       
Sbjct: 520 GLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEV 579

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKII 538
            V  Y  L  GLCK     AA+ L+R   G    G  PT   Y   I  + R       +
Sbjct: 580 DVVTYATLINGLCKARRTQAALKLLR---GMRMKGMKPTPKAYNPVIQSLFRGNNGRDAL 636

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            +  EMT+ G PP+      +  G+C+ G
Sbjct: 637 SLFREMTEVGGPPDAFTYKIVFRGLCRGG 665



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 158/357 (44%), Gaps = 25/357 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+G + +  +Y+ +  CL  N                G + E   I+ +M  + C PD  
Sbjct: 329 QEGCEPDVYTYSTVINCLCNN----------------GELEEAKGIVNQMVDSGCLPDTT 372

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            +  +I  L  E  L+  L +  E+    +  +V  +  LI  LCK G       LF EM
Sbjct: 373 TFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEM 432

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K +G   D   Y +LI+ L   GK+ KA DLLK++  SG       YN+II GLC+ ++ 
Sbjct: 433 KSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRI 492

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           ++A ++F+      +  +  T N L+  +C AE  R+D+  +L+ QM  +   +  +   
Sbjct: 493 EEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAE--RIDDAAELVDQM--ISEGLQPNNVT 548

Query: 383 FFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
           +   L    K+  I  A D+ + +   G+   V  Y  L+  L +    + AL L   MR
Sbjct: 549 YNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMR 608

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
              ++    +++  IQ      +  +A     ++ E+   P    Y  + +GLC+ G
Sbjct: 609 MKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGG 665



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 146/335 (43%), Gaps = 52/335 (15%)

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS----GYRADLGIYNSIIGGLCR 320
           +++G+   R +Y  +I  L   G  G A DL+K LV      G+   LG+  S IG   R
Sbjct: 82  RDDGLTPSRDVYEEIIRKL---GTAG-AFDLMKVLVGEMRREGHEVGLGLVQSFIGSYAR 137

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           ++ FD A+ L  V+ Q D+                                  F V A+ 
Sbjct: 138 LQLFDDAFDL--VSNQLDM----------------------------------FGVQANT 161

Query: 381 EKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
           E +   L  + +  +I +    + E+  +G    V  +N ++ AL    + + A+ +  +
Sbjct: 162 EVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEE 221

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M   ++  +  +F+  ++  VE G I  A     ++ EM   P+    N L  G CK+G 
Sbjct: 222 MSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGR 281

Query: 498 IDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           +  A+  ++     +A G  P    ++  +  +C++G  +  ++VL  M QEGC P+   
Sbjct: 282 VGDALGYIQQ---EIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYT 338

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            S +I+ +C +G LEEA+ +   + +   L +  T
Sbjct: 339 YSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTT 373



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 26/209 (12%)

Query: 145 QKGYKHNFASYNALA--YCLSRNNLFRAADQVPELMDSQG-------------------R 183
            +G + N  +YN++   YC  + N+ +AAD + + M + G                   R
Sbjct: 539 SEGLQPNNVTYNSILTHYC-KQGNISKAAD-ILQTMTANGFEVDVVTYATLINGLCKARR 596

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
               L++L  MR    KP   AY  +I+ L    N    L ++ EM +     D   Y  
Sbjct: 597 TQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKI 656

Query: 244 LIMGLCKGGRVVR-GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +  GLC+GG  ++   +   EM +NG + + + + +L EGL+  G        ++ +V+ 
Sbjct: 657 VFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGLLNLGMDDYLIRAIELIVEK 716

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
               +  I  S I G  R++++  A   F
Sbjct: 717 ANFRESDI--SAIRGYLRIRKYYDAIATF 743


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 185/376 (49%), Gaps = 6/376 (1%)

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
           A   ++ VL      +   R++EEM  + +   V+ + TLI G C+ G ++R  E+F EM
Sbjct: 149 ACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEM 208

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           +  GI+    +Y +LI GL  + K+ +A  + + + + G   ++  YN+++ G C++   
Sbjct: 209 RVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANA 268

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +A +L++  + + L PD  T   L+    + G M     L   M  +KFSV  ++  + 
Sbjct: 269 KQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNM--IKFSVTPNIAVYN 326

Query: 385 EFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
             +    K   +  A+ +F EL+    S  V  Y+IL+  L  +   ++A  +F KM   
Sbjct: 327 SLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKE 386

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            +  NS++++  I    + G + +A E  +++ E    P+V  ++ L  G CKI  + AA
Sbjct: 387 GILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAA 446

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           M +  + +    S P    Y   I   C+ G  ++ +++ ++M   G  PN    S ++ 
Sbjct: 447 MGIYSEMVIKSLS-PDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLD 505

Query: 562 GMCKHGTLEEARKVFT 577
           G+CK G + +A ++FT
Sbjct: 506 GLCKDGKISDALELFT 521



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 117/505 (23%), Positives = 222/505 (43%), Gaps = 44/505 (8%)

Query: 109 TELSKLR--RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNN 166
           +ELS+L+  + TP++  E++ V     L  +      K  G      + N L Y L +  
Sbjct: 103 SELSRLKSSKFTPNVYGELIIVLCKMELVEEALSMYHKV-GAALTIQACNVLLYVLVKT- 160

Query: 167 LFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVW 226
                          GR   +  I E+M  N   P V  +  +I     + +L     ++
Sbjct: 161 ---------------GRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMF 205

Query: 227 EEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
           +EM+   +   V+ Y  LI GLC   ++     + R M+E G+  +   Y  L++G    
Sbjct: 206 DEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKL 265

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
               +A  L +D++  G   D+  +  +I GLC+  +   A  LF   ++  + P+ +  
Sbjct: 266 ANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVY 325

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL 404
           N L+    ++G +     L  ++E+  F V+ D+  +   + G     R   A ++FE++
Sbjct: 326 NSLIDAYCKVGDVSEAMALFLELER--FEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKM 383

Query: 405 KGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
             +G  +  + YN L+    + G++ KAL +  +M    +E N ++FS  I  + +  ++
Sbjct: 384 TKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNL 443

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
             A   +++++  S  P V  Y  +  G CK G +  A+ L  D L N   G T   Y +
Sbjct: 444 QAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDN---GITPNCYTI 500

Query: 524 TIL--HVCRSGEAEKIIEVLNEMTQEGCP-------------PNEVICSAIISGMCKHGT 568
           + L   +C+ G+    +E+  E  +   P              N V  +A+I G+C+ G 
Sbjct: 501 SCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQ 560

Query: 569 LEEARKVFTNLRERKLLTEANTIVY 593
             +A K+F+++R   L  + + ++Y
Sbjct: 561 FSKAVKLFSDMRRYGL--QPDEVIY 583



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 118/514 (22%), Positives = 216/514 (42%), Gaps = 81/514 (15%)

Query: 110 ELSKLRRVTPD-LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLF 168
           ++  L  +TPD L+  VL   + P  A +FF+ A ++     N   Y+A+ + L  + L 
Sbjct: 21  QVVSLSSLTPDSLITTVLNCRS-PWKALEFFNAAPEK-----NIQLYSAIIHVLVGSKLL 74

Query: 169 RAA-----DQVPELMDS-------QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE 216
             A     D V  L+ S       Q   +E    L +++ +   P+V  Y  +I VL   
Sbjct: 75  SHARYLLNDLVQNLVKSHKPYHACQLAFSE----LSRLKSSKFTPNV--YGELIIVLCKM 128

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
             ++  L ++ ++   L    + A   L+  L K GR      ++ EM  NG+      +
Sbjct: 129 ELVEEALSMYHKVGAALT---IQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITF 185

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
           G LI+G   +G + +A ++  ++   G    + +Y  +I GLC   + ++A  +     +
Sbjct: 186 GTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMRE 245

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
             + P+  T N L         MD + KL    +                          
Sbjct: 246 VGVYPNVYTYNTL---------MDGYCKLANAKQ-------------------------- 270

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           AL +++++ G+G    V  + IL+  L + GE+K A  LF  M   ++  N   ++  I 
Sbjct: 271 ALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLID 330

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
            + + GD+ EA     ++      P V  Y+ L +GLC +   + A        GN+   
Sbjct: 331 AYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEA--------GNIFEK 382

Query: 516 PTE-------FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
            T+         Y   I   C+ G+ +K +E+ ++MT+ G  PN +  S +I G CK   
Sbjct: 383 MTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRN 442

Query: 569 LEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
           L+ A  +++ +  + L    + + Y  ++  H K
Sbjct: 443 LQAAMGIYSEMVIKSL--SPDVVTYTAMIDGHCK 474



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/439 (21%), Positives = 186/439 (42%), Gaps = 53/439 (12%)

Query: 113 KLRRVTPDLVAEVLKV----ENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSRN- 165
           +++ + P ++   + +     +N    ++  H A ++ G   N  +YN L   YC   N 
Sbjct: 209 RVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANA 268

Query: 166 ----NLFR---AADQVPE------LMDSQGRIAEMLEILEKMRRNL--------CKPDVF 204
                L++       VP+      L+D   +  EM     K  RNL          P++ 
Sbjct: 269 KQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEM-----KAARNLFVNMIKFSVTPNIA 323

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y ++I       ++   + ++ E+++  V  DV  Y  LI GLC   R      +F +M
Sbjct: 324 VYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKM 383

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            + GIL +   Y  LI+G   EGK+ KA ++   + ++G   ++  ++++I G C+++  
Sbjct: 384 TKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNL 443

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
             A  ++   V   L+PD  T   ++    + G M    KL + M  L   +  +     
Sbjct: 444 QAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDM--LDNGITPNCYTIS 501

Query: 385 EFLVG--KEERIMMALDVFEE----------LKGKG----YSSVPIYNILMGALLEIGEV 428
             L G  K+ +I  AL++F E          +   G     ++   Y  L+  L + G+ 
Sbjct: 502 CLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQF 561

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
            KA+ LF  MR   L+ + + + + ++   +   IL     H  +++   +P+ A +  L
Sbjct: 562 SKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKYILMM--LHADMLKFGVIPNSAVHVIL 619

Query: 489 TKGLCKIGEIDAAMMLVRD 507
            +   + G + +A    +D
Sbjct: 620 CECYQESGFLKSAQNCSKD 638


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 119/510 (23%), Positives = 227/510 (44%), Gaps = 45/510 (8%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEM 187
           G  HN  +Y+ L  C  R +    A  V   M   G                   RI++ 
Sbjct: 111 GISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDA 170

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           + ++ +M     +PD F +  +I  L         + + + M     + D++ Y  ++ G
Sbjct: 171 VSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNG 230

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK G +     L ++M++  I     IY  +I+ L     V  A +L  ++ + G R +
Sbjct: 231 LCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPN 290

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  YNS+I  LC   ++  A +L    ++  + P+  T + L+    + G++    KL  
Sbjct: 291 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 350

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLE 424
           +M  +K S+  D+  +   + G    +R+  A  +FE +  K  + +V  YN L+    +
Sbjct: 351 EM--IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCK 408

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ------ 478
              V + + LF +M    L  N+++++  I          +A EC N  I   Q      
Sbjct: 409 AKRVDEGMELFREMSQRGLVGNTVTYTTLIH------GFFQARECDNAQIVFKQMVSDGV 462

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           +P +  Y+ L  GLC  G+++ A+ +V + L      P  + Y + I  +C++G+ E   
Sbjct: 463 LPDIMTYSILLDGLCNNGKVETAL-VVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGW 521

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           ++   ++ +G  PN V  + ++SG C+ G  EEA  +F  ++E   L ++ T  Y+ ++ 
Sbjct: 522 DLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGT--YNTLIR 579

Query: 599 EHM----KKKTADLV--LSGLKFFGLESKL 622
            H+    K  +A+L+  +   +F G  S +
Sbjct: 580 AHLRDGDKAASAELIREMRSCRFVGDASTI 609



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 120/527 (22%), Positives = 218/527 (41%), Gaps = 77/527 (14%)

Query: 97  RKNQFQWGPQVVTELSKLRRVTPDLVA--EVLKVENNPTLASKFFHWAGK--QKGYKHNF 152
           R++Q      V+ ++ KL    PD+V    +L    +    S      G+  + GY+ + 
Sbjct: 128 RRSQLSLALAVLAKMMKLG-YEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDS 186

Query: 153 ASYNALAYCLSRNNLFRAADQV------------PELMD---------SQGRIAEMLEIL 191
            ++N L + L R+N  RA++ V            P+L+           +G I   L +L
Sbjct: 187 FTFNTLIHGLFRHN--RASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLL 244

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           +KM +   +P V  Y  +I  L   +N++  L ++ EM    +  +V+ Y +LI  LC  
Sbjct: 245 KKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNY 304

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           GR      L  +M E  I  +   +  LI+  V EGK+ +A  L  +++      D+  Y
Sbjct: 305 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 364

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           +S+I G C   + D+A  +FE+ +  D  P+  T N L+    +  R+D   +L  +M +
Sbjct: 365 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQ 424

Query: 372 LKF-----SVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEI 425
                   +    +  FF+       +I     VF+++   G    +  Y+IL+  L   
Sbjct: 425 RGLVGNTVTYTTLIHGFFQARECDNAQI-----VFKQMVSDGVLPDIMTYSILLDGLCNN 479

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G+V+ AL +F  ++   +E                                   P +  Y
Sbjct: 480 GKVETALVVFEYLQRSKME-----------------------------------PDIYTY 504

Query: 486 NCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           N + +G+CK G+++    L   C L      P    Y   +   CR G  E+   +  EM
Sbjct: 505 NIMIEGMCKAGKVEDGWDLF--CSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREM 562

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
            +EG  P+    + +I    + G    + ++   +R  + + +A+TI
Sbjct: 563 KEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTI 609



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 173/396 (43%), Gaps = 12/396 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P +  ++ ++  +A     D  + + E+M+   +  ++  Y  LI   C+  ++     +
Sbjct: 79  PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             +M + G   D      L+ G     ++  A  L+  +V+ GY+ D   +N++I GL R
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             +  +A  L +  V     PD  T   ++    + G +D    LL +ME+ K      +
Sbjct: 199 HNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVI 258

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
                  +   + +  AL++F E+  KG   +V  YN L+  L   G    A  L   M 
Sbjct: 259 YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 318

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              +  N ++FS  I   V+ G ++EA + ++++I+ S  P +  Y+ L  G C    +D
Sbjct: 319 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 378

Query: 500 AA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
            A     +M+ +DC  NV +      Y   I   C++   ++ +E+  EM+Q G   N V
Sbjct: 379 EAKHMFELMISKDCFPNVVT------YNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTV 432

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             + +I G  +    + A+ VF  +    +L +  T
Sbjct: 433 TYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMT 468



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 90/392 (22%), Positives = 165/392 (42%), Gaps = 8/392 (2%)

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
           LD  + ++ +M K      ++ +  L+  + K  +      L  +M+  GI  +   Y +
Sbjct: 62  LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           LI       ++  A  +L  ++  GY  D+   NS++ G C   +   A  L    V+  
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMM 396
             PD  T N L+       R      L+ +M  +      DL  +   + G  K   I +
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRM--VVKGCQPDLVTYGIVVNGLCKRGDIDL 239

Query: 397 ALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           AL + +++ +GK    V IYN ++ AL     V  AL LF +M    +  N ++++  I+
Sbjct: 240 ALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 299

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
           C    G   +A    + +IE    P+V  ++ L     K G++  A  L  + +   +  
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR-SID 358

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P  F Y+  I   C     ++   +   M  + C PN V  + +I G CK   ++E  ++
Sbjct: 359 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMEL 418

Query: 576 FTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           F  + +R L+   NT+ Y  ++    + +  D
Sbjct: 419 FREMSQRGLV--GNTVTYTTLIHGFFQARECD 448



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 125/300 (41%), Gaps = 6/300 (2%)

Query: 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
           K+  A +L  D+V S     +  ++ ++  + ++ +FD    L E      ++ +  T +
Sbjct: 61  KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120

Query: 348 PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELK 405
            L+ C     ++     +LA+M KL +    D+      L G     RI  A+ +  ++ 
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYE--PDIVTLNSLLNGFCHGNRISDAVSLVGQMV 178

Query: 406 GKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
             GY      +N L+  L       +A+ L  +M     + + +++ I +    + GDI 
Sbjct: 179 EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDID 238

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
            A     K+ +    P V  YN +   LC    ++ A+ L  + + N    P    Y   
Sbjct: 239 LALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTE-MDNKGIRPNVVTYNSL 297

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           I  +C  G       +L++M +    PN V  SA+I    K G L EA K++  + +R +
Sbjct: 298 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 357


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 185/404 (45%), Gaps = 8/404 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G + E L +LE+M R   K DVF Y+++I     E +++    +++EM +  V  +V+ 
Sbjct: 198 SGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVT 257

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ GL + GR     E+ ++M   G+  D   Y VL +GL   G+ G A  +L  +V
Sbjct: 258 YSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMV 317

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G       YN ++ GLC+  + D A+ + E+ V+    PD  T N LL      G++ 
Sbjct: 318 QKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIH 377

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNI 417
               L   +   KF V  D+      + G  KE R+  A  +   +   G   ++  YN 
Sbjct: 378 EAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNF 437

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKIIE 475
           L+   L   ++ +AL L+          NS+++S+ I   C ++   +     C  K+ +
Sbjct: 438 LIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFC--KMKD 495

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P+V  YN L   LC+   ++ A  L ++ + NV        + + I    ++G+ +
Sbjct: 496 SGIRPTVIDYNALMTSLCREDSLEQARSLFQE-MRNVNHNVDVVSFNIIIDGTLKAGDVK 554

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
              E+L+EM      P+ V  S +I+   K G L+EA  ++  +
Sbjct: 555 SAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKM 598



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/427 (25%), Positives = 197/427 (46%), Gaps = 12/427 (2%)

Query: 183 RIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           R+AE   + E M++   C+P++  Y+ +I        +   L + EEM+++ ++ADV  Y
Sbjct: 164 RLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVY 223

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI   C  G +  G ELF EM    +  +   Y  L++GL   G+  +A ++LKD+  
Sbjct: 224 SSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTA 283

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G R D+  Y  +  GLC+  +   A K+ ++ VQ    P   T N ++    +  RMD+
Sbjct: 284 RGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDD 343

Query: 362 FFKLLAQM-EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYNI 417
            F ++  M +K K   A       + L G   +I  A+D+++ L  + +   P     N 
Sbjct: 344 AFGVVEMMVKKGKKPDAVTYNTLLKGLCGA-GKIHEAMDLWKLLLSEKFHVKPDVFTCNN 402

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L + G V  A  +   M  + L+ N ++++  I+ ++ +  ++EA +     +E  
Sbjct: 403 LIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESG 462

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEK 536
             P+   Y+ +  GLCK+  +  A  L   C + +    PT   Y   +  +CR    E+
Sbjct: 463 FSPNSMTYSVMINGLCKMQMLSVARGLF--CKMKDSGIRPTVIDYNALMTSLCREDSLEQ 520

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
              +  EM       + V  + II G  K G ++ A+++ + +    L+ +A T     I
Sbjct: 521 ARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTF---SI 577

Query: 597 LIEHMKK 603
           LI    K
Sbjct: 578 LINRFSK 584



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/436 (22%), Positives = 187/436 (42%), Gaps = 46/436 (10%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK--DLVEADVMAYVTLI 245
             +L  M +     +V+    +++        D  + ++ +MK+  D V  D + Y TL+
Sbjct: 97  FSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLV 156

Query: 246 MGLCKGGRVVRGHELFREMKENG-ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
            G CK  R+     LF  MK+ G    +   Y VLI+     G+VG+   LL+++   G 
Sbjct: 157 NGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGL 216

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           +AD+ +Y+S+I   C     +   +LF+  ++  ++P+  T + L+      GR     +
Sbjct: 217 KADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASE 276

Query: 365 LLAQM-------EKLKFSV----------AADLEKFFEFLVG------------------ 389
           +L  M       + + ++V          A D  K  + +V                   
Sbjct: 277 MLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLC 336

Query: 390 KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           KE+R+  A  V E +  KG     + YN L+  L   G++ +A+ L+  +      V   
Sbjct: 337 KEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPD 396

Query: 449 SFSI--AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
            F+    IQ   + G + +A   H+ ++EM    ++  YN L +G     ++  A+ L +
Sbjct: 397 VFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWK 456

Query: 507 DCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
                V SG  P    Y++ I  +C+         +  +M   G  P  +  +A+++ +C
Sbjct: 457 YA---VESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLC 513

Query: 565 KHGTLEEARKVFTNLR 580
           +  +LE+AR +F  +R
Sbjct: 514 REDSLEQARSLFQEMR 529



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/419 (20%), Positives = 173/419 (41%), Gaps = 45/419 (10%)

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
           ++ +  KM   L  P   + +A+        +      V   M K     +V     ++ 
Sbjct: 61  VVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLK 120

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           G C+ G+  +   LF +MK N        Y  ++                          
Sbjct: 121 GFCRSGQCDKAMSLFSQMKRN--------YDCVV-------------------------P 147

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ-DDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
           D   YN+++ G C+ K+  +A  LFE   +  D  P+  T + L+ C  + G +     L
Sbjct: 148 DCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGL 207

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE-LKGKGYSSVPIYNILMGAL 422
           L +ME  +  + AD+  +   +     E  I    ++F+E L+ K   +V  Y+ LM  L
Sbjct: 208 LEEME--REGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGL 265

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
              G  ++A  +   M    +  + +++++      ++G   +A +  + +++  + P  
Sbjct: 266 GRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGT 325

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             YN +  GLCK   +D A  +V + +      P    Y   +  +C +G+  + +++  
Sbjct: 326 LTYNVVVNGLCKEDRMDDAFGVV-EMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWK 384

Query: 543 EMTQEG--CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
            +  E     P+   C+ +I G+CK G + +A ++ +++ E  L  + N + Y+  LIE
Sbjct: 385 LLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGL--QGNIVTYN-FLIE 440



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 126/300 (42%), Gaps = 40/300 (13%)

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST-------------------------- 345
           +++I  L + +Q+D    ++   V   + P F++                          
Sbjct: 46  STLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTK 105

Query: 346 ---------VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERI 394
                    +N +L      G+ D    L +QM++    V  D   +   + G  K +R+
Sbjct: 106 RGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRL 165

Query: 395 MMALDVFEELK--GKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
             A  +FE +K  G    ++  Y++L+    + GEV + L L  +M    L+ +   +S 
Sbjct: 166 AEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSS 225

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
            I      GDI    E  ++++     P+V  Y+CL +GL + G    A  +++D     
Sbjct: 226 LISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTAR- 284

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              P    Y +    +C++G A   I+VL+ M Q+G  P  +  + +++G+CK   +++A
Sbjct: 285 GVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDA 344



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 81/179 (45%)

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
           KM+ +  +P V  Y A++  L  E +L+    +++EM+      DV+++  +I G  K G
Sbjct: 492 KMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAG 551

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
            V    EL  EM    ++ D   + +LI      G + +A  L + +V  G+   + +++
Sbjct: 552 DVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFD 611

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           S++ G     + +K   L       D+  D    + +L C   M R  +  K+L +  +
Sbjct: 612 SLLKGYGLKGETEKIISLLHQMADKDVVLDSKLTSTILACLCHMSRNLDVEKILPKFSQ 670


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 191/436 (43%), Gaps = 42/436 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  +   ++E + ++   PDV  Y  +I        +D  L+V + M    V  DV+ Y
Sbjct: 163 GKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTY 219

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T++  LC  G++ +  E+     +     D   Y +LIE    E  VG+A  LL ++ +
Sbjct: 220 NTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRN 279

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + D+  YN +I G+C+  + D+A K           P+  T N +L      GR  +
Sbjct: 280 KGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMD 339

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
             KLL+ M +                                   KG S SV  +NIL+ 
Sbjct: 340 AEKLLSDMLR-----------------------------------KGCSPSVVTFNILIN 364

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L   G + +A+ +  KM       NSLS++  +    +   +  A E  + ++     P
Sbjct: 365 FLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYP 424

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            +  YN L   LCK G++D A+ ++   L +    P    Y   I  + + G+ E+ I++
Sbjct: 425 DIVTYNTLLTALCKDGKVDVAVEILNQ-LSSKGCSPVLITYNTVIDGLSKVGKTERAIKL 483

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           L+EM ++G  P+ +  S+++SG+ + G ++EA K F +L    L    N I Y+ I++  
Sbjct: 484 LDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDL--EGLGIRPNAITYNSIMLGL 541

Query: 601 MKKKTADLVLSGLKFF 616
            K +  D  +  L + 
Sbjct: 542 CKSRQTDRAIDFLAYM 557



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/429 (24%), Positives = 197/429 (45%), Gaps = 32/429 (7%)

Query: 144 KQKGYKHNFASYNAL--AYCLSR--NNLFRAADQV---PELMD---------SQGRIAEM 187
           +Q G   +  +YN L   YC S   +N  +  D++   P+++            G++ + 
Sbjct: 176 EQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQA 235

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           +E+L++  +  C PDV  YT +I     E  +   +++ +EM+    + DV+ Y  LI G
Sbjct: 236 MEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLING 295

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           +CK GR+    +    M   G   +   + +++  +   G+   A  LL D++  G    
Sbjct: 296 ICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPS 355

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  +N +I  LCR     +A  + E        P+  + NPLL    +  +MD   + L 
Sbjct: 356 VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLD 415

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLE 424
            M  +      D+  +   L    K+ ++ +A+++  +L  KG S V I YN ++  L +
Sbjct: 416 IM--VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSK 473

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
           +G+ ++A+ L  +MR   L+ + +++S  +      G + EA +  + +  +   P+   
Sbjct: 474 VGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAIT 533

Query: 485 YNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           YN +  GLCK  + D A+     M+ + C       PTE  Y + I  +   G A++ ++
Sbjct: 534 YNSIMLGLCKSRQTDRAIDFLAYMISKRC------KPTEATYTILIEGIAYEGLAKEALD 587

Query: 540 VLNEMTQEG 548
           +LNE+   G
Sbjct: 588 LLNELCSRG 596



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 173/389 (44%), Gaps = 26/389 (6%)

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D++   +LI G C+ G+  +   +   ++++G + D   Y VLI G    G++  A  +L
Sbjct: 148 DIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVL 207

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-VCCAE 355
             +       D+  YN+I+  LC   +  +A ++ +  +Q +  PD  T   L+   C E
Sbjct: 208 DRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKE 264

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SV 412
            G +    KLL +M         D+  +   + G  KE R+  A+     +   G   +V
Sbjct: 265 SG-VGQAMKLLDEMRN--KGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNV 321

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             +NI++ ++   G    A  L   M       + ++F+I I      G +  A +   K
Sbjct: 322 ITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEK 381

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILH 527
           +      P+  +YN L  G CK  ++D A+     M+ R C  ++ +      Y   +  
Sbjct: 382 MPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVT------YNTLLTA 435

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           +C+ G+ +  +E+LN+++ +GC P  +  + +I G+ K G  E A K+   +R + L  +
Sbjct: 436 LCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGL--K 493

Query: 588 ANTIVYDEILIEHMKKKTADLVLSGLKFF 616
            + I Y  ++    ++   D     +KFF
Sbjct: 494 PDIITYSSLVSGLSREGKVD---EAIKFF 519



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 159/350 (45%), Gaps = 21/350 (6%)

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           LV  G++      L+ +V  G   D+    S+I G CR+ +  KA  + E+  Q    PD
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL-----VGKEERIMMA 397
             T N L+    + G +DN  ++L +M     +VA D+  +   L      GK ++ M  
Sbjct: 184 VITYNVLISGYCKSGEIDNALQVLDRM-----NVAPDVVTYNTILRTLCDSGKLKQAMEV 238

Query: 398 LDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
           LD   +L+ + Y  V  Y IL+ A  +   V +A+ L  +MR    + + +++++ I   
Sbjct: 239 LD--RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGI 296

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
            + G + EA +  N +      P+V  +N + + +C  G    A  L+ D L    S P+
Sbjct: 297 CKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCS-PS 355

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
              + + I  +CR G   + I++L +M   GC PN +  + ++ G CK   ++ A +   
Sbjct: 356 VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLD 415

Query: 578 NLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
            +  R      + + Y+ +L    K    D+ +  L      ++L +KGC
Sbjct: 416 IMVSRGCY--PDIVTYNTLLTALCKDGKVDVAVEIL------NQLSSKGC 457



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 159/350 (45%), Gaps = 10/350 (2%)

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           L + G +  G +    M   G + D      LI G    GK  KA  +++ L  SG   D
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL- 366
           +  YN +I G C+  + D A ++ +   + ++APD  T N +L    + G++    ++L 
Sbjct: 184 VITYNVLISGYCKSGEIDNALQVLD---RMNVAPDVVTYNTILRTLCDSGKLKQAMEVLD 240

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
            Q++K  +          E    KE  +  A+ + +E++ KG    V  YN+L+  + + 
Sbjct: 241 RQLQKECYPDVITYTILIEATC-KESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKE 299

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G + +A+     M     + N ++ +I ++    +G  ++A +  + ++     PSV  +
Sbjct: 300 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTF 359

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           N L   LC+ G +  A+ ++   +      P    Y   +   C+  + ++ IE L+ M 
Sbjct: 360 NILINFLCRQGLLGRAIDILEK-MPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMV 418

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK---LLTEANTIV 592
             GC P+ V  + +++ +CK G ++ A ++   L  +    +L   NT++
Sbjct: 419 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVI 468



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 125/297 (42%), Gaps = 10/297 (3%)

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYT 207
           + +N  SY      ++ N + R+       M S GR  +  ++L  M R  C P V  + 
Sbjct: 308 FLNNMPSYGCQPNVITHNIILRS-------MCSTGRWMDAEKLLSDMLRKGCSPSVVTFN 360

Query: 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
            +I  L  +  L   + + E+M       + ++Y  L+ G CK  ++ R  E    M   
Sbjct: 361 ILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 420

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           G   D   Y  L+  L  +GKV  A ++L  L   G    L  YN++I GL +V + ++A
Sbjct: 421 GCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERA 480

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
            KL +   +  L PD  T + L+   +  G++D   K    +E L     A         
Sbjct: 481 IKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLG 540

Query: 388 VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM--RGL 441
           + K  +   A+D    +  K    +   Y IL+  +   G  K+AL L  ++  RGL
Sbjct: 541 LCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 597


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 124/561 (22%), Positives = 222/561 (39%), Gaps = 96/561 (17%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177
           TP  + E L+ + +   A + F+WA KQ  +  + + Y  +   L +   F    +V E 
Sbjct: 63  TPKQLIETLRRQTDEVAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEE 122

Query: 178 MDSQG----------------------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           M   G                       +  +++++E   R   KPD   Y  ++ VL  
Sbjct: 123 MKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYR--IKPDTRFYNVLLNVLVD 180

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
              L         M +  +  DV  +  LI  LCK  +V     +  EM   G+  D   
Sbjct: 181 ANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETT 240

Query: 276 Y-----------------------------------GVLIEGLVGEGKVGKACDLLKDLV 300
           +                                    VLI G   +G++ +A   +++ V
Sbjct: 241 FTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAV 300

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G+R D   YN+++ GLC++     A ++ +  +   L PD  T N L+    ++G ++
Sbjct: 301 SEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIE 360

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI-------------------------- 394
              K+L QM     S  A         + KE R+                          
Sbjct: 361 EAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLI 420

Query: 395 ---------MMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                      A+D+FEE+KGKG       YN+L+ +L    ++++AL L  +M      
Sbjct: 421 QGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCA 480

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            N + ++  I    ++  I EA E  +++           YN L  GLCK   ++ A  L
Sbjct: 481 RNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQL 540

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
           + D +      P +F Y   + H C++G+ +K  +++  MT  GC P+ V  + +ISG+C
Sbjct: 541 M-DQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLC 599

Query: 565 KHGTLEEARKVFTNLRERKLL 585
           K G ++ A ++  +++ + ++
Sbjct: 600 KAGRVQVASRLLRSIQMKGMV 620



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 178/416 (42%), Gaps = 7/416 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QGRI + L  +++      +PD F Y  ++  L    +    + V + M    ++ D+  
Sbjct: 286 QGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYT 345

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI GLCK G +    ++  +M       +   Y  +I  L  E +V +A ++ + L 
Sbjct: 346 YNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLT 405

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D+  +NS+I GLC       A  LFE        PD  T N L+       +++
Sbjct: 406 SKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLE 465

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNI 417
               LL +ME      A ++  +   + G  K +RI  A ++F+E++ +G S   + YN 
Sbjct: 466 EALNLLKEME--LNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNT 523

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L +   V+ A  L  +M    L  +  +++  +    ++GDI +A +    +    
Sbjct: 524 LIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSG 583

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P +  Y  L  GLCK G +  A  L+R  +       T   Y   I  + +     + 
Sbjct: 584 CNPDIVTYATLISGLCKAGRVQVASRLLRS-IQMKGMVLTPHAYNPVIQALFKRNRTHEA 642

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCK-HGTLEEARKVFTNLRERKLLTEANTIV 592
           + +  EM  +  PP+ +    +  G+C   G + EA      + ER  + E ++ V
Sbjct: 643 MRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFV 698



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 108/273 (39%), Gaps = 54/273 (19%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEM-------------------LEIL 191
           N  +YNA+   L + N    A ++  L+ S+G + ++                   +++ 
Sbjct: 377 NAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLF 436

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLD------------ACLR--------------- 224
           E+M+   C+PD F Y  +I  L + R L+             C R               
Sbjct: 437 EEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKN 496

Query: 225 --------VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
                   +++EM+   V  D + Y TLI GLCK  RV    +L  +M   G+  D+  Y
Sbjct: 497 KRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTY 556

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
             L+      G + KA D+++ +  SG   D+  Y ++I GLC+  +   A +L      
Sbjct: 557 NSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQM 616

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
             +       NP++    +  R     +L  +M
Sbjct: 617 KGMVLTPHAYNPVIQALFKRNRTHEAMRLFREM 649


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 125/503 (24%), Positives = 212/503 (42%), Gaps = 45/503 (8%)

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ 181
           V + LK E++ TLA ++F      K +KH   +Y  +   L+     R  D V  L+   
Sbjct: 46  VLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASE---REMDCVQYLLQQM 102

Query: 182 ----------------------GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL 219
                                 G   + L+   +M+    KP V  Y  ++  L  E   
Sbjct: 103 KLEGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRF 162

Query: 220 DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL 279
                ++  MKKD +E +V  Y  L+  LCK  RV   H+L  EM   G   D   Y  L
Sbjct: 163 QMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTL 222

Query: 280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339
           I  L   GKV +A +L      S     + +YN++I G+C+   F++A++L +  +   +
Sbjct: 223 ISSLCKLGKVKEARELAMSFTPS-----VPVYNALINGVCKEYTFEEAFQLLDEMMNKGI 277

Query: 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE-----FLVGKEERI 394
            P+  +   ++   ++ G ++    +LA+M       + +L  F       FL G     
Sbjct: 278 DPNVISYTTIINALSDAGNVELSLAVLAKM--FARGCSPNLHTFTSLIKGFFLKGGSHE- 334

Query: 395 MMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
             ALD ++ +  +G   +V  YN LM  L     +  A+ +F +M       N  ++S  
Sbjct: 335 --ALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSAL 392

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
           I  + ++GD+  A E  N +I     P+V AY C+   LC+    + A  L+ + +    
Sbjct: 393 IDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIEN-MQVEN 451

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
             P    +   I  +C SG  +  I+V ++M   GC PN    + ++  + K     EA 
Sbjct: 452 CPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAF 511

Query: 574 KVFTNLRERKL---LTEANTIVY 593
            +  ++  R +   L   NTI+Y
Sbjct: 512 GLVKDMEHRGIELNLVTYNTIIY 534



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 162/398 (40%), Gaps = 41/398 (10%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +   G +   L +L KM    C P++  +T++I+    +      L  W+ M ++ V  +
Sbjct: 291 LSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPN 350

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+AY  L+ GLC    +     +F +M+ NG   +   Y  LI+G    G +  A ++  
Sbjct: 351 VVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWN 410

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            ++  G   ++  Y  ++  LCR   F++AY L E    ++  P+  T N  +      G
Sbjct: 411 WMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSG 470

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYN 416
           R+D                                    A+ VF+++   G + +   YN
Sbjct: 471 RVD-----------------------------------WAIKVFDQMGNSGCFPNTTTYN 495

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+ +LL+     +A  L   M    +E+N ++++  I  +  +G + EA E   K++  
Sbjct: 496 ELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVR 555

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P     N +    CK G+++ A+ L+ D L      P    Y   I  +C     E+
Sbjct: 556 GTKPDAITVNIVIDAYCKQGKVNIAIQLM-DRLSAGKWHPDIIAYTSLISGICTHIGVEE 614

Query: 537 IIEVLNEMTQEGCPPN----EVICSAIISGMCKHGTLE 570
            I  L  M  EG  PN     V+   + S M   G ++
Sbjct: 615 AIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQ 652



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 101/235 (42%), Gaps = 20/235 (8%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ------------- 181
           AS+ ++W     G   N  +Y  +   L RN++F  A  + E M  +             
Sbjct: 405 ASEVWNWMITH-GCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFI 463

Query: 182 ------GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
                 GR+   +++ ++M  + C P+   Y  ++  L  +R       + ++M+   +E
Sbjct: 464 KGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIE 523

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            +++ Y T+I G C  G +    EL  +M   G   D     ++I+    +GKV  A  L
Sbjct: 524 LNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQL 583

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           +  L    +  D+  Y S+I G+C     ++A       + + ++P+ +T N L+
Sbjct: 584 MDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLV 638



 Score = 45.8 bits (107), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 20/142 (14%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           + +G + N  +YN +   YC +                  G + E LE+L KM     KP
Sbjct: 518 EHRGIELNLVTYNTIIYGYCCA------------------GMLGEALELLGKMVVRGTKP 559

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           D      +I     +  ++  +++ + +       D++AY +LI G+C    V       
Sbjct: 560 DAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYL 619

Query: 262 REMKENGILIDRAIYGVLIEGL 283
           R M   GI  + A + VL+  L
Sbjct: 620 RRMLSEGISPNVATWNVLVRHL 641


>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
          Length = 1161

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/467 (22%), Positives = 205/467 (43%), Gaps = 23/467 (4%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEMLEIL 191
           N  +YN + +   +   F+AA  V E M+                      R      +L
Sbjct: 259 NSVTYNTILHWYVKKGRFKAALCVLEDMERDSVQADVYTYNIMIDKLCRIKRSTRAFLLL 318

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           ++MR++   PD   Y  +I     E  ++    V+  M +  +   V  Y T+I G C+ 
Sbjct: 319 KRMRKDDLTPDECTYNTLINGFFREGKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRN 378

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
            R+ +   +  EM+  G++     Y  L+ G      +G A  L++DL   G   +  + 
Sbjct: 379 RRIDKALSILSEMQITGVMPSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITINKTMR 438

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
             +I G C+V +  KA ++ +   +D + PD  T + L+     M +M    ++L++M+K
Sbjct: 439 TILIDGFCQVGEISKAKQILKSMFEDGIDPDVITYSALINGMCRMAKMHETKEILSRMQK 498

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKK 430
                   L         K   +  AL  F ++  +G  + P I+N L+ A    G + +
Sbjct: 499 SGILPNDVLYTTLICYYCKAGYVKEALKHFVDIYRRGLVANPVIHNALLHAFYREGMITE 558

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A +    M  +N+  +S+SF+  I  +   G+I+ A   ++ ++     P+V  Y  L +
Sbjct: 559 AEHFRQYMSRMNISFDSVSFNRIIDSYCHRGNIVGAFSVYDDMVRYGYSPNVCTYQNLLR 618

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           GLC+ G +  A   +  CL ++     E  +   +L +CR G  ++ +++  +M +  C 
Sbjct: 619 GLCQGGHLVQARQFM-SCLLDIPFAIDEKTFNALLLGICRYGTLDEALDLCEKMIKNNCL 677

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           P+    + ++SG C+ G +  A  +   + E+ ++   +T+ Y  +L
Sbjct: 678 PDIHTYTILLSGFCRKGKILPALVILQMMLEKGVV--PDTVAYTCLL 722



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 199/430 (46%), Gaps = 23/430 (5%)

Query: 147  GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
            GY  N  +Y          NL R   Q   L+ ++  ++ +L+I   +       D   +
Sbjct: 605  GYSPNVCTYQ---------NLLRGLCQGGHLVQARQFMSCLLDIPFAI-------DEKTF 648

Query: 207  TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             A++  +     LD  L + E+M K+    D+  Y  L+ G C+ G+++    + + M E
Sbjct: 649  NALLLGICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVILQMMLE 708

Query: 267  NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV-DSGYRADLGIYNSIIGGLCRVKQFD 325
             G++ D   Y  L+ GL+ EG+V  A  +  +++   G  AD   YNS++ G  + +  +
Sbjct: 709  KGVVPDTVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSRNVN 768

Query: 326  KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
               ++     Q+++ P+ ++ N L+    + G+      L   M  ++  +  D   +  
Sbjct: 769  TIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYM--VRKGIRPDNVTYRL 826

Query: 386  FLVGKEE--RIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
             ++G  E   I +A+   E++  +G +    +++IL+ A  E  ++  AL +F  M+ L+
Sbjct: 827  LILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQVFNCMKWLH 886

Query: 443  LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
            +  +S +FS  I   +  G +  + +  ++++++   P+   Y  L    C++GEID A 
Sbjct: 887  MSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAF 946

Query: 503  MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
             L ++ +  +   P E   +  I  +CR G+ E+ + V + M + G  P     + ++  
Sbjct: 947  RL-KEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTVATFTTLMHS 1005

Query: 563  MCKHGTLEEA 572
            +CK   + +A
Sbjct: 1006 LCKESKIADA 1015



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 155/381 (40%), Gaps = 43/381 (11%)

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           +  ++ +L++  V E KV  A   +  + D G++A     N+I+  L    +    +   
Sbjct: 155 NHVVFELLVKAYVKERKVLDAAVAVLFMDDCGFKASPVSCNTILNALVEEGESKHVWLFL 214

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE 391
             ++        +T N LL      G       +L +M+    S +        + V K+
Sbjct: 215 RESLARKFPLGVTTCNILLNSLCTNGEFRKAEDMLQKMKSCHISNSVTYNTILHWYV-KK 273

Query: 392 ERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
            R   AL V E+++     + V  YNI++  L  I    +A  L  +MR  +L  +  ++
Sbjct: 274 GRFKAALCVLEDMERDSVQADVYTYNIMIDKLCRIKRSTRAFLLLKRMRKDDLTPDECTY 333

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +  I      G I  A    N ++  + VPSVA Y  +  G C+   ID A+ ++ + + 
Sbjct: 334 NTLINGFFREGKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSILSE-MQ 392

Query: 511 NVASGPTEFKYA-----------------------------------LTILHVCRSGEAE 535
                P+E  Y+                                   + I   C+ GE  
Sbjct: 393 ITGVMPSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITINKTMRTILIDGFCQVGEIS 452

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           K  ++L  M ++G  P+ +  SA+I+GMC+   + E +++ + +++  +L   N ++Y  
Sbjct: 453 KAKQILKSMFEDGIDPDVITYSALINGMCRMAKMHETKEILSRMQKSGIL--PNDVLYTT 510

Query: 596 ILIEHMKKKTADLVLSGLKFF 616
           ++  + K   A  V   LK F
Sbjct: 511 LICYYCK---AGYVKEALKHF 528



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 78/385 (20%), Positives = 154/385 (40%), Gaps = 37/385 (9%)

Query: 202  DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
            D  AY +++      RN++   R+  +M ++ V  +  +Y  L+ G  K G+  +   L+
Sbjct: 750  DCIAYNSLMNGYLKSRNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLY 809

Query: 262  REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            + M   GI  D   Y +LI GL   G +  A   L+ +V  G   D  +++ +I      
Sbjct: 810  KYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEK 869

Query: 322  KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
             +   A ++F       ++P   T + ++      G +D+  K+L +M  L+  +  +  
Sbjct: 870  SKMHNALQVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEM--LQVGLQPNHT 927

Query: 382  KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
             +                                  L+ A   +GE+ +A  L  +M+ +
Sbjct: 928  HYIA--------------------------------LVNAKCRVGEIDRAFRLKEEMKAI 955

Query: 442  NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
             +    ++ S  I+     G + EA    + ++    VP+VA +  L   LCK  +I  A
Sbjct: 956  GIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTVATFTTLMHSLCKESKIADA 1015

Query: 502  MMLVRDCLGNVASGPTE-FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
            + L R  L  +     +   Y + I  +C+       +++  EM  +G  PN      + 
Sbjct: 1016 LHLKR--LMELCRLRVDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNITTYITLT 1073

Query: 561  SGMCKHGTLEEARKVFTNLRERKLL 585
              M   G ++   ++  ++ ER L+
Sbjct: 1074 GAMYSTGRVQNGEELLEDIEERGLI 1098



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 90/192 (46%), Gaps = 2/192 (1%)

Query: 181  QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK-DLVEADVM 239
            +G +    ++L +M +   +P+   Y A++        +D   R+ EEMK   +V A+V 
Sbjct: 904  KGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAEV- 962

Query: 240  AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            A  ++I GLC+ G++     +F  M  +G++   A +  L+  L  E K+  A  L + +
Sbjct: 963  AESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTVATFTTLMHSLCKESKIADALHLKRLM 1022

Query: 300  VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
                 R D+  YN +I GLC+ K    A  L+       L P+ +T   L       GR+
Sbjct: 1023 ELCRLRVDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNITTYITLTGAMYSTGRV 1082

Query: 360  DNFFKLLAQMEK 371
             N  +LL  +E+
Sbjct: 1083 QNGEELLEDIEE 1094



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/402 (19%), Positives = 167/402 (41%), Gaps = 29/402 (7%)

Query: 107  VVTELSKLRRVTPDLVAEV-----LKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--A 159
            V+ ++   + V PD VA       L  E     AS  FH    ++G   +  +YN+L   
Sbjct: 701  VILQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNG 760

Query: 160  YCLSRN--------------NLFRAADQVPELMDS---QGRIAEMLEILEKMRRNLCKPD 202
            Y  SRN               ++  +     LM     +G+ ++ L + + M R   +PD
Sbjct: 761  YLKSRNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPD 820

Query: 203  VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
               Y  +I  L+    +D  ++  E+M  + +  D + +  LI    +  ++    ++F 
Sbjct: 821  NVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQVFN 880

Query: 263  EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
             MK   +      +  +I GL+ +G +  +  +L +++  G + +   Y +++   CRV 
Sbjct: 881  CMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVG 940

Query: 323  QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
            + D+A++L E      + P     + ++      G+++    + + M  ++  +   +  
Sbjct: 941  EIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSSM--MRSGMVPTVAT 998

Query: 383  FFEFL--VGKEERIMMALDVFEELK-GKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
            F   +  + KE +I  AL +   ++  +    V  YN+L+  L +   +  AL L+G+M+
Sbjct: 999  FTTLMHSLCKESKIADALHLKRLMELCRLRVDVVSYNVLITGLCKDKHISDALDLYGEMK 1058

Query: 440  GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
               L  N  ++         +G +    E    I E   +P+
Sbjct: 1059 SKGLWPNITTYITLTGAMYSTGRVQNGEELLEDIEERGLIPA 1100



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 3/170 (1%)

Query: 177  LMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
            L++++ R+ E+     + E+M+     P   A +++IR L     L+  + V+  M +  
Sbjct: 932  LVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSG 991

Query: 234  VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
            +   V  + TL+  LCK  ++     L R M+   + +D   Y VLI GL  +  +  A 
Sbjct: 992  MVPTVATFTTLMHSLCKESKIADALHLKRLMELCRLRVDVVSYNVLITGLCKDKHISDAL 1051

Query: 294  DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
            DL  ++   G   ++  Y ++ G +    +     +L E   +  L P +
Sbjct: 1052 DLYGEMKSKGLWPNITTYITLTGAMYSTGRVQNGEELLEDIEERGLIPAY 1101


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 125/503 (24%), Positives = 212/503 (42%), Gaps = 45/503 (8%)

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ 181
           V + LK E++ TLA ++F      K +KH   +Y  +   L+     R  D V  L+   
Sbjct: 46  VLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASE---REMDCVQYLLQQM 102

Query: 182 ----------------------GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL 219
                                 G   + L+   +M+    KP V  Y  ++  L  E   
Sbjct: 103 KLEGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRF 162

Query: 220 DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL 279
                ++  MKKD +E +V  Y  L+  LCK  RV   H+L  EM   G   D   Y  L
Sbjct: 163 QMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTL 222

Query: 280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339
           I  L   GKV +A +L      S     + +YN++I G+C+   F++A++L +  +   +
Sbjct: 223 ISSLCKLGKVKEARELAMSFTPS-----VPVYNALINGVCKEYTFEEAFQLLDEMMNKGI 277

Query: 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE-----FLVGKEERI 394
            P+  +   ++   ++ G ++    +LA+M       + +L  F       FL G     
Sbjct: 278 DPNVISYTTIINALSDAGNVELSLAVLAKM--FARGCSPNLHTFTSLIKGFFLKGGSHE- 334

Query: 395 MMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
             ALD ++ +  +G   +V  YN LM  L     +  A+ +F +M       N  ++S  
Sbjct: 335 --ALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSAL 392

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
           I  + ++GD+  A E  N +I     P+V AY C+   LC+    + A  L+ + +    
Sbjct: 393 IDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIEN-MQVEN 451

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
             P    +   I  +C SG  +  I+V ++M   GC PN    + ++  + K     EA 
Sbjct: 452 CPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAF 511

Query: 574 KVFTNLRERKL---LTEANTIVY 593
            +  ++  R +   L   NTI+Y
Sbjct: 512 GLVKDMEHRGIELNLVTYNTIIY 534



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 162/398 (40%), Gaps = 41/398 (10%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +   G +   L +L KM    C P++  +T++I+    +      L  W+ M ++ V  +
Sbjct: 291 LSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPN 350

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+AY  L+ GLC    +     +F +M+ NG   +   Y  LI+G    G +  A ++  
Sbjct: 351 VVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWN 410

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            ++  G   ++  Y  ++  LCR   F++AY L E    ++  P+  T N  +      G
Sbjct: 411 WMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSG 470

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYN 416
           R+D                                    A+ VF+++   G + +   YN
Sbjct: 471 RVD-----------------------------------WAIKVFDQMGNSGCFPNTTTYN 495

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+ +LL+     +A  L   M    +E+N ++++  I  +  +G + EA E   K++  
Sbjct: 496 ELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVR 555

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P     N +    CK G+++ A+ L+ D L      P    Y   I  +C     E+
Sbjct: 556 GTKPDAITVNIVIDAYCKQGKVNIAIQLM-DRLSAGKWHPDIIAYTSLISGICTHIGVEE 614

Query: 537 IIEVLNEMTQEGCPPN----EVICSAIISGMCKHGTLE 570
            I  L  M  EG  PN     V+   + S M   G ++
Sbjct: 615 AIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQ 652



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 101/235 (42%), Gaps = 20/235 (8%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ------------- 181
           AS+ ++W     G   N  +Y  +   L RN++F  A  + E M  +             
Sbjct: 405 ASEVWNWMITH-GCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFI 463

Query: 182 ------GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
                 GR+   +++ ++M  + C P+   Y  ++  L  +R       + ++M+   +E
Sbjct: 464 KGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIE 523

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            +++ Y T+I G C  G +    EL  +M   G   D     ++I+    +GKV  A  L
Sbjct: 524 LNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQL 583

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           +  L    +  D+  Y S+I G+C     ++A       + + ++P+ +T N L+
Sbjct: 584 MDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLV 638



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 20/165 (12%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           + +G + N  +YN +   YC +                  G + E LE+L KM     KP
Sbjct: 518 EHRGIELNLVTYNTIIYGYCCA------------------GMLGEALELLGKMVVRGTKP 559

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           D      +I     +  ++  +++ + +       D++AY +LI G+C    V       
Sbjct: 560 DAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYL 619

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           R M   GI  + A + VL+  L        A   L  ++ SG+  
Sbjct: 620 RRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFLDAVLGSGFET 664


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/525 (22%), Positives = 220/525 (41%), Gaps = 63/525 (12%)

Query: 132 PTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEIL 191
           P LA++  H   +++G + +  + NA+   LSR     +   +P+           L++ 
Sbjct: 151 PHLAAQLLHSLRRRRGVRPSLQAANAVLSALSR-----SPSTLPQ---------ASLDVF 196

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
             +      P+ + +  ++    ++  L   L     M+   +  D + Y TL+   C+ 
Sbjct: 197 RSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRK 256

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           G +     L   MK +GI   +  Y  L+      G + +A  +++ +   G+  DL  Y
Sbjct: 257 GMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTY 316

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLA-PDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           N +  GLC+  + D+A++L +   +   A PD  T N L+  C +     +  +LL +M 
Sbjct: 317 NVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMR 376

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVK 429
                            + KE ++  AL   E++  +G +  V  YN L+ A  + G V 
Sbjct: 377 DKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVA 436

Query: 430 KALYLFGKMRGLNLEVNSLSFSIA-------------------------IQCHVESGDIL 464
           KA  L  +M G  L++++ + +                           +   V  G ++
Sbjct: 437 KAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVM 496

Query: 465 EA----------CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN-VA 513
            A              +++IE   +PS++ YN L KGLC++  +  A+    D L   V 
Sbjct: 497 AAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAI----DKLNEFVE 552

Query: 514 SG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
            G  P E  Y + I   C+ G+ E      N+M +    P+ V C+ +++G+C HG L++
Sbjct: 553 KGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDK 612

Query: 572 ARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFF 616
           A K+F +  E+    + + I Y+ ++    K    D   + L FF
Sbjct: 613 ALKLFESWVEKG--KKVDVITYNTLIQSMCKVGDVD---TALHFF 652



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/466 (21%), Positives = 190/466 (40%), Gaps = 57/466 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS-------------------QGRI 184
           K+ G      +YN L    +R    + A +V E M +                    G++
Sbjct: 270 KRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKV 329

Query: 185 AEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
            E   + ++M R     PDV  Y  ++      R     LR+ EEM+   V+  ++ +  
Sbjct: 330 DEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNI 389

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           ++  LCK G++        ++ E G+  D   Y  LI+     G V KA  L+ ++V  G
Sbjct: 390 VVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKG 449

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            + D    N+++  LC++K+++ A +L     Q    PD                     
Sbjct: 450 LKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPD--------------------- 488

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL-KGKGYSSVPIYNILMGAL 422
                    + S    +  +F     KE     AL +++++ + K   S+  YN L+  L
Sbjct: 489 ---------EVSYGTVMAAYF-----KEYNPEPALRLWDQMIERKLIPSISTYNTLIKGL 534

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
             +  +K+A+    +     L  +  +++I I  + + GD+  A   HNK++E S  P V
Sbjct: 535 CRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDV 594

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
              N L  GLC  G++D A+ L    +           Y   I  +C+ G+ +  +   +
Sbjct: 595 VTCNTLMNGLCLHGKLDKALKLFESWVEK-GKKVDVITYNTLIQSMCKVGDVDTALHFFD 653

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           +M  +G  P+    + ++S + + G  EEA  +   L +   L+++
Sbjct: 654 DMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQS 699



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 111/477 (23%), Positives = 196/477 (41%), Gaps = 60/477 (12%)

Query: 110 ELSKLRRVTPDLVAEVLKVENNPTLASKFFHW-----------AGKQKGYKHNFASYNAL 158
           E+ +L    PD+V          TL    F W             + KG K    ++N +
Sbjct: 338 EMERLGTALPDVV-------TYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIV 390

Query: 159 AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
              L +                +G++ E L  LEK+      PDV  Y  +I       N
Sbjct: 391 VKSLCK----------------EGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGN 434

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
           +     + +EM    ++ D     T++  LCK  R     EL     + G + D   YG 
Sbjct: 435 VAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGT 494

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           ++     E     A  L   +++      +  YN++I GLCR+++  +A       V+  
Sbjct: 495 VMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKG 554

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS---VAADLEKFFEFLVGKEERIM 395
           L PD +T N ++    + G ++N F+   +M +  F    V  +       L GK ++  
Sbjct: 555 LVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDK-- 612

Query: 396 MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
            AL +FE    KG    V  YN L+ ++ ++G+V  AL+ F  M    L+ ++ ++++ +
Sbjct: 613 -ALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVL 671

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVA-AYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
               E+G    + E HN + +++    ++ ++ C    L K    D A   V++  G   
Sbjct: 672 SALSEAG---RSEEAHNMLHKLADSGKLSQSFAC---PLLKPSSADEAD--VKEHEGKPE 723

Query: 514 SGPTEF-------KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           +  +E         Y   +  +C  G+ ++   VL+EM Q+G P   V CS  I+ M
Sbjct: 724 AESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKGMP---VDCSTYITLM 777


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 182/378 (48%), Gaps = 6/378 (1%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           V  +M   G+ A  +E+L KM     K D   Y+ +I  L    +LD    ++ EM+   
Sbjct: 332 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 391

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  +++ Y  LI G C  GR   G +L R+M +  I  +   + VLI+  V EGK+ +A 
Sbjct: 392 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 451

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           +L K+++  G   D   Y S+I G C+    DKA ++ ++ V     P+  T N L+   
Sbjct: 452 ELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGY 511

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGY-S 410
            +  R+D+  +L  +M  L+  V AD   +   + G  E  ++ +A ++F+E+  +    
Sbjct: 512 CKANRIDDGLELFRKMS-LR-GVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPP 569

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           ++  Y IL+  L + GE +KAL +F K+    +E++   ++I I     +  + +A +  
Sbjct: 570 NIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 629

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
             +      P V  YN +  GLCK G +  A +L R  +      P  + Y + I     
Sbjct: 630 CSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRK-MEEDGHAPDGWTYNILIRAHLG 688

Query: 531 SGEAEKIIEVLNEMTQEG 548
            G+A K ++++ E+ + G
Sbjct: 689 DGDATKSVKLIEELKRCG 706



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 185/407 (45%), Gaps = 12/407 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR++E LE++++M     KPD+     ++  L         + + ++M +   + + + 
Sbjct: 269 EGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVT 328

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  ++  +CK G+     EL R+M+E  I +D   Y ++I+GL   G +  A +L  ++ 
Sbjct: 329 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEME 388

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   ++  YN +IGG C   ++D   KL    ++  + P+  T + L+    + G++ 
Sbjct: 389 MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLR 448

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
              +L  +M  +   +A D   +   + G  KE  +  A  + + +  KG   ++  +NI
Sbjct: 449 EAEELHKEM--IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNI 506

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+    +   +   L LF KM    +  ++++++  IQ   E G +  A E   +++   
Sbjct: 507 LINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRK 566

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK---YALTILHVCRSGEA 534
             P++  Y  L  GLC  GE + A+ +       +     E     Y + I  +C + + 
Sbjct: 567 VPPNIVTYKILLDGLCDNGESEKALEIFE----KIEKSKMELDIGIYNIIIHGMCNASKV 622

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           +   ++   +  +G  P     + +I G+CK G L EA  +F  + E
Sbjct: 623 DDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEE 669



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 189/415 (45%), Gaps = 8/415 (1%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + +++   M  +   P V  ++ +   +A  +  D  L + ++M+   +  ++     +I
Sbjct: 169 DAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMI 228

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              C+  ++        ++ + G   +   +  LI GL  EG+V +A +L+  +V+ G++
Sbjct: 229 NCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK 288

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            DL   N+++ GLC   +  +A  L +  V+    P+  T  P+L    + G+     +L
Sbjct: 289 PDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMEL 348

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSS-VPIYNILMGAL 422
           L +ME+   ++  D  K+   + G  K   +  A ++F E++ KG ++ +  YNIL+G  
Sbjct: 349 LRKMEER--NIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGF 406

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
              G       L   M    +  N ++FS+ I   V+ G + EA E H ++I     P  
Sbjct: 407 CNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDT 466

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             Y  L  G CK   +D A  +V D + +    P    + + I   C++   +  +E+  
Sbjct: 467 ITYTSLIDGFCKENHLDKANQMV-DLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFR 525

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +M+  G   + V  + +I G C+ G L  A+++F  +  RK+    N + Y  +L
Sbjct: 526 KMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV--PPNIVTYKILL 578



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 174/388 (44%), Gaps = 16/388 (4%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +P+   ++ +I  L  E  +   L + + M +   + D++   TL+ GLC  G+      
Sbjct: 253 EPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAML 312

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L  +M E G   +   YG ++  +   G+   A +LL+ + +   + D   Y+ II GLC
Sbjct: 313 LIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC 372

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK------ 373
           +    D A+ LF       +  +  T N L+      GR D+  KLL  M K K      
Sbjct: 373 KHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVV 432

Query: 374 -FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKA 431
            FSV  D      F+  KE ++  A ++ +E+  +G +   I Y  L+    +   + KA
Sbjct: 433 TFSVLID-----SFV--KEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKA 485

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
             +   M     + N  +F+I I  + ++  I +  E   K+     V     YN L +G
Sbjct: 486 NQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQG 545

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
            C++G+++ A  L ++ +      P    Y + +  +C +GE+EK +E+  ++ +     
Sbjct: 546 FCELGKLNVAKELFQEMVSRKVP-PNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMEL 604

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNL 579
           +  I + II GMC    +++A  +F +L
Sbjct: 605 DIGIYNIIIHGMCNASKVDDAWDLFCSL 632



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 136/305 (44%), Gaps = 26/305 (8%)

Query: 99  NQFQW--GPQVVTELSKLRRVTPDLVAEVLKVEN----NPTLASKFFHWAGKQKGYKHNF 152
           N  +W  G +++ ++ K R++ P++V   + +++         ++  H     +G   + 
Sbjct: 408 NAGRWDDGAKLLRDMIK-RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDT 466

Query: 153 ASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEMLEILEK 193
            +Y +L     + N    A+Q+ +LM S+G                   RI + LE+  K
Sbjct: 467 ITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRK 526

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M       D   Y  +I+       L+    +++EM    V  +++ Y  L+ GLC  G 
Sbjct: 527 MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE 586

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
             +  E+F +++++ + +D  IY ++I G+    KV  A DL   L   G +  +  YN 
Sbjct: 587 SEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNI 646

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           +IGGLC+     +A  LF    +D  APD  T N L+      G      KL+ ++++  
Sbjct: 647 MIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCG 706

Query: 374 FSVAA 378
           FSV A
Sbjct: 707 FSVDA 711



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 134/338 (39%), Gaps = 48/338 (14%)

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           L  GLV + K   A DL +D++ S     +  ++ +   + + KQ+D    L +      
Sbjct: 158 LRSGLV-DIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKG 216

Query: 339 LAPDFSTVNPLLVC-------CAEMGRMDNFFKLLAQMEKLKFSVAAD------------ 379
           +A +  T++ ++ C       C     M    KL  +   + FS   +            
Sbjct: 217 IAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEAL 276

Query: 380 --LEKFFEF-----------------LVGKEERIMMALDVFEELKGKGYSSVP---IYNI 417
             +++  E                  L GKE   M+ +D   E     Y   P    Y  
Sbjct: 277 ELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVE-----YGCQPNAVTYGP 331

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++  + + G+   A+ L  KM   N++++++ +SI I    + G +  A    N++    
Sbjct: 332 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 391

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
              ++  YN L  G C  G  D    L+RD +    + P    +++ I    + G+  + 
Sbjct: 392 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKIN-PNVVTFSVLIDSFVKEGKLREA 450

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
            E+  EM   G  P+ +  +++I G CK   L++A ++
Sbjct: 451 EELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQM 488



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
             G   + LEI EK+ ++  + D+  Y  +I  +     +D    ++  +    V+  V 
Sbjct: 583 DNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVK 642

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I GLCK G +     LFR+M+E+G   D   Y +LI   +G+G   K+  L+++L
Sbjct: 643 TYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEEL 702

Query: 300 VDSGYRADLGIYNSIIGGL 318
              G+  D      +I  L
Sbjct: 703 KRCGFSVDASTIKMVIDML 721


>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 123/482 (25%), Positives = 213/482 (44%), Gaps = 23/482 (4%)

Query: 103 WGPQVVTELSKL-RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           W P+   ++  L R + P  V  VL+ +++  +A KFF+WA +Q  Y+H+   Y ++   
Sbjct: 157 WNPKHEGQMRNLLRSLKPSQVCAVLRSQDDERVALKFFYWADRQWRYRHDPMVYYSMLEV 216

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221
           LS+  L + + +V  LM  +G           + R    P+ F+   M+    A +  DA
Sbjct: 217 LSKTKLCQGSRRVLVLMKRRG-----------IYRT---PEAFS-RVMVSYSRAGQLRDA 261

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
            L+V   M++  VE +++   T I    +  R+ +       M+  GI+ +   Y  +I 
Sbjct: 262 -LKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIR 320

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD-LA 340
           G     +V +A +LL+D+   G   D   Y +I+G LC+ K+  +   L +   ++  L 
Sbjct: 321 GYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLV 380

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400
           PD  T N L+    +    D     L   ++  F +           + KE R+  A D+
Sbjct: 381 PDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDL 440

Query: 401 FEELKGKGYS--SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV 458
             E+  KG+    V  Y  ++     +GEV KA  L   M     + N++S++  +    
Sbjct: 441 INEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMC 500

Query: 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-CLGNVASGPT 517
            +G  LEA E  N   E    P+   Y+ +  GL + G++  A  +VR+  L     GP 
Sbjct: 501 RTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPV 560

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
           E    L  L  CR G   +  + + E   +GC  N V  + +I G C++  L+ A  V  
Sbjct: 561 EINLLLQSL--CRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLD 618

Query: 578 NL 579
           ++
Sbjct: 619 DM 620



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/446 (19%), Positives = 186/446 (41%), Gaps = 54/446 (12%)

Query: 138 FFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKM-RR 196
           +F    ++KG++ +   Y+A+ + L +                +GR++E  +++ +M  +
Sbjct: 404 WFLKDAQEKGFRIDKLGYSAIVHALCK----------------EGRMSEAKDLINEMLSK 447

Query: 197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
             C PDV  YTA++        +D   ++ + M     + + ++Y  L+ G+C+ G+ + 
Sbjct: 448 GHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLE 507

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
             E+    +E+    +   Y V++ GL  EGK+ +ACD+++++V  G+       N ++ 
Sbjct: 508 AREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQ 567

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
            LCR  +  +A K  E  +    A +      ++    +   +D    +L  M       
Sbjct: 568 SLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDM------- 620

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFG 436
                    +L+ K        DVF             Y  L+  L + G + +A  L  
Sbjct: 621 ---------YLINKHA------DVF------------TYTTLVDTLGKKGRIAEATELMK 653

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           KM    ++   +++   I  + + G + +      K+I   +  ++  YN + + LC +G
Sbjct: 654 KMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMISRQKCRTI--YNQVIEKLCVLG 711

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           +++ A  L+   L   +    +  YAL   ++ + G      +V   M      P+  +C
Sbjct: 712 KLEEADTLLGKVLRTASRSDAKTCYALMEGYL-KKGVPLSAYKVACRMFNRNLIPDVKMC 770

Query: 557 SAIISGMCKHGTLEEARKVFTNLRER 582
             +   +   G ++EA K+   L ER
Sbjct: 771 EKLSKRLVLKGKVDEADKLMLRLVER 796



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 146/371 (39%), Gaps = 55/371 (14%)

Query: 237 DVMAYVTLI-----MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
           D M Y +++       LC+G R V        MK  GI      +  ++      G++  
Sbjct: 206 DPMVYYSMLEVLSKTKLCQGSRRV-----LVLMKRRGIYRTPEAFSRVMVSYSRAGQLRD 260

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A  +L  +  +G   +L I N+ I    R  + +KA +  E      + P+  T N ++ 
Sbjct: 261 ALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIR 320

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGY 409
              ++ R++   +LL  M         D   ++  +  + KE+RI+   D+ +++  K +
Sbjct: 321 GYCDLHRVEEAIELLEDMHSK--GCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKM-AKEH 377

Query: 410 SSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
             VP    YN L+  L +     +AL+     +     ++ L +S  +            
Sbjct: 378 GLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVH----------- 426

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
                                    LCK G +  A  L+ + L      P    Y   + 
Sbjct: 427 ------------------------ALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVN 462

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
             CR GE +K  ++L  M   G  PN V  +A+++GMC+ G   EAR++  N+ E    +
Sbjct: 463 GFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMM-NMSEEHWWS 521

Query: 587 EANTIVYDEIL 597
             N+I Y  I+
Sbjct: 522 -PNSITYSVIM 531


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 183/380 (48%), Gaps = 17/380 (4%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           L DS G++ + +E+L++M +  C PDV  YT +I     +  +   +++ +EM+      
Sbjct: 214 LCDS-GKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTP 272

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           DV+ Y  L+ G+CK GR+    +   +M  +G   +   + +++  +   G+   A  LL
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            D++  G+   +  +N +I  LCR     +A  + E   Q    P+  + NPLL    + 
Sbjct: 333 ADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKE 392

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI 414
            +MD   + L +M  +      D+  +   L    K+ ++  A+++  +L  KG S V I
Sbjct: 393 KKMDRAIEYLERM--VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLI 450

Query: 415 -YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN ++  L + G+  KA+ L  +MR  +L+ +++++S  +      G + EA +  ++ 
Sbjct: 451 TYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEF 510

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHV 528
             M   P+   +N +  GLCK  + D A+     M+ R C       P E  Y + I  +
Sbjct: 511 ERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGC------KPNETSYTILIEGL 564

Query: 529 CRSGEAEKIIEVLNEMTQEG 548
              G A++ +E+LNE+  +G
Sbjct: 565 AYEGMAKEALELLNELCNKG 584



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 186/411 (45%), Gaps = 9/411 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I   L +L++M      PDV  Y  ++R L     L   + V + M +     DV+ Y
Sbjct: 186 GEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITY 242

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI   C+   V    +L  EM++ G   D   Y VL+ G+  EG++ +A   L D+  
Sbjct: 243 TILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS 302

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           SG + ++  +N I+  +C   ++  A KL    ++   +P   T N L+      G +  
Sbjct: 303 SGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGR 362

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
              +L +M   +     +   +   L G  KE+++  A++  E +  +G Y  +  YN +
Sbjct: 363 AIDILEKMP--QHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTM 420

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + AL + G+V+ A+ +  ++         ++++  I    ++G   +A +  +++     
Sbjct: 421 LTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDL 480

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P    Y+ L  GL + G++D A+    +    +   P    +   +L +C+S + ++ I
Sbjct: 481 KPDTITYSSLVGGLSREGKVDEAIKFFHE-FERMGIRPNAVTFNSIMLGLCKSRQTDRAI 539

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           + L  M   GC PNE   + +I G+   G  +EA ++   L  + L+ +++
Sbjct: 540 DFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKKSS 590



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 207/497 (41%), Gaps = 23/497 (4%)

Query: 133 TLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
           TL+S + +  G   G+  +  S  AL    S N+L +        M   G + E  + LE
Sbjct: 77  TLSSGYSNSNGN--GHYSSVNSSFALEDVESNNHLRQ--------MVRTGELEEGFKFLE 126

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
            M  +   PD+   T +IR            ++ E ++      DV+ Y  +I G CK G
Sbjct: 127 NMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAG 186

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
            +     +   M    +  D   Y  ++  L   GK+ +A ++L  ++      D+  Y 
Sbjct: 187 EINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYT 243

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
            +I   CR      A KL +        PD  T N L+    + GR+D   K L  M   
Sbjct: 244 ILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSS 303

Query: 373 KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKA 431
                          +    R M A  +  ++  KG+S SV  +NIL+  L   G + +A
Sbjct: 304 GCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRA 363

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
           + +  KM     + NSLS++  +    +   +  A E   +++     P +  YN +   
Sbjct: 364 IDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTA 423

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
           LCK G+++ A+ ++   L +    P    Y   I  + ++G+  K I++L+EM  +   P
Sbjct: 424 LCKDGKVEDAVEILNQ-LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKP 482

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLS 611
           + +  S+++ G+ + G ++EA K F      ++    N + ++ I++   K +  D  + 
Sbjct: 483 DTITYSSLVGGLSREGKVDEAIKFFHEF--ERMGIRPNAVTFNSIMLGLCKSRQTDRAID 540

Query: 612 GLKFFGLESKLKAKGCK 628
            L F      +  +GCK
Sbjct: 541 FLVF------MINRGCK 551


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 203/441 (46%), Gaps = 30/441 (6%)

Query: 179 DSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           +  GR+    E +++M ++   P V  +T +I  L    N+D   + +  MK      +V
Sbjct: 298 NRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNV 357

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + Y TL+ GL K GR+    E+F EMKEN    D   Y  LI+GL   G+   AC L K+
Sbjct: 358 VTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKE 417

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           + D G   +L  YN +I  L +  +  +A++LF    +    PD  T N L+    + G+
Sbjct: 418 MKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQ 477

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE-----ERIMMALDVFEELKGKGYSSVP 413
           MD    ++ +M          +EK  E ++ ++     E  +   D   E    G+ S+ 
Sbjct: 478 MDKVLAIIKEM----------VEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLG 527

Query: 414 --IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
              YN LM A +  G V +A+ L   M+        ++++  +    ++G + EA     
Sbjct: 528 EITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLR 587

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTIL 526
           ++ +    PSV  Y+ L     K  + + ++     M+ + C+ +V++      Y+L I 
Sbjct: 588 EMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVST------YSLVIN 641

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
            +C+S + ++ ++V   M +EG  P       ++S + K   ++ A ++F  L+E  L+ 
Sbjct: 642 CLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLV- 700

Query: 587 EANTIVYDEILIEHMKKKTAD 607
             +T VY+ ++   +K    D
Sbjct: 701 -PDTFVYNIMVNGLVKSNRVD 720



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/535 (20%), Positives = 227/535 (42%), Gaps = 53/535 (9%)

Query: 102 QWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAY 160
           +W  ++  +L +L+ ++ P LV +V+  + +  LA  FF WAG+Q GY H   +Y  +  
Sbjct: 131 KWDAEMGKQLERLKFKLNPGLVCDVVVNQKDLHLAKCFFTWAGQQDGYSHTVGTYTLMIK 190

Query: 161 CLSRNNLFRAADQVPELMDSQGR-------------------IAEMLEILEKMRRNLCKP 201
            L+      A  Q+   M  +G                    ++  LEI  +M+   C P
Sbjct: 191 RLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNP 250

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
               Y  ++ +L       + + V+ ++ +  ++ D   +   +    + GR+    E  
Sbjct: 251 STNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPI 310

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           +EM ++GI      + VLI+ LV  G + +AC     + +     ++  Y +++ GL + 
Sbjct: 311 QEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKA 370

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            + ++A ++F    +++ +PD    N L+    + G  D    L  +M+           
Sbjct: 371 GRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTY 430

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLF----- 435
                ++GK  R   A  +F +LK +G    V  YN L+  L + G++ K L +      
Sbjct: 431 NIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVE 490

Query: 436 ----------------GKMRGLNLEV----------NSLSFSIAIQCHVESGDILEACEC 469
                           G + G +  V            ++++  +   + +G + EA + 
Sbjct: 491 KGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKL 550

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
              + +   +P+V  Y  L  GL K G +D A+ L+R+ +      P+   Y+  +    
Sbjct: 551 LEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLRE-MEKQGCEPSVVTYSSLMASFY 609

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           +  + E+ + + +EM ++GC  +    S +I+ +CK   +++A  VF  ++E  +
Sbjct: 610 KRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGM 664



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/444 (25%), Positives = 200/444 (45%), Gaps = 21/444 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G + E +++LE M+++ C P V  YT ++  L     LD  + +  EM+K   E  V+ 
Sbjct: 541 NGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVT 600

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +L+    K  +      LF EM   G + D + Y ++I  L     V +A D+   + 
Sbjct: 601 YSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMK 660

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G    LG Y +++  L + ++ D A ++F    +  L PD    N ++    +  R+D
Sbjct: 661 EEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVD 720

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNI 417
              KL+  M+    ++  DL  +   L  +GK  R+  A ++F ++  +G+   V  Y  
Sbjct: 721 EACKLVDSMKNQ--NILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTS 778

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           LM  L + G++  AL +F  M       + +++S  I    + G + EA       I   
Sbjct: 779 LMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKG 838

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLV-----RDCLGNVASGPTEFKYALTILHVCRSG 532
             P+V  Y+ L     K G +D A+ L      R C  N+ +      Y   +  + ++G
Sbjct: 839 CTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVT------YNNLLSGLAKAG 892

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
                 ++L EM + GC P+ V  + +I G+ K G ++EA   F  ++E+ ++ +  T  
Sbjct: 893 RLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFT 952

Query: 593 YDEILIEHMKKKTADLVLSGLKFF 616
               LIE + K   D +L   + F
Sbjct: 953 S---LIESLGK--VDKLLEACELF 971



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 181/401 (45%), Gaps = 2/401 (0%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E + +L +M +  C+P V  Y++++         +  L +++EM +    ADV  Y
Sbjct: 577 GRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTY 636

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I  LCK   V +  ++F  MKE G+      Y  L+  LV + K+  A  +  +L +
Sbjct: 637 SLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQE 696

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           S    D  +YN ++ GL +  + D+A KL +     ++ PD  T   LL    + GR++ 
Sbjct: 697 SSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEE 756

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL-KGKGYSSVPIYNILMG 420
            F +  +M +               ++GK  ++  AL +F  + K +    V  Y+ L+ 
Sbjct: 757 AFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLID 816

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           +L + G V++A Y F          N   +S  I    + G +  A E   ++      P
Sbjct: 817 SLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPP 876

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           ++  YN L  GL K G ++ A  L+ + +  V   P    Y + I  V + G  ++    
Sbjct: 877 NIVTYNNLLSGLAKAGRLNVAEKLLEE-MEKVGCVPDLVTYNILIDGVGKMGMVDEAESY 935

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              M ++G  P+ +  +++I  + K   L EA ++F ++ E
Sbjct: 936 FKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEE 976



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 153/325 (47%), Gaps = 34/325 (10%)

Query: 183  RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
            R+ E  ++++ M+     PD+F YT+++  L     L+    ++ +M ++  E DV+AY 
Sbjct: 718  RVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYT 777

Query: 243  TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            +L+  L KGG++     +FR M +   + D   Y  LI+ L  EG+V +A    ++ +  
Sbjct: 778  SLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISK 837

Query: 303  GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
            G   ++G+Y+S+I    +    D+A +LFE   +    P+  T N LL   A+ GR++  
Sbjct: 838  GCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVA 897

Query: 363  FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422
             KLL +MEK+      DL                                  YNIL+  +
Sbjct: 898  EKLLEEMEKV--GCVPDL--------------------------------VTYNILIDGV 923

Query: 423  LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
             ++G V +A   F +M+   +  + ++F+  I+   +   +LEACE  + + E    PSV
Sbjct: 924  GKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSV 983

Query: 483  AAYNCLTKGLCKIGEIDAAMMLVRD 507
              YN L   L + G++  A M+  +
Sbjct: 984  VTYNVLIDILGRAGKVHEAAMIFHE 1008



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 186/406 (45%), Gaps = 39/406 (9%)

Query: 186  EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
            E L + ++M R  C  DV  Y+ +I  L    ++D  L V+  MK++ +E  +  Y TL+
Sbjct: 616  ESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLL 675

Query: 246  MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              L K  ++    ++F E++E+ ++ D  +Y +++ GLV   +V +AC L+  + +    
Sbjct: 676  SSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNIL 735

Query: 306  ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
             DL  Y S++ GL +  + ++A+ +F    ++   PD      L+    + G++ +   +
Sbjct: 736  PDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALII 795

Query: 366  LAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGAL 422
               M K +     D+  +   +  +GKE R+  A   FE    KG + +V +Y+ L+ + 
Sbjct: 796  FRAMAKKR--CVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSF 853

Query: 423  LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
             + G V +AL LF +M+      N ++++  +    ++G +  A +   ++ ++  VP +
Sbjct: 854  GKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDL 913

Query: 483  AAYNCLTKGLCKIGEIDAAMMLVR------------------DCLGNV------------ 512
              YN L  G+ K+G +D A    +                  + LG V            
Sbjct: 914  VTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDS 973

Query: 513  ----ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
                   P+   Y + I  + R+G+  +   + +EM  +GC P+ +
Sbjct: 974  MEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGI 1019



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 36/271 (13%)

Query: 170  AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
            A   + +++   G+++  L I   M +  C PDV  Y+++I  L  E  ++     +E  
Sbjct: 775  AYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENS 834

Query: 230  KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
                   +V  Y +LI    K G V R  ELF EM+      +   Y  L+ GL   G++
Sbjct: 835  ISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRL 894

Query: 290  GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
              A  LL+++   G   DL  YN +I G+ ++   D+A   F+   +  + PD  T   L
Sbjct: 895  NVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSL 954

Query: 350  LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY 409
            +                   E L                GK ++++ A ++F+ ++ +GY
Sbjct: 955  I-------------------ESL----------------GKVDKLLEACELFDSMEEEGY 979

Query: 410  S-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
            + SV  YN+L+  L   G+V +A  +F +M+
Sbjct: 980  NPSVVTYNVLIDILGRAGKVHEAAMIFHEMK 1010



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 112/256 (43%), Gaps = 2/256 (0%)

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM 395
           QD  +    T   ++   A     D   ++L  M K    ++  L        G    + 
Sbjct: 175 QDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVS 234

Query: 396 MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
            AL++F ++K  G + S  +YN ++  L++ G    A+ +FGK+    ++ ++ +F I +
Sbjct: 235 GALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFV 294

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
                SG +  A E   ++I+    P V  +  L   L K G ID A     + + N+  
Sbjct: 295 HSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFF-NGMKNLRC 353

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P    Y   +  + ++G  E+  EV  EM +  C P+ +  + +I G+ K G  + A  
Sbjct: 354 SPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACG 413

Query: 575 VFTNLRERKLLTEANT 590
           +F  +++R L+    T
Sbjct: 414 LFKEMKDRGLVPNLRT 429


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 196/414 (47%), Gaps = 10/414 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G   + +++L++M    C P+V  YT +I  L  E  ++    V+ +M K  +   ++ +
Sbjct: 248 GMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITF 307

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G CK G VV   +L   M++     +   Y  L+EGL    K  KA  LL+ +VD
Sbjct: 308 NALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVD 367

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G   D   YN ++ G C+  Q + A+ +F       L PD  T   L+    ++GR++ 
Sbjct: 368 NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQ 427

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV---FEEL-KGKGYSSVPIYNI 417
              +L  M K   S+    E  F  L+    +I  A DV   FE + + +  ++   +N 
Sbjct: 428 ANGILGSMVKKGISLD---EVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNC 484

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
            + AL +  ++ +A  + GKM    L  + ++ +I I+ H  +G+   + +   ++ +  
Sbjct: 485 FLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAG 544

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P+V  Y  +  GLC  G ++ A  ++   + +    P  F YA+ +    ++G  ++ 
Sbjct: 545 CSPNVYTYTIIINGLCNNGRVEEAETILFS-MSSFGVSPNHFTYAVLVKAHVKAGRLDRA 603

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT--NLRERKLLTEAN 589
            ++++ M + GC PN  I SA++SG     T   AR + +  +L  R L +E N
Sbjct: 604 FQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEEN 657



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/448 (23%), Positives = 192/448 (42%), Gaps = 45/448 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E  ++ ++M    C+P    YT +I+        D  +++ +EM       +V  Y
Sbjct: 213 GRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTY 272

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI  LC+ G++   + +FR+M ++G+      +  LI G   EG V  A  LL  +  
Sbjct: 273 TILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEK 332

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              + ++  YN ++ GLCRV +  KA+ L    V + L PD  T N L+         D 
Sbjct: 333 GNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILV---------DG 383

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
           F                           KE ++ MA ++F  +   G       +  L+ 
Sbjct: 384 FC--------------------------KEGQLNMAFNIFNSMNSAGLEPDGFTFTALID 417

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L ++G +++A  + G M    + ++ ++F+  I  H + G   + C     ++E   + 
Sbjct: 418 GLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLT 477

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +   +NC    L K  +++ A  ++   +      P+   + + I   CR+GE    +++
Sbjct: 478 TAHTFNCFLDALGKDYKLNEANAMLGKMM-KYGLVPSVVTHTILIEGHCRAGETALSLKM 536

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           L  M Q GC PN    + II+G+C +G +EEA  +  ++    +    N   Y  ++  H
Sbjct: 537 LERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGV--SPNHFTYAVLVKAH 594

Query: 601 MKKKTADLVLSGLKFFGLESKLKAKGCK 628
           +K    D      + F + S +   GC+
Sbjct: 595 VKAGRLD------RAFQIVSTMVKNGCQ 616



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 110/511 (21%), Positives = 214/511 (41%), Gaps = 10/511 (1%)

Query: 117 VTPDLVAEVLKVE-NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQ-- 173
           +TP L  +++ ++ NN  L  +FF W  +Q  Y ++      L   L   +LF  A +  
Sbjct: 1   MTPHLAGKIIGLQSNNVELGVRFFKWVCRQSSYCYDLDGRIQLLGVLVSRDLFGVAQKAV 60

Query: 174 ---VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK 230
              + E  DS+  + +++  L+ M     +     Y+ ++  LA          V+  M 
Sbjct: 61  VLLIQECEDSENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMV 120

Query: 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
            +      + Y T++  LCK G V        ++   G  +D  +   L+        +G
Sbjct: 121 NEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLG 180

Query: 291 KACDLLKDLV-DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
           +A  + + +  +   R +   Y+ +I GLC   + ++A++L +  V+    P   T   L
Sbjct: 181 EAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 240

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY 409
           +    ++G  D   K+L +M                  + +E +I  A  VF ++   G 
Sbjct: 241 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 300

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
              +  +N L+    + G V  A  L   M   N + N  +++  ++         +A  
Sbjct: 301 CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL 360

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
              ++++   +P    YN L  G CK G+++ A  +    + +    P  F +   I  +
Sbjct: 361 LLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNS-MNSAGLEPDGFTFTALIDGL 419

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C+ G  E+   +L  M ++G   +EV  +A+I G CK G  ++   +F N+ E + LT A
Sbjct: 420 CKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTA 479

Query: 589 NTI-VYDEILIEHMKKKTADLVLSGLKFFGL 618
           +T   + + L +  K   A+ +L  +  +GL
Sbjct: 480 HTFNCFLDALGKDYKLNEANAMLGKMMKYGL 510



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/453 (19%), Positives = 194/453 (42%), Gaps = 60/453 (13%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+I E   +  KM ++   P +  + A+I     E  + +  ++   M+K   + ++  
Sbjct: 282 EGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRT 341

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ GLC+  +  +   L R + +NG+L DR  Y +L++G   EG++  A ++   + 
Sbjct: 342 YNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMN 401

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +G   D   + ++I GLC++ + ++A  +    V+  ++ D  T   L+    ++G+  
Sbjct: 402 SAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAK 461

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI-------------------------- 394
           +   L   M + +    A     F   +GK+ ++                          
Sbjct: 462 DVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILI 521

Query: 395 ---------MMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                     ++L + E +K  G S +V  Y I++  L   G V++A  +   M    + 
Sbjct: 522 EGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVS 581

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG------------L 492
            N  ++++ ++ HV++G +  A +  + +++    P+   Y+ L  G            L
Sbjct: 582 PNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARAL 641

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
              G++DA  +   +   N  S            HV R  + +  +++ +E+ + G P  
Sbjct: 642 SSTGDLDARSLSSEENDNNCLSS-----------HVFRLMDVDHALKIRDEIKKCGVPTE 690

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
           ++  + ++ G+CK G + EA ++  ++ +  L 
Sbjct: 691 DLY-NFLVVGLCKEGRIIEADQLTQDMVKHGLF 722



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 96/445 (21%), Positives = 175/445 (39%), Gaps = 44/445 (9%)

Query: 176 ELMDSQGRIAEMLEILEKMRR---NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
           ELM+   R+++  +    +RR   N   PD   Y  ++     E  L+    ++  M   
Sbjct: 344 ELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSA 403

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            +E D   +  LI GLCK GR+ + + +   M + GI +D   +  LI+G    GK    
Sbjct: 404 GLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDV 463

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
           C L +++V++        +N  +  L +  + ++A  +    ++  L P   T   L+  
Sbjct: 464 CFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEG 523

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-S 411
               G      K+L +M++   S            +    R+  A  +   +   G S +
Sbjct: 524 HCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPN 583

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS------------IAIQCHVE 459
              Y +L+ A ++ G + +A  +   M     + NS  +S            I  +    
Sbjct: 584 HFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSS 643

Query: 460 SGDI----LEACECHNKI--------------------IEMSQVPSVAAYNCLTKGLCKI 495
           +GD+    L + E  N                      I+   VP+   YN L  GLCK 
Sbjct: 644 TGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKE 703

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTIL-HVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
           G I  A  L +D    V  G    K   +I+ H C++ + +  +E +  +      P+  
Sbjct: 704 GRIIEADQLTQD---MVKHGLFPDKAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFA 760

Query: 555 ICSAIISGMCKHGTLEEARKVFTNL 579
               +I G+   G ++EA+K+ ++L
Sbjct: 761 SYCWVIHGLRNEGRVQEAQKLVSDL 785


>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
 gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
          Length = 859

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/451 (23%), Positives = 206/451 (45%), Gaps = 50/451 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+   +E+LEKM +   +P+V  Y  ++       + +   RV   M +  V  +V+  
Sbjct: 240 GRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGVERVLRLMSERGVSRNVVTC 299

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGIL-IDRAIYGVLIEG------------------ 282
             L+ G CK G++    +L RE++E+ +L +D  +YGVL++G                  
Sbjct: 300 TMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGVLVDGYCQMGRMEDAVRIRDEML 359

Query: 283 --------------LVGEGKVGKACD---LLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
                         + G  K+G+ C+   +   +VD   + D   YN+++ G CR  +  
Sbjct: 360 RVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVS 419

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL-----KFSVAADL 380
           KA+ L E  + D + P   T N ++    ++G  D+   L   M +      + S    L
Sbjct: 420 KAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPNEISCCTML 479

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
           + FF+  +G  +R MM   +++E+ G+G++ S   +N ++  L ++G++ +A  +F +M+
Sbjct: 480 DCFFK--MGDSDRAMM---LWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMK 534

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI- 498
            L L  + +++      + ++G++ EA +    +   +   S+  YN L  GL KI ++ 
Sbjct: 535 ELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLN 594

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D   +LV   +      P    Y   I   C   + +K   +  EM + G  PN V+CS 
Sbjct: 595 DVTDLLVE--MQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSK 652

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           I+S + +   + EA  +   + +  +L   N
Sbjct: 653 IVSSLYRDDRISEATVILDKMLDFDILAVHN 683



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 108/451 (23%), Positives = 200/451 (44%), Gaps = 49/451 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E   +   M     KPD ++Y  ++     E  +     + EEM  D +   V+ Y
Sbjct: 381 GQVCEAERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTY 440

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T+I GL   G       L+  M E G+  +      +++     G   +A  L K+++ 
Sbjct: 441 NTVIKGLVDVGSYDDALHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILG 500

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G+      +N++I GLC++ +  +A  +F+   +  L+PD  T   L     + G +  
Sbjct: 501 RGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQE 560

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
            F++   ME+   S  A +E +   + G  K  ++    D+  E++ +G S +V  Y  L
Sbjct: 561 AFQIKGVMERQAMS--ASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTL 618

Query: 419 MGALLEIGEVKKALYLFGKM--RGLNLEV-------------NSLSFSIAIQCHVESGDI 463
           +    +  ++ KA +L+ +M  RG    V             + +S +  I   +   DI
Sbjct: 619 ISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRISEATVILDKMLDFDI 678

Query: 464 LEA-CECHNKIIE-------------------MSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
           L    +C +K+++                    + + +   YN    GLCK G++D A  
Sbjct: 679 LAVHNKCSDKLVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSGKLDEA-- 736

Query: 504 LVRDCLGNVASG---PTEFKYALTILHVCR-SGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
             R  L  + S    P  F Y  T++H C  SG  ++  ++ +EM ++G  PN  I +A+
Sbjct: 737 --RSVLSVLMSRGFLPDNFTYC-TLIHACSVSGNVDEAFKLRDEMLEKGLIPNITIYNAL 793

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           I+G+CK G ++ A+++F  L ++ L+  A T
Sbjct: 794 INGLCKLGNIDRAQRLFYKLYQKGLVPNAVT 824



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/405 (22%), Positives = 166/405 (40%), Gaps = 41/405 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G   + L +   M      P+  +   M+       + D  + +W+E+         +A+
Sbjct: 451 GSYDDALHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAF 510

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T+I GLCK G+++    +F  MKE G+  D   Y  L +G    G V +A  +   +  
Sbjct: 511 NTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMER 570

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
               A + +YNS+I GL ++++ +    L        L+P+  T   L+    +  ++D 
Sbjct: 571 QAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDK 630

Query: 362 FFKLLAQMEKLKFS---------------------VAADLEKFFEF-------------- 386
            F L  +M +  F+                         L+K  +F              
Sbjct: 631 AFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRISEATVILDKMLDFDILAVHNKCSDKLV 690

Query: 387 ---LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
              L  + ++I  +LD  +       S+  +YNI +  L + G++ +A  +   +     
Sbjct: 691 KNDLTLEAQKIADSLDKSDIC--NSLSNNIVYNIAIDGLCKSGKLDEARSVLSVLMSRGF 748

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             ++ ++   I     SG++ EA +  ++++E   +P++  YN L  GLCK+G ID A  
Sbjct: 749 LPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGLIPNITIYNALINGLCKLGNIDRAQR 808

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
           L    L      P    Y + I   CR G+ +K   +  +MT+EG
Sbjct: 809 LFYK-LYQKGLVPNAVTYNILIGCYCRIGDLDKASRLREKMTEEG 852



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 107/479 (22%), Positives = 207/479 (43%), Gaps = 45/479 (9%)

Query: 131 NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV-PELMDSQGRIAEMLE 189
           +P+    FFH A +   Y+ +  SY+ L + L+   LF  A  V  +LMD          
Sbjct: 80  HPSACLSFFHLATQNSHYRPHSLSYSILLHILTHARLFPEATTVLRQLMDLH-------- 131

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA----------DVM 239
                    C  +  AY     V +  +    C  V++ + K   E           D M
Sbjct: 132 ---------CTNNYRAYAVCNHVFSVYKEFGFCSGVFDMLMKAFAERGMTKHALYVFDEM 182

Query: 240 AYVTLIMGL--CKG--GRVVRGHE------LFREMKENGILIDRAIYGVLIEGLVGEGKV 289
           + +  + GL  C    G++V+  E      +F ++   GI+ D  +  +++      G+V
Sbjct: 183 SRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFDQIVGTGIVPDVYMCSIVVNAHCQVGRV 242

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
             A ++L+ +V  G   ++  YN ++ G      F+   ++  +  +  ++ +  T   L
Sbjct: 243 DVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGVERVLRLMSERGVSRNVVTCTML 302

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKG 406
           +    + G+MD   KLL ++E+ +  V    E+ +  LV    +  R+  A+ + +E+  
Sbjct: 303 MRGYCKKGKMDEAEKLLREVEEDELLVVD--ERVYGVLVDGYCQMGRMEDAVRIRDEMLR 360

Query: 407 KGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G   ++ I N L+    ++G+V +A  +F  M   NL+ +  S++  +  +   G + +
Sbjct: 361 VGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVSK 420

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A     +++     P+V  YN + KGL  +G  D A+ L    +      P E      +
Sbjct: 421 AFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWH-LMVERGVTPNEISCCTML 479

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
               + G++++ + +  E+   G   + V  + +ISG+CK G L EA  VF  ++E  L
Sbjct: 480 DCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGL 538


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 195/408 (47%), Gaps = 25/408 (6%)

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           M+K     + + Y  L+ GLC GGR+     L+  M + G   D   Y  L+ G    G+
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           + +A  +    V  G+  D+  YN++I G C+  + D+A ++ +  V ++L PD  T N 
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEER-IMMALDVFEELK 405
           L+    + GR+D      A+M  +    + ++  +   + G  +E R +  AL +F  + 
Sbjct: 121 LVNGLCKNGRVDE-----ARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVL 175

Query: 406 GKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
            +GY   VP YNIL+  LL+   V +A  LF  +    LE +++++++ I    ++G + 
Sbjct: 176 KQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVE 235

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYA 522
           +A      + E   VP V ++N +  GLCK   +D A +L+    G  A G  P    + 
Sbjct: 236 DALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLS---GMEAKGCSPNAISFN 292

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK---HGTLEEARKVFTNL 579
             I   CR+G+ +K +    EM + G  P  V  + ++ G+CK    G ++EA  +F  +
Sbjct: 293 TLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAM 352

Query: 580 RERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
            E+  + +   +V    LI+ + K  A  +    +  G    ++AKGC
Sbjct: 353 IEKGRVPD---VVTYSALIDGLGK--AGKLDDARRLLG---AMEAKGC 392



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 116/461 (25%), Positives = 209/461 (45%), Gaps = 31/461 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G+  N  +YNAL   L                   GR+++   + E+M +    PDV
Sbjct: 2   RKHGFWPNRITYNALLSGLCNG----------------GRMSDAQALYERMIKAGYSPDV 45

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  ++        LD  L++++   K     DV+ Y  LI G CK  ++     + + 
Sbjct: 46  VTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQR 105

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR-VK 322
           M    ++ D   Y  L+ GL   G+V +A  L   +VD G+  ++  Y+++I GLCR ++
Sbjct: 106 MVSENLVPDVVTYNSLVNGLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRELR 162

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
              +A KLF   ++    P+  T N L+    +  R++  F+L + +  +K  +  D   
Sbjct: 163 GVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGL--VKHGLEPDAIT 220

Query: 383 FFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
           +  F+ G  K  R+  AL + +++  KG    V  +N ++  L +   V +A  L   M 
Sbjct: 221 YTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGME 280

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI---G 496
                 N++SF+  I     +G   +A     ++++    P+V  YN L  GLCK    G
Sbjct: 281 AKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEG 340

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            I  A+ L  D +      P    Y+  I  + ++G+ +    +L  M  +GC PN    
Sbjct: 341 RIKEAITLF-DAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTY 399

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +++ISG+C    ++EA ++F  + E+  + +  TI Y  I+
Sbjct: 400 NSLISGLCGLEKVDEALELFVAMVEKGCVPD--TITYGTII 438



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 193/429 (44%), Gaps = 39/429 (9%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           + GY  +  +YN L +   +                 G + E L+I +   +    PDV 
Sbjct: 38  KAGYSPDVVTYNTLLHGFCK----------------VGELDEALKIFDGAVKRGFVPDVV 81

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y A+I        LD   R+ + M  + +  DV+ Y +L+ GLCK GRV     L   +
Sbjct: 82  TYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARML---I 138

Query: 265 KENGILIDRAIYGVLIEGLVGEGK-VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
            + G   +   Y  LI GL  E + V +A  L   ++  GY  ++  YN +I GL +  +
Sbjct: 139 VDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDR 198

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            ++A++LF   V+  L PD  T    +    + GR+++   +L  M++       D+   
Sbjct: 199 VNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEK--GCVPDVVSH 256

Query: 384 FEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKM-- 438
              + G  KE+R+  A  +   ++ KG S   I +N L+      G+ KKA+  F +M  
Sbjct: 257 NAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLK 316

Query: 439 RGLNLEVNSLSFSIAIQCHV-ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           RG+   V + +  +   C   + G I EA    + +IE  +VP V  Y+ L  GL K G+
Sbjct: 317 RGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGK 376

Query: 498 IDAAMMLV-----RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           +D A  L+     + C+ NV      + Y   I  +C   + ++ +E+   M ++GC P+
Sbjct: 377 LDDARRLLGAMEAKGCIPNV------YTYNSLISGLCGLEKVDEALELFVAMVEKGCVPD 430

Query: 553 EVICSAIIS 561
            +    IIS
Sbjct: 431 TITYGTIIS 439


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/518 (22%), Positives = 215/518 (41%), Gaps = 67/518 (12%)

Query: 79  FQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKF 138
           F+++     IARF        Q Q G +   +    R++TP +  EV+K  NNP +  KF
Sbjct: 10  FRVRASTIAIARF------HGQTQGGSRFYPD----RQLTPLIAFEVIKRFNNPKVGFKF 59

Query: 139 FHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAE------------ 186
             ++       H +++YN L   L +       + V + M S G + +            
Sbjct: 60  LEFSRLNLNVNHCYSTYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMA 119

Query: 187 -------MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
                  + ++L +++    + + F Y  ++ VL  +  +   + +++E        D  
Sbjct: 120 QASDFDMVKKLLAEVQGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTW 179

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            +  LI GLC+ G V R  E+F++M+  G L D   Y  LI GL    +V + C+L K++
Sbjct: 180 TFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEI 239

Query: 300 VD-SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
              S    D+  Y SII G C+  +  +A  LFE  ++  + P+  T N L+      G+
Sbjct: 240 QSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLI---DGFGK 296

Query: 359 MDNFFKLLAQMEKLK-FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNI 417
           + N  +  A   K+  F  +AD+  F   +                    GY        
Sbjct: 297 IGNIAEAEAMYRKMAYFDCSADVVTFTSLI-------------------DGYCRA----- 332

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
                   G+V   L  +  M+  N+     ++++ I    +   + EA +   +I   S
Sbjct: 333 --------GQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSS 384

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
            +P    YN +  G CK G +D   +++++ +      P +  + + I+  C  G   + 
Sbjct: 385 IIPKPFMYNPVIDGFCKAGNVDEGNVILKE-MEEKRCDPDKVTFTILIIGHCVKGRMFEA 443

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           I + N M    C P+ +  +++IS + K G   EA ++
Sbjct: 444 INIFNRMLATRCAPDNITVNSLISCLLKAGMPNEAYRI 481



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 160/368 (43%), Gaps = 9/368 (2%)

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  L+  LC+ G     + +F  M  +G L D  + G L+  +           LL ++
Sbjct: 75  TYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEV 134

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
                R +  +YN+++  L +  Q  +A  LF+  +     PD  T N L+     +G +
Sbjct: 135 QGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGV 194

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI--Y 415
           D  F++   ME   F    D+  +   + G  K   +    ++F+E++ +   S  I  Y
Sbjct: 195 DRAFEVFKDMES--FGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTY 252

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             ++    + G++K+A  LF +M    ++ N ++F++ I    + G+I EA   + K+  
Sbjct: 253 TSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAY 312

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
                 V  +  L  G C+ G+++  +    + +      PT + YA+ I  +C+     
Sbjct: 313 FDCSADVVTFTSLIDGYCRAGQVNHGLKF-WNVMKTRNVSPTVYTYAVLINALCKENRLN 371

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           +  + L ++      P   + + +I G CK G ++E   +   + E++   + + + +  
Sbjct: 372 EARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKR--CDPDKVTFTI 429

Query: 596 ILIEHMKK 603
           ++I H  K
Sbjct: 430 LIIGHCVK 437



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 136/344 (39%), Gaps = 37/344 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK-KDLVEADVMA 240
           G +    E+ + M    C PDV  Y  +I  L     +     +++E++ +     D++ 
Sbjct: 192 GGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVT 251

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y ++I G CK G++     LF EM  +GI  +   + VLI+G    G + +A  + + + 
Sbjct: 252 YTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMA 311

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                AD+  + S+I G CR  Q +   K + V    +++P   T   L+          
Sbjct: 312 YFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINA-------- 363

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYNILM 419
                                      + KE R+  A D   ++K       P +YN ++
Sbjct: 364 ---------------------------LCKENRLNEARDFLGQIKNSSIIPKPFMYNPVI 396

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               + G V +   +  +M     + + ++F+I I  H   G + EA    N+++     
Sbjct: 397 DGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCA 456

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
           P     N L   L K G  + A  + +  L +   G + F+ A+
Sbjct: 457 PDNITVNSLISCLLKAGMPNEAYRIRKMALEDRNLGLSSFEKAI 500



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 128/311 (41%), Gaps = 45/311 (14%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           YN ++  LC++   D    +F+    D   PD   +  L+   A+    D   KLLA+++
Sbjct: 76  YNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQ 135

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKK 430
                             GKE RI                +  +YN L+  L++  +V +
Sbjct: 136 ------------------GKEVRI----------------NSFVYNNLLSVLVKQNQVHE 161

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A+YLF +   +    ++ +F+I I+     G +  A E    +     +P V  YN L  
Sbjct: 162 AIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLIN 221

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           GLCK  E+     L ++        P    Y   I   C+SG+ ++   +  EM + G  
Sbjct: 222 GLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQ 281

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL---TEANTIVYDEILIEHMKKKTAD 607
           PN +  + +I G  K G + EA  ++     RK+      A+ + +  ++  + +   A 
Sbjct: 282 PNVITFNVLIDGFGKIGNIAEAEAMY-----RKMAYFDCSADVVTFTSLIDGYCR---AG 333

Query: 608 LVLSGLKFFGL 618
            V  GLKF+ +
Sbjct: 334 QVNHGLKFWNV 344


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 124/482 (25%), Positives = 210/482 (43%), Gaps = 24/482 (4%)

Query: 103 WGPQVVTELSKL-RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           W P     L  L R + P LV  VL+ + +  +A  FF+WA +Q  Y H+   Y  +   
Sbjct: 150 WNPNFEGRLRHLLRSLKPPLVCAVLRSQADERVALNFFYWADRQWRYSHHPVVYYTMLDV 209

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221
           LS+  L + A +V  LM  +G        +E      C P+ F Y  +    A +  L  
Sbjct: 210 LSKTKLCQGARRVLRLMTRRG--------IE------CPPEAFGYVMVSYSRAGK--LRN 253

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
            LRV   M+K  VE  +    T I  L KGG++ +  +    M+  GI  D   Y  LI+
Sbjct: 254 ALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYNSLIK 313

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD-DLA 340
           G     ++  A +L+  L   G   D   Y +++G LC+ K+ ++   L E  V + +L 
Sbjct: 314 GYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLI 373

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400
           PD  T N L+   ++ G  D+    L + +   F +             ++ R+  A  +
Sbjct: 374 PDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSL 433

Query: 401 FEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
             ++  +G +  V  Y  ++     +G + +A  +  +M     + N++S++  +     
Sbjct: 434 VIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCH 493

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PT 517
           SG  LEA E  N   E    P+   Y  +  GL + G++  A  L R+    V  G  PT
Sbjct: 494 SGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREM---VEKGFFPT 550

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
             +  L I  +C++ +  +  + L E   +GC  N V  + +I G C+ G +E A  V  
Sbjct: 551 PVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLD 610

Query: 578 NL 579
           ++
Sbjct: 611 DM 612



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 91/426 (21%), Positives = 171/426 (40%), Gaps = 43/426 (10%)

Query: 181 QGRIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           + +I E+  ++EKM  N    PD   Y  +I +L+   + D  L   +E +      D +
Sbjct: 353 EKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKV 412

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  ++   C+ GR+     L  +M   G   D   Y  +++G    G++ +A  +L+ +
Sbjct: 413 GYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQM 472

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G + +   Y +++ GLC   +  +A ++  V+ +    P+  T              
Sbjct: 473 YKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYG------------ 520

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNIL 418
                  A M  L+                +E ++  A D+  E+  KG+   P+  N+L
Sbjct: 521 -------AVMHGLR----------------REGKLSEACDLTREMVEKGFFPTPVEINLL 557

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + +L +  +V +A     +       +N ++F+  I    + GD+  A    + +    +
Sbjct: 558 IQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGK 617

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P    Y  L   L K G +D A  L+   L      PT   Y   I    + G  + ++
Sbjct: 618 HPDAVTYTALFDALGKKGRLDEAAELIVKMLSK-GLDPTPVTYRSVIHRYSQWGRVDDML 676

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
            +L +M +    P   + + +I  +C  G LEEA K+   +       +ANT     +L+
Sbjct: 677 NLLEKMLKR--QPFRTVYNQVIEKLCDFGNLEEAEKLLGKVLRTASKVDANTC---HVLM 731

Query: 599 EHMKKK 604
           E   KK
Sbjct: 732 ESYLKK 737



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/402 (21%), Positives = 163/402 (40%), Gaps = 37/402 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E   ++  M    C PDV  YTA++        +D   ++ ++M K   + + ++
Sbjct: 424 KGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVS 483

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ GLC  G+ +   E+    +E+    +   YG ++ GL  EGK+ +ACDL +++V
Sbjct: 484 YTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMV 543

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G+       N +I  LC+ ++  +A K  E  +    A +      ++    ++G M+
Sbjct: 544 EKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDME 603

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
               +L  M                +L GK                  +     Y  L  
Sbjct: 604 AALSVLDDM----------------YLSGK------------------HPDAVTYTALFD 629

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           AL + G + +A  L  KM    L+   +++   I  + + G + +      K+++  + P
Sbjct: 630 ALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKMLK--RQP 687

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
               YN + + LC  G ++ A  L+   L   +       + L   ++ + G A    +V
Sbjct: 688 FRTVYNQVIEKLCDFGNLEEAEKLLGKVLRTASKVDANTCHVLMESYL-KKGVAISAYKV 746

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
              M +    P+  +C  +   +   G L EA  +     ER
Sbjct: 747 ACRMFRRNLTPDLKLCEKVSKKLVLDGKLVEADNLMLRFVER 788



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 87/187 (46%), Gaps = 1/187 (0%)

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           AL V   ++  G   S+ I N  +  L++ G+++KAL    +M+   ++ + ++++  I+
Sbjct: 254 ALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYNSLIK 313

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
            + +   I +A E    +      P   +Y  +   LCK  +I+    L+   + N    
Sbjct: 314 GYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLI 373

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P +  Y   I  + + G A+  +  L E   +G   ++V  SAI+   C+ G ++EA+ +
Sbjct: 374 PDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSL 433

Query: 576 FTNLRER 582
             ++  R
Sbjct: 434 VIDMYSR 440


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 127/542 (23%), Positives = 231/542 (42%), Gaps = 45/542 (8%)

Query: 79  FQLQRHLSPIARFITDAFRK--NQFQWGPQVVTELSKLRRVTPDLVAEVL-KVENNPTLA 135
           F   RH      F  D+ R+   + +W    +  L     + P   + VL ++  +  LA
Sbjct: 57  FVSNRHFHNFDCFDKDSVREIVREQRWDDFRIVSLFD-SALAPIWASRVLVELCQDARLA 115

Query: 136 SKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKM- 194
            +FF WA  + G++H   +Y  L + L     +  A+ V + +    R+    ++ + + 
Sbjct: 116 LRFFEWAKGRIGFQHTSEAYCILVHILFCARFYSDANAVLKELICLRRVLPSWDVFDLLW 175

Query: 195 -RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
             RN+C P    + A+   L     L+     + +M+K  V     +   L+  L K GR
Sbjct: 176 ATRNVCVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGR 235

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
                + F++M   GI      Y ++I+ L  EG +  A  L   + ++G+  D+  YNS
Sbjct: 236 GDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNS 295

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           +I G  ++   D+   +FE     D  PD  T N L+ C  +  RM              
Sbjct: 296 LIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERM-------------- 341

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
                   K FEFL               E+K  G   +V  Y+  + A  + G +++A+
Sbjct: 342 -------PKAFEFL--------------HEMKANGLKPNVVTYSTFIDAFCKEGMLQEAI 380

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
             F  MR + L  N  +++  I  + ++G++ EA +   +I++     +V  Y  L  GL
Sbjct: 381 KFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGL 440

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           C+ G +  A  + R  L N    P +  Y   +    ++ E E   ++L EM ++   P+
Sbjct: 441 CEEGRMKEAEEVFRAML-NAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPD 499

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSG 612
            ++   I+ G+C    LEEA+ +   ++E  + T  N ++Y  ++  + K   A   L+ 
Sbjct: 500 LLLYGTILWGLCNESRLEEAKLLIGEIKESGINT--NAVIYTTLMDAYFKSGQATEALTL 557

Query: 613 LK 614
           L+
Sbjct: 558 LE 559



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 116/509 (22%), Positives = 216/509 (42%), Gaps = 62/509 (12%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177
           T +++ + L  E +  +A   F    K+ G+  +  +YN+L                   
Sbjct: 257 TYNIMIDYLCKEGDLEMARSLFTQM-KEAGFTPDIVTYNSL------------------- 296

Query: 178 MDSQGRIA---EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
           +D  G++    E + I E+M+   C PDV  Y A+I        +        EMK + +
Sbjct: 297 IDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGL 356

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           + +V+ Y T I   CK G +    + F +M+   +  +   Y  LI+     G + +A  
Sbjct: 357 KPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALK 416

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           L+++++ +G + ++  Y +++ GLC   +  +A ++F   +   +AP+  T   L+    
Sbjct: 417 LVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFI 476

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSS- 411
           +   M+    +L +M++    +  DL  +   L G   E R+  A  +  E+K  G ++ 
Sbjct: 477 KAKEMEYAKDILKEMKEK--CIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTN 534

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
             IY  LM A  + G+  +AL L  +M  L L    +++   I    +SG + EA     
Sbjct: 535 AVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFG 594

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL----------------GNVASG 515
           ++ E+   P+VA Y  L  GLCK    + A  L  + L                GN+  G
Sbjct: 595 RMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHG 654

Query: 516 PTE------------------FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
             +                    Y   I  +  SG+ +K   +L+EM  +G  P+EV+  
Sbjct: 655 NLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYM 714

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLT 586
            +I      G ++EA ++   + +R ++T
Sbjct: 715 CLIKKYYALGKVDEALELQNEMAKRGMIT 743


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 131/576 (22%), Positives = 249/576 (43%), Gaps = 47/576 (8%)

Query: 20  KPSQNRPTV-YGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKT 78
           KP +  P + +  L+    S ++ N +S+PH S P ++              S  +DP  
Sbjct: 3   KPHKTLPRMCFHSLYFLLGSHQSSNFSSQPHPSSPLSI--------------SSNTDP-- 46

Query: 79  FQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKL-RRVTPDLVAEVLKVENNPTLASK 137
                 +S I+  ++         W  +  +ELS L  ++ P  V  +L   NN     +
Sbjct: 47  --FPELVSKISIILSSP------TW--ERSSELSHLIPKLKPHHVVNLLDTHNNTESVLR 96

Query: 138 FFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM----DSQGRIAEMLEILEK 193
           FFHW  +   +KH+ + + ++   L R+ LF  AD V  LM     ++G +  ++++L +
Sbjct: 97  FFHWVSRTHFFKHDMSCFVSMLNRLVRDRLFVPADNVRILMIKSCRNEGEVKRVIQVLSE 156

Query: 194 MRRNLCKPDVFAYT----AMIRVLAAERNLDACLR-VWEEMKKDLVEADVMAYVTLIMGL 248
           +         F YT    + + +   + ++D   R V+ EM    +  ++  +  +I  L
Sbjct: 157 INTTY----DFGYTLYSFSTLLIQLGKFDMDGLGRDVYIEMLNSGIRPNLFTFNAMIKIL 212

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C  G+V     +   +   G   D   Y  LI G    G +  A ++   +V  G   + 
Sbjct: 213 CNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNS 272

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             Y+++I GLC   + ++A  + E  +   + P        +V   + GR     KLL +
Sbjct: 273 VTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGK 332

Query: 369 MEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEI 425
           M+K       +++ +   + G  ++ +  +A+ V+ ++   G     + Y+ L+  L   
Sbjct: 333 MKKR--GCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVE 390

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G  + AL +F  M   +   N+ ++++ I+     G I +A    +++++    P+V  Y
Sbjct: 391 GRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITY 450

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           N +     K G ++ AM L+    GN     T + YA  I    R G+ E    + NEM 
Sbjct: 451 NIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDT-WTYANLISGFSRGGKLEHAFSLFNEMV 509

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           + G  PN V  +AII+G      +++A  +F  + E
Sbjct: 510 EHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVE 545



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 193/424 (45%), Gaps = 11/424 (2%)

Query: 164 RNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACL 223
           R NLF   + + +++ ++G++ E   I+  +      PD F YT++I       NLD   
Sbjct: 199 RPNLF-TFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAF 257

Query: 224 RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
            +++ M KD  + + + Y  LI GLC  GR+    ++  EM + GI      Y + I  L
Sbjct: 258 EMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSL 317

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
              G+  +A  LL  +   G   ++  Y ++I GL R  +F+ A  ++   + D L P  
Sbjct: 318 CDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTA 377

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVF 401
            T + L+      GR +    +   M  L      + E +   + G      I  A  +F
Sbjct: 378 VTYSALINQLYVEGRFETALTIFEWM--LSHDSLPNTETYNVIIKGFCSIGYIQKATAIF 435

Query: 402 EELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
           +++   G S +V  YNI++    + G +  A+ L   M+G  L++++ +++  I      
Sbjct: 436 DQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRG 495

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTE 518
           G +  A    N+++E    P+V  YN +  G   + ++D A+ L    +  GNV S  T 
Sbjct: 496 GKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGT- 554

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
             Y + I    ++    +      +M ++G  PN +  ++ I G+CK+G    A K+F  
Sbjct: 555 --YNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHE 612

Query: 579 LRER 582
           +++R
Sbjct: 613 MKKR 616



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 209/448 (46%), Gaps = 31/448 (6%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTA-MIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           S+GR+ E +++LE+M     +P V AYT  ++ +  A R+ +A +++  +MKK     +V
Sbjct: 284 SEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEA-VKLLGKMKKRGCGPNV 342

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
             Y  LI GL + G+      ++ +M  +G++     Y  LI  L  EG+   A  + + 
Sbjct: 343 QTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEW 402

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           ++      +   YN II G C +    KA  +F+  ++   +P+  T N ++    + G 
Sbjct: 403 MLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGY 462

Query: 359 MDNFFKLLAQME----KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVP 413
           M+N  +LL  M+    KL     A+L   F     +  ++  A  +F E+   G S +V 
Sbjct: 463 MNNAMRLLEMMKGNGLKLDTWTYANLISGFS----RGGKLEHAFSLFNEMVEHGISPNVV 518

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN ++   L + +V  AL LF KM       +S ++++ I    ++  I EA     K+
Sbjct: 519 TYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKM 578

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHV 528
           ++   +P+V  Y     GLCK G    A      M  RD   N+ +      Y+  I  +
Sbjct: 579 VKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCT------YSSLIDGL 632

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C+ G+AE    +L+    +GC PN    + ++ G+C  G   EA ++  +++++ L  + 
Sbjct: 633 CQEGQAEDAERLLD----DGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGL--QP 686

Query: 589 NTIVYDEILIEHMKKKTADLVLSGLKFF 616
           +  +Y  +L+   K    +   S LK F
Sbjct: 687 SEEIYRALLVGQCKNLEVE---SALKIF 711



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 110/473 (23%), Positives = 195/473 (41%), Gaps = 38/473 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS-------------------QGRI 184
           K++G   N  +Y AL   LSR+  F  A  V   M +                   +GR 
Sbjct: 334 KKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRF 393

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
              L I E M  +   P+   Y  +I+   +   +     ++++M K     +V+ Y  +
Sbjct: 394 ETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNII 453

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I    K G +     L   MK NG+ +D   Y  LI G    GK+  A  L  ++V+ G 
Sbjct: 454 IHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGI 513

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  YN+II G   V + D A  LF   V+    P   T N ++   ++  R+     
Sbjct: 514 SPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAEN 573

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGA 421
              +M  +K  +  ++  +  F+ G  K  R  +A  +F E+K + Y  ++  Y+ L+  
Sbjct: 574 FCGKM--VKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDG 631

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L + G+ + A  L         E N  +++  ++     G   EA +    + +    PS
Sbjct: 632 LCQEGQAEDAERLLDD----GCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPS 687

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
              Y  L  G CK  E+++A+ +  D +      P    Y   I  +C++   +K   + 
Sbjct: 688 EEIYRALLVGQCKNLEVESALKIF-DSMVTTGFQPCLSDYKALICALCKANFRQKAQCMF 746

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHG----TLE-----EARKVFTNLRERKLL 585
             M ++    +EV+ + ++ G+ K G    +LE     E+R    N + R +L
Sbjct: 747 QTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMESRNCTLNFQTRVML 799



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 86/238 (36%), Gaps = 56/238 (23%)

Query: 133 TLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
           +LA K FH   K++ Y  N  +Y++L   L +      A+    L+D             
Sbjct: 604 SLAFKIFH-EMKKRDYFPNLCTYSSLIDGLCQEG---QAEDAERLLDDG----------- 648

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
                 C+P+V  YT ++R                                   GLC  G
Sbjct: 649 ------CEPNVDTYTTLVR-----------------------------------GLCGKG 667

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
           R     +L   MK+ G+     IY  L+ G     +V  A  +   +V +G++  L  Y 
Sbjct: 668 RCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYK 727

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           ++I  LC+     KA  +F+  ++     D      LL    + G  D   +LL  ME
Sbjct: 728 ALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVME 785


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 194/418 (46%), Gaps = 14/418 (3%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +   M ++   P+V  YT MI  L  E+ +D  + ++EEMK   +  D++ Y +LI GLC
Sbjct: 330 VFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLC 389

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K   + R   L ++MKE GI  D   Y +L++ L   G++  A +  + L+  GY  ++ 
Sbjct: 390 KNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQ 449

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            YN +I GLC+   F +A  L          PD  T   ++    E    D   K+L +M
Sbjct: 450 TYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREM 509

Query: 370 EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVK 429
                 +A  L++  +  + KE +I++A+     +K      V  Y  LM     + E+K
Sbjct: 510 ------IARGLQEARKVRL-KEAKIVLAVMTKACIK----PDVVTYGTLMDGYFLVNELK 558

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
            A Y+F  M  + +  N   ++I I    +   + EA     ++   +  P++  Y  L 
Sbjct: 559 HAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLI 618

Query: 490 KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
             LCK   ++ A+ L+++ +      P  + Y + +  +C+SG  E   E+   +  +G 
Sbjct: 619 DALCKNHHLERAIALLKE-MKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGY 677

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
             N  + +A+I+ +CK G  +EA  +   + ++  + +A  + +D I+    +K   D
Sbjct: 678 HLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDA--VTFDIIIWALFEKDEND 733



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 124/514 (24%), Positives = 217/514 (42%), Gaps = 65/514 (12%)

Query: 146 KGYKHNFASYNALAY--CLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           KG   N  +YNAL Y  C+                   G + E   +L +M+     PDV
Sbjct: 232 KGISPNVVTYNALVYGFCI------------------MGHLKEAFSLLNEMKLKNINPDV 273

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             +  +I  L  E  + A   V   M K  ++ DV+ Y +LI G     +V     +F  
Sbjct: 274 CTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYS 333

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M ++G+  +   Y  +I+GL  E  V +A  L +++       D+  Y S+I GLC+   
Sbjct: 334 MAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHH 393

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN----FFKLLAQMEKLKFSVAAD 379
            ++A  L +   +  + PD  +   LL    + GR++N    F +LL +   L      +
Sbjct: 394 LERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHL------N 447

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFG 436
           ++ +   + G  K +    A+D+  +++GKG     I +  ++ AL E  E  KA  +  
Sbjct: 448 VQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILR 507

Query: 437 KM--RGLN---------------------LEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           +M  RGL                      ++ + +++   +  +    ++  A      +
Sbjct: 508 EMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSM 567

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            +M   P+V  Y  +  GLCK   +D AM L  + + +    P    Y   I  +C++  
Sbjct: 568 AQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEE-MKHKNMFPNIVTYTSLIDALCKNHH 626

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
            E+ I +L EM + G  P+    + ++ G+CK G LE A+++F  L  +      N  VY
Sbjct: 627 LERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGY--HLNVQVY 684

Query: 594 DEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
             ++ E  K    D  L       L+ K++ KGC
Sbjct: 685 TAMINELCKAGLFDEALD------LQXKMEDKGC 712



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 172/407 (42%), Gaps = 6/407 (1%)

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
           ++ + +K   N   PD+     ++       ++     V   + K     + +   TLI 
Sbjct: 82  VISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSVLANILKRGYHPNAITLNTLIK 141

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC  G + +      ++   G  +++  Y  LI GL   G+      LL+ L     + 
Sbjct: 142 GLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKP 201

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D+ +YN+II  LC+ K    A  L+   +   ++P+  T N L+     MG +   F LL
Sbjct: 202 DVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLL 261

Query: 367 AQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFE-ELKGKGYSSVPIYNILMGALL 423
            +M KLK ++  D+  F   +  +GKE ++  A  V    +K      V  YN L+    
Sbjct: 262 NEM-KLK-NINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYF 319

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
            + +VK A Y+F  M    +  N  +++  I    +   + EA     ++   + +P + 
Sbjct: 320 FLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIV 379

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            Y  L  GLCK   ++ A+ L +  +      P  + Y + +  +C+ G  E   E    
Sbjct: 380 TYTSLIDGLCKNHHLERAIALCKK-MKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQR 438

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +  +G   N    + +I+G+CK     EA  + + +  +  + +A T
Sbjct: 439 LLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAIT 485



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 175/392 (44%), Gaps = 16/392 (4%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+      +I+ L     +   L   +++     + + ++Y TLI GLCK G       L
Sbjct: 131 PNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARL 190

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
            R+++ + +  D  +Y  +I  L     +G ACDL  +++  G   ++  YN+++ G C 
Sbjct: 191 LRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCI 250

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           +    +A+ L       ++ PD  T N L+    + G+M     +LA M  +K  +  D+
Sbjct: 251 MGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVM--MKACIKPDV 308

Query: 381 EKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             +   + G     ++  A  VF  +   G + +V  Y  ++  L +   V +A+ LF +
Sbjct: 309 VTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEE 368

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M+  N+  + ++++  I    ++  +  A     K+ E    P V +Y  L   LCK G 
Sbjct: 369 MKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGR 428

Query: 498 IDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           ++ A      +LV+    NV +      Y + I  +C++    + +++ ++M  +GC P+
Sbjct: 429 LENAKEFFQRLLVKGYHLNVQT------YNVMINGLCKADLFGEAMDLKSKMEGKGCMPD 482

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
            +    II  + +    ++A K+   +  R L
Sbjct: 483 AITFKTIICALFEKDENDKAEKILREMIARGL 514



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 116/507 (22%), Positives = 200/507 (39%), Gaps = 82/507 (16%)

Query: 138 FFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRN 197
           +FH     +G++ N  SY  L   L +                 G    +  +L K+  +
Sbjct: 154 YFHDQVVAQGFQLNQVSYRTLINGLCKT----------------GETKAVARLLRKLEGH 197

Query: 198 LCKPDVFAYTAMIRVLAAERNL-DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
             KPDV  Y  +I  L   + L DAC  ++ EM    +  +V+ Y  L+ G C  G +  
Sbjct: 198 SVKPDVVMYNTIIHSLCKNKLLGDAC-DLYSEMIVKGISPNVVTYNALVYGFCIMGHLKE 256

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVG----------KAC---DLL--KDLVD 301
              L  EMK   I  D   +  LI+ L  EGK+           KAC   D++    L+D
Sbjct: 257 AFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLID 316

Query: 302 --------------------SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
                               SG   ++  Y ++I GLC+ K  D+A  LFE     ++ P
Sbjct: 317 GYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIP 376

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALD 399
           D  T   L+    +   ++    L  +M++    +  D+  +   L  + K  R+  A +
Sbjct: 377 DIVTYTSLIDGLCKNHHLERAIALCKKMKEQ--GIQPDVYSYTILLDALCKGGRLENAKE 434

Query: 400 VFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV 458
            F+ L  KGY  +V  YN+++  L +     +A+ L  KM G     ++++F   I    
Sbjct: 435 FFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALF 494

Query: 459 ESGDILEACECHNKII-----EMSQV------------------PSVAAYNCLTKGLCKI 495
           E  +  +A +   ++I     E  +V                  P V  Y  L  G   +
Sbjct: 495 EKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLV 554

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
            E+  A  +    +  +   P    Y + I  +C+    ++ + +  EM  +   PN V 
Sbjct: 555 NELKHAKYVFYS-MAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVT 613

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRER 582
            +++I  +CK+  LE A  +   ++E 
Sbjct: 614 YTSLIDALCKNHHLERAIALLKEMKEH 640



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 88/169 (52%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+V  YT MI  L  ++ +D  + ++EEMK   +  +++ Y +LI  LCK   + R   L
Sbjct: 574 PNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIAL 633

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
            +EMKE+GI  D   Y +L++GL   G++  A ++ + L+  GY  ++ +Y ++I  LC+
Sbjct: 634 LKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCK 693

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
              FD+A  L          PD  T + ++    E    D   K+L +M
Sbjct: 694 AGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEM 742



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 84/437 (19%), Positives = 184/437 (42%), Gaps = 28/437 (6%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P  F +  ++  L   ++    + ++++ + +    D+     L+   C    +     +
Sbjct: 61  PPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSV 120

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              + + G   +      LI+GL   G++ KA      +V  G++ +   Y ++I GLC+
Sbjct: 121 LANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCK 180

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             +     +L        + PD    N ++    +   + +   L ++M  +   ++ ++
Sbjct: 181 TGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEM--IVKGISPNV 238

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             +   + G      +  A  +  E+K K  +  V  +N L+ AL + G++K A  +   
Sbjct: 239 VTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAV 298

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M    ++ + ++++  I  +     +  A      + +    P+V  Y  +  GLCK   
Sbjct: 299 MMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKM 358

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           +D AM L  + +      P    Y   I  +C++   E+ I +  +M ++G  P+    +
Sbjct: 359 VDEAMSLFEE-MKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYT 417

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL---K 614
            ++  +CK G LE A++ F     ++LL +            H+  +T +++++GL    
Sbjct: 418 ILLDALCKGGRLENAKEFF-----QRLLVKG----------YHLNVQTYNVMINGLCKAD 462

Query: 615 FFG----LESKLKAKGC 627
            FG    L+SK++ KGC
Sbjct: 463 LFGEAMDLKSKMEGKGC 479


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 116/488 (23%), Positives = 212/488 (43%), Gaps = 39/488 (7%)

Query: 106 QVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKH-----------NFAS 154
           + + E  K    +PD       V+++  L   FF     Q+G              N   
Sbjct: 14  EAIVEEMKYAGFSPD-------VQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAIL 66

Query: 155 YNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
           YN L  CL +                 G +AE    L++M ++ C P+V +Y  +I    
Sbjct: 67  YNNLISCLCK----------------AGMLAEAESYLKRMPQH-CAPNVVSYNIIIDGYC 109

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
             RN++  L    EM++        AY +++   CK G V +  ++F EM   G   D  
Sbjct: 110 KARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIV 169

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
            + VL+ GL    K+ +A +L + +   G + D+  YN++I GLC+ K+ D+A  L E  
Sbjct: 170 NFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERM 229

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEE 392
            Q+D++P F T   L+    +  R+   +++  +M +               + G  K  
Sbjct: 230 KQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKAR 289

Query: 393 RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
           R   A ++F+E++G+G S +V  YN L+  LL   +++ A+ L   M       N  ++ 
Sbjct: 290 RPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYE 349

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
           I I    ++  + EA +  + + +   VPS+  +  L   L + G +D A  L ++ +  
Sbjct: 350 ILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKE-MSR 408

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
           +          + +  + R G  ++  + L +MT  G  P++     ++ G+C  G  ++
Sbjct: 409 INCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQ 468

Query: 572 ARKVFTNL 579
           ARK+   L
Sbjct: 469 ARKLVEEL 476



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 152/360 (42%), Gaps = 43/360 (11%)

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  L +   V +   +  EMK  G   D   + +LI G    G   + C  L  ++++G 
Sbjct: 1   IRKLVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGL 60

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             +  +YN++I  LC+     +A    +   Q   AP+  + N ++         D + K
Sbjct: 61  FPNAILYNNLISCLCKAGMLAEAESYLKRMPQ-HCAPNVVSYNIII---------DGYCK 110

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYNILMGALL 423
                       A ++EK   FL               E++  G+   P  Y+ ++ +  
Sbjct: 111 ------------ARNIEKALAFL--------------REMEELGHPPTPHAYSSIVQSFC 144

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G V KA+ +F +M     E + ++F++ +     +  I EA E    +      P V 
Sbjct: 145 KTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVV 204

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            YN +  GLCK  ++D A+ L+   +      PT   Y   I H+C+    ++  EV  +
Sbjct: 205 TYNTMIAGLCKWKKLDEAVFLLER-MKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEK 263

Query: 544 MTQEGCPPNEVICSA--IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
           M +  CP  E   S   +I+G+CK     EA+++F  +R R +   + T+V    L+E +
Sbjct: 264 MAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGI---SPTVVTYNTLLEGL 320



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 169/415 (40%), Gaps = 46/415 (11%)

Query: 225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
           + EEMK      DV ++  LI G  K G   RG      M E G+  +  +Y  LI  L 
Sbjct: 16  IVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLC 75

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
             G + +A   LK +       ++  YN II G C+ +  +KA        +    P   
Sbjct: 76  KAGMLAEAESYLKRM-PQHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPH 134

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFE 402
             + ++    + G +     + A+M         D+  F   L G  +  +I  A ++F 
Sbjct: 135 AYSSIVQSFCKTGNVSKAMDVFAEMPAK--GCEPDIVNFNVLLSGLWRARKIHEARELFR 192

Query: 403 ELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
            +  +G    V  YN ++  L +  ++ +A++L  +M+  ++    ++++  I    +  
Sbjct: 193 SMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFA 252

Query: 462 DILEACECHNKII------------------------------EMSQ-------VPSVAA 484
            + +A E   K+                               EM Q        P+V  
Sbjct: 253 RLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVT 312

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN L +GL    ++  AM L    L  V + P  F Y + I  +C++ + E+  ++L+ M
Sbjct: 313 YNTLLEGLLSTAKLQDAMELTYFMLDQVPA-PNMFTYEILISSLCKTDQVEEAFKLLSAM 371

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER--KLLTEANTIVYDEIL 597
             +G  P+  I   ++S + + G L++A +++  +     + L  ++ I+ D IL
Sbjct: 372 RDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGIL 426



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 106/215 (49%), Gaps = 5/215 (2%)

Query: 394 IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           +  A  + EE+K  G+S  V  + +L+    + G  ++      +M    L  N++ ++ 
Sbjct: 10  VAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNN 69

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
            I C  ++G + EA E + K +     P+V +YN +  G CK   I+ A+  +R+ +  +
Sbjct: 70  LISCLCKAGMLAEA-ESYLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALAFLRE-MEEL 127

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              PT   Y+  +   C++G   K ++V  EM  +GC P+ V  + ++SG+ +   + EA
Sbjct: 128 GHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEA 187

Query: 573 RKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           R++F ++  R    + + + Y+ ++    K K  D
Sbjct: 188 RELFRSMNSRG--CKPDVVTYNTMIAGLCKWKKLD 220



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 74/158 (46%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S  ++ + +E+   M   +  P++F Y  +I  L     ++   ++   M+       + 
Sbjct: 322 STAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLK 381

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            +  L+  L + GR+    EL++EM             +L++G++  G V +A D LK +
Sbjct: 382 IWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQM 441

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
            D+G   D   Y+ ++ GLC   + D+A KL E  V+D
Sbjct: 442 TDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRD 479



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ E  ++L  MR     P +  +  ++  LA    LD    +++EM +   +  V +  
Sbjct: 360 QVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSN 419

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            L+ G+ + G V    +  ++M + GI+ D+  Y  L+ GL  +GK  +A  L+++LV  
Sbjct: 420 ILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRD 479

Query: 303 G 303
           G
Sbjct: 480 G 480


>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
 gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
          Length = 888

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/474 (24%), Positives = 196/474 (41%), Gaps = 100/474 (21%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL-- 248
            E MR    +P+ F +T+++   A  R++   L   EEMK + +E  V+ Y  LI G   
Sbjct: 276 FENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLEMTVVTYSILIAGYGK 335

Query: 249 ---------------------------------CKGGRVVRGHELFREMKENGI------ 269
                                            C+ G + R  EL REM+E+GI      
Sbjct: 336 TNDAESADKLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDV 395

Query: 270 -------------------LIDR----------AIYGVLIEGLVGEGKVGKACDLLKDLV 300
                              + +R            YG LI   V  GKV KA  + K++ 
Sbjct: 396 YHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEME 455

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + +   Y+ +I G   +  F  A+ +FE  ++  L PD +  N L+    +MG MD
Sbjct: 456 SHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMD 515

Query: 361 NFFKLLAQMEKLK--------------FSVAADLEKFFEFLVGKEERIMMALDVFEELKG 406
              ++  +M+K +              F+VA D+++              ALD  + ++ 
Sbjct: 516 RAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKR--------------ALDTLDLMRR 561

Query: 407 KGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G + +V  YN L+  L+   +V++A+ +  KM    +  N  +++I ++ +  SGDI +
Sbjct: 562 SGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGK 621

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A E   KI E      V  Y  L +  CK G + +A+ + R+         T F Y + I
Sbjct: 622 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT-FIYNILI 680

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
               R G+  +  +++ +M ++G PPN    ++ I+  CK G ++ A  V   +
Sbjct: 681 DGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEM 734



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 141/350 (40%), Gaps = 23/350 (6%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G KHN  +Y+ L      N      D            A    I E M ++  +PD   Y
Sbjct: 458 GIKHNNKTYSMLI-----NGFIHLHD-----------FANAFSIFEDMIKSGLQPDRAIY 501

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             ++       N+D  +R++E MKK+ ++     +  +I G    G + R  +    M+ 
Sbjct: 502 NLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRR 561

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           +G       Y  LI GL+ + +V +A  +L  +  +G   +   Y  I+ G        K
Sbjct: 562 SGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGK 621

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A++ F    +  L  D      LL  C + GRM +    LA   ++ F         +  
Sbjct: 622 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQS---ALAVTREMSFQKIPRNTFIYNI 678

Query: 387 LVGKEER---IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
           L+    R   +  A D+ +++K  G   ++  +   + A  + G++++A  +  +M  + 
Sbjct: 679 LIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVG 738

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
           L+ N  +F+  I+   +      A +C  ++      P  AAY+CL   L
Sbjct: 739 LKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSL 788



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 98/227 (43%), Gaps = 16/227 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G      +YNAL + L R +                ++   + +L+KM      P+ 
Sbjct: 560 RRSGCAPTVMTYNALIHGLIRKH----------------QVERAVSVLDKMSIAGIAPNE 603

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT ++R  AA  ++      + ++K+  ++ DV  Y TL+   CK GR+     + RE
Sbjct: 604 HTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTRE 663

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M    I  +  IY +LI+G    G V +A DL+K + + G   ++  + S I   C+   
Sbjct: 664 MSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGD 723

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
             +A  + +      L P+  T   L+   A++   D   K   +M+
Sbjct: 724 MQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMK 770



 Score = 38.9 bits (89), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 25/129 (19%)

Query: 150 HNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAM 209
           H F SY  +  C    ++ RA + + E+ D                    KP+V  +T +
Sbjct: 709 HTFTSY--INACCKAGDMQRAENVIQEMADVG-----------------LKPNVKTFTTL 749

Query: 210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH------ELFRE 263
           I+  A     D  L+ +EEMK   ++ D  AY  L+  L     V+ G        + RE
Sbjct: 750 IKGWAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGILSVCRE 809

Query: 264 MKENGILID 272
           M EN + +D
Sbjct: 810 MFENDLTVD 818


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 221/489 (45%), Gaps = 23/489 (4%)

Query: 133 TLASKFFHWAGKQKGYKH-NFASYNALAYCLSR---------NNLFRAADQVPELMDSQG 182
           +++S+FF     Q  +K+  F + +    C +R          ++F   D++   +   G
Sbjct: 13  SISSRFFGHFQPQNPHKNCRFRNVDDAVTCFNRMVRVFPPPPTSVF---DKLLGAIVRMG 69

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
                + +  +++     P +  +T +I     + +      +   + K   + +++ + 
Sbjct: 70  HYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFN 129

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           T+I G C  G + +  +  + +   G L D+  YG LI GL   G++  A  LL+++  S
Sbjct: 130 TIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKS 189

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
             + +L +Y+++I GLC+      A  L     +  +  D  T N L+  C  +GR    
Sbjct: 190 SVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEV 249

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
            +LL +M  ++ +V  D +  F  L+    KE RI+ A  V   +  +G    +  YN L
Sbjct: 250 TQLLTKM--VRENVDPD-DYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNAL 306

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           M        V +A  LF +M    LE + L++++ I  + ++  + EA     ++   + 
Sbjct: 307 MEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           VP++A+YN L  GLC  G I     L+ +  G+ A  P    Y + I  +C+ G   + +
Sbjct: 367 VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGS-AQPPDVVTYNILIDALCKEGRILEAL 425

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
            VL  M ++G  PN V  +A++ G C    +  A+ +F  + +  L  E + + Y+ ++ 
Sbjct: 426 GVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGL--EPDILNYNVLIN 483

Query: 599 EHMKKKTAD 607
            + K +  D
Sbjct: 484 GYCKTEMVD 492



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 130/510 (25%), Positives = 214/510 (41%), Gaps = 22/510 (4%)

Query: 99  NQFQWGPQVVTELSKLRRVTP--DLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYN 156
           +QF +G  ++  LSK  ++     L+ E+ K    P L     + A      K  F S +
Sbjct: 159 DQFTYG-TLINGLSKNGQIKAALHLLQEMEKSSVQPNLV---MYSALIDGLCKDGFVS-D 213

Query: 157 ALAYC--LSRNNLFRAADQVPELMD---SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIR 211
           AL  C  +    +   A     L+D   S GR  E+ ++L KM R    PD + +  +I 
Sbjct: 214 ALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILID 273

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
            L  E  +     V   M K   + D++ Y  L+ G C    V    ELF  M + G+  
Sbjct: 274 ALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEP 333

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           D   Y VLI+G      V +A  L K+L +      +  YNS+I GLC   +     KL 
Sbjct: 334 DVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLL 393

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK- 390
           +        PD  T N L+    + GR+     +L  M  +K  V  ++  +   + G  
Sbjct: 394 DEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMM--MKKGVKPNIVTYNAMMDGYC 451

Query: 391 -EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
               + +A D+F  +   G    +  YN+L+    +   V +A+ LF +MR  NL  +  
Sbjct: 452 LRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIA 511

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           S++  I      G I    E  +++ +  Q P V  YN L    CK    D A+ L R  
Sbjct: 512 SYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI 571

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
           +  +   P  +     + ++C+  + +   + L  +   GC PN    + +I+ +CK G+
Sbjct: 572 VEGI--WPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGS 629

Query: 569 LEEARKVFTNLRERKLLTEANTIVYDEILI 598
             EA  + + + +     +A T    EI+I
Sbjct: 630 FGEAMLLLSKMEDNDRPPDAITF---EIII 656



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/498 (23%), Positives = 212/498 (42%), Gaps = 73/498 (14%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELM------------------DSQGRI 184
           + GY+ N  ++N +   +C++   +F+A D    L+                     G+I
Sbjct: 118 KSGYQPNLVTFNTIINGFCIN-GMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQI 176

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLA---------------AERNL---------- 219
              L +L++M ++  +P++  Y+A+I  L                 ER +          
Sbjct: 177 KAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSL 236

Query: 220 -DACLRV--WEE-------MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
            D C  V  W+E       M ++ V+ D   +  LI  LCK GR++    +   M + G 
Sbjct: 237 IDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGE 296

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
             D   Y  L+EG      V +A +L   +V  G   D+  YN +I G C+ K  D+A  
Sbjct: 297 KPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMV 356

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-------EKLKFSVAADLEK 382
           LF+     +L P  ++ N L+      GR+ +  KLL +M       + + +++  D   
Sbjct: 357 LFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILID--- 413

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
                + KE RI+ AL V   +  KG   ++  YN +M        V  A  +F +M   
Sbjct: 414 ----ALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS 469

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            LE + L++++ I  + ++  + EA     ++   + +P +A+YN L  GLC +G I   
Sbjct: 470 GLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHV 529

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
             L+ D + +    P    Y + +   C++   +K I +  ++  EG  P+     AI+ 
Sbjct: 530 QELL-DEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIV-EGIWPDFYTNHAIVD 587

Query: 562 GMCKHGTLEEARKVFTNL 579
            +CK   L+ A     +L
Sbjct: 588 NLCKGEKLKMAEDALKHL 605



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 104/261 (39%), Gaps = 54/261 (20%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           +KG K N  +YNA+   YCL RNN+  A D                 I  +M ++  +PD
Sbjct: 433 KKGVKPNIVTYNAMMDGYCL-RNNVNVAKD-----------------IFNRMVKSGLEPD 474

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           +  Y  +I        +D  + +++EM+   +  D+ +Y +LI GLC  GR+    EL  
Sbjct: 475 ILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLD 534

Query: 263 EMKENGILIDRAIYGVLIEGL---------------VGEG-------------------K 288
           EM ++G   D   Y +L++                 + EG                   K
Sbjct: 535 EMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEK 594

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           +  A D LK L+  G   ++  Y  +I  LC+   F +A  L      +D  PD  T   
Sbjct: 595 LKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEI 654

Query: 349 LLVCCAEMGRMDNFFKLLAQM 369
           ++    +    D   KL  +M
Sbjct: 655 IIGVLLQRNETDKAEKLREEM 675



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 99/235 (42%), Gaps = 21/235 (8%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYC------------- 161
           VT + + +   + NN  +A   F+   K  G + +  +YN L   YC             
Sbjct: 441 VTYNAMMDGYCLRNNVNVAKDIFNRMVK-SGLEPDILNYNVLINGYCKTEMVDEAIVLFK 499

Query: 162 -LSRNNLFRAADQVPELMD---SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER 217
            +   NL         L+D   + GRI  + E+L++M  +   PDV  Y  ++      +
Sbjct: 500 EMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQ 559

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
             D  + ++ ++ +  +  D      ++  LCKG ++    +  + +  +G   +   Y 
Sbjct: 560 PFDKAISLFRQIVEG-IWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYT 618

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
           +LI  L  +G  G+A  LL  + D+    D   +  IIG L +  + DKA KL E
Sbjct: 619 ILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLRE 673


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 204/454 (44%), Gaps = 43/454 (9%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+ + +  ++    ++  L   L    +M+   +  D + Y TL+   C+ G +     L
Sbjct: 207 PNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTL 266

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              MK+ GI+  RA Y  L+      G + +A D+++ +   G+  DL  YN +  GLC+
Sbjct: 267 LARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQ 326

Query: 321 VKQFDKAYKLFEVTVQDDL-APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
             + D+A+KL +   Q  + +PD  T N L+  C +  R  +   LL +M +     +  
Sbjct: 327 AGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLV 386

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
                   + +E ++  AL   E +  +G +  V  YN L+ A  + G V KA  L  +M
Sbjct: 387 THNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEM 446

Query: 439 --RGLNLE---VNSLSFSIAIQCHVESGDIL----------------------------- 464
              GL ++   +N+L +++  +   E  + L                             
Sbjct: 447 VRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKP 506

Query: 465 EACEC-HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
           E   C  +++I+    PS++ YN L KGL  +G++  A+  + + L  +   P +  Y +
Sbjct: 507 EPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNE-LMEMGLVPDDTTYNI 565

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I   C+ G+ EK  +  N+M +    P+ V C+ +++G+C +G LE+A K+F +  E+ 
Sbjct: 566 IIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKG 625

Query: 584 LLTEANTIVYDEILIEHMKKKTADLVLSGLKFFG 617
              + + I Y+ ++    K    D   + L+FF 
Sbjct: 626 --KKVDVITYNTLIQALCKDNDVD---TALRFFA 654



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/460 (23%), Positives = 198/460 (43%), Gaps = 59/460 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS-------------------QGRI 184
           K++G     A+YN L    +R    + A  V E M +                    G++
Sbjct: 271 KKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKV 330

Query: 185 AEMLEILEKMRR-NLCKPDVFAYTAMIRV-LAAERNLDACLRVWEEMKKDLVEADVMAYV 242
            E  ++ ++M +  +  PDV  Y  ++      +R+ DA L + EEM++  V++ ++ + 
Sbjct: 331 DEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDA-LNLLEEMREKGVKSSLVTHN 389

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++ GLC+ G++         M E G+  D   Y  LI+     G V KA  L+ ++V S
Sbjct: 390 IIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRS 449

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + D    N+++  LC+ K++++A +L     Q    PD                    
Sbjct: 450 GLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPD-------------------- 489

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL-KGKGYSSVPIYNILMGA 421
                     + S    +  +F     KE +   AL +++E+ K K   S+  YN L+  
Sbjct: 490 ----------EVSYGTVMAAYF-----KEYKPEPALCLWDEMIKRKLTPSISTYNTLIKG 534

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L  +G++ +A+    ++  + L  +  +++I I  + + GD+ +A + HNK++E S  P 
Sbjct: 535 LSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPD 594

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V   N L  GLC  G ++ AM L    +           Y   I  +C+  + +  +   
Sbjct: 595 VVTCNTLMNGLCLYGRLEKAMKLFESWVEK-GKKVDVITYNTLIQALCKDNDVDTALRFF 653

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            +M   G  P+    + ++S + + G   EA+K+   L E
Sbjct: 654 ADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNE 693



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 185/428 (43%), Gaps = 54/428 (12%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R ++ L +LE+MR    K  +  +  +++ L  E  L+  L   E M ++ +  DV+ Y 
Sbjct: 365 RSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYN 424

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TLI   CK G V +   L  EM  +G+ +D      L+  L  E +  +A +LL+     
Sbjct: 425 TLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQR 484

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G+  D   Y +++    +  + + A  L++  ++  L P  ST N L+   + MG++   
Sbjct: 485 GFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEA 544

Query: 363 FKLLAQMEKL--------------KFSVAADLEKFFEF---------------------- 386
              L ++ ++               +    DLEK F+F                      
Sbjct: 545 IDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNG 604

Query: 387 --LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
             L G+ E+ M   + + E KGK    V  YN L+ AL +  +V  AL  F  M    L+
Sbjct: 605 LCLYGRLEKAMKLFESWVE-KGKKV-DVITYNTLIQALCKDNDVDTALRFFADMEVRGLQ 662

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV------PSV-AAYNCLTKGLCKIGE 497
            +  ++++ +    E+G  +EA +  +K+ E  ++      PS+ ++   +  G  K  E
Sbjct: 663 PDVFTYNVLLSALSEAGRSVEAQKMLHKLNESGKLYGRFFYPSIKSSVEAVETG--KDPE 720

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           + + +    + +GN   G  +  Y   I  +C  G+ ++   VL+EM Q+G   +     
Sbjct: 721 VKSDI----ESVGNT-QGDDQESYNKYIKELCIGGQLKEAKAVLDEMMQKGMSVDNSTYI 775

Query: 558 AIISGMCK 565
            ++ G+ K
Sbjct: 776 TLMEGLIK 783



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 19/183 (10%)

Query: 151 NFASYNALAYCLSR-NNLFRAADQVPELMD------------------SQGRIAEMLEIL 191
           + ++YN L   LS    L  A D++ ELM+                   +G + +  +  
Sbjct: 524 SISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFH 583

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
            KM  N  KPDV     ++  L     L+  ++++E   +   + DV+ Y TLI  LCK 
Sbjct: 584 NKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKD 643

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
             V      F +M+  G+  D   Y VL+  L   G+  +A  +L  L +SG       Y
Sbjct: 644 NDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESGKLYGRFFY 703

Query: 312 NSI 314
            SI
Sbjct: 704 PSI 706


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 202/423 (47%), Gaps = 16/423 (3%)

Query: 183 RIAEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           R  E L++L +M + + C PDV +YT +I  L  E  +     ++ EM +  V  +V+ Y
Sbjct: 251 RSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTY 310

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +++  LCK   + +   + R+M +N I  D   Y  +I G    G+  +A  + K++  
Sbjct: 311 NSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTR 370

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR--- 358
            G   D+  +NS++  LC+ K+  +A ++F         PD  + + LL   A  GR   
Sbjct: 371 EGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVD 430

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIY 415
           M+N F  +         + AD   F   +    +R MM  AL +F E++G+G S +V  Y
Sbjct: 431 MNNLFHSMTDN-----GIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTY 485

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             ++ AL  +G +  A+    +M  + L+ N++ +   IQ     GD+++A E  +++++
Sbjct: 486 ATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMD 545

Query: 476 MS-QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                P++  ++ +   LC  G +  A   V + + ++   P  F +   I   C  G+ 
Sbjct: 546 QGIPRPNITFFSSIIHSLCNEGRVMNAQD-VFNLVIHIGDRPDIFTFNSLIDGYCLVGKM 604

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           +K   VL+ M   G  P+ V  S +I+G  K G +++   +F  +  +++  +  T+ Y 
Sbjct: 605 DKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRV--KPTTVTYS 662

Query: 595 EIL 597
            +L
Sbjct: 663 LVL 665



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 177/397 (44%), Gaps = 11/397 (2%)

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE-LFREMKENGILIDR 273
           A+R  +A   +   M +     D  +Y T+I  LC G R     + L R  K +G   D 
Sbjct: 213 AKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDV 272

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             Y ++I GL  EG++ KAC+L  ++V  G   ++  YNSI+  LC+ +  DKA  +   
Sbjct: 273 VSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQ 332

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKE 391
              + + PD  T   ++   + +GR     K+  +M +    +  D+  F   +  + K 
Sbjct: 333 MFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTRE--GLIPDIVTFNSLMDSLCKH 390

Query: 392 ERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
           +R   A ++F  +  KG+   +  Y+IL+      G       LF  M    +  +S  F
Sbjct: 391 KRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCF 450

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +I I  H + G + EA     ++      P+V  Y  +   LC++G +  AM  +   + 
Sbjct: 451 NILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMI- 509

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP-PNEVICSAIISGMCKHGTL 569
           ++   P    Y   I   C  G+  K  E+++EM  +G P PN    S+II  +C  G +
Sbjct: 510 SIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRV 569

Query: 570 EEARKVFT---NLRERKLLTEANTIVYDEILIEHMKK 603
             A+ VF    ++ +R  +   N+++    L+  M K
Sbjct: 570 MNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDK 606



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 193/438 (44%), Gaps = 25/438 (5%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVL-AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           +L +M    C PD F+Y  +I+ L    R+ +A   +    K D    DV++Y  +I GL
Sbjct: 223 LLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGL 282

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
              G + +   LF EM + G++ +   Y  ++  L     + KA  +L+ + D+  + D 
Sbjct: 283 FMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDE 342

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             Y ++I G   + ++ +A K+F+   ++ L PD  T N L         MD+  K    
Sbjct: 343 VTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSL---------MDSLCKHKRS 393

Query: 369 MEKLKF--SVAA-----DLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
            E  +   S+A      D+  +   L G   E R +   ++F  +   G  +    +NIL
Sbjct: 394 KEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNIL 453

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + A  + G + +AL +F +MRG  +  N ++++  I      G + +A E  +++I +  
Sbjct: 454 INAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGL 513

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P+   Y+ L +G C  G++  A  LV + +      P    ++  I  +C  G      
Sbjct: 514 KPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQ 573

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           +V N +   G  P+    +++I G C  G +++A  V   +      TE + + Y  ++ 
Sbjct: 574 DVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAG--TEPDVVTYSTLIN 631

Query: 599 EHMKKKTADLVLSGLKFF 616
            + K    D    GL  F
Sbjct: 632 GYFKSGRID---DGLILF 646



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 117/569 (20%), Positives = 236/569 (41%), Gaps = 51/569 (8%)

Query: 92  ITDAFRKN----QFQWGPQVVTELSKLRRVT------PDLVAEVLKV-----ENNPTLAS 136
           + DAF  N        G +    L  L R+T      PD+V+  + +     E   + A 
Sbjct: 233 VPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKAC 292

Query: 137 KFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV-PELMDSQ-------------- 181
             F+    QKG   N  +YN++ + L +      A+ V  ++ D+               
Sbjct: 293 NLFNEM-VQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHG 351

Query: 182 ----GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
               GR  E  ++ ++M R    PD+  + +++  L   +       ++  +     + D
Sbjct: 352 YSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPD 411

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           +++Y  L+ G    GR V  + LF  M +NGI+ D   + +LI      G + +A  +  
Sbjct: 412 IISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFT 471

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           ++   G   ++  Y ++I  LCR+ +   A +     +   L P+    + L+      G
Sbjct: 472 EMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHG 531

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK---EERIMMALDVFEELKGKG-YSSVP 413
            +    +L+++M  +   +      FF  ++     E R+M A DVF  +   G    + 
Sbjct: 532 DLIKAKELVSEM--MDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIF 589

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            +N L+     +G++ KA  +   M     E + +++S  I  + +SG I +      ++
Sbjct: 590 TFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREM 649

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVCRS 531
           +     P+   Y+ +  GL + G   AA  +  + +  G   S  T   Y + +  +CR+
Sbjct: 650 LCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSIST---YTIILQGLCRN 706

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
              ++ I + +++          I + +I  + K    EEA  +F ++    L+  A+T 
Sbjct: 707 NCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPNAST- 765

Query: 592 VYDEILIEHMKKKT---ADLVLSGLKFFG 617
            Y  ++I  +K+ +   AD++ S ++  G
Sbjct: 766 -YGVMIINLLKEGSVEEADIMFSSMEKTG 793



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/436 (22%), Positives = 178/436 (40%), Gaps = 57/436 (13%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYC-------LSRNNLFRAADQVPELMDS------- 180
           A++ FH     KG+K +  SY+ L +        +  NNLF +      + DS       
Sbjct: 396 AAEIFHSIA-TKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILI 454

Query: 181 -----QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
                +G + E L I  +MR     P+V  Y  +I  L     L   +    +M    ++
Sbjct: 455 NAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLK 514

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI-LIDRAIYGVLIEGLVGEGKVGKACD 294
            + + Y +LI G C  G +++  EL  EM + GI   +   +  +I  L  EG+V  A D
Sbjct: 515 PNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQD 574

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           +   ++  G R D+  +NS+I G C V + DKA+ + +  V     PD  T + L+    
Sbjct: 575 VFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYF 634

Query: 355 EMGRMDNFFKLLAQM-------EKLKFSVAAD----------LEKFFEFLVGKEERIMM- 396
           + GR+D+   L  +M         + +S+  D           +K F  ++     + + 
Sbjct: 635 KSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSIS 694

Query: 397 -----------------ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
                            A+ +F +L        + I N ++ AL ++   ++A  LF  +
Sbjct: 695 TYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASV 754

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
               L  N+ ++ + I   ++ G + EA    + + +    PS    N + + L + GEI
Sbjct: 755 SASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQKGEI 814

Query: 499 DAAMMLVRDCLGNVAS 514
             A   +    G + S
Sbjct: 815 VKAGYYMSKVDGTIIS 830



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 146/332 (43%), Gaps = 25/332 (7%)

Query: 147 GYKHNFASYNAL--AYCLSRNNLFRAADQVPELMD-------------------SQGRIA 185
           G K N   Y++L   +C +  +L +A + V E+MD                   ++GR+ 
Sbjct: 512 GLKPNTVVYHSLIQGFC-THGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVM 570

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
              ++   +     +PD+F + ++I        +D    V + M     E DV+ Y TLI
Sbjct: 571 NAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLI 630

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G  K GR+  G  LFREM    +      Y ++++GL   G+   A  +  ++++SG  
Sbjct: 631 NGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTA 690

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
             +  Y  I+ GLCR    D+A  LF      +L  + + +N ++    ++ R +    L
Sbjct: 691 MSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDL 750

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
            A +        A         + KE  +  A  +F  ++  G + S  + N ++  LL+
Sbjct: 751 FASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQ 810

Query: 425 IGEVKKALYLFGKMRG--LNLEVNSLSFSIAI 454
            GE+ KA Y   K+ G  ++LE ++ S  I++
Sbjct: 811 KGEIVKAGYYMSKVDGTIISLEASTTSLLISL 842



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/326 (19%), Positives = 132/326 (40%), Gaps = 8/326 (2%)

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK-LFEVT 334
           YG+L++      +          L+ +G R D  + N+ +  LC  K+ D+A   L    
Sbjct: 168 YGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEALSMLLHRM 227

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEE 392
            +    PD  + N ++       R      +L +M K     + D+  +   + G   E 
Sbjct: 228 SELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGD-GCSPDVVSYTMVIHGLFMEG 286

Query: 393 RIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
            I  A ++F E+  KG   +V  YN ++ AL +   + KA  +  +M   +++ + ++++
Sbjct: 287 EISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYT 346

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
             I  +   G   EA +   ++     +P +  +N L   LCK      A  +    +  
Sbjct: 347 AMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHS-IAT 405

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
               P    Y++ +      G    +  + + MT  G   +    + +I+   K G ++E
Sbjct: 406 KGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDE 465

Query: 572 ARKVFTNLRERKLLTEANTIVYDEIL 597
           A  +FT +R + +    N + Y  ++
Sbjct: 466 ALLIFTEMRGQGV--SPNVVTYATVI 489



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           N   K LC     D A+ ++   +  +   P  F Y   I  +C    +++ +++L  MT
Sbjct: 204 NTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMT 263

Query: 546 Q-EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           + +GC P+ V  + +I G+   G + +A  +F  + ++ ++   N + Y+ I+    K +
Sbjct: 264 KGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVV--PNVVTYNSIVHALCKAR 321

Query: 605 TAD 607
             D
Sbjct: 322 AMD 324


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/447 (23%), Positives = 209/447 (46%), Gaps = 43/447 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG + E +E+L K+    C+PD+ +Y A+++ L   +  D    +  EM +     +V  
Sbjct: 191 QGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVAT 250

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + TLI  LC+ G   + HE   +M E+G   D  +Y  +I+G+  +G    A D+L  + 
Sbjct: 251 FNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMP 310

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + ++  YN+++ GLC  +++++A  L     Q+D   D  T N L+    + G +D
Sbjct: 311 SYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVD 370

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
              +LL QM                                  L+      V  Y  ++ 
Sbjct: 371 RVIELLEQM----------------------------------LEHGCIPDVITYTTVIN 396

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G V +A+ L   M     + N++S++I ++    +   ++A E  + +I+   +P
Sbjct: 397 GFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLP 456

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +   +N L   +CK G ++ A+ L++  L N  S P    Y+  I  + ++G+ E+ +E+
Sbjct: 457 NPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCS-PDLISYSTVIDGLGKAGKTEEALEL 515

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           LN M  +G  PN +I S++ S + + G  ++  ++F ++++  + ++A   +Y+ ++   
Sbjct: 516 LNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDA--ALYNAVISSL 573

Query: 601 MKKKTADLVLSGLKFFGLESKLKAKGC 627
            K+   D     + FF   + + + GC
Sbjct: 574 CKRWETD---RAIDFF---AYMVSNGC 594



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 174/383 (45%), Gaps = 8/383 (2%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMK-KDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           P+ + Y  ++R L A   +   L V +EM  +       M +V L    C+GG       
Sbjct: 106 PNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVIL-EAACRGGGFRSAVR 164

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
             + +   G  +D     +++  +  +G V +  +LL+ L   G   D+  YN+++ GLC
Sbjct: 165 ALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLC 224

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
             K++D   +L    V+    P+ +T N L+      G  +   + L+QM   +     D
Sbjct: 225 MAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMP--EHGCTPD 282

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
           L  +   + G  K+    +A D+   +   G   +V  YN ++  L      ++A  L  
Sbjct: 283 LRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLA 342

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M   +  ++ ++F+I +    ++G +    E   +++E   +P V  Y  +  G CK G
Sbjct: 343 EMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEG 402

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            +D A+ML+++ +      P    Y + +  +CR+       E+++ M Q+GC PN V  
Sbjct: 403 LVDEAVMLLKN-MSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTF 461

Query: 557 SAIISGMCKHGTLEEARKVFTNL 579
           + +I+ MCK G +E+A ++   +
Sbjct: 462 NTLINFMCKKGLVEQAIELLKQM 484



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 97/214 (45%), Gaps = 11/214 (5%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           N ++Y +    L RA   V    D+Q       E++  M +  C P+   +  +I  +  
Sbjct: 422 NTISYTIVLKGLCRAERWV----DAQ-------ELISHMIQQGCLPNPVTFNTLINFMCK 470

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
           +  ++  + + ++M  +    D+++Y T+I GL K G+     EL   M   GI  +  I
Sbjct: 471 KGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTII 530

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           Y  +   L  EG+  K   +   + D+  R+D  +YN++I  LC+  + D+A   F   V
Sbjct: 531 YSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMV 590

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            +   P+ ST   L+   A  G +     LL+++
Sbjct: 591 SNGCMPNESTYTILIRGLASEGLVREAQDLLSEL 624



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 127/309 (41%), Gaps = 42/309 (13%)

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
           G+  D  + L  +G  A +  YN++I G CR  Q   A +L        + P+  T  P+
Sbjct: 58  GRTADAARALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAV---PVPPNAYTYFPI 114

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY 409
           +      G + +                                   AL V +E+  +G 
Sbjct: 115 VRSLCARGLIAD-----------------------------------ALTVLDEMPLRGC 139

Query: 410 SSV-PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           ++  P+ ++++ A    G  + A+     +      ++S + ++ +    E G + E  E
Sbjct: 140 AATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVE 199

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
              K+      P + +YN + KGLC     D    L+ + +  V   P    +   I ++
Sbjct: 200 LLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVE-MVRVGCPPNVATFNTLIAYL 258

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           CR+G  E++ E L++M + GC P+  + + II G+CK G  E A  + + +    L  + 
Sbjct: 259 CRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGL--KP 316

Query: 589 NTIVYDEIL 597
           N + Y+ +L
Sbjct: 317 NVVCYNTVL 325



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/288 (19%), Positives = 124/288 (43%), Gaps = 1/288 (0%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S  R  E  ++L +M +  C  D   +  ++        +D  + + E+M +     DV+
Sbjct: 330 SAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVI 389

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I G CK G V     L + M   G   +   Y ++++GL    +   A +L+  +
Sbjct: 390 TYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHM 449

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G   +   +N++I  +C+    ++A +L +  + +  +PD  + + ++    + G+ 
Sbjct: 450 IQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKT 509

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNIL 418
           +   +LL  M     +    +       + +E R    + +F+ ++     S   +YN +
Sbjct: 510 EEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAV 569

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           + +L +  E  +A+  F  M       N  +++I I+     G + EA
Sbjct: 570 ISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREA 617


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 116/449 (25%), Positives = 214/449 (47%), Gaps = 27/449 (6%)

Query: 185 AEMLEILEKMRRNLC----KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           A+ + +L K+R  +      PDV+ Y+ +I      R  D   +V  EM++     + + 
Sbjct: 222 ADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVT 281

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI GLC+ G V       ++M++ G++ D   YG LI GL    +  +A  LL ++ 
Sbjct: 282 YNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS 341

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +  + ++ +Y ++I G  R    D+A+K+ +  V   + P+  T + L+    +MG+MD
Sbjct: 342 CAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMD 401

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
               LL QM  ++ S   D   +   + G  +      A  +  E++  G S +V  Y+I
Sbjct: 402 RASLLLKQM--VRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSI 459

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++  L + GE +KA  L  +M    L+ N+  ++  I  +   G++  ACE  +K+ +++
Sbjct: 460 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 519

Query: 478 QVPSVAAYNCLTKGLCKIGEIDA-----AMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
            +P +  YN L  GL K+G ++      A M  R  L      P EF Y+  I    ++G
Sbjct: 520 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLL------PNEFTYSGLIHGYLKNG 573

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           + E   +++  M   G  PN+VI   ++    K   +E+    F ++ ++ ++ +    +
Sbjct: 574 DLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNR--I 631

Query: 593 YDEILIEHMKK----KTADLVLSGLKFFG 617
           Y  ILI ++      + A  VLSG++  G
Sbjct: 632 YG-ILIHNLSSSGNMEAAFRVLSGIEKNG 659



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 184/397 (46%), Gaps = 7/397 (1%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++LE+M     KP+ F Y  +I     E N+     ++++M K  V  D+  Y +LI GL
Sbjct: 475 DLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGL 534

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
            K GRV    + F +M+E G+L +   Y  LI G +  G +  A  L++ ++D+G + + 
Sbjct: 535 SKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPND 594

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
            IY  ++    +    +K    F+  +   +  D      L+   +  G M+  F++L+ 
Sbjct: 595 VIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSG 654

Query: 369 MEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
           +E  K     D+  +   + G  K      A  + +E+  KG   ++  YN L+  L + 
Sbjct: 655 IE--KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKS 712

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G++  A  +F  +    L  N ++++  I    + GDI  A   +N+++     P    Y
Sbjct: 713 GDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVY 772

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           + LT G    G+++ AM L+ +      +  + F   +     C+ G+ ++ +++L+ + 
Sbjct: 773 SVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVD--GFCKRGKMQETLKLLHVIM 830

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             G  PN +    IISG+ + G L E   +F  L+++
Sbjct: 831 GRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQK 867



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 115/478 (24%), Positives = 213/478 (44%), Gaps = 31/478 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           +++G   N  +YN L   L R+     A    + M+  G                   R 
Sbjct: 271 RERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRS 330

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E   +L++M     KP+V  Y  +I     E N D   ++ +EM    V+ + + Y  L
Sbjct: 331 NEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNL 390

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + GLCK G++ R   L ++M  +    D   Y ++IEG         A  LL ++ ++G 
Sbjct: 391 VRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGI 450

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  Y+ +I GLC+  + +KA  L E      L P+     PL+      G +    +
Sbjct: 451 SPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACE 510

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IYNILM 419
           +  +M K+  +V  DL  +   + G  K  R+  +   F +++ +G   +P    Y+ L+
Sbjct: 511 IFDKMTKV--NVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGL--LPNEFTYSGLI 566

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
              L+ G+++ A  L  +M    L+ N + +   ++ + +S DI +       +++   +
Sbjct: 567 HGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVM 626

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
                Y  L   L   G ++AA  ++     N  S P    Y+  I  +C++ + EK   
Sbjct: 627 LDNRIYGILIHNLSSSGNMEAAFRVLSGIEKN-GSVPDVHVYSSLISGLCKTADREKAFG 685

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +L+EM+++G  PN V  +A+I G+CK G +  AR VF ++  + L+   N + Y  ++
Sbjct: 686 ILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLV--PNCVTYTSLI 741



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 119/546 (21%), Positives = 223/546 (40%), Gaps = 94/546 (17%)

Query: 89  ARFITDAFRKNQFQWGPQVVTELSKLRRVTPDL---------VAEVLKVENNPTLASKFF 139
           A  I+   R+       ++  +++K+  V PDL         +++V +VE     ++K+F
Sbjct: 493 APLISGYCREGNVSLACEIFDKMTKVN-VLPDLYCYNSLIFGLSKVGRVEE----STKYF 547

Query: 140 HWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG----------------- 182
               +++G   N  +Y+ L +   +N    +A+Q+ + M   G                 
Sbjct: 548 AQM-QERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFK 606

Query: 183 --RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
              I ++    + M       D   Y  +I  L++  N++A  RV   ++K+    DV  
Sbjct: 607 SDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHV 666

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI GLCK     +   +  EM + G+  +   Y  LI+GL   G +  A ++   ++
Sbjct: 667 YSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSIL 726

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   +   Y S+I G C+V     A+ L+   +   + PD    + L   C       
Sbjct: 727 AKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC------- 779

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
                         S A DLE+              A+ + EE+  +G++S+  +N L+ 
Sbjct: 780 --------------SSAGDLEQ--------------AMFLIEEMFLRGHASISSFNNLVD 811

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G++++ L L   + G  L  N+L+    I    E+G +    E H   +E+ Q  
Sbjct: 812 GFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKL---SEVHTIFVELQQKT 868

Query: 481 SVAA---------------------YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           S +A                      + + +  CK G +D A+ML RD +   ++     
Sbjct: 869 SESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALML-RDVIVAKSAPMGCS 927

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            Y   + ++CR G+  + + +L EM + G  P+E  C  +++ +   G ++E   V  N+
Sbjct: 928 SYLAIVDNLCRKGKLSEALNLLKEMDKRGICPSENQCLILLTNLHTSGYIQEHNTVLDNM 987

Query: 580 RERKLL 585
              K L
Sbjct: 988 LCHKWL 993



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 167/404 (41%), Gaps = 60/404 (14%)

Query: 240 AYVTLIMGLCKGG----------RVVRGH--------ELFREMKENGILIDRAIYGVLIE 281
           A+  L M LC G           +++R +         + R + ++G     A+  VL++
Sbjct: 124 AFAHLAMSLCAGSLFNLANGLLIKMIRAYPSPPVVLASIHRALSDSGHR-SPAVLDVLVD 182

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
                G+V  A +++  + D G    +   N+++  L R       +K+ E  V   ++P
Sbjct: 183 TYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISP 242

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVF 401
           D  T + L+    ++   D   K+L +M +    +       +  L+    R     + F
Sbjct: 243 DVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNT---VTYNVLIAGLCRSGAVEEAF 299

Query: 402 EELKG-KGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
              K  + Y  VP    Y  L+  L +     +A  L  +M    L+ N + ++  I   
Sbjct: 300 GFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGF 359

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML----VRDC----- 508
           +  G+  EA +   +++     P+   Y+ L +GLCK+G++D A +L    VRD      
Sbjct: 360 MREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDT 419

Query: 509 -------------------------LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
                                    + N    P  + Y++ I  +C+SGE EK  ++L E
Sbjct: 420 ITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEE 479

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           MT +G  PN  + + +ISG C+ G +  A ++F  + +  +L +
Sbjct: 480 MTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPD 523


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 112/478 (23%), Positives = 206/478 (43%), Gaps = 25/478 (5%)

Query: 111 LSKLRR-VTPDLVAEVLKVENNPTLASKFFHWAGKQK-GYKHNFASYNALAYCLSRNNLF 168
           + +LRR ++ D V ++ +   +  LA + F      + G++H+  + NAL    +R    
Sbjct: 16  VGRLRREISTDAVVKIFQCLKDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRH 75

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
           R A                  +L+        PDV  +  +I      R  +    V  E
Sbjct: 76  REAGN----------------LLKNELATTFLPDVETWNVLITGYCLAREPEEAFAVIRE 119

Query: 229 MKKDLVEADVMAYVTLIM-GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
           M++D   A  +    L++ GLCK G+V+   + F     NG  ID   Y  +++ L    
Sbjct: 120 MEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNK 179

Query: 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
           K+  A  L++ +  +G    +  YN+++ GLC++ + ++A  L    V +   PD  T  
Sbjct: 180 KIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 239

Query: 348 PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELK 405
            L+    +  R    +KL  +M  L+  +  D   +   + G  +  +I  A  V++ + 
Sbjct: 240 SLIDGLGKEKRSFEAYKLFKEM-ALR-GLVLDTVCYTALIRGLLQAGKIPQASSVYKTMT 297

Query: 406 GKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
            +G    V   + ++  L + G +  A+ +F  M    L  N + +S  I    ++  + 
Sbjct: 298 SQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMD 357

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
            A E   ++ +    P    YN L  GLCK G+++AA     + L      P  + Y + 
Sbjct: 358 CALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEML-EAGCKPDVYTYNIL 416

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           +   C++G  +    V ++M+   C PN V    +ISG+CK   L +A   F +++ER
Sbjct: 417 VSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKER 474



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 181/411 (44%), Gaps = 38/411 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G++   ++  E    N C  D+  YTA++  LA  + +   + + E++  +     +  
Sbjct: 143 SGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIAT 202

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ GLCK GR+    +L R++ +NG   D   Y  LI+GL  E +  +A  L K++ 
Sbjct: 203 YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMA 262

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D   Y ++I GL +  +  +A  +++        PD  T++ ++    + G   
Sbjct: 263 LRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAG--- 319

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
                                           RI  A+ +F+ ++ +G + +  +Y+ L+
Sbjct: 320 --------------------------------RIGAAVRIFKSMEARGLAPNEVVYSALI 347

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L +  ++  AL +  +M+      ++++++I I    +SGD+  A    ++++E    
Sbjct: 348 HGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCK 407

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P V  YN L  G CK G  DAA  +  D + +    P    Y   I  +C+  +  K   
Sbjct: 408 PDVYTYNILVSGFCKAGNTDAACGVFDD-MSSSHCSPNVVTYGTLISGLCKRRQLTKASL 466

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
               M + GCPP+  + S+++ G+CK G LE    +F  + ER  +  + T
Sbjct: 467 YFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEM-ERSGVANSQT 516



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 180/402 (44%), Gaps = 36/402 (8%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           +I + + ++EK+  N C P +  Y A++  L     L+  + +  ++  +    DV+ Y 
Sbjct: 180 KIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 239

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +LI GL K  R    ++LF+EM   G+++D   Y  LI GL+  GK+ +A  + K +   
Sbjct: 240 SLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQ 299

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D+   +++I GLC+  +   A ++F+      LAP+    + L+    +  +MD  
Sbjct: 300 GCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 359

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422
            ++LAQM+K  F     +                                  YNIL+  L
Sbjct: 360 LEMLAQMKK-AFCTPDTI---------------------------------TYNILIDGL 385

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            + G+V+ A   F +M     + +  +++I +    ++G+   AC   + +      P+V
Sbjct: 386 CKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNV 445

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             Y  L  GLCK  ++  A +  +  +      P  F Y+  +  +C+SG+ E    + +
Sbjct: 446 VTYGTLISGLCKRRQLTKASLYFQH-MKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFD 504

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           EM + G   N    + +I  +CK   ++EA  +F  +R+  +
Sbjct: 505 EMERSG-VANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM 545



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 104/449 (23%), Positives = 184/449 (40%), Gaps = 65/449 (14%)

Query: 120 DLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD 179
           D +A+  K+++   L  K         G     A+YNAL   L +               
Sbjct: 173 DWLAKNKKIQDAVALMEKI-----TANGCTPTIATYNALLNGLCK--------------- 212

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
             GR+ E +++L K+  N C PDV  YT++I  L  E+      ++++EM    +  D +
Sbjct: 213 -MGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTV 271

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI GL + G++ +   +++ M   G + D      +I+GL   G++G A  + K +
Sbjct: 272 CYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSM 331

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   +  +Y+++I GLC+ ++ D A ++     +    PD  T N L+         
Sbjct: 332 EARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI--------- 382

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
           D   K            + D+E    F              F+E+   G    V  YNIL
Sbjct: 383 DGLCK------------SGDVEAARAF--------------FDEMLEAGCKPDVYTYNIL 416

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G    A  +F  M   +   N +++   I    +   + +A      + E   
Sbjct: 417 VSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGC 476

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKI 537
            P    Y+ L  GLCK G+++   ML  +     VA+  T  +    I H+C++   ++ 
Sbjct: 477 PPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRL---IFHLCKANRVDEA 533

Query: 538 IEVLNEMTQEGCPP----NEVICSAIISG 562
           + + N + +EG P     N +I + I S 
Sbjct: 534 VSLFNAIRKEGMPHPYAYNSIISTLIKSA 562



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 1/247 (0%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI   + I + M      P+   Y+A+I  L   R +D  L +  +MKK     D + Y
Sbjct: 319 GRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITY 378

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GLCK G V      F EM E G   D   Y +L+ G    G    AC +  D+  
Sbjct: 379 NILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSS 438

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           S    ++  Y ++I GLC+ +Q  KA   F+   +    PD    + L+    + G+++ 
Sbjct: 439 SHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEG 498

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
              L  +ME+   + +    +   F + K  R+  A+ +F  ++ +G      YN ++  
Sbjct: 499 GCMLFDEMERSGVANSQTRTRLI-FHLCKANRVDEAVSLFNAIRKEGMPHPYAYNSIIST 557

Query: 422 LLEIGEV 428
           L++  +V
Sbjct: 558 LIKSAKV 564



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 133/314 (42%), Gaps = 7/314 (2%)

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G++  +   N+++    R K+  +A  L +  +     PD  T N L+         +  
Sbjct: 54  GFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEA 113

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILM 419
           F ++ +ME+  + VA  L+     L G  K  +++ A+D FE     G +  +  Y  ++
Sbjct: 114 FAVIREMEE-DYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIV 172

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L +  +++ A+ L  K+          +++  +    + G + EA +   KI++    
Sbjct: 173 DWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCT 232

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P V  Y  L  GL K      A  L ++ +           Y   I  + ++G+  +   
Sbjct: 233 PDVVTYTSLIDGLGKEKRSFEAYKLFKE-MALRGLVLDTVCYTALIRGLLQAGKIPQASS 291

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           V   MT +GC P+ V  S +I G+CK G +  A ++F ++  R L    N +VY  ++  
Sbjct: 292 VYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGL--APNEVVYSALIHG 349

Query: 600 HMKKKTADLVLSGL 613
             K +  D  L  L
Sbjct: 350 LCKARKMDCALEML 363


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 123/505 (24%), Positives = 207/505 (40%), Gaps = 95/505 (18%)

Query: 134 LASKFFHWAG-KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
           L   F  +AG  ++GY  N  +YN L   L                  + RI+E   +  
Sbjct: 120 LREGFAAFAGILRRGYSPNIVTYNTLIKGLCM----------------EHRISEATRLFL 163

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL------VEADVMAYVTLIM 246
           +M++  C PDV  Y  +I+ L    N++  L++ +EM  D+       + +V+ Y  ++ 
Sbjct: 164 RMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVD 223

Query: 247 GLCKGGRVVRGHELFREMKENGILI----------------------------------- 271
           GLCK GR     +LF EMK  G++                                    
Sbjct: 224 GLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQP 283

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           D   + VLI+ L  EGKV +A  LL  +++SG   DL  YNS+I G C V   + A +LF
Sbjct: 284 DMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELF 343

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE 391
                    PD  + N L+   ++  +++   KL  +M                 LVGK 
Sbjct: 344 VSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEM----------------LLVGKR 387

Query: 392 ERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
             ++                   Y+ L+  +   G+V  A  LF  M+   +  NS ++ 
Sbjct: 388 PNVI------------------TYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYG 429

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
           I +    ++  + EA +   ++   +    +   NCL  GLCK G+++ A  L    L N
Sbjct: 430 IFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEK-LSN 488

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
               P    Y + I   CR G+ +K   ++ +M   GC P+ +  + ++ G  +   LEE
Sbjct: 489 EGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEE 548

Query: 572 ARKVFTNLRERKLLTEANT--IVYD 594
             ++   + ++ +  +A T  IV D
Sbjct: 549 VVQLLHRMAQKDVSPDAITCSIVVD 573



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 97/449 (21%), Positives = 193/449 (42%), Gaps = 51/449 (11%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L     M R+   P + ++  ++  LA  ++      ++ +M+   + +D      L+  
Sbjct: 54  LHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNC 113

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC   R+  G   F  +   G   +   Y  LI+GL  E ++ +A  L   +   G   D
Sbjct: 114 LCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPD 173

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQD------DLAPDFSTVNPLLVCCAEMGRMDN 361
           +  Y ++I GLC     + A KL +  + D      +  P+  T N ++    ++GR D 
Sbjct: 174 VVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDE 233

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMG 420
                                              A  +FEE+K +G   S+  YN L+ 
Sbjct: 234 -----------------------------------AKQLFEEMKTQGMIPSIISYNSLIH 258

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
                G+ +++  L  +M    L+ + ++F++ I    + G ++EA +    +IE   VP
Sbjct: 259 GFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVP 318

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            +  YN L +G C +G++++A  L    + +    P    Y + I    ++ + E+ +++
Sbjct: 319 DLVTYNSLIEGFCMVGDLNSARELFVS-MPSKGCEPDVISYNVLINGYSKTLKVEEAMKL 377

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
            NEM   G  PN +   +++ G+   G +++A+K+F+ ++   +    N+  Y  I ++ 
Sbjct: 378 YNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGI--AENSYTYG-IFLDG 434

Query: 601 MKKKTADLVLSGLKFFGLESKLKAKGCKL 629
           + K   D +   +K F   ++LK+   KL
Sbjct: 435 LCKN--DCLFEAMKLF---TELKSSNFKL 458



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 98/211 (46%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ E +++  +M     +P+V  Y ++++ +     +D   +++  MK   +  +   Y 
Sbjct: 370 KVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYG 429

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
             + GLCK   +    +LF E+K +   ++      LI+GL   GK+  A +L + L + 
Sbjct: 430 IFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNE 489

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G+  ++  Y  +I G CR  Q DKA  L +    +   PD  T N L+    E  +++  
Sbjct: 490 GHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEV 549

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEER 393
            +LL +M +   S  A        ++ K+E+
Sbjct: 550 VQLLHRMAQKDVSPDAITCSIVVDMLSKDEK 580



 Score = 45.8 bits (107), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 79/198 (39%), Gaps = 19/198 (9%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNN-LFRAADQVPELMDSQGRIAEMLEILEK 193
           A K F    K  G   N  +Y      L +N+ LF A     EL  S  ++   +E L  
Sbjct: 409 AKKLFSVM-KAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLE--IENLNC 465

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           +   LCK                  L+    ++E++  +  E +V+ Y  +I G C+ G+
Sbjct: 466 LIDGLCKAG---------------KLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQ 510

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           V + + L ++M+ NG   D   Y  L+ G     K+ +   LL  +       D    + 
Sbjct: 511 VDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSI 570

Query: 314 IIGGLCRVKQFDKAYKLF 331
           ++  L + +++ +   L 
Sbjct: 571 VVDMLSKDEKYQECLHLL 588


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 190/403 (47%), Gaps = 8/403 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E + +L++M+    + D+  YT++IR       LD    +++E+ +       + Y
Sbjct: 226 GKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITY 285

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G CK GR+    E+F  M E G+  +   Y  LI+GL G GK  +A  LL  ++ 
Sbjct: 286 NTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQ 345

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                ++  YN II  LC+      A ++ E+  +    PD  T N LL      G +D 
Sbjct: 346 KDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDE 405

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGK-GYSSVPIYNIL 418
             KLL  M K       D+  F   + G  K  R+  ALD+++ L  K G   +   NIL
Sbjct: 406 ASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNIL 465

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG--DILEACECHNKIIEM 476
           + + L+ G+V KA+ L+ ++    +  NS +++  I    ++G  ++ +   C  ++ E+
Sbjct: 466 LNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSEL 525

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              PSV  YNCL   LCK G +D A  L  + +    S P    + + I    ++G+ + 
Sbjct: 526 P--PSVFDYNCLLSSLCKKGTLDQAWRLFEE-MQRDDSFPDVISFNIMIDGSLKAGDIKS 582

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
              +L  M+  G  P+    S +I+   K G L+EA   F  +
Sbjct: 583 AESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKM 625



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 192/413 (46%), Gaps = 14/413 (3%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +V+ Y  +++ L         + +  EM+++ +  DV++Y T+I G C+G  + +  +L 
Sbjct: 141 NVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLA 200

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            EM+ +G       +G+LI+     GK+ +A  LLK++   G  ADL +Y S+I G C  
Sbjct: 201 NEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDC 260

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            + D+   LF+  ++   +P   T N L+    ++GR+    ++   M  ++  V  ++ 
Sbjct: 261 GELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFM--MERGVRPNVY 318

Query: 382 KFFEFL-----VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFG 436
            +   +     VGK +  +  L++   L+     +V  YNI++  L +   V  AL +  
Sbjct: 319 TYTGLIDGLCGVGKTKEALQLLNLM--LQKDEEPNVVTYNIIINKLCKDSLVADALEIVE 376

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV--PSVAAYNCLTKGLCK 494
            M+      ++++++  +      GD+ EA +    +++ S    P V ++N L  GLCK
Sbjct: 377 LMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCK 436

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
              +  A+ +    +  + +G       + +    +SG+  K +E+  +++     PN  
Sbjct: 437 GNRLHQALDIYDLLVEKLGAGDI-VTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSD 495

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
             + +I G CK G L  A+ +   +R  +L    +   Y+ +L    KK T D
Sbjct: 496 TYTTMIDGFCKTGMLNVAKGLLCKMRLSEL--PPSVFDYNCLLSSLCKKGTLD 546



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 157/347 (45%), Gaps = 43/347 (12%)

Query: 256 RGHEL----FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           R HE+    +R+M E    I+      L+E  V   K G A  +L  ++  G+  ++  Y
Sbjct: 86  RNHEVAFSFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALMLKRGFAFNVYNY 145

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N ++ GLCR  +F KA  L     Q+ L PD  + N ++                     
Sbjct: 146 NILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIR-------------------- 185

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKK 430
             F    +LEK              AL +  E++G G S S+  + IL+ A  + G++ +
Sbjct: 186 -GFCEGKELEK--------------ALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDE 230

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A+ L  +M+   LE + + ++  I+   + G++       ++++E    P    YN L +
Sbjct: 231 AMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIR 290

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           G CK+G +  A  +  + +      P  + Y   I  +C  G+ ++ +++LN M Q+   
Sbjct: 291 GFCKLGRLKEASEIF-EFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEE 349

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           PN V  + II+ +CK   + +A ++   +++R+  T  + I Y+ +L
Sbjct: 350 PNVVTYNIIINKLCKDSLVADALEIVELMKKRR--TRPDNITYNSLL 394



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 148/364 (40%), Gaps = 52/364 (14%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           QK  + N  +YN +   L +++L                +A+ LEI+E M++   +PD  
Sbjct: 345 QKDEEPNVVTYNIIINKLCKDSL----------------VADALEIVELMKKRRTRPDNI 388

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKD--LVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
            Y +++  L A+ +LD   ++   M KD    + DV+++  LI GLCKG R+ +  +++ 
Sbjct: 389 TYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYD 448

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            + E     D     +L+   +  G V KA +L K + +S    +   Y ++I G C+  
Sbjct: 449 LLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTG 508

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
             + A  L       +L P     N LL    + G +D  ++L  +M++           
Sbjct: 509 MLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQR----------- 557

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                                     +  V  +NI++   L+ G++K A  L   M    
Sbjct: 558 -----------------------DDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAG 594

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           L  +  ++S  I   ++ G + EA    +K+I+    P     + + K     GE D   
Sbjct: 595 LSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDSVLKYCISQGETDKLT 654

Query: 503 MLVR 506
             V+
Sbjct: 655 EFVK 658



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 115/287 (40%), Gaps = 25/287 (8%)

Query: 108 VTELSKLRRVTPDLVAEV-----LKVENNPTLASKFFHWAGKQKGYKH-NFASYNALAYC 161
           + EL K RR  PD +        L  + +   ASK  +   K   Y   +  S+NAL + 
Sbjct: 374 IVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHG 433

Query: 162 LSRNNLFRAADQVPELMDSQ-------------------GRIAEMLEILEKMRRNLCKPD 202
           L + N    A  + +L+  +                   G + + +E+ +++  +   P+
Sbjct: 434 LCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPN 493

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
              YT MI        L+    +  +M+   +   V  Y  L+  LCK G + +   LF 
Sbjct: 494 SDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFE 553

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EM+ +    D   + ++I+G +  G +  A  LL  +  +G   DL  Y+ +I    ++ 
Sbjct: 554 EMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLG 613

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
             D+A   F+  +     PD    + +L  C   G  D   + + ++
Sbjct: 614 YLDEAISFFDKMIDSGFEPDAHICDSVLKYCISQGETDKLTEFVKKL 660



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 1/178 (0%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +L KMR +   P VF Y  ++  L  +  LD   R++EEM++D    DV+++  +I G  
Sbjct: 516 LLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSL 575

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K G +     L   M   G+  D   Y  LI   +  G + +A      ++DSG+  D  
Sbjct: 576 KAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAH 635

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS-TVNPLLVCCAEMGRMDNFFKLL 366
           I +S++       + DK  +  +  V  D+  D   T   +   C+  G MD   +LL
Sbjct: 636 ICDSVLKYCISQGETDKLTEFVKKLVDKDVVLDKELTCTVMDYMCSSSGNMDIAKRLL 693


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 120/516 (23%), Positives = 222/516 (43%), Gaps = 66/516 (12%)

Query: 131 NPTLASKFFHWAGK-------------------QKGYKH-NFASYNALAYCLSRNNLFRA 170
           NP  A  FFH+A +                      +KH  F     L   L+   LF +
Sbjct: 102 NPRTAFNFFHFASETLFEPAVAVTVVDLLIHVYSTQFKHLGFGVVFELFSLLANKGLFPS 161

Query: 171 ADQVPELMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWE 227
                 L+ S  +  E+    ++ + M      PDV+ ++ M+        +D  + ++ 
Sbjct: 162 LKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFR 221

Query: 228 EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
           +M+K  V  +V+ Y  +I GLCK GR+    +   +M++  +      YGVLI GLV   
Sbjct: 222 KMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLE 281

Query: 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
           +  +A  +LK++ D GY  +  +YN++I G CR+     A ++ +  + + ++P+  T N
Sbjct: 282 RFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCN 341

Query: 348 PLLVCCAEMGRMDNFFKLLAQM--------------------------EKLKFSVAADLE 381
            L+    +  +M++   LL +M                            L F +   L 
Sbjct: 342 SLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLR 401

Query: 382 KF------FEFLV------GKEERIMMALDVFEELKGKGYSSVPIY-NILMGALLEIGEV 428
            F         LV      GK+     A++++  L  KG+++  +  N L+  L E G  
Sbjct: 402 NFKPNDGLLTLLVSGLCQNGKQSE---AIELWYRLLEKGFAANTVTSNALIHGLCEAGSK 458

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
           ++A  L  +M    L ++S+S++  I    + G + E  +   +++     P +  YN L
Sbjct: 459 EEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNML 518

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
             GLC +G+I+ A  L  +C  N  + P  + Y + I   C++   E+  ++  EM    
Sbjct: 519 LHGLCNMGKIEEAGGLWHECKKN-GNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMK 577

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
              N V+   +I   C++G + EA ++  ++R R +
Sbjct: 578 IEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGI 613



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 111/501 (22%), Positives = 212/501 (42%), Gaps = 60/501 (11%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-------------------GRIAEM 187
           G   N  +YN + + L +N     A Q  E M+ +                    R  E 
Sbjct: 227 GVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEA 286

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
             IL++M      P+   Y  +I       N+   L++ ++M  + +  + +   +LI G
Sbjct: 287 NCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQG 346

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYG------------------------------ 277
            CK  ++     L  EM   G +I++  +                               
Sbjct: 347 YCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPN 406

Query: 278 -----VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
                +L+ GL   GK  +A +L   L++ G+ A+    N++I GLC     ++A KL +
Sbjct: 407 DGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLK 466

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--K 390
             ++  L  D  + N L++ C + G+++  FKL  +M  ++  +  D+  +   L G   
Sbjct: 467 EMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEM--VRRGIQPDMYTYNMLLHGLCN 524

Query: 391 EERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
             +I  A  ++ E K  G +     Y I++    +   V++   LF +M  + +E N++ 
Sbjct: 525 MGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVV 584

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           +   I+ + E+G++ EA    + +       + A Y+ L  GL  IG +D+A  L+ D +
Sbjct: 585 YGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLL-DEM 643

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
                 P    Y   I   C+ G+  K+  +L EM+     PN++  + +I+G CK G +
Sbjct: 644 RKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNM 703

Query: 570 EEARKVFTNLRERKLLTEANT 590
           + A K+   + ++ ++ +A T
Sbjct: 704 KAAAKLLNEMAQKGIVPDAVT 724



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 173/392 (44%), Gaps = 38/392 (9%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           + +L I+E + RN  KP+    T ++  L         + +W  + +    A+ +    L
Sbjct: 390 SALLFIMEMLLRNF-KPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNAL 448

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLC+ G      +L +EM E G+++D   Y  LI     EGKV +   L +++V  G 
Sbjct: 449 IHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGI 508

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           + D+  YN ++ GLC + + ++A  L+    ++   PD  T   ++    +  R++   K
Sbjct: 509 QPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEK 568

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE 424
           L  +M  +K    A                                   +Y  L+ A  E
Sbjct: 569 LFQEMVTMKIEQNA----------------------------------VVYGTLIRAYCE 594

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G +++A  L   MR   +   S ++S  I      G +  A +  +++ +    P+V  
Sbjct: 595 NGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVC 654

Query: 485 YNCLTKGLCKIGEIDAAMMLVRD-CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           Y  L  G CK+G++     ++++  + NV   P +  Y + I   C+ G  +   ++LNE
Sbjct: 655 YTALIGGYCKLGQMHKVDSILQEMSINNVH--PNKITYTIMINGHCKLGNMKAAAKLLNE 712

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           M Q+G  P+ V  +A+ +G CK G +EEA KV
Sbjct: 713 MAQKGIVPDAVTYNALTNGFCKEGKMEEALKV 744



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 154/340 (45%), Gaps = 5/340 (1%)

Query: 168 FRAADQVPELMDS----QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACL 223
           F+  D +  L+ S     G+ +E +E+  ++       +     A+I  L    + +   
Sbjct: 403 FKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAA 462

Query: 224 RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
           ++ +EM +  +  D ++Y TLI+  CK G+V  G +L  EM   GI  D   Y +L+ GL
Sbjct: 463 KLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGL 522

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
              GK+ +A  L  +   +G   D   Y  +I G C+  + ++  KLF+  V   +  + 
Sbjct: 523 CNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNA 582

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE 403
                L+    E G M   F+L   M        +         +     +  A  + +E
Sbjct: 583 VVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDE 642

Query: 404 LKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
           ++ +G S +V  Y  L+G   ++G++ K   +  +M   N+  N ++++I I  H + G+
Sbjct: 643 MRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGN 702

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           +  A +  N++ +   VP    YN LT G CK G+++ A+
Sbjct: 703 MKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEAL 742



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 160/343 (46%), Gaps = 8/343 (2%)

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           ELF  +   G+         L+  LV   +V  +  +   +   G   D+ ++++++   
Sbjct: 148 ELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAF 207

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C   + D A +LF    +  +AP+  T N ++    + GR+D  F+   +MEK +  V  
Sbjct: 208 CTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKER--VKP 265

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
            L  +   + G  K ER   A  + +E+  +GY+ +  +YN L+     IG +  AL + 
Sbjct: 266 SLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIR 325

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             M    +  NS++ +  IQ + +S  +  A     +++    V +   +  +   LC  
Sbjct: 326 DDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLK 385

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
              D+A++ + + L      P +    L +  +C++G+  + IE+   + ++G   N V 
Sbjct: 386 CRFDSALLFIMEMLLRNFK-PNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVT 444

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
            +A+I G+C+ G+ EEA K+   + ER L+ +  +I Y+ +++
Sbjct: 445 SNALIHGLCEAGSKEEAAKLLKEMLERGLVLD--SISYNTLIL 485



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 126/284 (44%), Gaps = 19/284 (6%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ E  ++ E+M R   +PD++ Y  ++  L     ++    +W E KK+    D   
Sbjct: 490 EGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYT 549

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G CK  RV  G +LF+EM    I  +  +YG LI      G + +A  L  D+ 
Sbjct: 550 YGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMR 609

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G       Y+S+I GL  +   D A +L +   ++ L+P+      L+    ++G+M 
Sbjct: 610 SRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMH 669

Query: 361 NFFKLLAQME-------KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
               +L +M        K+ +++  +          K   +  A  +  E+  KG   VP
Sbjct: 670 KVDSILQEMSINNVHPNKITYTIMINGH-------CKLGNMKAAAKLLNEMAQKGI--VP 720

Query: 414 ---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
               YN L     + G++++AL +   M    + ++ ++++  I
Sbjct: 721 DAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLI 764



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 19/158 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG----------------RIAEM 187
           + +G     A+Y++L + LS   L  +A+Q+ + M  +G                ++ +M
Sbjct: 609 RSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQM 668

Query: 188 LE---ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            +   IL++M  N   P+   YT MI       N+ A  ++  EM +  +  D + Y  L
Sbjct: 669 HKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNAL 728

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
             G CK G++    ++   M   GI +D   Y  LI+G
Sbjct: 729 TNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDG 766


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 191/436 (43%), Gaps = 42/436 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  +   ++E + ++   PDV  Y  +I        +D  L+V + M    V  DV+ Y
Sbjct: 106 GKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTY 162

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T++  LC  G++ +  E+     +     D   Y +LIE    E  VG+A  LL ++ +
Sbjct: 163 NTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRN 222

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + D+  YN +I G+C+  + D+A K           P+  T N +L      GR  +
Sbjct: 223 KGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMD 282

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
             KLL+ M +                                   KG S SV  +NIL+ 
Sbjct: 283 AEKLLSDMLR-----------------------------------KGCSPSVVTFNILIN 307

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L   G + +A+ +  KM       NSLS++  +    +   +  A E  + ++     P
Sbjct: 308 FLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYP 367

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            +  YN L   LCK G++D A+ ++   L +    P    Y   I  + + G+ E+ I++
Sbjct: 368 DIVTYNTLLTALCKDGKVDVAVEILNQ-LSSKGCSPVLITYNTVIDGLSKVGKTERAIKL 426

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           L+EM ++G  P+ +  S+++SG+ + G ++EA K F +L    L    N I Y+ I++  
Sbjct: 427 LDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDL--EGLGIRPNAITYNSIMLGL 484

Query: 601 MKKKTADLVLSGLKFF 616
            K +  D  +  L + 
Sbjct: 485 CKSRQTDRAIDFLAYM 500



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/429 (24%), Positives = 197/429 (45%), Gaps = 32/429 (7%)

Query: 144 KQKGYKHNFASYNAL--AYCLSR--NNLFRAADQV---PELMD---------SQGRIAEM 187
           +Q G   +  +YN L   YC S   +N  +  D++   P+++            G++ + 
Sbjct: 119 EQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQA 178

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           +E+L++  +  C PDV  YT +I     E  +   +++ +EM+    + DV+ Y  LI G
Sbjct: 179 MEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLING 238

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           +CK GR+    +    M   G   +   + +++  +   G+   A  LL D++  G    
Sbjct: 239 ICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPS 298

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  +N +I  LCR     +A  + E        P+  + NPLL    +  +MD   + L 
Sbjct: 299 VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLD 358

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLE 424
            M  +      D+  +   L    K+ ++ +A+++  +L  KG S V I YN ++  L +
Sbjct: 359 IM--VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSK 416

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
           +G+ ++A+ L  +MR   L+ + +++S  +      G + EA +  + +  +   P+   
Sbjct: 417 VGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAIT 476

Query: 485 YNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           YN +  GLCK  + D A+     M+ + C       PTE  Y + I  +   G A++ ++
Sbjct: 477 YNSIMLGLCKSRQTDRAIDFLAYMISKRC------KPTEATYTILIEGIAYEGLAKEALD 530

Query: 540 VLNEMTQEG 548
           +LNE+   G
Sbjct: 531 LLNELCSRG 539



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 175/389 (44%), Gaps = 26/389 (6%)

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D++   +LI G C+ G+  +   +   ++++G + D   Y VLI G    G++  A  +L
Sbjct: 91  DIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVL 150

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-VCCAE 355
             +       D+  YN+I+  LC   +  +A ++ +  +Q +  PD  T   L+   C E
Sbjct: 151 DRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKE 207

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SV 412
            G +    KLL +M   K S   D+  +   + G  KE R+  A+     +   G   +V
Sbjct: 208 SG-VGQAMKLLDEMRN-KGS-KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNV 264

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             +NI++ ++   G    A  L   M       + ++F+I I      G +  A +   K
Sbjct: 265 ITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEK 324

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILH 527
           +      P+  +YN L  G CK  ++D A+     M+ R C  ++ +      Y   +  
Sbjct: 325 MPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVT------YNTLLTA 378

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           +C+ G+ +  +E+LN+++ +GC P  +  + +I G+ K G  E A K+   +R + L  +
Sbjct: 379 LCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGL--K 436

Query: 588 ANTIVYDEILIEHMKKKTADLVLSGLKFF 616
            + I Y  ++    ++   D     +KFF
Sbjct: 437 PDIITYSSLVSGLSREGKVD---EAIKFF 462



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 159/350 (45%), Gaps = 21/350 (6%)

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           LV  G++      L+ +V  G   D+    S+I G CR+ +  KA  + E+  Q    PD
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 126

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL-----VGKEERIMMA 397
             T N L+    + G +DN  ++L +M     +VA D+  +   L      GK ++ M  
Sbjct: 127 VITYNVLISGYCKSGEIDNALQVLDRM-----NVAPDVVTYNTILRTLCDSGKLKQAMEV 181

Query: 398 LDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
           LD   +L+ + Y  V  Y IL+ A  +   V +A+ L  +MR    + + +++++ I   
Sbjct: 182 LD--RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGI 239

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
            + G + EA +  N +      P+V  +N + + +C  G    A  L+ D L    S P+
Sbjct: 240 CKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCS-PS 298

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
              + + I  +CR G   + I++L +M   GC PN +  + ++ G CK   ++ A +   
Sbjct: 299 VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLD 358

Query: 578 NLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
            +  R      + + Y+ +L    K    D+ +  L      ++L +KGC
Sbjct: 359 IMVSRGCY--PDIVTYNTLLTALCKDGKVDVAVEIL------NQLSSKGC 400



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 159/350 (45%), Gaps = 10/350 (2%)

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           L + G +  G +    M   G + D      LI G    GK  KA  +++ L  SG   D
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 126

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL- 366
           +  YN +I G C+  + D A ++ +   + ++APD  T N +L    + G++    ++L 
Sbjct: 127 VITYNVLISGYCKSGEIDNALQVLD---RMNVAPDVVTYNTILRTLCDSGKLKQAMEVLD 183

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
            Q++K  +          E    KE  +  A+ + +E++ KG    V  YN+L+  + + 
Sbjct: 184 RQLQKECYPDVITYTILIEATC-KESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKE 242

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G + +A+     M     + N ++ +I ++    +G  ++A +  + ++     PSV  +
Sbjct: 243 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTF 302

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           N L   LC+ G +  A+ ++   +      P    Y   +   C+  + ++ IE L+ M 
Sbjct: 303 NILINFLCRQGLLGRAIDILEK-MPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMV 361

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK---LLTEANTIV 592
             GC P+ V  + +++ +CK G ++ A ++   L  +    +L   NT++
Sbjct: 362 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVI 411



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 124/297 (41%), Gaps = 10/297 (3%)

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYT 207
           + +N  SY      ++ N + R+       M S GR  +  ++L  M R  C P V  + 
Sbjct: 251 FLNNMPSYGCQPNVITHNIILRS-------MCSTGRWMDAEKLLSDMLRKGCSPSVVTFN 303

Query: 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
            +I  L  +  L   + + E+M       + ++Y  L+ G CK  ++ R  E    M   
Sbjct: 304 ILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 363

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           G   D   Y  L+  L  +GKV  A ++L  L   G    L  YN++I GL +V + ++A
Sbjct: 364 GCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERA 423

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
            KL +   +  L PD  T + L+   +  G++D   K    +E L     A         
Sbjct: 424 IKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLG 483

Query: 388 VGKEERIMMALDVFEELKGKGYSSV-PIYNILMGALLEIGEVKKALYLFGKM--RGL 441
           + K  +   A+D    +  K        Y IL+  +   G  K+AL L  ++  RGL
Sbjct: 484 LCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 540


>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
          Length = 719

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 118/537 (21%), Positives = 225/537 (41%), Gaps = 27/537 (5%)

Query: 82  QRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHW 141
           +R+ + +A+ +    R+   +W   +V++        P    E++  +NN  L+ +FF W
Sbjct: 55  RRNYTEMAKIVATITREKP-RWEQTLVSDFPSFNFADPLFFRELVATQNNVLLSLRFFQW 113

Query: 142 AGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM----DSQ------------GRIA 185
                    +  S N L   L      RAA  V ++     DS             G I 
Sbjct: 114 LCTNHDCTPDPISSNMLFEALLDAKAVRAAKMVRDIAGFIPDSASLEQYVKCLCGVGFIE 173

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT-- 243
           E +E+  +++    +  + A  +++         +     ++EM K    +D        
Sbjct: 174 EAIEVYFQLKEAGIRISIVACNSILSGCLKAGKTELLFEFYQEMIKAGTASDANTETVGC 233

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           LI   C  G+V RG+EL  +  + G+      Y  LI G           ++L  ++   
Sbjct: 234 LIQAFCDSGQVARGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTMIARN 293

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
           +   +  Y  II GLC+ ++  +AY++F        APD      ++    EMG      
Sbjct: 294 HLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGEAR 353

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIY-NILMG 420
           KL  +M  +   +  +   +   L G  K      A +++ E+  KGY +  +  N ++ 
Sbjct: 354 KLWFEM--MDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIIS 411

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L   G+  +A  +F KM    ++ ++++++  I+   + G + E     N+++     P
Sbjct: 412 ELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQP 471

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           SV+ Y  L    CK G+ +AA  L+ D + +    P  + Y   +    +SG+ E + E+
Sbjct: 472 SVSLYELLIIKSCKDGDFEAAKRLLGD-MSSKGLHPNAYTYDTMLHGSLKSGDFEHVREL 530

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            NE   +G       C+ IIS +C  G  +EA ++F  + E  +  +A+ I Y+ ++
Sbjct: 531 YNETCNKGYGTTTATCNKIISELCSRGKSDEASEMFKKMSETGI--KADAITYNSLI 585



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 182/411 (44%), Gaps = 22/411 (5%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           A M E+L  M      P ++ Y  +I  L          RV+ ++K      D + Y T+
Sbjct: 280 ASMSEVLHTMIARNHLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTM 339

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLC+ G      +L+ EM + G+  +   Y  ++ G +  G   +AC+L  ++ + GY
Sbjct: 340 IHGLCEMGSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGY 399

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
                  N II  LC   + D+A+++F+   +  +  D  T N L+    + G++D    
Sbjct: 400 GTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMN 459

Query: 365 LLAQMEKLKFSVAADLE---KFFEFLV---GKEERIMMALDVFEELKGKG-YSSVPIYNI 417
           LL ++      VA D +     +E L+    K+     A  +  ++  KG + +   Y+ 
Sbjct: 460 LLNEL------VAQDPQPSVSLYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDT 513

Query: 418 LMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           ++   L+ G+ +    L+ +   +G      + +  I+  C     D  EA E   K+ E
Sbjct: 514 MLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISELCSRGKSD--EASEMFKKMSE 571

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGE 533
                    YN L +G CK G++  +M L+ +    VA G  P+   YA  I+ +C++G+
Sbjct: 572 TGIKADAITYNSLIRGFCKEGKVGKSMNLLNEL---VAQGLQPSASSYASLIIQLCQNGD 628

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           AE    +  +M  +G  P+  +   +ISG+CK G   E       + E K+
Sbjct: 629 AESAKRLWGDMVSKGIEPHANLREHLISGLCKQGRATEGMDRLMGMLENKI 679



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 179/411 (43%), Gaps = 6/411 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++A   E+L +  +    P    Y  +I      +N  +   V   M        +  Y
Sbjct: 242 GQVARGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTMIARNHLPTIYTY 301

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I GLCK    +  + +F ++K+ G   DR +Y  +I GL   G  G+A  L  +++D
Sbjct: 302 QEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGEARKLWFEMMD 361

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + +   YN+++ G  +   F++A +L+             T N ++      G+ D 
Sbjct: 362 KGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISELCSRGKSDE 421

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
            F++  +M +    + AD   +   + G  KE ++   +++  EL  +    SV +Y +L
Sbjct: 422 AFEVFKKMSET--GIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELL 479

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G+ + A  L G M    L  N+ ++   +   ++SGD     E +N+      
Sbjct: 480 IIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGY 539

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
             + A  N +   LC  G+ D A  + +  +           Y   I   C+ G+  K +
Sbjct: 540 GTTTATCNKIISELCSRGKSDEASEMFKK-MSETGIKADAITYNSLIRGFCKEGKVGKSM 598

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
            +LNE+  +G  P+    +++I  +C++G  E A++++ ++  + +   AN
Sbjct: 599 NLLNELVAQGLQPSASSYASLIIQLCQNGDAESAKRLWGDMVSKGIEPHAN 649



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 93/219 (42%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ E + +L ++     +P V  Y  +I     + + +A  R+  +M    +  +   
Sbjct: 451 EGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYT 510

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T++ G  K G      EL+ E    G     A    +I  L   GK  +A ++ K + 
Sbjct: 511 YDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISELCSRGKSDEASEMFKKMS 570

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           ++G +AD   YNS+I G C+  +  K+  L    V   L P  S+   L++   + G  +
Sbjct: 571 ETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQGLQPSASSYASLIIQLCQNGDAE 630

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALD 399
           +  +L   M        A+L +     + K+ R    +D
Sbjct: 631 SAKRLWGDMVSKGIEPHANLREHLISGLCKQGRATEGMD 669



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 79/190 (41%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+G+  E  E+ +KM     + D   Y ++IR    E  +D  + +  E+     +  V 
Sbjct: 415 SRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVS 474

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI+  CK G       L  +M   G+  +   Y  ++ G +  G      +L  + 
Sbjct: 475 LYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNET 534

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            + GY       N II  LC   + D+A ++F+   +  +  D  T N L+    + G++
Sbjct: 535 CNKGYGTTTATCNKIISELCSRGKSDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKV 594

Query: 360 DNFFKLLAQM 369
                LL ++
Sbjct: 595 GKSMNLLNEL 604



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 61/144 (42%)

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           +I  L +    D    ++++M +  ++AD + Y +LI G CK G+V +   L  E+   G
Sbjct: 549 IISELCSRGKSDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQG 608

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
           +    + Y  LI  L   G    A  L  D+V  G      +   +I GLC+  +  +  
Sbjct: 609 LQPSASSYASLIIQLCQNGDAESAKRLWGDMVSKGIEPHANLREHLISGLCKQGRATEGM 668

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVC 352
                 +++ + P  +    L  C
Sbjct: 669 DRLMGMLENKIKPKKAAFEDLAEC 692



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 56/123 (45%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+G+  E  E+ +KM     K D   Y ++IR    E  +   + +  E+    ++    
Sbjct: 555 SRGKSDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQGLQPSAS 614

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y +LI+ LC+ G       L+ +M   GI     +   LI GL  +G+  +  D L  +
Sbjct: 615 SYASLIIQLCQNGDAESAKRLWGDMVSKGIEPHANLREHLISGLCKQGRATEGMDRLMGM 674

Query: 300 VDS 302
           +++
Sbjct: 675 LEN 677



 Score = 46.2 bits (108), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 49/104 (47%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ + + +L ++     +P   +Y ++I  L    + ++  R+W +M    +E     
Sbjct: 591 EGKVGKSMNLLNELVAQGLQPSASSYASLIIQLCQNGDAESAKRLWGDMVSKGIEPHANL 650

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
              LI GLCK GR   G +    M EN I   +A +  L E L+
Sbjct: 651 REHLISGLCKQGRATEGMDRLMGMLENKIKPKKAAFEDLAECLI 694


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 128/592 (21%), Positives = 236/592 (39%), Gaps = 112/592 (18%)

Query: 131 NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS---------- 180
           +P L  +FF WA +Q GY H  A Y+ALA  L   +  R A+++   +            
Sbjct: 113 SPELCVRFFLWAERQVGYSHTGACYDALAEILGFEDPARTAERLLREIGEDDREVLRRLL 172

Query: 181 ---------QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK 231
                     G   E LE L +++    +P    Y A+++VLA+   ++   RV +EM  
Sbjct: 173 NVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSA 232

Query: 232 DLVEADVMAYVTLIMGLCKGGR----------------------VVRG---HELFRE--- 263
                D          LCK GR                      ++ G     LF E   
Sbjct: 233 SGFCMDRSTIGYFAQALCKVGRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMS 292

Query: 264 ----MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
               M+ N  + +   Y  L+ G + + + G    ++  ++  G   +  ++NS++ G C
Sbjct: 293 FLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYC 352

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL----------------------------- 350
               +  AYKLF         P +   N  +                             
Sbjct: 353 NAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAAS 412

Query: 351 ------------VCCAEMGRMDNFFKLLAQMEKLKF-SVAADLEKFFEFLVGKEERIMMA 397
                        C   +G+ +  F++L +M +  F    +   K   FL  + +++  +
Sbjct: 413 CVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLC-QAKKVEKS 471

Query: 398 LDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
             +F+E+K  G +  V  Y IL+ +  + G +++A   F +MR +    N ++++  +  
Sbjct: 472 FLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHA 531

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL---GNVA 513
           +++S  +++A +  +++++ +  P+   Y+ L  GLCK GEI  A  +    +   GNV 
Sbjct: 532 YLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVE 591

Query: 514 S------------GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           S             P    Y   I  +C++ +     E+L+ M   GC PN+++  A+I 
Sbjct: 592 SDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALID 651

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
           G CK G ++ A++VF  + +   L   +T  Y  ++    K    DL +  L
Sbjct: 652 GFCKIGKIDNAQEVFLRMTKCGYLPSVHT--YTSLIDRMFKDGRLDLAMKVL 701



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 182/405 (44%), Gaps = 29/405 (7%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  +  +IL++M R    PD   YT +I  L   + ++    +++EMK+  V  DV  Y
Sbjct: 431 GKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTY 490

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI   CK G + +    F EM+  G   +   Y  L+   +   ++ +A D+   +VD
Sbjct: 491 TILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVD 550

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFE--VTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +    +   Y+++I GLC+  +  KA +++E  +    ++  DF                
Sbjct: 551 AACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDF---------------- 594

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YN 416
             +F+          ++A ++  +   + G  K +++  A ++ + +   G     I Y+
Sbjct: 595 --YFE-----GNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYD 647

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+    +IG++  A  +F +M       +  +++  I    + G +  A +  ++++  
Sbjct: 648 ALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLND 707

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
           S  P+V  Y  +  GL K+GEI+ A+ L+   +      P    Y   I  + ++G+A+ 
Sbjct: 708 SCNPNVVTYTAMIDGLSKVGEIEKALNLL-SLMEEKGCSPNVVTYTALIDGLGKTGKADA 766

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            +++  +M  +GC PN V    +I+  C  G L+EA  +   ++ 
Sbjct: 767 SLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKH 811



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 114/523 (21%), Positives = 213/523 (40%), Gaps = 55/523 (10%)

Query: 91  FITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKH 150
            ++   +K QF W           +R+   ++ E      NP+L +   H       Y +
Sbjct: 312 LLSGFLKKKQFGW----------CKRIINMMMTE--GCNPNPSLFNSLVHGYCNAGDYAY 359

Query: 151 NFASYNALAYCLS-----RNNLFRAA----DQVPELMDSQGRIAEMLEILEKMRRNL--- 198
            +  +N +  C S       N+F  +    +++P         AE+L+++EK+   +   
Sbjct: 360 AYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPN--------AELLDLVEKVYEEMLAA 411

Query: 199 -CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
            C  +        R L      +   ++ +EM +     D   Y  +I  LC+  +V + 
Sbjct: 412 SCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKS 471

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
             LF+EMK  G+  D   Y +LI+     G + +A     ++   G   ++  Y +++  
Sbjct: 472 FLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHA 531

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
             + KQ  +A+ +F   V     P+  T + L+    + G +    ++  ++     +V 
Sbjct: 532 YLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVE 591

Query: 378 ADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGK 437
           +D   +FE   G +   +               +V  Y  L+  L +  +V  A  L   
Sbjct: 592 SDF--YFE---GNDTCTIA-------------PNVVTYGALIDGLCKAQKVSDAHELLDA 633

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M     E N + +   I    + G I  A E   ++ +   +PSV  Y  L   + K G 
Sbjct: 634 MLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGR 693

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           +D AM ++ + L N +  P    Y   I  + + GE EK + +L+ M ++GC PN V  +
Sbjct: 694 LDLAMKVLSEML-NDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYT 752

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           A+I G+ K G  + + K+F  +  +      N + Y  +LI H
Sbjct: 753 ALIDGLGKTGKADASLKLFKQMNSKG--CAPNYVTY-RVLINH 792



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 177/411 (43%), Gaps = 31/411 (7%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM--KKDLVEAD--------- 237
           +I  +M    C P+   Y+A+I  L     +     V+E++      VE+D         
Sbjct: 543 DIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTC 602

Query: 238 -----VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
                V+ Y  LI GLCK  +V   HEL   M   G   ++ +Y  LI+G    GK+  A
Sbjct: 603 TIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNA 662

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
            ++   +   GY   +  Y S+I  + +  + D A K+    + D   P+  T   ++  
Sbjct: 663 QEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDG 722

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-S 411
            +++G ++    LL+ ME+   S            +GK  +   +L +F+++  KG + +
Sbjct: 723 LSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPN 782

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH----VESGDILEAC 467
              Y +L+      G + +A  L  +M+  +   +   +  A+Q      + S  +LE  
Sbjct: 783 YVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEM 842

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALT 524
           E H        VP    Y  L     K G ++ A+ L ++ L  V+S     +   YA  
Sbjct: 843 ESHET------VPIAPVYGMLIDSFSKAGRLETALELHKE-LVEVSSSLNMTSTGMYASL 895

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           I  +C + + E+   +  EMT++G  P+ ++  +++ G+ +    +EA ++
Sbjct: 896 IQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQL 946



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 155/337 (45%), Gaps = 9/337 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++++  E+L+ M    C+P+   Y A+I        +D    V+  M K      V  Y 
Sbjct: 623 KVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYT 682

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +LI  + K GR+    ++  EM  +    +   Y  +I+GL   G++ KA +LL  + + 
Sbjct: 683 SLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEK 742

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   ++  Y ++I GL +  + D + KLF+       AP++ T   L+  C   G +D  
Sbjct: 743 GCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEA 802

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSV-PIYNILMGA 421
             LL +M+   +     L+ +   + G  ++ + +L + EE++      + P+Y +L+ +
Sbjct: 803 HLLLDEMKHTHWP--KHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVYGMLIDS 860

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLS---FSIAIQCHVESGDILEACECHNKIIEMSQ 478
             + G ++ AL L  ++  ++  +N  S   ++  IQ    +  + EA   + ++     
Sbjct: 861 FSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGI 920

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
           VP +  +  L KGL ++ + D A+ L   C G    G
Sbjct: 921 VPDLIVFVSLVKGLIEVNKWDEALQL---CYGRCHEG 954



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 125/275 (45%), Gaps = 8/275 (2%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           M   GR+   +++L +M  + C P+V  YTAMI  L+    ++  L +   M++     +
Sbjct: 688 MFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPN 747

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ Y  LI GL K G+     +LF++M   G   +   Y VLI      G + +A  LL 
Sbjct: 748 VVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLD 807

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           ++  + +   L  Y+  + G    K+F  +  L E     +  P       L+   ++ G
Sbjct: 808 EMKHTHWPKHLQGYHCAVQGF--SKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAG 865

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK---EERIMMALDVFEELKGKG-YSSVP 413
           R++   +L  ++ ++  S+       +  L+       ++  A  ++ E+  KG    + 
Sbjct: 866 RLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLI 925

Query: 414 IYNILMGALLEIGEVKKALYL-FGKMR-GLNLEVN 446
           ++  L+  L+E+ +  +AL L +G+   G+N + N
Sbjct: 926 VFVSLVKGLIEVNKWDEALQLCYGRCHEGVNWQDN 960


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 173/392 (44%), Gaps = 37/392 (9%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++ E+MRR  C  +   Y  MI  L     ++      EEM    +  D   Y  L+ GL
Sbjct: 266 KVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGL 325

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           CKGGR+     L  EM  +G+  +  +Y  L++G + EGK  +A D+L +++ +G + + 
Sbjct: 326 CKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNK 385

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
            +Y+++I GLC++ Q  +A KL    ++    PD  T +PL+      G   ++      
Sbjct: 386 IMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLM-----QGHFQHY------ 434

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGE 427
                     D +  FE L               E++  G   +   Y I++  L + GE
Sbjct: 435 ----------DKDGAFELL--------------NEMRNSGILPNAYTYGIMINGLCQNGE 470

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
            K+A  L  +M    L+ N+  ++  I  H + G I  ACE    + + + +P +  YN 
Sbjct: 471 SKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNS 530

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L KGL  +G I+ A       +      P EF Y+  I   C++   EK  ++L +M   
Sbjct: 531 LIKGLSTVGRIEEAEEYYAQ-VQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNS 589

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           G  PN    + ++ G  K    E+   +  ++
Sbjct: 590 GLKPNADTYTDLLEGYFKSNDHEKVSSILQSM 621



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 111/463 (23%), Positives = 199/463 (42%), Gaps = 45/463 (9%)

Query: 165 NNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLR 224
           +NL R   ++ +L    GR +++L  + K+     +PD F Y  +++      + D    
Sbjct: 389 DNLIRGLCKIGQL----GRASKLLNEMIKVGH---RPDTFTYHPLMQGHFQHYDKDGAFE 441

Query: 225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
           +  EM+   +  +   Y  +I GLC+ G       L  EM   G+  +  +Y  LI G  
Sbjct: 442 LLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHS 501

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
            EG +  AC+ L+++  +    DL  YNS+I GL  V + ++A + +    +  L PD  
Sbjct: 502 KEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEF 561

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD-----LEKFF------------EFL 387
           T + L+    +   ++   +LL QM        AD     LE +F            + +
Sbjct: 562 TYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSM 621

Query: 388 VG------------------KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEV 428
           +G                  + E + +A  V  E++  G    + IY+ L+  L ++ ++
Sbjct: 622 LGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADM 681

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
           +KA+ L  +M    LE   + ++  I     SGDI  A    + I+    +P+   Y  L
Sbjct: 682 EKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTAL 741

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
             G CK G+I  A  L +D L +    P  F Y +       + + E+ + +  EM   G
Sbjct: 742 IDGNCKNGDITDAFDLYKDML-DRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRG 800

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
                +  S ++ G CK G L+E  K+   + +R+++  A T+
Sbjct: 801 YAHVSLF-STLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTV 842



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 178/406 (43%), Gaps = 7/406 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G   E   +LE+M     KP+ F Y  +I   + E ++       E M K  V  D+  
Sbjct: 468 NGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFC 527

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI GL   GR+    E + ++++ G++ D   Y  LI G      + KA  LL+ ++
Sbjct: 528 YNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQML 587

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +SG + +   Y  ++ G  +    +K   + +  +     PD      ++   +    M+
Sbjct: 588 NSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENME 647

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
             F +L ++E  K  +  DL  +   + G  K   +  A+ + +E+  +G    +  YN 
Sbjct: 648 VAFMVLTEVE--KNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNA 705

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+      G++ +A  +F  +    L  N ++++  I  + ++GDI +A + +  +++  
Sbjct: 706 LIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRG 765

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P    YN L  G     +++ A+ L  +      +  + F  +  +   C+ G  ++ 
Sbjct: 766 IAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYAHVSLF--STLVRGFCKRGRLQET 823

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            ++L+ M      PN      +I+   K G L EA +VF  L+++K
Sbjct: 824 EKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVFAELQQKK 869



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/445 (22%), Positives = 194/445 (43%), Gaps = 41/445 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E   +L++M  +  KP+V  Y  ++     E        +  EM    V+ + + Y
Sbjct: 329 GRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMY 388

Query: 242 VTLIMGLCKGGRVVR-------------------------GH----------ELFREMKE 266
             LI GLCK G++ R                         GH          EL  EM+ 
Sbjct: 389 DNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRN 448

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           +GIL +   YG++I GL   G+  +A +LL++++  G + +  +Y  +I G  +      
Sbjct: 449 SGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISL 508

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A +  E   + ++ PD    N L+   + +GR++   +  AQ++K    +  D   +   
Sbjct: 509 ACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKR--GLVPDEFTYSGL 566

Query: 387 LVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           + G  K   +  A  + +++   G   +   Y  L+    +  + +K   +   M G   
Sbjct: 567 IHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGD 626

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
           + ++  + I I+    S ++  A     ++ +   VP +  Y+ L  GLCK+ +++ A+ 
Sbjct: 627 KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVG 686

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L+ D +      P    Y   I   CRSG+  +   V + +  +G  PN V  +A+I G 
Sbjct: 687 LL-DEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGN 745

Query: 564 CKHGTLEEARKVFTNLRERKLLTEA 588
           CK+G + +A  ++ ++ +R +  +A
Sbjct: 746 CKNGDITDAFDLYKDMLDRGIAPDA 770


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 108/443 (24%), Positives = 195/443 (44%), Gaps = 41/443 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG + E L +L  +    C+PDV +Y A+++ L   +       + EEM +     +++ 
Sbjct: 242 QGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVT 301

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + TLI  LC+ G   R HE+  +M E+G   D  +Y  +I+G+  EG +  A ++L  + 
Sbjct: 302 FNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMP 361

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + ++  YN+++ GLC  +++++  +L       D   D  T N L+    + G +D
Sbjct: 362 SYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVD 421

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG------------------------------- 389
              +LL QM  L+     D+  +   + G                               
Sbjct: 422 RVIELLEQM--LEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTI 479

Query: 390 ------KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLN 442
                   ER + A D+  ++  +G    PI +N L+  L + G V++A+ L  +M    
Sbjct: 480 VLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNG 539

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
              + +S+S  I    ++G   EA E  N ++     P+   Y+ +   L + G I+  +
Sbjct: 540 CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVI 599

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            +  D + +         Y   I  +C+ GE E+ IE L  M   GC PNE   + +I G
Sbjct: 600 QMF-DNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRG 658

Query: 563 MCKHGTLEEARKVFTNLRERKLL 585
           +   G ++EA+++ T L  +  L
Sbjct: 659 LASEGFVKEAQEMLTELCSKGAL 681



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/403 (21%), Positives = 175/403 (43%), Gaps = 41/403 (10%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++GRIA+ L +L++M R  C P    Y  ++                             
Sbjct: 171 ARGRIADALAVLDEMPRRGCAPIPPMYHVILE---------------------------- 202

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
                    C+GG       +  ++   G  +D     +++  +  +G V +A  LL+DL
Sbjct: 203 -------AACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDL 255

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   D+  YN+++ GLC  K++    +L E  V+    P+  T N L+      G  
Sbjct: 256 PSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLF 315

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           +   ++LAQM  ++     D+  +   + G  KE  + +A ++   +   G   +V  YN
Sbjct: 316 ERVHEVLAQM--VEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYN 373

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  L      ++   L  +M   +  ++ ++F+I +    ++G +    E   +++E 
Sbjct: 374 TLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEH 433

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
             +P V  Y  +  G CK G ID A+ML++  +      P    Y + +  +C +     
Sbjct: 434 GCMPDVITYTTVINGFCKEGLIDEAVMLLKS-MTACGCKPNTISYTIVLKGLCSAERWVD 492

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             +++++M Q+GCP N +  + +I+ +CK G +E+A ++   +
Sbjct: 493 AEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQM 535



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 98/445 (22%), Positives = 207/445 (46%), Gaps = 22/445 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G     + +LE +    C  DV     ++  +  + ++D  L +  ++     E DV++Y
Sbjct: 208 GGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSY 267

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++ GLC   R     EL  EM       +   +  LI  L   G   +  ++L  +V+
Sbjct: 268 NAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVE 327

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRM 359
            G   D+ +Y +II G+C+    + A+++        L P+    N LL  +C AE  R 
Sbjct: 328 HGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAE--RW 385

Query: 360 DNFFKLLAQM-------EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSS 411
           +   +LLA+M       + + F++  D    F    G  +R+   +++ E++   G    
Sbjct: 386 EETEELLAEMFDKDCPLDDVTFNILVD----FFCQNGLVDRV---IELLEQMLEHGCMPD 438

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           V  Y  ++    + G + +A+ L   M     + N++S++I ++    +   ++A +  +
Sbjct: 439 VITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMS 498

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           ++I+     +   +N L   LCK G ++ A+ L++  L N  S P    Y+  I  + ++
Sbjct: 499 QMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCS-PDLISYSTVIDGLGKA 557

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           G+ ++ +E+LN M  +G  PN +I S+I S + + G + +  ++F N+++  + ++A  +
Sbjct: 558 GKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDA--V 615

Query: 592 VYDEILIEHMKKKTADLVLSGLKFF 616
           +Y+ ++    K+   +  +  L + 
Sbjct: 616 LYNAVISSLCKRGETERAIEFLAYM 640



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 126/290 (43%), Gaps = 1/290 (0%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S  R  E  E+L +M    C  D   +  ++        +D  + + E+M +     DV+
Sbjct: 381 SAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVI 440

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I G CK G +     L + M   G   +   Y ++++GL    +   A DL+  +
Sbjct: 441 TYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQM 500

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G   +   +N++I  LC+    ++A +L +  + +  +PD  + + ++    + G+ 
Sbjct: 501 IQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKT 560

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNIL 418
           D   +LL  M     S    +       + +E RI   + +F+ ++     S   +YN +
Sbjct: 561 DEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAV 620

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           + +L + GE ++A+     M       N  +++I I+     G + EA E
Sbjct: 621 ISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQE 670



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 124/290 (42%), Gaps = 46/290 (15%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           YN+++ G CR  Q + A +L        + P+  T  P++      GR+ +         
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCARGRIAD--------- 177

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSV-PIYNILMGALLEIGEVK 429
                                     AL V +E+  +G + + P+Y++++ A    G  +
Sbjct: 178 --------------------------ALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFR 211

Query: 430 KALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
            A+ +   +  RG  L+V + +  +   C  + G + EA      +      P V +YN 
Sbjct: 212 SAVRVLEDLHARGCALDVGNCNLVLNAIC--DQGSVDEALHLLRDLPSFGCEPDVVSYNA 269

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           + KGLC          L+ + +  +A  P    +   I ++CR+G  E++ EVL +M + 
Sbjct: 270 VLKGLCMAKRWGCVQELMEE-MVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEH 328

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           GC P+  + + II G+CK G LE A ++   +    L  + N + Y+ +L
Sbjct: 329 GCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGL--KPNVVCYNTLL 376


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 133/615 (21%), Positives = 255/615 (41%), Gaps = 82/615 (13%)

Query: 1   MPPQTPQRPPKPY---FFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQ 57
           +P  +PQ PP PY    F+ H +P  +         S   S     S S    + P   +
Sbjct: 16  LPFHSPQ-PPCPYNSGIFHPHLRPPPHA--------SKLGSTSTVGSNSRWVFTTPIPPE 66

Query: 58  KWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSK-LRR 116
             +P Y  +    +P   P  +  Q     I + +  +           + +  SK L +
Sbjct: 67  WVEPLYDLSDLASNPQPQPSPWVNQ-----ILKLLDGSVNMES-----NLDSYCSKFLIK 116

Query: 117 VTPDLVAEVLK---VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFR---- 169
           ++P+ VA VLK   +   P +A +FF WAGKQK Y H    Y +L   LS ++ F     
Sbjct: 117 LSPNFVAFVLKSDAIRGKPDIAFRFFWWAGKQKNYIHKIECYVSLIDVLSLSSDFDRVRC 176

Query: 170 ---------------AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
                          AA+ +     + G + E+L +  +M+ +  +P ++ +  ++  L 
Sbjct: 177 IFGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLV 236

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
               +++  RV+E M+   +  DV++Y T+I G CK G   +  E F +M++  +  D+ 
Sbjct: 237 NSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKI 296

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
            Y  LI+    EG       L +++ + G       Y+ +IGGLC+  +  +   +FE  
Sbjct: 297 TYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENM 356

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI 394
            +     + +    L+         D +                          GK   +
Sbjct: 357 NKKGCKANVAIYTALI---------DAY--------------------------GKNGNV 381

Query: 395 MMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
             A+++FE +KG+G+    + Y +++  L + G + +A+  F   +   + VN++ +S  
Sbjct: 382 NEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSL 441

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
           I    ++G + EA +   +++E         YN L   L K G+++ A++L +  +    
Sbjct: 442 IDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKR-MEKEG 500

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
              T + Y + I  + +    E+ +++ + M  +G  P      A+  G+C  G +  A 
Sbjct: 501 CDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKVARAC 560

Query: 574 KVFTNLRERKLLTEA 588
           K+   L    ++ E 
Sbjct: 561 KILDELAPMGVIPET 575



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/452 (24%), Positives = 203/452 (44%), Gaps = 57/452 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD-------------------SQGRI 184
           K+ G + +  ++N L   L  +    +A++V E+M+                     G  
Sbjct: 217 KESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNT 276

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            + +E    M +   +PD   Y  +I+   +E N D+CL +++EM++  +E    AY  +
Sbjct: 277 KKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLV 336

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLCK GR V G  +F  M + G   + AIY  LI+     G V +A +L + +   G+
Sbjct: 337 IGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGF 396

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D   Y  I+ GLC+  + D+A + FE    +++A +    + L+    + GR+D    
Sbjct: 397 EPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVD---- 452

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE 424
                         + EKFFE +V                +G    S   YN L+ AL +
Sbjct: 453 --------------EAEKFFEEMVE---------------RGCPQDSY-CYNALIDALAK 482

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G++++AL LF +M     +    +++I I    +     EA +  + +I+    P+ A+
Sbjct: 483 SGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTAS 542

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP-TEFKYALTILHVCRSGEAEKIIEVLNE 543
           +  L+ GLC  G++  A  ++ D L  +   P T F+  + +L  C++G  E+  ++ + 
Sbjct: 543 FRALSVGLCLSGKVARACKIL-DELAPMGVIPETAFEDMINVL--CKAGRTEQACKLADG 599

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           +   G      + + +I+ + K G  + A K+
Sbjct: 600 IVDRGREVPGRVRTILINALRKAGNADLAMKL 631



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 18/201 (8%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKM 194
           A KFF     ++G   +   YNAL   L+++                G++ E L + ++M
Sbjct: 454 AEKFFE-EMVERGCPQDSYCYNALIDALAKS----------------GKMEEALVLFKRM 496

Query: 195 RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
            +  C   V+ YT +I  L  E   +  L++W+ M    +     ++  L +GLC  G+V
Sbjct: 497 EKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKV 556

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
            R  ++  E+   G++ + A +  +I  L   G+  +AC L   +VD G      +   +
Sbjct: 557 ARACKILDELAPMGVIPETA-FEDMINVLCKAGRTEQACKLADGIVDRGREVPGRVRTIL 615

Query: 315 IGGLCRVKQFDKAYKLFEVTV 335
           I  L +    D A KL    +
Sbjct: 616 INALRKAGNADLAMKLMHSKI 636


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 200/434 (46%), Gaps = 8/434 (1%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           V ++M   G+ A  +E+L KM     K D   Y+ +I  L  + +LD    ++ EM+   
Sbjct: 218 VLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
            +AD++ Y TLI G C  GR   G +L R+M +  I  D   +  LI+  V EGK+ +A 
Sbjct: 278 FKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAE 337

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           +L K+++  G   D   Y S+I G C+  Q DKA  + ++ V     P+  T N L+   
Sbjct: 338 ELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGY 397

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGYS- 410
            +   +D+  +L  +M  L+  V AD   +   + G  E  ++ +A ++F+E+  +    
Sbjct: 398 CKANLIDDGLELFRKMS-LR-GVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRP 455

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            +  Y IL+  L + GE +KAL +F K+    +E++   ++I I     +  + +A +  
Sbjct: 456 DIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 515

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
             +      P V  YN +  GLCK G +  A +L R  +      P    Y + I     
Sbjct: 516 CSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRK-MEEDGHSPNGCTYNILIRAHLG 574

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT-NLRERKLLTEAN 589
            G+A K  +++ E+ + G   +       +S + +         VFT     R    E N
Sbjct: 575 EGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEEN 634

Query: 590 TIVYDE-ILIEHMK 602
             VYD   L ++MK
Sbjct: 635 ASVYDAPTLFKNMK 648



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 123/570 (21%), Positives = 251/570 (44%), Gaps = 51/570 (8%)

Query: 27  TVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLS 86
           + YG +FS+    +   S  E  +S   ++++ D   L  + T+S P  P+     R  S
Sbjct: 22  SCYGRVFSSVSDGKGKVSYRERLRSGIVDIKEDDAVDLFQEMTRSRPR-PRLIDFSRLFS 80

Query: 87  PIAR-----FITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHW 141
            +AR      + D  ++ + +     +  LS    +  +      K+       S  F  
Sbjct: 81  VVARTKQYDLVLDLCKQMELKGIAHNLYTLS----IMINCCCRCRKL-------SLAFSA 129

Query: 142 AGK--QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRN 197
            GK  + GY+ +  +++ L    CL                  +GR++E LE++++M   
Sbjct: 130 MGKIIKLGYEPDTVTFSTLINGLCL------------------EGRVSEALELVDRMVEM 171

Query: 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
             KP +    A++  L     +   + + + M +   + + + Y  ++  +CK G+    
Sbjct: 172 GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
            EL R+M+E  I +D   Y ++I+GL  +G +  A +L  ++   G++AD+ IY ++I G
Sbjct: 232 MELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRG 291

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
            C   ++D   KL    ++  + PD    + L+ C  + G++    +L  +M  ++  ++
Sbjct: 292 FCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEM--IQRGIS 349

Query: 378 ADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL 434
            D   +   + G  KE ++  A  + + +  KG   ++  +NIL+    +   +   L L
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLEL 409

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           F KM    +  ++++++  IQ   E G +  A E   +++     P + +Y  L  GLC 
Sbjct: 410 FRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCD 469

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFK---YALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
            GE + A+ +       +     E     Y + I  +C + + +   ++   +  +G  P
Sbjct: 470 NGEPEKALEIFE----KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKP 525

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           +    + +I G+CK G+L EA  +F  + E
Sbjct: 526 DVKTYNIMIGGLCKKGSLSEADLLFRKMEE 555



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 190/402 (47%), Gaps = 6/402 (1%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + +++ ++M R+  +P +  ++ +  V+A  +  D  L + ++M+   +  ++     +I
Sbjct: 55  DAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMI 114

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              C+  ++        ++ + G   D   +  LI GL  EG+V +A +L+  +V+ G++
Sbjct: 115 NCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK 174

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
             L   N+++ GLC   +   A  L +  V+    P+  T  P+L    + G+     +L
Sbjct: 175 PTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMEL 234

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGAL 422
           L +ME+ K  +  D  K+   + G  K+  +  A ++F E++ KG+ + + IY  L+   
Sbjct: 235 LRKMEERK--IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGF 292

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
              G       L   M    +  + ++FS  I C V+ G + EA E H ++I+    P  
Sbjct: 293 CYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDT 352

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             Y  L  G CK  ++D A  ++ D + +   GP    + + I   C++   +  +E+  
Sbjct: 353 VTYTSLIDGFCKENQLDKANHML-DLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFR 411

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           +M+  G   + V  + +I G C+ G LE A+++F  +  R++
Sbjct: 412 KMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRV 453



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 116/529 (21%), Positives = 213/529 (40%), Gaps = 67/529 (12%)

Query: 88  IARFITDAFRKNQFQWGP---------QVVTELSKLRR-----VTPDLVAEVLKVEN--- 130
           I R +   F+ N+  +GP         Q    +  LR+     +  D V   + ++    
Sbjct: 200 IDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCK 259

Query: 131 NPTLASKFFHWAGKQ-KGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEM 187
           + +L + F  +   + KG+K +   Y  L   +C +                  GR  + 
Sbjct: 260 DGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYA------------------GRWDDG 301

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            ++L  M +    PDV A++A+I     E  L     + +EM +  +  D + Y +LI G
Sbjct: 302 AKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDG 361

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            CK  ++ + + +   M   G   +   + +LI G      +    +L + +   G  AD
Sbjct: 362 FCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVAD 421

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
              YN++I G C + + + A +LF+  V   + PD  +   LL    + G  +   ++  
Sbjct: 422 TVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFE 481

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
           ++EK K  +   +       +    ++  A D+F  L  KG    V  YNI++G L + G
Sbjct: 482 KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKG 541

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI------------- 473
            + +A  LF KM       N  +++I I+ H+  GD  ++ +   +I             
Sbjct: 542 SLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLR 601

Query: 474 ---------IEMSQVPSVAAYNCLTKGLC--KIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
                    ++    P V  +  L +  C  +   +  A  L ++ +  +   P    Y 
Sbjct: 602 FALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKN-MKAMGYKPNVVTYN 660

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK---HGT 568
             I  +       ++  VL++M + GC PN V  S  ISG+CK   HG+
Sbjct: 661 TVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGS 709



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 135/319 (42%), Gaps = 8/319 (2%)

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A DL +++  S  R  L  ++ +   + R KQ+D    L +      +A +  T++ ++ 
Sbjct: 56  AVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMIN 115

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY 409
           CC    ++   F  + ++ KL +    D   F   + G   E R+  AL++ + +   G+
Sbjct: 116 CCCRCRKLSLAFSAMGKIIKLGYE--PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173

Query: 410 SSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
               I  N L+  L   G+V  A+ L  +M     + N +++   ++   +SG    A E
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAME 233

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
              K+ E         Y+ +  GLCK G +D A  L  + +           Y   I   
Sbjct: 234 LLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE-MEIKGFKADIIIYTTLIRGF 292

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C +G  +   ++L +M +    P+ V  SA+I    K G L EA ++   + +R +    
Sbjct: 293 CYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGI--SP 350

Query: 589 NTIVYDEILIEHMKKKTAD 607
           +T+ Y  ++    K+   D
Sbjct: 351 DTVTYTSLIDGFCKENQLD 369


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 184/397 (46%), Gaps = 7/397 (1%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++LE+M     KP+ F Y  +I     E N+     ++++M K  V  D+  Y +LI GL
Sbjct: 453 DLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGL 512

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
            K GRV    + F +M+E G+L +   Y  LI G +  G +  A  L++ ++D+G + + 
Sbjct: 513 SKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPND 572

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
            IY  ++    +    +K    F+  +   +  D      L+   +  G M+  F++L+ 
Sbjct: 573 VIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSG 632

Query: 369 MEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
           +E  K     D+  +   + G  K      A  + +E+  KG   ++  YN L+  L + 
Sbjct: 633 IE--KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKS 690

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G++  A  +F  +    L  N ++++  I    + GDI  A   +N+++     P    Y
Sbjct: 691 GDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVY 750

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           + LT G    G+++ AM L+ +      +  + F   +     C+ G+ ++ +++L+ + 
Sbjct: 751 SVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVD--GFCKRGKMQETLKLLHVIM 808

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             G  PN +    IISG+ + G L E   +F  L+++
Sbjct: 809 GRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQK 845



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/478 (24%), Positives = 213/478 (44%), Gaps = 31/478 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           +++G   N  +YN L   L R+     A    + M+  G                   R 
Sbjct: 249 RERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRS 308

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E   +L++M     KP+V  Y  +I     E N D   ++ +EM    V+ + + Y  L
Sbjct: 309 NEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNL 368

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + GLCK G++ R   L ++M  +    D   Y ++IEG         A  LL ++ ++G 
Sbjct: 369 VRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGI 428

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  Y+ +I GLC+  + +KA  L E      L P+     PL+      G +    +
Sbjct: 429 SPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACE 488

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IYNILM 419
           +  +M K+  +V  DL  +   + G  K  R+  +   F +++ +G   +P    Y+ L+
Sbjct: 489 IFDKMTKV--NVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGL--LPNEFTYSGLI 544

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
              L+ G+++ A  L  +M    L+ N + +   ++ + +S DI +       +++   +
Sbjct: 545 HGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVM 604

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
                Y  L   L   G ++AA  ++     N  S P    Y+  I  +C++ + EK   
Sbjct: 605 LDNRIYGILIHNLSSSGNMEAAFRVLSGIEKN-GSVPDVHVYSSLISGLCKTADREKAFG 663

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +L+EM+++G  PN V  +A+I G+CK G +  AR VF ++  + L+   N + Y  ++
Sbjct: 664 ILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLV--PNCVTYTSLI 719



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 196/410 (47%), Gaps = 23/410 (5%)

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
           R  D   +V  EM++     + + Y  LI GLC+ G V       ++M++ G++ D   Y
Sbjct: 236 REFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTY 295

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
           G LI GL    +  +A  LL ++  +  + ++ +Y ++I G  R    D+A+K+ +  V 
Sbjct: 296 GALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVA 355

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERI 394
             + P+  T + L+    +MG+MD    LL QM  ++ S   D   +   + G  +    
Sbjct: 356 AGVQPNKITYDNLVRGLCKMGQMDRASLLLKQM--VRDSHRPDTITYNLIIEGHFRHHSK 413

Query: 395 MMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
             A  +  E++  G S +V  Y+I++  L + GE +KA  L  +M    L+ N+  ++  
Sbjct: 414 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 473

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA-----AMMLVRDC 508
           I  +   G++  ACE  +K+ +++ +P +  YN L  GL K+G ++      A M  R  
Sbjct: 474 ISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGL 533

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
           L      P EF Y+  I    ++G+ E   +++  M   G  PN+VI   ++    K   
Sbjct: 534 L------PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDD 587

Query: 569 LEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK----KTADLVLSGLK 614
           +E+    F ++ ++ ++ +    +Y  ILI ++      + A  VLSG++
Sbjct: 588 IEKVSSTFKSMLDQGVMLDNR--IYG-ILIHNLSSSGNMEAAFRVLSGIE 634



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 128/572 (22%), Positives = 228/572 (39%), Gaps = 103/572 (18%)

Query: 89  ARFITDAFRKNQFQWGPQVVTELSKLRRVTPDL---------VAEVLKVENNPTLASKFF 139
           A  I+   R+       ++  +++K+  V PDL         +++V +VE     ++K+F
Sbjct: 471 APLISGYCREGNVSLACEIFDKMTKVN-VLPDLYCYNSLIFGLSKVGRVEE----STKYF 525

Query: 140 HWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG----------------- 182
               +++G   N  +Y+ L +   +N    +A+Q+ + M   G                 
Sbjct: 526 AQM-QERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFK 584

Query: 183 --RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
              I ++    + M       D   Y  +I  L++  N++A  RV   ++K+    DV  
Sbjct: 585 SDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHV 644

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI GLCK     +   +  EM + G+  +   Y  LI+GL   G +  A ++   ++
Sbjct: 645 YSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSIL 704

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   +   Y S+I G C+V     A+ L+   +   + PD    + L   C       
Sbjct: 705 AKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC------- 757

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
                         S A DLE+              A+ + EE+  +G++S+  +N L+ 
Sbjct: 758 --------------SSAGDLEQ--------------AMFLIEEMFLRGHASISSFNNLVD 789

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G++++ L L   + G  L  N+L+    I    E+G +    E H   +E+ Q  
Sbjct: 790 GFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKL---SEVHTIFVELQQKT 846

Query: 481 SVAA---------------------YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           S +A                      + + +  CK G +D A+ML RD +    S P   
Sbjct: 847 SESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALML-RDVI-VAKSAPMGC 904

Query: 520 KYALTIL-HVCRSGEAEKIIEVLNEMTQEG-CPPNEVICSAIISGMCKHGTLEEARKVFT 577
              L I+ ++CR G+  + + +L EM + G   P  V    I      H  L +   VFT
Sbjct: 905 SSYLAIVDNLCRKGKLSEALNLLKEMDKRGNLQPTLVALLGIFWFRRHHHILNKV--VFT 962

Query: 578 NLRERKLLTE-ANTIVYDEILIEHMKKKTADL 608
                 +    A T+ + + L   MKKK   +
Sbjct: 963 VFAPSLMFASLAKTVTFSDSL---MKKKRGQM 991



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 155/346 (44%), Gaps = 25/346 (7%)

Query: 280 IEGLVGEGKVGKACD-------------LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           +EG    G+ G A +             +L ++ + G   +   YN +I GLCR    ++
Sbjct: 216 VEGSAARGRHGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEE 275

Query: 327 AYKLFEVTVQD-DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME--KLKFSVAADLEKF 383
           A+  F+  ++D  L PD  T   L+    +  R +    LL +M   +LK +V       
Sbjct: 276 AFG-FKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLI 334

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLN 442
             F+  +E     A  + +E+   G     I Y+ L+  L ++G++ +A  L  +M   +
Sbjct: 335 DGFM--REGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 392

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
              +++++++ I+ H       +A    +++      P+V  Y+ +  GLC+ GE + A 
Sbjct: 393 HRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKAS 452

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            L+ + +      P  F YA  I   CR G      E+ ++MT+    P+    +++I G
Sbjct: 453 DLLEE-MTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFG 511

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADL 608
           + K G +EE+ K F  ++ER LL   N   Y  ++  H   K  DL
Sbjct: 512 LSKVGRVEESTKYFAQMQERGLL--PNEFTYSGLI--HGYLKNGDL 553



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 6/202 (2%)

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           A  ++ E   A  +  +MR     +N++++++ I     SG + EA      + +   VP
Sbjct: 231 AYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVP 290

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
               Y  L  GLCK    + A  L+ D +      P    YA  I    R G A++  ++
Sbjct: 291 DGFTYGALINGLCKSRRSNEAKALL-DEMSCAELKPNVVVYANLIDGFMREGNADEAFKM 349

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL--- 597
           + EM   G  PN++    ++ G+CK G ++ A  +   +         +TI Y+ I+   
Sbjct: 350 IKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS--HRPDTITYNLIIEGH 407

Query: 598 IEHMKKKTADLVLSGLKFFGLE 619
             H  KK A  +LS ++  G+ 
Sbjct: 408 FRHHSKKDAFRLLSEMENAGIS 429


>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 847

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 121/480 (25%), Positives = 216/480 (45%), Gaps = 20/480 (4%)

Query: 103 WGPQVVTELSKL-RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           W  +   EL  L R + P  V  VL  + +   A +FF+WA +   Y+H+ + Y  +   
Sbjct: 196 WNRKFEGELRYLVRSLNPLQVCAVLLSQEDERNALRFFYWADRLWRYRHDSSVYLVMLEI 255

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221
           LS+  L + A ++             L ++ + R  LC P+ F +  M+    A R  DA
Sbjct: 256 LSKTKLCQGAKRI-------------LRLMTRRRIQLC-PEAFGFV-MVSYSRAGRLRDA 300

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
            ++V   M+K  VE ++    T I  L  G  + +       M   GI  +   Y  LI+
Sbjct: 301 -MKVLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMVLIGIAPNVVTYNCLIK 359

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD-LA 340
           G     +V +A +L+  +   G   D   Y +++G LCR K+ ++  +L +    D  L 
Sbjct: 360 GYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIRELIKKMQTDSKLL 419

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400
           PD  T N L+   ++ G  D   ++L + EKL+F V             KE +I  A ++
Sbjct: 420 PDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKEL 479

Query: 401 FEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
             E+  KG    V  Y  ++     IG++ +A  +  +M   + + N+++++  +     
Sbjct: 480 VSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCR 539

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           +G  LEA +  N   E    P+   Y+ +  GL + G+++ A  +VR+ +G     P   
Sbjct: 540 NGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGK-GFFPNPV 598

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           +  L +  +CR G+  +  ++L E   +GC  N V  + +I G C+   LE A  +  ++
Sbjct: 599 EINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDM 658



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 106/470 (22%), Positives = 194/470 (41%), Gaps = 69/470 (14%)

Query: 147 GYKHNFASYNAL--AYCLSRNNLFRAADQVPELMD---SQG------------------- 182
           G   N  +YN L   YC    N+ +  DQ  EL+D   S+G                   
Sbjct: 346 GIAPNVVTYNCLIKGYC----NVHQV-DQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDK 400

Query: 183 RIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           R+ E+ E+++KM+ +    PD   Y ++I++L+   + D  L + +E +K   + D + Y
Sbjct: 401 RLNEIRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEY 460

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++   CK G++ +  EL  EM   G   D   Y  +++G    GK+ +A  +++ +  
Sbjct: 461 SAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYK 520

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              + +   Y + + GLCR  +  +A K+  ++ ++   P+  T                
Sbjct: 521 HHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAIT---------------- 564

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
                       +SV           + +E ++  A DV  E+ GKG+   P+  N+L+ 
Sbjct: 565 ------------YSVVV-------HGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVH 605

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           +L   G+ ++A  L  +       VN ++F+  I    +  D+  A    + +   ++ P
Sbjct: 606 SLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHP 665

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
               Y  L   L K   I+ A  L    L      P+   Y   I   CR G  E ++++
Sbjct: 666 DTVTYTALIDALAKTDRIEEATELTMKMLRQ-GLVPSPVTYRSVIHQYCRKGRVEDLLKL 724

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           L +M  +     +   + +I  +CK G LEEA  +   +      T+A T
Sbjct: 725 LKKMLLKS--RFQTAYNLVIEKLCKFGYLEEANSLLGEVLRTASRTDAKT 772



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/327 (18%), Positives = 133/327 (40%), Gaps = 48/327 (14%)

Query: 312 NSIIGGLCRVKQFDKAY-KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD--NFFKLLAQ 368
           +S++   C++ Q   ++ + FE     +L     ++NPL VC   + + D  N  +    
Sbjct: 180 HSLVRDTCKLIQLSSSWNRKFE----GELRYLVRSLNPLQVCAVLLSQEDERNALRFFYW 235

Query: 369 MEKL-KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIG 426
            ++L ++   + +      ++ K +    A  +   +  +     P  +  +M +    G
Sbjct: 236 ADRLWRYRHDSSVYLVMLEILSKTKLCQGAKRILRLMTRRRIQLCPEAFGFVMVSYSRAG 295

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            ++ A+ +   M+   +E N    + AI   V   ++ +A     +++ +   P+V  YN
Sbjct: 296 RLRDAMKVLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMVLIGIAPNVVTYN 355

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS--------------- 531
           CL KG C + ++D AM L+ D + +    P +  Y   +  +CR                
Sbjct: 356 CLIKGYCNVHQVDQAMELI-DQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIRELIKKMQT 414

Query: 532 ---------------------GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
                                G  ++ +E+L E  +     ++V  SAI+   CK G ++
Sbjct: 415 DSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQ 474

Query: 571 EARKVFTNLRERKLLTEANTIVYDEIL 597
           +A+++ + +  +    + + + Y  +L
Sbjct: 475 KAKELVSEMFSKG--CDPDVVTYTSVL 499


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 109/503 (21%), Positives = 218/503 (43%), Gaps = 41/503 (8%)

Query: 120 DLVAEVLKVENNPTLA--SKFFHWAGKQK---------------GYKHNFASYNALAYCL 162
           DL  E+++    P+L   S+FF      K               G  HN  + N +  C 
Sbjct: 51  DLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMINCF 110

Query: 163 SRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
            R                  +      +L K+ +   +PD   +  +I  L  E  +   
Sbjct: 111 CR----------------CCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEA 154

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
           + +   M ++  + +V+ Y +++ G+CK G      +L R+M E  +  D   Y  +I+ 
Sbjct: 155 VVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDS 214

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           L  +G +  A  L K++   G ++ L  YNS++GGLC+  +++   +L +      + P+
Sbjct: 215 LCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPN 274

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDV 400
             T N L+    + G++    +L  +M  +   ++ +   +   + G   + R+  A ++
Sbjct: 275 VITFNVLIDVFVKEGKLQEANELYKEM--ITKGISPNTITYNSLMDGYCMQNRLSEANNM 332

Query: 401 FEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
            + +     S  +  +  L+    ++  V + + LF K+    L  N++++SI +Q   +
Sbjct: 333 LDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQ 392

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           SG +  A E   +++ +  +P V  Y  L  GLC  G+++ A+ +  D L          
Sbjct: 393 SGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFED-LQKSKMNLDIV 451

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            Y + I  +C+ G+ E    +   +  +G  PN +  + +ISG+CK G+L EA  +   +
Sbjct: 452 MYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM 511

Query: 580 RERKLLTEANTIVYDEILIEHMK 602
            E     E N   Y+ ++  H++
Sbjct: 512 EEDG--NEPNDCTYNTLIRAHLR 532



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 200/407 (49%), Gaps = 22/407 (5%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           + G + N  +YN++      N + ++ D            +  L++L KM     K DVF
Sbjct: 163 ENGCQPNVVTYNSIV-----NGICKSGDT-----------SLALDLLRKMDERNVKADVF 206

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y+ +I  L  +  +DA + +++EM+   +++ ++ Y +L+ GLCK G+   G +L ++M
Sbjct: 207 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDM 266

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
               I+ +   + VLI+  V EGK+ +A +L K+++  G   +   YNS++ G C   + 
Sbjct: 267 TSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRL 326

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +A  + ++ V+++ +PD  T   L+    ++ R+D   KL  ++ K    + A+   + 
Sbjct: 327 SEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKR--GLVANTVTYS 384

Query: 385 EFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
             + G  +  ++ +A ++F+E+   G    V  Y IL+  L + G+++KAL +F  ++  
Sbjct: 385 ILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKS 444

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            + ++ + ++I I+   + G + +A      +      P+V  Y  +  GLCK G +  A
Sbjct: 445 KMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEA 504

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
            +L+R  +    + P +  Y   I    R G+     +++ EM   G
Sbjct: 505 NILLRK-MEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 550



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/416 (21%), Positives = 194/416 (46%), Gaps = 10/416 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + +++E + ++ +M  N C+P+V  Y +++  +    +    L +  +M +  V+ADV  
Sbjct: 148 ESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFT 207

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I  LC+ G +     LF+EM+  GI      Y  L+ GL   GK      LLKD+ 
Sbjct: 208 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMT 267

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 ++  +N +I    +  +  +A +L++  +   ++P+  T N L+       R+ 
Sbjct: 268 SRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLS 327

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
               +L  M  ++ + + D+  F   + G  K +R+   + +F ++  +G  ++   Y+I
Sbjct: 328 EANNMLDLM--VRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSI 385

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+    + G+++ A  LF +M  L +  + +++ I +    ++G + +A E    + +  
Sbjct: 386 LVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 445

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYALTILHVCRSGEAE 535
               +  Y  + +G+CK G+++ A  L     C G     P    Y + I  +C+ G   
Sbjct: 446 MNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKG---VKPNVMTYTVMISGLCKKGSLS 502

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           +   +L +M ++G  PN+   + +I    + G L  + K+   ++      +A++I
Sbjct: 503 EANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSI 558



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 200/426 (46%), Gaps = 19/426 (4%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + +++ ++M R+   P +  ++     +A+ +  +  L   ++M+ + +  ++     +I
Sbjct: 48  DAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMI 107

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              C+  +    + +  ++ + G   D   +  LI GL  E KV +A  L+  +V++G +
Sbjct: 108 NCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQ 167

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            ++  YNSI+ G+C+      A  L     + ++  D  T + ++      G +D    L
Sbjct: 168 PNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISL 227

Query: 366 LAQMEK--LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKG----KGYSSVPIYNILM 419
             +ME   +K S+       +  LVG   +     D  + LK     K   +V  +N+L+
Sbjct: 228 FKEMETKGIKSSLVT-----YNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLI 282

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
              ++ G++++A  L+ +M    +  N+++++  +  +     + EA    + ++  +  
Sbjct: 283 DVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCS 342

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDC--LGNVASGPTEFKYALTILHVCRSGEAEKI 537
           P +  +  L KG CK+  +D  M L R     G VA+  T   Y++ +   C+SG+ E  
Sbjct: 343 PDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVT---YSILVQGFCQSGKLEIA 399

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            E+  EM   G  P+ +    ++ G+C +G LE+A ++F +L++ K+  +   IV   I+
Sbjct: 400 EELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLD---IVMYTII 456

Query: 598 IEHMKK 603
           IE M K
Sbjct: 457 IEGMCK 462



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/340 (20%), Positives = 143/340 (42%), Gaps = 55/340 (16%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS-------------------QGRI 184
           + KG K +  +YN+L   L +   +    Q+ + M S                   +G++
Sbjct: 232 ETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKL 291

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  E+ ++M      P+   Y +++     +  L     + + M ++    D++ + +L
Sbjct: 292 QEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSL 351

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK  RV  G +LFR++ + G++ +   Y +L++G    GK+  A +L +++V  G 
Sbjct: 352 IKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGV 411

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  Y  ++ GLC   + +KA ++FE   +  +  D      ++    + G++++   
Sbjct: 412 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVED--- 468

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
                                           A ++F  L  KG   +V  Y +++  L 
Sbjct: 469 --------------------------------AWNLFCSLPCKGVKPNVMTYTVMISGLC 496

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
           + G + +A  L  KM     E N  +++  I+ H+  GD+
Sbjct: 497 KKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDL 536



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/353 (20%), Positives = 148/353 (41%), Gaps = 11/353 (3%)

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           +GI   R  YG  +   + + K   A DL ++++ S     L  ++    G+   KQF+ 
Sbjct: 24  SGISDGRVCYGERLRSGIVDIKEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNL 83

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
                +    + +A +  T+N ++ C     +    + +L ++ KL +    D   F   
Sbjct: 84  VLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYE--PDTTTFNTL 141

Query: 387 LVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           + G   E ++  A+ +   +   G   +V  YN ++  + + G+   AL L  KM   N+
Sbjct: 142 INGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNV 201

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
           + +  ++S  I      G I  A     ++       S+  YN L  GLCK G+ +  + 
Sbjct: 202 KADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQ 261

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L++D + +    P    + + I    + G+ ++  E+  EM  +G  PN +  ++++ G 
Sbjct: 262 LLKD-MTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGY 320

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFF 616
           C    L EA  +   +         + + +  ++  + K K  D    G+K F
Sbjct: 321 CMQNRLSEANNMLDLMVRNN--CSPDIVTFTSLIKGYCKVKRVD---EGMKLF 368


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 122/587 (20%), Positives = 250/587 (42%), Gaps = 63/587 (10%)

Query: 49  HQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRK--NQFQWGPQ 106
           H SP     +    ++   KT +  + P    +Q  ++ +   + D++    N  ++ P 
Sbjct: 10  HASP----HRLTSLFILRTKTLTHITSPSC--VQSTVTRVCSLVYDSYHHHYNHARFSPP 63

Query: 107 VVTELSKLRRVTPDLVAEV---LKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLS 163
            +        +T D    +   L  +    +A  FF+WA     ++H    Y A A  L 
Sbjct: 64  TLHLDVDPNSLTHDQAVTIVASLASDAGSMVALSFFNWAIASSKFRHFTRLYIACAASLI 123

Query: 164 RNNLFRAADQVPELMDSQ----GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL 219
            N  F  A +V + M       GR+ E +E++ +M      P       +++++     +
Sbjct: 124 SNKNFEKAHEVMQCMVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLV 183

Query: 220 DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI---- 275
           +    +++EM    V+ + ++Y  +++G CK G V+        M E G ++D A     
Sbjct: 184 EYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLI 243

Query: 276 -------------------------------YGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
                                          +  +IEGL   G V +A ++L+++V  G+
Sbjct: 244 VREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGW 303

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
           + ++  + ++I GLC+    +KA++LF ++   ++  P+  T   ++       +M+   
Sbjct: 304 KPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAE 363

Query: 364 KLLAQMEKLKFSVAADLEKFFEFL-----VGKEERIMMALDVFEELKGKGYS-SVPIYNI 417
            LL++M++    +A +   +   +      G  ER    ++V  E   +G+S +V  YN 
Sbjct: 364 MLLSRMKEQ--GLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNE---EGFSPNVCTYNA 418

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++  L + G V++A  +        L+ + ++++I I  H +  +I +A    NK+++  
Sbjct: 419 IVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSG 478

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P + +Y  L    C+   +  + M   + +      PT   Y   I   CR G     
Sbjct: 479 IQPDIHSYTTLIAVFCREKRMKESEMFFEEAV-RFGLVPTNKTYTSMICGYCREGNLRLA 537

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           ++  + M+  GC  + +   A+ISG+CK   L+EAR ++  + E+ L
Sbjct: 538 LKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGL 584



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 139/319 (43%), Gaps = 20/319 (6%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           KP+V  YTAMI     +  ++    +   MK+  +  +   Y TLI G CK G   R +E
Sbjct: 340 KPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYE 399

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L   M E G   +   Y  +++GL  +G+V +A  +LK    +G  AD   Y  +I   C
Sbjct: 400 LMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHC 459

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-VCCAE--MGRMDNFFKLLAQMEKLKFSV 376
           +  +  +A  LF   V+  + PD  +   L+ V C E  M   + FF+     E ++F +
Sbjct: 460 KQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFE-----EAVRFGL 514

Query: 377 AADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALY 433
               + +   + G  +E  + +AL  F  +   G +S  I Y  L+  L +  ++ +A  
Sbjct: 515 VPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARC 574

Query: 434 LFGKM--RGLN-LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           L+  M  +GL   EV  ++ +    C ++ G     C     +  + +   V   N L +
Sbjct: 575 LYDAMIEKGLTPCEVTRVTLAYE-YCKIDDG-----CSAMVVLERLEKKLWVRTVNTLVR 628

Query: 491 GLCKIGEIDAAMMLVRDCL 509
            LC   ++  A +     L
Sbjct: 629 KLCSERKVGMAALFFHKLL 647



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 16/197 (8%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G+  N  +YNA+   L +                +GR+ E  ++L+   RN    D  
Sbjct: 406 EEGFSPNVCTYNAIVDGLCK----------------KGRVQEAYKVLKSGFRNGLDADKV 449

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            YT +I     +  +   L ++ +M K  ++ D+ +Y TLI   C+  R+      F E 
Sbjct: 450 TYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEA 509

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              G++     Y  +I G   EG +  A      + D G  +D   Y ++I GLC+  + 
Sbjct: 510 VRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKL 569

Query: 325 DKAYKLFEVTVQDDLAP 341
           D+A  L++  ++  L P
Sbjct: 570 DEARCLYDAMIEKGLTP 586



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 129/322 (40%), Gaps = 27/322 (8%)

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD--------------------D 338
           +  S +R    +Y +    L   K F+KA+++ +  V+                      
Sbjct: 103 IASSKFRHFTRLYIACAASLISNKNFEKAHEVMQCMVKSFAEIGRVKEAIEMVIEMHNQG 162

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMM 396
           LAP   T+N ++    EMG ++    L  +M      V  +   +   +VG  K   ++ 
Sbjct: 163 LAPSTKTLNWVVKIVTEMGLVEYAENLFDEM--CARGVQPNCVSYRVMVVGYCKLGNVLE 220

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           +      +  +G+       ++++    E G V +AL+ F +   + L  N ++F+  I+
Sbjct: 221 SDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIE 280

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
              + G + +A E   +++     P+V  +  L  GLCK G  + A  L    + +    
Sbjct: 281 GLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHK 340

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    Y   I   CR  +  +   +L+ M ++G  PN    + +I G CK G  E A ++
Sbjct: 341 PNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYEL 400

Query: 576 FTNLRERKLLTEANTIVYDEIL 597
              + E       N   Y+ I+
Sbjct: 401 MNVMNEEGF--SPNVCTYNAIV 420



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 32/223 (14%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q  I + L +  KM ++  +PD+ +YT +I V   E+ +      +EE  +  +      
Sbjct: 461 QAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKT 520

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y ++I G C+ G +    + F  M ++G   D   YG LI GL  + K+ +A  L   ++
Sbjct: 521 YTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMI 580

Query: 301 DSGY------RADLG--------------------------IYNSIIGGLCRVKQFDKAY 328
           + G       R  L                             N+++  LC  ++   A 
Sbjct: 581 EKGLTPCEVTRVTLAYEYCKIDDGCSAMVVLERLEKKLWVRTVNTLVRKLCSERKVGMAA 640

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
             F   +  D   +  T+   +  C E  + D    L A++ K
Sbjct: 641 LFFHKLLDKDPNVNRVTIAAFMTACYESNKYDLVSDLSARIYK 683


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 112/444 (25%), Positives = 200/444 (45%), Gaps = 49/444 (11%)

Query: 181 QGRIAEMLEILEKMR-RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
            G+I +    +E++  + LC  D+  +   I  L     +     V++ M+K     + +
Sbjct: 29  SGKIEKAHRFVEQLLVKGLC--DISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRI 86

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  L+ GLC GGR+     L+  M + G   D   Y  L+ G    GK+ +A  +    
Sbjct: 87  TYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGA 146

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VC----- 352
           V  G+  D+  YN++I G C+  + D+A ++ +  V + L PD  T N L+  +C     
Sbjct: 147 VKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRV 206

Query: 353 --------------------------CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
                                     C E+ R+++  +LL +M  +      D+  +   
Sbjct: 207 DEARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKM--VLNGCKPDIVSYNAL 264

Query: 387 LVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           + G  +E+ +  AL +F  +  +GY   VP YNIL+  LL+   V +A  LF  +    L
Sbjct: 265 IHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGL 324

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
           E +++++++ I    ++G + +A      + E   VP V ++N +  GLCK   +D A +
Sbjct: 325 EPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEV 384

Query: 504 LVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           L+    G  A G  P    +   I   CR+G+ +K +    EM + G  P  V  + ++ 
Sbjct: 385 LLS---GMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVD 441

Query: 562 GMCK---HGTLEEARKVFTNLRER 582
           G+CK    G ++EA  +F  + E+
Sbjct: 442 GLCKARQEGRIKEAITLFDAMIEK 465



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 123/474 (25%), Positives = 215/474 (45%), Gaps = 31/474 (6%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           + GY  +  +YN L +   +                 G++ E L+I +   +    PDV 
Sbjct: 113 KAGYSPDVVTYNTLLHGFCK----------------VGKLDEALKIFDGAVKRGFVPDVV 156

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y A+I        LD   R+ + M  + +  DV+ Y +L+ GLCK GRV     L   +
Sbjct: 157 TYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARML---I 213

Query: 265 KENGILIDRAIYGVLIEGLVGE-GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
            + G   +   Y  LI GL  E  ++  A  LL+ +V +G + D+  YN++I GL R + 
Sbjct: 214 VDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQG 273

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
             +A KLF   ++    P+  T N L+    +  R++  F+L + +  +K  +  D   +
Sbjct: 274 VSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGL--VKHGLEPDAITY 331

Query: 384 FEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
             F+ G  K  R+  AL + +++  KG    V  +N ++  L +   V +A  L   M  
Sbjct: 332 TVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEA 391

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI---GE 497
                N++SF+  I     +G   +A     ++++    P+V  YN L  GLCK    G 
Sbjct: 392 KGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGR 451

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           I  A+ L  D +      P    Y+  I  + ++G+ +    +L  M  +GC PN    +
Sbjct: 452 IKEAITLF-DAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYN 510

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLS 611
           ++ISG+C    ++EA ++F  + E+  +   +TI Y  I+    K++  D  L+
Sbjct: 511 SLISGLCGLDKVDEALELFVAMVEKGCV--PDTITYGTIISALCKQEMVDKALA 562



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 112/441 (25%), Positives = 192/441 (43%), Gaps = 65/441 (14%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            KG+  N  +Y+ L   L R           EL     R+    ++LEKM  N CKPD+ 
Sbjct: 215 DKGFSPNVITYSTLISGLCR-----------ELR----RLESARQLLEKMVLNGCKPDIV 259

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
           +Y A+I  LA E+ +   L+++  + +   E +V  Y  LI GL K  RV    ELF  +
Sbjct: 260 SYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGL 319

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            ++G+  D   Y V I+GL   G+V  A  +LKD+ + G   D+  +N++I GLC+ K+ 
Sbjct: 320 VKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRV 379

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           D+A  L         +P+  + N L+      G+                          
Sbjct: 380 DEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKK----------------------- 416

Query: 385 EFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI---GEVKKALYLFGKMRG 440
                       A+  F+E+  +G   +V  YNIL+  L +    G +K+A+ LF  M  
Sbjct: 417 ------------AMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIE 464

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
                + +++S  I    ++G + +A      +     +P+V  YN L  GLC + ++D 
Sbjct: 465 KGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDE 524

Query: 501 AM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           A+     M+ + C+      P    Y   I  +C+    +K + + +   + G  P   +
Sbjct: 525 ALELFVAMVEKGCV------PDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGM 578

Query: 556 CSAIISGMCKHGTLEEARKVF 576
             ++I G+C    ++EA K+ 
Sbjct: 579 YFSLIDGLCAVARVDEALKLL 599



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 149/352 (42%), Gaps = 45/352 (12%)

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           D    G+L+  L+  GK+ KA   ++ L+  G   D+  +N  I GLCR  +   A  +F
Sbjct: 15  DAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGL-CDISTFNIYISGLCRASRIGDAQTVF 73

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE 391
           +   +    P+  T N LL      GRM +                              
Sbjct: 74  DGMRKHGFWPNRITYNALLSGLCNGGRMSD------------------------------ 103

Query: 392 ERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
                A  ++E +   GYS  V  YN L+    ++G++ +AL +F          + +++
Sbjct: 104 -----AQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTY 158

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +  I    ++  + EA     +++  S VP V  YN L  GLCK G +D A ML+ D   
Sbjct: 159 NALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVD--- 215

Query: 511 NVASGPTEFKYALTILHVCRS-GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
                P    Y+  I  +CR     E   ++L +M   GC P+ V  +A+I G+ +   +
Sbjct: 216 -KGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGV 274

Query: 570 EEARKVFTNLRERKLLTEANT--IVYDEILIEHMKKKTADLVLSGLKFFGLE 619
            EA K+F ++  +    E  T  I+ D +L E    +  +L  SGL   GLE
Sbjct: 275 SEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFEL-FSGLVKHGLE 325



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 13/188 (6%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G K    +YN L   L +                +GRI E + + + M      PDV 
Sbjct: 426 KRGVKPTVVTYNILVDGLCKAR-------------QEGRIKEAITLFDAMIEKGRVPDVV 472

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y+A+I  L     LD   R+   M+      +V  Y +LI GLC   +V    ELF  M
Sbjct: 473 TYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAM 532

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            E G + D   YG +I  L  +  V KA  L    +++G     G+Y S+I GLC V + 
Sbjct: 533 VEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARV 592

Query: 325 DKAYKLFE 332
           D+A KL +
Sbjct: 593 DEALKLLQ 600


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 141/551 (25%), Positives = 235/551 (42%), Gaps = 81/551 (14%)

Query: 119 PDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV---- 174
           P  VA V+K + NP  A + F+   K+ G+KH   +Y  +   L  +  F A ++V    
Sbjct: 7   PKHVAAVVKYQKNPLKALEIFNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAET 66

Query: 175 -----PELMDS-----------QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
                  L++            +G+I E +++ E+M    C+P V +Y A++ +L   R 
Sbjct: 67  RMNIDNGLLEGVYIGAMRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRY 126

Query: 219 LDACLRVWEEMKKDLVEADV-----------------------------------MAYVT 243
            D   +V+  M+   +  DV                                   +AY T
Sbjct: 127 FDQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCT 186

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I G  +    V  HELF EM   GI  D   +  LI  L  +G V ++  LL  ++  G
Sbjct: 187 VIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRG 246

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
              +L   N  I G C+    ++A +L +  V   L PD  T N L+      G   N F
Sbjct: 247 VSPNLFTVNIFIQGFCQRAMLNEAIRLLD-GVGRGLTPDVITYNTLIC-----GLCKN-F 299

Query: 364 KLLAQMEKLKFSVAADLE----KFFEFLVGKEERIMM--ALDVFEELKGKGYSSVP---I 414
           K++     L+  V    E     +   + G  +  MM  A  +  +   KG+  VP    
Sbjct: 300 KVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGF--VPDEST 357

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y  L+  L + G++ +A+ +F +     L+ N +  +  ++   + G IL+A +  N++ 
Sbjct: 358 YCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMS 417

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSG 532
           E    P +  YN +  GLCKIG +  A  LV D    +A G  P  F +   I   C+  
Sbjct: 418 ENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDA---IAKGHLPDVFTFNTLIDGYCKKL 474

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           + +  IE+++ M   G  P+ +  ++I++G+CK G  E+    F  + E+  +   N I 
Sbjct: 475 KLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCV--PNIIT 532

Query: 593 YDEILIEHMKK 603
           Y+ IL E   K
Sbjct: 533 YN-ILTESFCK 542



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 101/441 (22%), Positives = 184/441 (41%), Gaps = 50/441 (11%)

Query: 170 AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
           A +++   +  +G + E   +L K+ +    P++F     I+       L+  +R+ + +
Sbjct: 218 AFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGV 277

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
            + L   DV+ Y TLI GLCK  +VV      R+M   G   D   Y  +I+G    G +
Sbjct: 278 GRGLT-PDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMM 336

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
             A  +L+D    G+  D   Y S+I GLC+    D+A  +F   ++  L P+    N L
Sbjct: 337 QNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTL 396

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY 409
           +   ++ G                                    I+ AL +  E+   G 
Sbjct: 397 VKGLSQQGL-----------------------------------ILQALKLMNEMSENGC 421

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           S  +  YN+++  L +IG V  A  L           +  +F+  I  + +   +  A E
Sbjct: 422 SPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIE 481

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYAL 523
             +++      P V  YN +  GLCK G+ +  M     M+ + C+ N+ +      Y +
Sbjct: 482 IVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIIT------YNI 535

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
                C++ + E+ + ++ EM  +G  P+ V    ++ G C +G L+ A ++F  + E+ 
Sbjct: 536 LTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQY 595

Query: 584 LLTEANTIVYDEILIEHMKKK 604
             +  +TI    I+I     K
Sbjct: 596 KFS--HTIATYNIMINAFAGK 614



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 101/453 (22%), Positives = 202/453 (44%), Gaps = 37/453 (8%)

Query: 115 RRVTPDLVAEVLKV----ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRA 170
           R +TPD++     +    +N   + ++ +      +GY+ +  +YN++     +  + + 
Sbjct: 279 RGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQN 338

Query: 171 ADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK 230
           ADQ+      +G +                PD   Y ++I  L  + ++D  + V+ E  
Sbjct: 339 ADQILRDGAFKGFV----------------PDESTYCSLINGLCQDGDIDRAINVFNEAM 382

Query: 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
           +  ++ +++   TL+ GL + G +++  +L  EM ENG   D   Y ++I GL   G V 
Sbjct: 383 EKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVS 442

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            A +L+ D +  G+  D+  +N++I G C+  + D A ++ +      ++PD  T N +L
Sbjct: 443 DADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSIL 502

Query: 351 VCCAEMGRMDNF---FKLLAQMEKLKFSVAADL--EKFFEFLVGKEERIMMALDVFEELK 405
               + G+ ++    FKL+ +   +   +  ++  E F      K  ++  AL++ EE++
Sbjct: 503 NGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFC-----KARKVEEALNLIEEMQ 557

Query: 406 GKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM-RGLNLEVNSLSFSIAIQCHVESGDI 463
            KG +  V  +  LM    + G++  A  LF ++           +++I I       ++
Sbjct: 558 NKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNM 617

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA--AMMLVRDCLGNVASGPTEFKY 521
             A +  NK+ E    P    Y  +  G CK G I++  + +LV+   G + S  T F  
Sbjct: 618 NMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPS-LTTFGR 676

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
            L  L  C      + + +++ M  +G  P  V
Sbjct: 677 VLNCL--CLKRRVHEAVGIIHLMVHKGIVPEVV 707


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 198/415 (47%), Gaps = 20/415 (4%)

Query: 185 AEMLEILEKMRRNLC----KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           A+ + +L K+R  +      PDV+ Y+ +I      R  D   +V  EM++     + + 
Sbjct: 95  ADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVT 154

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI GLC+ G V       ++M++ G++ D   YG LI GL    +  +A  LL ++ 
Sbjct: 155 YNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS 214

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +  + ++ +Y ++I G  R    D+A+K+ +  V   + P+  T + L+    +MG+MD
Sbjct: 215 CAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMD 274

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
               LL QM  ++ S   D   +   + G  +      A  +  E++  G S +V  Y+I
Sbjct: 275 RASLLLKQM--VRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSI 332

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++  L + GE +KA  L  +M    L+ N+  ++  I  +   G++  ACE  +K+ +++
Sbjct: 333 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 392

Query: 478 QVPSVAAYNCLTKGLCKIGEIDA-----AMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
            +P +  YN L  GL K+G ++      A M  R  L      P EF Y+  I    ++G
Sbjct: 393 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLL------PNEFTYSGLIHGYLKNG 446

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           + E   +++  M   G  PN+VI   ++    K   +E+    F ++ ++ ++ +
Sbjct: 447 DLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLD 501



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 185/397 (46%), Gaps = 7/397 (1%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++LE+M     KP+ F Y  +I     E N+     ++++M K  V  D+  Y +LI GL
Sbjct: 348 DLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGL 407

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
            K GRV    + F +M+E G+L +   Y  LI G +  G +  A  L++ ++D+G + + 
Sbjct: 408 SKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPND 467

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
            IY  ++    +    +K    F+  +   +  D      L+   +  G M+  F++L++
Sbjct: 468 VIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSE 527

Query: 369 MEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
           +E  K     D+  +   + G  K      A  + +E+  KG   ++  YN L+  L + 
Sbjct: 528 IE--KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKS 585

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G++  A  +F  +    L  N ++++  I    + GDI  A   +N+++     P    Y
Sbjct: 586 GDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVY 645

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           + LT G    G+++ AM L+ +      +  + F   +     C+ G+ ++ +++L+ + 
Sbjct: 646 SVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVD--GFCKRGKMQETLKLLHVIM 703

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             G  PN +    IISG+ + G L E   +F  L+++
Sbjct: 704 GRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQK 740



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 115/478 (24%), Positives = 214/478 (44%), Gaps = 31/478 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           +++G   N  +YN L   L R+     A    + M+  G                   R 
Sbjct: 144 RERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRS 203

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E   +L++M     KP+V  Y  +I     E N D   ++ +EM    V+ + + Y  L
Sbjct: 204 NEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNL 263

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + GLCK G++ R   L ++M  +    D   Y ++IEG         A  LL ++ ++G 
Sbjct: 264 VRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGI 323

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  Y+ +I GLC+  + +KA  L E      L P+     PL+      G +    +
Sbjct: 324 SPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACE 383

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IYNILM 419
           +  +M K+  +V  DL  +   + G  K  R+  +   F +++ +G   +P    Y+ L+
Sbjct: 384 IFDKMTKV--NVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGL--LPNEFTYSGLI 439

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
              L+ G+++ A  L  +M    L+ N + +   ++ + +S DI +       +++   +
Sbjct: 440 HGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVM 499

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
                Y  L   L   G ++AA  ++ +   N  S P    Y+  I  +C++ + EK   
Sbjct: 500 LDNRIYGILIHNLSSSGNMEAAFRVLSEIEKN-GSVPDVHVYSSLISGLCKTADREKAFG 558

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +L+EM+++G  PN V  +A+I G+CK G +  AR VF ++  + L+   N + Y  ++
Sbjct: 559 ILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLV--PNCVTYTSLI 614



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 108/440 (24%), Positives = 190/440 (43%), Gaps = 42/440 (9%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +L++M R+  +PD   Y  +I       N     R+  EM+   +  +V  Y  +I GLC
Sbjct: 279 LLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLC 338

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           + G   +  +L  EM   G+  +  +Y  LI G   EG V  AC++   +       DL 
Sbjct: 339 QSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLY 398

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            YNS+I GL +V + +++ K F    +  L P+  T + L+    + G +++  +L+ +M
Sbjct: 399 CYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRM 458

Query: 370 EKLKFS----VAADL-EKFFE----------FLVGKEERIMM------------------ 396
                     +  DL E +F+          F    ++ +M+                  
Sbjct: 459 LDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNM 518

Query: 397 --ALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
             A  V  E++  G  SVP   +Y+ L+  L +  + +KA  +  +M    ++ N + ++
Sbjct: 519 EAAFRVLSEIEKNG--SVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYN 576

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
             I    +SGDI  A    N I+    VP+   Y  L  G CK+G+I  A  L  + L  
Sbjct: 577 ALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT 636

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
             + P  F Y++       +G+ E+ + ++ EM   G        + ++ G CK G ++E
Sbjct: 637 GIT-PDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSF-NNLVDGFCKRGKMQE 694

Query: 572 ARKVFTNLRERKLLTEANTI 591
             K+   +  R L+  A TI
Sbjct: 695 TLKLLHVIMGRGLVPNALTI 714



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 114/510 (22%), Positives = 208/510 (40%), Gaps = 96/510 (18%)

Query: 89  ARFITDAFRKNQFQWGPQVVTELSKLRRVTPDL---------VAEVLKVENNPTLASKFF 139
           A  I+   R+       ++  +++K+  V PDL         +++V +VE     ++K+F
Sbjct: 366 APLISGYCREGNVSLACEIFDKMTKVN-VLPDLYCYNSLIFGLSKVGRVEE----STKYF 420

Query: 140 HWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG----------------- 182
               +++G   N  +Y+ L +   +N    +A+Q+ + M   G                 
Sbjct: 421 AQM-QERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFK 479

Query: 183 --RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
              I ++    + M       D   Y  +I  L++  N++A  RV  E++K+    DV  
Sbjct: 480 SDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHV 539

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI GLCK     +   +  EM + G+  +   Y  LI+GL   G +  A ++   ++
Sbjct: 540 YSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSIL 599

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   +   Y S+I G C+V     A+ L+   +   + PD    + L   C       
Sbjct: 600 AKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC------- 652

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
                         S A DLE+              A+ + EE+  +G++S+  +N L+ 
Sbjct: 653 --------------SSAGDLEQ--------------AMFLIEEMFLRGHASISSFNNLVD 684

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G++++ L L   + G  L  N+L+    I    E+G +    E H   +E+ Q  
Sbjct: 685 GFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKL---SEVHTIFVELQQKT 741

Query: 481 SVAA---------------------YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           S +A                      + + +  CK G +D A+ML RD +    S P   
Sbjct: 742 SESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALML-RDVI-VAKSAPMGC 799

Query: 520 KYALTIL-HVCRSGEAEKIIEVLNEMTQEG 548
              L I+ ++CR G+  + + +L EM + G
Sbjct: 800 SSYLAIVDNLCRKGKLSEALNLLKEMDKRG 829



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 149/352 (42%), Gaps = 41/352 (11%)

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
           A+  VL++     G+V  A +++  + D G    +   N+++  L R       +K+ E 
Sbjct: 48  AVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREF 107

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER 393
            V   ++PD  T + L+    ++   D   K+L +M +    +       +  L+    R
Sbjct: 108 MVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNT---VTYNVLIAGLCR 164

Query: 394 IMMALDVFEELKG-KGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
                + F   K  + Y  VP    Y  L+  L +     +A  L  +M    L+ N + 
Sbjct: 165 SGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVV 224

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML----V 505
           ++  I   +  G+  EA +   +++     P+   Y+ L +GLCK+G++D A +L    V
Sbjct: 225 YANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMV 284

Query: 506 RDC------------------------------LGNVASGPTEFKYALTILHVCRSGEAE 535
           RD                               + N    P  + Y++ I  +C+SGE E
Sbjct: 285 RDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPE 344

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           K  ++L EMT +G  PN  + + +ISG C+ G +  A ++F  + +  +L +
Sbjct: 345 KASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPD 396


>gi|15219974|ref|NP_173709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806406|sp|P0C7Q9.1|PPR56_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g22960, mitochondrial; Flags: Precursor
 gi|332192194|gb|AEE30315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 718

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 123/527 (23%), Positives = 233/527 (44%), Gaps = 45/527 (8%)

Query: 113 KLRRVTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA 171
           +L    P+L+  VL  +   P +A +FF+W  +Q   K +  ++ A+   L+ N+L   A
Sbjct: 79  RLLLTDPNLLIRVLNMIRVKPEIAFRFFNWIQRQSDVKQSRQAFAAMLEILAENDLMSEA 138

Query: 172 DQVPE-------------LMD-------------------SQGRIAE-MLEILEKMRRNL 198
             V E             L+D                   ++  +AE  L   EKM R  
Sbjct: 139 YLVAERSIDLGMHEIDDLLIDGSFDKLIALKLLDLLLWVYTKKSMAEKFLLSFEKMIRKG 198

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
             P V     +++VL   R ++    V+E M +  +   V+ + T++    K G + R  
Sbjct: 199 FLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERVD 258

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           +++ EMK   I      Y +LI G    GK+ +A     D+  SG+      +N +I G 
Sbjct: 259 KIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGY 318

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C+   FD A+ + +  +   + P  ST N  +    + GR+D+  +LL+ M       A 
Sbjct: 319 CKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSM------AAP 372

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELK-GKGYSSVPIYNILMGALLEIGEVKKALYLF 435
           D+  +   + G  K  + + A  +F++L+ G  + S+  YN L+  L E G ++ A  L 
Sbjct: 373 DVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLK 432

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M    +  + ++++  ++  V++G++  A E +++++     P   AY     G  ++
Sbjct: 433 EEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRL 492

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G+ D A  L  + +      P    Y + I  +C+ G   K IE   ++ + G  P+ V 
Sbjct: 493 GDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVT 552

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
            + +I G  ++G  + AR ++  +  ++L    + I Y  ++  H K
Sbjct: 553 YTTVIRGYLENGQFKMARNLYDEMLRKRLY--PSVITYFVLIYGHAK 597



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 99/483 (20%), Positives = 195/483 (40%), Gaps = 74/483 (15%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           + E M  +   P V  +  M+       +L+   ++W EMK+  +E   + Y  LI G  
Sbjct: 225 VYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFS 284

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA----------------- 292
           K G++        +M+ +G  +    +  LIEG   +G    A                 
Sbjct: 285 KNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTS 344

Query: 293 ---------CDL-----LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
                    CD       ++L+ S    D+  YN+++ G  ++ +F +A  LF+     D
Sbjct: 345 TYNIYICALCDFGRIDDARELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGD 404

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME-KLKFSVAADLEKFFEFLVGKEERIMMA 397
           + P   T N L+    E G ++   +L  +M  +L F          +  V K   + MA
Sbjct: 405 IHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFV-KNGNLSMA 463

Query: 398 LDVFEELKGKG-------YSS------------------------------VPIYNILMG 420
            +V++E+  KG       Y++                              + IYN+ + 
Sbjct: 464 TEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRID 523

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L ++G + KA+    K+  + L  + ++++  I+ ++E+G    A   +++++     P
Sbjct: 524 GLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYP 583

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           SV  Y  L  G  K G ++ A     + +      P    +   +  +C++G  ++    
Sbjct: 584 SVITYFVLIYGHAKAGRLEQAFQYSTE-MKKRGVRPNVMTHNALLYGMCKAGNIDEAYRY 642

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           L +M +EG PPN+   + +IS  C     EE  K++  + ++++  +  T      L +H
Sbjct: 643 LCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEPDGYT---HRALFKH 699

Query: 601 MKK 603
           ++K
Sbjct: 700 LEK 702



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 178/408 (43%), Gaps = 49/408 (12%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAY-TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           GRI +  E+L  M      PDV +Y T M   +   + ++A L ++++++   +   ++ 
Sbjct: 357 GRIDDARELLSSM----AAPDVVSYNTLMHGYIKMGKFVEASL-LFDDLRAGDIHPSIVT 411

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI GLC+ G +     L  EM    I  D   Y  L++G V  G +  A ++  +++
Sbjct: 412 YNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEML 471

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV-QDDLAPDFSTVNPLLVCCAEMGRM 359
             G + D   Y +   G  R+   DKA++L E  V  D  APD +  N          R+
Sbjct: 472 RKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNV---------RI 522

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
           D   K+   ++ ++F       K F        R+ +  D               Y  ++
Sbjct: 523 DGLCKVGNLVKAIEFQ-----RKIF--------RVGLVPDHV------------TYTTVI 557

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
              LE G+ K A  L+ +M    L  + +++ + I  H ++G + +A +   ++ +    
Sbjct: 558 RGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVR 617

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKII 538
           P+V  +N L  G+CK G ID A   +  C +      P ++ Y + I   C   + E+++
Sbjct: 618 PNVMTHNALLYGMCKAGNIDEAYRYL--CKMEEEGIPPNKYSYTMLISKNCDFEKWEEVV 675

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
           ++  EM  +   P+     A+   + K     E+R+V     ER LL+
Sbjct: 676 KLYKEMLDKEIEPDGYTHRALFKHLEKD---HESREV--EFLERLLLS 718


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 198/450 (44%), Gaps = 58/450 (12%)

Query: 116 RVTPDLVAEVLK---VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLS--------R 164
           +++P+ V  VL+   +   P +A +FF WAGKQK Y H    + +L   L+        R
Sbjct: 109 KLSPNFVTFVLQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIR 168

Query: 165 NNLFR-----------AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
              F            AA+ + +   + G + E+L +  +M+ N   P ++ Y  ++  L
Sbjct: 169 LVFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGL 228

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
                +++  +V+E M    +  D + Y  +I G CK G++ +  E FR+M+   +  D+
Sbjct: 229 VNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDK 288

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             Y  LI+    E        L  ++ + G       Y+ +IGGLC+ ++  +AY +FE 
Sbjct: 289 ITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFET 348

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA--------------- 378
             Q     + +    L+   ++ G M+   +L  +M+   F   A               
Sbjct: 349 MNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGR 408

Query: 379 --DLEKFFEFL------------------VGKEERIMMALDVFEELKGKGYSSVPI-YNI 417
             D  + F+F                   +GK  RI  A ++FEE+  KG +     YN 
Sbjct: 409 LDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNA 468

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++ AL + G++ +AL LFG+M     +    +F+I I    +     EA +  +K+I+  
Sbjct: 469 IIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKG 528

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
             P+VA++  L  GLC  G++  A  ++ D
Sbjct: 529 ITPTVASFRALAIGLCLCGKVARACKILDD 558



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 140/331 (42%), Gaps = 37/331 (11%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q +  E   + E M +  C+ +V  YTA+I   +   +++  +R++E MK +  E D + 
Sbjct: 336 QRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVT 395

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ GLCK GR+  G ELF   +  G+ I+   Y  LI+GL   G++  A +L +++ 
Sbjct: 396 YSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMS 455

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G   D   YN+II  L +  + D+A  LF    ++       T   L+         D
Sbjct: 456 EKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILI---------D 506

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
             FK     E +KF                          ++++  KG + +V  +  L 
Sbjct: 507 GLFKEHKNEEAIKF--------------------------WDKMIDKGITPTVASFRALA 540

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L   G+V +A  +   +  + + +   +F   I    ++  I EAC+  + I++  + 
Sbjct: 541 IGLCLCGKVARACKILDDLAPMGI-IPETAFEDMINTLCKAQRIKEACKLADGIVDRGRE 599

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
                   L   L K G  D  + L+   +G
Sbjct: 600 IPGRIRTVLINALRKAGNSDLVIKLMHSKIG 630


>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
 gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
          Length = 886

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 116/487 (23%), Positives = 197/487 (40%), Gaps = 100/487 (20%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL-- 248
            E MR    +P+ F +T+++   A   ++   L   EEMK + +E  V+ Y  LI G   
Sbjct: 274 FENMRARGIEPNAFVFTSLVHAYAVAGDMRGALSCVEEMKSEGIEMTVVTYSILISGYGK 333

Query: 249 ---------------------------------CKGGRVVRGHELFREMKENGI------ 269
                                            C+ G + R  EL REM+E+GI      
Sbjct: 334 TNDAQSADNLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDV 393

Query: 270 -------------------LIDR----------AIYGVLIEGLVGEGKVGKACDLLKDLV 300
                              + +R            YG LI   V  GKV KA  + K++ 
Sbjct: 394 YHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEME 453

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + +   Y+ +I G   +  F  A+ +FE  ++  L PD +  N L+    +MG MD
Sbjct: 454 SHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMD 513

Query: 361 NFFKLLAQMEKLK--------------FSVAADLEKFFEFLVGKEERIMMALDVFEELKG 406
              ++  +M+K +              F+VA D+++              A D  + ++ 
Sbjct: 514 RAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKR--------------AFDTLDLMRR 559

Query: 407 KGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G + +V  YN L+  L+   +V+KA+ +  KM    +  N  +++I ++ +  SGDI +
Sbjct: 560 SGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGK 619

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A E   KI E      V  Y  L +  CK G + +A+ + R+         T F Y + I
Sbjct: 620 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT-FIYNILI 678

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
               R G+  +  ++L +M ++G PPN    ++ I+  CK G ++ A  V   + +  L 
Sbjct: 679 DGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLK 738

Query: 586 TEANTIV 592
               T  
Sbjct: 739 PNVKTFT 745



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/434 (21%), Positives = 164/434 (37%), Gaps = 74/434 (17%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           KP    +  M+   A   +       +E M+   +E +   + +L+      G +     
Sbjct: 248 KPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAGDMRGALS 307

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
              EMK  GI +    Y +LI G         A +L K+        +  IY++II   C
Sbjct: 308 CVEEMKSEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNGIIYSNIIHAHC 367

Query: 320 RVKQFDKAYKLFEVTVQDDL-APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           +    D+A +L     +D + AP                 +D +  ++       ++V  
Sbjct: 368 QSGNMDRAEELVREMEEDGIDAP-----------------IDVYHSMMH-----GYTVVQ 405

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGK 437
           D +K               L VFE LK  G+    I Y  L+   +++G+V KA+ +  +
Sbjct: 406 DEKK--------------CLIVFERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISKE 451

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M    ++ N+ ++S+ I   +   D   A      +I+    P  A YN L +  CK+G 
Sbjct: 452 MESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGN 511

Query: 498 IDAAMMLVR----------------------------------DCLGNVASGPTEFKYAL 523
           +D A+ +                                    D +      PT   Y  
Sbjct: 512 MDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNA 571

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I  + R  + EK + VL++M+  G  PNE   + I+ G    G + +A + FT ++E  
Sbjct: 572 LIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESG 631

Query: 584 LLTEANTIVYDEIL 597
           L  + +  +Y+ +L
Sbjct: 632 L--KLDVYIYETLL 643



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 140/350 (40%), Gaps = 23/350 (6%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G KHN  +Y+ L      N      D            A    I E M ++  +PD   Y
Sbjct: 456 GIKHNNKTYSMLI-----NGFIHLHD-----------FANAFSIFEDMIKSGLQPDRAIY 499

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             ++       N+D  +R++E M+K+ ++     +  +I G    G + R  +    M+ 
Sbjct: 500 NLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRR 559

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           +G       Y  LI GLV + +V KA  +L  +  +G   +   Y  I+ G        K
Sbjct: 560 SGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGK 619

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A++ F    +  L  D      LL  C + GRM +    LA   ++ F         +  
Sbjct: 620 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQS---ALAVTREMSFQKIPRNTFIYNI 676

Query: 387 LVGKEER---IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
           L+    R   +  A D+ +++K  G   ++  +   + A  + G++++A  +  +M  + 
Sbjct: 677 LIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVG 736

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
           L+ N  +F+  I+          A +C  ++      P  AAY+CL   L
Sbjct: 737 LKPNVKTFTTLIKGWARVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSL 786



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 98/227 (43%), Gaps = 16/227 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G      +YNAL + L R +                ++ + + +L+KM      P+ 
Sbjct: 558 RRSGCAPTVMTYNALIHGLVRKH----------------QVEKAVSVLDKMSIAGIAPNE 601

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT ++R  AA  ++      + ++K+  ++ DV  Y TL+   CK GR+     + RE
Sbjct: 602 HTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTRE 661

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M    I  +  IY +LI+G    G V +A DLLK + + G   ++  + S I   C+   
Sbjct: 662 MSFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGD 721

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
             +A  + +      L P+  T   L+   A +   D   K   +M+
Sbjct: 722 MQRAENVIQEMADVGLKPNVKTFTTLIKGWARVSLPDRALKCFEEMK 768



 Score = 38.9 bits (89), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 25/129 (19%)

Query: 150 HNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAM 209
           H F SY  +  C    ++ RA + + E+ D                    KP+V  +T +
Sbjct: 707 HTFTSY--INACCKAGDMQRAENVIQEMADVG-----------------LKPNVKTFTTL 747

Query: 210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH------ELFRE 263
           I+  A     D  L+ +EEMK   ++ D  AY  L+  L     V+ G        + RE
Sbjct: 748 IKGWARVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGIFSVCRE 807

Query: 264 MKENGILID 272
           M EN + +D
Sbjct: 808 MFENDLTVD 816


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 184/410 (44%), Gaps = 13/410 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + +  ++++ MR +  K   F Y  +I  L A   ++    +  EM+ + +   V+ 
Sbjct: 279 KGELEKAAQLVDIMRLSK-KASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVT 337

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI GL K G        F EM+  G+L D   Y  LI G    G + +A  L  DL 
Sbjct: 338 YNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLK 397

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGR 358
            +G    +  YN +I G CR+   + A +L E   ++D  PD  T   L+   C      
Sbjct: 398 RAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLA 457

Query: 359 MDNFF--KLLAQ-MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI- 414
           M   F  ++L++ +E   F+    +    E  +G    I  A  + EE+  +G SS  + 
Sbjct: 458 MVRIFFDEMLSKGLEPDCFAYNTRISA--ELTIGA---ITNAFQLREEMMLRGISSDTVT 512

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YN+L+  L + G +K A  L+ KM    L ++ ++++  I  H E G ++EA    + ++
Sbjct: 513 YNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMV 572

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                PSV  Y       C+ G +  A    R  L      P E  Y + +  +CR G  
Sbjct: 573 ASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVE-PNEVTYNVLMHALCRMGRT 631

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           E   +  +EM + G  PN+   + +I G CK G    A +++  + ++ +
Sbjct: 632 ESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGI 681



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 124/512 (24%), Positives = 198/512 (38%), Gaps = 96/512 (18%)

Query: 165 NNLFRAADQVPELMDSQGRI-----AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL 219
           N+L R + +      +Q  +      + L   ++M R+   P V     ++RVL      
Sbjct: 151 NSLLRMSTKFSAECQAQKSVPASCSTQCLSAFQEMARHGVAPFVKECNCVLRVLRDAARW 210

Query: 220 DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM--KENGILIDRAIYG 277
           D    V+ +M +  VE  +  Y TL+   CK GR+ +   L ++M  +  G L +   Y 
Sbjct: 211 DDMRAVYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYN 270

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           V+I GL  +G++ KA  L+ D++    +A    YN +I GL      +KA  L      +
Sbjct: 271 VVINGLARKGELEKAAQLV-DIMRLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENE 329

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKL-LAQMEKLKF------SVAADLEKFFEFLVG- 389
            + P   T N L+         D  FK   A+  ++KF       +  DL  +   + G 
Sbjct: 330 GIVPTVVTYNTLI---------DGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGY 380

Query: 390 -KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL------------- 434
            K   +  AL +F +LK  G   +V  YNIL+     +G+++ A  L             
Sbjct: 381 CKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDV 440

Query: 435 ----------------------FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
                                 F +M    LE +  +++  I   +  G I  A +   +
Sbjct: 441 CTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREE 500

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAA----MMLVRD----------CL--------- 509
           ++          YN L  GLCK G +  A    M +V D          CL         
Sbjct: 501 MMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGR 560

Query: 510 ---------GNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
                    G VASG  P+   Y + I   CR G          +M +EG  PNEV  + 
Sbjct: 561 LIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNV 620

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           ++  +C+ G  E A + F  + ER L+    T
Sbjct: 621 LMHALCRMGRTESAYQHFHEMLERGLVPNKYT 652



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 132/335 (39%), Gaps = 9/335 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + + L +   ++R    P V  Y  +I       +L+   R+ EEM ++    DV  Y
Sbjct: 384 GNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTY 443

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ G C    +      F EM   G+  D   Y   I   +  G +  A  L ++++ 
Sbjct: 444 TILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMML 503

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G  +D   YN +I GLC+      AY L+   V D L  D  T   L+    E GR+  
Sbjct: 504 RGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIE 563

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
              +   M     S +      F     +   + +A   F ++  +G     + YN+LM 
Sbjct: 564 AKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMH 623

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA----CECHNKIIEM 476
           AL  +G  + A   F +M    L  N  ++++ I    + G+ + A    CE H K I  
Sbjct: 624 ALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIH- 682

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
              P    +N L KG  +    DA   L    LG 
Sbjct: 683 ---PDHCTHNALFKGFGEGHMYDAVQYLENVVLGT 714



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 68/155 (43%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E   I + M  +   P V  YT  I       NL      + +M ++ VE + + 
Sbjct: 558 RGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVT 617

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+  LC+ GR    ++ F EM E G++ ++  Y +LI+G   EG    A  L  ++ 
Sbjct: 618 YNVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMH 677

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
             G   D   +N++  G      +D    L  V +
Sbjct: 678 QKGIHPDHCTHNALFKGFGEGHMYDAVQYLENVVL 712


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 210/472 (44%), Gaps = 54/472 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR  + +++L++MR   C P+++ Y  ++  L  ER LD   ++ EEM       DV+ Y
Sbjct: 94  GRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTY 153

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            + I GLCK  RV    +    M    +  D   Y  +I GL   G +  A  +L  + +
Sbjct: 154 NSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTN 210

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  Y+S+I G C+  + ++A  L +  ++    P+    N LL     +G +  
Sbjct: 211 RGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGK 270

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
              +L +ME+  F+   D+  +   + G  K ER+  A  VF+ +  +G + +   Y++L
Sbjct: 271 AEDMLVEMERRGFT--PDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSML 328

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L +  E+  A+ L  + R     V+ L +++ +    + G   EAC   +K+++   
Sbjct: 329 VEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKI 388

Query: 479 V-PSVAAYNCLTKGLCKIGEIDAAM-----MLVRDC------------------------ 508
             P V  YN +    CK  +ID A+     ML R+C                        
Sbjct: 389 CEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNILVHGLCVDDRLSDAET 448

Query: 509 --LGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
             L  V  G  P    Y   +  +C+ G++   +E+  E  + GC P+ V  SA+I+G+ 
Sbjct: 449 MLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLV 508

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFF 616
                EEA  +FT L         +  +++ +++ + +  + DL   GLK F
Sbjct: 509 HENMAEEAYLLFTKL---------DVALWNAMILGYAENGSGDL---GLKLF 548



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 199/430 (46%), Gaps = 55/430 (12%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++L +M+   C PD   Y A+I   +  ++     +   EM K+     V+ Y  ++ GL
Sbjct: 31  QLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGL 90

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           CK GR     +L  EM++ G   +   Y V++EGL  E K+ +A  +L+++   GY  D+
Sbjct: 91  CKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDV 150

Query: 309 GIYNSIIGGLCRVKQFDKAYK-LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
             YNS I GLC+  + D+A K L  + V  D+    + +N L     + G +D+  ++L 
Sbjct: 151 VTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGL----CKSGDLDSASRMLD 206

Query: 368 QMEKLKFSVAADLEKFFEFLV-----GKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422
           QM         D+  +   +      G+ ER M  LD   +L  +   ++  YN L+GAL
Sbjct: 207 QMTNR--GCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCR--PNMVAYNSLLGAL 262

Query: 423 LEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
             +G + KA  +  +M  RG   +V S +  I   C  E   + +A    ++++E    P
Sbjct: 263 HRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAER--VKKAKAVFDRMVERGCTP 320

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           + ++Y+ L + LCK  E+D A+ LV                        ++ E  +I+++
Sbjct: 321 NASSYSMLVEELCKKKELDDAITLVE-----------------------QAREKYQIVDI 357

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           L             + + ++ G+CK G  +EA  +F+ + + K + E +   Y+ +L  H
Sbjct: 358 L-------------LYTVLLDGLCKGGRFDEACALFSKVLDEK-ICEPDVFFYNVMLDSH 403

Query: 601 MKKKTADLVL 610
            K++  D  L
Sbjct: 404 CKRRQIDKAL 413



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 124/299 (41%), Gaps = 40/299 (13%)

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           ++D   + D   +  ++ GLCR  Q +KA +L     +    PD +  N L+        
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALIS------- 53

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL 418
                          +S A D  + F+FL              E +K     +V  Y  +
Sbjct: 54  --------------GYSKAKDFGQAFKFLA-------------EMVKNHCLPTVVTYTNI 86

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L + G  K A+ L  +MR      N  ++++ ++   E   + EA +   ++     
Sbjct: 87  VDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGY 146

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P V  YN   KGLCK   +D A    R  L  +   P    Y   I  +C+SG+ +   
Sbjct: 147 FPDVVTYNSFIKGLCKCDRVDEA----RKFLARMPVTPDVVSYTTVINGLCKSGDLDSAS 202

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            +L++MT  GC P+ V  S++I G CK G +E A  +  ++   KL    N + Y+ +L
Sbjct: 203 RMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSM--LKLGCRPNMVAYNSLL 259



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 111/519 (21%), Positives = 207/519 (39%), Gaps = 82/519 (15%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCK--- 200
           + KG   N  +YN +   L        A ++ E M  +G   +++       + LCK   
Sbjct: 107 RDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVV-TYNSFIKGLCKCDR 165

Query: 201 --------------PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
                         PDV +YT +I  L    +LD+  R+ ++M       DV+ Y +LI 
Sbjct: 166 VDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLID 225

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           G CKGG V R   L   M + G   +   Y  L+  L   G +GKA D+L ++   G+  
Sbjct: 226 GFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTP 285

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D+  YN+ I GLC+ ++  KA  +F+  V+    P+ S+ + L+    +   +D+   L+
Sbjct: 286 DVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLV 345

Query: 367 AQ-------MEKLKFSVAAD------------------LEK--------FFEFLVG---K 390
            Q       ++ L ++V  D                  L++        F+  ++    K
Sbjct: 346 EQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCK 405

Query: 391 EERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
             +I  AL + +++  +   +V  +NIL+  L     +  A  +   M       + +++
Sbjct: 406 RRQIDKALQIHKQMLERNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTY 465

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD--- 507
              +    + G    A E   + ++   VP V  Y+ L  GL      + A +L      
Sbjct: 466 GTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLDV 525

Query: 508 ------CLGNVASGPTEFKYALTILHVCRSGE----------AEKIIE---------VLN 542
                  LG   +G  +    L +  +    E          + K+++         + +
Sbjct: 526 ALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAESLGKARGLFD 585

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              + G  P+  + + +I    K G LEEAR++F ++++
Sbjct: 586 RAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIFYSMKQ 624


>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
 gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
          Length = 834

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 190/407 (46%), Gaps = 6/407 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GRI + ++++E      C P++  Y  +I     +  +++  ++++++K       +  
Sbjct: 221 KGRIEDGIKLIESRWGKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQT 280

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + +L+ G CK G       L  EMK+ G+ ++  +Y  +I+     G   KA D LK++ 
Sbjct: 281 FGSLVNGFCKMGMFEAIDLLLLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMS 340

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           ++    DL  YN++I   C   + ++A KL E T++  LAP+  T  PL+    + G   
Sbjct: 341 ENCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYT 400

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
                L +M      V  D+  +   + G      +  AL + + +  +G      IYN+
Sbjct: 401 KATDYLIEMSTSGLEV--DMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNV 458

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           LM  L + G++  A  +  +M   N+  ++  ++  +   +  G++ EA +    IIE  
Sbjct: 459 LMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKG 518

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P V  YN + KG  K G +D A++ + D +      P  F ++  I    +      +
Sbjct: 519 LDPGVVGYNVMIKGFSKSGMMDNAILCI-DKMRRAHHVPDIFTFSTIIDGYVKQHNMNAV 577

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           +++   M ++ C PN V  +++I+G C+ G  + A K+F+ +R   L
Sbjct: 578 LKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGL 624



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 124/537 (23%), Positives = 229/537 (42%), Gaps = 45/537 (8%)

Query: 64  LPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFR--KNQFQWGPQVVTELSKLRRVTPDL 121
           L N K +S P     F+       I R + D  +  K+  +W   + T  ++      D+
Sbjct: 12  LRNCKPKSSPPFSIPFR-----GEIKRLVNDTIQILKSHEKWEQSLQTHFTESDIPIIDV 66

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ 181
              VL   N+  L  KFF WA K           N+L+  L+  +       +       
Sbjct: 67  THFVLDRINDVELGLKFFDWASK-----------NSLSGSLNGTSYSSLLKLLSRF---- 111

Query: 182 GRIAEMLEI-LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            R+   +E  LE+M+     P   A + ++   A    +D  L V+  + K L  +    
Sbjct: 112 -RVFPEIEFTLEEMKTKETIPTREALSDVLCAYADVGLVDKALEVYHGVVK-LHNSLPST 169

Query: 241 YV--TLIMGLCKGGRVVRGHELFREM--KENG--ILIDRAIYGVLIEGLVGEGKVGKACD 294
           Y   +L+  L K  R+   H+L+ EM  ++NG  I +D     ++++GL  +G++     
Sbjct: 170 YACNSLLNLLVKHRRIETAHQLYDEMIDRDNGDDICVDNYTTSIMVKGLCLKGRIEDGIK 229

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           L++     G   ++  YN++I G C+  + + AYKLF+        P   T   L+    
Sbjct: 230 LIESRWGKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFC 289

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS---- 410
           +MG  +    LL +M+    SV   +   +  ++    ++   +   + LK    +    
Sbjct: 290 KMGMFEAIDLLLLEMKDRGLSVNVQM---YNNIIDARYKLGFDIKAKDTLKEMSENCCEP 346

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            +  YN L+      GEV++A  L  +     L  N L+++  +  + + G+  +A +  
Sbjct: 347 DLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATD-- 404

Query: 471 NKIIEMSQVP---SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
             +IEMS       + +Y  L  GL   GE+D A+  +RD + N    P    Y + +  
Sbjct: 405 -YLIEMSTSGLEVDMISYGALIHGLVVAGEVDTALT-IRDRMMNRGILPDANIYNVLMNG 462

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           + + G+      +L EM  +   P+  + + ++ G  +HG L+EA+K+F  + E+ L
Sbjct: 463 LFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGL 519



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 180/422 (42%), Gaps = 19/422 (4%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+G + E  ++LE+  R    P+   YT ++     +           EM    +E D++
Sbjct: 360 SRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVDMI 419

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y  LI GL   G V     +   M   GIL D  IY VL+ GL  +GK+  A  +L ++
Sbjct: 420 SYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVMLTEM 479

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +D     D  +Y +++ G  R    D+A KLF++ ++  L P     N ++   ++ G M
Sbjct: 480 LDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMM 539

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYN 416
           DN    + +M +       D+  F   + G  K+  +   L +F  + K     +V  Y 
Sbjct: 540 DNAILCIDKMRRAHH--VPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYT 597

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+      GE K A  LF  MR   L+ + +++SI I    +   + +A      ++  
Sbjct: 598 SLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCKEAKLGKAVSYFELMLIN 657

Query: 477 SQVPSVAAYNCLTKGLCKIGEI----------DAAMMLVRDCLGN-VASGPTE--FKYAL 523
              P+ AA++ L  G                 + +  +  D     +  G T+    Y  
Sbjct: 658 KCTPNDAAFHYLVNGFTNTKATAVSREPNNLHENSRSMFEDFFSRMIGDGWTQKAAAYNC 717

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT-NLRER 582
            ++ +C+    +  +++ N+M   G   + V   A+I G+C  G  +E R + + +L E 
Sbjct: 718 ILICLCQQRMVKTALQLRNKMLAFGLCSDAVSFVALIHGICLEGNSKEWRNMISCDLNEG 777

Query: 583 KL 584
           +L
Sbjct: 778 EL 779



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/374 (21%), Positives = 154/374 (41%), Gaps = 35/374 (9%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           + L++M  N C+PD+  Y  +I    +   ++   ++ E+  +  +  + + Y  L+ G 
Sbjct: 334 DTLKEMSENCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGY 393

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           CK G   +  +   EM  +G+ +D   YG LI GLV  G+V  A  +   +++ G   D 
Sbjct: 394 CKQGEYTKATDYLIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDA 453

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
            IYN ++ GL +  +   A  +    +  ++APD      L+      G +D        
Sbjct: 454 NIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLD-------- 505

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEV 428
                     + +K F+ ++ K       LD            V  YN+++    + G +
Sbjct: 506 ----------EAKKLFQLIIEK------GLD----------PGVVGYNVMIKGFSKSGMM 539

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
             A+    KMR  +   +  +FS  I  +V+  ++    +    +++ +  P+V  Y  L
Sbjct: 540 DNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSL 599

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
             G C+ GE   A  L    + +    P+   Y++ I   C+  +  K +     M    
Sbjct: 600 INGYCRKGETKMAEKLF-SMMRSHGLKPSVVTYSILIGSFCKEAKLGKAVSYFELMLINK 658

Query: 549 CPPNEVICSAIISG 562
           C PN+     +++G
Sbjct: 659 CTPNDAAFHYLVNG 672



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 133/333 (39%), Gaps = 46/333 (13%)

Query: 96  FRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVEN-----NPTLASKFFHWAGKQKGYKH 150
           F+K +      ++TE+   + + PD       V+      N   A K F     +KG   
Sbjct: 464 FKKGKLSMAKVMLTEMLD-QNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLI-IEKGLDP 521

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
               YN +    S++ +   A                +  ++KMRR    PD+F ++ +I
Sbjct: 522 GVVGYNVMIKGFSKSGMMDNA----------------ILCIDKMRRAHHVPDIFTFSTII 565

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
                + N++A L+++  M K   + +V+ Y +LI G C+ G      +LF  M+ +G+ 
Sbjct: 566 DGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLK 625

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ------- 323
                Y +LI     E K+GKA    + ++ +    +   ++ ++ G    K        
Sbjct: 626 PSVVTYSILIGSFCKEAKLGKAVSYFELMLINKCTPNDAAFHYLVNGFTNTKATAVSREP 685

Query: 324 ---FDKAYKLFE----VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
               + +  +FE      + D      +  N +L+C  +   +    +L  +M  L F +
Sbjct: 686 NNLHENSRSMFEDFFSRMIGDGWTQKAAAYNCILICLCQQRMVKTALQLRNKM--LAFGL 743

Query: 377 AADLEKFFEFLVG-------KEERIMMALDVFE 402
            +D   F   + G       KE R M++ D+ E
Sbjct: 744 CSDAVSFVALIHGICLEGNSKEWRNMISCDLNE 776


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 200/414 (48%), Gaps = 12/414 (2%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + +M ++ + M  +   PD++ +  +I+  A    LD  + ++ EM+   V+  V+
Sbjct: 373 TKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVV 432

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y+T+I  LC+ G++    E F +M + G++ D+  Y  LI+G    G + KA +L+ ++
Sbjct: 433 TYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEI 492

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +++G R D+  + SII  LC++ +   A  +F++TV   L PD    N L+     +G+M
Sbjct: 493 MNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKM 552

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           +   ++   M  +   +  ++  +   + G  K  RI   L +F E+  KG   S  +YN
Sbjct: 553 EKALRVFDAM--VSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYN 610

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           I++  L E G    A   F +M    + +N  ++SI ++   ++    EA     ++  M
Sbjct: 611 IIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAM 670

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA-SG--PTEFKYALTILHVCRSGE 533
           +    +   N +  G+ +   ++ A    +D   +++ SG  P    Y++ I ++ + G 
Sbjct: 671 NVKIDIITLNTMIAGMFQTRRVEEA----KDLFASISRSGLVPCAVTYSIMITNLLKEGL 726

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
            E+  ++ + M   GC P+  + + ++  + K   +  A    + + ER    E
Sbjct: 727 VEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLE 780



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/459 (24%), Positives = 204/459 (44%), Gaps = 52/459 (11%)

Query: 183 RIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAE---RNLDACLRVWEEMKKDLVEADV 238
           R  E L+IL      L C PDVF+Y  +++ L  +      D  LR+  E    +   DV
Sbjct: 163 RTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAE-GGTVCSPDV 221

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           +AY T+I G  K G V +  +LF+EM + GI  D   Y  ++  L     + KA   L+ 
Sbjct: 222 VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQ 281

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +V+ G   D   YN++I G     Q+ +A ++F+   +  + PD   +N L+    + G+
Sbjct: 282 MVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGK 341

Query: 359 MD---NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYS-SV 412
           +    + F  +A   +       D+  +   L G   +  ++   D+F+ + G G +  +
Sbjct: 342 IKEARDVFDTMAMKGQ-----NPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDI 396

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             +N+L+ A    G + KA+ +F +MR   ++ + +++   I      G + +A E  N+
Sbjct: 397 YTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQ 456

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG---------------------- 510
           +I+   VP   AY+CL +G C  G +  A  L+ + +                       
Sbjct: 457 MIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGR 516

Query: 511 ------------NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
                       NV   P    Y + +   C  G+ EK + V + M   G  PN V    
Sbjct: 517 VMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGT 576

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +++G CK G ++E   +F  + ++ +  + +TI+Y+ I+
Sbjct: 577 LVNGYCKIGRIDEGLSLFREMLQKGI--KPSTILYNIII 613



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 177/387 (45%), Gaps = 13/387 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE- 259
           P  + Y  ++         +  L  + ++ +  +  D +    L+ G C+  R     + 
Sbjct: 111 PTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDI 170

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY--RADLGIYNSIIGG 317
           L     E G + D   Y +L++ L  +GK G+A DLL+ + + G     D+  YN++I G
Sbjct: 171 LLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDG 230

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
             +    +KA  LF+  VQ  + PD  T + ++    +   MD     L QM  +   V 
Sbjct: 231 FFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQM--VNKGVL 288

Query: 378 ADLEKFFEFLVGKEE--RIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYL 434
            D   +   + G     +   A+ VF+E++ +     V   N LMG+L + G++K+A  +
Sbjct: 289 PDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDV 348

Query: 435 FGK--MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
           F    M+G N +V   S++I +  +   G +++  +  + ++     P +  +N L K  
Sbjct: 349 FDTMAMKGQNPDV--FSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAY 406

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
              G +D AM++  + + +    P    Y   I  +CR G+ +  +E  N+M  +G  P+
Sbjct: 407 ANCGMLDKAMIIFNE-MRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPD 465

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNL 579
           +     +I G C HG+L +A+++ + +
Sbjct: 466 KYAYHCLIQGFCTHGSLLKAKELISEI 492



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 184/443 (41%), Gaps = 47/443 (10%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G+  E + + ++MRR    PDV A   ++  L     +     V++ M       DV 
Sbjct: 303 STGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 362

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y  ++ G    G +V   +LF  M  +GI  D   + VLI+     G + KA  +  ++
Sbjct: 363 SYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEM 422

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D G +  +  Y ++I  LCR+ + D A + F   +   + PD    + L+      G +
Sbjct: 423 RDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSL 482

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKG-YSSVPIYN 416
               +L++++  +   +  D+  F   +  + K  R+M A ++F+     G +    +YN
Sbjct: 483 LKAKELISEI--MNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYN 540

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           +LM     +G+++KAL +F  M    +E                                
Sbjct: 541 MLMDGYCLVGKMEKALRVFDAMVSAGIE-------------------------------- 568

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P+V  Y  L  G CKIG ID  + L R+ L      P+   Y + I  +  +G    
Sbjct: 569 ---PNVVGYGTLVNGYCKIGRIDEGLSLFREMLQK-GIKPSTILYNIIIDGLFEAGRTVP 624

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIV- 592
                +EMT+ G   N+   S ++ G+ K+   +EA  +F  LR   +   +   NT++ 
Sbjct: 625 AKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIA 684

Query: 593 --YDEILIEHMKKKTADLVLSGL 613
             +    +E  K   A +  SGL
Sbjct: 685 GMFQTRRVEEAKDLFASISRSGL 707


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 198/450 (44%), Gaps = 58/450 (12%)

Query: 116 RVTPDLVAEVLK---VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLS--------R 164
           +++P+ V  VL+   +   P +A +FF WAGKQK Y H    + +L   L+        R
Sbjct: 111 KLSPNFVTFVLQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIR 170

Query: 165 NNLFR-----------AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
              F            AA+ + +   + G + E+L +  +M+ N   P ++ Y  ++  L
Sbjct: 171 LVFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGL 230

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
                +++  +V+E M    +  D + Y  +I G CK G++ +  E FR+M+   +  D+
Sbjct: 231 VNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDK 290

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             Y  LI+    E        L  ++ + G       Y+ +IGGLC+ ++  +AY +FE 
Sbjct: 291 ITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFET 350

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA--------------- 378
             Q     + +    L+   ++ G M+   +L  +M+   F   A               
Sbjct: 351 MNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGR 410

Query: 379 --DLEKFFEFL------------------VGKEERIMMALDVFEELKGKGYSSVPI-YNI 417
             D  + F+F                   +GK  RI  A ++FEE+  KG +     YN 
Sbjct: 411 LDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNA 470

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++ AL + G++ +AL LFG+M     +    +F+I I    +     EA +  +K+I+  
Sbjct: 471 IIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKG 530

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
             P+VA++  L  GLC  G++  A  ++ D
Sbjct: 531 ITPTVASFRALAIGLCLCGKVARACKILDD 560



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 140/331 (42%), Gaps = 37/331 (11%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q +  E   + E M +  C+ +V  YTA+I   +   +++  +R++E MK +  E D + 
Sbjct: 338 QRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVT 397

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ GLCK GR+  G ELF   +  G+ I+   Y  LI+GL   G++  A +L +++ 
Sbjct: 398 YSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMS 457

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G   D   YN+II  L +  + D+A  LF    ++       T   L+         D
Sbjct: 458 EKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILI---------D 508

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
             FK     E +KF                          ++++  KG + +V  +  L 
Sbjct: 509 GLFKEHKNEEAIKF--------------------------WDKMIDKGITPTVASFRALA 542

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L   G+V +A  +   +  + + +   +F   I    ++  I EAC+  + I++  + 
Sbjct: 543 IGLCLCGKVARACKILDDLAPMGI-IPETAFEDMINTLCKAQRIKEACKLADGIVDRGRE 601

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
                   L   L K G  D  + L+   +G
Sbjct: 602 IPGRIRTVLINALRKAGNSDLVIKLMHSKIG 632


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 182/375 (48%), Gaps = 8/375 (2%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           M   G  A  L++  KM     K  V  Y+ +I  L  + NLD  L ++ EM+   ++AD
Sbjct: 219 MCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKAD 278

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+AY ++I GLC  GR   G ++ REM    I+ +   +  LI+  V EGK+ +A +L  
Sbjct: 279 VVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYN 338

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           ++V  G   D   Y+S+I G C+  +  +A ++ ++ V     P+  T + L+    +  
Sbjct: 339 EMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAK 398

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPI 414
           R+DN  +L  ++      + AD   +   + G  +  ++ +A ++F+E+  +G   SV  
Sbjct: 399 RVDNGMRLFCEISSK--GLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVT 456

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y IL+  L + GE++KAL +F KM+   + +    ++I I     +  + +A      + 
Sbjct: 457 YGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLS 516

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI-LHVCRSGE 533
                P V  YN +  GLCK G +  A ML R  +      P++  Y + I  H+  SG 
Sbjct: 517 VKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRK-MKEDGCAPSDCTYNILIRAHLGGSGV 575

Query: 534 AEKIIEVLNEMTQEG 548
               +E++ EM   G
Sbjct: 576 ISS-VELIEEMKMRG 589



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 195/410 (47%), Gaps = 18/410 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR++E + ++++M     +P+V     +I  L  +  +   L + + M K   EA+ + 
Sbjct: 152 EGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEIT 211

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  ++  +CK G      +LFR+M+E  I      Y ++I+ L  +G +  A  L  ++ 
Sbjct: 212 YGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEME 271

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G +AD+  Y+SIIGGLC   ++D   K+    +  ++ P+  T + L+    + G++ 
Sbjct: 272 MKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLL 331

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
              +L  +M  +   +A D   +   + G  KE R+  A  + + +  KG   ++  Y+I
Sbjct: 332 EAKELYNEM--VARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSI 389

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ +  +   V   + LF ++    L  ++++++  +Q   +SG +  A E   +++   
Sbjct: 390 LINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRG 449

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLV------RDCLGNVASGPTEFKYALTILHVCRS 531
             PSV  Y  L  GLC  GE+  A+ +       R  LG          Y + I  +C +
Sbjct: 450 VPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGI-------YNIIIHGMCNA 502

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            + +    +   ++ +G  P+ +  + +I G+CK G+L EA  +F  ++E
Sbjct: 503 SKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKE 552



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 185/403 (45%), Gaps = 6/403 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ E +++ E M ++   P +  ++ +   +A  +  D  L   +EM  + +E ++    
Sbjct: 49  KVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMN 108

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            +I   C+  +++    +     + G   +   +  LI G   EG+V +A  L+  +V+ 
Sbjct: 109 IMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEM 168

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
            YR ++   N++I GLC   +  +A  L +  V+     +  T  P+L    + G     
Sbjct: 169 KYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALA 228

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGY-SSVPIYNILM 419
             L  +ME+   S+ A + ++   +  + K+  +  AL +F E++ KG  + V  Y+ ++
Sbjct: 229 LDLFRKMEER--SIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSII 286

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
           G L   G       +  +M G N+  N ++FS  I   V+ G +LEA E +N+++     
Sbjct: 287 GGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIA 346

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P    Y+ L  G CK   +  A  ++ D + +    P    Y++ I   C++   +  + 
Sbjct: 347 PDTITYSSLIDGFCKENRLGEANQML-DLMVSKGCEPNIVTYSILINSYCKAKRVDNGMR 405

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           +  E++ +G   + V  + ++ G C+ G L  A+++F  +  R
Sbjct: 406 LFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSR 448



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 153/326 (46%), Gaps = 37/326 (11%)

Query: 99  NQFQW--GPQVVTELSKLRRVTPDLVA-----EVLKVENNPTLASKFFHWAGKQKGYKHN 151
           N  +W  G +++ E+   R + P++V      +V  V+    L +K  +     +G   +
Sbjct: 291 NDGRWDDGAKMLREMIG-RNIIPNVVTFSALIDVF-VKEGKLLEAKELYNEMVARGIAPD 348

Query: 152 FASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIR 211
             +Y++L     + N    A+Q+ +LM S+G                C+P++  Y+ +I 
Sbjct: 349 TITYSSLIDGFCKENRLGEANQMLDLMVSKG----------------CEPNIVTYSILIN 392

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
                + +D  +R++ E+    + AD + Y TL+ G C+ G++    ELF+EM   G+  
Sbjct: 393 SYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPP 452

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
               YG+L++GL   G++ KA ++ + +  S     +GIYN II G+C   + D A+ LF
Sbjct: 453 SVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLF 512

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRM---DNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
                  + PD  T N ++    + G +   D  F+      K+K    A  +  +  L+
Sbjct: 513 CSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFR------KMKEDGCAPSDCTYNILI 566

Query: 389 GKE---ERIMMALDVFEELKGKGYSS 411
                   ++ ++++ EE+K +G+++
Sbjct: 567 RAHLGGSGVISSVELIEEMKMRGFAA 592



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 37/199 (18%)

Query: 429 KKALYLF---GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           +K L+ F   G+      E N+++FS  I      G + EA    ++++EM   P+V   
Sbjct: 118 RKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTV 177

Query: 486 NCLTKGLCKIGEIDAAMMLV--------------------RDC-LGNVASGPTEFK---- 520
           N L  GLC  G +  A++L+                    R C  GN A     F+    
Sbjct: 178 NTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEE 237

Query: 521 ---------YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
                    Y++ I  +C+ G  +  + + NEM  +G   + V  S+II G+C  G  ++
Sbjct: 238 RSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDD 297

Query: 572 ARKVFTNLRERKLLTEANT 590
             K+   +  R ++    T
Sbjct: 298 GAKMLREMIGRNIIPNVVT 316



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 63/127 (49%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G + + LEI EKM+++     +  Y  +I  +     +D    ++  +    V+ DV+ 
Sbjct: 467 NGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLT 526

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I GLCK G +     LFR+MKE+G       Y +LI   +G   V  + +L++++ 
Sbjct: 527 YNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEEMK 586

Query: 301 DSGYRAD 307
             G+ AD
Sbjct: 587 MRGFAAD 593


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 123/570 (21%), Positives = 251/570 (44%), Gaps = 51/570 (8%)

Query: 27  TVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLS 86
           + YG +FS+    +   S  E  +S   ++++ D   L  + T+S P  P+     R  S
Sbjct: 22  SCYGRVFSSVSDGKGKVSYRERLRSGIVDIKEDDAVDLFQEMTRSRPR-PRLIDFSRLFS 80

Query: 87  PIAR-----FITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHW 141
            +AR      + D  ++ + +     +  LS    +  +      K+       S  F  
Sbjct: 81  VVARTKQYDLVLDLCKQMELKGIAHNLYTLS----IMINCCCRCRKL-------SLAFSA 129

Query: 142 AGK--QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRN 197
            GK  + GY+ +  +++ L    CL                  +GR++E LE++++M   
Sbjct: 130 MGKIIKLGYEPDTVTFSTLINGLCL------------------EGRVSEALELVDRMVEM 171

Query: 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
             KP +    A++  L     +   + + + M +   + + + Y  ++  +CK G+    
Sbjct: 172 GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
            EL R+M+E  I +D   Y ++I+GL  +G +  A +L  ++   G++AD+ IY ++I G
Sbjct: 232 MELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRG 291

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
            C   ++D   KL    ++  + PD    + L+ C  + G++    +L  +M  ++  ++
Sbjct: 292 FCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEM--IQRGIS 349

Query: 378 ADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL 434
            D   +   + G  KE ++  A  + + +  KG   ++  +NIL+    +   +   L L
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLEL 409

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           F KM    +  ++++++  IQ   E G +  A E   +++     P + +Y  L  GLC 
Sbjct: 410 FRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCD 469

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFK---YALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
            GE + A+ +       +     E     Y + I  +C + + +   ++   +  +G  P
Sbjct: 470 NGEPEKALEIFE----KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKP 525

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           +    + +I G+CK G+L EA  +F  + E
Sbjct: 526 DVKTYNIMIGGLCKKGSLSEADLLFRKMEE 555



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 190/402 (47%), Gaps = 6/402 (1%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + +++ ++M R+  +P +  ++ +  V+A  +  D  L + ++M+   +  ++     +I
Sbjct: 55  DAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMI 114

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              C+  ++        ++ + G   D   +  LI GL  EG+V +A +L+  +V+ G++
Sbjct: 115 NCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK 174

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
             L   N+++ GLC   +   A  L +  V+    P+  T  P+L    + G+     +L
Sbjct: 175 PTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMEL 234

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGAL 422
           L +ME+ K  +  D  K+   + G  K+  +  A ++F E++ KG+ + + IY  L+   
Sbjct: 235 LRKMEERK--IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGF 292

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
              G       L   M    +  + ++FS  I C V+ G + EA E H ++I+    P  
Sbjct: 293 CYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDT 352

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             Y  L  G CK  ++D A  ++ D + +   GP    + + I   C++   +  +E+  
Sbjct: 353 VTYTSLIDGFCKENQLDKANHML-DLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFR 411

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           +M+  G   + V  + +I G C+ G LE A+++F  +  R++
Sbjct: 412 KMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRV 453



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 137/307 (44%), Gaps = 26/307 (8%)

Query: 102 QW--GPQVVTELSKLRRVTPDLVAEVLKVE----NNPTLASKFFHWAGKQKGYKHNFASY 155
           +W  G +++ ++ K R++TPD+VA    ++          ++  H    Q+G   +  +Y
Sbjct: 297 RWDDGAKLLRDMIK-RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTY 355

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEMLEILEKMRR 196
            +L     + N    A+ + +LM S+G                    I + LE+  KM  
Sbjct: 356 TSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSL 415

Query: 197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
                D   Y  +I+       L+    +++EM    V  D+++Y  L+ GLC  G   +
Sbjct: 416 RGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEK 475

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
             E+F +++++ + +D  IY ++I G+    KV  A DL   L   G + D+  YN +IG
Sbjct: 476 ALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIG 535

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           GLC+     +A  LF    +D  +P+  T N L+      G      KL+ ++++  FSV
Sbjct: 536 GLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSV 595

Query: 377 AADLEKF 383
            A   K 
Sbjct: 596 DASTVKM 602



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 135/319 (42%), Gaps = 8/319 (2%)

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A DL +++  S  R  L  ++ +   + R KQ+D    L +      +A +  T++ ++ 
Sbjct: 56  AVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMIN 115

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY 409
           CC    ++   F  + ++ KL +    D   F   + G   E R+  AL++ + +   G+
Sbjct: 116 CCCRCRKLSLAFSAMGKIIKLGYE--PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173

Query: 410 SSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
               I  N L+  L   G+V  A+ L  +M     + N +++   ++   +SG    A E
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAME 233

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
              K+ E         Y+ +  GLCK G +D A  L  + +           Y   I   
Sbjct: 234 LLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE-MEIKGFKADIIIYTTLIRGF 292

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C +G  +   ++L +M +    P+ V  SA+I    K G L EA ++   + +R +    
Sbjct: 293 CYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGI--SP 350

Query: 589 NTIVYDEILIEHMKKKTAD 607
           +T+ Y  ++    K+   D
Sbjct: 351 DTVTYTSLIDGFCKENQLD 369


>gi|357142282|ref|XP_003572519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 706

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 203/419 (48%), Gaps = 20/419 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA-AERNLDACLRVWEEMKKDLVEADVMA 240
           GR+ E L +   M    CKPD+F+Y A+++ L  AER  DA   + E ++KD    D + 
Sbjct: 274 GRVKEALHLFSCMP---CKPDIFSYNAVLKGLCRAERWEDAGELITEMVRKD-CSPDEVT 329

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + T+I  LC  G V    E+  +M + G   D   Y  LI     +G V  A +LL+ + 
Sbjct: 330 FNTVISFLCHKGLVDCALEVVDQMPKYGRKPDNFTYSALINAFSEQGCVEDALELLRSMP 389

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            S    +   Y S++ GLCR  Q++   +L    V++D APD      ++ C  + G +D
Sbjct: 390 CS---PNTVCYKSVLKGLCRDGQWEDVGQLIGEMVRNDCAPDEMVFGLIIDCLCQRGLVD 446

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGYSSVPIYNIL 418
              ++L ++    +  + D+  +   L G  E  R+  +L +F+ +  K   +   YN +
Sbjct: 447 CGLEVLQEVP--NYGCSPDVVMYTSLLNGFAEYGRVDDSLKLFKSMTCK--PNTVTYNYV 502

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L ++   + A  L  +M G     N ++FSI I    + G +  A +   K+     
Sbjct: 503 LMGLCKVELWEDAGKLIDEMVGQECPPNEMTFSILISSLCQKGLVECAIDVFEKMQMYGC 562

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P+V  Y+ L  GL + G +D A+ L    L N++       Y+  +  +CR+   E   
Sbjct: 563 TPNVIIYSTLNNGLSEKGCVDNALKL----LNNMSCKADTICYSSALKGLCRAELWEDAG 618

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           E++ EM ++ CPP+EV  S II+ +C+ G +E A +V ++L  +   T  N ++Y  ++
Sbjct: 619 ELIVEMFRKDCPPDEVTFSIIITNLCQQGFVEYATEV-SDLMLKYECT-PNIVIYSSLI 675



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 190/409 (46%), Gaps = 64/409 (15%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G +   LE++++M +   KPD F Y+A+I   + +  ++  L +   M       + + 
Sbjct: 340 KGLVDCALEVVDQMPKYGRKPDNFTYSALINAFSEQGCVEDALELLRSMP---CSPNTVC 396

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +++ GLC+ G+     +L  EM  N    D  ++G++I+ L   G V    ++L+++ 
Sbjct: 397 YKSVLKGLCRDGQWEDVGQLIGEMVRNDCAPDEMVFGLIIDCLCQRGLVDCGLEVLQEVP 456

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G   D+ +Y S++ G     + D + KLF+        P+  T N +L+   ++   +
Sbjct: 457 NYGCSPDVVMYTSLLNGFAEYGRVDDSLKLFKSMT---CKPNTVTYNYVLMGLCKVELWE 513

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYN 416
           +  KL+ +M   +       E  F  L+    ++  +  A+DVFE+++  G + +V IY+
Sbjct: 514 DAGKLIDEMVGQE---CPPNEMTFSILISSLCQKGLVECAIDVFEKMQMYGCTPNVIIYS 570

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L   L E G V  AL L   M   + + +++ +S A+                      
Sbjct: 571 TLNNGLSEKGCVDNALKLLNNM---SCKADTICYSSAL---------------------- 605

Query: 477 SQVPSVAAYNCLTKGLCKIGEI--DAAMMLV----RDCLGNVASGPTEFKYALTILHVCR 530
                        KGLC+  E+  DA  ++V    +DC       P E  +++ I ++C+
Sbjct: 606 -------------KGLCR-AELWEDAGELIVEMFRKDC------PPDEVTFSIIITNLCQ 645

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            G  E   EV + M +  C PN VI S++I+G  +HG LE+A K+  ++
Sbjct: 646 QGFVEYATEVSDLMLKYECTPNIVIYSSLINGFSEHGHLEDALKLLRSM 694



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 191/432 (44%), Gaps = 52/432 (12%)

Query: 201 PDVFAYTAMIRVL-AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           P V   T +I+ L AA R  DA     E + +    AD + + TL+ G C+ GR+     
Sbjct: 91  PAVVPCTLLIKKLCAAGRLADA-----EGVLRASEAADAVDHNTLVAGYCRAGRLADAER 145

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           + R +  +G   D   Y  LI G    G++  A  L+  +  +    +   YN+++ GLC
Sbjct: 146 MLRSLAASGA-ADVVTYNTLIAGYCRGGRLEDARLLVASMPPA---PNSYAYNTLLKGLC 201

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA- 378
             KQ+  A +L E   ++D  PD  T   L+    + G +D    +L +M K   +  A 
Sbjct: 202 SAKQWGDAEELVEEMTRNDSPPDDLTFGMLIHSFCQSGLVDRAMGILDRMSKCGCTPGAI 261

Query: 379 -----------------------------DLEKFFEFLVG--KEERIMMALDVFEELKGK 407
                                        D+  +   L G  + ER   A ++  E+  K
Sbjct: 262 VYNEIISCFAELGRVKEALHLFSCMPCKPDIFSYNAVLKGLCRAERWEDAGELITEMVRK 321

Query: 408 GYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
             S   + +N ++  L   G V  AL +  +M     + ++ ++S  I    E G + +A
Sbjct: 322 DCSPDEVTFNTVISFLCHKGLVDCALEVVDQMPKYGRKPDNFTYSALINAFSEQGCVEDA 381

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
            E    +  M   P+   Y  + KGLC+ G+ +    L+ + + N  + P E  + L I 
Sbjct: 382 LE---LLRSMPCSPNTVCYKSVLKGLCRDGQWEDVGQLIGEMVRNDCA-PDEMVFGLIID 437

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
            +C+ G  +  +EVL E+   GC P+ V+ +++++G  ++G ++++ K+F     + +  
Sbjct: 438 CLCQRGLVDCGLEVLQEVPNYGCSPDVVMYTSLLNGFAEYGRVDDSLKLF-----KSMTC 492

Query: 587 EANTIVYDEILI 598
           + NT+ Y+ +L+
Sbjct: 493 KPNTVTYNYVLM 504



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 161/395 (40%), Gaps = 52/395 (13%)

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           AY TL+ GLC   +     EL  EM  N    D   +G+LI      G V +A  +L  +
Sbjct: 192 AYNTLLKGLCSAKQWGDAEELVEEMTRNDSPPDDLTFGMLIHSFCQSGLVDRAMGILDRM 251

Query: 300 VDSG--------------------------------YRADLGIYNSIIGGLCRVKQFDKA 327
              G                                 + D+  YN+++ GLCR ++++ A
Sbjct: 252 SKCGCTPGAIVYNEIISCFAELGRVKEALHLFSCMPCKPDIFSYNAVLKGLCRAERWEDA 311

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL-----KFSVAADLEK 382
            +L    V+ D +PD  T N ++      G +D   +++ QM K       F+ +A +  
Sbjct: 312 GELITEMVRKDCSPDEVTFNTVISFLCHKGLVDCALEVVDQMPKYGRKPDNFTYSALINA 371

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGL 441
           F E   G  E      D  E L+    S   + Y  ++  L   G+ +    L G+M   
Sbjct: 372 FSE--QGCVE------DALELLRSMPCSPNTVCYKSVLKGLCRDGQWEDVGQLIGEMVRN 423

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
           +   + + F + I C  + G +    E   ++      P V  Y  L  G  + G +D +
Sbjct: 424 DCAPDEMVFGLIIDCLCQRGLVDCGLEVLQEVPNYGCSPDVVMYTSLLNGFAEYGRVDDS 483

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           + L +    ++   P    Y   ++ +C+    E   ++++EM  + CPPNE+  S +IS
Sbjct: 484 LKLFK----SMTCKPNTVTYNYVLMGLCKVELWEDAGKLIDEMVGQECPPNEMTFSILIS 539

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
            +C+ G +E A  VF  ++        N I+Y  +
Sbjct: 540 SLCQKGLVECAIDVFEKMQMYG--CTPNVIIYSTL 572


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 115/449 (25%), Positives = 199/449 (44%), Gaps = 31/449 (6%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ +  ++L+KM    C P    YTA++  L     LD  + + E+M +      +  Y 
Sbjct: 91  RVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYT 150

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            +I GL K GRV     +F +M  NG   D  +Y  LI GL   GK+ +A   L  +V++
Sbjct: 151 VVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVEN 210

Query: 303 G----YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           G       D+ I+N +I  LC     + A   F+  + D L     T NPL+    +  R
Sbjct: 211 GCARGVEPDVVIHNLVIRQLCASGNLEDALAYFD-ELDDSLDLTHFTFNPLVAALCKAER 269

Query: 359 MDNFFKLLAQMEKLK-----FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSV 412
            +     + +M + +     F+  + ++ F      K  R+  AL   +E   +G+    
Sbjct: 270 TEEAIAFVKKMSERRCFPTLFTYTSLVDGFL-----KLGRLDEALLQLKEAVERGFIPDA 324

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             Y  ++  L ++G V++    F +MR    E ++++++  I   +++  I +A   + +
Sbjct: 325 VTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQ 384

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILH 527
           +++   V S   YN +  GLCK G +  A      M  R C+  V +      Y+  +  
Sbjct: 385 MLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVT------YSALMDG 438

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
            C  G     +E+   M   GC PN V  + II G+C+ G L +A   F  L +R+L  +
Sbjct: 439 FCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPD 498

Query: 588 ANTIVYDEILIEHMKKKTADLVLSGLKFF 616
             T  ++  L  H   +  D V  G++ F
Sbjct: 499 VYT--FNSFL--HGLCQRLDTVGDGVELF 523



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 184/407 (45%), Gaps = 6/407 (1%)

Query: 182 GRIAEMLEILEKMRRNLC----KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           G++ E L  L +M  N C    +PDV  +  +IR L A  NL+  L  ++E+  D ++  
Sbjct: 195 GKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELD-DSLDLT 253

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
              +  L+  LCK  R        ++M E         Y  L++G +  G++ +A   LK
Sbjct: 254 HFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLK 313

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           + V+ G+  D   Y SII GLC++ + ++  + F         PD  T   L+    +  
Sbjct: 314 EAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAK 373

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYN 416
            +    ++  QM +    V+          + K  R+  A   F  ++ +G  ++V  Y+
Sbjct: 374 MIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYS 433

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            LM      G V  A+ LF +M     E N +S++I I+    +G + +A     K+++ 
Sbjct: 434 ALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQR 493

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P V  +N    GLC+  +     + + + + +  + P    Y++ +  +CR+G  E 
Sbjct: 494 RLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEV 553

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            +E+ +EM   G  P+ V+ + +I  +C  G ++EA +VF  L  R 
Sbjct: 554 TLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRS 600



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 185/420 (44%), Gaps = 10/420 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++   + +L++M    C PD+ A+T +I  L  E+ LD    V E   +   E D + Y
Sbjct: 23  GQLDRAMLLLDEMP---CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTY 79

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
              I GLCK  RV    +L ++M E   L     Y  L++GL+  G++ +A  +L+ +V+
Sbjct: 80  NVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVE 139

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G    L  Y  +I GL +  + ++A ++F   + +   PD      L+   A++G++D 
Sbjct: 140 KGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDE 199

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKE----ERIMMALDVFEELKGKGYSSVPIYNI 417
               L QM +   +   + +     LV ++      +  AL  F+EL      +   +N 
Sbjct: 200 ALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTHFTFNP 259

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ AL +    ++A+    KM          +++  +   ++ G + EA     + +E  
Sbjct: 260 LVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERG 319

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
            +P    Y  +  GLCK+G ++       + + N    P    YA  I    ++    K 
Sbjct: 320 FIPDAVTYTSIIDGLCKLGRVEEGCERFHE-MRNRGYEPDAVTYAALIDGFMKAKMIPKA 378

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             V  +M Q G   + V  + I+ G+CK G + EA   F  + ER  +  A  + Y  ++
Sbjct: 379 HRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCV--ATVVTYSALM 436



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 142/374 (37%), Gaps = 78/374 (20%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E  E   +MR    +PD   Y A+I      + +    RV+ +M +       + Y
Sbjct: 338 GRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTY 397

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++ GLCK GRV   +  F  M+E G +     Y  L++G   EG V  A +L + ++D
Sbjct: 398 NIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLD 457

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   +L  YN II GLCR  +  KAY  FE  +Q  L P                    
Sbjct: 458 RGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCP-------------------- 497

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM---ALDVFEELKGKGYS-SVPIYNI 417
                            D+  F  FL G  +R+      +++FE +  +G S ++  Y+I
Sbjct: 498 -----------------DVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSI 540

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           LM  +   G ++  L +F +M                                   +   
Sbjct: 541 LMDGICRAGGLEVTLEIFHEM-----------------------------------VSRG 565

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P V  +N L + LC  G +D A+ + R+     A     +   L  L  C   E  ++
Sbjct: 566 VAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAPDAWSYWSLLDALSRCERMEEARL 625

Query: 538 IEVLNEMTQEGCPP 551
           +     M  +GC P
Sbjct: 626 LSF--HMKLQGCAP 637



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 151/328 (46%), Gaps = 9/328 (2%)

Query: 182 GRIAE-MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           GR+ E +L++ E + R    PD   YT++I  L     ++     + EM+    E D + 
Sbjct: 303 GRLDEALLQLKEAVERGFI-PDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVT 361

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G  K   + + H ++R+M ++G ++    Y ++++GL   G+V +A      + 
Sbjct: 362 YAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAME 421

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G  A +  Y++++ G C       A +LF   +     P+  + N ++      G++ 
Sbjct: 422 ERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLA 481

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM---ALDVFEELKGKGYS-SVPIYN 416
             +    ++  L+  +  D+  F  FL G  +R+      +++FE +  +G S ++  Y+
Sbjct: 482 KAYFYFEKL--LQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYS 539

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           ILM  +   G ++  L +F +M    +  + + F+  I+    +G + EA E   + +E 
Sbjct: 540 ILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRE-LER 598

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMML 504
              P   +Y  L   L +   ++ A +L
Sbjct: 599 RSAPDAWSYWSLLDALSRCERMEEARLL 626



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 117/285 (41%), Gaps = 44/285 (15%)

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
           D  +  +++ GLC+  Q D+A  L  E+    D+      +N L   C E  R+D  F +
Sbjct: 8   DTRVCTALLNGLCKTGQLDRAMLLLDEMPCSPDMVAFTVVINGL---CRE-KRLDEAFSV 63

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEI 425
           L +      +V A  E  +                              YN+ +  L + 
Sbjct: 64  LER------AVRAGCEPDY----------------------------VTYNVFIDGLCKA 89

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
             V  A  L  KM        +++++  +   +++G + EA     +++E    P++  Y
Sbjct: 90  ERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTY 149

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
             +  GL K G ++ A  +  D LGN    P  F Y   I  + + G+ ++ +  LN+M 
Sbjct: 150 TVVIDGLSKAGRVEEARRIFVDMLGN-GCRPDAFVYTALISGLAKIGKLDEALVYLNQMV 208

Query: 546 QEGCP----PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
           + GC     P+ VI + +I  +C  G LE+A   F  L +   LT
Sbjct: 209 ENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLT 253



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 6/127 (4%)

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L  GLCK G++D AM+L    L  +   P    + + I  +CR    ++   VL    + 
Sbjct: 15  LLNGLCKTGQLDRAMLL----LDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRA 70

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           GC P+ V  +  I G+CK   +++A ++   + E+K L    T+ Y  ++   +K    D
Sbjct: 71  GCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCL--PTTVTYTALVDGLLKAGRLD 128

Query: 608 LVLSGLK 614
             ++ L+
Sbjct: 129 EAMAILE 135


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 208/449 (46%), Gaps = 43/449 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ + L+++E M +  C P V  YTA++  L     +D    +++EM      AD +A
Sbjct: 198 EGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALA 257

Query: 241 YVTLIMGLCKGGRV---------VRGH-----------------------ELFREMKENG 268
           YV+L+ G CK  R          +RG                         +F +M   G
Sbjct: 258 YVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRG 317

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
            + +   Y ++++GL   GKV +A   L+ +  +G   D+  YN II GL +  +  +A 
Sbjct: 318 CVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEAR 377

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
           ++ +  +Q  + PD  T N L+    +  R D+   +L  M  +K  V  D   +   + 
Sbjct: 378 QVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNM--IKAGVDPDNVTYNTLIS 435

Query: 389 G--KEERIMMALDVFEELKGKG--YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
           G  +  R+  A ++  E+   G   S+   YN ++  L + G +K+AL L   M G  +E
Sbjct: 436 GLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVE 495

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            N+++++I I    + G + EA    + + EM  +    +Y  +  GLCK  ++D A  L
Sbjct: 496 ANTVTYNIFIDRLCKEGRLDEA---SSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRASKL 552

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
            R+ +       T   + L I    ++   ++ + +L  M Q GC P+ +  + +I+ +C
Sbjct: 553 AREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLC 612

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTIVY 593
           K   +++A ++F  +  R ++  A+++ Y
Sbjct: 613 KLDKVDKAWELFDEMAVRGIV--ASSVSY 639



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 197/457 (43%), Gaps = 38/457 (8%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+      +L  M    C+P    Y  +I  L  ++N+D    + +E        DV+ Y
Sbjct: 59  GKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTY 118

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L  GLCK GR+    EL +EM  NG   +   Y  LI+GL    K  KA +LL+ LV 
Sbjct: 119 SILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVS 178

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           SG+  D+  Y  I+ GLC+  + DKA K+ E  ++    P   T   L+      GR+D 
Sbjct: 179 SGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDE 238

Query: 362 FFKLLAQMEK-----------------LKFSVAADLEKFFEFLVG--------------- 389
              +  +M                    K S   + +K  + + G               
Sbjct: 239 AHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYC 298

Query: 390 KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           KE R+    +VFE++  +G   ++  YNI+M  L + G+V +A      M       + +
Sbjct: 299 KEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVV 358

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           S++I I    ++    EA +  +++I+    P    YN L    CK    D A+ ++++ 
Sbjct: 359 SYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNM 418

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC-SAIISGMCKHG 567
           +      P    Y   I  + ++       E+++EM + GC  +     + II  +CK G
Sbjct: 419 I-KAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEG 477

Query: 568 TLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
            L++A  +  ++    +  EANT+ Y+ I I+ + K+
Sbjct: 478 CLKQALLLMDHMTGHGV--EANTVTYN-IFIDRLCKE 511



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 193/423 (45%), Gaps = 23/423 (5%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PDVF Y  +I  L      D    +  EM    V  D + + +++ GLCK G+  R H L
Sbjct: 8   PDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSL 67

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              M E         Y  LI GL  +  V +A  L+ + V SG+  D+  Y+ +  GLC+
Sbjct: 68  LAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCK 127

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             + D+A++L +    +   P+  T N L+    +  + +  ++LL  +    F    D+
Sbjct: 128 RGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGF--VPDV 185

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             +   + G  KE R+  AL + E +  +G + SV  Y  LM  L   G V +A ++F +
Sbjct: 186 VTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKE 245

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE-MSQVPSVAAYNCLTKGLCKIG 496
           M   +   ++L++   +  + +S    EA     K+++ +   P +  YN L  G CK G
Sbjct: 246 MVSKDCTADALAYVSLVNGYCKSSRTKEA----QKVVDGIRGTPYIDVYNALMDGYCKEG 301

Query: 497 EIDA-----AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
            +D        M  R C+ N+ +      Y + +  +C+ G+ ++    L  M   GC P
Sbjct: 302 RLDEIPNVFEDMACRGCVPNIKT------YNIVMDGLCKHGKVDEAFPFLESMHSAGCVP 355

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLS 611
           + V  + II G+ K    +EAR+V   + +  +  +A  + Y+ ++ +  K++  D  + 
Sbjct: 356 DVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDA--VTYNTLMAQFCKEERFDDAVG 413

Query: 612 GLK 614
            LK
Sbjct: 414 ILK 416



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 6/191 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + + L +++ M  +  + +   Y   I  L  E  LD    +  EM       D ++
Sbjct: 476 EGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMD---TLRDEVS 532

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y T+I+GLCK  ++ R  +L REM    G+ I    + +LI+      ++ +A  LL+ +
Sbjct: 533 YTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELM 592

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           V  G    +  YN +I  LC++ + DKA++LF E+ V+  +A   S    +   C + GR
Sbjct: 593 VQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQ-GR 651

Query: 359 MDNFFKLLAQM 369
                ++L +M
Sbjct: 652 GKEALQVLEEM 662



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 54/115 (46%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E L +LE M +  C P V  Y  +I  L     +D    +++EM    + A  ++Y 
Sbjct: 581 RLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYT 640

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
            LI GLC  GR     ++  EM  +   ID      L   L G+G+  +A +LL+
Sbjct: 641 VLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLR 695



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 5/128 (3%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTA-----MIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           AE L+   K+ R +        T+     +I      + LD  L + E M +      V+
Sbjct: 543 AEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVI 602

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I  LCK  +V +  ELF EM   GI+     Y VLI GL G+G+  +A  +L+++
Sbjct: 603 TYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEM 662

Query: 300 VDSGYRAD 307
             S    D
Sbjct: 663 ASSDCEID 670


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 118/513 (23%), Positives = 218/513 (42%), Gaps = 31/513 (6%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           + ++P  V ++LK E NP  A   F    +  GY H    ++ +   L    L     ++
Sbjct: 6   KSLSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHVSRI 65

Query: 175 PELMDSQ-------------------GRIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLA 214
            EL+ +Q                       + L+I ++M     C+P + +Y +++  L 
Sbjct: 66  VELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALI 125

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
                D     +   +   +  ++  Y  LI   C+  +  +  EL   M E G   D  
Sbjct: 126 ESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVF 185

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
            YG LI  L   G +  A  L  ++ + G   D+  YN +I G  +      A +++E  
Sbjct: 186 SYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERL 245

Query: 335 VQD-DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KE 391
           ++   + P+  + N ++    + G+ D  F++  +M+K +     DL  +   + G    
Sbjct: 246 LKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNE--RGQDLYTYSTLIHGLCGS 303

Query: 392 ERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
             +  A  V++E+   G S  V +YN ++   L  G +++ L L+  M         +S+
Sbjct: 304 GNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRT-VVSY 362

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +I I+   E+  + EA      + E         Y  L  GLCK G ++ A+ ++ +   
Sbjct: 363 NILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAEN 422

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
                 T F Y+  I  +CR G  +++  VL++MT+ GC PN  +C+A+I+G  +   LE
Sbjct: 423 GRGDLDT-FAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLE 481

Query: 571 EARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           +A + F N+  +       T+V    LI  + K
Sbjct: 482 DALRFFGNMVSKGCFP---TVVTYNTLINGLSK 511



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 113/471 (23%), Positives = 209/471 (44%), Gaps = 34/471 (7%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA----DQVPE------------LM 178
           A +  +W  +Q G+  +  SY  L   L++N     A    D++PE            L+
Sbjct: 168 AKELLNWMWEQ-GFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILI 226

Query: 179 DS---QGRIAEMLEILEKMRRN-LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
           D    +G I    EI E++ +     P++ +Y  MI  L      D    +W  MKK+  
Sbjct: 227 DGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNER 286

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
             D+  Y TLI GLC  G +     +++EM ENG+  D  +Y  ++ G +  G++ +  +
Sbjct: 287 GQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLE 346

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           L K +   G R  +  YN +I GL    + D+A  ++E+  + D   D  T   L+    
Sbjct: 347 LWKVMEKEGCRTVVS-YNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLC 405

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKF-FEFLVG---KEERIMMALDVFEELKGKGYS 410
           + G ++    +L + E  +     DL+ F +  ++    +E R+     V +++   G  
Sbjct: 406 KNGYLNKALSILEEAENGR----GDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCK 461

Query: 411 SVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
             P + N ++   +   +++ AL  FG M         ++++  I    ++    EA   
Sbjct: 462 PNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYAL 521

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH-V 528
             +++     P++  Y+ L  GLC+  ++D A+ L   C         + K    I+H +
Sbjct: 522 VKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLW--CQALEKGFKPDVKMHNIIIHGL 579

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           C SG+ E  +++ +EM Q  C PN V  + ++ G  K    E A K++ ++
Sbjct: 580 CSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHI 630



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 145/309 (46%), Gaps = 11/309 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI E LE+ + M +  C+  V +Y  +IR L     +D  + +WE + +    AD M Y
Sbjct: 339 GRIEECLELWKVMEKEGCRT-VVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTY 397

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLCK G + +   +  E +     +D   Y  +I GL  EG++ +   +L  +  
Sbjct: 398 GVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTK 457

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + +  + N++I G  R  + + A + F   V     P   T N L+   ++  R   
Sbjct: 458 HGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSE 517

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
            + L+ +M  L      ++  +   + G  + +++ MAL+++ +   KG+   V ++NI+
Sbjct: 518 AYALVKEM--LHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNII 575

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L   G+V+ AL L+ +M+      N ++ +  ++   +  D   A +  + I++   
Sbjct: 576 IHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQ--- 632

Query: 479 VPSVAAYNC 487
             S ++ NC
Sbjct: 633 --SWSSSNC 639


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 126/508 (24%), Positives = 227/508 (44%), Gaps = 42/508 (8%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEM 187
           G   N  +YNAL   L +N  F  AD++ + M  +G                    I + 
Sbjct: 333 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDA 392

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L + +KMR    K  V+ Y ++I     + +LD    +   M K+ +     +Y  LI G
Sbjct: 393 LCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAG 452

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC+ G +    EL REM E GI  +   +  LI G   + K+ +A  L   ++DS    +
Sbjct: 453 LCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPN 512

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
              +N +I G C V    KA++L++  V+  L PD  T   L+        +    + +A
Sbjct: 513 EVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVA 572

Query: 368 QMEKL-----KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
            +E        FS+ A L  FF     +E R      +++E+  +G    +  + I++ A
Sbjct: 573 DLENSYAVLNNFSLTALLYGFF-----REGRFTETYHLWDEMAVRGVKLDLVSFTIIVYA 627

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
            L+  + +K+  LF +M+   ++ + + ++  I    +  ++++A  C ++++     P+
Sbjct: 628 ALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPN 687

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
              +  L   LCK G + +A +L ++ L GNV   P +F Y   + +    G+ EK  ++
Sbjct: 688 TVTHTVLINNLCKSGYLGSAELLCKEMLAGNVL--PNKFTYNCFLDYFATEGDMEKAKDL 745

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
            + M Q G   + V  + +I G+CK G ++EA  + + + E       + I Y  I+ E 
Sbjct: 746 HSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGF--SPDCISYSTIIHEL 802

Query: 601 MKKKTADLVLSGLKFFGLESKLKAKGCK 628
            K    +      K F L +++  KG K
Sbjct: 803 CKMGDIN------KAFELWNEMLYKGLK 824



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 112/479 (23%), Positives = 203/479 (42%), Gaps = 68/479 (14%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           + KG K     YN+L   YC                   QG +     +L  M +    P
Sbjct: 400 RDKGIKVTVYPYNSLINGYC------------------KQGSLDRARGLLSGMVKEGLTP 441

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
              +Y+ +I  L    +L +C+ +  EM +  +  +   +  LI G CK  ++     LF
Sbjct: 442 TAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLF 501

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            +M ++ ++ +   + V+IEG    G + KA  L   +V+ G + D   Y S+I GLC  
Sbjct: 502 DKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLT 561

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVN-----PLLVCCAEMGRMDNFFKLLAQM------- 369
               KA +        DL   ++ +N      LL      GR    + L  +M       
Sbjct: 562 SGVSKANEFVA-----DLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKL 616

Query: 370 EKLKFSVAA-------DLEK------------------FFEFLV---GKEERIMMALDVF 401
           + + F++         D EK                  F+  ++    KEE ++ AL+ +
Sbjct: 617 DLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCW 676

Query: 402 EELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
           +++   GYS +   + +L+  L + G +  A  L  +M   N+  N  +++  +      
Sbjct: 677 DQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATE 736

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
           GD+ +A + H+ +++   + S+ ++N L KGLCK G+I  A+ L+   +      P    
Sbjct: 737 GDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMSK-ITESGFSPDCIS 794

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           Y+  I  +C+ G+  K  E+ NEM  +G  P+ V  +  I     HG  ++A  ++TN+
Sbjct: 795 YSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNM 853



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 101/460 (21%), Positives = 189/460 (41%), Gaps = 43/460 (9%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++ +KM ++    D + YTA IR     RNLD    +   M+ + V+A  + Y  L+ GL
Sbjct: 184 DLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGL 243

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY---- 304
           CK  RV    E+   M   G+  D   Y  L+ G     ++  A  +  D++  G+    
Sbjct: 244 CKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSE 303

Query: 305 -------------------------RADLGI------YNSIIGGLCRVKQFDKAYKLFEV 333
                                      DLG+      YN++I  LC+ ++FD A +LF+ 
Sbjct: 304 ANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKE 363

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KE 391
                L P+  T   L+    + G +++   L  +M      V   +  +   + G  K+
Sbjct: 364 MAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVT--VYPYNSLINGYCKQ 421

Query: 392 ERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
             +  A  +   +  +G + +   Y+ L+  L   G++   + L  +M    +  N+ +F
Sbjct: 422 GSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTF 481

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +  I    +   + EA    +K+I+ + +P+   +N + +G C +G I  A  L  D + 
Sbjct: 482 TALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLY-DQMV 540

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
            +   P  + Y   I  +C +    K  E + ++       N    +A++ G  + G   
Sbjct: 541 EMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFT 600

Query: 571 EARKVFTNLRER--KLLTEANTIVYDEILIEHMKKKTADL 608
           E   ++  +  R  KL   + TI+    L +H K+K+  L
Sbjct: 601 ETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVL 640



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 164/366 (44%), Gaps = 9/366 (2%)

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           ++  L K  +     +LF +M ++G+ +D  +Y   I        +  A  L+  +   G
Sbjct: 169 ILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEG 228

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            +A    YN ++ GLC+  +  +A ++  V V   +  D  T   L+     M  ++   
Sbjct: 229 VKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMAL 288

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGAL 422
           ++   M +L F  +     F    + K+E +  A  +  +L   G   +V  YN L+  L
Sbjct: 289 RITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKL 348

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            +      A  LF +M G  LE N ++++I I    + G I +A    +K+ +     +V
Sbjct: 349 CKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTV 408

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEV 540
             YN L  G CK G +D A  L+    G V  G  PT   Y+  I  +CR+G+    +E+
Sbjct: 409 YPYNSLINGYCKQGSLDRARGLLS---GMVKEGLTPTAASYSPLIAGLCRNGDLSSCMEL 465

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL---TEANTIVYDEIL 597
             EM + G   N    +A+I+G CK   ++EA ++F  + +  ++      N ++    L
Sbjct: 466 HREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCL 525

Query: 598 IEHMKK 603
           + +++K
Sbjct: 526 VGNIRK 531



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 40/264 (15%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +  +M+    KPD   YT MI  L+ E N+   L  W++M  D    + + +  LI  LC
Sbjct: 640 LFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLC 699

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYG-------------------------------- 277
           K G +     L +EM    +L ++  Y                                 
Sbjct: 700 KSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVS 759

Query: 278 --VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
             +LI+GL   GK+ +A DL+  + +SG+  D   Y++II  LC++   +KA++L+   +
Sbjct: 760 FNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEML 819

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM 395
              L PD    N  +  C   G  D    +   M  ++  V  + + +   L G    +M
Sbjct: 820 YKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNM--IRSGVQPNWDTYRALLSGIS--LM 875

Query: 396 MALDVFEELKG-KGYSSVPIYNIL 418
           +  D F   +G K Y  + +Y ++
Sbjct: 876 LHYD-FSCFRGTKQYIQISVYELM 898



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 125/290 (43%), Gaps = 2/290 (0%)

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           + SG   +    + I+  L +++QF  A  LF+  +Q  +  D       +    E   +
Sbjct: 155 LSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNL 214

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNIL 418
           D    L+ +ME      +A       + + K  R+  A++V   +   G ++  + Y  L
Sbjct: 215 DGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTL 274

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +     + E++ AL +   M  L    +  + S  I    +   + EA     K+ ++  
Sbjct: 275 VYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM 334

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           VP+V AYN L   LCK    D A  L ++  G     P E  YA+ I  +C+ G  E  +
Sbjct: 335 VPNVFAYNALIDKLCKNERFDDADRLFKEMAGR-GLEPNEVTYAILIHALCKRGMIEDAL 393

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
            + ++M  +G        +++I+G CK G+L+ AR + + + +  L   A
Sbjct: 394 CLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTA 443



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 106/226 (46%), Gaps = 9/226 (3%)

Query: 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
            L V  E +G   S+VP YN+LM  L +   V++A+ +   M  + +  + +++   +  
Sbjct: 219 GLVVRMESEGVKASAVP-YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYG 277

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASG 515
                ++  A    + +I +  VPS A  + +   L K   ++ A  L   C LG++   
Sbjct: 278 FCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLA--CKLGDLGMV 335

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P  F Y   I  +C++   +    +  EM   G  PNEV  + +I  +CK G +E+A  +
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 576 FTNLRERKLLTEANTIVYDEILIEHMKKKTADL---VLSGLKFFGL 618
           F  +R++ +  +     Y+ ++  + K+ + D    +LSG+   GL
Sbjct: 396 FDKMRDKGI--KVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGL 439


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 196/435 (45%), Gaps = 15/435 (3%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R A+ + +L  M+    +PDV  Y  +IR L    ++D  + +  EM +  +E +V+ Y 
Sbjct: 109 RAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYS 168

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            L+ G CK GR     ++F EM   GI  D  +Y  LI+ L   GKV KA  ++  + + 
Sbjct: 169 CLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTER 228

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   ++  YN +I  +C+     +A  L +   +  + PD  T N L+   + +  MD  
Sbjct: 229 GLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEA 288

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILM 419
             LL +M + +  V  DL  F   + G  K   +  AL V   +   G   ++  +N+L+
Sbjct: 289 MALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLI 348

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
           G LL + +VKKA+ L  +M    L+ +S ++SI I    +   +  A    +++      
Sbjct: 349 GGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGME 408

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLV----RDCLGNVASGPTEFKYALTILHVCRSGEAE 535
           P    Y  L K +C  G +  A  L     R+C  + A+      Y+  I    +SGE +
Sbjct: 409 PEPVHYIPLLKAMCDQGMMGQARDLFNEMDRNCKLDAAA------YSTMIHGAFKSGEKK 462

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
              E L +M  EG  P+ V  S  I+   K G L  A +V   +     +   +  V+D 
Sbjct: 463 IAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFV--PDVAVFDS 520

Query: 596 ILIEHMKKKTADLVL 610
           ++  +  K   + +L
Sbjct: 521 LIQGYGAKGDTEKIL 535



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 184/435 (42%), Gaps = 56/435 (12%)

Query: 150 HNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAM 209
            +  SYN +   L R     AA  +  +M  + R+A              +P+  +YT +
Sbjct: 54  RDAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLAS-------------RPNAISYTTL 100

Query: 210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
           +R L A+R     + +   M+   V  DV+ Y TLI GLC    V    EL  EM E+GI
Sbjct: 101 MRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGI 160

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
             +  +Y  L+ G    G+      + +++   G   D+ +Y ++I  LCR  +  KA +
Sbjct: 161 EPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAAR 220

Query: 330 LFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
           + ++  +  L P+  T N L+  +C                                   
Sbjct: 221 VMDMMTERGLEPNVVTYNVLINSMC----------------------------------- 245

Query: 388 VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV- 445
             KE  +  ALD+ + +  KG    V  YN L+  L  + E+ +A+ L  +M      V 
Sbjct: 246 --KEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVR 303

Query: 446 -NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            + ++F+  I    + G + +A +    + E     ++ A+N L  GL ++ ++  AM L
Sbjct: 304 PDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMEL 363

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
           + D + +    P  F Y++ I   C+  + E+    L+EM  +G  P  V    ++  MC
Sbjct: 364 M-DEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMC 422

Query: 565 KHGTLEEARKVFTNL 579
             G + +AR +F  +
Sbjct: 423 DQGMMGQARDLFNEM 437



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/418 (22%), Positives = 172/418 (41%), Gaps = 59/418 (14%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS-------------------QGRIAE 186
           +G + +   Y AL   L R+   + A +V ++M                     +G + E
Sbjct: 193 RGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVRE 252

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK--DLVEADVMAYVTL 244
            L++ + M     +PDV  Y  +I  L++   +D  + + EEM +    V  D+M + ++
Sbjct: 253 ALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSV 312

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLCK G + +  ++   M ENG   +   + +LI GL+   KV KA +L+ ++  SG 
Sbjct: 313 IHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGL 372

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           + D   Y+ +I G C+++Q ++A           + P+     PLL    + G M     
Sbjct: 373 QPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQ--- 429

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE 424
                                           A D+F E+          Y+ ++    +
Sbjct: 430 --------------------------------ARDLFNEMDRNCKLDAAAYSTMIHGAFK 457

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            GE K A      M    L  +++++SI I    +SGD+  A     ++     VP VA 
Sbjct: 458 SGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAV 517

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLG-NVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           ++ L +G    G+ +  + L R+    +VA  P      +T L    S E +K+++ L
Sbjct: 518 FDSLIQGYGAKGDTEKILELTREMTAKDVALDPKIISTIVTSLGA--SIEGQKLLQSL 573



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 45/187 (24%)

Query: 476 MSQVPSV---AAYNCLTKGLCKIGEIDAAMMLVR-------------------------- 506
           +S +PSV    +YN +   LC+ G +DAA+ L+R                          
Sbjct: 47  LSALPSVRDAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCA 106

Query: 507 DCLGNVASG-----------PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           D     A G           P    Y   I  +C + + +  +E+LNEM + G  PN V+
Sbjct: 107 DRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVV 166

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI---LIEHMKKKTADLVLSG 612
            S ++ G CK G  E   KVF  +  R +  E + ++Y  +   L  H K K A  V+  
Sbjct: 167 YSCLLHGYCKTGRWESVGKVFEEMSGRGI--EPDVVMYTALIDSLCRHGKVKKAARVMDM 224

Query: 613 LKFFGLE 619
           +   GLE
Sbjct: 225 MTERGLE 231


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 187/422 (44%), Gaps = 9/422 (2%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD + YT +IRVL     +   L + ++M +   + +V+ Y  L+  +C+     +   +
Sbjct: 141 PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAV 200

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             EM+  G   +   Y V+I G+  EG+V  A +LL  L   G++ D   Y +++ GLC 
Sbjct: 201 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCA 260

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            K++D   +LF   ++ +  P+  T + L+      G ++   ++L QM +   +    L
Sbjct: 261 SKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTL 320

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMR 439
                  + K+ R+  A  +  ++   G +   I Y  ++  L        A  L  +M 
Sbjct: 321 CNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMV 380

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
             N   N ++F+  I    + G I +A     ++ E      V  YN L  G C  G ID
Sbjct: 381 RNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHID 440

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           +A+ L R    ++   P    Y   +  +C +   +   E++ EM +  CPPN V  + +
Sbjct: 441 SALELFR----SMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVL 496

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLE 619
           +S  C+ G LEEA ++   + E       N I Y+ +L    K  +++  L  L   GL 
Sbjct: 497 VSFFCQKGFLEEAIELVEQMMEHG--CTPNLITYNTLLDGITKDCSSEDALELLH--GLV 552

Query: 620 SK 621
           SK
Sbjct: 553 SK 554



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/496 (21%), Positives = 204/496 (41%), Gaps = 55/496 (11%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLF----------RAADQVPEL---------MDSQGRIA 185
           ++G + N  +Y  L   + RN+ F          RA    P +         M  +GR+ 
Sbjct: 171 RRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 230

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           +  E+L ++     +PD  +YT +++ L A +  D    ++ EM +     + + +  LI
Sbjct: 231 DARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLI 290

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              C+GG V R  ++  +M E+G   +  +  ++I  +  +G+V  A  LL D+   G  
Sbjct: 291 RFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCN 350

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D   Y +++ GLCR +++D A +L    V+++  P+  T N  +    + G ++    L
Sbjct: 351 PDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIML 410

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEI 425
           + QM +   +V              +  I  AL++F  +  K   +   Y  L+  L   
Sbjct: 411 IEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCK--PNTITYTTLLTGLCNA 468

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
             +  A  L  +M   +   N ++F++ +    + G + EA E   +++E    P++  Y
Sbjct: 469 ERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITY 528

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLG----------------------------------N 511
           N L  G+ K    + A+ L+   +                                   +
Sbjct: 529 NTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQD 588

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
           +   P    Y   +L +C+  E +  I+    M   GC PNE     +I G+   G L+E
Sbjct: 589 IGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKE 648

Query: 572 ARKVFTNLRERKLLTE 587
           A+ + + L  R +L +
Sbjct: 649 AQDLLSVLCSRGVLNK 664



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 181/403 (44%), Gaps = 11/403 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+A+ L +L+ M R  C+P+V  YT ++  +      +  + V +EM+      +++ 
Sbjct: 156 RGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVT 215

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G+C+ GRV    EL   +   G   D   Y  L++GL    +     +L  +++
Sbjct: 216 YNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMM 275

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +     +   ++ +I   CR    ++A ++ E   +   A + +  N ++    + GR+D
Sbjct: 276 EKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVD 335

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYNI 417
           + FKLL  M    +    D   +   L G  + ER   A ++  E+ +     +   +N 
Sbjct: 336 DAFKLLNDMG--SYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNT 393

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
            +  L + G +++A+ L  +M      V  ++++  +      G I  A E       M 
Sbjct: 394 FICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRS---MP 450

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILHVCRSGEAEK 536
             P+   Y  L  GLC    +D A  LV + L G+    P    + + +   C+ G  E+
Sbjct: 451 CKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCP--PNVVTFNVLVSFFCQKGFLEE 508

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            IE++ +M + GC PN +  + ++ G+ K  + E+A ++   L
Sbjct: 509 AIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGL 551



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 173/400 (43%), Gaps = 14/400 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PDV+  T +IR L          RV    +      DV AY TL+ G C+ G +     L
Sbjct: 74  PDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRL 133

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              M    +  D   Y  LI  L   G+V  A  LL D++  G + ++  Y  ++  +CR
Sbjct: 134 IGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCR 190

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
              F++A  + +        P+  T N ++      GR+D+  +LL ++    F    D 
Sbjct: 191 NSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQ--PDT 248

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGK 437
             +   L G    +R     ++F E+  K      + +++L+      G V++A+ +  +
Sbjct: 249 VSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQ 308

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M       N+   +I I    + G + +A +  N +      P   +Y  + KGLC+   
Sbjct: 309 MTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAER 368

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
            D A  L+ + + N    P E  +   I  +C+ G  E+ I ++ +M++ GC    V  +
Sbjct: 369 WDDAKELLNEMVRNNCP-PNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYN 427

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           A+++G C  G ++ A ++F     R +  + NTI Y  +L
Sbjct: 428 ALVNGFCVQGHIDSALELF-----RSMPCKPNTITYTTLL 462


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 110/466 (23%), Positives = 212/466 (45%), Gaps = 24/466 (5%)

Query: 151 NFASYNALAYCLSRNNLFR------AADQVPE-------LMDS---QGRIAEMLEILEKM 194
           + A+YN+L Y L   ++         A  VP+       L+D    Q R+ + +  L + 
Sbjct: 202 SIATYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRET 261

Query: 195 RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
                 P V ++ A++       ++D     +  M K  +  DV +Y  L+ GLC  G +
Sbjct: 262 GGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSM 321

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
               E   +M+ +G+  D   Y +L  G    G +  A  +++ ++ +G   DL  Y  +
Sbjct: 322 EEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTIL 381

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
           I G C++   ++++KL E  +   L     T   LL    + GR+D    LL +ME +  
Sbjct: 382 ICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVI-- 439

Query: 375 SVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKA 431
            +  DL  +   + G  K   +  A++++EE+  K  Y +  + + ++  L E G + +A
Sbjct: 440 GLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEA 499

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
              F  +   ++    + ++I I  + + G+I EA   + +IIE    P++  +N L  G
Sbjct: 500 QMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYG 559

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
            CK G++  A+ L+ D +      PT   Y   +   C  G+   + ++L+EM  +   P
Sbjct: 560 FCKKGKLAEAVKLL-DTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKP 618

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            ++  + ++ G+CK G L E+ ++   +  R L  +   I Y+ ++
Sbjct: 619 TQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPD--QITYNTVI 662



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 122/513 (23%), Positives = 226/513 (44%), Gaps = 48/513 (9%)

Query: 95  AFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFAS 154
           +F  ++F WG    T  S L     D +   L+V+N+ + A   F     + G++H+  S
Sbjct: 59  SFGASKFLWGHHFQTLASVLNTHQVDQILLSLRVDNSDS-ALFLFDLLRNEYGFRHSRVS 117

Query: 155 YNALAYCLSRNN----LFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           +  +++ ++R      L R  +Q+ E  +  G    + E+L    R+    +V       
Sbjct: 118 WFIVSHVVARKGQSKELRRVLNQMVE-EEGSGSAPSLCELLCNSFRDWDLNNVVWDMLAC 176

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
               AE   DA L V  +MK   ++  +  Y +L+  L     +    +++ E+K +G+ 
Sbjct: 177 AYSRAEMVHDA-LFVLAKMKVLNLQVSIATYNSLLYNLRHTDIM---WDVYNEIKASGVP 232

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
            +     +LI+GL  + ++  A   L++     +   +  +N+++ G C++   D A   
Sbjct: 233 QNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSF 292

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK 390
           F + ++  L PD  + N LL      G M+         E L+F+   D+E       G 
Sbjct: 293 FCMMIKYGLLPDVYSYNILLHGLCVAGSME---------EALEFT--NDMENH-----GV 336

Query: 391 EERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
           E  I+                   YNIL      +G +  A  +  +M    L  + +++
Sbjct: 337 EPDIV------------------TYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTY 378

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +I I  H + G+I E+ +   K++      S+  Y  L   LCK G ID A++L+ + + 
Sbjct: 379 TILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHE-ME 437

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
            +   P    Y++ I  +C+ G  E+ IE+  EM  +   PN  +CSAIISG+ + G + 
Sbjct: 438 VIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAIS 497

Query: 571 EARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           EA+  F ++ +  +   A  I+   I+I+   K
Sbjct: 498 EAQMYFDSVTKSDV---AEEIILYNIMIDGYAK 527



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/441 (21%), Positives = 201/441 (45%), Gaps = 17/441 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E LE    M  +  +PD+  Y  +         +    +V + M  + +  D++ Y
Sbjct: 319 GSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTY 378

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G C+ G +    +L  +M   G+ +    Y VL+  L   G++ +A  LL ++  
Sbjct: 379 TILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEV 438

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + DL  Y+ +I GLC+    ++A +L+E      + P+    + ++    E G +  
Sbjct: 439 IGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISE 498

Query: 362 FFKLLAQM--EKLKFSVAADLEKFFEFLV---GKEERIMMALDVFEELKGKGYS-SVPIY 415
                AQM  + +  S  A+    +  ++    K   I  A+  ++++  KG S ++  +
Sbjct: 499 -----AQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTF 553

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+    + G++ +A+ L   ++   L   S++++  +  + E GD+    +  +++  
Sbjct: 554 NSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEA 613

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
            +  P+   Y  + KGLCK G +  ++ L++         P +  Y   I   C++ + +
Sbjct: 614 KAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYAR-GLFPDQITYNTVIQSFCKAHDLQ 672

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           K  ++ N+M Q    P+ V  + +I+G+C +G L++A ++   L+++ +      + Y  
Sbjct: 673 KAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSI--RLTKVAYTT 730

Query: 596 ILIEHMKKKTADLVLSGLKFF 616
           I+  H  K     V + L FF
Sbjct: 731 IIKAHCAKGD---VQNALVFF 748



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 106/491 (21%), Positives = 202/491 (41%), Gaps = 59/491 (12%)

Query: 92  ITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQK----G 147
           + + FR      G   V +   L  + PDLV   + +  +  + +    +  K+K    G
Sbjct: 346 LANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQG 405

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYT 207
            K +  +Y  L   L ++                GRI E + +L +M     KPD+  Y+
Sbjct: 406 LKLSIVTYTVLLSSLCKS----------------GRIDEAVILLHEMEVIGLKPDLLTYS 449

Query: 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
            +I  L     ++  + ++EEM    +  +      +I GL + G +      F  + ++
Sbjct: 450 VLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKS 509

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
            +  +  +Y ++I+G    G +G+A    K +++ G    +  +NS+I G C+  +  +A
Sbjct: 510 DVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEA 569

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
            KL +      L P   T   L+    E G M + F +L +ME                 
Sbjct: 570 VKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEME----------------- 612

Query: 388 VGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
                              K      I Y +++  L + G + +++ L   M    L  +
Sbjct: 613 ------------------AKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPD 654

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI-DAAMMLV 505
            ++++  IQ   ++ D+ +A + HN++++ S  PS   YN L  GLC  G + DA  +LV
Sbjct: 655 QITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLV 714

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
              L + +   T+  Y   I   C  G+ +  +   ++M + G   +    SA+I+ +CK
Sbjct: 715 T--LQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCK 772

Query: 566 HGTLEEARKVF 576
              + +A+  F
Sbjct: 773 RNLITDAKFFF 783


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 189/387 (48%), Gaps = 10/387 (2%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +P    +T +IR L  E  +   L+++++M  +  + DV+ Y TLI GLCK G       
Sbjct: 121 QPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIR 180

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
             R M++        +Y  +I+ L  + ++ +A  L  D++  G   +   Y+S+I GLC
Sbjct: 181 FLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLC 240

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
            +  + +A +LF   +   + PD  T N L+    + G +     ++  M  ++  +  D
Sbjct: 241 ILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVM--IQSDLKPD 298

Query: 380 LEKFFEFLVGKEERIMMA--LDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFG 436
           +  +   + G   R  M   ++VF+ +  KG   SV  Y  L+    +I  + KA+ LF 
Sbjct: 299 VVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFE 358

Query: 437 KMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           +M    L  ++++++  I   CHV  G + +A    ++++   Q+P +  Y  L   LCK
Sbjct: 359 EMSQQGLIPDTVTYNTLIHGLCHV--GRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCK 416

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
              +  AM+L++   G     P    Y++ +  +CR+GE E   ++ ++++ +G  P+  
Sbjct: 417 NHRLAEAMVLLKVIEGTNLD-PDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVR 475

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRE 581
             + +I+G+C+ G L EA K+F  + E
Sbjct: 476 TYTIMINGLCQQGLLAEASKLFGEMDE 502



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 162/396 (40%), Gaps = 41/396 (10%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           I + L +  +M R    P +  ++ ++  +   ++    L ++++M    +  +      
Sbjct: 35  IDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNI 94

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           LI   C   R+     +  ++ + G     A +  LI GL  EGK+G+A  L   +   G
Sbjct: 95  LINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEG 154

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDN 361
           ++ D+  Y ++I GLC+V     A +      Q +  P     + ++  +C         
Sbjct: 155 FQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLC--------- 205

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
                                       K+ ++  AL +F ++  KG S +   Y+ L+ 
Sbjct: 206 ----------------------------KDRQLTEALSLFSDMLAKGISPNNFTYSSLIH 237

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L  +G  K+A+ LF  M    +  + L+F+  +    + G +++A    + +I+    P
Sbjct: 238 GLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKP 297

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  YN L  G C   E+   +  V D +      P+   Y   I   C+    +K + +
Sbjct: 298 DVVTYNSLMDGHCLRSEMGKTVN-VFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGL 356

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
             EM+Q+G  P+ V  + +I G+C  G L +A  +F
Sbjct: 357 FEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALF 392



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 3/238 (1%)

Query: 176 ELMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
            LMD     +EM   + + + M R  C P V +YT +I      + +D  + ++EEM + 
Sbjct: 304 SLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQ 363

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            +  D + Y TLI GLC  GR+     LF EM   G + D   Y +L + L    ++ +A
Sbjct: 364 GLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEA 423

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
             LLK +  +    D+ IY+ ++ G+CR  + + A  LF       L PD  T   ++  
Sbjct: 424 MVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMING 483

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS 410
             + G +    KL  +M++   S  A           +    + A+ +F+E+  +G+S
Sbjct: 484 LCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFS 541



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 78/169 (46%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + + +  +M      PD+  Y  +   L     L   + + + ++   ++ D+  Y
Sbjct: 383 GRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIY 442

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++ G+C+ G +    +LF ++   G+  D   Y ++I GL  +G + +A  L  ++ +
Sbjct: 443 SIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDE 502

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           +G   +   YN I  G  R  +  +A +LF+  +    + D ST   L+
Sbjct: 503 NGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSIDVSTTTLLV 551


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 181/423 (42%), Gaps = 57/423 (13%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR++  + + E M+   C+P+V+ Y AM++       +   + + ++M++  VE DV+ 
Sbjct: 313 EGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVT 372

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G C  G +     L R M+ NG+  D+  Y VLI+ L   GKV +AC L   L 
Sbjct: 373 YNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLE 432

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G R +   +N++I GLC+  +FD A    E  V    APD  T +P +         +
Sbjct: 433 YRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFI---------E 483

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
           N  K     E L F                         + E L+     S   Y I++ 
Sbjct: 484 NLCKTKGSREGLSF-------------------------IDEMLQKDVKPSTVNYTIVID 518

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ-- 478
            L +      A  ++G+M  L    + ++++ +++ +   G + EA    N ++EM +  
Sbjct: 519 RLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEA---ENVVMEMKKGG 575

Query: 479 -VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY---------------- 521
            +    AYN L  G   IG+ D A+ +++   G VAS P  F +                
Sbjct: 576 IIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTG-VASMPNHFTFFILLRHLLQRRLAEDV 634

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            L    V ++ E   + E+   M +   P +     AI+ G  +   L+E   + ++++E
Sbjct: 635 PLKTTSVWKTIELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKE 694

Query: 582 RKL 584
             L
Sbjct: 695 DDL 697



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 111/503 (22%), Positives = 205/503 (40%), Gaps = 69/503 (13%)

Query: 153 ASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRV 212
           A+YNAL   L R    R A +   LM   G                 +PD F + ++I  
Sbjct: 130 ATYNALIRALCRRADLRHAQRYLSLMVRSG----------------WRPDAFTFNSLILG 173

Query: 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
               + LD    ++++M       D ++Y  LI G C+ GRV    ELFRE+++     D
Sbjct: 174 YCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQP----D 229

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              +  L++GL    +  +   +L+ + + G+R     Y +++   CR ++ ++A K+  
Sbjct: 230 MYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLN 289

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK------FSVAADLEKFFEF 386
               + L P   T   ++      GRM    ++   M KLK      ++  A ++ F   
Sbjct: 290 EMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESM-KLKGCEPNVWTYNAMVQGFCN- 347

Query: 387 LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
            VGK  + M  LD   E   +    V  YN+L+      G ++ A  L   M G  L  +
Sbjct: 348 -VGKVYKAMALLDQMRECGVE--PDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAAD 404

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
             ++++ I    ++G + EAC   + +      P+   +N +  GLCK G+ D A   + 
Sbjct: 405 QYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLE 464

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE------------------- 547
             + +    P  + Y+  I ++C++  + + +  ++EM Q+                   
Sbjct: 465 K-MVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKE 523

Query: 548 ----------------GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
                           GC P+ V  +  +   C  G L EA  V   +++  ++ +A  +
Sbjct: 524 RNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDA--M 581

Query: 592 VYDEILIEHMKKKTADLVLSGLK 614
            Y+ ++  H      D  ++ LK
Sbjct: 582 AYNTLIDGHTSIGKTDHAVTILK 604



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 171/406 (42%), Gaps = 16/406 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P    Y A+IR L    +L    R    M +     D   + +LI+G C+  ++    +L
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDL 186

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F +M   G   D   Y  LIEG    G+V +A +L ++L     + D+  + +++ GLC 
Sbjct: 187 FDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFREL----EQPDMYTHAALVKGLCD 242

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            ++ ++   + +   +    P       L+       + +   K+L +M        A  
Sbjct: 243 ARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVT 302

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
                    +E R+  A+ VFE +K KG   +V  YN ++     +G+V KA+ L  +MR
Sbjct: 303 CTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMR 362

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA----YNCLTKGLCKI 495
              +E + +++++ I+     G I    E   +++ + +   +AA    YN L   LCK 
Sbjct: 363 ECGVEPDVVTYNLLIRGQCIDGHI----ESAFRLLRLMEGNGLAADQYTYNVLIDALCKT 418

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G++D A  L  D L      P    +   I  +C+ G+ +     L +M   GC P+   
Sbjct: 419 GKVDEACSLF-DGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYT 477

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRER--KLLTEANTIVYDEILIE 599
            S  I  +CK     E       + ++  K  T   TIV D +  E
Sbjct: 478 YSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKE 523



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 69/162 (42%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           +A++ E+ E M++N       AY A++   + ER LD    +   MK+D +  +   Y +
Sbjct: 647 LADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTS 706

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+   CK         L   M  +G L +   Y  L+ G   EG+  +A ++ + L    
Sbjct: 707 LVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKE 766

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           Y  D  ++  II GL R    D  + +  +  Q    P   T
Sbjct: 767 YNTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMKCKPSDET 808


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 118/513 (23%), Positives = 218/513 (42%), Gaps = 31/513 (6%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           + ++P  V ++LK E NP  A   F    +  GY H    ++ +   L    L     ++
Sbjct: 6   KSLSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHVSRI 65

Query: 175 PELMDSQ-------------------GRIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLA 214
            EL+ +Q                       + L+I ++M     C+P + +Y +++  L 
Sbjct: 66  VELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALI 125

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
                D     +   +   +  ++  Y  LI   C+  +  +  EL   M E G   D  
Sbjct: 126 ESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVF 185

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
            YG LI  L   G +  A  L  ++ + G   D+  YN +I G  +      A +++E  
Sbjct: 186 SYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERL 245

Query: 335 VQD-DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KE 391
           ++   + P+  + N ++    + G+ D  F++  +M+K +     DL  +   + G    
Sbjct: 246 LKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNE--RGQDLYTYSTLIHGLCGS 303

Query: 392 ERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
             +  A  V++E+   G S  V +YN ++   L  G +++ L L+  M         +S+
Sbjct: 304 GNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRT-VVSY 362

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +I I+   E+  + EA      + E         Y  L  GLCK G ++ A+ ++ +   
Sbjct: 363 NILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAEN 422

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
                 T F Y+  I  +CR G  +++  VL++MT+ GC PN  +C+A+I+G  +   LE
Sbjct: 423 GRGDLDT-FAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLE 481

Query: 571 EARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           +A + F N+  +       T+V    LI  + K
Sbjct: 482 DALRFFGNMVSKGCFP---TVVTYNTLINGLSK 511



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 113/471 (23%), Positives = 209/471 (44%), Gaps = 34/471 (7%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA----DQVPE------------LM 178
           A +  +W  +Q G+  +  SY  L   L++N     A    D++PE            L+
Sbjct: 168 AKELLNWMWEQ-GFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILI 226

Query: 179 DS---QGRIAEMLEILEKMRRN-LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
           D    +G I    EI E++ +     P++ +Y  MI  L      D    +W  MKK+  
Sbjct: 227 DGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNER 286

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
             D+  Y TLI GLC  G +     +++EM ENG+  D  +Y  ++ G +  G++ +  +
Sbjct: 287 GQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLE 346

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           L K +   G R  +  YN +I GL    + D+A  ++E+  + D   D  T   L+    
Sbjct: 347 LWKVMEKEGCRTVVS-YNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLC 405

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKF-FEFLVG---KEERIMMALDVFEELKGKGYS 410
           + G ++    +L + E  +     DL+ F +  ++    +E R+     V +++   G  
Sbjct: 406 KNGYLNKALSILEEAENGR----GDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCK 461

Query: 411 SVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
             P + N ++   +   +++ AL  FG M         ++++  I    ++    EA   
Sbjct: 462 PNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYAL 521

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH-V 528
             +++     P++  Y+ L  GLC+  ++D A+ L   C         + K    I+H +
Sbjct: 522 VKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLW--CQALEKGFKPDVKMHNIIIHGL 579

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           C SG+ E  +++ +EM Q  C PN V  + ++ G  K    E A K++ ++
Sbjct: 580 CSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHI 630



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 164/354 (46%), Gaps = 7/354 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI E LE+ + M +  C+  V +Y  +IR L     +D  + +WE + +    AD M Y
Sbjct: 339 GRIEECLELWKVMEKEGCRT-VVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTY 397

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLCK G + +   +  E +     +D   Y  +I GL  EG++ +   +L  +  
Sbjct: 398 GVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTK 457

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + +  + N++I G  R  + + A + F   V     P   T N L+   ++  R   
Sbjct: 458 HGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSE 517

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
            + L+ +M  L      ++  +   + G  + +++ MAL+++ +   KG+   V ++NI+
Sbjct: 518 AYALVKEM--LHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNII 575

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L   G+V+ AL L+ +M+      N ++ +  ++   +  D   A +  + I++   
Sbjct: 576 IHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGP 635

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
            P + +YN   KGLC    I  A+  + D + +    PT   + + +  V  +G
Sbjct: 636 QPDIISYNITLKGLCSCHRISDAVGFLNDAV-DRGVLPTAITWNILVRAVLDNG 688



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 115/251 (45%), Gaps = 5/251 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E+  +L++M ++ CKP+     A+I        L+  LR +  M        V+ 
Sbjct: 442 EGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVT 501

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI GL K  R    + L +EM   G   +   Y +L+ GL    K+  A +L    +
Sbjct: 502 YNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQAL 561

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G++ D+ ++N II GLC   + + A +L+    Q    P+  T N L+    ++   +
Sbjct: 562 EKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFE 621

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNI 417
              K+   +  L++    D+  +   L G     RI  A+    +   +G     I +NI
Sbjct: 622 RASKIWDHI--LQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNI 679

Query: 418 LMGALLEIGEV 428
           L+ A+L+ G +
Sbjct: 680 LVRAVLDNGAL 690



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 18/110 (16%), Positives = 53/110 (48%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G++ + L++  +M++  C P++  +  ++      R+ +   ++W+ + +   + D++
Sbjct: 581 SSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDII 640

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
           +Y   + GLC   R+        +  + G+L     + +L+  ++  G +
Sbjct: 641 SYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVRAVLDNGAL 690


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 192/424 (45%), Gaps = 18/424 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E   + ++M    C+P    YT +I+ L     +D    +++EM     + +V  Y
Sbjct: 280 GRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTY 339

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GLC+ G++   + + R+M ++GI      Y  LI G   +G+V  A +LL  +  
Sbjct: 340 TVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEK 399

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              + ++  +N ++ GLCRV +  KA  L +  + + L+PD  + N L+      G M+ 
Sbjct: 400 RACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNV 459

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIY-NIL 418
            +KLL  M    F +  D   F   +    K+ +  +A      +  KG S   +    L
Sbjct: 460 AYKLLTSMN--SFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTL 517

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  +  +G+ + AL++   +  + +     S ++ +    +   + E      KI ++  
Sbjct: 518 IDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGL 577

Query: 479 VPSVAAYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           VPSV  Y  L  GL + G+I  +     +M +  CL NV      + Y + I  +C+ G 
Sbjct: 578 VPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNV------YPYTIIINGLCQFGR 631

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
            E+  ++L+ M   G  PN V  + ++ G   +G L+ A +    + ER    E N  +Y
Sbjct: 632 VEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGY--ELNDRIY 689

Query: 594 DEIL 597
             +L
Sbjct: 690 SSLL 693



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 123/564 (21%), Positives = 223/564 (39%), Gaps = 94/564 (16%)

Query: 77  KTFQLQRHL-SPIARFITDAFRKNQF---QWGPQVVTELSK-------------LRRVTP 119
           K   L+RH+  P   F + + R +QF   Q     V  L K             +  ++P
Sbjct: 10  KILALRRHVFPPYNAFFSVSSRPSQFSSDQVAAHNVASLLKSPNWEKNSSLKSLVSHMSP 69

Query: 120 DLVAEVLKVE-NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM 178
           ++ ++V+ ++ ++  +  +FF W  K   Y  +    N L   +  + LFR A  V    
Sbjct: 70  NVASQVISLQRSDNDICVRFFMWVCKHSSYCFDPTQKNQLLKLIVSSGLFRVAHDV---- 125

Query: 179 DSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA-AERNLDACLRVWEEMKK-DLVEA 236
                                        A+IR  +  E+ +   +  ++E+++      
Sbjct: 126 ---------------------------IVALIRECSRCEKEMLKLISCFDELREVSGFRL 158

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           +   Y +L+M L K       +  +R M+ +G ++    Y  ++  L   G    A   +
Sbjct: 159 NYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFM 218

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD-DLAPDFSTVNPLLVCCAE 355
             ++  G+  D  I  S++ G CR      A K+F++  ++   AP+  + + L+    E
Sbjct: 219 CKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCE 278

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPI 414
           +GR++  F L  QM +                                   KG   S   
Sbjct: 279 VGRLEEAFGLKDQMGE-----------------------------------KGCQPSTRT 303

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y +L+ AL + G + KA  LF +M     + N  ++++ I      G I EA     K++
Sbjct: 304 YTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMV 363

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           +    PSV  YN L  G CK G +  A  L+   +   A  P    +   +  +CR G+ 
Sbjct: 364 KDGIFPSVITYNALINGYCKDGRVVPAFELL-TVMEKRACKPNVRTFNELMEGLCRVGKP 422

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
            K + +L  M   G  P+ V  + +I G+C+ G +  A K+ T++    L  E + + + 
Sbjct: 423 YKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDL--EPDCLTFT 480

Query: 595 EILIEHMKKKTADLVLSGLKFFGL 618
            I+    K+  AD+  +   F GL
Sbjct: 481 AIINAFCKQGKADVASA---FLGL 501



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 134/299 (44%), Gaps = 7/299 (2%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           + +++    ++ E L +L K+ +    P V  YT ++  L    ++    R+ E MK   
Sbjct: 552 ILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSG 611

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
              +V  Y  +I GLC+ GRV    +L   M+++G+  +   Y V+++G V  GK+ +A 
Sbjct: 612 CLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRAL 671

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCR----VKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
           + ++ +V+ GY  +  IY+S++ G       +++ D       ++V + L    S +   
Sbjct: 672 ETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRETDPECIKELISVVEQLGGSTSGLCIF 731

Query: 350 LVC--CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK 407
           LV   C E GR D    L+  + K    +   ++   E    K++       +   LK  
Sbjct: 732 LVTRLCKE-GRTDESNGLVQTILKSGVFLEKAIDIIMESYCSKKKHTKCVELITLVLKSG 790

Query: 408 GYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
              S   + +++  L + G+ ++A  L  ++   N  V        ++C +E+GD  E 
Sbjct: 791 FVPSFKSFCLVIQGLKKEGDTERARELVMELLTSNGVVEKSGVLPYVECLMETGDCSEV 849



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 95/441 (21%), Positives = 180/441 (40%), Gaps = 26/441 (5%)

Query: 176 ELMDSQGRIAE---MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
           ELM+   R+ +    + +L++M  N   PD+ +Y  +I  L  E +++   ++   M   
Sbjct: 411 ELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSF 470

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            +E D + +  +I   CK G+          M   GI +D      LI+G+   GK   A
Sbjct: 471 DLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDA 530

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
             +L+ LV           N I+  L +  +  +   +     +  L P   T   L+  
Sbjct: 531 LFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDG 590

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV-----GKEERIMMALDVFEELKGK 407
               G +   F++L  M+     ++  L   + + +      +  R+  A  +   ++  
Sbjct: 591 LIRSGDISGSFRMLELMK-----LSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDS 645

Query: 408 GYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           G S   + Y +++   +  G++ +AL     M     E+N   +S  ++  V S   +  
Sbjct: 646 GVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRE 705

Query: 467 C--ECHNKIIE-MSQVPSVAAYNC--LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
              EC  ++I  + Q+    +  C  L   LCK G  D +  LV+  L    SG    + 
Sbjct: 706 TDPECIKELISVVEQLGGSTSGLCIFLVTRLCKEGRTDESNGLVQTIL---KSG-VFLEK 761

Query: 522 ALTIL--HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           A+ I+    C   +  K +E++  + + G  P+      +I G+ K G  E AR++   L
Sbjct: 762 AIDIIMESYCSKKKHTKCVELITLVLKSGFVPSFKSFCLVIQGLKKEGDTERARELVMEL 821

Query: 580 RERKLLTEANTIV-YDEILIE 599
                + E + ++ Y E L+E
Sbjct: 822 LTSNGVVEKSGVLPYVECLME 842


>gi|297736961|emb|CBI26162.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 120/521 (23%), Positives = 223/521 (42%), Gaps = 37/521 (7%)

Query: 85  LSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGK 144
           L  I + ++D  R    +W   ++++      + P  ++  ++ + N  ++ +FFHW   
Sbjct: 94  LEEIVKRVSDITRTRP-RWEQTLLSDFPSFNFLDPTFLSHFVEHQKNALISLRFFHWLSS 152

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP--- 201
           Q G+  + +S N L   L       AA    +  +   + A     LE   R LCK    
Sbjct: 153 QSGFSPDSSSCNVLFDALVEAGACNAAKSFLDSTNFNPKPAS----LEAYIRCLCKGGLV 208

Query: 202 ----DVFAYTAMIRVLAAERNLDACLR----------VWE---EMKKDLVEADVMAYVTL 244
                VF     I V A+    ++ LR          VWE   EM +  V ADV     L
Sbjct: 209 EEAISVFGQLKGIGVCASIATWNSVLRGSVRAGRIDFVWELYGEMVESSVVADVHTVGYL 268

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           +   C   R+  GH L R + E+G++   A +  LI G   +   G+  DLL  ++    
Sbjct: 269 VQAFCDENRISDGHNLLRRVLEDGVVPRNAAFNKLISGFCKDKAYGRVSDLLHSMIARNR 328

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  Y  ++ GLC+  +  + +++F+       APD      ++     M  + +  K
Sbjct: 329 APDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARK 388

Query: 365 LLAQMEKLKF-----SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNIL 418
           L  +M +  F     +  A +  +F+  +G  E    A  ++ E+  KGY    + YN++
Sbjct: 389 LWFEMIQKGFLPNEYTYNAMIHGYFK--IGNLEE---AWKMYREMCDKGYGEKTVSYNVM 443

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L   G++K+A  LF +M    +  N ++++  ++   + G I+E      ++++   
Sbjct: 444 IKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALVRGFCKEGKIVEGANLLYELLDQGI 503

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            PS A+Y  L   LC+ G++  A +L  D + N    P    +   I   C+ G A + +
Sbjct: 504 QPSAASYAPLIDKLCQEGDMQNAKILWDD-MQNRGMEPAVCTHDFMITGFCKQGCAMEGM 562

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           E L  M +    P +    ++I  + +   L++A  V  ++
Sbjct: 563 EWLTTMLRSKLRPQKKSFESLIQCLSQIDRLDDALLVLDSM 603



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 102/228 (44%), Gaps = 7/228 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+ + Y AMI       NL+   +++ EM         ++Y  +I GLC  G++   H+L
Sbjct: 400 PNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGLCSHGKIKEAHDL 459

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F EM   GIL +   Y  L+ G   EGK+ +  +LL +L+D G +     Y  +I  LC+
Sbjct: 460 FEEMSHKGILRNHITYNALVRGFCKEGKIVEGANLLYELLDQGIQPSAASYAPLIDKLCQ 519

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
                 A  L++      + P   T + ++    + G      + L  M + K       
Sbjct: 520 EGDMQNAKILWDDMQNRGMEPAVCTHDFMITGFCKQGCAMEGMEWLTTMLRSKLRPQ--- 576

Query: 381 EKFFEFLV---GKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
           +K FE L+    + +R+  AL V + +   G+  S+ I N L+  L E
Sbjct: 577 KKSFESLIQCLSQIDRLDDALLVLDSMLKIGFRLSISICNSLVTKLCE 624



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 133/331 (40%), Gaps = 43/331 (12%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR++++L  +    R    PD+F Y  ++  L          RV++++K      D + Y
Sbjct: 314 GRVSDLLHSMIARNR---APDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMY 370

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T+I GLC+   +    +L+ EM + G L +   Y  +I G    G + +A  + +++ D
Sbjct: 371 TTMIHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREMCD 430

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRM 359
            GY      YN +I GLC   +  +A+ LFE      +  +  T N L+   C       
Sbjct: 431 KGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALVRGFC------- 483

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
                                         KE +I+   ++  EL  +G   S   Y  L
Sbjct: 484 ------------------------------KEGKIVEGANLLYELLDQGIQPSAASYAPL 513

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L + G+++ A  L+  M+   +E    +    I    + G  +E  E    ++    
Sbjct: 514 IDKLCQEGDMQNAKILWDDMQNRGMEPAVCTHDFMITGFCKQGCAMEGMEWLTTMLRSKL 573

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
            P   ++  L + L +I  +D A++++   L
Sbjct: 574 RPQKKSFESLIQCLSQIDRLDDALLVLDSML 604



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 134/339 (39%), Gaps = 19/339 (5%)

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS-GYRADLGIYNSIIGGLCRVKQF 324
           ++G   D +   VL + LV  G    AC+  K  +DS  +        + I  LC+    
Sbjct: 153 QSGFSPDSSSCNVLFDALVEAG----ACNAAKSFLDSTNFNPKPASLEAYIRCLCKGGLV 208

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           ++A  +F       +    +T N +L      GR+D  ++L  +M  ++ SV AD+    
Sbjct: 209 EEAISVFGQLKGIGVCASIATWNSVLRGSVRAGRIDFVWELYGEM--VESSVVADVHTV- 265

Query: 385 EFLVG---KEERIMMALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKM 438
            +LV     E RI    ++   +   G   VP    +N L+    +     +   L   M
Sbjct: 266 GYLVQAFCDENRISDGHNLLRRVLEDGV--VPRNAAFNKLISGFCKDKAYGRVSDLLHSM 323

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
              N   +  ++   +    + G   E       + +    P    Y  +  GLC++  +
Sbjct: 324 IARNRAPDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWL 383

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
             A  L  + +      P E+ Y   I    + G  E+  ++  EM  +G     V  + 
Sbjct: 384 GDARKLWFEMIQK-GFLPNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYGEKTVSYNV 442

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +I G+C HG ++EA  +F  +  + +L   N I Y+ ++
Sbjct: 443 MIKGLCSHGKIKEAHDLFEEMSHKGILR--NHITYNALV 479



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 19/193 (9%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMD-------------------SQGRIAE 186
           KGY     SYN +   L  +   + A  + E M                     +G+I E
Sbjct: 431 KGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALVRGFCKEGKIVE 490

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
              +L ++     +P   +Y  +I  L  E ++     +W++M+   +E  V  +  +I 
Sbjct: 491 GANLLYELLDQGIQPSAASYAPLIDKLCQEGDMQNAKILWDDMQNRGMEPAVCTHDFMIT 550

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           G CK G  + G E    M  + +   +  +  LI+ L    ++  A  +L  ++  G+R 
Sbjct: 551 GFCKQGCAMEGMEWLTTMLRSKLRPQKKSFESLIQCLSQIDRLDDALLVLDSMLKIGFRL 610

Query: 307 DLGIYNSIIGGLC 319
            + I NS++  LC
Sbjct: 611 SISICNSLVTKLC 623



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 19/226 (8%)

Query: 145 QKGYKHNFASYNALAYCLSR-NNLFRAADQVPELMD------------------SQGRIA 185
           QKG+  N  +YNA+ +   +  NL  A     E+ D                  S G+I 
Sbjct: 395 QKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGLCSHGKIK 454

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E  ++ E+M       +   Y A++R    E  +     +  E+    ++    +Y  LI
Sbjct: 455 EAHDLFEEMSHKGILRNHITYNALVRGFCKEGKIVEGANLLYELLDQGIQPSAASYAPLI 514

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
             LC+ G +     L+ +M+  G+      +  +I G   +G   +  + L  ++ S  R
Sbjct: 515 DKLCQEGDMQNAKILWDDMQNRGMEPAVCTHDFMITGFCKQGCAMEGMEWLTTMLRSKLR 574

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
                + S+I  L ++ + D A  + +  ++       S  N L+ 
Sbjct: 575 PQKKSFESLIQCLSQIDRLDDALLVLDSMLKIGFRLSISICNSLVT 620


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 177/368 (48%), Gaps = 8/368 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G  A  L++  KM     K  V  Y+ +I  L  + + D  L ++ EM+   ++ADV+ 
Sbjct: 252 SGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVT 311

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI GLC  G+   G ++ REM    I+ D   +  LI+  V EGK+ +A +L  +++
Sbjct: 312 YSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMI 371

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D   YNS+I G C+     +A ++F++ V     PD  T + L+    +  R+D
Sbjct: 372 TRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVD 431

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNI 417
           +  +L  ++      +  +   +   ++G  +  ++  A ++F+E+  +G   SV  Y I
Sbjct: 432 DGMRLFREISSK--GLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 489

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L + GE+ KAL +F KM+   + +    ++I I     +  + +A      + +  
Sbjct: 490 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKG 549

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI-LHVCRSGEAEK 536
             P V  YN +  GLCK G +  A ML R  +      P +F Y + I  H+  SG    
Sbjct: 550 VKPDVVTYNVMIGGLCKKGSLSEADMLFRK-MKEDGCTPDDFTYNILIRAHLGGSGLISS 608

Query: 537 IIEVLNEM 544
            +E++ EM
Sbjct: 609 -VELIEEM 615



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 192/404 (47%), Gaps = 6/404 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR++E + ++++M     +PD+   + +I  L  +  +   L + + M +   + D + 
Sbjct: 182 EGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVT 241

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  ++  LCK G      +LFR+M+E  I      Y ++I+ L  +G    A  L  ++ 
Sbjct: 242 YGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME 301

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G +AD+  Y+S+IGGLC   ++D   K+    +  ++ PD  T + L+    + G++ 
Sbjct: 302 MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLL 361

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
              +L  +M  +   +A D   +   + G  KE  +  A  +F+ +  KG    +  Y+I
Sbjct: 362 EAKELYNEM--ITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI 419

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ +  +   V   + LF ++    L  N+++++  +    +SG +  A E   +++   
Sbjct: 420 LINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 479

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             PSV  Y  L  GLC  GE++ A+ +      +  +      Y + I  +C + + +  
Sbjct: 480 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGI-YNIIIHGMCNASKVDDA 538

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
             +   ++ +G  P+ V  + +I G+CK G+L EA  +F  ++E
Sbjct: 539 WSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 582



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/401 (22%), Positives = 177/401 (44%), Gaps = 2/401 (0%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ + +++ E M ++   P    +  +   +A  +  D  L   + M+ + +E D+    
Sbjct: 79  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 138

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            +I   C+  +++    +     + G   D   +  L+ G   EG+V +A  L+  +V+ 
Sbjct: 139 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 198

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
             R DL   +++I GLC   +  +A  L +  V+    PD  T  P+L    + G     
Sbjct: 199 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 258

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGA 421
             L  +ME+     +          + K+     AL +F E++ KG  + V  Y+ L+G 
Sbjct: 259 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG 318

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L   G+      +  +M G N+  + ++FS  I   V+ G +LEA E +N++I     P 
Sbjct: 319 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD 378

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
              YN L  G CK   +  A  +  D + +    P    Y++ I   C++   +  + + 
Sbjct: 379 TITYNSLIDGFCKENCLHEANQMF-DLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLF 437

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
            E++ +G  PN +  + ++ G C+ G L  A+++F  +  R
Sbjct: 438 REISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR 478



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 96/421 (22%), Positives = 191/421 (45%), Gaps = 11/421 (2%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PD   ++ ++     E  +   + + + M +     D++   TLI GLC  GRV     
Sbjct: 166 EPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALV 225

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L   M E G   D   YG ++  L   G    A DL + + +   +A +  Y+ +I  LC
Sbjct: 226 LIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLC 285

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +   FD A  LF       +  D  T + L+      G+ D+  K+L +M  +  ++  D
Sbjct: 286 KDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREM--IGRNIIPD 343

Query: 380 LEKFFEFL--VGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFG 436
           +  F   +    KE +++ A +++ E+  +G +   I YN L+    +   + +A  +F 
Sbjct: 344 VVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFD 403

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            M     E + +++SI I  + ++  + +      +I     +P+   YN L  G C+ G
Sbjct: 404 LMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSG 463

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           +++AA  L ++ +      P+   Y + +  +C +GE  K +E+  +M +        I 
Sbjct: 464 KLNAAKELFQEMVSR-GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIY 522

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKT---ADLVLSGL 613
           + II GMC    +++A  +F +L ++ +  + + + Y+ ++    KK +   AD++   +
Sbjct: 523 NIIIHGMCNASKVDDAWSLFCSLSDKGV--KPDVVTYNVMIGGLCKKGSLSEADMLFRKM 580

Query: 614 K 614
           K
Sbjct: 581 K 581



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 132/280 (47%), Gaps = 25/280 (8%)

Query: 99  NQFQW--GPQVVTELSKLRRVTPDLVA-----EVLKVENNPTLASKFFHWAGKQKGYKHN 151
           N  +W  G +++ E+   R + PD+V      +V  V+    L +K  +     +G   +
Sbjct: 321 NDGKWDDGAKMLREMIG-RNIIPDVVTFSALIDVF-VKEGKLLEAKELYNEMITRGIAPD 378

Query: 152 FASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIR 211
             +YN+L     + N    A+Q+ +LM S+G                C+PD+  Y+ +I 
Sbjct: 379 TITYNSLIDGFCKENCLHEANQMFDLMVSKG----------------CEPDIVTYSILIN 422

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
                + +D  +R++ E+    +  + + Y TL++G C+ G++    ELF+EM   G+  
Sbjct: 423 SYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPP 482

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
               YG+L++GL   G++ KA ++ + +  S     +GIYN II G+C   + D A+ LF
Sbjct: 483 SVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLF 542

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
                  + PD  T N ++    + G +     L  +M++
Sbjct: 543 CSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 582



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 20/203 (9%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
            KG   N  +YN L     ++    AA ++ + M S+G                    + 
Sbjct: 442 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 501

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + LEI EKM+++     +  Y  +I  +     +D    ++  +    V+ DV+ Y  +I
Sbjct: 502 KALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMI 561

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLCK G +     LFR+MKE+G   D   Y +LI   +G   +  + +L++++   G+ 
Sbjct: 562 GGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFS 621

Query: 306 ADLGIYNSIIGGLCRVKQFDKAY 328
           AD      +I  L   ++ DK++
Sbjct: 622 ADSSTIKMVIDMLSD-RRLDKSF 643


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 200/450 (44%), Gaps = 36/450 (8%)

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           ++M     +PD+F +  +I       +L+    V  ++ K     D +   TLI GLC  
Sbjct: 88  KQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLN 147

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           G+V        ++   G  +D+  YG LI GL   G+   A  +L+ +     + ++ +Y
Sbjct: 148 GKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMY 207

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N+II  LC+ K    A  L    +   + PD  T   L+  C  +GR+     L  QM  
Sbjct: 208 NTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQM-- 265

Query: 372 LKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEV 428
           L  ++  D+  F   + G  KE  +  A +V   +  +G  S++  YN LM     + + 
Sbjct: 266 LLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQE 325

Query: 429 KKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            KA ++F  M  RG+  +V S S  I   C  +  D  EA     ++   S  P+   YN
Sbjct: 326 NKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVD--EAVNLFKEMHSKSMAPNTVTYN 383

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L  GL K G I  A  LV + + N         Y+  +  +C++ + +K I ++ ++  
Sbjct: 384 SLIDGLLKYGRISDAWDLVNE-MHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKD 442

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE--HMKKK 604
           +G  PN    + ++ G+CK+G L++A+                  VY ++LI+  H+  K
Sbjct: 443 QGIQPNIYTYTILVDGLCKNGRLKDAQA-----------------VYQDLLIKGYHLDVK 485

Query: 605 TADLVLSGL-------KFFGLESKLKAKGC 627
             +++++GL       +   L SK++  GC
Sbjct: 486 MYNVMVNGLCKEGLFDEALSLVSKMEDNGC 515



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 188/422 (44%), Gaps = 22/422 (5%)

Query: 139 FHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNL 198
           FH     KG+  +  SY  L   L +    RAA                L++L K+   L
Sbjct: 156 FHDDVIAKGFHLDQVSYGTLINGLCKTGETRAA----------------LQVLRKIDGLL 199

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
            +P+V  Y  +I  L  ++ +     +  EM    +  DV+ Y TLI G    GR+    
Sbjct: 200 VQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAV 259

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            LF +M    I  D   + +L++GL  EG++ KA ++L  ++  G  +++  YNS++ G 
Sbjct: 260 GLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGY 319

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
             VKQ +KA  +F    +  + PD  + + ++    +   +D    L  +M     S+A 
Sbjct: 320 FLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSK--SMAP 377

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLF 435
           +   +   + G  K  RI  A D+  E+  +G  + V  Y+ L+ AL +  +V KA+ L 
Sbjct: 378 NTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLI 437

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            K++   ++ N  +++I +    ++G + +A   +  ++       V  YN +  GLCK 
Sbjct: 438 TKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKE 497

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G  D A+ LV     N    P    Y   +  +  + + +K +++L EM  +G      I
Sbjct: 498 GLFDEALSLVSKMEDN-GCIPDAVTYETLVRALFENDKNDKAVKLLREMIVQGSAVGSNI 556

Query: 556 CS 557
            S
Sbjct: 557 SS 558



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 195/417 (46%), Gaps = 16/417 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +     +L K+ +    PD    T +I+ L     +   L   +++       D ++Y
Sbjct: 113 GHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSY 172

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILI--DRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            TLI GLCK G      ++ R++  +G+L+  +  +Y  +I+ L  +  V  A DL  ++
Sbjct: 173 GTLINGLCKTGETRAALQVLRKI--DGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEM 230

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +      D+  Y ++I G   V +  +A  LF   +  ++ PD  T N L+    + G M
Sbjct: 231 IVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEM 290

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFE-----FLVGKEERIMMALDVFEELKGKGYS-SVP 413
                +LA M  +K  V +++  +       FLV +E +   A  VF  +  +G +  V 
Sbjct: 291 KKARNVLAVM--IKQGVDSNIVTYNSLMDGYFLVKQENK---ATFVFNTMARRGVTPDVQ 345

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            Y+I++  L +   V +A+ LF +M   ++  N+++++  I   ++ G I +A +  N++
Sbjct: 346 SYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEM 405

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
               Q   V  Y+ L   LCK  ++D A+ L+   + +    P  + Y + +  +C++G 
Sbjct: 406 HNRGQPADVITYSSLLDALCKNHQVDKAITLITK-IKDQGIQPNIYTYTILVDGLCKNGR 464

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            +    V  ++  +G   +  + + +++G+CK G  +EA  + + + +   + +A T
Sbjct: 465 LKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVT 521


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 189/406 (46%), Gaps = 48/406 (11%)

Query: 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
           +C P+ F Y  +IR  ++  +LD  +++ EEMK +  E + + + TL+ GLC  GRVV  
Sbjct: 4   ICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEA 63

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
            E FR M ++    D   Y  L+  L   GK  +A  +L++++  G   D   ++++I G
Sbjct: 64  LEHFRAMAKD-CAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDG 122

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
           LC+    ++A+++ E  +Q                   MG  D  F              
Sbjct: 123 LCKFGSEEQAFRVLEDVIQRG-----------------MGNSDAAF-------------- 151

Query: 378 ADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
              E   + L  K   + +A  V   +  KG++ +V ++N+++    +  ++  A  L  
Sbjct: 152 ---ETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLE 208

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            M       N  +F+I I    ++  + EA +   K++     P+V  Y+ +  GLCK G
Sbjct: 209 VMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQG 268

Query: 497 EIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
           ++D A     +M  R+C  NV +      + + I  +C++   E+  ++ + M + GC P
Sbjct: 269 QVDDAYELFQLMERRNCPPNVVT------HNILIDGLCKAKRIEEARQLYHRMRETGCAP 322

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           + +  +++I G+CK   ++EA ++F  + E   ++ AN + Y  + 
Sbjct: 323 DIITYNSLIDGLCKSFQVDEAFQLFQTIPESG-VSAANAVTYSTLF 367



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 197/424 (46%), Gaps = 22/424 (5%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E  ++LEKM    C P+V  Y+ +I  L  +  +D    +++ M++     +V+ + 
Sbjct: 234 RVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHN 293

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI GLCK  R+    +L+  M+E G   D   Y  LI+GL    +V +A  L + + +S
Sbjct: 294 ILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPES 353

Query: 303 GYRADLGI-YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           G  A   + Y+++  G   + +   A ++F + V    +PD +T   L++   +  R   
Sbjct: 354 GVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVE 413

Query: 362 FFKLLAQMEKLKF-----SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIY 415
             +L+ +M    F     +++A L   FE      ER   A+ +F+ +  +G +    IY
Sbjct: 414 VVELVEEMASKGFPPRVNTLSAVLGGLFEG--NHTER---AIQLFDSMAARGCTDDALIY 468

Query: 416 NILMGALLEIGEVKKALYLFGKM-----RGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           N+++  +    +  KAL +  ++     R  N   +++   +   C V   D  +A +  
Sbjct: 469 NLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTD--DAKQLL 526

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
           +K+ E     +V++YN L  GL ++   D A   V + + +    P      + I  +C 
Sbjct: 527 HKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQ-VFEAMVSAGPAPEISTVNVVISWLCS 585

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           + + +   E++  M++ GC P+   C+ +I G CK G  + ARK+   + E  L  E N 
Sbjct: 586 AAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGL--EPND 643

Query: 591 IVYD 594
             +D
Sbjct: 644 TTHD 647



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/489 (20%), Positives = 190/489 (38%), Gaps = 99/489 (20%)

Query: 140 HWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLC 199
           H+    K    +  +Y AL + L +   F  A         QG + EM+          C
Sbjct: 66  HFRAMAKDCAPDVMTYTALVHALCKAGKFDEA---------QGMLREMIA-------RGC 109

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEE-MKKDLVEAD--------------------- 237
            PD   ++ +I  L    + +   RV E+ +++ +  +D                     
Sbjct: 110 APDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELAS 169

Query: 238 --------------VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
                         V+ +  +I G CK   +   ++L   M E G + +   + +LI GL
Sbjct: 170 KVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGL 229

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
               +VG+A  LL+ +V  G   ++  Y+++I GLC+  Q D AY+LF++  + +  P+ 
Sbjct: 230 CKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNV 289

Query: 344 STVNPLL--VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVF 401
            T N L+  +C                                     K +RI  A  ++
Sbjct: 290 VTHNILIDGLC-------------------------------------KAKRIEEARQLY 312

Query: 402 EELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHV 458
             ++  G +  +  YN L+  L +  +V +A  LF  +   G++   N++++S     + 
Sbjct: 313 HRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVS-AANAVTYSTLFHGYA 371

Query: 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE 518
             G + +AC   + +++    P +A Y  L    CK       + LV + + +    P  
Sbjct: 372 ALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEE-MASKGFPPRV 430

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
              +  +  +      E+ I++ + M   GC  + +I + ++ GM +     +A  V   
Sbjct: 431 NTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQ 490

Query: 579 L---RERKL 584
           +   R+RK 
Sbjct: 491 VIDKRDRKF 499



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 57/134 (42%)

Query: 170 AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
           A D + E +   GR  +  ++L KM        V +Y  ++  L+  +  D   +V+E M
Sbjct: 505 AVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAM 564

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
                  ++     +I  LC   +V   +EL + M + G   D      LI G    G+ 
Sbjct: 565 VSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRA 624

Query: 290 GKACDLLKDLVDSG 303
             A  LL+++ ++G
Sbjct: 625 DLARKLLEEMTEAG 638


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 188/418 (44%), Gaps = 16/418 (3%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           RI E +++ EKM      PD ++Y  +I  LA    L+    +++++    V    +AY 
Sbjct: 303 RIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYT 362

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +LI GLC         ELF +M   G       Y V+I+     G + +ACDL+K +++ 
Sbjct: 363 SLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIED 422

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VC-------C 353
           G+  D+  YN+++ GLC+  + ++A  LF    +    P+  + N ++  +C        
Sbjct: 423 GHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQA 482

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL-KGKGYS 410
            + G++D  F+LL +M         D+  +   + G     R+  A  + E++ K +   
Sbjct: 483 CQRGKLDEAFRLLKRMTDDGH--VPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKP 540

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           +V   N L+  L + G +K+A  +   M       + ++++  +  H  +G    A E  
Sbjct: 541 TVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELL 600

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
           + ++     P+V  Y  L  GLCK   +  A  +    + +    P  F Y   IL  C 
Sbjct: 601 SDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQ-MKSSGCAPNLFTYTALILGFCS 659

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           +G+ +  +++  EM   G  P+ V+   + + +CK G    A ++    RE  L +EA
Sbjct: 660 AGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRE-SLRSEA 716



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 201/456 (44%), Gaps = 26/456 (5%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK------KDL 233
           S+G++ +  E+L  M    C PD  +Y  ++  L     ++  +R++ + +         
Sbjct: 224 SRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSS 283

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
               +  Y  +I+GLC+  R+    ++F +M E  +  D   YG+LI+GL   GK+  A 
Sbjct: 284 SPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDAR 343

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           +L + L+ SG       Y S+I GLC    FD A +LF    +    P   T N ++   
Sbjct: 344 NLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDAS 403

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS- 410
            + G ++    L+ +M  ++     D+  +   + G  K  R+  AL +F E++  G + 
Sbjct: 404 CKRGMLEEACDLIKKM--IEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTP 461

Query: 411 SVPIYNILMGALLEI---------GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           +   +N ++  L +          G++ +A  L  +M       + +++S  I       
Sbjct: 462 NRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIA 521

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
            + +A      +++    P+V   N L  GLCK G I  A  ++ D + +    P    Y
Sbjct: 522 RVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVL-DAMVSSGQSPDVVTY 580

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              +   CR+G+ E+  E+L++M   G  PN V  +A++SG+CK   L EA  VF  ++ 
Sbjct: 581 NTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKS 640

Query: 582 RKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFG 617
                  N   Y  +++        D    GLK FG
Sbjct: 641 SG--CAPNLFTYTALILGFCSAGQVD---GGLKLFG 671



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 185/410 (45%), Gaps = 27/410 (6%)

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
           AY  ++  L     +D  L +   M +  +     +  ++++GL   GR+    +++RE 
Sbjct: 147 AYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYREN 206

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           +    L+      VL+EG    G+V KA +LL+ + D     D   Y +++ GLC+  + 
Sbjct: 207 RREPCLV---TLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRV 263

Query: 325 DKAYKLF------EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           ++A +LF        +      P     N +++   +  R+D   ++  +M +   +V+ 
Sbjct: 264 EEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNER--NVSP 321

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
           D   +   + G  K  ++  A ++F++L   G + S   Y  L+  L        A  LF
Sbjct: 322 DSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELF 381

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             M       + +++++ I    + G + EAC+   K+IE   VP V  YN +  GLCK 
Sbjct: 382 ADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKS 441

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTIL---------HVCRSGEAEKIIEVLNEMTQ 546
             ++ A++L  + +  +   P    +   IL           C+ G+ ++   +L  MT 
Sbjct: 442 SRVEEALLLFNE-MERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTD 500

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK---LLTEANTIVY 593
           +G  P+ V  S +ISG+C    +++AR +  ++ +R+    +   NT+++
Sbjct: 501 DGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIH 550



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 132/302 (43%), Gaps = 13/302 (4%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G   N  S+N +   L + +    A Q       +G++ E   +L++M  +   PDV  Y
Sbjct: 458 GCTPNRRSHNTIILGLCQQSKIDQACQ-------RGKLDEAFRLLKRMTDDGHVPDVVTY 510

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           + +I  L +   +D    + E+M K   +  V+   TLI GLCK GR+    E+   M  
Sbjct: 511 STLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS 570

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           +G   D   Y  L+ G    G+  +A +LL D+V  G   ++  Y +++ GLC+  +  +
Sbjct: 571 SGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPE 630

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A  +F        AP+  T   L++     G++D   KL  +M     S    +      
Sbjct: 631 ACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAA 690

Query: 387 LVGKEERIMMALDVF----EELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM-RGL 441
            + K  R   AL++     E L+ + +    +Y   +  LLE G+++ AL     M RG 
Sbjct: 691 ELCKSGRSARALEILREGRESLRSEAWGD-EVYRFAVDGLLEAGKMEMALGFVRDMVRGG 749

Query: 442 NL 443
            L
Sbjct: 750 QL 751



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 102/441 (23%), Positives = 183/441 (41%), Gaps = 53/441 (12%)

Query: 182 GRIAEMLEILEKMRRNLCK---PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           GR  E ++I   M    C    PDV  Y  +I  L+  +  +A  ++ + M       D 
Sbjct: 24  GRTFEAVKIFSLMEE--CHSPYPDV--YNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDS 79

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGI----------------------------- 269
             + T++ GLCK G++     +  EM+   I                             
Sbjct: 80  FTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEI 139

Query: 270 --LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
             + + + Y +++  L    +V  A +L + + +       G  +S++ GL    + D+A
Sbjct: 140 MPVANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEA 199

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
            +++    ++   P   T+N LL      G++D   +LL  M   +   A D   +   L
Sbjct: 200 LQVYR---ENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEE--CAPDEVSYCTVL 254

Query: 388 VG--KEERIMMALDVF--EELKGKGYSSVPI-----YNILMGALLEIGEVKKALYLFGKM 438
            G  K  R+  A+ +F   EL     SS        YNI++  L +   + +A+ +F KM
Sbjct: 255 DGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKM 314

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
              N+  +S S+ I I    ++G + +A     K++     PS  AY  L  GLC     
Sbjct: 315 NERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSF 374

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D A  L  D +      P+   Y + I   C+ G  E+  +++ +M ++G  P+ V  + 
Sbjct: 375 DDARELFAD-MNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 433

Query: 559 IISGMCKHGTLEEARKVFTNL 579
           ++ G+CK   +EEA  +F  +
Sbjct: 434 VMDGLCKSSRVEEALLLFNEM 454



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 156/382 (40%), Gaps = 47/382 (12%)

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           + ++I G C  GR     ++F  M+E +    D  +Y VLI+ L    +      +++ +
Sbjct: 13  FTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPD--VYNVLIDSLSKRQETEAVKKMVQVM 70

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST-------------- 345
           VD G   D   + +I+ GLC+  + D+A  + +      + P F+T              
Sbjct: 71  VDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSM 130

Query: 346 -----------------VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
                             N ++V   +  R+D+  +L   M + +  +AA        LV
Sbjct: 131 ERAFQLLEIMPVANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAG--SLDSVLV 188

Query: 389 G--KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
           G     RI  AL V+ E   +    +   N+L+      G+V KA  L   M       +
Sbjct: 189 GLMDSGRIDEALQVYRE--NRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPD 246

Query: 447 SLSFSIAIQCHVESGDILEAC------ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
            +S+   +    ++G + EA       E  +     S  PS+  YN +  GLC+   ID 
Sbjct: 247 EVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDE 306

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A+ +    +      P  + Y + I  + ++G+      +  ++   G  P+ V  +++I
Sbjct: 307 AVQMFEK-MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLI 365

Query: 561 SGMCKHGTLEEARKVFTNLRER 582
            G+C   + ++AR++F ++  R
Sbjct: 366 HGLCMANSFDDARELFADMNRR 387



 Score = 42.0 bits (97), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 8/108 (7%)

Query: 480 PSVAAYNCLTKGLCKIGEIDAAM---MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
           P+   +  + +G C +G    A+    L+ +C       P    Y + I  + +  E E 
Sbjct: 8   PAPLLFTSVIQGWCNVGRTFEAVKIFSLMEEC-----HSPYPDVYNVLIDSLSKRQETEA 62

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           + +++  M   GC P+    + I+ G+CK G ++EA  V   +R R +
Sbjct: 63  VKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMI 110


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 119/451 (26%), Positives = 205/451 (45%), Gaps = 28/451 (6%)

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
           +L + +KM     KP++     +I        +     V+ ++ K     D + + TL  
Sbjct: 104 VLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSK 163

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC  G++ +      ++   G   D+  YG LI GL   G+   A DLL+ +  +  + 
Sbjct: 164 GLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQP 223

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           ++ +YN+II  +C+VK  ++A+ LF   V   ++PD  T + L+     +G++ +   L 
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLF 283

Query: 367 AQM--EKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
            +M  E +K  V       F  LV    K+ ++     VF+ +  +G   +   YN LM 
Sbjct: 284 NKMILENIKPDVYT-----FNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMD 338

Query: 421 ALLEIGEVKKALYLFGKMR--GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
               + EV KA  +F  M   G+N ++ S S  I   C ++  D  EA     ++   + 
Sbjct: 339 GYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFD--EAMNLFKEMHRKNI 396

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           +P V  Y+ L  GL K G I  A+ LV D + +    P    Y   +  +C++ + +K I
Sbjct: 397 IPDVVTYSSLIDGLSKSGRISYALQLV-DQMHDRGVPPNICTYNSILDALCKTHQVDKAI 455

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL--RERKLLTEANTIVYDEI 596
            +L +   +G  P+    S +I G+C+ G LE+ARKVF +L  +   L   A TI+    
Sbjct: 456 ALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGF 515

Query: 597 LIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
            +E +  +             L SK++  GC
Sbjct: 516 CVEGLFNEA----------LALLSKMEDNGC 536



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 186/417 (44%), Gaps = 22/417 (5%)

Query: 139 FHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNL 198
           FH      G+  +  SY  L + L +    RAA                L++L+++  NL
Sbjct: 177 FHDKVVALGFHFDQISYGTLIHGLCKVGETRAA----------------LDLLQRVDGNL 220

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
            +P+V  Y  +I  +   + ++    ++ EM    +  DV+ Y  LI G C  G++    
Sbjct: 221 VQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAI 280

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           +LF +M    I  D   + +L+     +GK+ +   +   ++  G + +   YNS++ G 
Sbjct: 281 DLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGY 340

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C VK+ +KA  +F    Q  + PD  + + ++    ++ + D    L  +M +   ++  
Sbjct: 341 CLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRK--NIIP 398

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLF 435
           D+  +   + G  K  RI  AL + +++  +G   ++  YN ++ AL +  +V KA+ L 
Sbjct: 399 DVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALL 458

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            K +    + +  ++SI I+   +SG + +A +    ++       V AY  + +G C  
Sbjct: 459 TKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVE 518

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           G  + A+ L+     N    P    Y + IL + +  E +   ++L EM   G P N
Sbjct: 519 GLFNEALALLSKMEDN-GCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLN 574



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 124/565 (21%), Positives = 236/565 (41%), Gaps = 41/565 (7%)

Query: 60  DPHYLPNQKTQSPPSDPKT-FQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSK----L 114
           D H++P +K QS      T F    + S    FI+ +     F     V   +S     L
Sbjct: 19  DSHFVP-KKFQSFQFLKNTHFNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLL 77

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWA------GKQKGYKHNFASYNALAYCLSRNNLF 168
           RR T     E  K+  +  + SK +H         + +G K N  + N L  C  +    
Sbjct: 78  RRNTTPPAFEFNKILGS-LVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQ---- 132

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
                        G I     +  K+ +    PD   +T + + L  +  +       ++
Sbjct: 133 ------------LGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDK 180

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           +       D ++Y TLI GLCK G      +L + +  N +  +  +Y  +I+ +     
Sbjct: 181 VVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKL 240

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           V +A DL  ++V  G   D+  Y+++I G C + +   A  LF   + +++ PD  T N 
Sbjct: 241 VNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNI 300

Query: 349 LLVCCAEMGRMDN----FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL 404
           L+    + G+M      F  ++ Q  K  F     L   +  +    + +  A  +F  +
Sbjct: 301 LVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLV----KEVNKAKSIFNTM 356

Query: 405 KGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
              G +  +  Y+I++    +I +  +A+ LF +M   N+  + +++S  I    +SG I
Sbjct: 357 AQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRI 416

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
             A +  +++ +    P++  YN +   LCK  ++D A+ L+     +    P    Y++
Sbjct: 417 SYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTK-FKDKGFQPDISTYSI 475

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I  +C+SG+ E   +V  ++  +G   +    + +I G C  G   EA  + + + +  
Sbjct: 476 LIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNG 535

Query: 584 LLTEANTIVYDEILIEHMKKKTADL 608
            + +A T  Y+ I++   KK   D+
Sbjct: 536 CIPDAKT--YEIIILSLFKKDENDM 558



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 3/185 (1%)

Query: 162 LSRNNLFRAADQVPELMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
           + R N+         L+D     GRI+  L+++++M      P++  Y +++  L     
Sbjct: 391 MHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQ 450

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
           +D  + +  + K    + D+  Y  LI GLC+ G++    ++F ++   G  +D   Y +
Sbjct: 451 VDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTI 510

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           +I+G   EG   +A  LL  + D+G   D   Y  II  L +  + D A KL    +   
Sbjct: 511 MIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARG 570

Query: 339 LAPDF 343
           L  +F
Sbjct: 571 LPLNF 575


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 192/422 (45%), Gaps = 10/422 (2%)

Query: 181 QGRIAEMLEILEKMRRN--LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           QG+  +  ++L  M     +C PDV AYT +I     E +++    +++EM +  +  D+
Sbjct: 199 QGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDL 258

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + Y +++  LCK   + +     R+M   G+L D   Y  LI G    G+  +A  + K+
Sbjct: 259 VTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKE 318

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +       D+   N ++G LC+  +  +A  +F+        PD  +   +L   A  G 
Sbjct: 319 MRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGC 378

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIY 415
           + +   L   M  L   +A D+  F   +       M+  A+ +F E++  G    V  Y
Sbjct: 379 LVDMTDLFDLM--LGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTY 436

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             ++ AL  IG++  A+  F +M    +  +  ++   IQ     G +L+A E   +I+ 
Sbjct: 437 TTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMN 496

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
                 +  ++ +   LCK+G I  A  +  D   NV   P    Y++ +   C  G+ E
Sbjct: 497 NGMRLDIVFFSSIINNLCKLGRIMDAQNIF-DLTVNVGQHPDAVVYSMLMDGYCLVGKME 555

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           K + V + M   G  PN V+   +++G CK G ++E   +F  + ++ +  + +TI+Y+ 
Sbjct: 556 KALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGI--KPSTILYNI 613

Query: 596 IL 597
           I+
Sbjct: 614 II 615



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 161/329 (48%), Gaps = 13/329 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + +M ++ + M  +   PD++ ++ +I+  A    LD  + ++ EM+   V+ DV+
Sbjct: 375 TKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVV 434

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I  LC+ G++    E F +M + G+  D+  Y  LI+G    G + KA +L+ ++
Sbjct: 435 TYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEI 494

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +++G R D+  ++SII  LC++ +   A  +F++TV     PD    + L+     +G+M
Sbjct: 495 MNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKM 554

Query: 360 DNFFKLLAQMEKLKFSVAADLEK---FFEFLVG---KEERIMMALDVFEELKGKGYS-SV 412
           +   ++   M      V+A +E     +  LV    K  RI   L +F E+  KG   S 
Sbjct: 555 EKALRVFDAM------VSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPST 608

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
            +YNI++  L   G    A   F +M    + +N  +++I ++   ++    EA     +
Sbjct: 609 ILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKE 668

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
           +  M+    +   N +  G+ +   ++ A
Sbjct: 669 LRAMNVKIDIITLNTMIAGMFQTRRVEEA 697



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 112/481 (23%), Positives = 195/481 (40%), Gaps = 56/481 (11%)

Query: 143 GKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           GK + +     +   L    + NNL            S G+  E + + ++MRR+   PD
Sbjct: 275 GKAEAFLRQMVNKGVLPDNWTYNNLIYG-------YSSTGQWKEAVRVFKEMRRHSILPD 327

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V     ++  L     +     V++ M       DV +Y  ++ G    G +V   +LF 
Sbjct: 328 VVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFD 387

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            M  +GI  D   + VLI+     G + KA  +  ++ D G + D+  Y ++I  LCR+ 
Sbjct: 388 LMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIG 447

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           + D A + F   +   +APD    + L+      G +    +L+  +E +   +  D+  
Sbjct: 448 KMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELI--LEIMNNGMRLDI-V 504

Query: 383 FFEFLVG---KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM 438
           FF  ++    K  RIM A ++F+     G +    +Y++LM     +G+++KAL +F  M
Sbjct: 505 FFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAM 564

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
               +E                                   P+V  Y  L  G CKIG I
Sbjct: 565 VSAGIE-----------------------------------PNVVVYGTLVNGYCKIGRI 589

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D  + L R+ L      P+   Y + I  +  +G         +EMT+ G   N+   + 
Sbjct: 590 DEGLSLFREMLQK-GIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNI 648

Query: 559 IISGMCKHGTLEEARKVFTNLRERKL---LTEANTIV---YDEILIEHMKKKTADLVLSG 612
           ++ G  K+   +EA  +F  LR   +   +   NT++   +    +E  K   A +  SG
Sbjct: 649 VLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSG 708

Query: 613 L 613
           L
Sbjct: 709 L 709



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 176/387 (45%), Gaps = 19/387 (4%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE- 259
           P    Y  ++         +  L  + ++ +  +  D++    L+ G C+  R     + 
Sbjct: 113 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDI 172

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY--RADLGIYNSIIGG 317
           L     E G + D   Y +L++ L  +GK G+A DLL+ + + G     D+  Y ++I  
Sbjct: 173 LLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDC 232

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAE-MGRMDNFFKLLAQMEKLKF 374
             +    +KA  LF+  VQ  + PD  T + ++  +C A  MG+ + F +     + +  
Sbjct: 233 FFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLR-----QMVNK 287

Query: 375 SVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKA 431
            V  D   +   + G     +   A+ VF+E++       V   N+LMG+L + G++K+A
Sbjct: 288 GVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEA 347

Query: 432 LYLFGK--MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
             +F    M+G N +V   S+ I +  +   G +++  +  + ++     P +  ++ L 
Sbjct: 348 RDVFDTMAMKGQNPDV--FSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLI 405

Query: 490 KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
           K     G +D AM++  + + +    P    Y   I  +CR G+ +  +E  N+M  +G 
Sbjct: 406 KAYANCGMLDKAMIIFNE-MRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGV 464

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVF 576
            P++     +I G C HG+L +A+++ 
Sbjct: 465 APDKYAYHCLIQGFCTHGSLLKAKELI 491



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 3/173 (1%)

Query: 177 LMDSQ---GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD     G++ + L + + M     +P+V  Y  ++        +D  L ++ EM +  
Sbjct: 544 LMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKG 603

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           ++   + Y  +I GL   GR V     F EM E+GI I++  Y +++ G        +A 
Sbjct: 604 IKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAI 663

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
            L K+L     + D+   N++I G+ + ++ ++A  LF    +  L P   TV
Sbjct: 664 FLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTV 716



 Score = 39.7 bits (91), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           N L KG C+    D A+ ++      +   P  F Y++ +  +C  G++ +  ++L  M 
Sbjct: 154 NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA 213

Query: 546 QEG--CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           + G  C P+ V  + +I    K G + +A  +F  + +R +
Sbjct: 214 EGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGI 254


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 196/421 (46%), Gaps = 8/421 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVM 239
           Q R+   L++L++M R+  +PDV  Y A++         +  +RVW+++ KD     ++ 
Sbjct: 206 QDRLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLA 265

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  ++ GLCK GR     E++  M  N +  D   YG+LI GL   G V  A  +  ++
Sbjct: 266 TYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEI 325

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           + +G   D  +YNS++ G C+  +  +A+K ++      L  +  T N ++    + G +
Sbjct: 326 IKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMV 384

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           D   +L   +EK   +   D   F   + G  +      A  +FEE +  G    V  Y+
Sbjct: 385 DEAIELWDLLEK-DVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYS 443

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++  L  +G +  A+ ++ KM     + NS  ++  I    +     +A   ++K+ + 
Sbjct: 444 SMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADN 503

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P+V  YN L  GLCK  +   A  + R+ + N    P    Y   I  +    + + 
Sbjct: 504 GCSPTVITYNTLIDGLCKAEKYQEASSVAREMVEN-GFTPDITTYGSLIRGLFSDKKIDD 562

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
            + +  ++  +G   + ++ + +I G+C  G ++EA  VF++++E+K     N + Y+ +
Sbjct: 563 ALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKK-NCPPNLVTYNTL 621

Query: 597 L 597
           +
Sbjct: 622 M 622



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 151/325 (46%), Gaps = 4/325 (1%)

Query: 177 LMDSQGRIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           L DS G + E +E+ + + +++ C PD   +  +I  L      +    ++EE +    +
Sbjct: 378 LFDS-GMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQ 436

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            DV +Y ++I GLC  GR+V   +++ +M ++G   +  IY  LI G     +   A  +
Sbjct: 437 LDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRI 496

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
              + D+G    +  YN++I GLC+ +++ +A  +    V++   PD +T   L+     
Sbjct: 497 YSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFS 556

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY--SSVP 413
             ++D+   +  Q+      V   +       +    ++  AL VF ++K K     ++ 
Sbjct: 557 DKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLV 616

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN LM  L E G + KA  L+  +    LE + +S++  I+       I E  +  +++
Sbjct: 617 TYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEV 676

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEI 498
           +    +P+V  +N L + + K G I
Sbjct: 677 LSRGIIPTVITWNILVRAVIKYGPI 701



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/461 (22%), Positives = 185/461 (40%), Gaps = 89/461 (19%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K  G + N A+YN +   L +                 GR  E+ E+ E+M  N  +PDV
Sbjct: 256 KDPGARPNLATYNVMLDGLCKF----------------GRFKEVGEVWERMVANNLQPDV 299

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF-- 261
             Y  +I  L    ++D   RV+ E+ K  +  D   Y +L+ G C+ GRV    + +  
Sbjct: 300 ITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDS 359

Query: 262 ------REMKENGILI---------------------------DRAIYGVLIEGLVGEGK 288
                 R ++   I+I                           D   +G LI GL   G 
Sbjct: 360 AGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGF 419

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
             KA  + ++   SG + D+  Y+S+I GLC V +   A K++E   +D   P+    N 
Sbjct: 420 ANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNA 479

Query: 349 LLVCCAEMGRMDNFFKLLAQM---------------------------------EKLKFS 375
           L+    ++ R  +  ++ ++M                                 E ++  
Sbjct: 480 LISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENG 539

Query: 376 VAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
              D+  +   + G   +++I  AL +++++  KG    V ++NIL+  L   G+V +AL
Sbjct: 540 FTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEAL 599

Query: 433 YLFGKMR-GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
           ++F  M+   N   N ++++  +    E+G I +A      I E    P + +YN   KG
Sbjct: 600 HVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKG 659

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           LC    I   + L+ + L      PT   + + +  V + G
Sbjct: 660 LCSCDRIHEGIQLLDEVLSR-GIIPTVITWNILVRAVIKYG 699



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 181/393 (46%), Gaps = 15/393 (3%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL----VEADVMAYVTLIMGLCKGGRV 254
           C P + ++ A++      R        +  +        +  ++  Y  ++  LC  G +
Sbjct: 115 CNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDL 174

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
            R   LF  ++   +  DR  Y  L+ GL  + ++  A DLL ++  S  + D+  YN++
Sbjct: 175 DRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNAL 234

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLA-PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           +GG  +  +F+K  ++++  V+D  A P+ +T N +L    + GR     ++  +M  + 
Sbjct: 235 LGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERM--VA 292

Query: 374 FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKK 430
            ++  D+  +   + G  +   +  A  V+ E+   G      +YN L+    + G V++
Sbjct: 293 NNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQE 352

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI-IEMSQVPSVAAYNCLT 489
           A + F    G     N  +++I I+   +SG + EA E  + +  +++ +P    +  L 
Sbjct: 353 A-WKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLI 411

Query: 490 KGLCKIGEIDAAMMLVRDCLGNVASGPTE-FKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
            GLC+ G  + A  +  +    V+    + F Y+  I  +C  G     ++V  +M ++G
Sbjct: 412 HGLCQNGFANKAFTIFEE--ARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDG 469

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           C PN  I +A+ISG C+     +A ++++ + +
Sbjct: 470 CKPNSHIYNALISGFCQVYRTSDAVRIYSKMAD 502



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 125/252 (49%), Gaps = 6/252 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + +++ EKM ++ CKP+   Y A+I            +R++ +M  +     V+ Y
Sbjct: 453 GRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITY 512

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI GLCK  +      + REM ENG   D   YG LI GL  + K+  A  + K ++ 
Sbjct: 513 NTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILY 572

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            G + D+ ++N +I GLC   + D+A  +F ++  + +  P+  T N L+    E G +D
Sbjct: 573 KGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYID 632

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
               L   +   +  +  D+  +   + G    +RI   + + +E+  +G   +V  +NI
Sbjct: 633 KAATLWTSIT--EDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNI 690

Query: 418 LMGALLEIGEVK 429
           L+ A+++ G ++
Sbjct: 691 LVRAVIKYGPIQ 702


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/453 (23%), Positives = 192/453 (42%), Gaps = 57/453 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++KG K N  +YN++   L +                 GR+ E  ++L  M+     PD 
Sbjct: 314 QRKGLKPNQYTYNSIISFLCKT----------------GRVVEAEQVLRVMKNQRIFPDN 357

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT +I       N+    ++++EMK+  +  D + Y ++I GLC+ G+VV   +LF E
Sbjct: 358 VVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSE 417

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M   G+  D   Y  LI+G    G++ +A  L   +V+ G   ++  Y +++ GLC+  +
Sbjct: 418 MLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGE 477

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            D A +L     +  L P+  T N L+    ++G ++   KL+ +M         DL  F
Sbjct: 478 VDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEM---------DLAGF 528

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           F                              Y  +M A  ++GE+ KA  L   M    L
Sbjct: 529 F-------------------------PDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGL 563

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
           +   ++F++ +     SG + +       +++   +P+   +N L K  C    + A + 
Sbjct: 564 QPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIE 623

Query: 504 LVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           + +   G  A G  P    Y + I   C++   ++   +  EM ++G        +++I 
Sbjct: 624 IYK---GMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIK 680

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           G  K    EEARK+F  +R    + E    +YD
Sbjct: 681 GFYKRKKFEEARKLFEEMRTHGFIAEKE--IYD 711



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 177/376 (47%), Gaps = 6/376 (1%)

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
           +    RV+ E  +  V  + ++Y  ++  LC+ G+V   H L  +M+  G + D   Y V
Sbjct: 233 IRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSV 292

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           +++G     ++GK   L+++L   G + +   YNSII  LC+  +  +A ++  V     
Sbjct: 293 IVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQR 352

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMM 396
           + PD      L+    + G +   +KL  +M++ K  +  D   +   + G  +  +++ 
Sbjct: 353 IFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKK--IVPDFVTYTSMIHGLCQAGKVVE 410

Query: 397 ALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A  +F E+  KG     + Y  L+    + GE+K+A  L  +M    L  N ++++  + 
Sbjct: 411 ARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVD 470

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
              + G++  A E  +++ E    P+V  YN L  GLCK+G I+ A+ L+ + +      
Sbjct: 471 GLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEE-MDLAGFF 529

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    Y   +   C+ GE  K  E+L  M  +G  P  V  + +++G C  G LE+  ++
Sbjct: 530 PDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERL 589

Query: 576 FTNLRERKLLTEANTI 591
              + ++ ++  A T 
Sbjct: 590 IKWMLDKGIMPNATTF 605



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 105/457 (22%), Positives = 203/457 (44%), Gaps = 14/457 (3%)

Query: 152 FASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIR 211
           F  Y+ +  C +      + + +  L+   G++ E   +L +M      PDV +Y+ ++ 
Sbjct: 240 FREYSEVGVCWNT----VSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVD 295

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
                  L   L++ EE+++  ++ +   Y ++I  LCK GRVV   ++ R MK   I  
Sbjct: 296 GYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFP 355

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           D  +Y  LI G    G V     L  ++       D   Y S+I GLC+  +  +A KLF
Sbjct: 356 DNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLF 415

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG-- 389
              +   L PD  T   L+    + G M   F L  QM  ++  +  ++  +   + G  
Sbjct: 416 SEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQM--VEKGLTPNVVTYTALVDGLC 473

Query: 390 KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           K   + +A ++  E+  KG   +V  YN L+  L ++G +++A+ L  +M       +++
Sbjct: 474 KCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTI 533

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           +++  +  + + G++ +A E    +++    P++  +N L  G C  G ++    L++  
Sbjct: 534 TYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWM 593

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
           L +    P    +   +   C        IE+   M  +G  P+    + +I G CK   
Sbjct: 594 L-DKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARN 652

Query: 569 LEEARKVFTNLRERKL-LTEANTIVYDEILIEHMKKK 604
           ++EA  +   + E+   LT A+   Y+ ++    K+K
Sbjct: 653 MKEAWFLHKEMVEKGFSLTAAS---YNSLIKGFYKRK 686



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 105/213 (49%), Gaps = 10/213 (4%)

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALL-EIGEVKKALYLFGKMRG 440
           FF+ LV +   ++ A  +F++L   G   SV   N+ +  L      ++ A  +F +   
Sbjct: 187 FFQVLV-EAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDGIRTAFRVFREYSE 245

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM---SQVPSVAAYNCLTKGLCKIGE 497
           + +  N++S++I +    + G + EA   H+ +I+M     VP V +Y+ +  G C++ +
Sbjct: 246 VGVCWNTVSYNIILHLLCQLGKVKEA---HSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQ 302

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           +   + L+ + L      P ++ Y   I  +C++G   +  +VL  M  +   P+ V+ +
Sbjct: 303 LGKVLKLMEE-LQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYT 361

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            +ISG  K G +    K+F  ++ +K++ +  T
Sbjct: 362 TLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVT 394



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 86/188 (45%), Gaps = 43/188 (22%)

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV------------------------- 482
           L F +  Q  VE+G +LEA +  +K++    + SV                         
Sbjct: 182 LVFDVFFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDGIRTAFRVFR 241

Query: 483 -----------AAYNCLTKGLCKIGEIDAA--MMLVRDCLGNVASGPTEFKYALTILHVC 529
                       +YN +   LC++G++  A  +++  +  GNV   P    Y++ +   C
Sbjct: 242 EYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNV---PDVVSYSVIVDGYC 298

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           +  +  K+++++ E+ ++G  PN+   ++IIS +CK G + EA +V   ++ +++    +
Sbjct: 299 QVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIF--PD 356

Query: 590 TIVYDEIL 597
            +VY  ++
Sbjct: 357 NVVYTTLI 364


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 124/534 (23%), Positives = 228/534 (42%), Gaps = 60/534 (11%)

Query: 132 PTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEIL 191
           P LA++  H   ++   + +  + NA+   L+R     +    P+           L++ 
Sbjct: 153 PHLAAQLLHSFRRRGHVRPSLQAANAVLSALAR-----SPSTSPQ---------ASLDVF 198

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
             +      P+ + +  ++    ++  L   L     M+   +  DV+ Y TL+   C+ 
Sbjct: 199 RSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRK 258

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           G +     L   MK+ GI   RA Y  L+      G + +A ++++ +   G+  DL  Y
Sbjct: 259 GMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTY 318

Query: 312 NSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           N +  GLC+  + D+A+KL  E+     ++PD  T N L+  C +  R  +   LL +M 
Sbjct: 319 NVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMR 378

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVK 429
                 +          + +E ++  AL   + +  +G +  V  YN L+ A  +   V 
Sbjct: 379 DKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVA 438

Query: 430 KALYLFGKM--RGLNLEVNSLSFSIAIQC-----------------------HVESGDIL 464
           KA  L  +M   GL ++  +L+  +   C                        V  G ++
Sbjct: 439 KAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVM 498

Query: 465 EACECHNK-------IIEMSQ---VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
            A    NK         EMS+    PS+  YN L KGLC IG++  A+  + + +     
Sbjct: 499 AAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKK-GL 557

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P +  Y + I   C+ G+ EK  +  N+M +    P+ V C+ +++G+C HG LE+A K
Sbjct: 558 VPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIK 617

Query: 575 VFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
           +F +  E+    + + I Y+ ++    K    D   + L FF   + ++A+G +
Sbjct: 618 LFESWAEKG--KKVDVITYNTLIQALCKDGDVD---TALHFF---ADMEARGLQ 663



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/466 (22%), Positives = 200/466 (42%), Gaps = 59/466 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS-------------------QGRI 184
           K++G     A+YN L    +R    + A  V E M +                    G++
Sbjct: 272 KKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKV 331

Query: 185 AEMLEILEKMRR-NLCKPDVFAYTAMIRV-LAAERNLDACLRVWEEMKKDLVEADVMAYV 242
            E  ++ ++M   ++  PDV  Y  ++      +R+ DA L + EEM+   V++ ++ + 
Sbjct: 332 DEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDA-LNLLEEMRDKGVKSSLVTHN 390

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++ GLC+ G++       + M E G+  D   Y  LI+       V KA  L+ ++V S
Sbjct: 391 IVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRS 450

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + D    N+++  LC+ K++++A +L     Q    PD                    
Sbjct: 451 GLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPD-------------------- 490

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL-KGKGYSSVPIYNILMGA 421
                     + S    +  +F     KE +   AL +++E+ K K   S+  YN L+  
Sbjct: 491 ----------EVSYGTVMAAYF-----KENKPEPALYLWDEMSKRKLTPSIYTYNTLIKG 535

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L  IG++ +A+    ++    L  +  +++I I  + + GD+ +A + HNK++E    P 
Sbjct: 536 LCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPD 595

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V   N L  GLC  G+++ A+ L  +             Y   I  +C+ G+ +  +   
Sbjct: 596 VVTCNTLMNGLCLHGKLEKAIKLF-ESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFF 654

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
            +M   G  P+    + ++S + + G  EEA+ +   L E   L+E
Sbjct: 655 ADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSE 700



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 181/437 (41%), Gaps = 45/437 (10%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           + KG K +  ++N +   L R                +G++ E L  L+ M      PDV
Sbjct: 378 RDKGVKSSLVTHNIVVKGLCR----------------EGQLEEALGRLKMMTEEGLAPDV 421

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  +I      RN+     + +EM +  ++ D     TL+  LCK  R     EL R 
Sbjct: 422 ITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRS 481

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
             + G + D   YG ++     E K   A  L  ++        +  YN++I GLC + +
Sbjct: 482 PPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGK 541

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
             +A       ++  L PD +T N ++    + G ++  F+   +M          LE +
Sbjct: 542 LTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKM----------LENY 591

Query: 384 FE-------------FLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVK 429
           F+              L GK E+   A+ +FE    KG    V  YN L+ AL + G+V 
Sbjct: 592 FKPDVVTCNTLMNGLCLHGKLEK---AIKLFESWAEKGKKVDVITYNTLIQALCKDGDVD 648

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
            AL+ F  M    L+ ++ ++++ +    E+G   EA    +K+ E  ++    +Y  L 
Sbjct: 649 TALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSERFSYP-LI 707

Query: 490 KGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
           K   +  +      +  DC  G  A G  +  Y  ++  +C  G+ ++   VL+EM Q+G
Sbjct: 708 KSSAEEVKTGKDPEVKSDCESGGNAKGGDQESYNKSVKELCVGGQLKEAKAVLDEMMQKG 767

Query: 549 CPPNEVICSAIISGMCK 565
              +      ++ G+ K
Sbjct: 768 MSVDSSTYITLMEGLIK 784


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/447 (25%), Positives = 189/447 (42%), Gaps = 45/447 (10%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           + + GR AE   +L       C PDV AY AM+        LDA  R+  EM    VE D
Sbjct: 106 LSASGRTAEARRVLAA-----CGPDVMAYNAMVAGYCGAGQLDAARRLVAEMP---VEPD 157

Query: 238 VMAYVTLIMGLCKGGRVV-----------------------------------RGHELFR 262
              Y TLI GLC  GR                                     +  +L  
Sbjct: 158 AYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLD 217

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EM++ G   D   Y V++ G+  EG+V  A + LK+L   G   +   YN ++ GLC  +
Sbjct: 218 EMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAE 277

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           +++ A +L     Q    P+  T N L+      G ++   ++L Q+ K   +  +    
Sbjct: 278 RWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYN 337

Query: 383 FFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
                  K++++  A+   + +  +G Y  +  YN L+ AL   GEV  A+ L  +++  
Sbjct: 338 PLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDK 397

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
                 +S++  I    ++G   EA E  N+++     P +  Y+ +  GLC+   I+ A
Sbjct: 398 GCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDA 457

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           +      + ++   P    Y   IL +C+  E    I++   M   GC PNE   + +I 
Sbjct: 458 IRAFGK-VQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIE 516

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEA 588
           G+   G ++EAR +   L  R ++ ++
Sbjct: 517 GLAYEGLIKEARDLLDELCSRGVVRKS 543



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 16/207 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           QKG   N  ++N L   L R  L   A                LE+LE++ +  C P+  
Sbjct: 291 QKGCPPNVVTFNMLISFLCRKGLVEPA----------------LEVLEQIPKYGCTPNSL 334

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
           +Y  ++     ++ +D  +   + M       D+++Y TL+  LC+ G V    EL  ++
Sbjct: 335 SYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQL 394

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K+ G       Y  +I+GL   GK  +A +LL ++V  G + D+  Y++I  GLCR  + 
Sbjct: 395 KDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRI 454

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           + A + F       + P+    N +++
Sbjct: 455 EDAIRAFGKVQDMGIRPNTVLYNAIIL 481


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 120/513 (23%), Positives = 220/513 (42%), Gaps = 37/513 (7%)

Query: 112 SKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFR-- 169
           SK+  ++P +V  ++K   N  L  +FF WA K +  + ++ S+N +   L ++N F   
Sbjct: 52  SKVPFLSPSIVTYIIKNPPNSLLGFRFFIWASKFRRLR-SWVSHNMIIDMLIKDNGFELY 110

Query: 170 --------------AADQVPELMDSQGR---IAEMLEILEKMRRNLCKPDVFAYTAMIRV 212
                         +AD    L+ +  +   I + +E  E M+   CKPDVF Y  ++ V
Sbjct: 111 WQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHV 170

Query: 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           +  +  +   L ++  M K     ++  +  LI G+CK G+     ++F EM +  IL +
Sbjct: 171 MVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPN 230

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
           +  Y ++I GL    K   A  L   + D G   D   YN+++ G C++ + D+A  L +
Sbjct: 231 KITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLK 290

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392
              +D    D    + L+       R ++      +M +        L       + K  
Sbjct: 291 YFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAG 350

Query: 393 RIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
           +   AL +  E+  +G       YN L+    ++G + +A  L  ++   +   ++ +++
Sbjct: 351 KFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYT 410

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
           I I     SG + +A +  N++ +    PSV  +N L  G CK G I+ A +L       
Sbjct: 411 ILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKM--E 468

Query: 512 VASGPTEF--------------KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           +   P+ F                   +  +C SG   K   +L ++T  G  PN +  +
Sbjct: 469 IGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYN 528

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            +I G CK G +  A K+F  L+ + L  ++ T
Sbjct: 529 ILIHGFCKAGNINGAFKLFKELQLKGLSPDSVT 561



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 118/528 (22%), Positives = 212/528 (40%), Gaps = 51/528 (9%)

Query: 84  HLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVE-----NNPTLASKF 138
           +++  +  I    +  + Q   Q+  E+++ RR+ P+ +   + +          +A + 
Sbjct: 195 NIATFSILIDGMCKSGKTQNALQMFDEMTQ-RRILPNKITYTIIISGLCQAQKADVAYRL 253

Query: 139 FHWAGKQKGYKHNFASYNAL--AYC-LSRNN----LFRAADQVPELMDSQG--------- 182
           F  A K  G   +  +YNAL   +C L R +    L +  ++   ++D QG         
Sbjct: 254 F-IAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLF 312

Query: 183 ---RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
              R  +      KM  +  KPDV  YT M++ L+        LR+  EM +  +  D  
Sbjct: 313 RARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTH 372

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI G C  G +     L  E+ +N        Y +LI G+   G VG A  +  ++
Sbjct: 373 CYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEM 432

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G    +  +N++I G C+    +KA  LF                       E+GR 
Sbjct: 433 EKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKM--------------------EIGRN 472

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
            + F  L+Q        A+ L+   E L      I+ A ++  +L   G++ ++  YNIL
Sbjct: 473 PSLFLRLSQGANRVLDTAS-LQTMVEQLC-DSGLILKAYNILMQLTDSGFAPNIITYNIL 530

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G +  A  LF +++   L  +S+++   I   + +    +A    ++I++   
Sbjct: 531 IHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGC 590

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P    Y       C+  +I  A  L    L ++    +E     ++      GE E+ +
Sbjct: 591 TPITEVYKSFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEV--LKSVEENFEKGEVEEAV 648

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
             L EM  +         +  + G+C+ G LEEA K+F  L E  +L 
Sbjct: 649 RGLLEMDFKLNDFQLAPYTIWLIGLCQAGRLEEALKIFFTLEEHNVLV 696



 Score = 39.7 bits (91), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 116/279 (41%), Gaps = 10/279 (3%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           V +L DS G I +   IL ++  +   P++  Y  +I       N++   ++++E++   
Sbjct: 496 VEQLCDS-GLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKG 554

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  D + Y TLI GL    R      +  ++ +NG      +Y   +       K+  A 
Sbjct: 555 LSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEVYKSFMTWSCRRNKITLAF 614

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD---LAPDFSTVNPLL 350
            L    + S    D  +  S+     + +  +    L E+  + +   LAP        L
Sbjct: 615 SLWLKYLRSIPGRDSEVLKSVEENFEKGEVEEAVRGLLEMDFKLNDFQLAP----YTIWL 670

Query: 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS 410
           +   + GR++   K+   +E+    V         + + K   + +A ++F     KGY 
Sbjct: 671 IGLCQAGRLEEALKIFFTLEEHNVLVTPPSCVKLIYRLLKVGNLDLAAEIFLYTIDKGYM 730

Query: 411 SVP-IYNILMGALLEIGEVK-KALYLFGKMRGLNLEVNS 447
            +P I N L+ +LL   + + +A  L  +M+ L  +++S
Sbjct: 731 LMPRICNRLLKSLLRSEDKRNRAFDLLSRMKSLGYDLDS 769


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 179/401 (44%), Gaps = 6/401 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G     + +++ M     KP +  Y ++++ L      D    V++EM    V  DV ++
Sbjct: 144 GDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSF 203

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G C+ G +    ++++EM+  GI  D   +  LI      GK+  A   L+++  
Sbjct: 204 TILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRC 263

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D  IY  +IGG CR      A ++ +  V     PD  T N LL    +  R+ +
Sbjct: 264 FGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLD 323

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEE-LKGKGYSSVPIYNIL 418
              LL +M +    V  DL  F   + G   E ++  AL +F+  L  +    +  YN L
Sbjct: 324 AEGLLNEMRER--GVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTL 381

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  +   G++ KA  L+  M    +  N +++SI I  H E G + +A    +++I    
Sbjct: 382 IDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGI 441

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           +P++  YN + KG C+ G +      ++  + N  S P    Y   I    +  +     
Sbjct: 442 LPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVS-PDLITYNTLIHGYIKEDKMHDAF 500

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           ++LN M +E   P+ V  + +I+G   HG ++EA  +F  +
Sbjct: 501 KLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKM 541



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 176/402 (43%), Gaps = 11/402 (2%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           + +    M+         D    V  EM+K  V  DV+ +  ++    + G       L 
Sbjct: 94  NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 153

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             M   G+      Y  +++GL   G   KA ++ K++ D G   D+  +  +IGG CRV
Sbjct: 154 DSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRV 213

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            + ++A K+++      + PD  + + L+   A  G+MD+    L +M    F +  D  
Sbjct: 214 GEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMR--CFGLVPD-G 270

Query: 382 KFFEFLVGKEERIMM---ALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGK 437
             +  ++G   R  +   AL V +E+ G G    V  YN L+  L +   +  A  L  +
Sbjct: 271 VIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNE 330

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           MR   +  +  +F+  I  +   G + +A +  + ++     P +  YN L  G+C+ G+
Sbjct: 331 MRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 390

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           +D A  L  D + +    P    Y++ I   C  G+ E     L+EM  +G  PN +  +
Sbjct: 391 LDKANDLWDD-MHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYN 449

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIVYDEI 596
           +II G C+ G + + +K    +   K+   L   NT+++  I
Sbjct: 450 SIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYI 491



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 123/560 (21%), Positives = 230/560 (41%), Gaps = 66/560 (11%)

Query: 100 QFQWGPQVVTELSKLRRVTPDLVAEVLKVEN----NPTLASKFFHWAGKQKGYKHNFASY 155
           +F     V++E+ K R V PD+V   + V+         A+     +   KG K    +Y
Sbjct: 110 EFDKVDAVISEMEK-RCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTY 168

Query: 156 NALAYCLSRNNLFRAADQVPELMDS-------------------QGRIAEMLEILEKMRR 196
           N++   L R+ ++  A +V + MD                     G I E L+I ++MR 
Sbjct: 169 NSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRH 228

Query: 197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
              KPD+ +++ +I + A    +D  +    EM+   +  D + Y  +I G C+ G +  
Sbjct: 229 RGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSD 288

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
              +  EM   G L D   Y  L+ GL  E ++  A  LL ++ + G   DL  + ++I 
Sbjct: 289 ALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIH 348

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           G C   + DKA +LF+  +   L PD  T N L+      G +D                
Sbjct: 349 GYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDK--------------- 393

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLF 435
                               A D+++++  +  + +   Y+IL+ +  E G+V+ A    
Sbjct: 394 --------------------ANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFL 433

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M    +  N ++++  I+ +  SG++ +  +   K++     P +  YN L  G  K 
Sbjct: 434 DEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKE 493

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
            ++  A  L+ + +      P    Y + I      G  ++   +  +M  +G  P+   
Sbjct: 494 DKMHDAFKLL-NMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYT 552

Query: 556 CSAIISGMCKHGTLEEARKVFTNL--RERKLLTEANTIVYDEIL--IEHMKKKTADL-VL 610
             ++I+G    G  +EA ++   +  R ++    A T+ +  I    E +K+   DL V 
Sbjct: 553 YMSMINGHVTAGNSKEAFQLHDEMLQRGKEKRRAAGTVQFVNIQNSAESLKQMPMDLKVT 612

Query: 611 SGLKFFGLESKLKAKGCKLL 630
             + FF    +   +GC  +
Sbjct: 613 CSIYFFAKTQEFAIRGCAFV 632



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 71/350 (20%), Positives = 143/350 (40%), Gaps = 43/350 (12%)

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK------------------------- 326
           A D  + +  S    +    N ++   C+  +FDK                         
Sbjct: 79  AADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVD 138

Query: 327 ----------AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
                     A  L +  V   L P   T N +L      G  D  +++  +M+   F V
Sbjct: 139 ARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMD--DFGV 196

Query: 377 AADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALY 433
           A D+  F   + G  +   I  AL +++E++ +G    +  ++ L+G     G++  A+ 
Sbjct: 197 APDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMA 256

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
              +MR   L  + + +++ I     +G + +A    ++++    +P V  YN L  GLC
Sbjct: 257 YLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLC 316

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           K   +  A  L+ + +      P    +   I   C  G+ +K +++ + M  +   P+ 
Sbjct: 317 KERRLLDAEGLLNE-MRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDI 375

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           V  + +I GMC+ G L++A  ++ ++  R++    N + Y  ++  H +K
Sbjct: 376 VTYNTLIDGMCRQGDLDKANDLWDDMHSREIF--PNHVTYSILIDSHCEK 423


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 221/489 (45%), Gaps = 23/489 (4%)

Query: 133 TLASKFFHWAGKQKGYKH-NFASYNALAYCLSR---------NNLFRAADQVPELMDSQG 182
           +++S+FF     Q  +K+  F + +    C +R          ++F   D++   +   G
Sbjct: 13  SISSRFFGHFQPQNPHKNCRFRNVDDAVTCFNRMVRVFPPPPTSVF---DKLLGAIVRMG 69

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
                + +  +++     P +  +T +I     + +      +   + K   + +++ + 
Sbjct: 70  HYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFN 129

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           T+I G C  G + +  +  + +   G L D+  YG LI GL   G++  A  LL+++  S
Sbjct: 130 TIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKS 189

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
             + +L +Y+++I GLC+      A  L     +  +  D  T N L+  C  +GR    
Sbjct: 190 SVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEV 249

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
            +LL +M  ++ +V  D +  F  L+    KE RI+ A  V   +  +G    +  YN L
Sbjct: 250 TQLLTKM--VRENVDPD-DYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNAL 306

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           M        V +A  LF +M    LE + L++++ I  + ++  + EA     ++   + 
Sbjct: 307 MEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           VP++A+YN L  GLC  G I     L+ +  G+ A  P    Y + I  +C+ G   + +
Sbjct: 367 VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGS-AQPPDVVTYNILIDALCKEGRILEAL 425

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
            VL  M ++G  PN V  +A++ G C    +  A+ +F  + +  L  E + + Y+ ++ 
Sbjct: 426 GVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGL--EPDILNYNVLIN 483

Query: 599 EHMKKKTAD 607
            + K +  D
Sbjct: 484 GYCKTEMVD 492



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 130/518 (25%), Positives = 216/518 (41%), Gaps = 22/518 (4%)

Query: 91  FITDAFRKNQFQWGPQVVTELSKLRRVTP--DLVAEVLKVENNPTLASKFFHWAGKQKGY 148
            +   +  +QF +G  ++  LSK  ++     L+ E+ K    P L     + A      
Sbjct: 151 LLAQGYLFDQFTYG-TLINGLSKNGQIKAALHLLQEMEKSSVQPNLV---MYSALIDGLC 206

Query: 149 KHNFASYNALAYC--LSRNNLFRAADQVPELMD---SQGRIAEMLEILEKMRRNLCKPDV 203
           K  F S +AL  C  +    +   A     L+D   S GR  E+ ++L KM R    PD 
Sbjct: 207 KDGFVS-DALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDD 265

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           + +  +I  L  E  +     V   M K   + D++ Y  L+ G C    V    ELF  
Sbjct: 266 YTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNR 325

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M + G+  D   Y VLI+G      V +A  L K+L +      +  YNS+I GLC   +
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
                KL +        PD  T N L+    + GR+     +L  M  +K  V  ++  +
Sbjct: 386 ISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMM--MKKGVKPNIVTY 443

Query: 384 FEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
              + G      + +A D+F  +   G    +  YN+L+    +   V +A+ LF +MR 
Sbjct: 444 NAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRH 503

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
            NL  +  S++  I      G I    E  +++ +  Q P V  YN L    CK    D 
Sbjct: 504 KNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDK 563

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A+ L R  +  +   P  +     + ++C+  + +   + L  +   GC PN    + +I
Sbjct: 564 AISLFRQIVEGI--WPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILI 621

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           + +CK G+  EA  + + + +     +A T    EI+I
Sbjct: 622 NALCKDGSFGEAMLLLSKMEDNDRPPDAITF---EIII 656



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 119/498 (23%), Positives = 212/498 (42%), Gaps = 73/498 (14%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELM------------------DSQGRI 184
           + GY+ N  ++N +   +C++   +F+A D    L+                     G+I
Sbjct: 118 KSGYQPNLVTFNTIINGFCIN-GMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQI 176

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLA---------------AERNL---------- 219
              L +L++M ++  +P++  Y+A+I  L                 ER +          
Sbjct: 177 KAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSL 236

Query: 220 -DACLRV--WEE-------MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
            D C  V  W+E       M ++ V+ D   +  LI  LCK GR++    +   M + G 
Sbjct: 237 IDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGE 296

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
             D   Y  L+EG      V +A +L   +V  G   D+  YN +I G C+ K  D+A  
Sbjct: 297 KPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMV 356

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-------EKLKFSVAADLEK 382
           LF+     +L P  ++ N L+      GR+ +  KLL +M       + + +++  D   
Sbjct: 357 LFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILID--- 413

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
                + KE RI+ AL V   +  KG   ++  YN +M        V  A  +F +M   
Sbjct: 414 ----ALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS 469

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            LE + L++++ I  + ++  + EA     ++   + +P +A+YN L  GLC +G I   
Sbjct: 470 GLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHV 529

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
             L+ D + +    P    Y + +   C++   +K I +  ++  EG  P+     AI+ 
Sbjct: 530 QELL-DEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIV-EGIWPDFYTNHAIVD 587

Query: 562 GMCKHGTLEEARKVFTNL 579
            +CK   L+ A     +L
Sbjct: 588 NLCKGEKLKMAEDALKHL 605



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 104/261 (39%), Gaps = 54/261 (20%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           +KG K N  +YNA+   YCL RNN+  A D                 I  +M ++  +PD
Sbjct: 433 KKGVKPNIVTYNAMMDGYCL-RNNVNVAKD-----------------IFNRMVKSGLEPD 474

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           +  Y  +I        +D  + +++EM+   +  D+ +Y +LI GLC  GR+    EL  
Sbjct: 475 ILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLD 534

Query: 263 EMKENGILIDRAIYGVLIEGL---------------VGEG-------------------K 288
           EM ++G   D   Y +L++                 + EG                   K
Sbjct: 535 EMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEK 594

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           +  A D LK L+  G   ++  Y  +I  LC+   F +A  L      +D  PD  T   
Sbjct: 595 LKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEI 654

Query: 349 LLVCCAEMGRMDNFFKLLAQM 369
           ++    +    D   KL  +M
Sbjct: 655 IIGVLLQRNETDKAEKLREEM 675



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 99/235 (42%), Gaps = 21/235 (8%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYC------------- 161
           VT + + +   + NN  +A   F+   K  G + +  +YN L   YC             
Sbjct: 441 VTYNAMMDGYCLRNNVNVAKDIFNRMVKS-GLEPDILNYNVLINGYCKTEMVDEAIVLFK 499

Query: 162 -LSRNNLFRAADQVPELMD---SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER 217
            +   NL         L+D   + GRI  + E+L++M  +   PDV  Y  ++      +
Sbjct: 500 EMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQ 559

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
             D  + ++ ++ +  +  D      ++  LCKG ++    +  + +  +G   +   Y 
Sbjct: 560 PFDKAISLFRQIVEG-IWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYT 618

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
           +LI  L  +G  G+A  LL  + D+    D   +  IIG L +  + DKA KL E
Sbjct: 619 ILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLRE 673


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 178/395 (45%), Gaps = 6/395 (1%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           + +++ M     KP +  Y ++++ L      D    V++EM    V  DV ++  LI G
Sbjct: 211 MALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGG 270

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            C+ G +    ++++EM+  GI  D   +  LI      GK+  A   L+++   G   D
Sbjct: 271 FCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPD 330

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
             IY  +IGG CR      A ++ +  V     PD  T N LL    +  R+ +   LL 
Sbjct: 331 GVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLN 390

Query: 368 QMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEE-LKGKGYSSVPIYNILMGALLE 424
           +M +    V  DL  F   + G   E ++  AL +F+  L  +    +  YN L+  +  
Sbjct: 391 EMRER--GVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 448

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G++ KA  L+  M    +  N +++SI I  H E G + +A    +++I    +P++  
Sbjct: 449 QGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMT 508

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN + KG C+ G +      ++  + N  S P    Y   I    +  +     ++LN M
Sbjct: 509 YNSIIKGYCRSGNVSKGQKFLQKMMVNKVS-PDLITYNTLIHGYIKEDKMHDAFKLLNMM 567

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            +E   P+ V  + +I+G   HG ++EA  +F  +
Sbjct: 568 EKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKM 602



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 176/402 (43%), Gaps = 11/402 (2%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           + +    M+         D    V  EM+K  V  DV+ +  ++    + G       L 
Sbjct: 155 NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 214

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             M   G+      Y  +++GL   G   KA ++ K++ D G   D+  +  +IGG CRV
Sbjct: 215 DSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRV 274

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            + ++A K+++      + PD  + + L+   A  G+MD+    L +M    F +  D  
Sbjct: 275 GEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMR--CFGLVPD-G 331

Query: 382 KFFEFLVGKEERIMM---ALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGK 437
             +  ++G   R  +   AL V +E+ G G    V  YN L+  L +   +  A  L  +
Sbjct: 332 VIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNE 391

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           MR   +  +  +F+  I  +   G + +A +  + ++     P +  YN L  G+C+ G+
Sbjct: 392 MRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 451

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           +D A  L  D + +    P    Y++ I   C  G+ E     L+EM  +G  PN +  +
Sbjct: 452 LDKANDLWDD-MHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYN 510

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIVYDEI 596
           +II G C+ G + + +K    +   K+   L   NT+++  I
Sbjct: 511 SIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYI 552



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 111/486 (22%), Positives = 203/486 (41%), Gaps = 42/486 (8%)

Query: 100 QFQWGPQVVTELSKLRRVTPDLVAEVLKVEN----NPTLASKFFHWAGKQKGYKHNFASY 155
           +F     V++E+ K R V PD+V   + V+         A+     +   KG K    +Y
Sbjct: 171 EFDKVDAVISEMEK-RCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTY 229

Query: 156 NALAYCLSRNNLFRAADQVPELMDS-------------------QGRIAEMLEILEKMRR 196
           N++   L R+ ++  A +V + MD                     G I E L+I ++MR 
Sbjct: 230 NSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRH 289

Query: 197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
              KPD+ +++ +I + A    +D  +    EM+   +  D + Y  +I G C+ G +  
Sbjct: 290 RGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSD 349

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
              +  EM   G L D   Y  L+ GL  E ++  A  LL ++ + G   DL  + ++I 
Sbjct: 350 ALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIH 409

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK----- 371
           G C   + DKA +LF+  +   L PD  T N L+      G +D    L   M       
Sbjct: 410 GYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFP 469

Query: 372 --LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEV 428
             + +S+  D          ++ ++  A    +E+  KG   ++  YN ++      G V
Sbjct: 470 NHVTYSILIDSH-------CEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNV 522

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
            K      KM    +  + ++++  I  +++   + +A +  N + +    P V  YN L
Sbjct: 523 SKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNML 582

Query: 489 TKGLCKIGEI-DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
             G    G + +A  +  + C   +   P  + Y   I     +G +++  ++ +EM Q 
Sbjct: 583 INGFSVHGNVQEAGWIFEKMCAKGIE--PDRYTYMSMINGHVTAGNSKEAFQLHDEMLQR 640

Query: 548 GCPPNE 553
           G  P++
Sbjct: 641 GFAPDD 646



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/351 (20%), Positives = 145/351 (41%), Gaps = 45/351 (12%)

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK------------------------- 326
           A D  + +  S    +    N ++   C+  +FDK                         
Sbjct: 140 AADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVD 199

Query: 327 ----------AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
                     A  L +  V   L P   T N +L      G  D  +++  +M+   F V
Sbjct: 200 ARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMD--DFGV 257

Query: 377 AADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALY 433
           A D+  F   + G  +   I  AL +++E++ +G    +  ++ L+G     G++  A+ 
Sbjct: 258 APDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMA 317

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
              +MR   L  + + +++ I     +G + +A    ++++    +P V  YN L  GLC
Sbjct: 318 YLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLC 377

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH-VCRSGEAEKIIEVLNEMTQEGCPPN 552
           K   +  A  L+ +        P +     T++H  C  G+ +K +++ + M  +   P+
Sbjct: 378 KERRLLDAEGLLNEM--RERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 435

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
            V  + +I GMC+ G L++A  ++ ++  R++    N + Y  ++  H +K
Sbjct: 436 IVTYNTLIDGMCRQGDLDKANDLWDDMHSREIF--PNHVTYSILIDSHCEK 484


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 125/504 (24%), Positives = 226/504 (44%), Gaps = 42/504 (8%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEMLEIL 191
           N  +YNAL   L +N  F  AD++ + M  +G                    I + L + 
Sbjct: 337 NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLF 396

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           +KMR    K  V+ Y ++I     + +LD    +   M K+ +     +Y  LI GLC+ 
Sbjct: 397 DKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRN 456

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           G +    EL REM E GI  +   +  LI G   + K+ +A  L   ++DS    +   +
Sbjct: 457 GDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTF 516

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N +I G C V    KA++L++  V+  L PD  T   L+        +    + +A +E 
Sbjct: 517 NVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLEN 576

Query: 372 L-----KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
                  FS+ A L  FF     +E R      +++E+  +G    +  + I++ A L+ 
Sbjct: 577 SYAVLNNFSLTALLYGFF-----REGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQ 631

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
            + +K+  LF +M+   ++ + + ++  I    +  ++++A  C ++++     P+   +
Sbjct: 632 HDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTH 691

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
             L   LCK G + +A +L ++ L GNV   P +F Y   + +    G+ EK  ++ + M
Sbjct: 692 TVLINNLCKSGYLGSAELLCKEMLAGNVL--PNKFTYNCFLDYFATEGDMEKAKDLHSAM 749

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
            Q G   + V  + +I G+CK G ++EA  + + + E       + I Y  I+ E  K  
Sbjct: 750 LQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGF--SPDCISYSTIIHELCKMG 806

Query: 605 TADLVLSGLKFFGLESKLKAKGCK 628
             +      K F L +++  KG K
Sbjct: 807 DIN------KAFELWNEMLYKGLK 824



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/479 (23%), Positives = 203/479 (42%), Gaps = 68/479 (14%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           + KG K     YN+L   YC                   QG +     +L  M +    P
Sbjct: 400 RDKGIKVTVYPYNSLINGYC------------------KQGSLDRARGLLSGMVKEGLTP 441

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
              +Y+ +I  L    +L +C+ +  EM +  +  +   +  LI G CK  ++     LF
Sbjct: 442 TAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLF 501

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            +M ++ ++ +   + V+IEG    G + KA  L   +V+ G + D   Y S+I GLC  
Sbjct: 502 DKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLT 561

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVN-----PLLVCCAEMGRMDNFFKLLAQM------- 369
               KA +        DL   ++ +N      LL      GR    + L  +M       
Sbjct: 562 SGVSKANEFVA-----DLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKL 616

Query: 370 EKLKFSVAA-------DLEK------------------FFEFLV---GKEERIMMALDVF 401
           + + F++         D EK                  F+  ++    KEE ++ AL+ +
Sbjct: 617 DLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCW 676

Query: 402 EELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
           +++   GYS +   + +L+  L + G +  A  L  +M   N+  N  +++  +      
Sbjct: 677 DQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATE 736

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
           GD+ +A + H+ +++   + S+ ++N L KGLCK G+I  A+ L+   +      P    
Sbjct: 737 GDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMSK-ITESGFSPDCIS 794

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           Y+  I  +C+ G+  K  E+ NEM  +G  P+ V  +  I     HG  ++A  ++TN+
Sbjct: 795 YSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNM 853



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 155/345 (44%), Gaps = 6/345 (1%)

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           ++  L K  +     +LF +M ++G+ +D  +Y   I        +  A  L+  +   G
Sbjct: 169 ILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEG 228

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            +A    YN ++ GLC+  +  +A ++  V V   +  D  T   L+     M  ++   
Sbjct: 229 VKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMAL 288

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGAL 422
           ++   M +L F  +     F    + K+E +  A  +  +L   G   +V  YN L+  L
Sbjct: 289 RITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKL 348

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            +      A  LF +M G  LE N ++++I I    + G I +A    +K+ +     +V
Sbjct: 349 CKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTV 408

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEV 540
             YN L  G CK G +D A  L+    G V  G  PT   Y+  I  +CR+G+    +E+
Sbjct: 409 YPYNSLINGYCKQGSLDRARGLLS---GMVKEGLTPTAASYSPLIAGLCRNGDLSSCMEL 465

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
             EM + G   N    +A+I+G CK   ++EA ++F  + +  ++
Sbjct: 466 HREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVI 510



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 101/460 (21%), Positives = 189/460 (41%), Gaps = 43/460 (9%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++ +KM ++    D + YTA IR     RNLD    +   M+ + V+A  + Y  L+ GL
Sbjct: 184 DLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGL 243

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY---- 304
           CK  RV    E+   M   G+  D   Y  L+ G     ++  A  +  D++  G+    
Sbjct: 244 CKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSE 303

Query: 305 -------------------------RADLGI------YNSIIGGLCRVKQFDKAYKLFEV 333
                                      DLG+      YN++I  LC+ ++FD A +LF+ 
Sbjct: 304 ANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKE 363

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KE 391
                L P+  T   L+    + G +++   L  +M      V   +  +   + G  K+
Sbjct: 364 MAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVT--VYPYNSLINGYCKQ 421

Query: 392 ERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
             +  A  +   +  +G + +   Y+ L+  L   G++   + L  +M    +  N+ +F
Sbjct: 422 GSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTF 481

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +  I    +   + EA    +K+I+ + +P+   +N + +G C +G I  A  L  D + 
Sbjct: 482 TALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLY-DQMV 540

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
            +   P  + Y   I  +C +    K  E + ++       N    +A++ G  + G   
Sbjct: 541 EMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFT 600

Query: 571 EARKVFTNLRER--KLLTEANTIVYDEILIEHMKKKTADL 608
           E   ++  +  R  KL   + TI+    L +H K+K+  L
Sbjct: 601 ETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVL 640



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 40/264 (15%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +  +M+    KPD   YT MI  L+ E N+   L  W++M  D    + + +  LI  LC
Sbjct: 640 LFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLC 699

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYG-------------------------------- 277
           K G +     L +EM    +L ++  Y                                 
Sbjct: 700 KSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVS 759

Query: 278 --VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
             +LI+GL   GK+ +A DL+  + +SG+  D   Y++II  LC++   +KA++L+   +
Sbjct: 760 FNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEML 819

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM 395
              L PD    N  +  C   G  D    +   M  ++  V  + + +   L G    +M
Sbjct: 820 YKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNM--IRSGVQPNWDTYRALLSGIS--LM 875

Query: 396 MALDVFEELKG-KGYSSVPIYNIL 418
           +  D F   +G K Y  + +Y ++
Sbjct: 876 LHYD-FSCFRGTKQYIQISVYELM 898



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 125/290 (43%), Gaps = 2/290 (0%)

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           + SG   +    + I+  L +++QF  A  LF+  +Q  +  D       +    E   +
Sbjct: 155 LSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNL 214

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNIL 418
           D    L+ +ME      +A       + + K  R+  A++V   +   G ++  + Y  L
Sbjct: 215 DGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTL 274

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +     + E++ AL +   M  L    +  + S  I    +   + EA     K+ ++  
Sbjct: 275 VYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM 334

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           VP+V AYN L   LCK    D A  L ++  G     P E  YA+ I  +C+ G  E  +
Sbjct: 335 VPNVFAYNALIDKLCKNERFDDADRLFKEMAGR-GLEPNEVTYAILIHALCKRGMIEDAL 393

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
            + ++M  +G        +++I+G CK G+L+ AR + + + +  L   A
Sbjct: 394 CLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTA 443



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 106/226 (46%), Gaps = 9/226 (3%)

Query: 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
            L V  E +G   S+VP YN+LM  L +   V++A+ +   M  + +  + +++   +  
Sbjct: 219 GLVVRMESEGVKASAVP-YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYG 277

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASG 515
                ++  A    + +I +  VPS A  + +   L K   ++ A  L   C LG++   
Sbjct: 278 FCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLA--CKLGDLGMV 335

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P  F Y   I  +C++   +    +  EM   G  PNEV  + +I  +CK G +E+A  +
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 576 FTNLRERKLLTEANTIVYDEILIEHMKKKTADL---VLSGLKFFGL 618
           F  +R++ +  +     Y+ ++  + K+ + D    +LSG+   GL
Sbjct: 396 FDKMRDKGI--KVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGL 439


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/473 (23%), Positives = 212/473 (44%), Gaps = 24/473 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG------------------RIA 185
           K+ G   N  +YN L Y L ++   R A  V + M + G                  R A
Sbjct: 163 KEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDA 222

Query: 186 E-MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           E ++ +L +M     +P+V++YT  IRVL     L+   R+  +M+++  + DV+    L
Sbjct: 223 ETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVL 282

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC  GR+    ++F +MK +    DR  Y  L++     G      ++   L   GY
Sbjct: 283 IQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGY 342

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  Y + +  LC+V + D+A  +F+   Q  + P   + N L+    +  R +   +
Sbjct: 343 NDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALE 402

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
           L   M     +        F    GK    + AL  +E +K KG    V   N ++  L 
Sbjct: 403 LFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLA 462

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G +  A  +F +++ + +  +++++++ I+C  ++ +  EA +   ++IE    P V 
Sbjct: 463 KTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVL 522

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           A N L   L K G  + A  +  + L  +   PT+  Y   +  + R G+ ++++++L  
Sbjct: 523 AMNSLIDMLYKAGRGNEAWKIFYE-LKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEG 581

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIVY 593
           M     PPN +  + ++  +CK+G +  A  +  ++        L+  NT++Y
Sbjct: 582 MNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMY 634



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 197/453 (43%), Gaps = 26/453 (5%)

Query: 147 GYKHN-FASYNALA----YCLSRNNLFRAADQVPEL---------MDSQGRIAEMLEILE 192
           GY H  F +Y+  +      L R  L ++   VP++         +   GR+     +  
Sbjct: 416 GYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFH 475

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
           +++     PD   YT MI+  +   N D  ++++ EM ++    DV+A  +LI  L K G
Sbjct: 476 ELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAG 535

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
           R     ++F E+KE  +      Y  L+ GL  EGKV +   LL+ +  + +  ++  YN
Sbjct: 536 RGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYN 595

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
           +++  LC+  + + A  +      +   PD S+ N ++    + GR+D  F +  QM+K+
Sbjct: 596 TVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQMKKV 655

Query: 373 ----KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNI--LMGALLEIG 426
                 +V   L  F    + KE     AL    E   +  S V   ++  LM  +L+  
Sbjct: 656 LAPDYATVCTILPSFVRSGLMKE-----ALHTVREYILQPDSKVDRSSVHSLMEGILKRD 710

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
             +K++     +    L ++ L  S  I+   +  + L A E   K   +       +YN
Sbjct: 711 GTEKSIEFAENIASSGLLLDDLFLSPIIRHFCKHKEALAAHELVKKFENLGVSLKTGSYN 770

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L  GL     ID A  L  + +  +   P EF Y L +  + +S   E ++++  EM  
Sbjct: 771 ALICGLVDEDLIDIAEELFSE-MKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHN 829

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           +G     V  + IISG+ K   L+EA  ++  L
Sbjct: 830 KGYKSTYVTYNTIISGLVKSKMLDEAINLYYQL 862



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 191/462 (41%), Gaps = 47/462 (10%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           ELM + GR+ ++ ++ + M+R + K +V  +  +   +  E  L +       MK+  + 
Sbjct: 109 ELMRAHGRVGDVAQVFDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIV 168

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            +   Y  LI  L K G      ++++ M  +G++     Y VL+              L
Sbjct: 169 LNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGL 228

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
           L ++   G R ++  Y   I  L +  + ++AY++     ++   PD  T   L+    +
Sbjct: 229 LGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCD 288

Query: 356 MGRM----DNFFKLLAQMEKL----------KFSVAADLEKFFEFL-------------- 387
            GR+    D F+K+ A  +K           K   + D     E                
Sbjct: 289 AGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVS 348

Query: 388 -------VGKEERIMMALDVFEELKGKG-----YSSVPIYNILMGALLEIGEVKKALYLF 435
                  + +  R+  ALDVF+E+K KG     YS    YN L+   L+     +AL LF
Sbjct: 349 YTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYS----YNSLISGFLKADRFNRALELF 404

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             M       N  +  + I  H +SG+ L+A + +  +     VP V A N +  GL K 
Sbjct: 405 NHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKT 464

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G +  A  +  + L  +   P    Y + I    ++  A++ +++  EM +  C P+ + 
Sbjct: 465 GRLGMAKRVFHE-LKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLA 523

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            +++I  + K G   EA K+F  L+E  L  E     Y+ +L
Sbjct: 524 MNSLIDMLYKAGRGNEAWKIFYELKEMNL--EPTDCTYNTLL 563



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 104/466 (22%), Positives = 190/466 (40%), Gaps = 55/466 (11%)

Query: 151  NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
            N  +YN +  CL +N                G +   L++L  M  N C PD+ +Y  ++
Sbjct: 590  NIITYNTVLDCLCKN----------------GEVNYALDMLYSMTMNGCMPDLSSYNTVM 633

Query: 211  RVLAAERNLDACLRVWEEMKKDLV-----------------------------------E 235
              L  E  LD    ++ +MKK L                                    +
Sbjct: 634  YGLVKEGRLDEAFWMFCQMKKVLAPDYATVCTILPSFVRSGLMKEALHTVREYILQPDSK 693

Query: 236  ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
             D  +  +L+ G+ K     +  E    +  +G+L+D      +I       +   A +L
Sbjct: 694  VDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHFCKHKEALAAHEL 753

Query: 296  LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
            +K   + G     G YN++I GL      D A +LF    +    PD  T + +L    +
Sbjct: 754  VKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGK 813

Query: 356  MGRMDNFFKLLAQMEKLKF-SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP- 413
              R+++  K+  +M    + S           LV K + +  A++++ +L  +G+S  P 
Sbjct: 814  SMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLV-KSKMLDEAINLYYQLMSEGFSPTPC 872

Query: 414  IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
             Y  L+  LL+ G ++ A  LF +M     E N   ++I +  +  +GD  + CE    +
Sbjct: 873  TYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESM 932

Query: 474  IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            +E    P + +Y  +   LC  G ++  +   +  L ++   P    Y L I  + +SG 
Sbjct: 933  VEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQ-LTDMGLEPDLITYNLLIHGLGKSGR 991

Query: 534  AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             E+ + + N+M ++G  PN    +++I  + K G   EA K++  L
Sbjct: 992  LEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEEL 1037



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 134/308 (43%), Gaps = 24/308 (7%)

Query: 153  ASYNALAYCLSRNNLFRAADQV----------PE------LMDSQG---RIAEMLEILEK 193
             SYNAL   L   +L   A+++          P+      ++D+ G   RI +ML+I E+
Sbjct: 767  GSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEE 826

Query: 194  MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
            M     K     Y  +I  L   + LD  + ++ ++  +        Y  L+ GL K G 
Sbjct: 827  MHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGN 886

Query: 254  VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
            +     LF EM E G   + AIY +L+ G    G   K C+L + +V+ G   D+  Y  
Sbjct: 887  IEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTV 946

Query: 314  IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
            +I  LC   + +     F+      L PD  T N L+    + GR++    L   MEK  
Sbjct: 947  VIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKK- 1005

Query: 374  FSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKK 430
              +A +L  +   +  +GK  +   A  ++EEL  KG+  +V  YN L+      G  + 
Sbjct: 1006 -GIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPEN 1064

Query: 431  ALYLFGKM 438
            A   +G+M
Sbjct: 1065 AFAAYGRM 1072



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 148/345 (42%), Gaps = 45/345 (13%)

Query: 240  AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK-- 297
            +Y  LI GL     +    ELF EMK  G   D   Y ++++ +   GK  +  D+LK  
Sbjct: 768  SYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAM---GKSMRIEDMLKIQ 824

Query: 298  -DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             ++ + GY++    YN+II GL + K  D+A  L+   + +  +P   T  PLL    + 
Sbjct: 825  EEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKD 884

Query: 357  GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN 416
            G ++                  D E  F+                E L+     +  IYN
Sbjct: 885  GNIE------------------DAEALFD----------------EMLECGCEPNCAIYN 910

Query: 417  ILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
            IL+      G+ +K   LF  M  +G+N ++ S  +++ I      G + +      ++ 
Sbjct: 911  ILLNGYRIAGDTEKVCELFESMVEQGMNPDIKS--YTVVIDTLCADGRLNDGLSYFKQLT 968

Query: 475  EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
            +M   P +  YN L  GL K G ++ A+ L  D +      P  + Y   IL++ ++G+A
Sbjct: 969  DMGLEPDLITYNLLIHGLGKSGRLEEALSLYND-MEKKGIAPNLYTYNSLILYLGKAGKA 1027

Query: 535  EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             +  ++  E+  +G  PN    +A+I G    G+ E A   +  +
Sbjct: 1028 AEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRM 1072



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 81/164 (49%)

Query: 182  GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
            G   ++ E+ E M      PD+ +YT +I  L A+  L+  L  ++++    +E D++ Y
Sbjct: 920  GDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITY 979

Query: 242  VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
              LI GL K GR+     L+ +M++ GI  +   Y  LI  L   GK  +A  + ++L+ 
Sbjct: 980  NLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLA 1039

Query: 302  SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
             G++ ++  YN++I G       + A+  +   +     P+ ST
Sbjct: 1040 KGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSST 1083



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 57/132 (43%)

Query: 180  SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
            + GR+ + L   +++     +PD+  Y  +I  L     L+  L ++ +M+K  +  ++ 
Sbjct: 953  ADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLY 1012

Query: 240  AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
             Y +LI+ L K G+     +++ E+   G   +   Y  LI G    G    A      +
Sbjct: 1013 TYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRM 1072

Query: 300  VDSGYRADLGIY 311
            +  G R +   Y
Sbjct: 1073 IVGGCRPNSSTY 1084


>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
 gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
          Length = 901

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 195/474 (41%), Gaps = 100/474 (21%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL-- 248
            E MR    +P+ F +T+++   A  R++   L   EEMK + +E  ++ Y  LI G   
Sbjct: 287 FENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAK 346

Query: 249 ---------------------------------CKGGRVVRGHELFREMKENGI------ 269
                                            C+ G + R  EL REM+E+GI      
Sbjct: 347 INDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDV 406

Query: 270 -------------------LIDR----------AIYGVLIEGLVGEGKVGKACDLLKDLV 300
                              + +R            YG L+   V  GKV KA  + K++ 
Sbjct: 407 YHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEME 466

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + +   Y+ +I G   +  F  A+ +FE  ++  L PD +  N L+    +MG MD
Sbjct: 467 SCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMD 526

Query: 361 NFFKLLAQMEKLK--------------FSVAADLEKFFEFLVGKEERIMMALDVFEELKG 406
               +L +M+K +              ++VA D++               ALD  + ++ 
Sbjct: 527 RAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKS--------------ALDTLDLMRR 572

Query: 407 KG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G   +V  YN L+  L+   +V++A+ +  KM    +  N  +++I ++ +  SGDI +
Sbjct: 573 SGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGK 632

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A E   KI E      V  Y  L +  CK G + +A+ + R+         T F Y + I
Sbjct: 633 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT-FIYNILI 691

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
               R G+  +  +++ +M ++G PPN    ++ I+  CK G ++ A KV   +
Sbjct: 692 DGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEM 745



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 16/217 (7%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           +YNAL + L R +                ++   + +L+KM      P+   YT ++R  
Sbjct: 581 TYNALIHGLVRKH----------------KVQRAVSVLDKMSIAGITPNEHTYTIIMRGY 624

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
           AA  ++      + ++K+  ++ DV  Y TL+   CK GR+     + REM    I  + 
Sbjct: 625 AASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT 684

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
            IY +LI+G    G V +A DL+K + + G   ++  Y S I   C+     +A K+ E 
Sbjct: 685 FIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEE 744

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
            V   L P+  T   L+   A +   D   K   +M+
Sbjct: 745 MVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMK 781



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 109/251 (43%), Gaps = 7/251 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +   L+ L+ MRR+ C P V  Y A+I  L  +  +   + V ++M    +  +   Y
Sbjct: 558 GDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTY 617

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++ G    G + +  E F ++KE+G+ +D  IY  L+      G++  A  + +++  
Sbjct: 618 TIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSF 677

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                +  IYN +I G  R     +A  L +   +D + P+  T    +  C + G M  
Sbjct: 678 QKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQR 737

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM---ALDVFEELKGKGYS-SVPIYNI 417
             K++ +M  +         K +  L+    R+ +   AL  FEE+K  G       Y+ 
Sbjct: 738 AEKVIEEMVDVGLKPNV---KTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHC 794

Query: 418 LMGALLEIGEV 428
           L+ +LL    V
Sbjct: 795 LVTSLLSRATV 805



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 52/109 (47%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + E  +++++M+ +   P++  YT+ I       ++    +V EEM    ++ +V  
Sbjct: 697 RGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKT 756

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
           Y TLI G  +     R  + F EMK  G+  D A Y  L+  L+    V
Sbjct: 757 YTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATV 805


>gi|224061569|ref|XP_002300545.1| predicted protein [Populus trichocarpa]
 gi|222847803|gb|EEE85350.1| predicted protein [Populus trichocarpa]
          Length = 567

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 207/465 (44%), Gaps = 60/465 (12%)

Query: 134 LASKFFHWAG-KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
           L   FFH     +KG+K + A    L Y L ++N  + A +V E+    G I        
Sbjct: 78  LNDAFFHLEFIVRKGHKPDVAQATQLLYDLCKSNKMKKATRVMEMTIESGII-------- 129

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
                   PD  +YT ++  L    N+   +++ E+M+++    + + Y +L+ GLCK G
Sbjct: 130 --------PDAASYTFLVNNLCKRGNIGYAMQLVEKMEENGCPTNTVTYNSLVRGLCKHG 181

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
            + +  +L  ++   G++ +   +  L+E    E  V +A  LL  ++  G + +L  YN
Sbjct: 182 NLNQSLQLLDKLMRKGLVPNEFTHSFLLEAAYKERGVDEAMKLLDGIIAKGGKPNLVSYN 241

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQME 370
            ++ GLC+  + ++A + F         P+  + N +L  +CC   GR +   +L+A+M+
Sbjct: 242 VLLTGLCKEGRTEEAIQFFRDLPSKGFNPNVVSCNIILRSLCCE--GRWEEANELVAEMD 299

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKK 430
                               EER                 S+  YNIL+G+L   G ++ 
Sbjct: 300 S-------------------EER---------------SPSLVTYNILIGSLASHGRIQH 325

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A  +  +M   + + ++ +F+  I    + G      +C +++I     P+   +N +  
Sbjct: 326 AFQVLDEMMRASFQPSAATFNPIISHLCKEGKADLVVKCLDQMIHHCCNPNDGTFNAIAV 385

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
            LC+ G +  A  +++  LGN  +  T   Y   I  +CR G      ++L EM Q G  
Sbjct: 386 -LCEGGRVQRAFSIIQS-LGNKQNSSTHDFYRGVISSLCRKGNTYPAFQLLYEMIQSGFV 443

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRE---RKLLTEANTIV 592
           P+    S++I G+C  G L+EA ++F  L E   R +L   N ++
Sbjct: 444 PDPYTYSSLIRGLCVEGMLDEALEIFRLLEENDYRPILGNFNALI 488



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 7/137 (5%)

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCR 530
           I+     P VA    L   LCK  ++  A  ++      + SG  P    Y   + ++C+
Sbjct: 88  IVRKGHKPDVAQATQLLYDLCKSNKMKKATRVME---MTIESGIIPDAASYTFLVNNLCK 144

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            G     ++++ +M + GCP N V  ++++ G+CKHG L ++ ++   L  + L+   N 
Sbjct: 145 RGNIGYAMQLVEKMEENGCPTNTVTYNSLVRGLCKHGNLNQSLQLLDKLMRKGLV--PNE 202

Query: 591 IVYDEILIEHMKKKTAD 607
             +  +L    K++  D
Sbjct: 203 FTHSFLLEAAYKERGVD 219


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/473 (23%), Positives = 212/473 (44%), Gaps = 24/473 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG------------------RIA 185
           K+ G   N  +YN L Y L ++   R A  V + M + G                  R A
Sbjct: 163 KEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDA 222

Query: 186 E-MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           E ++ +L +M     +P+V++YT  IRVL     L+   R+  +M+++  + DV+    L
Sbjct: 223 ETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVL 282

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC  GR+    ++F +MK +    DR  Y  L++     G      ++   L   GY
Sbjct: 283 IQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGY 342

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  Y + +  LC+V + D+A  +F+   Q  + P   + N L+    +  R +   +
Sbjct: 343 NDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALE 402

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
           L   M     +        F    GK    + AL  +E +K KG    V   N ++  L 
Sbjct: 403 LFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLA 462

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G +  A  +F +++ + +  +++++++ I+C  ++ +  EA +   ++IE    P V 
Sbjct: 463 KTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVL 522

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           A N L   L K G  + A  +  + L  +   PT+  Y   +  + R G+ ++++++L  
Sbjct: 523 AMNSLIDMLYKAGRGNEAWKIFYE-LKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEG 581

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIVY 593
           M     PPN +  + ++  +CK+G +  A  +  ++        L+  NT++Y
Sbjct: 582 MNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMY 634



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 111/453 (24%), Positives = 196/453 (43%), Gaps = 26/453 (5%)

Query: 147 GYKHN-FASYNALA----YCLSRNNLFRAADQVPEL---------MDSQGRIAEMLEILE 192
           GY H  F +Y+  +      L R  L ++   VP++         +   GR+     +  
Sbjct: 416 GYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFH 475

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
           +++     PD   YT MI+  +   N D  ++++ EM ++    DV+A  +LI  L K G
Sbjct: 476 ELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAG 535

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
           R     ++F E+KE  +      Y  L+ GL  EGKV +   LL+ +  + +  ++  YN
Sbjct: 536 RGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYN 595

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
           +++  LC+  + + A  +      +   PD S+ N ++    +  R+D  F +  QM+K+
Sbjct: 596 TVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMFCQMKKV 655

Query: 373 ----KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNI--LMGALLEIG 426
                 +V   L  F    + KE     AL    E   +  S V   ++  LM  +L+  
Sbjct: 656 LAPDYATVCTILPSFVRSGLMKE-----ALHTVREYILQPDSKVDRSSVHSLMEGILKRD 710

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
             +K++     +    L ++ L  S  I+   +  + L A E   K   +       +YN
Sbjct: 711 GTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKKFENLGVSLKTGSYN 770

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L  GL     ID A  L  + +  +   P EF Y L +  + +S   E ++++  EM  
Sbjct: 771 ALICGLVDEDLIDIAEELFSE-MKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHN 829

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           +G     V  + IISG+ K   L+EA  ++  L
Sbjct: 830 KGYKSTYVTYNTIISGLVKSKMLDEAINLYYQL 862



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 105/466 (22%), Positives = 191/466 (40%), Gaps = 55/466 (11%)

Query: 151  NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
            N  +YN +  CL +N                G +   L++L  M  N C PD+ +Y  ++
Sbjct: 590  NIITYNTVLDCLCKN----------------GEVNYALDMLYSMTMNGCMPDLSSYNTVM 633

Query: 211  RVLAAERNLDACLRVWEEMKKDLV-----------------------------------E 235
              L  E  LD    ++ +MKK L                                    +
Sbjct: 634  YGLVKEDRLDEAFWMFCQMKKVLAPDYATVCTILPSFVRSGLMKEALHTVREYILQPDSK 693

Query: 236  ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
             D  +  +L+ G+ K     +  E    +  +G+L+D      +I  L    +   A +L
Sbjct: 694  VDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEALAAHEL 753

Query: 296  LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
            +K   + G     G YN++I GL      D A +LF    +    PD  T + +L    +
Sbjct: 754  VKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGK 813

Query: 356  MGRMDNFFKLLAQMEKLKF-SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP- 413
              R+++  K+  +M    + S           LV K + +  A++++ +L  +G+S  P 
Sbjct: 814  SMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLV-KSKMLDEAINLYYQLMSEGFSPTPC 872

Query: 414  IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
             Y  L+  LL+ G ++ A  LF +M     E N   ++I +  +  +GD  + CE    +
Sbjct: 873  TYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESM 932

Query: 474  IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            +E    P + +Y  +   LC  G ++  +   +  L ++   P    Y L I  + +SG 
Sbjct: 933  VEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQ-LTDMGLEPDLITYNLLIHGLGKSGR 991

Query: 534  AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             E+ + + N+M ++G  PN    +++I  + K G   EA K++  L
Sbjct: 992  LEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEEL 1037



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 191/462 (41%), Gaps = 47/462 (10%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           ELM + GR+ ++ ++ + M+R + K +V  +  +   +  E  L +       MK+  + 
Sbjct: 109 ELMRAHGRVGDVAQVFDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIV 168

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            +   Y  LI  L K G      ++++ M  +G++     Y VL+              L
Sbjct: 169 LNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGL 228

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
           L ++   G R ++  Y   I  L +  + ++AY++     ++   PD  T   L+    +
Sbjct: 229 LGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCD 288

Query: 356 MGRM----DNFFKLLAQMEKL----------KFSVAADLEKFFEFL-------------- 387
            GR+    D F+K+ A  +K           K   + D     E                
Sbjct: 289 AGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVS 348

Query: 388 -------VGKEERIMMALDVFEELKGKG-----YSSVPIYNILMGALLEIGEVKKALYLF 435
                  + +  R+  ALDVF+E+K KG     YS    YN L+   L+     +AL LF
Sbjct: 349 YTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYS----YNSLISGFLKADRFNRALELF 404

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             M       N  +  + I  H +SG+ L+A + +  +     VP V A N +  GL K 
Sbjct: 405 NHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKT 464

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G +  A  +  + L  +   P    Y + I    ++  A++ +++  EM +  C P+ + 
Sbjct: 465 GRLGMAKRVFHE-LKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLA 523

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            +++I  + K G   EA K+F  L+E  L  E     Y+ +L
Sbjct: 524 MNSLIDMLYKAGRGNEAWKIFYELKEMNL--EPTDCTYNTLL 563



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 134/308 (43%), Gaps = 24/308 (7%)

Query: 153  ASYNALAYCLSRNNLFRAADQV----------PE------LMDSQG---RIAEMLEILEK 193
             SYNAL   L   +L   A+++          P+      ++D+ G   RI +ML+I E+
Sbjct: 767  GSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEE 826

Query: 194  MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
            M     K     Y  +I  L   + LD  + ++ ++  +        Y  L+ GL K G 
Sbjct: 827  MHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGN 886

Query: 254  VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
            +     LF EM E G   + AIY +L+ G    G   K C+L + +V+ G   D+  Y  
Sbjct: 887  IEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTV 946

Query: 314  IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
            +I  LC   + +     F+      L PD  T N L+    + GR++    L   MEK  
Sbjct: 947  VIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKK- 1005

Query: 374  FSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKK 430
              +A +L  +   +  +GK  +   A  ++EEL  KG+  +V  YN L+      G  + 
Sbjct: 1006 -GIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPEN 1064

Query: 431  ALYLFGKM 438
            A   +G+M
Sbjct: 1065 AFAAYGRM 1072



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 147/342 (42%), Gaps = 45/342 (13%)

Query: 240  AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK-- 297
            +Y  LI GL     +    ELF EMK  G   D   Y ++++ +   GK  +  D+LK  
Sbjct: 768  SYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAM---GKSMRIEDMLKIQ 824

Query: 298  -DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             ++ + GY++    YN+II GL + K  D+A  L+   + +  +P   T  PLL    + 
Sbjct: 825  EEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKD 884

Query: 357  GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN 416
            G ++                  D E  F+                E L+     +  IYN
Sbjct: 885  GNIE------------------DAEALFD----------------EMLECGCEPNCAIYN 910

Query: 417  ILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
            IL+      G+ +K   LF  M  +G+N ++ S  +++ I      G + +      ++ 
Sbjct: 911  ILLNGYRIAGDTEKVCELFESMVEQGMNPDIKS--YTVVIDTLCADGRLNDGLSYFKQLT 968

Query: 475  EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
            +M   P +  YN L  GL K G ++ A+ L  D +      P  + Y   IL++ ++G+A
Sbjct: 969  DMGLEPDLITYNLLIHGLGKSGRLEEALSLYND-MEKKGIAPNLYTYNSLILYLGKAGKA 1027

Query: 535  EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
             +  ++  E+  +G  PN    +A+I G    G+ E A   +
Sbjct: 1028 AEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAY 1069



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 81/164 (49%)

Query: 182  GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
            G   ++ E+ E M      PD+ +YT +I  L A+  L+  L  ++++    +E D++ Y
Sbjct: 920  GDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITY 979

Query: 242  VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
              LI GL K GR+     L+ +M++ GI  +   Y  LI  L   GK  +A  + ++L+ 
Sbjct: 980  NLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLA 1039

Query: 302  SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
             G++ ++  YN++I G       + A+  +   +     P+ ST
Sbjct: 1040 KGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSST 1083



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 57/132 (43%)

Query: 180  SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
            + GR+ + L   +++     +PD+  Y  +I  L     L+  L ++ +M+K  +  ++ 
Sbjct: 953  ADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLY 1012

Query: 240  AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
             Y +LI+ L K G+     +++ E+   G   +   Y  LI G    G    A      +
Sbjct: 1013 TYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRM 1072

Query: 300  VDSGYRADLGIY 311
            +  G R +   Y
Sbjct: 1073 IVGGCRPNSSTY 1084


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 196/413 (47%), Gaps = 9/413 (2%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L +L +MR     P    +T +I V   +  +   ++V  EM       +V+   TL+ G
Sbjct: 279 LGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKG 338

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            CK G +    ELF +M ENGI  +   Y V+IE     G + KA ++   + +      
Sbjct: 339 YCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPT 398

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +   NS+I G  + +  ++A KLF+  V   +A  F T N LL    + G+M     +  
Sbjct: 399 VFNVNSLIRGYLKARSPEEASKLFDEAVACGIANVF-TYNSLLSWLCKEGKMSEACSIWE 457

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYNILMGALLE 424
           +M  ++  V   +  +   ++G  ++  M  A  VF E+  KG   ++  Y++LM    +
Sbjct: 458 KM--VRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFK 515

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G+ + A  L+ +MRG N+  +  + +I I    ++G   E+ +   K+++   +P+   
Sbjct: 516 KGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMT 575

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YNC+  G  K G +++A+ +  + +  +   P  F Y   I   C+S   +  ++V++EM
Sbjct: 576 YNCIIDGFVKEGSVNSALAVYTE-MCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEM 634

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             +G   +  +  A+I G C+ G +  A ++ + L+E  L    N +VY  ++
Sbjct: 635 KNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGL--SPNKVVYSSMI 685



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 217/475 (45%), Gaps = 27/475 (5%)

Query: 161 CLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLD 220
           CL+  N+F     + EL+ +   I E  ++  KM     K D    + MIR    E  L+
Sbjct: 188 CLTVMNIF-----LSELVKNN-MIREARDVYNKMASKGVKGDCATISVMIRASMREGKLE 241

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280
                + E K   VE D  AY  +I  +CK    V    L REM++ G +    I+  +I
Sbjct: 242 EAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVI 301

Query: 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
              + +GK+ +A  +  +++  G   ++ +  +++ G C+    D A +LF+   ++ + 
Sbjct: 302 GVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGIC 361

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-----LKFSVAADLEKFFEFLVGKEERIM 395
           P+  T   ++  C + G MD  +++  QM+        F+V + +  + +    +E    
Sbjct: 362 PNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEE---- 417

Query: 396 MALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
            A  +F+E    G ++V  YN L+  L + G++ +A  ++ KM    +  + +S++  I 
Sbjct: 418 -ASKLFDEAVACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMIL 476

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG-NVAS 514
            H + GD+  A     +++E    P++  Y+ L  G  K G+ + A  L     G N+A 
Sbjct: 477 GHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIA- 535

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P++F   + I  +C++G   +  + L ++ QEG  P  +  + II G  K G++  A  
Sbjct: 536 -PSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALA 594

Query: 575 VFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKL 629
           V+T +   K+    N   Y  ++    K    DL L  +       ++K KG +L
Sbjct: 595 VYTEM--CKIGVSPNVFTYTNLINGFCKSNNMDLALKVM------DEMKNKGIEL 641



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 180/398 (45%), Gaps = 12/398 (3%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +VF Y +++  L  E  +     +WE+M +  V   V++Y  +I+G C+ G +   + +F
Sbjct: 432 NVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVF 491

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            EM E G+  +   Y VL++G   +G    A  L   +            N II GLC+ 
Sbjct: 492 VEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKA 551

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            +  ++    +  VQ+   P   T N ++    + G +++   +  +M   K  V+ ++ 
Sbjct: 552 GRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEM--CKIGVSPNVF 609

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
            +   + G  K   + +AL V +E+K KG    V +Y  L+      G++  A  L  ++
Sbjct: 610 TYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSEL 669

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
           + + L  N + +S  I    +  ++  A   H ++I       +  Y  L  GL K G++
Sbjct: 670 QEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKL 729

Query: 499 DAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
             A  L  + L   A G  P    Y++ I  +C  G+ E   ++L +M ++   P   I 
Sbjct: 730 LFASELYAEML---AKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIY 786

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           + +I+G  K G L+EA ++   + ++ L+ +  T  YD
Sbjct: 787 NTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTT--YD 822



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 124/286 (43%), Gaps = 34/286 (11%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G +   L +  +M +    P+VF YT +I       N+D  L+V +EMK   +E DV  
Sbjct: 586 EGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTV 645

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G C+ G +V   +L  E++E G+  ++ +Y  +I G      +  A  L K ++
Sbjct: 646 YCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMI 705

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G   DL IY ++I GL +  +   A +L+   +   + PD  T + L+      G+++
Sbjct: 706 NEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLE 765

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
           N  K+L  M                      +R  M   VF            IYN L+ 
Sbjct: 766 NAQKILEDM----------------------DRKCMTPTVF------------IYNTLIT 791

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
              + G +++A  L  +M    L  +  ++ I +   V+ G++   
Sbjct: 792 GHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVKDGNLFSG 837



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/424 (19%), Positives = 170/424 (40%), Gaps = 70/424 (16%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+++E   I EKM R   +P V +Y  MI     + ++D+   V+ EM +  ++ +++ 
Sbjct: 446 EGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLIT 505

Query: 241 YVTL-----------------------------------IMGLCKGGRVVRGHELFREMK 265
           Y  L                                   I GLCK GR     +  +++ 
Sbjct: 506 YSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLV 565

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           + G +     Y  +I+G V EG V  A  +  ++   G   ++  Y ++I G C+    D
Sbjct: 566 QEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMD 625

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
            A K+ +      +  D +    L+      G M N  +LL++++++  S          
Sbjct: 626 LALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLS---------- 675

Query: 386 FLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
                                    +  +Y+ ++    ++  ++ AL+L  +M    +  
Sbjct: 676 ------------------------PNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPC 711

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           +   ++  I   ++ G +L A E + +++    +P +  Y+ L  GLC  G+++ A  ++
Sbjct: 712 DLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKIL 771

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
            D +      PT F Y   I    + G  ++   + NEM  +G  P++     +++G  K
Sbjct: 772 ED-MDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVK 830

Query: 566 HGTL 569
            G L
Sbjct: 831 DGNL 834


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 132/564 (23%), Positives = 223/564 (39%), Gaps = 93/564 (16%)

Query: 65  PNQKT--QSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQW-----GPQVVTELSKLRRV 117
           P Q+T   S  ++        H+S I R            W      P + + L      
Sbjct: 15  PLQRTFSTSKSTNENDTHFITHISDIVR--------GNLSWKIAFNDPSISSTLK----- 61

Query: 118 TPDLVAEVL-KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE 176
            P  V +VL    ++  LA +FF++ G  K   H   S+  L + L +N LF  A+ +  
Sbjct: 62  -PHHVEQVLINTLHDSKLALRFFNFLGLHKNMNHTTTSFAILVHALVQNKLFWPANSLLH 120

Query: 177 LMDSQG------------------------------------RIAEMLEILEKMRRNLCK 200
            +  +G                                    R+ + + +L  M  N   
Sbjct: 121 TLLLRGSDPKFVFEKFLESHKQCKFSSTLGFDFLVHSYLQNTRVFDAVVVLRLMLGNTLL 180

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+V   +A++  L   R       V++E     V+ D      +I  LC+     R  E 
Sbjct: 181 PEVRTLSAILNGLLRIRKFILVWEVFDESVNAGVKPDPYTCSAVIRSLCELKDFCRAKEK 240

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              M+ N   +    Y VLI GL   G V +A ++ K L + G + D+  Y +++ G CR
Sbjct: 241 ILWMESNRFDLSIVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCR 300

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           V+QFD    L    V+    P  + V+ L+    + G +D+ + L+ ++ +  F     L
Sbjct: 301 VQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGF-----L 355

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
              F                             +YN L+ AL +  ++ KA  L+  M  
Sbjct: 356 PNLF-----------------------------VYNALINALCKGEDLDKAELLYKNMHS 386

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
           +NL +N +++SI I    + G +  A     ++IE     ++  YN L  G CK G++ A
Sbjct: 387 MNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSA 446

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A  L    + N    PT   +   I   C+  + EK  ++  EM ++   P+    +A+I
Sbjct: 447 AEFLYTKMI-NEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALI 505

Query: 561 SGMCKHGTLEEARKVFTNLRERKL 584
            G+C    + EA K+F  + ERK+
Sbjct: 506 YGLCSTNEMAEASKLFDEMVERKI 529



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 186/403 (46%), Gaps = 3/403 (0%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ +  ++  +M      P V+ +TA+I  L +   +    ++++EM +  ++   + Y 
Sbjct: 478 QVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYN 537

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            +I G CK   + +  EL  +M  NG++ D   Y  LI GL   G+V  A D + DL   
Sbjct: 538 VMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKK 597

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
             + +   Y++++ G C   +  +A       +Q  +  D      L+    +   M   
Sbjct: 598 NLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRL 657

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL-KGKGYSSVPIYNILMGA 421
           F LL +M        + +         KE     + +  + +   K + +V  Y   M  
Sbjct: 658 FGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNG 717

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L ++GE+ +A +LF KM   N+  NS+++   +    + G++ EA + H+++++   + +
Sbjct: 718 LCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLK-GLLAN 776

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
            A YN L +G CK+G +  A  ++ +   N    P    Y+  I   CRSG+    +E+ 
Sbjct: 777 TATYNILIRGFCKLGRLIEATKVLSEMTEN-GIFPDCITYSTIIYEHCRSGDVGAAVELW 835

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           + M ++G  P+ V  + +I G C +G L++A ++  ++  R L
Sbjct: 836 DTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGL 878



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 188/422 (44%), Gaps = 11/422 (2%)

Query: 187 MLEILE----KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ML++ E    +M  +  +  ++ Y ++I       +L A   ++ +M  + +E     + 
Sbjct: 408 MLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFT 467

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TLI G CK  +V +  +L+REM E  I      +  LI GL    ++ +A  L  ++V+ 
Sbjct: 468 TLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVER 527

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
             +     YN +I G C+    DKA++L E  + + L PD  T  PL+      GR+   
Sbjct: 528 KIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAA 587

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
              +  + K    +              + R+  AL    E+  +G +  +  + +L+  
Sbjct: 588 KDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDG 647

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
            ++  ++K+   L  KM    L  +S+ ++  I  + + G   ++ EC + ++     P+
Sbjct: 648 AMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPN 707

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           V  Y     GLCK+GEID A  L    L  N++  P    Y   +  + + G  ++  ++
Sbjct: 708 VVTYTAFMNGLCKVGEIDRAGHLFEKMLTANIS--PNSVTYGCFLDSLTKEGNMKEATDL 765

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
            +EM + G   N    + +I G CK G L EA KV + + E  +  +   I Y  I+ EH
Sbjct: 766 HHEMLK-GLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDC--ITYSTIIYEH 822

Query: 601 MK 602
            +
Sbjct: 823 CR 824


>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
          Length = 879

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 195/474 (41%), Gaps = 100/474 (21%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL-- 248
            E MR    +P+ F +T+++   A  R++   L   EEMK + +E  ++ Y  LI G   
Sbjct: 265 FENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAK 324

Query: 249 ---------------------------------CKGGRVVRGHELFREMKENGI------ 269
                                            C+ G + R  EL REM+E+GI      
Sbjct: 325 INDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDV 384

Query: 270 -------------------LIDR----------AIYGVLIEGLVGEGKVGKACDLLKDLV 300
                              + +R            YG L+   V  GKV KA  + K++ 
Sbjct: 385 YHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEME 444

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + +   Y+ +I G   +  F  A+ +FE  ++  L PD +  N L+    +MG MD
Sbjct: 445 SCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMD 504

Query: 361 NFFKLLAQMEKLK--------------FSVAADLEKFFEFLVGKEERIMMALDVFEELKG 406
               +L +M+K +              ++VA D++               ALD  + ++ 
Sbjct: 505 RAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKS--------------ALDTLDLMRR 550

Query: 407 KG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G   +V  YN L+  L+   +V++A+ +  KM    +  N  +++I ++ +  SGDI +
Sbjct: 551 SGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGK 610

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A E   KI E      V  Y  L +  CK G + +A+ + R+         T F Y + I
Sbjct: 611 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT-FIYNILI 669

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
               R G+  +  +++ +M ++G PPN    ++ I+  CK G ++ A KV   +
Sbjct: 670 DGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEM 723



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 16/217 (7%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           +YNAL + L R +                ++   + +L+KM      P+   YT ++R  
Sbjct: 559 TYNALIHGLVRKH----------------KVQRAVSVLDKMSIAGITPNEHTYTIIMRGY 602

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
           AA  ++      + ++K+  ++ DV  Y TL+   CK GR+     + REM    I  + 
Sbjct: 603 AASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT 662

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
            IY +LI+G    G V +A DL+K + + G   ++  Y S I   C+     +A K+ E 
Sbjct: 663 FIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEE 722

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
            V   L P+  T   L+   A +   D   K   +M+
Sbjct: 723 MVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMK 759



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 109/251 (43%), Gaps = 7/251 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +   L+ L+ MRR+ C P V  Y A+I  L  +  +   + V ++M    +  +   Y
Sbjct: 536 GDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTY 595

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++ G    G + +  E F ++KE+G+ +D  IY  L+      G++  A  + +++  
Sbjct: 596 TIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSF 655

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                +  IYN +I G  R     +A  L +   +D + P+  T    +  C + G M  
Sbjct: 656 QKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQR 715

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM---ALDVFEELKGKGYS-SVPIYNI 417
             K++ +M  +         K +  L+    R+ +   AL  FEE+K  G       Y+ 
Sbjct: 716 AEKVIEEMVDVGLKPNV---KTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHC 772

Query: 418 LMGALLEIGEV 428
           L+ +LL    V
Sbjct: 773 LVTSLLSRATV 783



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 52/109 (47%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + E  +++++M+ +   P++  YT+ I       ++    +V EEM    ++ +V  
Sbjct: 675 RGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKT 734

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
           Y TLI G  +     R  + F EMK  G+  D A Y  L+  L+    V
Sbjct: 735 YTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATV 783


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 181/401 (45%), Gaps = 24/401 (5%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG   +   + ++M      P V  YT +IR L  E  +     ++  M+   +  ++  
Sbjct: 206 QGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYT 265

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T++ G CK   V +  EL+ EM  +G+L +   +G+LI+GL    ++  A   L D+ 
Sbjct: 266 YNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMA 325

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   ++ +YN +I G C+     +A  L     + ++ PD  T + L+     + RM+
Sbjct: 326 SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRME 385

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
               LL +M+K  F   A           KE  +  A++V  ++  KG   ++  ++ L+
Sbjct: 386 EADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               + G+++ A+ L+ +M    L  + ++++  I  H + G+  EA   H ++ E    
Sbjct: 446 DGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLH 505

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+V   +CL  GLCK G I  A+ L     G   +G                        
Sbjct: 506 PNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKT--------------------- 544

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
             NE+ +  C PN V+ +A+I G+C  G + +A K F+++R
Sbjct: 545 --NELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMR 583



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 190/403 (47%), Gaps = 19/403 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E L +  KM      P + A   ++  L  +   D   +V+ +M       +V+ Y
Sbjct: 140 GLVEEALWVYYKMD---VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTY 196

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G C+ G  ++   LF EM E  I     IY +LI GL GE ++ +A  + + + +
Sbjct: 197 GTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRN 256

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           SG   +L  YN+++ G C++    KA +L+   + D L P+  T   L+    +   M +
Sbjct: 257 SGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVS 316

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYNIL 418
             K L  M    F V  ++  +   + G  K   +  AL +  E+ K +    V  Y+IL
Sbjct: 317 ARKFLIDMA--SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSIL 374

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L  +  +++A  L  +M+      N+++++  I  + + G++ +A E  +++ E   
Sbjct: 375 IKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGI 434

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            P++  ++ L  G CK G+++AAM     M+++  L +V +      Y   I    + G 
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVA------YTALIDGHFKDGN 488

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
            ++   +  EM + G  PN    S +I G+CK G + +A K+F
Sbjct: 489 TKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 117/481 (24%), Positives = 209/481 (43%), Gaps = 61/481 (12%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA-----DQVPELMDSQ-GRIA-EM 187
           A + FH   ++     N   Y+A+ + L+   L+  A     D +  L  S+  RI   +
Sbjct: 53  ALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDLIQCLQKSRRSRICCSV 112

Query: 188 LEILEKMRRNLCKPDVF-----AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
             +L ++  +   P+VF     A++ M  V  A         +W   K D++ A + A  
Sbjct: 113 FNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEA---------LWVYYKMDVLPA-MQACN 162

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++ GL K GR     +++ +M   G   +   YG LI+G   +G   KA  L  ++++ 
Sbjct: 163 MVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEK 222

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
                + IY  +I GLC   +  +A  +F       + P+  T N +         MD +
Sbjct: 223 KIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTM---------MDGY 273

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGA 421
            K+ A ++K                         AL+++ E+ G G   +V  + IL+  
Sbjct: 274 CKI-AHVKK-------------------------ALELYXEMLGDGLLPNVVTFGILIDG 307

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L +  E+  A      M    +  N   ++  I  + ++G++ EA   H++I +   +P 
Sbjct: 308 LCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPD 367

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V  Y+ L KGLC +  ++ A  L+++ +      P    Y   I   C+ G  EK IEV 
Sbjct: 368 VFTYSILIKGLCGVDRMEEADGLLQE-MKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVC 426

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
           ++MT++G  PN +  S +I G CK G +E A  ++T +  + LL   + + Y  ++  H 
Sbjct: 427 SQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLL--PDVVAYTALIDGHF 484

Query: 602 K 602
           K
Sbjct: 485 K 485



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 95/238 (39%), Gaps = 32/238 (13%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRN--NLFRAADQVPE------------LMDS---QGRI 184
           K+KG+  N  +YN L   YC   N         Q+ E            L+D     G++
Sbjct: 395 KKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKM 454

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
              + +  +M      PDV AYTA+I     + N     R+ +EM++  +  +V     L
Sbjct: 455 EAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCL 514

Query: 245 IMGLCKGGRVVRGHELF-------------REMKENGILIDRAIYGVLIEGLVGEGKVGK 291
           I GLCK GR+    +LF              E+  +    +  +Y  LI+GL  +G++ K
Sbjct: 515 IDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFK 574

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
           A     D+  SG R D+     II G  R         L    ++  + P+ S    L
Sbjct: 575 ASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVL 632



 Score = 39.3 bits (90), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 78/195 (40%), Gaps = 22/195 (11%)

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           +KA +LF     DD  PD  TV   L  CA++G +D    + A +          L    
Sbjct: 731 NKALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSL 790

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
             +  K   I  A  +F+  + K  ++    ++++G  L  G+ ++AL LF +M+  N  
Sbjct: 791 INMYSKCGEIGTARRLFDGTQKKDVTTWT--SMIVGHALH-GQAEEALQLFTEMKETNKR 847

Query: 445 V------NSLSFSIAIQCHVESGDILEACECHNKIIE------------MSQVPSVAAYN 486
                       S+ +   V    +L AC  H  ++E             S  P ++ + 
Sbjct: 848 ARKNKRNGEXESSLVLPNDVTFMGVLMACS-HAGLVEEGKQHFRSMKEDYSLRPRISHFG 906

Query: 487 CLTKGLCKIGEIDAA 501
           C+   LC+ G +  A
Sbjct: 907 CMVDLLCRAGLLTEA 921


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 189/409 (46%), Gaps = 17/409 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G     L +L KM  +  K +V  Y+A++  L  + N      ++ EM +  +  +V+ Y
Sbjct: 59  GDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTY 118

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I G C  G+     +L R+M E  I  D   +  LI   V EGKV  A +L ++++ 
Sbjct: 119 NCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLR 178

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR--M 359
                    Y+S+I G C+  + + A  +F++ V    +PD  T+N L+  C    R  +
Sbjct: 179 RNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLI 238

Query: 360 DNFFKL----LAQ---MEKLKFSVAADLEKFFEFLV-----GKEERIMMALDVFEELKGK 407
             F ++    +AQ    E +   V+ D+      L      GK E+ +    VF+  K K
Sbjct: 239 HGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQ--KSK 296

Query: 408 GYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
                   NI++  + +  +V +A  LF  +    +E + ++++I I   V+ G+ L A 
Sbjct: 297 MDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAE 356

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
           + + +++    +PS   YN +  G CK   ++ A  +V D + +    P    ++  I  
Sbjct: 357 DIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMV-DSMVSEGCSPDVVTFSTLIKG 415

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
            C++G  +  +E+ +EM Q G   + +  +A+I G CK G L  A+ +F
Sbjct: 416 YCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIF 464



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 103/459 (22%), Positives = 199/459 (43%), Gaps = 56/459 (12%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C  +V  +T ++  L  E  +   L + + M ++  + D + Y T++ G+CK G  V   
Sbjct: 6   CPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSAL 65

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            + R+M E+ I  +  IY  +++ L  +G   KA ++  ++ + G   ++  YN +I G 
Sbjct: 66  NMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGY 125

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK------- 371
           C   ++  A +L    ++ ++ PD  T + L+    + G++    +L  +M +       
Sbjct: 126 CSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTT 185

Query: 372 ----------LKFSVAADLEKFFEFLVGKE-----------------------------E 392
                      K S   D +  F+ +V K                               
Sbjct: 186 ITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVG 245

Query: 393 RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
            + +A D+F+E+   G S  +   N L+  L E G+++KAL +F   +   +++++ + +
Sbjct: 246 NVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCN 305

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA--MMLVRDCL 509
           I I    +   + EA +  N +        V  YN L     K G    A  + L   C 
Sbjct: 306 IIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCK 365

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
           G +   P+   Y   +   C+    E+  ++++ M  EGC P+ V  S +I G CK G +
Sbjct: 366 GII---PSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRV 422

Query: 570 EEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADL 608
           ++  ++F+ + +R L+  A+TI Y+ ++  H   K  DL
Sbjct: 423 DDGLELFSEMCQRGLV--ADTITYNALI--HGFCKVGDL 457



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/421 (21%), Positives = 182/421 (43%), Gaps = 43/421 (10%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           +KG   N  +YN +   YC                  S G+ ++  ++L  M      PD
Sbjct: 108 EKGIFPNVLTYNCMIDGYC------------------SYGKWSDAEQLLRDMIERNIDPD 149

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V  ++A+I     E  +     ++ EM +  +    + Y ++I G CK  R+     +F 
Sbjct: 150 VVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFD 209

Query: 263 EMKENG-----ILIDRAIYGV------LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
            M   G     I ++  I G       LI G    G V  A DL ++++ +G   D+   
Sbjct: 210 LMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTC 269

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N+++ GLC   + +KA ++F+V  +  +  D +T N ++    +  ++D  + L   +  
Sbjct: 270 NTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLP- 328

Query: 372 LKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGE 427
               V  D+   +  L+G   KE   + A D++ E+  KG   S   YN ++    +   
Sbjct: 329 -VNGVETDVVT-YNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNR 386

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           +++A  +   M       + ++FS  I+ + ++G + +  E  +++ +   V     YN 
Sbjct: 387 LEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNA 446

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           L  G CK+G+++ A  +  +    V+SG  P    +   +  +C   E +K + +L ++ 
Sbjct: 447 LIHGFCKVGDLNGAQDIFEE---MVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDLQ 503

Query: 546 Q 546
           +
Sbjct: 504 K 504



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 147/317 (46%), Gaps = 16/317 (5%)

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +V++G  A++  + +++ GLCR  +  +A  L +  V++   PD  T   ++    ++G 
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNI 417
             +   +L +M++ +      +       + K+   + A ++F E+  KG + +V  YN 
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++      G+   A  L   M   N++ + ++FS  I   V+ G +  A E + +++  +
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRN 180

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAA-----MMLVRDC------LGNVASGPTEFKYALTIL 526
             P+   Y+ +  G CK   ++ A     +M+ + C      L  +  G    K  L I 
Sbjct: 181 IFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHL-IH 239

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
             C+ G      ++  EM   G  P+ V C+ +++G+C++G LE+A ++F   ++ K+  
Sbjct: 240 GFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDL 299

Query: 587 EANTIVYDEILIEHMKK 603
           +  T     I+I  M K
Sbjct: 300 DTATC---NIIINGMCK 313



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 3/199 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ E  ++   +  N  + DV  Y  +I V   E N      ++ EM    +    + Y 
Sbjct: 316 KVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYN 375

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +++ G CK  R+    ++   M   G   D   +  LI+G    G+V    +L  ++   
Sbjct: 376 SMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQR 435

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G  AD   YN++I G C+V   + A  +FE  V   + PD  T   +L   A +      
Sbjct: 436 GLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSML---AGLCTKAEL 492

Query: 363 FKLLAQMEKLKFSVAADLE 381
            K L  +E L+ SV  +LE
Sbjct: 493 QKGLTMLEDLQKSVDHELE 511


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 122/544 (22%), Positives = 234/544 (43%), Gaps = 39/544 (7%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           R + P  VA V+K++ +P  A + F+ A  + G+KH  ++Y  +   L  +  F   +++
Sbjct: 3   RTLLPKHVAAVVKIQTDPLKALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKL 62

Query: 175 PELM--------------------DSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
              M                      +G++ E ++  E+M    C P V ++ A++ +L 
Sbjct: 63  LSEMRENVNNALLEGAYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILV 122

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
                +   +V+  M+   V++DV  Y   I   CK  R      L R M E G   +  
Sbjct: 123 EFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAV 182

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
            Y  ++ GL   G+   A +L  +++      D+  +N ++  LC+     ++ +L    
Sbjct: 183 AYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKV 242

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFF---KLLAQMEKLKFSVAADLE----KFFEFL 387
           ++  + P+  T N  +      G +D      +++   E L+  V    E     +   +
Sbjct: 243 LKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSII 302

Query: 388 VG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLE 444
            G  K+  +  A  V ++   KG+      Y  L+    + G+  +A+ +F    G  L 
Sbjct: 303 DGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLR 362

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            + + ++  I+   + G IL A +  N++ E   +P++  YN +  GLCK+G +  A  L
Sbjct: 363 PSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHL 422

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
           V D +      P  F Y   I   C+  + +   E++N M  +G  P+ +  + +++G+C
Sbjct: 423 VDDAIAK-GCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLC 481

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKA 624
           K G  EE  ++F  + E+      N I Y+ I+    K K  +  +       L  ++K+
Sbjct: 482 KAGKSEEVMEIFKAMEEKG--CTPNIITYNIIVDSLCKAKKVNEAVD------LLGEMKS 533

Query: 625 KGCK 628
           KG K
Sbjct: 534 KGLK 537



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 156/394 (39%), Gaps = 75/394 (19%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           KPD F Y ++I     + + D  + V+++     +   ++ Y TLI GL + G ++   +
Sbjct: 327 KPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQ 386

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L  EM ENG L +   Y ++I GL   G V  A  L+ D +  G   D+  YN++I G C
Sbjct: 387 LMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYC 446

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQMEKLKFSVA 377
           +  + D A ++        + PD  T N LL  +C A                       
Sbjct: 447 KQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKA----------------------- 483

Query: 378 ADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
                      GK E +M   ++F+ ++ KG + ++  YNI++ +L +  +V +A+ L G
Sbjct: 484 -----------GKSEEVM---EIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLG 529

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M+   L+ + +SF                                     L  G CKIG
Sbjct: 530 EMKSKGLKPDVVSFGT-----------------------------------LFTGFCKIG 554

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           +ID A  L R          T   Y + +            +++ + M   GC P+    
Sbjct: 555 DIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTY 614

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             +I G CK G + +  K      E++ +    T
Sbjct: 615 RVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTT 648



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 115/262 (43%), Gaps = 21/262 (8%)

Query: 129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR----- 183
           + +P  A   F   G  KG + +   YN L   LS+  L   A Q+   M   G      
Sbjct: 343 DGDPDRAMAVFK-DGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIW 401

Query: 184 --------------IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
                         +++   +++      C PD+F Y  +I     +  LD+   +   M
Sbjct: 402 TYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRM 461

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
               +  DV+ Y TL+ GLCK G+     E+F+ M+E G   +   Y ++++ L    KV
Sbjct: 462 WSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKV 521

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNP 348
            +A DLL ++   G + D+  + ++  G C++   D AY+LF  +  Q D+    +T N 
Sbjct: 522 NEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNI 581

Query: 349 LLVCCAEMGRMDNFFKLLAQME 370
           ++   +E   M+   KL + M+
Sbjct: 582 IVSAFSEQLNMNMAMKLFSVMK 603


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 163/346 (47%), Gaps = 10/346 (2%)

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI--YGVLIEGLVGEGKVGKACD 294
           DV +Y  L+  LC  G+  +  +L R M E G +    +  Y  +I+G   EG V KACD
Sbjct: 194 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACD 253

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           L K++V  G   DL  YNS++  LC+ +  DKA       V   + P+  T N L+   +
Sbjct: 254 LFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYS 313

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS- 410
             G+     ++  +M   + S+  D+      L+G   K  +I  A DVF+ +  KG + 
Sbjct: 314 STGQWKEAVRVFKEMR--RHSILPDVVT-LSMLMGSLCKYGKIKEARDVFDTMAMKGQNP 370

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            V  YNI++      G +     LF  M G  +  +  +F++ I+ +   G + +A    
Sbjct: 371 DVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIF 430

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
           N++ +    P V  Y  +   LC+IG++D AM      + +    P ++ Y   I   C 
Sbjct: 431 NEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYNCLIQGFCT 489

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
            G   K  E+++E+   G   + V  S+II+ +CK G + +A+ +F
Sbjct: 490 HGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIF 535



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 105/426 (24%), Positives = 202/426 (47%), Gaps = 41/426 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + +M ++ + M  +   PD + +  +I+  A    LD  + ++ EM+   V+ DV+
Sbjct: 384 TKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVV 443

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I  LC+ G++    E F +M + G+  D+  Y  LI+G    G + KA +L+ ++
Sbjct: 444 TYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEI 503

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +++G   D+  ++SII  LC++ +   A  +F++TV   L PD + V  +L        M
Sbjct: 504 MNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPD-AVVYSML--------M 554

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
           D +                        LVGK E+   AL VF+ +   G   +V +Y  L
Sbjct: 555 DGY-----------------------CLVGKMEK---ALRVFDAMVSAGIEPNVVVYCTL 588

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    +IG + + L LF +M    ++ +++ +SI I    ++G  + A    +++ E   
Sbjct: 589 VNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGI 648

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG-NVASGPTEFKYALTILHVCRSGEAEKI 537
              +  YN + +GL K    D A+ L ++    NV          +  +   R  E  K 
Sbjct: 649 AMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAK- 707

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            ++   +++    PN V  S +I+ + K G +EEA  +F++++      E N+ + + ++
Sbjct: 708 -DLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG--CEPNSRLLNHVV 764

Query: 598 IEHMKK 603
            E +KK
Sbjct: 765 RELLKK 770



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/459 (24%), Positives = 204/459 (44%), Gaps = 52/459 (11%)

Query: 183 RIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAE---RNLDACLRVWEEMKKDLVEADV 238
           R  E L+IL      L C PDVF+Y+ +++ L  +      D  LR+  E    +   +V
Sbjct: 174 RTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAE-GGAVCSPNV 232

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           +AY T+I G  K G V +  +LF+EM + GI  D   Y  ++  L     + KA   L+ 
Sbjct: 233 VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQ 292

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +V+     +   YN++I G     Q+ +A ++F+   +  + PD  T++ L+    + G+
Sbjct: 293 MVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGK 352

Query: 359 MD---NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYS-SV 412
           +    + F  +A   +       D+  +   L G   +  ++   D+F+ + G G +   
Sbjct: 353 IKEARDVFDTMAMKGQ-----NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDF 407

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             +N+L+ A    G + KA+ +F +MR   ++ + +++   I      G + +A E  N+
Sbjct: 408 YTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQ 467

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG---------------------- 510
           +I+    P   AYNCL +G C  G +  A  L+ + +                       
Sbjct: 468 MIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 527

Query: 511 ------------NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
                       NV   P    Y++ +   C  G+ EK + V + M   G  PN V+   
Sbjct: 528 VMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCT 587

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +++G CK G ++E   +F  + +R +  + +TI+Y  I+
Sbjct: 588 LVNGYCKIGRIDEGLSLFREMLQRGI--KPSTILYSIII 624



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 104/462 (22%), Positives = 191/462 (41%), Gaps = 68/462 (14%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELM----------------------DSQG 182
           Q+G   +  +YN++ + L +    RA D+    +                       S G
Sbjct: 260 QRGIPPDLVTYNSVVHALCKA---RAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTG 316

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           +  E + + ++MRR+   PDV   + ++  L     +     V++ M       DV +Y 
Sbjct: 317 QWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYN 376

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++ G    G +V   +LF  M  +GI  D   + VLI+     G + KA  +  ++ D 
Sbjct: 377 IMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDH 436

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + D+  Y ++I  LCR+ + D A + F   +   +APD    N L+      G +   
Sbjct: 437 GVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKA 496

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
            +L++++  +   +  D+  FF  ++    K  R+M A ++F+     G +    +Y++L
Sbjct: 497 KELISEI--MNNGMHLDI-VFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSML 553

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           M     +G+++KAL +F  M    +E                                  
Sbjct: 554 MDGYCLVGKMEKALRVFDAMVSAGIE---------------------------------- 579

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P+V  Y  L  G CKIG ID  + L R+ L      P+   Y++ I  + ++G      
Sbjct: 580 -PNVVVYCTLVNGYCKIGRIDEGLSLFREMLQR-GIKPSTILYSIIIDGLFQAGRTVPAK 637

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
              +EMT+ G   +    + ++ G+ K+   +EA  +F  LR
Sbjct: 638 MKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELR 679



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 162/344 (47%), Gaps = 13/344 (3%)

Query: 244 LIMGLCKGGRVVRGHE-LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           L+ G C+  R     + L     E G + D   Y +L++ L  +GK G+A DLL+ + + 
Sbjct: 165 LLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 224

Query: 303 GYRADLGI--YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           G      +  YN++I G  +    +KA  LF+  VQ  + PD  T N ++    +   MD
Sbjct: 225 GAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMD 284

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKG-YSSVPIYNI 417
                L QM   +  V  +   +   + G     +   A+ VF+E++       V   ++
Sbjct: 285 KAEAFLRQMVNKR--VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSM 342

Query: 418 LMGALLEIGEVKKALYLFGK--MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           LMG+L + G++K+A  +F    M+G N +V   S++I +  +   G +++  +  + ++ 
Sbjct: 343 LMGSLCKYGKIKEARDVFDTMAMKGQNPDV--FSYNIMLNGYATKGCLVDMTDLFDLMLG 400

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P    +N L K     G +D AM++  + + +    P    Y   I  +CR G+ +
Sbjct: 401 DGIAPDFYTFNVLIKAYANCGMLDKAMIIFNE-MRDHGVKPDVVTYRTVIAALCRIGKMD 459

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             +E  N+M  +G  P++   + +I G C HG+L +A+++ + +
Sbjct: 460 DAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEI 503


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 122/526 (23%), Positives = 220/526 (41%), Gaps = 69/526 (13%)

Query: 119 PDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM 178
           P  V  V+K + +P  A + F+   K+ G+KH  ++Y ++   L     F A ++V  L+
Sbjct: 7   PKHVTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEV--LV 64

Query: 179 D----------------------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE 216
           D                       +G++ E + + E+M    C+P VF+Y A++ VL   
Sbjct: 65  DMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDS 124

Query: 217 RNLD-----------------------------------ACLRVWEEMKKDLVEADVMAY 241
              D                                   A LR+   M     E +V+AY
Sbjct: 125 GYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAY 184

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T++ G  +      G+ELF +M  +G+ +  + +  L+  L  +G V +   LL  ++ 
Sbjct: 185 CTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIK 244

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   +L  YN  I GLC+  + D A ++    ++    PD  T N L+    +  +   
Sbjct: 245 RGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQE 304

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IYN 416
               L +M  +   +  D   +   + G  K   + +A  +  +    G+  VP    Y 
Sbjct: 305 AEVYLGKM--VNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGF--VPDQFTYR 360

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  L   GE  +AL LF +  G  ++ N + ++  I+     G ILEA +  N++ E 
Sbjct: 361 SLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEK 420

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
             +P V  +N L  GLCK+G +  A  LV+  +      P  F + + I       + E 
Sbjct: 421 GLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISK-GYFPDIFTFNILIHGYSTQLKMEN 479

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
            +E+L+ M   G  P+    +++++G+CK    E+  + +  + E+
Sbjct: 480 ALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEK 525



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 111/459 (24%), Positives = 187/459 (40%), Gaps = 60/459 (13%)

Query: 133 TLASKFFHWAGKQKGYK---HNFASYNALAYCLSR-NNLFRAADQVPELMDSQGRIAEML 188
           T+   F+    K +GY+      AS   ++ CLS  N L R       ++  +G + E  
Sbjct: 186 TVVGGFYEENFKAEGYELFGKMLAS--GVSLCLSTFNKLLR-------VLCKKGDVKECE 236

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++L+K+ +    P++F Y   I+ L     LD  +R+   + +   + DV+ Y  LI GL
Sbjct: 237 KLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGL 296

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           CK  +         +M   G+  D   Y  LI G    G V  A  ++ D V +G+  D 
Sbjct: 297 CKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQ 356

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             Y S+I GLC   + ++A  LF   +   + P+    N L+   +  G           
Sbjct: 357 FTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQG----------- 405

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGE 427
                                    I+ A  +  E+  KG    V  +NIL+  L ++G 
Sbjct: 406 ------------------------MILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGC 441

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           V  A  L   M       +  +F+I I  +     +  A E  + +++    P V  YN 
Sbjct: 442 VSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNS 501

Query: 488 LTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
           L  GLCK  + +  M     M+ + C       P  F + + +  +CR  + ++ + +L 
Sbjct: 502 LLNGLCKTSKFEDVMETYKTMVEKGC------APNLFTFNILLESLCRYRKLDEALGLLE 555

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           EM  +   P+ V    +I G CK+G L+ A  +F  + E
Sbjct: 556 EMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEE 594



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 103/469 (21%), Positives = 205/469 (43%), Gaps = 58/469 (12%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAE---------------MLE 189
           ++G K +  +YN L Y L +N+ F+ A+     M ++G   +               M++
Sbjct: 279 EQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQ 338

Query: 190 ILEKMRR----NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + E++      N   PD F Y ++I  L  E   +  L ++ E     ++ +V+ Y TLI
Sbjct: 339 LAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLI 398

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GL   G ++   +L  EM E G++ +   + +L+ GL   G V  A  L+K ++  GY 
Sbjct: 399 KGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYF 458

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  +N +I G     + + A ++ +V + + + PD  T N LL    +  + ++    
Sbjct: 459 PDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFED---- 514

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
                                           ++ ++ +  KG + ++  +NIL+ +L  
Sbjct: 515 -------------------------------VMETYKTMVEKGCAPNLFTFNILLESLCR 543

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PSVA 483
             ++ +AL L  +M+  ++  ++++F   I    ++GD+  A     K+ E  +V  S  
Sbjct: 544 YRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTP 603

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            YN +     +   +  A  L ++ + +   GP  + Y L +   C++G      + L E
Sbjct: 604 TYNIIIHAFTEKLNVTMAEKLFQEMV-DRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLE 662

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA-NTI 591
           M + G  P+      +I+ +C    + EA  +   + ++ L+ EA NTI
Sbjct: 663 MMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAVNTI 711


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/480 (22%), Positives = 207/480 (43%), Gaps = 53/480 (11%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G  HN  +YN L  C  R                + +I+  L +L KM +   +P +   
Sbjct: 115 GISHNLYTYNILINCFCR----------------RSQISLALALLGKMMKLGYEPSIVTL 158

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           ++++      + +   + + ++M +     D + + TLI GL    +      L   M +
Sbjct: 159 SSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ 218

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G   +   YGV++ GL   G +  A +LL  +  +   A++ IY+++I  LC+ +  D 
Sbjct: 219 RGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDD 278

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM----------------- 369
           A  LF       + P+  T + L+ C     R  +  +LL+ M                 
Sbjct: 279 ALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALID 338

Query: 370 ----------------EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YS 410
                           E +K S+  D+  +   + G    +R+  A  +FE +  K  + 
Sbjct: 339 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 398

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           +V  YN L+    +   + + + LF +M    L  N+++++  I    ++ D   A    
Sbjct: 399 NVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 458

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
            +++     P++  YN L  GLCK G+++ A M+V + L      PT + Y + I  +C+
Sbjct: 459 KQMVSDGVHPNIMTYNTLLDGLCKNGKLEKA-MVVFEYLQRSKMEPTIYTYNIMIEGMCK 517

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +G+ E   ++   ++ +G  P+ +I + +ISG C+ G  EEA  +F  +RE   L ++ T
Sbjct: 518 AGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 194/469 (41%), Gaps = 55/469 (11%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P +F +  ++  +A  +  D  + + E+M++  +  ++  Y  LI   C+  ++     L
Sbjct: 83  PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 142

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             +M + G          L+ G     ++  A  L+  +V+ GYR D   + ++I GL  
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             +  +A  L +  VQ    P+  T   ++    + G +D  F LL +ME  K      +
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVI 262

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
                  + K      AL++F E++ KG   +V  Y+ L+  L        A  L   M 
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              +  N ++F+  I   V+ G ++EA + ++++I+ S  P +  Y+ L  G C    +D
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 382

Query: 500 AA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ-------- 546
            A     +M+ +DC  NV +      Y   I   C++   ++ +E+  EM+Q        
Sbjct: 383 EAKHMFELMISKDCFPNVVT------YNTLINGFCKAKRIDEGVELFREMSQRGLVGNTV 436

Query: 547 ---------------------------EGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
                                      +G  PN +  + ++ G+CK+G LE+A  VF  L
Sbjct: 437 TYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 496

Query: 580 RERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
           +  K+     TI    I+IE M K  A  V  G   F     L  KG K
Sbjct: 497 QRSKM---EPTIYTYNIMIEGMCK--AGKVEDGWDLF---CSLSLKGVK 537



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 114/246 (46%), Gaps = 19/246 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------------PELMDS---QGRI 184
           + KG + N  +Y++L  CL     +  A ++                  L+D+   +G++
Sbjct: 287 ENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKL 346

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  ++ ++M +    PD+F Y+++I        LD    ++E M       +V+ Y TL
Sbjct: 347 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 406

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK  R+  G ELFREM + G++ +   Y  LI G         A  + K +V  G 
Sbjct: 407 INGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGV 466

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  YN+++ GLC+  + +KA  +FE   +  + P   T N ++    + G++++ + 
Sbjct: 467 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 526

Query: 365 LLAQME 370
           L   + 
Sbjct: 527 LFCSLS 532



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 96/208 (46%), Gaps = 3/208 (1%)

Query: 404 LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
           +K +   S+  +N L+ A+ ++ +    + L  KM+ L +  N  +++I I C      I
Sbjct: 77  VKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQI 136

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
             A     K++++   PS+   + L  G C    I  A+ LV D +  +   P    +  
Sbjct: 137 SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALV-DQMVEMGYRPDTITFTT 195

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I  +    +A + + +++ M Q GC PN V    +++G+CK G ++ A  +   +   K
Sbjct: 196 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 255

Query: 584 LLTEANTIVYDEILIEHMKKKTADLVLS 611
           +  EAN ++Y  ++    K +  D  L+
Sbjct: 256 I--EANVVIYSTVIDSLCKYRHEDDALN 281


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 137/635 (21%), Positives = 246/635 (38%), Gaps = 122/635 (19%)

Query: 89  ARFITDAFRKNQFQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKG 147
           AR I DA       +G +    L + R +++  LV EVL++   P+    FF WAG+Q G
Sbjct: 101 ARAIADAVSGGDDVFGSKSQKFLRQFREKLSESLVIEVLRLIERPSAVISFFVWAGRQIG 160

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-----------------------GRI 184
           YKH    YNAL   + R++     ++VPE +  Q                       G  
Sbjct: 161 YKHTSPVYNALVDLIVRDD----DEKVPEELLQQIRDDDKEVFGEFLNVLVRKYCRSGSF 216

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLD-----------ACLRV-------- 225
           +  LE L +++    +P    Y  +I+       LD           A LR+        
Sbjct: 217 SIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMSLANLRMDGFTLRCY 276

Query: 226 ---------WEE----MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
                    W E    M+ +    D + Y  LI GLC+        +    M+    L +
Sbjct: 277 AYSLCKVGKWREALTLMETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPN 336

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              Y  L+ G + + ++G+   +L  ++  G      I+NS++   C       AYKL +
Sbjct: 337 VVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLK 396

Query: 333 VTVQDDLAPDFSTVNPLL-----------------------------------------V 351
             V+    P +   N L+                                          
Sbjct: 397 KMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTR 456

Query: 352 CCAEMGRMDNFFKLLAQMEKLKF-SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY- 409
           C    G+ +  F ++ +M    F    +   K   +L     ++ +A  +FEE+K  G  
Sbjct: 457 CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNA-SKMELAFLLFEEMKRGGLV 515

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
           + V  Y I++ +  + G +++A   F +MR +    N ++++  I  ++++  +  A E 
Sbjct: 516 ADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANEL 575

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG----------------NVA 513
              ++    +P++  Y+ L  G CK G+++ A  +     G                + +
Sbjct: 576 FETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNS 635

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
             P    Y   +   C+    E+  ++L+ M+ EGC PN+++  A+I G+CK G L+EA+
Sbjct: 636 ERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQ 695

Query: 574 KVFTNLRERKLLTEANTIVYDEILIEHMKKKTADL 608
           +V   + E      A    Y  ++  + K K  DL
Sbjct: 696 EVKAEMSEHGF--PATLYTYSSLIDRYFKVKRQDL 728



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/418 (24%), Positives = 180/418 (43%), Gaps = 36/418 (8%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G+  +   ++ +M      PD   Y+ ++  L     ++    ++EEMK+  + ADV 
Sbjct: 460 SAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVY 519

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  ++   CK G + +  + F EM+E G   +   Y  LI   +   KV  A +L + +
Sbjct: 520 TYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETM 579

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G   ++  Y+++I G C+  Q +KA ++FE        PD                +
Sbjct: 580 LSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPD----------------V 623

Query: 360 DNFFKLLAQMEKLKFSV---AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-Y 415
           D +FK        + +V    A L+ F      K  R+  A  + + +  +G     I Y
Sbjct: 624 DMYFKQYDDDNSERPNVVIYGALLDGF-----CKLHRVEEARKLLDAMSMEGCEPNQIVY 678

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           + L+  L ++G++ +A  +  +M          ++S  I  + +      A +  +K++E
Sbjct: 679 DALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLE 738

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCR 530
            S  P+V  Y  +  GLCK+G+ D A     MM  + C  NV +      Y   I    R
Sbjct: 739 NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT------YTAMIDGFGR 792

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
            G+ E  +E+L  M  +G  PN V    +I   CK+G L+ A  +   +++    T A
Sbjct: 793 IGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHA 850



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 137/324 (42%), Gaps = 38/324 (11%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E  ++L+ M    C+P+   Y A+I  L     LD    V  EM +    A +  Y 
Sbjct: 655 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYS 714

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +LI    K  R     ++  +M EN    +  IY  +I+GL   GK  +A  L++ + + 
Sbjct: 715 SLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEK 774

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + ++  Y ++I G  R+ + +   +L E      +AP++ T   L+  C + G +D  
Sbjct: 775 GCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVA 834

Query: 363 FKLLAQMEKLKFSV-AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS-VPIYNILMG 420
             LL +M++  +   AA   K  E   G  +  + +L + +E+     +  + +Y +L+ 
Sbjct: 835 HNLLEEMKQTHWPTHAAGYRKVIE---GFNKEFIESLGLLDEIGQDDTAPFLSLYRLLVD 891

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L++   ++ AL L         EV + S ++                          V 
Sbjct: 892 NLIKAQRLEMALRLLE-------EVATFSATL--------------------------VD 918

Query: 481 SVAAYNCLTKGLCKIGEIDAAMML 504
             + YN L + LC   ++D A  L
Sbjct: 919 YSSTYNSLIESLCLANKVDKAFRL 942



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 4/192 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  E  ++++ M    C+P+V  YTAMI        ++ CL + E M    V  + + Y
Sbjct: 759 GKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTY 818

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI   CK G +   H L  EMK+       A Y  +IEG   E    ++  LL ++  
Sbjct: 819 RVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGFNKE--FIESLGLLDEIGQ 876

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFE--VTVQDDLAPDFSTVNPLLVCCAEMGRM 359
                 L +Y  ++  L + ++ + A +L E   T    L    ST N L+       ++
Sbjct: 877 DDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKV 936

Query: 360 DNFFKLLAQMEK 371
           D  F+L ++M K
Sbjct: 937 DKAFRLFSEMSK 948



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 108/255 (42%), Gaps = 44/255 (17%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++L KM  N C P+V  YT MI  L      D   ++ + M++   + +V+ Y  +I G 
Sbjct: 731 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGF 790

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
            + G++    EL   M   G+  +   Y VLI+     G +  A +LL+++  + +    
Sbjct: 791 GRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHA 850

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             Y  +I G    K+F ++  L +   QDD AP F ++  LLV        DN       
Sbjct: 851 AGYRKVIEGF--NKEFIESLGLLDEIGQDDTAP-FLSLYRLLV--------DNLI----- 894

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-----YSSVPIYNILMGALL 423
                                K +R+ MAL + EE+         YSS   YN L+ +L 
Sbjct: 895 ---------------------KAQRLEMALRLLEEVATFSATLVDYSST--YNSLIESLC 931

Query: 424 EIGEVKKALYLFGKM 438
              +V KA  LF +M
Sbjct: 932 LANKVDKAFRLFSEM 946



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 29/174 (16%)

Query: 126 LKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIA 185
           L V +N     K  HW     GY+     +N                   E ++S G   
Sbjct: 831 LDVAHNLLEEMKQTHWPTHAAGYRKVIEGFN------------------KEFIESLG--- 869

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM---KKDLVEADVMAYV 242
               +L+++ ++   P +  Y  ++  L   + L+  LR+ EE+      LV+     Y 
Sbjct: 870 ----LLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSS-TYN 924

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           +LI  LC   +V +   LF EM + G++ +   +  LI+GL    K+ +A  LL
Sbjct: 925 SLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEALLLL 978


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 163/346 (47%), Gaps = 10/346 (2%)

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI--YGVLIEGLVGEGKVGKACD 294
           DV +Y  L+  LC  G+  +  +L R M E G +    +  Y  +I+G   EG V KACD
Sbjct: 181 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACD 240

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           L K++V  G   DL  YNS++  LC+ +  DKA       V   + P+  T N L+   +
Sbjct: 241 LFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYS 300

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS- 410
             G+     ++  +M   + S+  D+      L+G   K  +I  A DVF+ +  KG + 
Sbjct: 301 STGQWKEAVRVFKEMR--RHSILPDVVT-LSMLMGSLCKYGKIKEARDVFDTMAMKGQNP 357

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            V  YNI++      G +     LF  M G  +  +  +F++ I+ +   G + +A    
Sbjct: 358 DVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIF 417

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
           N++ +    P V  Y  +   LC+IG++D AM      + +    P ++ Y   I   C 
Sbjct: 418 NEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYNCLIQGFCT 476

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
            G   K  E+++E+   G   + V  S+II+ +CK G + +A+ +F
Sbjct: 477 HGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIF 522



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/459 (24%), Positives = 204/459 (44%), Gaps = 52/459 (11%)

Query: 183 RIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAE---RNLDACLRVWEEMKKDLVEADV 238
           R  E L+IL      L C PDVF+Y+ +++ L  +      D  LR+  E    +   +V
Sbjct: 161 RTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAE-GGAVCSPNV 219

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           +AY T+I G  K G V +  +LF+EM + GI  D   Y  ++  L     + KA   L+ 
Sbjct: 220 VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQ 279

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +V+     +   YN++I G     Q+ +A ++F+   +  + PD  T++ L+    + G+
Sbjct: 280 MVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGK 339

Query: 359 MD---NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYS-SV 412
           +    + F  +A   +       D+  +   L G   +  ++   D+F+ + G G +   
Sbjct: 340 IKEARDVFDTMAMKGQ-----NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDF 394

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             +N+L+ A    G + KA+ +F +MR   ++ + +++   I      G + +A E  N+
Sbjct: 395 YTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQ 454

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG---------------------- 510
           +I+    P   AYNCL +G C  G +  A  L+ + +                       
Sbjct: 455 MIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 514

Query: 511 ------------NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
                       NV   P    Y++ +   C  G+ EK + V + M   G  PN V+   
Sbjct: 515 VMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCT 574

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +++G CK G ++E   +F  + +R +  + +TI+Y  I+
Sbjct: 575 LVNGYCKIGRIDEGLSLFREMLQRGI--KPSTILYSIII 611



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/414 (21%), Positives = 198/414 (47%), Gaps = 12/414 (2%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + +M ++ + M  +   PD + +  +I+  A    LD  + ++ EM+   V+ DV+
Sbjct: 371 TKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVV 430

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I  LC+ G++    E F +M + G+  D+  Y  LI+G    G + KA +L+ ++
Sbjct: 431 TYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEI 490

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +++G   D+  ++SII  LC++ +   A  +F++TV   L PD    + L+     +G+M
Sbjct: 491 MNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKM 550

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           +   ++   M  +   +  ++  +   + G  K  RI   L +F E+  +G   S  +Y+
Sbjct: 551 EKALRVFDAM--VSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 608

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           I++  L + G    A   F +M    + ++  +++I ++   ++    EA     ++  M
Sbjct: 609 IIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAM 668

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRSGE 533
           +   ++   N +  G+ +   ++ A    +D   +++     P+   Y++ I ++ + G 
Sbjct: 669 NVKINIITLNTMIDGMFQTRRVEEA----KDLFASISRSRLVPSVVTYSIMITNLIKEGL 724

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
            E+  ++ + M   GC PN  + + ++  + K   +  A    + + ER    E
Sbjct: 725 VEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLE 778



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 104/462 (22%), Positives = 191/462 (41%), Gaps = 68/462 (14%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELM----------------------DSQG 182
           Q+G   +  +YN++ + L +    RA D+    +                       S G
Sbjct: 247 QRGIPPDLVTYNSVVHALCKA---RAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTG 303

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           +  E + + ++MRR+   PDV   + ++  L     +     V++ M       DV +Y 
Sbjct: 304 QWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYN 363

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++ G    G +V   +LF  M  +GI  D   + VLI+     G + KA  +  ++ D 
Sbjct: 364 IMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDH 423

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + D+  Y ++I  LCR+ + D A + F   +   +APD    N L+      G +   
Sbjct: 424 GVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKA 483

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
            +L++++  +   +  D+  FF  ++    K  R+M A ++F+     G +    +Y++L
Sbjct: 484 KELISEI--MNNGMHLDI-VFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSML 540

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           M     +G+++KAL +F  M    +E                                  
Sbjct: 541 MDGYCLVGKMEKALRVFDAMVSAGIE---------------------------------- 566

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P+V  Y  L  G CKIG ID  + L R+ L      P+   Y++ I  + ++G      
Sbjct: 567 -PNVVVYCTLVNGYCKIGRIDEGLSLFREMLQR-GIKPSTILYSIIIDGLFQAGRTVPAK 624

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
              +EMT+ G   +    + ++ G+ K+   +EA  +F  LR
Sbjct: 625 VKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELR 666



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 162/344 (47%), Gaps = 13/344 (3%)

Query: 244 LIMGLCKGGRVVRGHE-LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           L+ G C+  R     + L     E G + D   Y +L++ L  +GK G+A DLL+ + + 
Sbjct: 152 LLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 211

Query: 303 GYRADLGI--YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           G      +  YN++I G  +    +KA  LF+  VQ  + PD  T N ++    +   MD
Sbjct: 212 GAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMD 271

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKG-YSSVPIYNI 417
                L QM   +  V  +   +   + G     +   A+ VF+E++       V   ++
Sbjct: 272 KAEAFLRQMVNKR--VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSM 329

Query: 418 LMGALLEIGEVKKALYLFGK--MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           LMG+L + G++K+A  +F    M+G N +V   S++I +  +   G +++  +  + ++ 
Sbjct: 330 LMGSLCKYGKIKEARDVFDTMAMKGQNPDV--FSYNIMLNGYATKGCLVDMTDLFDLMLG 387

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P    +N L K     G +D AM++  + + +    P    Y   I  +CR G+ +
Sbjct: 388 DGIAPDFYTFNVLIKAYANCGMLDKAMIIFNE-MRDHGVKPDVVTYRTVIAALCRIGKMD 446

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             +E  N+M  +G  P++   + +I G C HG+L +A+++ + +
Sbjct: 447 DAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEI 490


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 163/346 (47%), Gaps = 10/346 (2%)

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI--YGVLIEGLVGEGKVGKACD 294
           DV +Y  L+  LC  G+  +  +L R M E G +    +  Y  +I+G   EG V KACD
Sbjct: 184 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACD 243

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           L K++V  G   DL  YNS++  LC+ +  DKA       V   + P+  T N L+   +
Sbjct: 244 LFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYS 303

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS- 410
             G+     ++  +M   + S+  D+      L+G   K  +I  A DVF+ +  KG + 
Sbjct: 304 STGQWKEAVRVFKEMR--RHSILPDVVT-LSMLMGSLCKYGKIKEARDVFDTMAMKGQNP 360

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            V  YNI++      G +     LF  M G  +  +  +F++ I+ +   G + +A    
Sbjct: 361 DVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIF 420

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
           N++ +    P V  Y  +   LC+IG++D AM      + +    P ++ Y   I   C 
Sbjct: 421 NEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYNCLIQGFCT 479

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
            G   K  E+++E+   G   + V  S+II+ +CK G + +A+ +F
Sbjct: 480 HGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIF 525



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/414 (22%), Positives = 198/414 (47%), Gaps = 12/414 (2%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + +M ++ + M  +   PD + +  +I+  A    LD  + ++ EM+   V+ DV+
Sbjct: 374 TKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVV 433

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I  LC+ G++    E F +M + G+  D+  Y  LI+G    G + KA +L+ ++
Sbjct: 434 TYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEI 493

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +++G   D+  ++SII  LC++ +   A  +F++TV   L PD    N L+     +G+M
Sbjct: 494 MNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKM 553

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           +   ++   M  +   +  ++  +   + G  K  RI   L +F E+  +G   S  +Y+
Sbjct: 554 EKALRVFDAM--VSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 611

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           I++  L E G    A   F +M    + ++  +++I ++   ++    EA     ++  M
Sbjct: 612 IIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAM 671

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRSGE 533
           +   ++   N +  G+ +   ++ A    +D   +++     P+   Y++ I ++ + G 
Sbjct: 672 NVKINIITLNTMIDGMFQTRRVEEA----KDLFASISRSRLVPSVVTYSIMITNLIKEGL 727

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
            E+  ++ + M   GC PN  + + ++  + K   +  A    + + ER    E
Sbjct: 728 VEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLE 781



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 111/459 (24%), Positives = 202/459 (44%), Gaps = 52/459 (11%)

Query: 183 RIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAE---RNLDACLRVWEEMKKDLVEADV 238
           R  E L+IL      L C PDVF+Y+ +++ L  +      D  LR+  E    +   +V
Sbjct: 164 RTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAE-GGAVCSPNV 222

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           +AY T+I G  K G V +  +LF+EM + GI  D   Y  ++  L     + KA   L+ 
Sbjct: 223 VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQ 282

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +V+     +   YN++I G     Q+ +A ++F+   +  + PD  T++ L+    + G+
Sbjct: 283 MVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGK 342

Query: 359 MD---NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYS-SV 412
           +    + F  +A   +       D+  +   L G   +  ++   D+F+ + G G +   
Sbjct: 343 IKEARDVFDTMAMKGQ-----NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDF 397

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             +N+L+ A    G + KA+ +F +MR   ++ + +++   I      G + +A E  N+
Sbjct: 398 YTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQ 457

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG---------------------- 510
           +I+    P   AYNCL +G C  G +  A  L+ + +                       
Sbjct: 458 MIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 517

Query: 511 ------------NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
                       NV   P    Y + +   C  G+ EK + V + M   G  PN V    
Sbjct: 518 VMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGT 577

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +++G CK G ++E   +F  + +R +  + +TI+Y  I+
Sbjct: 578 LVNGYCKIGRIDEGLSLFREMLQRGI--KPSTILYSIII 614



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/462 (22%), Positives = 190/462 (41%), Gaps = 68/462 (14%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELM----------------------DSQG 182
           Q+G   +  +YN++ + L +    RA D+    +                       S G
Sbjct: 250 QRGIPPDLVTYNSVVHALCKA---RAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTG 306

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           +  E + + ++MRR+   PDV   + ++  L     +     V++ M       DV +Y 
Sbjct: 307 QWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYN 366

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++ G    G +V   +LF  M  +GI  D   + VLI+     G + KA  +  ++ D 
Sbjct: 367 IMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDH 426

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + D+  Y ++I  LCR+ + D A + F   +   +APD    N L+      G +   
Sbjct: 427 GVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKA 486

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
            +L++++  +   +  D+  FF  ++    K  R+M A ++F+     G +    +YN+L
Sbjct: 487 KELISEI--MNNGMHLDI-VFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNML 543

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           M     +G+++KAL +F  M    +E                                  
Sbjct: 544 MDGYCLVGKMEKALRVFDAMVSAGIE---------------------------------- 569

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P+V  Y  L  G CKIG ID  + L R+ L      P+   Y++ I  +  +G      
Sbjct: 570 -PNVVGYGTLVNGYCKIGRIDEGLSLFREMLQR-GIKPSTILYSIIIDGLFEAGRTVPAK 627

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
              +EMT+ G   +    + ++ G+ K+   +EA  +F  LR
Sbjct: 628 MKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELR 669



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 163/344 (47%), Gaps = 13/344 (3%)

Query: 244 LIMGLCKGGRVVRGHE-LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           L+ G C+  R     + L     E G + D   Y +L++ L  +GK G+A DLL+ + + 
Sbjct: 155 LLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 214

Query: 303 GY--RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           G     ++  YN++I G  +    +KA  LF+  VQ  + PD  T N ++    +   MD
Sbjct: 215 GAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMD 274

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKG-YSSVPIYNI 417
                L QM   +  V  +   +   + G     +   A+ VF+E++       V   ++
Sbjct: 275 KAEAFLRQMVNKR--VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSM 332

Query: 418 LMGALLEIGEVKKALYLFGK--MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           LMG+L + G++K+A  +F    M+G N +V   S++I +  +   G +++  +  + ++ 
Sbjct: 333 LMGSLCKYGKIKEARDVFDTMAMKGQNPDV--FSYNIMLNGYATKGCLVDMTDLFDLMLG 390

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P    +N L K     G +D AM++  + + +    P    Y   I  +CR G+ +
Sbjct: 391 DGIAPDFYTFNVLIKAYANCGMLDKAMIIFNE-MRDHGVKPDVVTYRTVIAALCRIGKMD 449

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             +E  N+M  +G  P++   + +I G C HG+L +A+++ + +
Sbjct: 450 DAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEI 493


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/511 (23%), Positives = 221/511 (43%), Gaps = 53/511 (10%)

Query: 120 DLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD 179
           ++V +VL V N P++AS  F +    KG   N  ++  +   L   N             
Sbjct: 179 NVVLDVLVVGNCPSVASNVF-YDMLSKGVSPNDYTFGLVMKALCMVN------------- 224

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
               +     +L  M ++ C P+   Y  +I  L+    +D  L++ EEM       DV 
Sbjct: 225 ---EVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVN 281

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL---------------- 283
            + T+I G C+  RV+ G +L   M   G   +   YG L+ GL                
Sbjct: 282 TFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKV 341

Query: 284 ---------------VGEGKVGKACDLLKD-LVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
                          V  G++ +A   + D ++++GY  D+  +++++ GLC+   F  A
Sbjct: 342 PGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSA 401

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
            +L          P+ +T   L+    + G+++    +L +M    FS+           
Sbjct: 402 LELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISA 461

Query: 388 VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
           + K  +I  ALD+F E+  KG    +  +N L+  L  + E++ AL L+  M    +  N
Sbjct: 462 LCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIAN 521

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           S++F+  I   +  G+I EA +  N ++          YN L K LCK G ++  + L  
Sbjct: 522 SVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFE 581

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
           + +    + P+     + I   C +G+    +E + +M   G  P+ V  +++I+G+CK 
Sbjct: 582 EMIRKGLT-PSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKR 640

Query: 567 GTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           G ++EA  +F  L+   +  + ++I Y+ ++
Sbjct: 641 GRIQEALNLFEKLQAEGI--QPDSITYNTLI 669



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 137/565 (24%), Positives = 250/565 (44%), Gaps = 67/565 (11%)

Query: 110 ELSKLRR----VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRN 165
           +L +LRR    +TP  + ++L++  +   + + F WAG QKGY H+F+ Y  L   L   
Sbjct: 58  DLKELRRSFNKITPFQLCKLLELPLDVETSMEIFKWAGAQKGYCHSFSVYYLLIDKLGAA 117

Query: 166 NLFRAADQVPELMDSQGRI-AEMLEIL------------EKMRRNL-------CKPDVFA 205
             F+  D++   M  +G +  E L IL            +  R  L       C+P   +
Sbjct: 118 AGFKVIDRLLLQMKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDMKGVYCCEPSFRS 177

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  ++ VL           V+ +M    V  +   +  ++  LC    V     L R+M 
Sbjct: 178 YNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMT 237

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           ++G + +  IY  LI+ L    +V +A  LL+++   G   D+  +N++I G CR+ +  
Sbjct: 238 KHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVL 297

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME--------------- 370
           +  KL +  +     P+  T   L+    +  R+D    LL+++                
Sbjct: 298 EGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFV 357

Query: 371 ---KLKFSVAADLEKF-----------FEFLVG---KEERIMMALDVFEELKGKGYS-SV 412
              +L  + A   +K            F  LV    K+     AL++  ++  KG   ++
Sbjct: 358 RNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNL 417

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             Y IL+    + G++++A  +  +M      +N++ ++  I    + G I EA +   +
Sbjct: 418 NTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGE 477

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-CLGNVASGPTEFKYALTILHV-CR 530
           +      P +  +N L  GLC++ E++ A+ L RD  L  V +    F    T++H   R
Sbjct: 478 MSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFN---TLIHAFLR 534

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            GE ++ ++++N+M   GCP +E+  + +I  +CK G +E+   +F  +  RK LT   +
Sbjct: 535 RGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMI-RKGLTP--S 591

Query: 591 IVYDEILIEHMKKKTADLVLSGLKF 615
           I+   ILI      TA  V + L+F
Sbjct: 592 IITCNILINGF--CTAGKVHNALEF 614



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 158/391 (40%), Gaps = 36/391 (9%)

Query: 181 QGRIAEMLE-ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
            GR+ E    + +KM  N   PDVF ++ ++  L  +    + L +  +M     + ++ 
Sbjct: 359 NGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLN 418

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI G CK G++     + REM   G  ++   Y  LI  L   GK+ +A D+  ++
Sbjct: 419 TYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEM 478

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G + D+  +NS+I GLCRV + + A  L+   V + +  +  T N L+      G +
Sbjct: 479 SSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEI 538

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
               KL+  M                                   +G     +  YN L+
Sbjct: 539 QEALKLVNDML---------------------------------FRGCPLDEIT-YNGLI 564

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            AL + G V+K L LF +M    L  + ++ +I I     +G +  A E    +I     
Sbjct: 565 KALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFS 624

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P +  YN L  GLCK G I  A+ L    L      P    Y   I  +CR G  +    
Sbjct: 625 PDIVTYNSLINGLCKRGRIQEALNLFEK-LQAEGIQPDSITYNTLICWLCREGAFDDACF 683

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
           +L    + G  PN+V  + ++    K    E
Sbjct: 684 LLYRGVENGFVPNDVTWNILVYNFGKQSNSE 714



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 138/323 (42%), Gaps = 24/323 (7%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG------------ 182
           A+ F +      GY  +  +++ L   L +  LF +A ++   MD++G            
Sbjct: 365 ATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILI 424

Query: 183 -------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
                  ++ E   IL +M       +   Y A+I  L     +   L ++ EM     +
Sbjct: 425 DGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCK 484

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            D+  + +LI GLC+   +     L+R+M   G++ +   +  LI   +  G++ +A  L
Sbjct: 485 PDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKL 544

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
           + D++  G   D   YN +I  LC+    +K   LFE  ++  L P   T N L+     
Sbjct: 545 VNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCT 604

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP 413
            G++ N  + +  M    FS   D+  +   + G  K  RI  AL++FE+L+ +G     
Sbjct: 605 AGKVHNALEFMRDMIHRGFS--PDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDS 662

Query: 414 I-YNILMGALLEIGEVKKALYLF 435
           I YN L+  L   G    A +L 
Sbjct: 663 ITYNTLICWLCREGAFDDACFLL 685



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 103/452 (22%), Positives = 198/452 (43%), Gaps = 40/452 (8%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRV-LAAERNLDACLRVWEEMKKDLVEADVMAYVTLI-MGL 248
           L+++RR+  K   F    ++ + L  E +++  +  W   +K    +  + Y+ +  +G 
Sbjct: 59  LKELRRSFNKITPFQLCKLLELPLDVETSME--IFKWAGAQKGYCHSFSVYYLLIDKLGA 116

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL-----VDSG 303
             G +V+    L  +MKE GI+   +++ ++++     G  G+A  LL D+      +  
Sbjct: 117 AAGFKVI--DRLLLQMKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDMKGVYCCEPS 174

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
           +R+    YN ++  L        A  +F   +   ++P+  T   ++     +  +DN  
Sbjct: 175 FRS----YNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNAC 230

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGAL 422
            LL  M K      + + +     + K +R+  AL + EE+   G    V  +N ++   
Sbjct: 231 LLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGF 290

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
             +  V +   L  +M       N +++   +    ++  I EA    +K+      P+V
Sbjct: 291 CRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKV----PGPNV 346

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             +N L  G  + G ++ A   V D + N    P  F ++  +  +C+ G     +E++N
Sbjct: 347 VHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVN 406

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIVYDEI--- 596
           +M  +GC PN    + +I G CK G LEEA  +      R++LT+    NT+ Y+ +   
Sbjct: 407 DMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLIL-----REMLTKGFSLNTVGYNALISA 461

Query: 597 LIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
           L +H K   A      L  FG   ++ +KGCK
Sbjct: 462 LCKHGKIHEA------LDMFG---EMSSKGCK 484


>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
          Length = 601

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 194/433 (44%), Gaps = 16/433 (3%)

Query: 150 HNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAM 209
           H  A  NA++Y +    L            +  R  E + +L  M+ +  + DV  Y  +
Sbjct: 108 HPAARPNAVSYTMVMRGLC-----------ASRRTDEAVALLRSMQASGVRADVVTYGTL 156

Query: 210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
           IR L     LD  L +  EM    V  +V+ Y  L+ G C+ GR     ++F EM   G+
Sbjct: 157 IRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGV 216

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
             D  ++   I+ L  +G++GKA  +   +V  G   ++  YN +I  LC+     +A  
Sbjct: 217 EPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALA 276

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG 389
           L        +APD  T N L+   + +  MD    LL +M +    V  D+  F   + G
Sbjct: 277 LRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHG 336

Query: 390 --KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
             K  R+  A+ V E +  +G   ++  YN L+G  L + +V  A+ L  ++    LE +
Sbjct: 337 LCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLEPD 396

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           S ++SI I    +  ++  A      + +      +  Y  L   LC++G ++ AM+L  
Sbjct: 397 SFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFN 456

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
           +   ++  G     Y+  +   C+SG+ +   ++L +M  EG  P+ V  S +I+   K 
Sbjct: 457 EM--DMNCGLDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDAVTYSILINMFAKL 514

Query: 567 GTLEEARKVFTNL 579
           G LEEA +V   +
Sbjct: 515 GDLEEAERVLKQM 527



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 155/375 (41%), Gaps = 54/375 (14%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+G + N  +YN L  CL +    R A  +   MD +G                  PDV 
Sbjct: 248 QRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKG----------------VAPDVV 291

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKK--DLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
            Y  +I  L+    +D  + + EEM +   LVE DV+ + ++I GLCK GR+ +   +  
Sbjct: 292 TYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAISVRE 351

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            M E G + +   Y  LI G +   KV  A +L+ +L+ SG   D   Y+ +I G  ++ 
Sbjct: 352 MMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYSILINGFSKLW 411

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           + D+A        Q  +  +     PLL    ++G M+    L  +M+            
Sbjct: 412 EVDRAEMFLRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNEMDM----------- 460

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                                    G  +V  Y+ +M    + G++K A  L   M    
Sbjct: 461 -----------------------NCGLDAVA-YSTMMYGACKSGDIKAAKQLLQDMLDEG 496

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           L  +++++SI I    + GD+ EA     ++     VP VA ++ L KG    G+I+  +
Sbjct: 497 LAPDAVTYSILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKGYSAEGQINKIL 556

Query: 503 MLVRDCLG-NVASGP 516
            L+ +    NVA  P
Sbjct: 557 DLIHEMRAKNVAIDP 571



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 8/168 (4%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           AEM   L  M +   + ++F Y  ++  L     ++  + ++ EM  +    D +AY T+
Sbjct: 416 AEMF--LRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNEMDMN-CGLDAVAYSTM 472

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + G CK G +    +L ++M + G+  D   Y +LI      G + +A  +LK +  SG+
Sbjct: 473 MYGACKSGDIKAAKQLLQDMLDEGLAPDAVTYSILINMFAKLGDLEEAERVLKQMAASGF 532

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
             D+ +++S+I G     Q +K   L       ++A     ++P  +C
Sbjct: 533 VPDVAVFDSLIKGYSAEGQINKILDLIHEMRAKNVA-----IDPKFIC 575


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 177/383 (46%), Gaps = 8/383 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G +++  E+L +M      P+VF YT +I       ++D    ++  M    + A+   
Sbjct: 120 NGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYI 179

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G  K G    G EL+++MK  G+L +   Y  LI     +GK+  A  +  ++ 
Sbjct: 180 YTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEIS 239

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   +   YN +IGGLCR  Q  KA  L E   +  + P   T N L+      G++D
Sbjct: 240 KRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLD 299

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI---MMALDVFEELKGKGYS-SVPIYN 416
              K L+ +EKLK          +  L+    ++    +  ++  E++ +G S S   Y 
Sbjct: 300 ---KALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYT 356

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           ILM   +   +++KA  +F  M+ + L  +  ++ + I      G+++EA + +  ++EM
Sbjct: 357 ILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEM 416

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P+   YN +  G CK      A+  + + + N  + P    Y  TI  +C+ G++ +
Sbjct: 417 HLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVT-PNVASYISTIQILCKDGKSIE 475

Query: 537 IIEVLNEMTQEGCPPNEVICSAI 559
              +L EMT+ G  P E +CS +
Sbjct: 476 AKRLLKEMTEAGLKPPESLCSKV 498



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 137/309 (44%), Gaps = 36/309 (11%)

Query: 88  IARFITDAFRKNQFQWGPQVVTELSKLRRVTPDL------VAEVLKVENNPTLASKFFHW 141
           I  F    ++K+ F+   ++     KL  V P+L      + E  + +   +LA K F  
Sbjct: 184 INGFFKKGYKKDGFELYQKM-----KLVGVLPNLYTYNSLITEYCR-DGKLSLAFKVFDE 237

Query: 142 AGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE----------------LMD---SQG 182
             K +G   N  +YN L   L R      A+ + E                LMD   + G
Sbjct: 238 ISK-RGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTG 296

Query: 183 RIAEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           ++ + L  LEK++   LC P +  Y  +I   +   N      +  EM+   +    + Y
Sbjct: 297 QLDKALSYLEKLKLIGLC-PTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTY 355

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+    +   + + +E+F  MK  G++ D+  YGVLI GL  +G + +A  L K +V+
Sbjct: 356 TILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVE 415

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF-STVNPLLVCCAEMGRMD 360
              + +  IYN++I G C+     KA K  E  V++ + P+  S ++ + + C + G+  
Sbjct: 416 MHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKD-GKSI 474

Query: 361 NFFKLLAQM 369
              +LL +M
Sbjct: 475 EAKRLLKEM 483


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 172/395 (43%), Gaps = 35/395 (8%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           KP V +Y+ +I  L  +R  D    ++EEMK   +   V++Y +LI G C GG+      
Sbjct: 239 KPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKR 298

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           LF EM   G+  +   + VLI+ L  EGKV +A DLL+ ++  G   +L  YNS+I G C
Sbjct: 299 LFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFC 358

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
            V   + A +LF         PD      L+    +  +++   KL   M +        
Sbjct: 359 LVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQ-------- 410

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
                   VGK                     V  Y  L+  L + G+V  A  LFG M+
Sbjct: 411 --------VGKR------------------PDVKTYGALLTGLFQGGKVGDAKKLFGVMK 444

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              +  +   + I +    ++G + EA E  NK+   +    +  +NCL  GLCK G+++
Sbjct: 445 VYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLE 504

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A  L    L      P    Y + I   CR G+  K   +  +M + GC P+++  + +
Sbjct: 505 TAWELFEK-LPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATL 563

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           I G  +   LE+  ++   + +R +  + N + ++
Sbjct: 564 IRGFFESKKLEKVVELLHMMVQRDVSLDVNILRHN 598



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 157/364 (43%), Gaps = 35/364 (9%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  E  ++ E+M+     P V +YT++I         +   R++ EM    V+ +V+ + 
Sbjct: 257 REDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFN 316

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI  LCK G+V+   +L   M + GI+ +   Y  LIEG    G +  A +L   +   
Sbjct: 317 VLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSK 376

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D+  Y  +I G C+  + ++A KL+   +Q    PD  T   LL    + G++ + 
Sbjct: 377 GCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDA 436

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422
            KL   M+   + +  DL                                 IY I +  L
Sbjct: 437 KKLFGVMK--VYGIPGDLY--------------------------------IYGIFLNGL 462

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            + G + +A+ LF K++  N++++   F+  I    ++G +  A E   K+ +    P V
Sbjct: 463 CKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDV 522

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             YN +    C+ G++  A +L +    N    P +  YA  I     S + EK++E+L+
Sbjct: 523 VTYNIMIHEFCRGGQVVKANILFQKMEKN-GCTPDKITYATLIRGFFESKKLEKVVELLH 581

Query: 543 EMTQ 546
            M Q
Sbjct: 582 MMVQ 585



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 96/432 (22%), Positives = 199/432 (46%), Gaps = 30/432 (6%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           +++  +  +MR +   PD      ++  L     +   L V   + +     D++ Y TL
Sbjct: 113 SQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTL 172

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG- 303
           I GLC   R+ +   LF  M++ G   +   YG L++GL   G +  A  L +++++   
Sbjct: 173 IKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSS 232

Query: 304 -----YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEM 356
                ++  +  Y+ II  LC+ ++ D+A  LFE      + P   +   L+   CC   
Sbjct: 233 LYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCG-- 290

Query: 357 GRMDNFFKLLAQM-------EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG- 408
           G+ +   +L  +M         + F+V  D       ++ KE +++ A D+ E +  +G 
Sbjct: 291 GKWEEAKRLFNEMVNQGVQPNVVTFNVLID-------VLCKEGKVIEAKDLLEVMIQRGI 343

Query: 409 YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
             ++  YN L+     +G++  A  LF  M     E + + +++ I  + ++  + EA +
Sbjct: 344 VPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMK 403

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE-FKYALTILH 527
            +N ++++ + P V  Y  L  GL + G++  A  L    +  V   P + + Y + +  
Sbjct: 404 LYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFG--VMKVYGIPGDLYIYGIFLNG 461

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           +C++G   + +E+ N++       +    + +I G+CK G LE A ++F  L + +L  +
Sbjct: 462 LCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEEL--Q 519

Query: 588 ANTIVYDEILIE 599
            + + Y+ ++ E
Sbjct: 520 PDVVTYNIMIHE 531



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 170/377 (45%), Gaps = 31/377 (8%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P + ++T ++  LA  ++      ++ +M+   +  D      L+  LC   RV  G  +
Sbjct: 94  PPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAV 153

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              +   G + D   Y  LI+GL  E ++ KA  L   +   G   +   Y +++ GLCR
Sbjct: 154 MAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCR 213

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
                 A KL +  + D        +N               FK +     + +S+  D 
Sbjct: 214 TGNISIALKLHQEMLNDS---SLYGIN---------------FKPVV----ISYSIIID- 250

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMR 439
                  + K+ R   A D+FEE+K +G +   I Y  L+      G+ ++A  LF +M 
Sbjct: 251 ------ALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMV 304

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              ++ N ++F++ I    + G ++EA +    +I+   VP++  YN L +G C +G+++
Sbjct: 305 NQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLN 364

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           +A  L    + +    P    Y + I   C++ + E+ +++ N M Q G  P+     A+
Sbjct: 365 SARELFVS-MPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGAL 423

Query: 560 ISGMCKHGTLEEARKVF 576
           ++G+ + G + +A+K+F
Sbjct: 424 LTGLFQGGKVGDAKKLF 440



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 118/265 (44%), Gaps = 24/265 (9%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEML---------------- 188
            +G + N  ++N L   L +      A  + E+M  +G +  +L                
Sbjct: 305 NQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLN 364

Query: 189 ---EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
              E+   M    C+PDV  YT +I        ++  ++++  M +     DV  Y  L+
Sbjct: 365 SARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALL 424

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GL +GG+V    +LF  MK  GI  D  IYG+ + GL   G + +A +L   L     +
Sbjct: 425 TGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIK 484

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  +N +I GLC+  + + A++LFE   Q++L PD  T N ++      G++     L
Sbjct: 485 LDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANIL 544

Query: 366 LAQMEKL-----KFSVAADLEKFFE 385
             +MEK      K + A  +  FFE
Sbjct: 545 FQKMEKNGCTPDKITYATLIRGFFE 569



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 131/298 (43%), Gaps = 7/298 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  E   +  +M     +P+V  +  +I VL  E  +     + E M +  +  +++ Y
Sbjct: 291 GKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTY 350

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI G C  G +    ELF  M   G   D   Y VLI G     KV +A  L   ++ 
Sbjct: 351 NSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQ 410

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G R D+  Y +++ GL +  +   A KLF V     +  D       L    + G +  
Sbjct: 411 VGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCL-- 468

Query: 362 FFKLLAQMEKLK-FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
            F+ +    KLK +++  D+E F   + G  K  ++  A ++FE+L  +     V  YNI
Sbjct: 469 -FEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNI 527

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           ++      G+V KA  LF KM       + ++++  I+   ES  + +  E  + +++
Sbjct: 528 MIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQ 585



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 113/257 (43%), Gaps = 23/257 (8%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQG-------------------R 183
           Q+G   N  +YN+L   +CL  +    +A ++   M S+G                   +
Sbjct: 340 QRGIVPNLLTYNSLIEGFCLVGD--LNSARELFVSMPSKGCEPDVICYTVLINGYCKTSK 397

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + E +++   M +   +PDV  Y A++  L     +    +++  MK   +  D+  Y  
Sbjct: 398 VEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGI 457

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
            + GLCK G +    ELF ++K   I +D   +  LI+GL   GK+  A +L + L    
Sbjct: 458 FLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEE 517

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            + D+  YN +I   CR  Q  KA  LF+   ++   PD  T   L+    E  +++   
Sbjct: 518 LQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVV 577

Query: 364 KLLAQMEKLKFSVAADL 380
           +LL  M +   S+  ++
Sbjct: 578 ELLHMMVQRDVSLDVNI 594


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 194/420 (46%), Gaps = 9/420 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R++E L++LE M    C+PDV  +  +I  L     +    ++ + M       D + Y 
Sbjct: 255 RVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYG 314

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL-KDLVD 301
            L+ GLC+ G+V     L  ++       +  +Y  LI G V  G+  +A DLL  ++V 
Sbjct: 315 YLMHGLCRMGQVDEARALLNKIPNP----NTVLYNTLISGYVASGRFEEAKDLLYNNMVI 370

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +GY  D   +N +I GL +      A +L    V     P+  T   L+    + GR++ 
Sbjct: 371 AGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEE 430

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
             +++  M     S+           + K+  I  AL +F E+ GKG    +  +N L+ 
Sbjct: 431 AAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLIN 490

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L +  ++++AL L+  M    +  N+++++  +   +    I +A +  ++++      
Sbjct: 491 GLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPL 550

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
               YN L K LCK G ++  + L  + LG     PT     + I  +CR+G+    ++ 
Sbjct: 551 DNITYNGLIKALCKTGAVEKGLGLFEEMLGK-GIFPTIISCNILISGLCRTGKVNDALKF 609

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           L +M   G  P+ V  +++I+G+CK G ++EA  +F  L+   +  +A  I Y+ ++  H
Sbjct: 610 LQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDA--ITYNTLISRH 667



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 123/547 (22%), Positives = 229/547 (41%), Gaps = 74/547 (13%)

Query: 110 ELSKLRR------VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLS 163
           +L +LRR      ++P  + ++L++  +   + + F  AG QKGY H F +   L   L 
Sbjct: 51  DLKQLRRSLSLTPISPFQLCKLLELPLDIPTSMELFQRAGAQKGYSHTFDACYLLIDKLG 110

Query: 164 RNNLFRAADQVPELMDSQGRI-AEMLEIL------------EKMRRNL-------CKPDV 203
               F+  +++ + M  +G +  E L IL            +  R  L       C P  
Sbjct: 111 AVGDFKVIEKLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTF 170

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            +Y  ++ +L           V+ +M    V   V  +  ++  LC    V     L R+
Sbjct: 171 KSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRD 230

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M ++G + +  IY  LI  L    +V +A  LL+D+       D+  +N +I GLCR  +
Sbjct: 231 MAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGR 290

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
             +A KL +  +    + D  T   L+     MG++D    LL ++              
Sbjct: 291 IHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPN------------ 338

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKAL-YLFGKMRGLN 442
                                      +  +YN L+   +  G  ++A   L+  M    
Sbjct: 339 --------------------------PNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAG 372

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
            E ++ +F+I I   V+ G ++ A E  N+++     P+V  Y  L  G CK G ++ A 
Sbjct: 373 YEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAA 432

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            +V        S  T   Y   I  +C+ G  E+ +++  EM+ +GC P+    +++I+G
Sbjct: 433 EIVNSMSAKGLSLNT-VGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLING 491

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKL 622
           +CK+  +EEA  ++ ++    ++  ANT+ Y+ ++   + + +        + F L  ++
Sbjct: 492 LCKNHKMEEALSLYHDMFLEGVI--ANTVTYNTLVHAFLMRDSIQ------QAFKLVDEM 543

Query: 623 KAKGCKL 629
             +GC L
Sbjct: 544 LFRGCPL 550



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 160/388 (41%), Gaps = 38/388 (9%)

Query: 180 SQGRIAEMLEIL-EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           + GR  E  ++L   M     +PD + +  MI  L  +  L + L +  EM     E +V
Sbjct: 353 ASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNV 412

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + Y  LI G CK GR+    E+   M   G+ ++   Y  LI  L  +G + +A  L  +
Sbjct: 413 ITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGE 472

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +   G + D+  +NS+I GLC+  + ++A  L+     + +  +  T N L+        
Sbjct: 473 MSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLV-------- 524

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNI 417
                                      FL+   + I  A  + +E+  +G     I YN 
Sbjct: 525 -------------------------HAFLM--RDSIQQAFKLVDEMLFRGCPLDNITYNG 557

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ AL + G V+K L LF +M G  +    +S +I I     +G + +A +    +I   
Sbjct: 558 LIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRG 617

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P +  YN L  GLCK+G +  A  L    L +    P    Y   I   C  G     
Sbjct: 618 LTPDIVTYNSLINGLCKMGHVQEASNLFNK-LQSEGIRPDAITYNTLISRHCHEGMFNDA 676

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCK 565
             +L +    G  PNEV  S +I+ + K
Sbjct: 677 CLLLYKGVDSGFIPNEVTWSILINYIVK 704



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 96/240 (40%), Gaps = 51/240 (21%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           KG   N   YN L   L ++                G I E L++  +M    CKPD++ 
Sbjct: 441 KGLSLNTVGYNCLICALCKD----------------GNIEEALQLFGEMSGKGCKPDIYT 484

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT---------------------- 243
           + ++I  L     ++  L ++ +M  + V A+ + Y T                      
Sbjct: 485 FNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEML 544

Query: 244 -------------LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
                        LI  LCK G V +G  LF EM   GI        +LI GL   GKV 
Sbjct: 545 FRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVN 604

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            A   L+D++  G   D+  YNS+I GLC++    +A  LF     + + PD  T N L+
Sbjct: 605 DALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLI 664


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/436 (22%), Positives = 203/436 (46%), Gaps = 37/436 (8%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG + E L +L  +    C+PDV +Y A+++ L   +       + EEM +     +++ 
Sbjct: 205 QGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVT 264

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + TLI  LC+ G   R HE+  +M E+G   D  +Y  +I+G+  EG +  A ++L  + 
Sbjct: 265 FNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMP 324

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + ++  YN+++ GLC  +++++  +L       D   D  T N L+    + G +D
Sbjct: 325 SYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVD 384

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
              +LL QM                                  L+      V  Y  ++ 
Sbjct: 385 RVIELLEQM----------------------------------LERGCMPDVITYTTVIN 410

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G + +A+ L   M     + N++S++I ++    +   ++A +  +++I+     
Sbjct: 411 GFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPL 470

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +   +N L   LCK G ++ A+ L++  L N  S P    Y+  I  + ++G+ ++ +E+
Sbjct: 471 NPITFNTLINFLCKKGLVEQAIELLKQMLVNGCS-PDLISYSTVIDGLGKAGKTDEALEL 529

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           LN M  +G  PN +I S+I S + + G + +  ++F N+++  + ++A  ++Y+ ++   
Sbjct: 530 LNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDA--VLYNAVISSL 587

Query: 601 MKKKTADLVLSGLKFF 616
            K+   +  +  L + 
Sbjct: 588 CKRGETERAIEFLAYM 603



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/403 (21%), Positives = 175/403 (43%), Gaps = 41/403 (10%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++GRIA+ L +L++M R  C P    Y  ++                             
Sbjct: 134 ARGRIADALAVLDEMPRRGCAPIPPMYHVILE---------------------------- 165

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
                    C+GG       +  ++   G  +D     +++  +  +G V +A  LL+DL
Sbjct: 166 -------AACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDL 218

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   D+  YN+++ GLC  K++    +L E  V+    P+  T N L+      G  
Sbjct: 219 PSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLF 278

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           +   ++LAQM  ++     D+  +   + G  KE  + +A ++   +   G   +V  YN
Sbjct: 279 ERVHEVLAQM--VEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYN 336

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  L      ++   L  +M   +  ++ ++F+I +    ++G +    E   +++E 
Sbjct: 337 TLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLER 396

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
             +P V  Y  +  G CK G ID A+ML++  +      P    Y + +  +C +     
Sbjct: 397 GCMPDVITYTTVINGFCKEGLIDEAVMLLKS-MTACGCKPNTISYTIVLKGLCSAERWVD 455

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             +++++M Q+GCP N +  + +I+ +CK G +E+A ++   +
Sbjct: 456 AEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQM 498



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 124/290 (42%), Gaps = 46/290 (15%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           YN+++ G CR  Q + A +L        + P+  T  P++      GR+ +         
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCARGRIAD--------- 140

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSV-PIYNILMGALLEIGEVK 429
                                     AL V +E+  +G + + P+Y++++ A    G  +
Sbjct: 141 --------------------------ALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFR 174

Query: 430 KALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
            A+ +   +  RG  L+V + +  +   C  + G + EA      +      P V +YN 
Sbjct: 175 SAVRVLEDLHARGCALDVGNCNLVLNAIC--DQGSVDEALHLLRDLPSFGCEPDVVSYNA 232

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           + KGLC          L+ + +  +A  P    +   I ++CR+G  E++ EVL +M + 
Sbjct: 233 VLKGLCMAKRWGCVQELMEE-MVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEH 291

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           GC P+  + + II G+CK G LE A ++   +    L  + N + Y+ +L
Sbjct: 292 GCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGL--KPNVVCYNTLL 339



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 133/323 (41%), Gaps = 17/323 (5%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G K N   YN L   L                 S  R  E  E+L +M    C  D   +
Sbjct: 327 GLKPNVVCYNTLLKGLC----------------SAERWEETEELLAEMFDKDCPLDDVTF 370

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             ++        +D  + + E+M +     DV+ Y T+I G CK G +     L + M  
Sbjct: 371 NILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTA 430

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G   +   Y ++++GL    +   A DL+  ++  G   +   +N++I  LC+    ++
Sbjct: 431 CGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQ 490

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A +L +  + +  +PD  + + ++    + G+ D   +LL  M     S    +      
Sbjct: 491 AIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIAS 550

Query: 387 LVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
            + +E RI   + +F+ ++     S   +YN ++ +L + GE ++A+     M       
Sbjct: 551 ALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVP 610

Query: 446 NSLSFSIAIQCHVESGDILEACE 468
           N  +++I I+     G + EA E
Sbjct: 611 NESTYTILIRGLASEGFVKEAQE 633



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 35/224 (15%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL-AAERNLDA------------------ 221
           +G I E + +L+ M    CKP+  +YT +++ L +AER +DA                  
Sbjct: 415 EGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPIT 474

Query: 222 ----------------CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
                            + + ++M  +    D+++Y T+I GL K G+     EL   M 
Sbjct: 475 FNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMV 534

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
             G+  +  IY  +   L  EG++ K   +  ++ D+  R+D  +YN++I  LC+  + +
Sbjct: 535 NKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETE 594

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
           +A +     V     P+ ST   L+   A  G +    ++L ++
Sbjct: 595 RAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTEL 638



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 19/178 (10%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQV----------PELMD---------SQGRIA 185
           Q+G   N  ++N L   L +  L   A ++          P+L+            G+  
Sbjct: 465 QQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTD 524

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E LE+L  M      P+   Y+++   L+ E  ++  +++++ ++   + +D + Y  +I
Sbjct: 525 EALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVI 584

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
             LCK G   R  E    M  +G + + + Y +LI GL  EG V +A ++L +L   G
Sbjct: 585 SSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 642


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 196/421 (46%), Gaps = 8/421 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVM 239
           Q R+   L++L++M R+  +PDV  Y A++         +  +RVW+++ KD     ++ 
Sbjct: 206 QDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLA 265

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  ++ GLCK GR     E++  M  N +  D   YG+LI GL   G V  A  +  ++
Sbjct: 266 TYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEI 325

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           + +G   D  +YNS++ G C+  +  +A+K ++      L  +  T N ++    + G +
Sbjct: 326 IKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMV 384

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           D   +L   +EK   +   D   F   + G  +      A  +FEE +  G    V  Y+
Sbjct: 385 DEAIELWDLLEK-DVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYS 443

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++  L  +G +  A+ ++ KM     + NS  ++  I    +     +A   ++K+ + 
Sbjct: 444 SMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADN 503

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P+V  YN L  GLCK  +   A  + R+ + N    P    Y   I  +    + + 
Sbjct: 504 GCSPTVITYNTLIDGLCKAEKYQEASSVAREMVEN-GFTPDITTYGSLIRGLFSDKKIDD 562

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
            + +  ++  +G   + ++ + +I G+C  G ++EA  VF++++E+K     N + Y+ +
Sbjct: 563 ALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKK-NCPPNLVTYNTL 621

Query: 597 L 597
           +
Sbjct: 622 M 622



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 151/325 (46%), Gaps = 4/325 (1%)

Query: 177 LMDSQGRIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           L DS G + E +E+ + + +++ C PD   +  +I  L      +    ++EE +    +
Sbjct: 378 LFDS-GMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQ 436

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            DV +Y ++I GLC  GR+V   +++ +M ++G   +  IY  LI G     +   A  +
Sbjct: 437 LDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRI 496

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
              + D+G    +  YN++I GLC+ +++ +A  +    V++   PD +T   L+     
Sbjct: 497 YSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFS 556

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY--SSVP 413
             ++D+   +  Q+      V   +       +    ++  AL VF ++K K     ++ 
Sbjct: 557 DKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLV 616

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN LM  L E G + KA  L+  +    LE + +S++  I+       I E  +  +++
Sbjct: 617 TYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEV 676

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEI 498
           +    +P+V  +N L + + K G I
Sbjct: 677 LSRGIIPTVITWNILVRAVIKYGPI 701



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 105/461 (22%), Positives = 185/461 (40%), Gaps = 89/461 (19%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K  G + N A+YN +   L +                 GR  E+ E+ E+M  N  +PDV
Sbjct: 256 KDPGARPNLATYNVMLDGLCK----------------FGRFKEVGEVWERMVANNLQPDV 299

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF-- 261
             Y  +I  L    ++D   RV+ E+ K  +  D   Y +L+ G C+ GRV    + +  
Sbjct: 300 ITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDS 359

Query: 262 ------REMKENGILI---------------------------DRAIYGVLIEGLVGEGK 288
                 R ++   I+I                           D   +G LI GL   G 
Sbjct: 360 AGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGF 419

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
             KA  + ++   SG + D+  Y+S+I GLC V +   A K++E   +D   P+    N 
Sbjct: 420 ANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNA 479

Query: 349 LLVCCAEMGRMDNFFKLLAQM---------------------------------EKLKFS 375
           L+    ++ R  +  ++ ++M                                 E ++  
Sbjct: 480 LISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENG 539

Query: 376 VAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
              D+  +   + G   +++I  AL +++++  KG    V ++NIL+  L   G+V +AL
Sbjct: 540 FTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEAL 599

Query: 433 YLFGKMR-GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
           ++F  M+   N   N ++++  +    E+G I +A      I E    P + +YN   KG
Sbjct: 600 HVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKG 659

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           LC    I   + L+ + L      PT   + + +  V + G
Sbjct: 660 LCSCDRIHEGIQLLDEVLSR-GIIPTVITWNILVRAVIKYG 699



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 181/393 (46%), Gaps = 15/393 (3%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL----VEADVMAYVTLIMGLCKGGRV 254
           C P + ++ A++      R        +  +        +  ++  Y  ++  LC  G +
Sbjct: 115 CNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDL 174

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
            R   LF  ++   +  D   Y  L+ GL  + ++  A DLL ++  SG + D+  YN++
Sbjct: 175 DRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNAL 234

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLA-PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           +GG  +  +F+K  ++++  V+D  A P+ +T N +L    + GR     ++  +M  + 
Sbjct: 235 LGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERM--VA 292

Query: 374 FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKK 430
            ++  D+  +   + G  +   +  A  V+ E+   G      +YN L+    + G V++
Sbjct: 293 NNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQE 352

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI-IEMSQVPSVAAYNCLT 489
           A + F    G     N  +++I I+   +SG + EA E  + +  +++ +P    +  L 
Sbjct: 353 A-WKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLI 411

Query: 490 KGLCKIGEIDAAMMLVRDCLGNVASGPTE-FKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
            GLC+ G  + A  +  +    V+    + F Y+  I  +C  G     ++V  +M ++G
Sbjct: 412 HGLCQNGFANKAFTIFEE--ARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDG 469

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           C PN  I +A+ISG C+     +A ++++ + +
Sbjct: 470 CKPNSHIYNALISGFCQVYRTSDAVRIYSKMAD 502



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 125/252 (49%), Gaps = 6/252 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + +++ EKM ++ CKP+   Y A+I            +R++ +M  +     V+ Y
Sbjct: 453 GRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITY 512

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI GLCK  +      + REM ENG   D   YG LI GL  + K+  A  + K ++ 
Sbjct: 513 NTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILY 572

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            G + D+ ++N +I GLC   + D+A  +F ++  + +  P+  T N L+    E G +D
Sbjct: 573 KGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYID 632

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
               L   +   +  +  D+  +   + G    +RI   + + +E+  +G   +V  +NI
Sbjct: 633 KAATLWTSIT--EDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNI 690

Query: 418 LMGALLEIGEVK 429
           L+ A+++ G ++
Sbjct: 691 LVRAVIKYGPIQ 702


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 118/467 (25%), Positives = 202/467 (43%), Gaps = 44/467 (9%)

Query: 125 VLKVENNPTLASKFFHWAGKQKGYKHNFASYNALA-YC-LSRNNLFRAADQVPELMDSQG 182
           +L+ E  P L    F +     GY  N     A   +C + R N     + +  L ++ G
Sbjct: 215 ILRCEPGPDL----FTYTSLVLGYCRNDDVERACGVFCVMPRRNAVSYTNLIHGLCEA-G 269

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA-AERNLDACLRVWEEMKKDLVEADVMAY 241
           ++ E LE   +MR + C P V  YT ++  L  + R L+A L ++ EM++   E +V  Y
Sbjct: 270 KLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEA-LSLFGEMRERGCEPNVYTY 328

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI  LCK GR+    ++  EM E G+      +  LI      G +  A  +L  +  
Sbjct: 329 TVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMES 388

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                ++  YN +I G CR K  D+A  L    V+  L+PD  T N L+    E+G +D+
Sbjct: 389 KKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDS 448

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
             +L   M +  FS   D   F  F+V                                 
Sbjct: 449 ASRLFRLMIRDGFS--PDQWTFNAFMV--------------------------------C 474

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L  +G V +A  +   ++  +++ N  +++  I  + ++G I  A     +++    +P+
Sbjct: 475 LCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPN 534

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
              +N +  GL K G++  AM+LV D +      PT   Y + +  V +  + ++  E+L
Sbjct: 535 SITFNVMIDGLRKEGKVQDAMLLVED-MAKFDVKPTLHTYNILVEEVLKEYDFDRANEIL 593

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           N +   G  PN V  +A I   C  G LEEA ++   ++   +L ++
Sbjct: 594 NRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDS 640



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 183/401 (45%), Gaps = 10/401 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GR  E L +  +MR   C+P+V+ YT +I  L  E  +D  L++  EM +  V   V+ 
Sbjct: 303 SGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVP 362

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  LI   CK G +     +   M+   +  +   Y  LI G      + +A  LL  +V
Sbjct: 363 FNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMV 422

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +S    D+  YN++I GLC V   D A +LF + ++D  +PD  T N  +VC   MGR+ 
Sbjct: 423 ESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVG 482

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE-LKGKGYSSVPIYNI 417
              ++L  +++    V A+   +   + G  K  +I  A  +F+  L  +   +   +N+
Sbjct: 483 EAHQILESLKEKH--VKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNV 540

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++  L + G+V+ A+ L   M   +++    +++I ++  ++  D   A E  N++I   
Sbjct: 541 MIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSG 600

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P+V  Y    K  C  G ++ A  +V   + N       F Y L I      G  +  
Sbjct: 601 YQPNVVTYTAFIKAYCSQGRLEEAEEMVIK-IKNEGVLLDSFIYNLLINAYGCMGLLDSA 659

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
             VL  M   GC P+ +  S ++    KH  +E+ +K  +N
Sbjct: 660 FGVLRRMFGTGCEPSYLTYSILM----KHLVIEKHKKEGSN 696



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 128/563 (22%), Positives = 239/563 (42%), Gaps = 50/563 (8%)

Query: 74  SDPKTFQLQRHLSPIARF-------ITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVL 126
           S+P  F L  H  P +         I     + +++  P + T +  L   TP L+  + 
Sbjct: 4   SEPLFFSLLLHRKPFSSSSSSLPTQIFTILSRPRWRKDPSLKTLIPSL---TPSLLCSLF 60

Query: 127 KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM----DSQG 182
            +  +P  A  FF W  +   + H+ A++++L   L R+   RAA+ V   M     S  
Sbjct: 61  NLNPDPLTALNFFRWIRRHHNFPHSLATHHSLLLLLVRHRTLRAAENVRNSMIKSCTSPH 120

Query: 183 RIAEMLEILEKMRRNLCKPD----------VFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
               +L +L +M       D          + +Y  ++  L+    +D  + +++EM  D
Sbjct: 121 DATFLLNLLRRMNTAAAAADHQHQLAFKLSLTSYNRLLMCLSRFSMVDEMISLYKEMLTD 180

Query: 233 ---LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
               V  +++   T++   CK G +      F  +       D   Y  L+ G      V
Sbjct: 181 NGNSVFPNLITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCRNDDV 240

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            +AC +   +     R +   Y ++I GLC   +  +A + +    +D   P   T   L
Sbjct: 241 ERACGVFCVMP----RRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVL 296

Query: 350 LVCCAEMGRMDNFFKLLAQMEK-------LKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
           +    E GR      L  +M +         ++V  D        + KE R+  AL +  
Sbjct: 297 VCALCESGRELEALSLFGEMRERGCEPNVYTYTVLID-------YLCKEGRMDEALKMLN 349

Query: 403 ELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           E+  KG + SV  +N L+G+  + G ++ A+ + G M    +  N  +++  I       
Sbjct: 350 EMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGK 409

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
            +  A    NK++E    P V  YN L  GLC++G +D+A  L R  + +  S P ++ +
Sbjct: 410 SMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFS-PDQWTF 468

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              ++ +CR G   +  ++L  + ++    NE   +A+I G CK G +E A  +F  +  
Sbjct: 469 NAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLA 528

Query: 582 RKLLTEANTIVYDEILIEHMKKK 604
            + L   N+I ++ ++I+ ++K+
Sbjct: 529 EECL--PNSITFN-VMIDGLRKE 548



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 104/467 (22%), Positives = 196/467 (41%), Gaps = 38/467 (8%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + + + +L  M      P+V  Y  +I      +++D  + +  +M +  +  DV+ 
Sbjct: 373 RGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVT 432

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI GLC+ G V     LFR M  +G   D+  +   +  L   G+VG+A  +L+ L 
Sbjct: 433 YNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLK 492

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +   +A+   Y ++I G C+  + + A  LF+  + ++  P+  T N ++    + G++ 
Sbjct: 493 EKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQ 552

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNI 417
           +   L+  M K  F V   L  +   +  V KE     A ++   L   GY  +V  Y  
Sbjct: 553 DAMLLVEDMAK--FDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTA 610

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
            + A    G +++A  +  K++   + ++S  +++ I  +   G +  A     ++    
Sbjct: 611 FIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTG 670

Query: 478 QVPSVAAYNCLTKGLC----------KIG-----------------EIDAAMMLVR-DCL 509
             PS   Y+ L K L            +G                 +ID  +  V  + +
Sbjct: 671 CEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKM 730

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
                 P    Y+  I  +C+ G       + + M + G  P+E+I ++++S  CK G  
Sbjct: 731 AECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMF 790

Query: 570 EEARKVFTNLRERKLLTEANTIVYDEI---LIEHMKKKTADLVLSGL 613
            EA  +  ++ E   L    +  Y  +   L E M K+ A+ V   L
Sbjct: 791 GEAVTLLDSMMECSHLAHLES--YKLLICGLFEQMNKEKAEAVFCSL 835



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 93/450 (20%), Positives = 181/450 (40%), Gaps = 58/450 (12%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKM 194
           AS+ F    +  G+  +  ++NA   CL R                 GR+ E  +ILE +
Sbjct: 449 ASRLFRLMIRD-GFSPDQWTFNAFMVCLCR----------------MGRVGEAHQILESL 491

Query: 195 RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
           +    K +  AYTA+I        ++    +++ M  +    + + +  +I GL K G+V
Sbjct: 492 KEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKV 551

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
                L  +M +  +      Y +L+E ++ E    +A ++L  L+ SGY+ ++  Y + 
Sbjct: 552 QDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAF 611

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM----- 369
           I   C   + ++A ++      + +  D    N L+     MG +D+ F +L +M     
Sbjct: 612 IKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGC 671

Query: 370 --EKLKFSVAAD---LEKFFEFLVGKEERIMMALDV------------------------ 400
               L +S+      +EK       KE    + LDV                        
Sbjct: 672 EPSYLTYSILMKHLVIEKH-----KKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVL 726

Query: 401 FEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           FE++   G   ++  Y+ L+  L ++G +  A  L+  MR   +  + +  +  +    +
Sbjct: 727 FEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCK 786

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
            G   EA    + ++E S +  + +Y  L  GL +    + A  +    L        E 
Sbjct: 787 LGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLL-RCGYNYDEV 845

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
            + + I  + ++G  ++  E+LN M + GC
Sbjct: 846 AWKVLIDGLAKTGYVDQCSELLNLMEKNGC 875


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 203/450 (45%), Gaps = 28/450 (6%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           + +  +M  N    D+  +  +I   +   +      V+  + K   E + +   TLI G
Sbjct: 76  ISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKG 135

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC  G++ +      ++   G  +++  YG LI GL   G+   A  LL+ +     + +
Sbjct: 136 LCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPN 195

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           + +YN+II  +C+VK  ++A+ L+   V   ++PD  T + L+     +G++++   L  
Sbjct: 196 VVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFN 255

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
           +M  +   +  D+  F   + G  KE R+  A +V   +  +G    V  Y  LM     
Sbjct: 256 KM--ISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCL 313

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
           + +V KA  +F  M    +  N  S++I I    +   + EA     ++   + +P V  
Sbjct: 314 VKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVT 373

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN L  GLCK G+I  A+ LV D + +      +  Y   +  +C++ + +K I +L +M
Sbjct: 374 YNSLIDGLCKSGKISYALKLV-DEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKM 432

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
             EG  P+    + +I G+CK G L++A+ +F +L    L+   N  VY           
Sbjct: 433 KDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDL----LVKGYNITVY----------- 477

Query: 605 TADLVLSGL-------KFFGLESKLKAKGC 627
           T  +++ G        K   L SK++  GC
Sbjct: 478 TYTVMIQGFCDNDLFDKALALLSKMEDNGC 507



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 175/407 (42%), Gaps = 41/407 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+ +  L++L ++   L +P+V  Y  +I  +   + ++    ++ EM    +  DV+ Y
Sbjct: 175 GQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTY 234

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G C  G++     LF +M    I  D   + +L++G   EG+V +A ++L  ++ 
Sbjct: 235 SALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMK 294

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + D+  Y S++ G C VKQ +KA  +F    Q  +  +  + N ++    ++ ++D 
Sbjct: 295 QGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDE 354

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNIL 418
              L  +M     ++  D+  +   + G  K  +I  AL + +E+  +G     I YN +
Sbjct: 355 AMNLFKEMHCK--NIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSI 412

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + AL +  +V KA+ L  KM+   ++                                  
Sbjct: 413 LDALCKNHQVDKAIALLTKMKDEGIQ---------------------------------- 438

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P +  Y  L  GLCK G +  A  +  D L       T + Y + I   C +   +K +
Sbjct: 439 -PDMYTYTILIDGLCKGGRLKDAQNIFEDLLVK-GYNITVYTYTVMIQGFCDNDLFDKAL 496

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
            +L++M   GC PN      II  + +    + A K+   +  R LL
Sbjct: 497 ALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGLL 543



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 117/275 (42%), Gaps = 36/275 (13%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E   +L  M +   KPDV  Y +++      + ++    ++  M +  V A+V +
Sbjct: 279 EGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQS 338

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G CK  +V     LF+EM    I+ D   Y  LI+GL   GK+  A  L+ ++ 
Sbjct: 339 YNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMH 398

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D G   D   YNSI+  LC+  Q DKA  L      + + PD  T   L+    + GR+ 
Sbjct: 399 DRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLK 458

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
           +                                   A ++FE+L  KGY+ +V  Y +++
Sbjct: 459 D-----------------------------------AQNIFEDLLVKGYNITVYTYTVMI 483

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
               +     KAL L  KM       N+ ++ I I
Sbjct: 484 QGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIII 518


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 177/383 (46%), Gaps = 8/383 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G +++  E+L +M      P+VF YT +I       ++D    ++  M    + A+   
Sbjct: 120 NGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYI 179

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G  K G    G EL+++MK  G+L +   Y  LI     +GK+  A  +  ++ 
Sbjct: 180 YTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEIS 239

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   +   YN +IGGLCR  Q  KA  L E   +  + P   T N L+      G++D
Sbjct: 240 KRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLD 299

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI---MMALDVFEELKGKGYS-SVPIYN 416
              K L+ +EKLK          +  L+    ++    +  ++  E++ +G S S   Y 
Sbjct: 300 ---KALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYT 356

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           ILM   +   +++KA  +F  M+ + L  +  ++ + I      G+++EA + +  ++EM
Sbjct: 357 ILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEM 416

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P+   YN +  G CK      A+  + + + N  + P    Y  TI  +C+ G++ +
Sbjct: 417 HLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVT-PNVASYISTIQILCKDGKSIE 475

Query: 537 IIEVLNEMTQEGCPPNEVICSAI 559
              +L EMT+ G  P E +CS +
Sbjct: 476 AKRLLKEMTEAGLKPPESLCSKV 498



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 137/309 (44%), Gaps = 36/309 (11%)

Query: 88  IARFITDAFRKNQFQWGPQVVTELSKLRRVTPDL------VAEVLKVENNPTLASKFFHW 141
           I  F    ++K+ F+   ++     KL  V P+L      + E  + +   +LA K F  
Sbjct: 184 INGFFKKGYKKDGFELYQKM-----KLVGVLPNLYTYNSLITEYCR-DGKLSLAFKVFDE 237

Query: 142 AGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE----------------LMD---SQG 182
             K +G   N  +YN L   L R      A+ + E                LMD   + G
Sbjct: 238 ISK-RGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTG 296

Query: 183 RIAEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           ++ + L  LEK++   LC P +  Y  +I   +   N      +  EM+   +    + Y
Sbjct: 297 QLDKALSYLEKLKLIGLC-PTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTY 355

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+    +   + + +E+F  MK  G++ D+  YGVLI GL  +G + +A  L K +V+
Sbjct: 356 TILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVE 415

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF-STVNPLLVCCAEMGRMD 360
              + +  IYN++I G C+     KA K  E  V++ + P+  S ++ + + C + G+  
Sbjct: 416 MHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKD-GKSI 474

Query: 361 NFFKLLAQM 369
              +LL +M
Sbjct: 475 EAKRLLKEM 483


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 2/384 (0%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PD + Y  +IR L         L V +EM +     DV+ Y  L+   CK     +  +
Sbjct: 29  EPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMK 88

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L  EM++ G   D   Y V++ G+  EG+V  A + LK+L   G   +   YN ++ GLC
Sbjct: 89  LLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLC 148

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
             ++++ A +L     Q    P+  T N L+      G ++   ++L Q+ K   +  + 
Sbjct: 149 TAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSL 208

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM 438
                     K++++  A+   + +  +G Y  +  YN L+ AL   GEV  A+ L  ++
Sbjct: 209 SYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQL 268

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
           +        +S++  I    ++G   EA E  N+++     P +  Y+ +  GLC+   I
Sbjct: 269 KDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRI 328

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           + A+      + ++   P    Y   IL +C+  E    I++   M   GC PNE   + 
Sbjct: 329 EDAIRAFGK-VQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTI 387

Query: 559 IISGMCKHGTLEEARKVFTNLRER 582
           +I G+   G ++EAR +   L  R
Sbjct: 388 LIEGLAYEGLIKEARDLLDELCSR 411



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 171/369 (46%), Gaps = 11/369 (2%)

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           MAY  ++ G C  G++     L  EM    +  D   Y  LI GL G G+   A  +L +
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDE 57

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           ++      D+  Y  ++   C+   + +A KL +        PD  T N ++    + GR
Sbjct: 58  MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 117

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIY 415
           +D+  + L  +    +    +   +   L G    ER   A ++  E+  KG   +V  +
Sbjct: 118 VDDAIEFLKNLP--SYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTF 175

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N+L+  L   G V+ AL +  ++       NSLS++  +    +   + +A    + ++ 
Sbjct: 176 NMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVS 235

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P + +YN L   LC+ GE+D A+ L+   L +    P    Y   I  + ++G+ +
Sbjct: 236 RGCYPDIVSYNTLLTALCRSGEVDVAVELLHQ-LKDKGCAPVLISYNTVIDGLTKAGKTK 294

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           + +E+LNEM  +G  P+ +  S I +G+C+   +E+A + F  +++  +    NT++Y+ 
Sbjct: 295 EALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGI--RPNTVLYNA 352

Query: 596 ILIEHMKKK 604
           I++   K++
Sbjct: 353 IILGLCKRR 361



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 17/193 (8%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           QKG   N  ++N L   L R  L   A                LE+LE++ +  C P+  
Sbjct: 165 QKGCPPNVVTFNMLISFLCRKGLVEPA----------------LEVLEQIPKYGCTPNSL 208

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
           +Y  ++     ++ +D  +   + M       D+++Y TL+  LC+ G V    EL  ++
Sbjct: 209 SYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQL 268

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K+ G       Y  +I+GL   GK  +A +LL ++V  G + D+  Y++I  GLCR  + 
Sbjct: 269 KDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRI 328

Query: 325 DKAYKLFEVTVQD 337
           + A + F   VQD
Sbjct: 329 EDAIRAFG-KVQD 340


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/457 (23%), Positives = 204/457 (44%), Gaps = 28/457 (6%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           GY  +  +YNA+   LS  +L  A                    L  M R+   P+V+ Y
Sbjct: 113 GYAPSVPAYNAVLLALSDASLPSAR-----------------RFLSSMLRHGVAPNVYTY 155

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             ++R L A   L+  + V  +M+      + + Y TL+   C+ G +     +   M+E
Sbjct: 156 NILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMRE 215

Query: 267 NG-ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
            G    +   +  ++ GL   G++  A  +  ++V  G   D+  YN+++ G C+V    
Sbjct: 216 EGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLH 275

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           ++  +F    Q  L PD  T   L+    + G ++    L+AQM +    +    E  F 
Sbjct: 276 ESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN---EVTFT 332

Query: 386 FLVG---KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
            L+    K+  +  AL   EE++  G   SV  YN L+    ++G +  A  L  +M   
Sbjct: 333 ALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAK 392

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            ++ + +++S  I  + + G++  A + + K+++   +P    Y+ L +GLC+   ++ A
Sbjct: 393 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 452

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
             L  + L  +   P EF Y   I   C+ G  EK + + +EM ++G  P+ V  S +I+
Sbjct: 453 CELFENML-QLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLIN 511

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           G+ K    +EA ++   L     + +   I YD +++
Sbjct: 512 GLSKSARTKEAHRLLFKLYHEDPVPD--NIKYDALML 546



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 135/288 (46%), Gaps = 25/288 (8%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+    E++ +M     KPDV  Y+ +I       NLD+  ++ ++M K  V  D + Y
Sbjct: 377 GRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITY 436

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI GLC+  R+    ELF  M + G+  D   Y  LI+G   EG V KA  L  +++ 
Sbjct: 437 SSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIR 496

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  Y+ +I GL +  +  +A++L      +D  PD    + L++CC+       
Sbjct: 497 KGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCS------- 549

Query: 362 FFKLLAQMEKLKF-SVAADLEKF-FEFLVGKEERIMMA-LDVFEELKGKGYSSVPIYNIL 418
                    K +F SV A L+ F  + L+ + +++  + LD   +L G       +Y+IL
Sbjct: 550 ---------KAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGS------VYSIL 594

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           +      G V+KAL    +M       NS S    ++   E G ++EA
Sbjct: 595 IHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEA 642



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 155/350 (44%), Gaps = 28/350 (8%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + + + ++ +MR    + +   +TA+I     +  LD  L   EEM+K  ++  V+ Y
Sbjct: 307 GNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCY 366

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G CK GR+    EL REM+   +  D   Y  +I G    G +  A  L + ++ 
Sbjct: 367 NALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLK 426

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   Y+S+I GLC  K+ + A +LFE  +Q  + PD  T   L+    + G ++ 
Sbjct: 427 KGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEK 486

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI----- 414
              L  +M  ++  V  D+  +   + G  K  R   A      L  K Y   P+     
Sbjct: 487 ALSLHDEM--IRKGVLPDVVTYSVLINGLSKSARTKEA----HRLLFKLYHEDPVPDNIK 540

Query: 415 YNILM-----------GALLE----IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           Y+ LM            ALL+     G +K+A  ++  M   N +++   +SI I  H  
Sbjct: 541 YDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCR 600

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
            G++ +A   H +++     P+  +   L +GL + G +  A   ++D L
Sbjct: 601 GGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLL 650



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 4/198 (2%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           +V  YNIL+ AL   G +++A+ + G MRG     N+++++  +     +G++  A    
Sbjct: 151 NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 210

Query: 471 NKIIEMSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
           + + E     P++  +N +  GLCK G ++ A   V D +      P    Y   +   C
Sbjct: 211 SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARK-VFDEMVREGLAPDVVSYNTLLSGYC 269

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           + G   + + V +EMTQ G  P+ V  +++I   CK G LE+A  +   +RER L    N
Sbjct: 270 KVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGL--RMN 327

Query: 590 TIVYDEILIEHMKKKTAD 607
            + +  ++    KK   D
Sbjct: 328 EVTFTALIDGFCKKGFLD 345



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 104/218 (47%), Gaps = 5/218 (2%)

Query: 393 RIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGL-NLEVNSLSF 450
           R+  A+ V  +++G G +   + YN L+ A    GE+  A  +   MR   N + N ++F
Sbjct: 167 RLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTF 226

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +  +    ++G +  A +  ++++     P V +YN L  G CK+G +  ++ +  + + 
Sbjct: 227 NSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSE-MT 285

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
                P    +   I   C++G  E+ + ++ +M + G   NEV  +A+I G CK G L+
Sbjct: 286 QRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLD 345

Query: 571 EARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADL 608
           +A      +  RK   + + + Y+ ++  + K    DL
Sbjct: 346 DALLAVEEM--RKCGIQPSVVCYNALINGYCKLGRMDL 381


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 173/385 (44%), Gaps = 41/385 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +    ++ ++MRR++ +P V  +  +I  +   R+LDA   +++EM    V+ DV  Y
Sbjct: 200 GELVSARKVFDEMRRSV-QPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTY 258

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G C+ GR+    ++F EM++ G+  +  ++  LI+    EG V    DL +D+  
Sbjct: 259 GALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRV 318

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   DL  YN+++ GLCR +    A  + E      L PD  T   L+  C + G++D 
Sbjct: 319 RGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLD- 377

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
                                             MA+D+ +++  K  S   + Y  L+ 
Sbjct: 378 ----------------------------------MAMDIKQKMAEKEVSLDEVTYTALIS 403

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L + G    A  +  +M    LE ++ ++++ I      GD+    +   ++    + P
Sbjct: 404 GLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKP 463

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  YN +  GLCK+G++  A ML+   L N+   P +  Y + +   C+ G+     E+
Sbjct: 464 GVVTYNVIMNGLCKLGQMKNADMLLHAML-NIGVSPDDITYNILLDGQCKHGKVANSEEL 522

Query: 541 LNEMTQEGCPPNEVICSAIISGMCK 565
               + +G  P+  + +++IS + K
Sbjct: 523 ---ESSKGMVPDFAVYTSLISELAK 544



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 143/320 (44%), Gaps = 9/320 (2%)

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
            +  + ++ + G+  +  ++ VL+   V  G++  A  +  ++  S  +  +  +N++I 
Sbjct: 170 AYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRRS-VQPTVVTFNTLIS 228

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           G+CR +  D    L++      + PD  T   L+      GRM+N  K+  +M     + 
Sbjct: 229 GMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNP 288

Query: 377 AADLEKFFEFLVG---KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKAL 432
            A     F  L+    KE  +   +D++++++ +G    +  YN L+  L     +K A 
Sbjct: 289 NA---VVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAE 345

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            +  +M+   L+ + ++++  I    + G +  A +   K+ E         Y  L  GL
Sbjct: 346 SIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGL 405

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
            K G    A  ++R+ +   A  P    Y + I   CR G+ +   ++L EM  +G  P 
Sbjct: 406 SKAGRPVDAERVLREMM-EAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPG 464

Query: 553 EVICSAIISGMCKHGTLEEA 572
            V  + I++G+CK G ++ A
Sbjct: 465 VVTYNVIMNGLCKLGQMKNA 484



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 2/199 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G +   +++ + MR     PD+ AY A++  L   RNL A   + EEMK   ++ D + 
Sbjct: 303 EGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVT 362

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI G CK G++    ++ ++M E  + +D   Y  LI GL   G+   A  +L++++
Sbjct: 363 YTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMM 422

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           ++    D   Y  +I   CR       +KL +        P   T N ++    ++G+M 
Sbjct: 423 EAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMK 482

Query: 361 NFFKLLAQMEKLKFSVAAD 379
           N   LL  M  L   V+ D
Sbjct: 483 NADMLLHAM--LNIGVSPD 499



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 142/323 (43%), Gaps = 14/323 (4%)

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL-CRVKQFDKAYKLFEVTVQD 337
           L      EG +  AC L    V    R  + +   +  GL  R+    +AY  +   +  
Sbjct: 125 LAAAYADEGLLPDACSL----VLLALRRGISLPAPVCSGLMSRLPSTPEAYTFYLQLLDA 180

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK-EERIMM 396
            +AP+    N L+     +G + +  K+  +M +   SV   +  F   + G    R + 
Sbjct: 181 GMAPETRLFNVLMRDFVRLGELVSARKVFDEMRR---SVQPTVVTFNTLISGMCRARDLD 237

Query: 397 ALD-VFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
           A+D +++E+   G    V  Y  L+      G ++ A+ +F +MR   +  N++ F+  I
Sbjct: 238 AVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLI 297

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
             H + G++    + +  +     +P + AYN L  GLC+   + AA  +V + + N   
Sbjct: 298 DAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEE-MKNAGL 356

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P +  Y   I   C+ G+ +  +++  +M ++    +EV  +A+ISG+ K G   +A +
Sbjct: 357 KPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAER 416

Query: 575 VFTNLRERKLLTEANTIVYDEIL 597
           V   + E  L  E +   Y  ++
Sbjct: 417 VLREMMEAAL--EPDNTTYTMVI 437



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 3/145 (2%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +   GR  +   +L +M     +PD   YT +I     + ++    ++ +EM+    +  
Sbjct: 405 LSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPG 464

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ Y  ++ GLCK G++     L   M   G+  D   Y +L++G    GKV  + +L  
Sbjct: 465 VVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVANSEELES 524

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVK 322
                G   D  +Y S+I  L + K
Sbjct: 525 ---SKGMVPDFAVYTSLISELAKKK 546


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 179/398 (44%), Gaps = 4/398 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD +    +I      + +D    V  ++ K  ++  ++ + TLI GLCK G+  +  EL
Sbjct: 155 PDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVEL 214

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F +M   G   D   Y  +I GL   G+   A  L + + ++G + D+  Y++II  LC+
Sbjct: 215 FDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCK 274

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            ++ ++A  +F       ++P+  T N L+       R      +L +M  L        
Sbjct: 275 DRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVT 334

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
                 +  KE  +  A  V + +   G   +V  Y+ LM       EV +A  LF  M 
Sbjct: 335 FSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMI 394

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
               + +  S++I I  + ++  I EA +  N++I     P + +YN L  GLC++G + 
Sbjct: 395 TKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLR 454

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A  L ++ L N  + P    Y++ +   C+ G   K   +   M      PN V+ + +
Sbjct: 455 EAHDLFKNMLTN-GNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNIL 513

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           I  MCK   L+EARK+F+ L  + L  + N  +Y  I+
Sbjct: 514 IDAMCKSRNLKEARKLFSELFVQGL--QPNVQIYTTII 549



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 171/400 (42%), Gaps = 42/400 (10%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL-DACLRVWEEMKKDLVEADVMAYV 242
           I + L     M     +P +  +  ++  +   R+  DA + + ++M+   +  D     
Sbjct: 102 IDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLH 161

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI    +  RV  G  +  ++ + G+ +    +  LI GL   GK G+A +L  D+V  
Sbjct: 162 MLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVAR 221

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMD 360
           GY+ D+  Y +II GLC++ +   A  LF    +    PD  T + ++  +C        
Sbjct: 222 GYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLC-------- 273

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
                                        K+ R+  ALD+F  +K KG S ++  YN L+
Sbjct: 274 -----------------------------KDRRVNEALDIFSYMKAKGISPNIFTYNSLI 304

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L      ++A  +  +M  LN+  N ++FS+ I    + G++ EA      + EM   
Sbjct: 305 QGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVE 364

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+V  Y+ L  G     E+  A  L  D +      P  F Y + I   C++    +  +
Sbjct: 365 PNVVTYSSLMNGYSLQAEVVEARKLF-DVMITKGCKPDVFSYNILINGYCKAKRIGEAKQ 423

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           + NEM  +G  P+ V  + +I G+C+ G L EA  +F N+
Sbjct: 424 LFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNM 463



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 174/404 (43%), Gaps = 41/404 (10%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +  KM    C+PDV  Y+ +I  L  +R ++  L ++  MK   +  ++  Y +LI GLC
Sbjct: 249 LFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLC 308

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
              R      +  EM    I+ +   + +LI     EG V +A  +LK + + G   ++ 
Sbjct: 309 NFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVV 368

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            Y+S++ G     +  +A KLF+V +     PD  + N L+    +  R+    +L  +M
Sbjct: 369 TYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEM 428

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIG 426
             +   +  D+  +   + G  +  R+  A D+F+ +   G    +  Y+IL+    + G
Sbjct: 429 --IHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQG 486

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            + KA  LF  M+   L+ N + ++I I    +S ++ EA +  +++      P+V  Y 
Sbjct: 487 YLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYT 546

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            +  GLCK G +D A+                                    E    M +
Sbjct: 547 TIINGLCKEGLLDEAL------------------------------------EAFRNMEE 570

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +GCPPNE   + II G  +H     A ++   +RE+  + +  T
Sbjct: 571 DGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 178/405 (43%), Gaps = 45/405 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  + +E+ + M     +PDV  YT                                  
Sbjct: 206 GKFGQAVELFDDMVARGYQPDVHTYT---------------------------------- 231

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T+I GLCK G  V    LFR+M E G   D   Y  +I+ L  + +V +A D+   +  
Sbjct: 232 -TIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKA 290

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-VCCAEMGRMD 360
            G   ++  YNS+I GLC   ++ +A  +    +  ++ P+  T + L+ + C E     
Sbjct: 291 KGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKE----G 346

Query: 361 NFFKLLAQMEKL-KFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYN 416
           N F+    ++ + +  V  ++  +   + G   +  ++ A  +F+ +  KG    V  YN
Sbjct: 347 NVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYN 406

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+    +   + +A  LF +M    L  + +S++  I    + G + EA +    ++  
Sbjct: 407 ILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTN 466

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
             +P +  Y+ L  G CK G +  A  L R  + +    P    Y + I  +C+S   ++
Sbjct: 467 GNLPDLCTYSILLDGFCKQGYLAKAFRLFR-AMQSTYLKPNMVMYNILIDAMCKSRNLKE 525

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
             ++ +E+  +G  PN  I + II+G+CK G L+EA + F N+ E
Sbjct: 526 ARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEE 570



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 95/191 (49%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q  + E  ++ + M    CKPDVF+Y  +I      + +    +++ EM    +  D+++
Sbjct: 380 QAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVS 439

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI GLC+ GR+   H+LF+ M  NG L D   Y +L++G   +G + KA  L + + 
Sbjct: 440 YNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQ 499

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +  + ++ +YN +I  +C+ +   +A KLF       L P+      ++    + G +D
Sbjct: 500 STYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLD 559

Query: 361 NFFKLLAQMEK 371
              +    ME+
Sbjct: 560 EALEAFRNMEE 570



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 144/318 (45%), Gaps = 24/318 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFR-AADQVPELMD------------------SQGRI 184
           K KG   N  +YN+L   L   + +R A+  + E+M                    +G +
Sbjct: 289 KAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNV 348

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E   +L+ M     +P+V  Y++++   + +  +    ++++ M     + DV +Y  L
Sbjct: 349 FEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNIL 408

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK  R+    +LF EM   G+  D   Y  LI+GL   G++ +A DL K+++ +G 
Sbjct: 409 INGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGN 468

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             DL  Y+ ++ G C+     KA++LF       L P+    N L+    +   +    K
Sbjct: 469 LPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARK 528

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGA 421
           L +++      +  +++ +   + G  KE  +  AL+ F  ++  G       YN+++  
Sbjct: 529 LFSEL--FVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRG 586

Query: 422 LLEIGEVKKALYLFGKMR 439
            L+  +  +A+ L G+MR
Sbjct: 587 FLQHKDESRAVQLIGEMR 604



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 65/129 (50%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG +A+   +   M+    KP++  Y  +I  +   RNL    +++ E+    ++ +V  
Sbjct: 485 QGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQI 544

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I GLCK G +    E FR M+E+G   +   Y V+I G +      +A  L+ ++ 
Sbjct: 545 YTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMR 604

Query: 301 DSGYRADLG 309
           + G+ AD+ 
Sbjct: 605 EKGFVADVA 613



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 76/165 (46%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E  ++ + M  N   PD+  Y+ ++     +  L    R++  M+   ++ +++ Y
Sbjct: 451 GRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMY 510

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI  +CK   +    +LF E+   G+  +  IY  +I GL  EG + +A +  +++ +
Sbjct: 511 NILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEE 570

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
            G   +   YN II G  + K   +A +L     +     D +T 
Sbjct: 571 DGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVADVATT 615


>gi|356571194|ref|XP_003553764.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g04760, chloroplastic-like [Glycine max]
          Length = 531

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/448 (25%), Positives = 191/448 (42%), Gaps = 59/448 (13%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K KG+  +  +YN L   L    +  AA                LE   ++ +    P V
Sbjct: 116 KNKGFSPDIVTYNILIGSLCSRGMLHAA----------------LEFKNQLLKENFNPTV 159

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT +I     +  +D  +++ +EM +  ++ DV  Y ++I  +C+ G V R  E+   
Sbjct: 160 VTYTILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSIIX-MCREGYVDRAFEVISS 218

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +   G  +D   Y +L+  L  +GK     +L+ D+V  G  A++  Y+ +I  LCR  +
Sbjct: 219 ISSKGYALDVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGK 278

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            ++   L +   +  L PD    +PL+    + GR+D   ++L  M  +      D+  +
Sbjct: 279 VEEGVGLLKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVM--ISDGCVPDIVNY 336

Query: 384 FEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
              L  + K++R   AL +FE+L   G S +   YN +  AL   G   +AL        
Sbjct: 337 NTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKVRAL-------- 388

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
                               G ILE  +  +        P V AYN L   LC+ G +D 
Sbjct: 389 --------------------GMILEMLDXVD--------PDVIAYNSLISCLCRDGMVDE 420

Query: 501 AMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           A+ L+ D  + +    P+   Y + +L +CR G      EVL  M  +GC PNE   + +
Sbjct: 421 AIELLVDMEMESSECKPSVVSYNIVLLGLCRVGRVSDATEVLAAMVDKGCLPNETTYTFL 480

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTE 587
           I G+   G L +AR + T L     ++E
Sbjct: 481 IEGIGFGGWLNDARDLATTLVNMDAISE 508



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 161/373 (43%), Gaps = 6/373 (1%)

Query: 224 RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
           +V + MK      D++ Y  LI  LC  G +    E   ++ +         Y +LIE  
Sbjct: 110 QVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVTYTILIEAT 169

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
           + +G + +A  LL ++ +   + D+  YNSII  +CR    D+A+++         A D 
Sbjct: 170 LLQGGIDEAIKLLDEMFEINLQPDVFPYNSIIX-MCREGYVDRAFEVISSISSKGYALDV 228

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE 403
            T N LL      G+ +  F+L++ M                  + ++ ++   + + ++
Sbjct: 229 ITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEEGVGLLKD 288

Query: 404 LKGKGYSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
           +K KG       Y+ L+  L + G V  A+ +   M       + ++++  + C  +   
Sbjct: 289 MKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKR 348

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
             EA     K+ E+   P+ ++YN +   L   G    A+ ++ + L  V   P    Y 
Sbjct: 349 ADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKVRALGMILEMLDXV--DPDVIAYN 406

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEG--CPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
             I  +CR G  ++ IE+L +M  E   C P+ V  + ++ G+C+ G + +A +V   + 
Sbjct: 407 SLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCRVGRVSDATEVLAAMV 466

Query: 581 ERKLLTEANTIVY 593
           ++  L    T  +
Sbjct: 467 DKGCLPNETTYTF 479


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 122/500 (24%), Positives = 220/500 (44%), Gaps = 29/500 (5%)

Query: 114 LRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQ 173
           L  V  D   +V KV+    +A KFFH   K  G   +  +Y ++   L + N    A +
Sbjct: 133 LYNVCIDCFGKVGKVD----MAWKFFHEM-KANGLVPDDVTYTSMMGVLCKANRLDEAVE 187

Query: 174 VPELMD-------------------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
           + E M+                   S G+  E   +LE+ R   C P V AY  ++  L 
Sbjct: 188 IFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLG 247

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
            +   D  LR++EEMK+D +  ++  Y  +I  LCK G V    ++   MKE G+  +  
Sbjct: 248 KKGKTDKALRIFEEMKRDAM-PNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVR 306

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
              ++I+ L    K+ +AC + + +       D   + S+I GL +  + D AY+++E  
Sbjct: 307 TINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERM 366

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI 394
           +  D  P+      L+    +  R ++  K+  +M +   S    L   +   V K    
Sbjct: 367 LDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGET 426

Query: 395 MMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
                +FEE+K +G+      Y+IL+ +L++ G  ++   L+  M+     +++ +++  
Sbjct: 427 EKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTV 486

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
           I    +SG + +A +   ++  M   P+V  Y  +  GL KI  +D A ML  +   N  
Sbjct: 487 IDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSN-G 545

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
               +  Y+  I    + G  ++   V+ EM Q+G  PN    + ++ G+ K   + EA 
Sbjct: 546 IELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEAL 605

Query: 574 KVFTNLRERKLLTEANTIVY 593
             F ++++ K     N I Y
Sbjct: 606 VCFQSMKDLK--CTPNQITY 623



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 195/449 (43%), Gaps = 13/449 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ E  ++L+ MR    +P   AYT +I  L+     D  L ++ +M++   E +V    
Sbjct: 41  KLIEAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLT 100

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TLI    + GRV     L  EMK N    D  +Y V I+     GKV  A     ++  +
Sbjct: 101 TLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKAN 160

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D   Y S++G LC+  + D+A ++FE   Q+   P     N +++     G+ D  
Sbjct: 161 GLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEA 220

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422
           + LL +        +          +GK+ +   AL +FEE+K     ++P YNI++G L
Sbjct: 221 YSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMPNLPTYNIIIGML 280

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            + G V+ A  +   M+   L  N  + +I I    ++  + EAC     +      P  
Sbjct: 281 CKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDG 340

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
           A +  L  GL K G +D A  +    L +    P    Y   I +  +    E   ++  
Sbjct: 341 ATFCSLIDGLGKQGRVDDAYRIYERML-DADQIPNVVVYTSLIRNFFKCDRKEDGHKMYK 399

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL--TEANTIVYDEILIEH 600
           EM + GC P+ ++ +  +  + K G  E+ R +F  ++ R  L  T + +I+   ++   
Sbjct: 400 EMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAG 459

Query: 601 MKKKTADLVLSGLKFFGLESKLKAKGCKL 629
             ++T +L  +          +K +GC L
Sbjct: 460 FARETYELYYA----------MKDQGCVL 478



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 175/405 (43%), Gaps = 8/405 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIR-VLAAERNLDACLRVWEEMKKDLVEADVM 239
           QGR+ +   I E+M      P+V  YT++IR     +R  D   ++++EM +     D+M
Sbjct: 353 QGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDG-HKMYKEMMRSGCSPDLM 411

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
              T +  + K G   +G  LF E+K  G L D   Y +LI  LV  G   +  +L   +
Sbjct: 412 LLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAM 471

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D G   D   YN++I G C+  + +KAY+L E        P   T   ++   A++ R+
Sbjct: 472 KDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRL 531

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
           D  + L  + +     +   +        GK  R+  A  V EE+  KG + +V  +N L
Sbjct: 532 DEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCL 591

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L++  E+ +AL  F  M+ L    N +++ I I    +     +A     ++ +   
Sbjct: 592 LDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGL 651

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEK 536
            P+   Y  +  GL K G +  A  L        ASG  P    Y   I  +  +  A  
Sbjct: 652 KPNTITYTAMISGLAKSGNVAQASSLFERFR---ASGGIPDSASYNAMIEGLSIANRALD 708

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
             ++  E   +GC  +   C A++  + K   LE+A  V   LRE
Sbjct: 709 AYQLFEETRLKGCSIHTKTCVALLDALHKAECLEQAAIVGAVLRE 753



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 135/308 (43%), Gaps = 15/308 (4%)

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           L+   V   K+ +A DLL+ +    +R     Y ++IG L  V + D+   LF    +  
Sbjct: 32  LVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELG 91

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL 398
              +   +  L+   +  GR+D    LL +M+   F     L        GK  ++ MA 
Sbjct: 92  YEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAW 151

Query: 399 DVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
             F E+K  G   VP    Y  +MG L +   + +A+ +F +M        + +++  I 
Sbjct: 152 KFFHEMKANGL--VPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIM 209

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV----RDCLGN 511
            +  +G   EA     +      +PSV AYNC+   L K G+ D A+ +     RD + N
Sbjct: 210 GYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMPN 269

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
           +   PT   Y + I  +C++G  E   +V + M + G  PN    + +I  +CK   L+E
Sbjct: 270 L---PT---YNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDE 323

Query: 572 ARKVFTNL 579
           A  +F  +
Sbjct: 324 ACSIFEGM 331



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/427 (22%), Positives = 186/427 (43%), Gaps = 12/427 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+   L +L++M+ N    D+  Y   I        +D   + + EMK + +  D + 
Sbjct: 109 EGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVT 168

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +++  LCK  R+    E+F +M++N  +     Y  +I G    GK  +A  LL+   
Sbjct: 169 YTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQR 228

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G    +  YN I+  L +  + DKA ++FE  ++ D  P+  T N ++    + G ++
Sbjct: 229 AKGCIPSVVAYNCILTCLGKKGKTDKALRIFE-EMKRDAMPNLPTYNIIIGMLCKAGNVE 287

Query: 361 NFFKLLAQMEKLK-FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
             FK+   M++   F     +    + L  K +++  A  +FE +  K  S     +  L
Sbjct: 288 AAFKVRDAMKEAGLFPNVRTINIMIDRLC-KAQKLDEACSIFEGMDYKVCSPDGATFCSL 346

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L + G V  A  ++ +M   +   N + ++  I+   +     +  + + +++    
Sbjct: 347 IDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGC 406

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEK 536
            P +   N     + K GE +    L  +     A G  P    Y++ I  + ++G A +
Sbjct: 407 SPDLMLLNTYMDCVFKAGETEKGRALFEEI---KARGFLPDTRSYSILIHSLVKAGFARE 463

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
             E+   M  +GC  +    + +I G CK G + +A ++   L E K +    T+V    
Sbjct: 464 TYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQL---LEEMKTMGHHPTVVTYGS 520

Query: 597 LIEHMKK 603
           +++ + K
Sbjct: 521 VVDGLAK 527



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 117/245 (47%), Gaps = 6/245 (2%)

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
           RA + V +     G++ +  ++LE+M+     P V  Y +++  LA    LD    ++EE
Sbjct: 481 RAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEE 540

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
            K + +E + + Y +LI G  K GRV   + +  EM + G+  +   +  L++GLV   +
Sbjct: 541 AKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEE 600

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           + +A    + + D     +   Y  +I GLC+V++F+KA+  ++   +  L P+  T   
Sbjct: 601 INEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTA 660

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAA-DLEKFFEFLVGKE--ERIMMALDVFEELK 405
           ++   A+ G   N  +  +  E+ + S    D   +   + G     R + A  +FEE +
Sbjct: 661 MISGLAKSG---NVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETR 717

Query: 406 GKGYS 410
            KG S
Sbjct: 718 LKGCS 722



 Score = 40.4 bits (93), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 11/128 (8%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           N + YC+  N L +             +  +     ++M++   KP+   YTAMI  LA 
Sbjct: 619 NQITYCILINGLCKVR-----------KFNKAFVFWQEMQKQGLKPNTITYTAMISGLAK 667

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
             N+     ++E  +      D  +Y  +I GL    R +  ++LF E +  G  I    
Sbjct: 668 SGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKGCSIHTKT 727

Query: 276 YGVLIEGL 283
              L++ L
Sbjct: 728 CVALLDAL 735


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 133/537 (24%), Positives = 227/537 (42%), Gaps = 62/537 (11%)

Query: 65  PNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAE 124
           PN   Q  PS   T  LQ             +RKN     P   T +  L   TP  ++ 
Sbjct: 34  PNSLQQDLPSQIFTILLQPQ-----------WRKN-----PSFNTLIPSL---TPTHLSS 74

Query: 125 VLKVEN-NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV-PELMDSQG 182
           +    N +P  A  FF W   Q G+ H   SY  L + L RN   RAA+ V   ++ S  
Sbjct: 75  LFNNPNLHPLTALNFFKWIHYQHGFIHTVHSYQPLLFILVRNGFLRAAENVRNSMIKSCV 134

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
              E   +L  +  +     V +Y  +  VL+    +D    ++++M  D VE +++++ 
Sbjct: 135 SSHEARFVLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFN 194

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           T++   CK G VV     F  + + G   D   Y  LI G     ++G A  + + +   
Sbjct: 195 TMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQE 254

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   +   Y ++I G C V + D+A +LF    +D   PD  T   L+    E+G+    
Sbjct: 255 GCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGK---- 310

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
                + E LKF                          FEE+   G   +V  Y +L+  
Sbjct: 311 -----ETEALKF--------------------------FEEMVENGIEPNVYTYTVLIDY 339

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-P 480
             ++G++ + + +   M    L  + + F+  I  + + G ++E   C    +++++V P
Sbjct: 340 FCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRG-MMEDAICVLDSMKLNKVCP 398

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +   YN L  G C+   +D AM L+     N  S P    Y   I  +C++   +    +
Sbjct: 399 NSRTYNELICGFCRKKSMDRAMALLNKMYENKLS-PNLVTYNTLIHGLCKARVVDSAWRL 457

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            + M ++G  P++    A I  +CK G +E+A +VF +L+E+    EAN  +Y  ++
Sbjct: 458 HHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKH--AEANEFLYTALI 512



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 192/416 (46%), Gaps = 12/416 (2%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + +  ++ E M +  C  +  +YT +I        +D  L ++ +MK+D    DV  Y  
Sbjct: 241 LGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTV 300

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+   C+ G+     + F EM ENGI  +   Y VLI+     GK+ +  ++L  +++ G
Sbjct: 301 LVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKG 360

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
             + +  +N++I G C+    + A  + +    + + P+  T N L+        MD   
Sbjct: 361 LVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAM 420

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IYNIL 418
            LL +M + K S   +L  +   + G  K   +  A  +   +   G+  VP    +   
Sbjct: 421 ALLNKMYENKLS--PNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGF--VPDQRTFCAF 476

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L ++G+V++A  +F  ++  + E N   ++  I  + ++    +A     +++    
Sbjct: 477 IDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGC 536

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P+   +N L  GL K G+++ AM LV D +G   + PT   Y + I  + R  + ++  
Sbjct: 537 FPNSITFNVLLDGLRKEGKVEDAMSLV-DVMGKFDAKPTVHTYTILIEEILRESDFDRAN 595

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
             L++M   GC PN V  +A I   C+ G L EA ++   ++E  +L +  + +YD
Sbjct: 596 MFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLD--SFIYD 649



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 113/500 (22%), Positives = 202/500 (40%), Gaps = 104/500 (20%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+I E LE+  +M+ + C PDV  YT ++            L+ +EEM ++ +E +V  Y
Sbjct: 274 GKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTY 333

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG------------KV 289
             LI   CK G++  G E+   M E G++     +  LI+G    G            K+
Sbjct: 334 TVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKL 393

Query: 290 GKAC-----------------------DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            K C                        LL  + ++    +L  YN++I GLC+ +  D 
Sbjct: 394 NKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDS 453

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL-------AQMEKLKFSVAAD 379
           A++L  + ++D   PD  T    + C  +MG+++   ++        A+  +  ++   D
Sbjct: 454 AWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALID 513

Query: 380 ----LEKF---------------------FEFLV------GKEERIMMALDVFEELKGKG 408
                EKF                     F  L+      GK E  M  +DV  +   K 
Sbjct: 514 GYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAK- 572

Query: 409 YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
             +V  Y IL+  +L   +  +A     +M     + N ++++  I+ +   G +LEA E
Sbjct: 573 -PTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEE 631

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-MLVRDCLGNVASGPTEFKYALTILH 527
              KI E   +     Y+ L      IG++D+A  +L+R  + +    P+   Y++ + H
Sbjct: 632 MVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIR--MFDTGCEPSRQTYSILLKH 689

Query: 528 --------------------------VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
                                     + +  + E I  +  +M ++GC PN    S +I 
Sbjct: 690 LIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIK 749

Query: 562 GMCKHGTLEEARKVFTNLRE 581
           G+CK   L  A ++F +++E
Sbjct: 750 GLCKVEHLSLAFRLFNHMKE 769



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 2/182 (1%)

Query: 152 FASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIR 211
           F  YN     L  N+   + D       +   I  ML   EKM    C P+V  Y+ +I+
Sbjct: 692 FEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITML--FEKMVEQGCVPNVNTYSKLIK 749

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
            L    +L    R++  MK+  +      + +L+   CK G       L   M E   L 
Sbjct: 750 GLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLA 809

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
               Y +L+ GL  +G   KA ++ + L+  GY  D  ++  ++ GL R    D+  +L 
Sbjct: 810 HLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKVLLDGLVRKGYVDECSQLR 869

Query: 332 EV 333
           ++
Sbjct: 870 DI 871


>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 825

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 191/419 (45%), Gaps = 8/419 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+I E   +++      C P V  Y  +I     + +L    R   E+K   V   V  Y
Sbjct: 219 GKIEEGRRLIKHRWGKCCVPHVVFYNMIIDGYCKKGDLQCATRALNELKMKGVLPTVETY 278

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G CK G      +L  EM   G+ ++  ++  +I+     G V +A ++L+ + +
Sbjct: 279 GALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEYKYGLVTEAAEMLRRMAE 338

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  YN +I   C+  + ++A +L E   +  L P+  +  PL+    + G    
Sbjct: 339 MGCGPDITTYNIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTPLMHAYCKKGDYVK 398

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
              +L ++ ++     +DL  +  F+ G      I +AL V E++  KG +    IYNIL
Sbjct: 399 ASGMLFRIAEI--GEKSDLVSYGAFIHGVVVAGEIDVALMVREKMMEKGVFPDAQIYNIL 456

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           M  L + G +     L  +M   N++ +   F+  I   + +G++ EA +    II    
Sbjct: 457 MSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIKIFKVIIRKGV 516

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P +  YN + KG CK G++  A+  + + + +V   P E+ Y+  I    +  +    +
Sbjct: 517 DPGIVGYNAMIKGFCKFGKMTDALSCLNE-MNSVHHAPDEYTYSTVIDGYVKQHDMSSAL 575

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           ++  +M +    PN +  +++I+G CK   +  A KVF+ ++   L+   N + Y  ++
Sbjct: 576 KMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFDLV--PNVVTYTTLV 632



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 115/531 (21%), Positives = 222/531 (41%), Gaps = 38/531 (7%)

Query: 56  VQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLR 115
           + +  P + P   + S P  P+   L   +  I R           QW   + +  ++ +
Sbjct: 6   LSRIKPRHRPKGSSSSLP--PRINHLVSDVIQILR------TSKTHQWQDPLESRFAESK 57

Query: 116 RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVP 175
            V  D+   V+   ++  L  KFF WA  +              +  S + +  A   + 
Sbjct: 58  VVVSDVAHFVIDRVHDAELGLKFFDWASTR-------------PFSCSLDGV--AHSSLL 102

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK-DLV 234
           +L+ S     E+  +LE M+    KP   A++A+I   A   +LD  L+++  +++    
Sbjct: 103 KLLASYRVFPEIELVLENMKAQHLKPTREAFSALILAYAESGSLDRALQLFHTVREMHNC 162

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKE----NGILIDRAIYGVLIEGLVGEGKVG 290
               +A   L+ GL K G+V    +L+ +M +     G ++D     ++++GL   GK+ 
Sbjct: 163 FPTFVASNLLLNGLVKSGKVDVALQLYDKMLQTDDGTGAVVDNYTTSIMVKGLCNLGKIE 222

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           +   L+K          +  YN II G C+      A +         + P   T   L+
Sbjct: 223 EGRRLIKHRWGKCCVPHVVFYNMIIDGYCKKGDLQCATRALNELKMKGVLPTVETYGALI 282

Query: 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELK----- 405
               + G  +   +LL +M     ++     K F  ++  E +  +  +  E L+     
Sbjct: 283 NGFCKAGEFEAVDQLLTEMAARGLNMNV---KVFNNVIDAEYKYGLVTEAAEMLRRMAEM 339

Query: 406 GKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
           G G   +  YNI++    + G +++A  L  K +   L  N  S++  +  + + GD ++
Sbjct: 340 GCG-PDITTYNIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTPLMHAYCKKGDYVK 398

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A     +I E+ +   + +Y     G+   GEID A+M VR+ +      P    Y + +
Sbjct: 399 ASGMLFRIAEIGEKSDLVSYGAFIHGVVVAGEIDVALM-VREKMMEKGVFPDAQIYNILM 457

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
             +C+ G    +  +L+EM      P+  + + +I G  ++G L+EA K+F
Sbjct: 458 SGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIKIF 508



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 103/480 (21%), Positives = 198/480 (41%), Gaps = 37/480 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR-------------------I 184
           K KG      +Y AL     +   F A DQ+   M ++G                    +
Sbjct: 267 KMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEYKYGLV 326

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  E+L +M    C PD+  Y  MI        ++    + E+ K+  +  +  +Y  L
Sbjct: 327 TEAAEMLRRMAEMGCGPDITTYNIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTPL 386

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           +   CK G  V+   +   + E G   D   YG  I G+V  G++  A  + + +++ G 
Sbjct: 387 MHAYCKKGDYVKASGMLFRIAEIGEKSDLVSYGAFIHGVVVAGEIDVALMVREKMMEKGV 446

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D  IYN ++ GLC+  +      L    +  ++ PD      L+      G +D   K
Sbjct: 447 FPDAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIK 506

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
           +   +  ++  V   +  +   + G  K  ++  AL    E+    ++     Y+ ++  
Sbjct: 507 IFKVI--IRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSVHHAPDEYTYSTVIDG 564

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
            ++  ++  AL +FG+M     + N ++++  I    +  D++ A +  + +     VP+
Sbjct: 565 YVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFDLVPN 624

Query: 482 VAAYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVAS------GPTEFKYALTILHVCR 530
           V  Y  L  G  K G+ + A     +ML+  CL N A+      G T    +  ++    
Sbjct: 625 VVTYTTLVGGFFKAGKPERATSIFELMLMNGCLPNDATFHYLINGLTNTATSPVLIEEKD 684

Query: 531 SGEAEK--IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           S E E+  I++    M  +G        +++I  +CKHGT++ A+ + T +  +  L ++
Sbjct: 685 SKENERSLILDFFTMMLLDGWDQVIAAYNSVIVCLCKHGTVDTAQLLLTKMLTKGFLIDS 744



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/417 (20%), Positives = 184/417 (44%), Gaps = 28/417 (6%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI E  E+LEK +     P+ F+YT ++     + +      +   + +   ++D+++Y
Sbjct: 359 GRIEEADELLEKAKERGLLPNKFSYTPLMHAYCKKGDYVKASGMLFRIAEIGEKSDLVSY 418

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
              I G+   G +     +  +M E G+  D  IY +L+ GL  +G++     LL +++D
Sbjct: 419 GAFIHGVVVAGEIDVALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEMLD 478

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              + D+ ++ ++I G  R  + D+A K+F+V ++  + P     N ++    + G+M +
Sbjct: 479 RNVQPDVYVFATLIDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTD 538

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYNIL 418
               L +M  +    A D   +   + G  K+  +  AL +F ++ K K   +V  Y  L
Sbjct: 539 ALSCLNEMNSVHH--APDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSL 596

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    +  ++ +A  +F  M+  +L  N ++++  +    ++G    A      ++    
Sbjct: 597 INGFCKKADMIRAEKVFSGMKSFDLVPNVVTYTTLVGGFFKAGKPERATSIFELMLMNGC 656

Query: 479 VPSVAAYNCLTKGLCKIGE------------------IDAAMMLVRDCLGNVASGPTEFK 520
           +P+ A ++ L  GL                       +D   M++ D    V +      
Sbjct: 657 LPNDATFHYLINGLTNTATSPVLIEEKDSKENERSLILDFFTMMLLDGWDQVIAA----- 711

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
           Y   I+ +C+ G  +    +L +M  +G   + V  +A++ G+C  G  +E R + +
Sbjct: 712 YNSVIVCLCKHGTVDTAQLLLTKMLTKGFLIDSVCFTALLHGLCHKGKSKEWRNIIS 768



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 136/314 (43%), Gaps = 39/314 (12%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           ++S++  L   + F +   + E      L P     + L++  AE G +D   +L   + 
Sbjct: 98  HSSLLKLLASYRVFPEIELVLENMKAQHLKPTREAFSALILAYAESGSLDRALQLFHTVR 157

Query: 371 KLKFS----VAADLEKFFEFLVGKEERIMMALDVFEEL----KGKGYSSVPIY--NILMG 420
           ++       VA++L      LV K  ++ +AL +++++     G G + V  Y  +I++ 
Sbjct: 158 EMHNCFPTFVASNL--LLNGLV-KSGKVDVALQLYDKMLQTDDGTG-AVVDNYTTSIMVK 213

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L  +G++++   L     G     + + +++ I  + + GD+  A    N++     +P
Sbjct: 214 GLCNLGKIEEGRRLIKHRWGKCCVPHVVFYNMIIDGYCKKGDLQCATRALNELKMKGVLP 273

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRD-----------CLGNVASGPTEFKYALTILHVC 529
           +V  Y  L  G CK GE +A   L+ +              NV     E+KY L      
Sbjct: 274 TVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDA--EYKYGLV----- 326

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
                 +  E+L  M + GC P+    + +I+  CK G +EEA ++    +ER LL   N
Sbjct: 327 -----TEAAEMLRRMAEMGCGPDITTYNIMINFSCKGGRIEEADELLEKAKERGLL--PN 379

Query: 590 TIVYDEILIEHMKK 603
              Y  ++  + KK
Sbjct: 380 KFSYTPLMHAYCKK 393



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 84/208 (40%), Gaps = 41/208 (19%)

Query: 129 ENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAA---------DQVPEL 177
           +++ + A K F    K K +K N  +Y +L   +C  + ++ RA          D VP +
Sbjct: 568 QHDMSSALKMFGQMMKHK-FKPNVITYTSLINGFC-KKADMIRAEKVFSGMKSFDLVPNV 625

Query: 178 MD---------SQGRIAEMLEILEKMRRNLCKPD--VFAY-------TAMIRVLAAERN- 218
           +            G+      I E M  N C P+   F Y       TA   VL  E++ 
Sbjct: 626 VTYTTLVGGFFKAGKPERATSIFELMLMNGCLPNDATFHYLINGLTNTATSPVLIEEKDS 685

Query: 219 ----LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
                   L  +  M  D  +  + AY ++I+ LCK G V     L  +M   G LID  
Sbjct: 686 KENERSLILDFFTMMLLDGWDQVIAAYNSVIVCLCKHGTVDTAQLLLTKMLTKGFLIDSV 745

Query: 275 IYGVLIEGLVGEGKVGK-----ACDLLK 297
            +  L+ GL  +GK  +     +CDL K
Sbjct: 746 CFTALLHGLCHKGKSKEWRNIISCDLNK 773


>gi|224056475|ref|XP_002298874.1| predicted protein [Populus trichocarpa]
 gi|222846132|gb|EEE83679.1| predicted protein [Populus trichocarpa]
          Length = 948

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/471 (23%), Positives = 203/471 (43%), Gaps = 22/471 (4%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEM 187
           GY     +YN +     +   ++AA  + + M+S+G                   R A+ 
Sbjct: 5   GYVPTIVTYNTILNWCCKKGRYKAASDLIDRMESKGIEADVCTYNMLIDDLCKNNRSAKG 64

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
             +L+KMR+ +  P+ F Y  +I  L  ER +    RV+ EM    +  + + Y  LI G
Sbjct: 65  YLLLKKMRKRMIAPNEFTYNTLINGLMKERKIGGATRVFNEMLMLNLSPNRVTYNILIDG 124

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            C  G   +   L   M+  G+  D   YG L+ GL    K   A  L++ +  SG    
Sbjct: 125 HCDCGNFEQALRLLDVMEAKGLRPDEVNYGALLSGLSKLAKFDIAKSLMERIRMSGMVVG 184

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
              Y ++I GLC+    D++ +L ++  +D  +PD  T + L+    + G++ N  +++ 
Sbjct: 185 YRAYTAMIDGLCKHGLLDESLQLLDMMFKDGASPDIITFSVLINGFCKAGKIKNAKEVIC 244

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
           +M K   +    +     +   K+  I  A   +  +   G+     I N+L+ +L   G
Sbjct: 245 KMFKAGLAPNYVIYATLIYNSCKKGDITEAFRNYATMTRTGHDVDYFICNVLISSLCRAG 304

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            V +A      M  ++L  NS++F   I  +   GD L+A    +++I++   PS   Y 
Sbjct: 305 RVAEAEDFMRHMSTIDLAPNSITFDCIINGYGILGDALKAFSMFDEMIKLGHCPSHFTYG 364

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L KGLCK G +  A  L+   L ++ +      Y   +   C+ G+    + +  EM Q
Sbjct: 365 SLLKGLCKGGNLREAKKLLYK-LHHIPAAVDTNIYNTILSETCKRGKLSDAVALFGEMVQ 423

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
               P+    + I++G+ + G +  A   F     R  L+  N ++Y  + 
Sbjct: 424 FNVLPDSHTYAIILAGLSRKGKMVPALLFFEKALARGTLS-PNKVMYTSLF 473



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 184/413 (44%), Gaps = 13/413 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P  F Y ++++ L    NL    ++  ++       D   Y T++   CK G++     L
Sbjct: 358 PSHFTYGSLLKGLCKGGNLREAKKLLYKLHHIPAAVDTNIYNTILSETCKRGKLSDAVAL 417

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL-KDLVDSGYRADLGIYNSIIGGLC 319
           F EM +  +L D   Y +++ GL  +GK+  A     K L       +  +Y S+  GL 
Sbjct: 418 FGEMVQFNVLPDSHTYAIILAGLSRKGKMVPALLFFEKALARGTLSPNKVMYTSLFDGLF 477

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +V Q + A  ++E      + PD   +N +L   + MG+M+   KL  +M+    S+   
Sbjct: 478 KVGQSNAASYIYEEMEHKGINPDTIAINAVLDGYSRMGKMEKVEKLFIKMQS--GSLTPS 535

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYS--SVPIYNILMGALLEIGEVKKALYLF 435
           L  +   L G  K++ ++     +  +   G S   +  ++I++G L + G +     + 
Sbjct: 536 LATYNILLHGYSKKKDLLKCSKFYNIMTRMGISPDKLTCHSIILG-LCKSGMLDVGFKML 594

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            KM   +  V+ L+ ++ I    E+  + +A +  N    +  +P V  YN +  GL + 
Sbjct: 595 KKMIMEDTLVDQLTLNMLITNSCETDKMGKAFDLLNIKNLLGIIPDVNTYNAIFTGLNRA 654

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
             +  + +L+ D L    + PT  +Y   I  +CR G+ +    + +EM   G    +V 
Sbjct: 655 SALRESHLLLHDMLERGIT-PTSTQYISLINGMCRMGDIQGAFRLKDEMEAIGVSSWDVA 713

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADL 608
            SA++ G+ + G +EEA  V   + +++L+    T       + HM  K A L
Sbjct: 714 ESAMVRGLAQCGKVEEAMLVLDCMLQKRLIPTVATFT----TLMHMLCKKAKL 762



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 150/328 (45%), Gaps = 9/328 (2%)

Query: 170 AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
           A + V +     G++ ++ ++  KM+     P +  Y  ++   + +++L  C + +  M
Sbjct: 503 AINAVLDGYSRMGKMEKVEKLFIKMQSGSLTPSLATYNILLHGYSKKKDLLKCSKFYNIM 562

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
            +  +  D +   ++I+GLCK G +  G ++ ++M     L+D+    +LI       K+
Sbjct: 563 TRMGISPDKLTCHSIILGLCKSGMLDVGFKMLKKMIMEDTLVDQLTLNMLITNSCETDKM 622

Query: 290 GKACDLL--KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
           GKA DLL  K+L+  G   D+  YN+I  GL R     +++ L    ++  + P  +   
Sbjct: 623 GKAFDLLNIKNLL--GIIPDVNTYNAIFTGLNRASALRESHLLLHDMLERGITPTSTQYI 680

Query: 348 PLLVCCAEMGRMDNFFKLLAQMEKLKFS---VAADLEKFFEFLVGKEERIMMALDVFEEL 404
            L+     MG +   F+L  +ME +  S   VA           GK E  M+ LD    L
Sbjct: 681 SLINGMCRMGDIQGAFRLKDEMEAIGVSSWDVAESAMVRGLAQCGKVEEAMLVLDCM--L 738

Query: 405 KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
           + +   +V  +  LM  L +  ++ +AL L GKM    ++++ +++++ I      GD L
Sbjct: 739 QKRLIPTVATFTTLMHMLCKKAKLSEALKLRGKMALYGVKLDVVAYNVLISGLCADGDAL 798

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGL 492
            A   + ++ E    P+   Y  L   +
Sbjct: 799 AAFNLYEEMKERGLWPNTTTYCTLIDAI 826



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 175/408 (42%), Gaps = 16/408 (3%)

Query: 178 MDSQGRIAEMLEILEK-MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           +  +G++   L   EK + R    P+   YT++   L      +A   ++EEM+   +  
Sbjct: 440 LSRKGKMVPALLFFEKALARGTLSPNKVMYTSLFDGLFKVGQSNAASYIYEEMEHKGINP 499

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D +A   ++ G  + G++ +  +LF +M+   +    A Y +L+ G   +  + K     
Sbjct: 500 DTIAINAVLDGYSRMGKMEKVEKLFIKMQSGSLTPSLATYNILLHGYSKKKDLLKCSKFY 559

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             +   G   D    +SII GLC+    D  +K+ +  + +D   D  T+N L+    E 
Sbjct: 560 NIMTRMGISPDKLTCHSIILGLCKSGMLDVGFKMLKKMIMEDTLVDQLTLNMLITNSCET 619

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG-------KEERIMMALDVFEELKGKGY 409
            +M   F LL  ++ L   +  D+  +     G       +E  +++  D+ E  +G   
Sbjct: 620 DKMGKAFDLL-NIKNL-LGIIPDVNTYNAIFTGLNRASALRESHLLLH-DMLE--RGITP 674

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
           +S   Y  L+  +  +G+++ A  L  +M  + +    ++ S  ++   + G + EA   
Sbjct: 675 TSTQ-YISLINGMCRMGDIQGAFRLKDEMEAIGVSSWDVAESAMVRGLAQCGKVEEAMLV 733

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
            + +++   +P+VA +  L   LCK  ++  A+ L R  +           Y + I  +C
Sbjct: 734 LDCMLQKRLIPTVATFTTLMHMLCKKAKLSEALKL-RGKMALYGVKLDVVAYNVLISGLC 792

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVI-CSAIISGMCKHGTLEEARKVF 576
             G+A     +  EM + G  PN    C+ I +     G +EE   V+
Sbjct: 793 ADGDALAAFNLYEEMKERGLWPNTTTYCTLIDAISTNEGEVEERLLVY 840



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 145/339 (42%), Gaps = 12/339 (3%)

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M+ +G +     Y  ++     +G+   A DL+  +   G  AD+  YN +I  LC+  +
Sbjct: 1   MEGSGYVPTIVTYNTILNWCCKKGRYKAASDLIDRMESKGIEADVCTYNMLIDDLCKNNR 60

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS---VAADL 380
             K Y L +   +  +AP+  T N L+    +  ++    ++  +M  L  S   V  ++
Sbjct: 61  SAKGYLLLKKMRKRMIAPNEFTYNTLINGLMKERKIGGATRVFNEMLMLNLSPNRVTYNI 120

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMR 439
                   G  E+ +  LDV E    KG     + Y  L+  L ++ +   A  L  ++R
Sbjct: 121 LIDGHCDCGNFEQALRLLDVME---AKGLRPDEVNYGALLSGLSKLAKFDIAKSLMERIR 177

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              + V   +++  I    + G + E+ +  + + +    P +  ++ L  G CK G+I 
Sbjct: 178 MSGMVVGYRAYTAMIDGLCKHGLLDESLQLLDMMFKDGASPDIITFSVLINGFCKAGKIK 237

Query: 500 AAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
            A  ++  C +      P    YA  I + C+ G+  +       MT+ G   +  IC+ 
Sbjct: 238 NAKEVI--CKMFKAGLAPNYVIYATLIYNSCKKGDITEAFRNYATMTRTGHDVDYFICNV 295

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +IS +C+ G + EA     ++    L    N+I +D I+
Sbjct: 296 LISSLCRAGRVAEAEDFMRHMSTIDL--APNSITFDCII 332



 Score = 42.4 bits (98), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 100/244 (40%), Gaps = 37/244 (15%)

Query: 163 SRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
           + N +F   ++   L +S   + +MLE      R +  P    Y ++I  +    ++   
Sbjct: 643 TYNAIFTGLNRASALRESHLLLHDMLE------RGI-TPTSTQYISLINGMCRMGDIQGA 695

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
            R+ +EM+   V +  +A   ++ GL + G+V     +   M +  ++   A +  L+  
Sbjct: 696 FRLKDEMEAIGVSSWDVAESAMVRGLAQCGKVEEAMLVLDCMLQKRLIPTVATFTTLMHM 755

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           L  + K+ +A  L   +   G + D+  YN +I GLC       A+ L+E   +  L P+
Sbjct: 756 LCKKAKLSEALKLRGKMALYGVKLDVVAYNVLISGLCADGDALAAFNLYEEMKERGLWPN 815

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
            +T                +  L+  +   +  V              EER+++ L+ FE
Sbjct: 816 TTT----------------YCTLIDAISTNEGEV--------------EERLLVYLEQFE 845

Query: 403 ELKG 406
           +L G
Sbjct: 846 KLVG 849


>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 892

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 118/461 (25%), Positives = 207/461 (44%), Gaps = 27/461 (5%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E  E+ ++M+ +   PDV++Y+ +I     +  +D    V++EM+   +  ++ +Y
Sbjct: 294 GILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSY 353

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G CK GRV +  E+F EMK +GIL D   Y +LI+G   +G +  A    +++  
Sbjct: 354 SILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTS 413

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-VCCAEMGRMD 360
           + +      Y S+I G  + KQF  A K F +  +  + PD    N +L + C    R  
Sbjct: 414 NNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIYC----RKP 469

Query: 361 NFFKLLAQMEKLKFS-VAADLEKFFEFLV-----GKEERIMMALDVFEELKGKGYSSVPI 414
           +F K LA  EK + + V  +   + EF+         E+ +  L V   LK      V  
Sbjct: 470 DFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVM--LKRNVLPDVVN 527

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y+ L+    +    +KA+ LF KM  + +  N  +++I I   +    +  A      + 
Sbjct: 528 YSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMK 587

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI---LHVCRS 531
           E    P   AY  L  G C  GE+  A  L  D +      P    Y   I   L + ++
Sbjct: 588 ESRVYPDQIAYTSLVAGFCNTGEMTRARALF-DEMSREGCSPNVVTYTCFINEYLKLNKN 646

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
            +A K+ E   +M + G  P++++ + +I+  C  G +  A  +F  +++    T  N +
Sbjct: 647 NQAHKLYE---KMKERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCT-PNVV 702

Query: 592 VYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKLLSS 632
           +Y  ++  ++K    D          L  +++AKG   L S
Sbjct: 703 MYTCLINSYIKLNKRDQAEK------LYEEMRAKGLSRLCS 737



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 178/395 (45%), Gaps = 6/395 (1%)

Query: 193 KMRRNLCKPDV----FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++ +NLC+ +       + A+I  L     LD    V++EMK   +  DV +Y  LI G 
Sbjct: 266 RLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGF 325

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C+ GRV +  E+F+EM+ +GIL +   Y +LI+G   EG+V KA ++ +++ +SG   D+
Sbjct: 326 CRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDV 385

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             Y+ +I G CR    D A K +E    ++ +P       L+    +  +  N  K    
Sbjct: 386 YSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRI 445

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGE 427
           M+KL              +  ++     AL + E+ +  G    P  YN  +  +     
Sbjct: 446 MQKLGMWPDTIACNHILSIYCRKPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSV 505

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
            +KAL L   M   N+  + +++S  I C  +  +  +A     K+ ++    +V  Y  
Sbjct: 506 PEKALQLLPVMLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTI 565

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L        ++D A  L +  +      P +  Y   +   C +GE  +   + +EM++E
Sbjct: 566 LINLFISDCKMDVAYRLFKG-MKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSRE 624

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           GC PN V  +  I+   K     +A K++  ++ER
Sbjct: 625 GCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKER 659



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 103/451 (22%), Positives = 194/451 (43%), Gaps = 11/451 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ +  E+ ++MR +   P++++Y+ +I     E  +D  L V+EEMK   +  DV +
Sbjct: 328 KGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYS 387

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G C+ G +    + + EM  N        Y  LI+G     +   A    + + 
Sbjct: 388 YSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQ 447

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D    N I+   CR   F+KA  L E   ++ +  +  + N  +         +
Sbjct: 448 KLGMWPDTIACNHILSIYCRKPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPE 507

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYNI 417
              +LL  M  LK +V  D+  +   +    +R+    A+ +F ++   G + +V  Y I
Sbjct: 508 KALQLLPVM--LKRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTI 565

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+   +   ++  A  LF  M+   +  + ++++  +     +G++  A    +++    
Sbjct: 566 LINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREG 625

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P+V  Y C      K+ + + A  L    +      P +  Y + I   C +GE  + 
Sbjct: 626 CSPNVVTYTCFINEYLKLNKNNQAHKLYEK-MKERGVYPDQILYTMLIAAFCNTGEMNRA 684

Query: 538 IEVLNEMTQEG-CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL--LTEANTIVYD 594
             + +EM QEG C PN V+ + +I+   K    ++A K++  +R + L  L  +   V +
Sbjct: 685 EALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAEKLYEEMRAKGLSRLCSSEGSVSE 744

Query: 595 EILIEHMKKKTADLVLSGLKFFGLESKLKAK 625
                H   KT    L G    GL+ + + K
Sbjct: 745 SWCCRHQVLKTGK--LGGRAKQGLDWRFQVK 773



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 7/175 (4%)

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE----SGDILEACECHN 471
           N L+  L+E   V     LF  +       N  +++I +         S DI  A E   
Sbjct: 175 NFLLKCLVEDNRVDGVRLLFEVLIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILG 234

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-CLGNVASGPTEFKYALTILHVCR 530
           KI    + P+V  Y    KGLCK+G    A  L+++ C  N       F     I  +C+
Sbjct: 235 KIYMSGETPNVVTYGTYIKGLCKVGLFGVAWRLIQNLCRKNQPLNNHCFN--AVIYGLCQ 292

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
            G  ++  EV  EM   G  P+    S +I G C+ G +++A +VF  +R   +L
Sbjct: 293 GGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGIL 347



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/194 (19%), Positives = 84/194 (43%), Gaps = 6/194 (3%)

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           ++++L+        ++ A Y+F + +   +E+N +S +  ++C VE   +         +
Sbjct: 138 VFDMLIKVFASNSMLEHANYVFVRAKDDGIELNIMSCNFLLKCLVEDNRVDGVRLLFEVL 197

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV---ASGPTEFKYALTILHVCR 530
           I+    P++  Y  +    C+       +    + LG +      P    Y   I  +C+
Sbjct: 198 IKFGPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMSGETPNVVTYGTYIKGLCK 257

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            G       ++  + ++  P N    +A+I G+C+ G L+EA +VF  ++   +L +  +
Sbjct: 258 VGLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYS 317

Query: 591 IVYDEILIEHMKKK 604
                ILI+   +K
Sbjct: 318 Y---SILIDGFCRK 328


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 208/460 (45%), Gaps = 54/460 (11%)

Query: 183 RIAEMLEIL-EKMRRNLCKPDVFAYTAMIRVLAAER---NLDACLRVWEEMKKDLVEADV 238
           R AE L+IL  +M    C PDVF+Y  +++ L ++R     D  LR+  E    +   + 
Sbjct: 158 RTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAE-GGAVCLPNA 216

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           +AY T+I G  K G V +  +LF EM + GI  D + Y  ++  L     + KA  +L+ 
Sbjct: 217 VAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQ 276

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +VD G   D   YNS+I G     Q+ +A ++ +      + PD  T+N L+    + G+
Sbjct: 277 MVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGK 336

Query: 359 M----DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYS-S 411
           +    D F  +  + +K       D+  +   L G   +  ++   ++F  +   G +  
Sbjct: 337 IKDARDVFDSMAMKGQK------TDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPD 390

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
             I+N+L+ A  + G + +A  +F +MR   +E + +++S  I      G + +A E  N
Sbjct: 391 SHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFN 450

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC---------------------LG 510
           ++I+    PS++ Y+ L +G C  G++  A  LV                        LG
Sbjct: 451 QMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLG 510

Query: 511 NVASGPTEFKYALTI-LH------------VCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
            V      F + ++I LH             C  G+ E  + V + M   G  PN V+  
Sbjct: 511 RVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYG 570

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            +++G CK G ++E   +F  +  + +  + +T +Y+ IL
Sbjct: 571 TLVNGYCKVGRIDEGLSLFREILHKGI--KPSTTLYNIIL 608



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 197/418 (47%), Gaps = 13/418 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + ++ E+   M  +   PD   +  +I+  A    LD    ++ EM++  VE DV+
Sbjct: 368 TKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVV 427

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I  LC+ G++    E F +M + G+    + Y  LI+G    G + KA DL+  +
Sbjct: 428 TYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQM 487

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           ++ G R D+G +N II  LC++ +   A  +F+ T+   L P+    N L+     +G+M
Sbjct: 488 MNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKM 547

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           +N  ++   M  +   +  ++  +   + G  K  RI   L +F E+  KG   S  +YN
Sbjct: 548 ENALRVFDVM--VSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYN 605

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           I++  L + G    A   F +M    + ++  ++SI +    ++    EA     ++  M
Sbjct: 606 IILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAM 665

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA-SG--PTEFKYALTILHVCRSGE 533
           +    +   N +  G+ +I  ++ A    +D   +++ SG  P+   Y++ + ++ + G 
Sbjct: 666 NVKIDITTLNIMIAGMFQIRRVEEA----KDLFASISRSGLVPSVVTYSIMMTNLIKEGL 721

Query: 534 AEKIIEVLNEMTQEGC-PPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            E+  ++ + M   GC  PN  + + ++  + +   +  A    + + ER    + +T
Sbjct: 722 VEEADDMFSSMENAGCEQPNSQLLNHVVRELLEKREIVRAGTYLSKIDERSFSLDHST 779



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 106/482 (21%), Positives = 212/482 (43%), Gaps = 29/482 (6%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            KG   +  +YN+L Y  S    ++ A +V + M SQG +                PDV 
Sbjct: 279 DKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGIL----------------PDVV 322

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
              +++  L     +     V++ M     + D+ +Y  ++ G    G +V   ELF  M
Sbjct: 323 TLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLM 382

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
             +GI  D  I+ VLI+     G + +A  +  ++ + G   D+  Y+++I  LCR+ + 
Sbjct: 383 LSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKM 442

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           D A + F   +   +AP  ST + L+      G +     L+ QM  +   +  D+   F
Sbjct: 443 DDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQM--MNKGMRPDI-GCF 499

Query: 385 EFLVG---KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
            F++    K  R+M A ++F+     G + +V +YN LM     +G+++ AL +F  M  
Sbjct: 500 NFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVS 559

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             ++ N + +   +  + + G I E      +I+     PS   YN +  GL + G    
Sbjct: 560 AGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVP 619

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A +   + +         + Y++ +  + ++  +++ I +  E+       +    + +I
Sbjct: 620 AKVKFHE-MTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMI 678

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK---KTADLVLSGLKFFG 617
           +GM +   +EEA+ +F ++    L+   + + Y  ++   +K+   + AD + S ++  G
Sbjct: 679 AGMFQIRRVEEAKDLFASISRSGLV--PSVVTYSIMMTNLIKEGLVEEADDMFSSMENAG 736

Query: 618 LE 619
            E
Sbjct: 737 CE 738



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 94/450 (20%), Positives = 189/450 (42%), Gaps = 22/450 (4%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+G   + ++YN +   L +    RA D+                IL +M      PD +
Sbjct: 244 QRGISPDLSTYNCVVNALCKA---RAMDKAEA-------------ILRQMVDKGVLPDNW 287

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y ++I   ++       +RV ++M    +  DV+   +L+  LCK G++    ++F  M
Sbjct: 288 TYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSM 347

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              G   D   Y +++ G   +G +    +L   ++  G   D  I+N +I    +    
Sbjct: 348 AMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGML 407

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           D+A  +F    +  + PD  T + ++     +G+MD+  +   QM  +   VA  +  + 
Sbjct: 408 DRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQM--IDQGVAPSISTYH 465

Query: 385 EFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
             + G      ++ A D+  ++  KG    +  +N ++  L ++G V  A  +F     +
Sbjct: 466 FLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISI 525

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            L  N + ++  +  +   G +  A    + ++     P+V  Y  L  G CK+G ID  
Sbjct: 526 GLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEG 585

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           + L R+ L +    P+   Y + +  + ++G         +EMT+ G   +    S ++ 
Sbjct: 586 LSLFREIL-HKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLG 644

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           G+ K+   +EA  +F  L    +  +  T+
Sbjct: 645 GLFKNSCSDEAILLFKELHAMNVKIDITTL 674



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 2/105 (1%)

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L +GLC+      A+ ++   + ++   P  F Y + +  +C   ++ +  E+L  M + 
Sbjct: 149 LLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEG 208

Query: 548 G--CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           G  C PN V  + +I G  K G + +A  +F  + +R +  + +T
Sbjct: 209 GAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLST 253


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/450 (23%), Positives = 206/450 (45%), Gaps = 21/450 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + R++E L+   +M    C+P+V  +T ++  L  E  +   + + + M +D ++   + 
Sbjct: 162 EDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y T++ G+CK G  V    L R+M+E + I+ +  IY  +I+ L  +G+   A +L  ++
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            + G   DL  YNS+I G C   ++  A +L +  ++  ++PD  T N L+    + G+ 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
               +L  +M  L   +  +   +   + G  K++R+  A D+F  +  KG S  V  + 
Sbjct: 342 FEAAELYDEM--LPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFT 399

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+        +   + L  +M    L  N+++++  I      GD+  A +   ++I  
Sbjct: 400 TLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISS 459

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC----LGNVASGPTE------FKYALTIL 526
              P +   N L  GLC  G++  A+ + +      +   AS P          Y + I 
Sbjct: 460 GVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILIC 519

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
            +   G+  +  E+  EM   G  P+ +  S++I G+CK   L+EA ++F ++  +    
Sbjct: 520 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSF-- 577

Query: 587 EANTIVYDEILIEHMKKKTADLVLSGLKFF 616
             N + ++ ++  + K    D    GL+ F
Sbjct: 578 SPNVVTFNTLINGYCKAGRVD---DGLELF 604



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 193/431 (44%), Gaps = 22/431 (5%)

Query: 178 MDSQGRIAEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           M  +G     L +L KM   +   P+V  Y+A+I  L  +        ++ EM++  +  
Sbjct: 229 MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFP 288

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D+  Y ++I+G C  GR     +L +EM E  I  D   Y  LI   V EGK  +A +L 
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELY 348

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            +++  G   +   YNS+I G C+  + D A  +F +      +PD  T   L+      
Sbjct: 349 DEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGA 408

Query: 357 GRMDNFFKLLAQMEK---LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SV 412
            R+D+  +LL +M +   +  +V  +       LVG    +  ALD+ +++   G    +
Sbjct: 409 KRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGD---LNAALDLSQQMISSGVCPDI 465

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS-----------LSFSIAIQCHVESG 461
              N L+  L + G++K AL +F  M+   +++++           L+++I I   +  G
Sbjct: 466 VTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEG 525

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID-AAMMLVRDCLGNVASGPTEFK 520
             LEA E + ++     VP    Y+ +  GLCK   +D A  M V   +G+ +  P    
Sbjct: 526 KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVS--MGSKSFSPNVVT 583

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           +   I   C++G  +  +E+  EM + G   + +I   +I G  K G +  A  +F  + 
Sbjct: 584 FNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMI 643

Query: 581 ERKLLTEANTI 591
              +  +  TI
Sbjct: 644 SSGVYPDTITI 654



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 192/413 (46%), Gaps = 19/413 (4%)

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
           ++ + +KM R   + D++++  +I+   +   L   L  + ++ K  +  DV+ + TL+ 
Sbjct: 98  VISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLH 157

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC   RV    + F +M E     +   +  L+ GL  EG++ +A  LL  +++ G + 
Sbjct: 158 GLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQP 217

Query: 307 DLGIYNSIIGGLCR----VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
               Y +I+ G+C+    V   +   K+ EV+    + P+    + ++    + GR  + 
Sbjct: 218 TQITYGTIVDGMCKKGDTVSALNLLRKMEEVS---HIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILM 419
             L  +M++    +  DL  +   +VG     R   A  + +E+  +  S  V  YN L+
Sbjct: 275 QNLFTEMQEK--GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALI 332

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            A ++ G+  +A  L+ +M    +  N+++++  I    +  D L+A E    ++     
Sbjct: 333 NAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQ-DRLDAAEDMFYLMATKGC 391

Query: 480 -PSVAAYNCLTKGLCKIGEIDAAMMLVRDC--LGNVASGPTEFKYALTILHVCRSGEAEK 536
            P V  +  L  G C    ID  M L+ +    G VA+  T   Y   I   C  G+   
Sbjct: 392 SPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVT---YNTLIHGFCLVGDLNA 448

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
            +++  +M   G  P+ V C+ ++ G+C +G L++A ++F  +++ K+  +A+
Sbjct: 449 ALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDAS 501



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 76/153 (49%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G+  E  E+ E+M      PD   Y++MI  L  +  LD   +++  M       +V+
Sbjct: 523 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVV 582

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            + TLI G CK GRV  G ELF EM   GI+ D  IY  LI G    G +  A D+ +++
Sbjct: 583 TFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEM 642

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
           + SG   D     +++ G    ++ ++A  + E
Sbjct: 643 ISSGVYPDTITIRNMLTGFWSKEELERAVAMLE 675



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 110/268 (41%), Gaps = 35/268 (13%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDS------------------QGRI 184
           ++G   N  +YN L   +CL   +L  A D   +++ S                   G++
Sbjct: 423 RRGLVANTVTYNTLIHGFCLV-GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 481

Query: 185 AEMLEILEKMRR-----------NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
            + LE+ + M++           N  +PDV  Y  +I  L  E        ++EEM    
Sbjct: 482 KDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRG 541

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  D + Y ++I GLCK  R+    ++F  M       +   +  LI G    G+V    
Sbjct: 542 IVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGL 601

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           +L  ++   G  AD  IY ++I G  +V   + A  +F+  +   + PD  T+  +L   
Sbjct: 602 ELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNML--- 658

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLE 381
                 +   + +A +E L+ SV   LE
Sbjct: 659 TGFWSKEELERAVAMLEDLQMSVGYQLE 686



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 13/207 (6%)

Query: 397 ALDVFEE-LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A+D+F + L+ +   SV  +  LMG ++ +      + L+ KM    +  +  SF+I I+
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIK 122

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLG 510
           C      +  A     KI ++   P V  +  L  GLC    +  A+     M    C  
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRP 182

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
           NV +      +   +  +CR G   + + +L+ M ++G  P ++    I+ GMCK G   
Sbjct: 183 NVVT------FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 571 EARKVFTNLRERKLLTEANTIVYDEIL 597
            A  +   + E   +   N ++Y  I+
Sbjct: 237 SALNLLRKMEEVSHII-PNVVIYSAII 262


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 206/459 (44%), Gaps = 52/459 (11%)

Query: 183 RIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAER---NLDACLRVWEEMKKDLVEADV 238
           R  E L+IL      L C PDVF+Y+ +++ L  +      D  LR+  E    +   DV
Sbjct: 161 RTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAE-GGAVCSPDV 219

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           +AY T+I G  K G V +  +LF+EM + GI  D   Y  ++  L     + KA   L+ 
Sbjct: 220 VAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQ 279

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +V+ G   +   YN++I G     Q+ +A ++F+   +  + PD  T++ L+    + G+
Sbjct: 280 MVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGK 339

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLV-----GKEERIMMALDVFEELKGKGYS-SV 412
           +     +   M     ++       F + +       +  ++   D+F+ + G G +  +
Sbjct: 340 IKEARDVFDTM-----AMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDI 394

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             +N+L+ A    G + KA+ +F +MR   ++ + +++   I      G + +A E  N+
Sbjct: 395 YTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQ 454

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG---------------------- 510
           +I+    P   AY+CL +G C  G +  A  L+ + +                       
Sbjct: 455 MIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 514

Query: 511 ------------NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
                       NV   PT   Y++ +   C  G+ EK + V + M   G  PN+V+   
Sbjct: 515 VMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGT 574

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +++G CK G ++E   +F  + ++ +  + +TI+Y+ I+
Sbjct: 575 LVNGYCKIGRIDEGLSLFREMLQKGI--KPSTILYNIII 611



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 200/418 (47%), Gaps = 20/418 (4%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + +M ++ + M  +   PD++ +  +I+  A    LD  + ++ EM+   V+ DV+
Sbjct: 371 TKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVV 430

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I  LC+ G++    E F +M + G+  D+  Y  LI+G    G + KA +L+ ++
Sbjct: 431 TYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEI 490

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +++G   D+  ++SII  LC++ +   A  +F++TV   L P     + L+     +G+M
Sbjct: 491 MNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKM 550

Query: 360 DNFFKLLAQMEKLKFSVAADLEK---FFEFLVG---KEERIMMALDVFEELKGKGYS-SV 412
           +   ++   M      V+A +E     +  LV    K  RI   L +F E+  KG   S 
Sbjct: 551 EKALRVFDAM------VSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPST 604

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
            +YNI++  L E G    A   F +M    + +N  +++I ++   ++    EA     +
Sbjct: 605 ILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKE 664

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA-SG--PTEFKYALTILHVC 529
           +  M+   ++   N +  G+ +   ++ A    +D   +++ SG  P    Y++ I ++ 
Sbjct: 665 LRAMNVKINIITLNTMIAGMFQTRRVEEA----KDLFASISRSGLVPCVVTYSIMITNLI 720

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           + G  E+  ++ + M   GC P+  + + ++  + K   +  A    + + ER    E
Sbjct: 721 KEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLE 778



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 110/501 (21%), Positives = 206/501 (41%), Gaps = 74/501 (14%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELM----------------------DSQG 182
           Q+G   +F +Y+++ + L +    RA D+    +                       S G
Sbjct: 247 QRGIPPDFVTYSSVVHALCKA---RAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTG 303

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           +  E + + ++MRR+   PDV   + ++  L     +     V++ M       +V +Y 
Sbjct: 304 QWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYT 363

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++ G    G +V   +LF  M  +GI  D   + VLI+     G + KA  +  ++ D 
Sbjct: 364 IMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDH 423

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + D+  Y ++I  LCR+ + D A + F   +   +APD    + L+      G +   
Sbjct: 424 GVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKA 483

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
            +L++++  +   +  D+  FF  ++    K  R+M A ++F+     G + +  +Y++L
Sbjct: 484 KELISEI--MNNGMHLDI-VFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSML 540

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           M     +G+++KAL +F  M    +E                                  
Sbjct: 541 MDGYCLVGKMEKALRVFDAMVSAGIE---------------------------------- 566

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P+   Y  L  G CKIG ID  + L R+ L      P+   Y + I  +  +G      
Sbjct: 567 -PNDVVYGTLVNGYCKIGRIDEGLSLFREMLQK-GIKPSTILYNIIIDGLFEAGRTVPAK 624

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIV--- 592
              +EMT+ G   N+   + ++ G+ K+   +EA  +F  LR   +   +   NT++   
Sbjct: 625 VKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGM 684

Query: 593 YDEILIEHMKKKTADLVLSGL 613
           +    +E  K   A +  SGL
Sbjct: 685 FQTRRVEEAKDLFASISRSGL 705



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/378 (20%), Positives = 148/378 (39%), Gaps = 75/378 (19%)

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK-LFEVT 334
           Y +L++      +   A      L+ +G R ++ I N ++ G C  K+ D+A   L   T
Sbjct: 114 YAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDILLHRT 173

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEE 392
            +    PD  + + LL    + G+      LL  M +     + D+  +   + G  KE 
Sbjct: 174 PELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEG 233

Query: 393 RIMMALDVFEELKGKG-------YSSVP-----------------------------IYN 416
            +  A D+F+E+  +G       YSSV                               YN
Sbjct: 234 DVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYN 293

Query: 417 ILMGALLEIGEVKKALYLFGKMR---------GLNLEVNSL------------------- 448
            L+      G+ K+A+ +F +MR          L++ + SL                   
Sbjct: 294 NLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMK 353

Query: 449 -------SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
                  S++I +  +   G +++  +  + ++     P +  +N L K     G +D A
Sbjct: 354 GQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKA 413

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           M++  + + +    P    Y   I  +CR G+ +  +E  N+M  +G  P++     +I 
Sbjct: 414 MIIFNE-MRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQ 472

Query: 562 GMCKHGTLEEARKVFTNL 579
           G C HG+L +A+++ + +
Sbjct: 473 GFCTHGSLLKAKELISEI 490



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           N L KG C+    D A+ ++      +   P  F Y++ +  +C  G++ +  ++L  M 
Sbjct: 150 NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA 209

Query: 546 QEG--CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           + G  C P+ V  S +I G  K G + +A  +F  + +R +
Sbjct: 210 EGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGI 250


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 186/409 (45%), Gaps = 49/409 (11%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
             +L K+ +   +P+V   T +I+ L  +  +   L+  +++       + ++Y TLI G
Sbjct: 127 FSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLING 186

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK G+     +L R +    +  +  +Y  +I+ +     V +A DL  ++V  G   D
Sbjct: 187 LCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPD 246

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  YN++I G C V +   A  LF   + +++ P+  T N L+         D F     
Sbjct: 247 VVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILV---------DGF----- 292

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
                                 KE R+  A +V   +  +G    V  YN LM     + 
Sbjct: 293 ---------------------CKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVK 331

Query: 427 EVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHV----ESGDILEACECHNKIIEMSQVP 480
           EV KA ++F  +  RG+N  ++S S  I   C +    E+ ++ +   C+N I      P
Sbjct: 332 EVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNII------P 385

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  YN L  GLCK+G+I  A+ LV D + +      +  Y   +  +C++ + +K I +
Sbjct: 386 DVVTYNSLIDGLCKLGKISYALKLV-DEMHDRGVPHDKITYNSILDALCKNHQVDKAIAL 444

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           L +M  EG  P+    + ++ G+CK+G LE+AR VF +L  +  + + N
Sbjct: 445 LTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVN 493



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 179/409 (43%), Gaps = 45/409 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+ +  L++L ++   L +P+V  Y  +I  +   + ++    ++ EM    +  DV+ Y
Sbjct: 191 GQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTY 250

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G C  G++    +LF +M    I  +   + +L++G   E ++ +A ++L  ++ 
Sbjct: 251 NALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMK 310

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + D+  YNS++   C VK+ +KA  +F    Q  + P+  + + ++    ++ ++D 
Sbjct: 311 QGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDE 370

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNIL 418
              L  +M     ++  D+  +   + G  K  +I  AL + +E+  +G     I YN +
Sbjct: 371 AMNLFKEMHC--NNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSI 428

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + AL +  +V KA+ L  KM+   ++                                  
Sbjct: 429 LDALCKNHQVDKAIALLTKMKDEGIQ---------------------------------- 454

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVCRSGEAEK 536
            P +  Y  L  GLCK G ++ A ++  D L  G +        Y   I   C  G  ++
Sbjct: 455 -PDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNI---YTAMIQGFCSHGLFDE 510

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
            +++L++M + GC PN V    II  +      ++A K+   +  R L 
Sbjct: 511 SLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRGLF 559



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 85/170 (50%), Gaps = 1/170 (0%)

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
           S + I +IL+    ++G+   +  +  K+  +  E N ++ +  I+     G I +A + 
Sbjct: 105 SDLVILSILINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQF 164

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
           H+K++ +    +  +Y  L  GLCK+G+  AA+ L+R   G +   P    Y   I  +C
Sbjct: 165 HDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQ-PNVVMYNTIIDSMC 223

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           +     +  ++ +EM  +G  P+ V  +A+ISG C  G +++A  +F  +
Sbjct: 224 KVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKM 273


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 188/429 (43%), Gaps = 18/429 (4%)

Query: 178 MDSQGRIAEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           M   G     L +L KM   +  KP+V  Y+A+I  L  +        ++ EM++  +  
Sbjct: 222 MCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISP 281

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           ++  Y  +I G C  GR      L REM E  +  D   + VLI  LV EGK  +A +L 
Sbjct: 282 NLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELY 341

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            +++  G   +   YNS+I G  +  + D A ++F +      +PD  T + L+      
Sbjct: 342 NEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGA 401

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVP 413
            R+D+  KLL +M +    + A+   +   + G  +   +  ALD+ +E+   G   +V 
Sbjct: 402 KRVDDGMKLLHEMSRR--GLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVV 459

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS-----------LSFSIAIQCHVESGD 462
             N L+  L   G++K AL +F  M+   +++++            +++I I   +  G 
Sbjct: 460 TCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGK 519

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
             EA E + ++     VP    YN +  GLCK   +D A  +  D +G+    P    + 
Sbjct: 520 FSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMF-DSMGSKGFSPDVVTFT 578

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             I   C+ G     +EV  EM + G   N +    +I G C+ G +  A  +F  +   
Sbjct: 579 TLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISS 638

Query: 583 KLLTEANTI 591
            +  +  TI
Sbjct: 639 GVYPDTITI 647



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 194/413 (46%), Gaps = 20/413 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + R++E L    +    +CKP+V A+T ++  L  E  +   + + + M +D ++ + + 
Sbjct: 159 EDRVSEALHFFHQ----ICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQIT 214

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y T++ G+CK G  V    L R+M+E + I  +  IY  +I+GL  +G+   A +L  ++
Sbjct: 215 YGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEM 274

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            + G   +L  YN +I G C   ++ +A +L     +  ++PD  T + L+    + G+ 
Sbjct: 275 QEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKF 334

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
               +L  +M  L   +  +   +   + G  K+ R+  A  +F  +  KG S  V  ++
Sbjct: 335 FEAEELYNEM--LPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFS 392

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+        V   + L  +M    L  N+++++  I    + G++  A +   ++I  
Sbjct: 393 ILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISS 452

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAM----MLVRDCLGNVASGPTE------FKYALTIL 526
              P+V   N L  GLC  G++  A+    ++ +  +   AS P          Y + I 
Sbjct: 453 GVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILIC 512

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            +   G+  +  E+  EM   G  P+ +  +++I G+CK   L+EA ++F ++
Sbjct: 513 GLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSM 565



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 103/472 (21%), Positives = 205/472 (43%), Gaps = 62/472 (13%)

Query: 121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS 180
           L+  V+++E    + S   H   + +    N  S+  L  C      F +  ++P  + +
Sbjct: 82  LLGVVVRMERPDVVIS--LHRKMEMRRIPCNIYSFTILIKC------FCSCSKLPFALST 133

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G+I ++             P +  ++ ++  L  E  +   L  + ++ K     +V+A
Sbjct: 134 FGKITKLGF----------HPSLVTFSTLLHGLCVEDRVSEALHFFHQICK----PNVIA 179

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + TL+ GLC+ GRVV    L   M E+G+  ++  YG +++G+   G    A +LL+ + 
Sbjct: 180 FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME 239

Query: 301 D-SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           + S  + ++ IY++II GL +  +   A  LF    +  ++P+  T N ++      GR 
Sbjct: 240 EVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRW 299

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
               +LL +M + K S                                    V  +++L+
Sbjct: 300 SEAQRLLREMFERKMS----------------------------------PDVVTFSVLI 325

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            AL++ G+  +A  L+ +M    +  N+++++  I    +   +  A      +      
Sbjct: 326 NALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCS 385

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDC--LGNVASGPTEFKYALTILHVCRSGEAEKI 537
           P V  ++ L  G C    +D  M L+ +    G VA+  T   Y   I   C+ G     
Sbjct: 386 PDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTIT---YTTLIHGFCQLGNLNAA 442

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           +++L EM   G  PN V C+ ++ G+C +G L++A ++F  +++ K+  +A+
Sbjct: 443 LDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDAS 494



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G+ +E  E+ E+M      PD   Y ++I  L  +  LD   ++++ M       DV+
Sbjct: 516 NEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVV 575

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            + TLI G CK GRV  G E+F EM   GI+ +   Y  LI G    G +  A D+ +++
Sbjct: 576 TFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEM 635

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
           + SG   D     +++ GL   ++  +A +
Sbjct: 636 ISSGVYPDTITIRNMLTGLWSKEELKRAVQ 665



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 30/238 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSR-NNLFRAADQVPELMDS------------------QGRI 184
            ++G   N  +Y  L +   +  NL  A D + E++ S                   G++
Sbjct: 415 SRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKL 474

Query: 185 AEMLEILEKMRR-----------NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
            + LE+ + M++           N  +PDV  Y  +I  L  E        ++EEM    
Sbjct: 475 KDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRG 534

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  D + Y ++I GLCK  R+    ++F  M   G   D   +  LI G    G+VG   
Sbjct: 535 LVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGL 594

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           ++  ++   G  A+   Y ++I G C+V   + A  +F+  +   + PD  T+  +L 
Sbjct: 595 EVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLT 652



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 86/202 (42%), Gaps = 7/202 (3%)

Query: 397 ALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A+D+F  + + +    V  +  L+G ++ +      + L  KM    +  N  SF+I I+
Sbjct: 60  AIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTILIK 119

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
           C      +  A     KI ++   PS+  ++ L  GLC    +  A+             
Sbjct: 120 CFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQ-----ICK 174

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    +   +  +CR G   + + +L+ M ++G  PN++    I+ GMCK G    A  +
Sbjct: 175 PNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNL 234

Query: 576 FTNLRERKLLTEANTIVYDEIL 597
              + E   + + N ++Y  I+
Sbjct: 235 LRKMEEVSRI-KPNVVIYSAII 255



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 55/116 (47%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q R+ E  ++ + M      PDV  +T +I        +   L V+ EM +  + A+ + 
Sbjct: 552 QSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAIT 611

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           Y TLI G C+ G +    ++F+EM  +G+  D      ++ GL  + ++ +A   L
Sbjct: 612 YRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVQCL 667


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 177/368 (48%), Gaps = 8/368 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G  A  L++  KM     K  V  Y+ +I  L  + + D  L ++ EM+   ++ADV+ 
Sbjct: 223 SGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVT 282

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI GLC  G+   G ++ REM    I+ D   +  LI+  V EGK+ +A +L  +++
Sbjct: 283 YSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMI 342

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D   YNS+I G C+     +A ++F++ V     PD  T + L+    +  R+D
Sbjct: 343 TRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVD 402

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNI 417
           +  +L  ++      +  +   +   ++G  +  ++  A ++F+E+  +G   SV  Y I
Sbjct: 403 DGMRLFREISSK--GLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L + GE+ KAL +F KM+   + +    ++I I     +  + +A      + +  
Sbjct: 461 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKG 520

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI-LHVCRSGEAEK 536
             P V  YN +  GLCK G +  A ML R  +      P +F Y + I  H+  SG    
Sbjct: 521 VKPDVVTYNVMIGGLCKKGSLSEADMLFRK-MKEDGCTPDDFTYNILIRAHLGGSGLISS 579

Query: 537 IIEVLNEM 544
            +E++ EM
Sbjct: 580 -VELIEEM 586



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 192/404 (47%), Gaps = 6/404 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR++E + ++++M     +PD+   + +I  L  +  +   L + + M +   + D + 
Sbjct: 153 EGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVT 212

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  ++  LCK G      +LFR+M+E  I      Y ++I+ L  +G    A  L  ++ 
Sbjct: 213 YGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME 272

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G +AD+  Y+S+IGGLC   ++D   K+    +  ++ PD  T + L+    + G++ 
Sbjct: 273 MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLL 332

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
              +L  +M  +   +A D   +   + G  KE  +  A  +F+ +  KG    +  Y+I
Sbjct: 333 EAKELYNEM--ITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI 390

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ +  +   V   + LF ++    L  N+++++  +    +SG +  A E   +++   
Sbjct: 391 LINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 450

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             PSV  Y  L  GLC  GE++ A+ +      +  +      Y + I  +C + + +  
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGI-YNIIIHGMCNASKVDDA 509

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
             +   ++ +G  P+ V  + +I G+CK G+L EA  +F  ++E
Sbjct: 510 WSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 553



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/401 (22%), Positives = 177/401 (44%), Gaps = 2/401 (0%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ + +++ E M ++   P    +  +   +A  +  D  L   + M+ + +E D+    
Sbjct: 50  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            +I   C+  +++    +     + G   D   +  L+ G   EG+V +A  L+  +V+ 
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
             R DL   +++I GLC   +  +A  L +  V+    PD  T  P+L    + G     
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGA 421
             L  +ME+     +          + K+     AL +F E++ KG  + V  Y+ L+G 
Sbjct: 230 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG 289

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L   G+      +  +M G N+  + ++FS  I   V+ G +LEA E +N++I     P 
Sbjct: 290 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD 349

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
              YN L  G CK   +  A  +  D + +    P    Y++ I   C++   +  + + 
Sbjct: 350 TITYNSLIDGFCKENCLHEANQMF-DLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLF 408

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
            E++ +G  PN +  + ++ G C+ G L  A+++F  +  R
Sbjct: 409 REISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR 449



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/421 (22%), Positives = 191/421 (45%), Gaps = 11/421 (2%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PD   ++ ++     E  +   + + + M +     D++   TLI GLC  GRV     
Sbjct: 137 EPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALV 196

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L   M E G   D   YG ++  L   G    A DL + + +   +A +  Y+ +I  LC
Sbjct: 197 LIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLC 256

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +   FD A  LF       +  D  T + L+      G+ D+  K+L +M  +  ++  D
Sbjct: 257 KDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREM--IGRNIIPD 314

Query: 380 LEKFFEFL--VGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFG 436
           +  F   +    KE +++ A +++ E+  +G +   I YN L+    +   + +A  +F 
Sbjct: 315 VVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFD 374

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            M     E + +++SI I  + ++  + +      +I     +P+   YN L  G C+ G
Sbjct: 375 LMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSG 434

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           +++AA  L ++ +      P+   Y + +  +C +GE  K +E+  +M +        I 
Sbjct: 435 KLNAAKELFQEMVSR-GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIY 493

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKT---ADLVLSGL 613
           + II GMC    +++A  +F +L ++ +  + + + Y+ ++    KK +   AD++   +
Sbjct: 494 NIIIHGMCNASKVDDAWSLFCSLSDKGV--KPDVVTYNVMIGGLCKKGSLSEADMLFRKM 551

Query: 614 K 614
           K
Sbjct: 552 K 552



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 124/259 (47%), Gaps = 25/259 (9%)

Query: 99  NQFQW--GPQVVTELSKLRRVTPDLVA-----EVLKVENNPTLASKFFHWAGKQKGYKHN 151
           N  +W  G +++ E+   R + PD+V      +V  V+    L +K  +     +G   +
Sbjct: 292 NDGKWDDGAKMLREMIG-RNIIPDVVTFSALIDVF-VKEGKLLEAKELYNEMITRGIAPD 349

Query: 152 FASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIR 211
             +YN+L     + N    A+Q+ +LM S+G                C+PD+  Y+ +I 
Sbjct: 350 TITYNSLIDGFCKENCLHEANQMFDLMVSKG----------------CEPDIVTYSILIN 393

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
                + +D  +R++ E+    +  + + Y TL++G C+ G++    ELF+EM   G+  
Sbjct: 394 SYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPP 453

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
               YG+L++GL   G++ KA ++ + +  S     +GIYN II G+C   + D A+ LF
Sbjct: 454 SVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLF 513

Query: 332 EVTVQDDLAPDFSTVNPLL 350
                  + PD  T N ++
Sbjct: 514 CSLSDKGVKPDVVTYNVMI 532



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 20/203 (9%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
            KG   N  +YN L     ++    AA ++ + M S+G                    + 
Sbjct: 413 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 472

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + LEI EKM+++     +  Y  +I  +     +D    ++  +    V+ DV+ Y  +I
Sbjct: 473 KALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMI 532

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLCK G +     LFR+MKE+G   D   Y +LI   +G   +  + +L++++   G+ 
Sbjct: 533 GGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFS 592

Query: 306 ADLGIYNSIIGGLCRVKQFDKAY 328
           AD      +I  L   ++ DK++
Sbjct: 593 ADSSTIKMVIDMLSD-RRLDKSF 614


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/447 (21%), Positives = 192/447 (42%), Gaps = 23/447 (5%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEMLEIL 191
           N  +YN L     R  L  AA ++ + M S+G                   ++ + +EI 
Sbjct: 257 NIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIY 316

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
            +MR + C P+ F + A+I +    +N    + ++E+M+   VE D++ + +L+    K 
Sbjct: 317 NQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKN 376

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           G      ++FR MK+ G   D+A + +LIE     G   +A  +   ++ +G   DL  +
Sbjct: 377 GMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATF 436

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N+++  L R  +++ A  + +   +    P+      +L   A  G ++   +++  +  
Sbjct: 437 NTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHT 496

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKK 430
           +       L K F  +  K   +  A D F  ++  GY S    +N ++    + G + K
Sbjct: 497 IYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDK 556

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH-NKIIEMSQVPSVAAYNCLT 489
           A   F  +R   LE + ++++  +  +   G +   CE    + +   Q P + +YN + 
Sbjct: 557 ATDTFALLRSTGLEPDVVTYNCLMGMYGREG-MYRKCEATLRECMAAGQTPDLVSYNTVI 615

Query: 490 KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
               K G++ +A  +  + + N    P  F Y   +      G   + + V+  M + GC
Sbjct: 616 FSYSKHGQLSSATRIFHEMVSN-GIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGC 674

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVF 576
            P+EV    ++   CK G  EE  ++ 
Sbjct: 675 KPDEVTYRTLVDAYCKIGKFEEVERIL 701



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 118/532 (22%), Positives = 228/532 (42%), Gaps = 27/532 (5%)

Query: 101 FQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAY 160
           F W  Q V    +   VT  ++  +L  E+  T  S+ F  + +++GY  +  +Y +L  
Sbjct: 69  FNWMRQSVN--FRPDGVTIAVMLRILGRESQLTTVSRLFK-SLREEGYPLDVYAYTSLIS 125

Query: 161 CLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE-RNL 219
            LSRN  F+                E L   E+M+    +P +  Y  +I +   + R+ 
Sbjct: 126 ALSRNRKFK----------------EALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSW 169

Query: 220 DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL 279
           +  L ++EEMK   ++ D   Y T I     G       ELF +MK +    DR  Y  L
Sbjct: 170 ENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNAL 229

Query: 280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339
           ++     G   +A ++LK++  +G   ++  YN ++    R    + A ++ +  V   +
Sbjct: 230 LDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGI 289

Query: 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALD 399
            PD  T   LL   +  G+++   ++  QM     +  +        + GK +     + 
Sbjct: 290 EPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMV 349

Query: 400 VFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV 458
           +FE+++  G    +  +N L+GA  + G   + L +F  M+    E +  +F+I I+ + 
Sbjct: 350 IFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYG 409

Query: 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE 518
             G   +A   ++ +++    P +A +N L   L + G  + A  L+ D L   +  P +
Sbjct: 410 RCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHA-ELILDELNRSSYKPND 468

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
             YA  +      GE EK+ E+++ +     P  +++    +    K   ++EA   F  
Sbjct: 469 IAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLA 528

Query: 579 LRERKLLTEANTIVYDEILIEHMKKKTADL---VLSGLKFFGLESKLKAKGC 627
           +R    L++ +T  ++ ++  + KK   D      + L+  GLE  +    C
Sbjct: 529 MRHHGYLSDTST--FNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNC 578



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/425 (22%), Positives = 180/425 (42%), Gaps = 16/425 (3%)

Query: 181 QGRIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +G+  + LE+   MR+++  +PD      M+R+L  E  L    R+++ ++++    DV 
Sbjct: 59  EGQWNKALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLREEGYPLDVY 118

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC----DL 295
           AY +LI  L +  +       F +MKE G       Y V+I+     GK G++     +L
Sbjct: 119 AYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLY---GKKGRSWENILEL 175

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
            +++   G + D   YN+ I         ++A +LF      +  PD  T N LL    +
Sbjct: 176 FEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGK 235

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SV 412
            G  +    +L +ME        ++  + E L   G+      A ++ + +  KG    V
Sbjct: 236 AGWYNEAANVLKEMESA--GCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDV 293

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             Y  L+ A    G+V++A+ ++ +MR  N   NS +F+  I  H ++ +  E       
Sbjct: 294 FTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFED 353

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           +      P +  +N L     K G     + + R  +      P +  + + I    R G
Sbjct: 354 MQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRG-MKKAGFEPDKATFNILIEAYGRCG 412

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
            +++ + + + M Q GC P+    + +++ + + G  E A  +   L       + N I 
Sbjct: 413 SSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSY--KPNDIA 470

Query: 593 YDEIL 597
           Y  +L
Sbjct: 471 YASML 475



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 18/203 (8%)

Query: 142 AGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           A +  GY  + +++NA+     +  +   A     L+ S G                 +P
Sbjct: 528 AMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTG----------------LEP 571

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           DV  Y  ++ +   E     C     E        D+++Y T+I    K G++     +F
Sbjct: 572 DVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIF 631

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            EM  NGI  D   Y   +   V  G   +A  ++K +  +G + D   Y +++   C++
Sbjct: 632 HEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAYCKI 691

Query: 322 KQFDKAYKLFEVTVQDDLAPDFS 344
            +F++  ++ +     D  P+FS
Sbjct: 692 GKFEEVERILKFIKSSD--PNFS 712



 Score = 42.0 bits (97), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 19/152 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFR----------AADQVPELMD---------SQGRI 184
           +  G + +  +YN L     R  ++R          AA Q P+L+            G++
Sbjct: 565 RSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQL 624

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           +    I  +M  N  +PD F Y   +            L V + M K   + D + Y TL
Sbjct: 625 SSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTL 684

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
           +   CK G+      + + +K +     +A Y
Sbjct: 685 VDAYCKIGKFEEVERILKFIKSSDPNFSKAAY 716


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 182/399 (45%), Gaps = 6/399 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           +I E + ++EK+  N C P +  Y A++  L     L+  + +  ++  +    DV+ Y 
Sbjct: 49  KIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 108

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +LI GL K  R    ++LF+EM   G+ +D   Y  LI GL+  GK+ +A  + K +   
Sbjct: 109 SLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQ 168

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D+   +++I GLC+  +   A ++F+      LAP+    + L+    +  +MD  
Sbjct: 169 GCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 228

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
            ++LAQM+K   +            + K   +  A   F+E+   G    V  YNIL+  
Sbjct: 229 LEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISG 288

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
             + G    A  +F  M       N +++   I    +   + +A   +  + E    P 
Sbjct: 289 FCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPD 348

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
              Y+ L  GLCK G+++   ML  +     VA+  T  +    I H+C++   ++ + +
Sbjct: 349 SFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRL---IFHLCKANRVDEAVSL 405

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            N + +EG  P+    ++IIS + K G + E + V+  +
Sbjct: 406 FNAIRKEG-MPHPYAYNSIISALIKSGKVNEGQAVYQEM 443



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 180/410 (43%), Gaps = 38/410 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + +   + ++   N C  D+  YT ++  LA  + +   + + E++  +     +  Y
Sbjct: 13  GMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATY 72

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLCK GR+    +L R++ +NG   D   Y  LI+GL  + +  +A  L K++  
Sbjct: 73  NALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMAS 132

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   Y ++I GL +  +  +A  +++        PD  T++ ++         D 
Sbjct: 133 RGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMI---------DG 183

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
             K                            RI  A+ +F+ ++ +G + +  +Y+ L+ 
Sbjct: 184 LCK--------------------------AGRIGAAVRIFKSMEARGLAPNEVVYSALIH 217

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L +  ++  AL +  +M+      ++++++I I    +SGD+  A    ++++E    P
Sbjct: 218 GLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKP 277

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  YN L  G CK G  DAA  +  D + +    P    Y   I  +C+  +  K    
Sbjct: 278 DVYTYNILISGFCKAGNTDAACGVFDD-MSSSRCSPNVVTYGTLISGLCKRRQLTKASLY 336

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
              M + GCPP+  + S+++ G+CK G LE    +F  + ER  +  + T
Sbjct: 337 YQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEM-ERSGVANSQT 385



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 156/345 (45%), Gaps = 6/345 (1%)

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  LI GL K G +++ H L +E   NG  ID   Y  +++ L    K+ +A  L++ + 
Sbjct: 2   FSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKIT 61

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +G    +  YN+++ GLC++ + ++A  L    V +   PD  T   L+    +  R  
Sbjct: 62  ANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSF 121

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
             +KL  +M      +A D   +   + G  +  +I  A  V++ +  +G    V   + 
Sbjct: 122 EAYKLFKEMASR--GLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLST 179

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++  L + G +  A+ +F  M    L  N + +S  I    ++  +  A E   ++ +  
Sbjct: 180 MIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF 239

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P    YN L  GLCK G++ AA     + L      P  + Y + I   C++G  +  
Sbjct: 240 CTPDTITYNILIDGLCKSGDVAAARAFFDEML-EAGCKPDVYTYNILISGFCKAGNTDAA 298

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             V ++M+   C PN V    +ISG+CK   L +A   + +++ER
Sbjct: 299 CGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKER 343



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 1/257 (0%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI   + I + M      P+   Y+A+I  L   R +D  L +  +MKK     D + Y
Sbjct: 188 GRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITY 247

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GLCK G V      F EM E G   D   Y +LI G    G    AC +  D+  
Sbjct: 248 NILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSS 307

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           S    ++  Y ++I GLC+ +Q  KA   ++   +    PD    + L+    + G+++ 
Sbjct: 308 SRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEG 367

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
              L  +ME+   + +    +   F + K  R+  A+ +F  ++ +G      YN ++ A
Sbjct: 368 GCMLFDEMERSGVANSQTRTRLI-FHLCKANRVDEAVSLFNAIRKEGMPHPYAYNSIISA 426

Query: 422 LLEIGEVKKALYLFGKM 438
           L++ G+V +   ++ +M
Sbjct: 427 LIKSGKVNEGQAVYQEM 443



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 150/332 (45%), Gaps = 8/332 (2%)

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           + +LI GLV  G + +A  L ++   +G   D+  Y +I+  L + K+  +A  L E   
Sbjct: 2   FSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKIT 61

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEER 393
            +   P  +T N LL    +MGR++    LL ++  +      D+  +   +  +GK++R
Sbjct: 62  ANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI--VDNGCTPDVVTYTSLIDGLGKKKR 119

Query: 394 IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
              A  +F+E+  +G +     Y  L+  LL+ G++ +A  ++  M       + ++ S 
Sbjct: 120 SFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLST 179

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
            I    ++G I  A      +      P+   Y+ L  GLCK  ++D A+ ++   +   
Sbjct: 180 MIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQ-MKKA 238

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              P    Y + I  +C+SG+        +EM + GC P+    + +ISG CK G  + A
Sbjct: 239 FCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAA 298

Query: 573 RKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
             VF ++   +     N + Y  ++    K++
Sbjct: 299 CGVFDDMSSSR--CSPNVVTYGTLISGLCKRR 328


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/445 (23%), Positives = 197/445 (44%), Gaps = 17/445 (3%)

Query: 138 FFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRN 197
           FF WA  + G++HN  + N+L                 E+  + G   E   + +     
Sbjct: 3   FFQWAKARPGFQHNTYTCNSLL----------------EVFVNDGCHREAYRVFKDELVT 46

Query: 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
           L +PD F Y  +IR       +   + +  EMK   +   ++ + +LI  LC+     + 
Sbjct: 47  LFRPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKA 106

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
            ++F +M +  +  D  +Y V+I  L    K+  A    + +V SG   D   Y  ++  
Sbjct: 107 LQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHS 166

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
           L +  ++++ +++FE  +    +P+  T   ++    + GR+D    L+ +++    S +
Sbjct: 167 LFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPS 226

Query: 378 ADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGK 437
             L       + K +R   A ++FE   G     V +Y   +  L + G++ +A  +  K
Sbjct: 227 GSLYSTLIDGLCKHDRHDEARELFEMAAGD-VQDVIVYTSFISGLCKAGKLDEAKAVHVK 285

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M       + +S+++ I    +   + EA E  ++ +E   +P V     L  GLCK   
Sbjct: 286 MIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRR 345

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           ++ A +++   L      P+   Y+  I  +C++   +    VL +M + GC P+ V  +
Sbjct: 346 VEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYT 405

Query: 558 AIISGMCKHGTLEEARKVFTNLRER 582
           AII   CK G L+EAR++F  + ER
Sbjct: 406 AIIDAFCKVGRLDEARELFQRMHER 430



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 135/308 (43%), Gaps = 4/308 (1%)

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           L+E  V +G   +A  + KD + + +R D   Y ++I G C+ +Q  +A  L        
Sbjct: 23  LLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAG 82

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL 398
           + P   T   L+    E+   D   ++  QM  +K    A L       + K  ++ +A 
Sbjct: 83  ITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAA 142

Query: 399 DVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
             FE +   G     + Y +L+ +L +  + ++   +F +M         ++++  +  +
Sbjct: 143 SYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGY 202

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
            ++G I +A     ++    + PS + Y+ L  GLCK    D A  L     G+V     
Sbjct: 203 CKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELFEMAAGDVQD--- 259

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
              Y   I  +C++G+ ++   V  +M + GC P+ V  + II  +CK   + EA+++  
Sbjct: 260 VIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMD 319

Query: 578 NLRERKLL 585
              ERK +
Sbjct: 320 QAMERKCM 327



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 99/217 (45%), Gaps = 20/217 (9%)

Query: 136 SKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA----DQVPE------------LMD 179
           +K  H    + G   +  SYN + Y L ++N    A    DQ  E            L+D
Sbjct: 279 AKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVD 338

Query: 180 S---QGRIAEMLEILEKMRRNLCK-PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
                 R+ E   ILE+M     + P V  Y+A+I  L     LD    V ++M++    
Sbjct: 339 GLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCV 398

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            DV+ Y  +I   CK GR+    ELF+ M E G  +D   Y +LI G     KV +A  +
Sbjct: 399 PDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAM 458

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
           ++++   G + ++   ++I+ GLC+  + ++A  L E
Sbjct: 459 IEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLME 495


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 107/455 (23%), Positives = 203/455 (44%), Gaps = 43/455 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G IA+    + KM+ +   P+V  Y  +I      +  +A L V+ +M  + VEA+   
Sbjct: 447 RGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFI 506

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             +L+ GL K G +     LF++M E G+L+D   Y  L++GL   G +  A  + ++L+
Sbjct: 507 VDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELM 566

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +     D  +YN  I  LCR+ +F +A    +      L PD +T N ++      G   
Sbjct: 567 ERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTS 626

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE---------------------------R 393
              KLL +M+    S+  +L  +   +VG  E                           R
Sbjct: 627 KALKLLNEMK--WSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRR 684

Query: 394 IMMA----------LDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
           ++ A          L+V E + G G ++ + +YN L+  L   G  +KA  +  +M G  
Sbjct: 685 VLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRG 744

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           +  ++++F+  I  H +S  +  A   + +++     P++A +N L  GL   G I  A 
Sbjct: 745 IAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEAD 804

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            ++ + +  +   P    Y + +    +     + + +  EM  +G  P     +++IS 
Sbjct: 805 TVICE-MKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISD 863

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             K G + +A+++F+ ++ R +L  ++T  YD +L
Sbjct: 864 FAKAGMMNQAKELFSEMKRRGVLHTSST--YDILL 896



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/429 (22%), Positives = 193/429 (44%), Gaps = 41/429 (9%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           E+ E+M+ +  +P V  +T +I      + ++    ++E M +  V  DV+    L+ GL
Sbjct: 245 EVAERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGL 304

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C+ GR    + LFREM + G+  +   Y   I+ L    +V ++  LL ++V  G   DL
Sbjct: 305 CRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDL 364

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
            +Y +++  L +  + ++A  +    + D++ P+  T   L+      G +D   ++L Q
Sbjct: 365 VMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQ 424

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMM-------------------------------- 396
           ME+   SV+ ++  F   L G  +R  +                                
Sbjct: 425 MEEK--SVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKC 482

Query: 397 -----ALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
                ALDV+ ++  +G  +   I + L+  L + G +++A  LF  M    L ++ +++
Sbjct: 483 QGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNY 542

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +  +    ++G++  A +   +++E +  P    YN     LC++G+   A   +++ + 
Sbjct: 543 ATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKE-MR 601

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
           N    P +  Y   I   CR G   K +++LNEM      PN +  + ++ G+ + G +E
Sbjct: 602 NTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVE 661

Query: 571 EARKVFTNL 579
           +A+ +   +
Sbjct: 662 KAKYLLNEM 670



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 104/472 (22%), Positives = 189/472 (40%), Gaps = 49/472 (10%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           V + +  +G+I E  ++L     +   P+   YT ++       N+D   ++  +M++  
Sbjct: 370 VMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKS 429

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           V  +V+ + +++ GL K G + +     R+MK++GI  +   YG LI+G         A 
Sbjct: 430 VSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAAL 489

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE--------------VTVQD-- 337
           D+ +D++  G  A+  I +S++ GL +    ++A  LF+               T+ D  
Sbjct: 490 DVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGL 549

Query: 338 -------------------DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
                              +L+PD    N  + C   +G+       L +M         
Sbjct: 550 FKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLE--P 607

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP----IYNILMGALLEIGEVKKAL 432
           D   +   +    +E     AL +  E+K   +SS+      Y  L+  LLE G V+KA 
Sbjct: 608 DQATYNTMISAQCREGNTSKALKLLNEMK---WSSIKPNLITYTTLVVGLLEAGVVEKAK 664

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
           YL  +M         L++   +Q    S       E H  ++       +  YN L   L
Sbjct: 665 YLLNEMASAGFTPTPLTYRRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVL 724

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           C  G    A +++ + LG     P    +   IL  C+S   +       +M  +G  PN
Sbjct: 725 CCHGMTRKATIVLDEMLGR-GIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPN 783

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
               + ++ G+   G + EA  V   +++  L  E N + YD ++  + KK 
Sbjct: 784 IATFNTLLGGLESAGRIGEADTVICEMKKMGL--EPNNLTYDILVTGYAKKS 833



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 177/408 (43%), Gaps = 40/408 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G  A + E+L +  R +    V  + A+I      +++ A L V E M    +  DV+ Y
Sbjct: 169 GEAAALAEMLVR-GRGIDGLGVVGWNALIDGYCKVQDMAAALAVVERMTTQGLSLDVVGY 227

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+ G    G      E+   MK +G+      +  LI       ++ +A  L + +V 
Sbjct: 228 NTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVR 287

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           SG   D+   ++++ GLCR  +F +AY LF    +  +AP+  T    +   A++ R++ 
Sbjct: 288 SGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNE 347

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
              LL +M  +   VA DL  +   +  +GKE +I  A DV                   
Sbjct: 348 SLGLLGEM--VSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRH---------------- 389

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            AL +                 N+  N +++++ +  H  +G+I  A +   ++ E S  
Sbjct: 390 -ALSD-----------------NITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVS 431

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+V  ++ +  GL K G I  A   +R  + +    P    Y   I    +    E  ++
Sbjct: 432 PNVVTFSSILNGLVKRGCIAKAAGYMRK-MKDSGIAPNVVTYGTLIDGFFKCQGQEAALD 490

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           V  +M  EG   N  I  ++++G+ K+G +EEA  +F ++ ER LL +
Sbjct: 491 VYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLD 538


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 180/397 (45%), Gaps = 35/397 (8%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P ++ Y  ++R    E  +D    + ++M    V  +   +  LI  LC  G +    EL
Sbjct: 19  PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDAREL 78

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F +M E G   +   +G+L+ G    G   K  +LL ++   G+  +  +YN++I   C+
Sbjct: 79  FDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCK 138

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             + D A KL +   +D L+PD  T N  +      G++    ++   M+          
Sbjct: 139 EGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQ---------- 188

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
                                +E+ G    ++  YN+++G   + G +++A  LF KM+ 
Sbjct: 189 --------------------IDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKV 228

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
               +N  S++I +   V  G +LEA     ++++M   P+V +YN +  GLCK G +  
Sbjct: 229 SENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFD 288

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILH-VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           A ML+R  + +    P    Y  T+LH  C +G+  +   VL EM ++GC PN   C+ +
Sbjct: 289 ARMLMR-LMTSSGVLPDTVTYT-TLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNIL 346

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANT--IVYD 594
           +  + K G + EA ++   + E+  + +  T  IV D
Sbjct: 347 LYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVID 383



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/403 (21%), Positives = 179/403 (44%), Gaps = 39/403 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+  +  + + M  +   P+ + +  +I +L     LD    ++++M +   E +  +
Sbjct: 34  EGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYS 93

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  L+ G C+ G   +G EL  EM+  G   ++ +Y  LI     EGK   A  L+ ++ 
Sbjct: 94  FGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMR 153

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL----APDFSTVNPLLVCCAEM 356
             G   D+  +N+ I  LC   +  +A ++F     D++     P+  T N +L    + 
Sbjct: 154 KDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKE 213

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN 416
           G ++   +  A  EK+K S         E L+ +E                       YN
Sbjct: 214 GMLE---EARALFEKMKVS---------ENLMNRES----------------------YN 239

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           I +  L+ IG++ +A  +  +M  + +E N  S++I +    ++G + +A      +   
Sbjct: 240 IWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSS 299

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
             +P    Y  L  G C  G++  A  ++R+ + +  S P  +   + +  + + G   +
Sbjct: 300 GVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCS-PNNYTCNILLYSLWKEGRISE 358

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             E+L +M ++G   + V C+ +I G+C +G L++A ++   +
Sbjct: 359 AEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGM 401



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 108/468 (23%), Positives = 182/468 (38%), Gaps = 76/468 (16%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G + N  SYN +   L +N +   A  +  LM S G +                PD   Y
Sbjct: 265 GMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVL----------------PDTVTY 308

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           T ++        +     V  EM +D    +      L+  L K GR+    EL ++M E
Sbjct: 309 TTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNE 368

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA-------------------- 306
            G +ID     ++I+GL   GK+ KA +++  +   G  A                    
Sbjct: 369 KGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKK 428

Query: 307 ---DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
              DL  Y++II GLC+  +  +A K F   +  +L PD +  +  +    + G++ + F
Sbjct: 429 CMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAF 488

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGAL 422
           ++L  MEK   +            +G + +I     + +E++ +G S  V IYN ++ +L
Sbjct: 489 RVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSL 548

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC----------------------HVES 460
            E G VK A  +  +M    +  N  SFSI I+                       H E+
Sbjct: 549 CEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIALNVCGHKEA 608

Query: 461 ------------GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
                       G++++A E     ++ S       Y  L   LCK  ++D A  ++   
Sbjct: 609 LYSLTFNELLVGGEVVKAKELFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASGILHKL 668

Query: 509 LG-NVASGPTEFKYALTIL-HVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
           +       P  F   +  L       EA+++ E + EM  EG   N+V
Sbjct: 669 IDKGYWFDPASFMPVIDGLGKRGNKHEADELAEKMMEMASEGKVKNKV 716



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 93/427 (21%), Positives = 180/427 (42%), Gaps = 29/427 (6%)

Query: 183 RIAEMLE---ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           RI ++LE   +L++M     +P+V++Y  ++  L     L     +   M    V  D +
Sbjct: 247 RIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTV 306

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TL+ G C  G+V   + + REM  +G   +     +L+  L  EG++ +A +LL+ +
Sbjct: 307 TYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKM 366

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE-----------------VTVQDD---- 338
            + GY  D    N +I GLC   + DKA ++                   + + DD    
Sbjct: 367 NEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSR 426

Query: 339 --LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
               PD  + + ++    + GR+    K   +M        + +   F     KE +I  
Sbjct: 427 KKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISS 486

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A  V ++++ KG + ++  YN L+  L    ++ +   L  +MR   +  +   ++  + 
Sbjct: 487 AFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLS 546

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
              E G + +A    +++++    P++++++ L K  CK  +  A   +    L NV  G
Sbjct: 547 SLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIAL-NVC-G 604

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
             E  Y+LT   +   GE  K  E+              +   +I  +CK   L++A  +
Sbjct: 605 HKEALYSLTFNELLVGGEVVKAKELFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASGI 664

Query: 576 FTNLRER 582
              L ++
Sbjct: 665 LHKLIDK 671



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 106/509 (20%), Positives = 201/509 (39%), Gaps = 105/509 (20%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFA------------------------------- 205
           L+   G + +  E+ +KM    C+P+ ++                               
Sbjct: 65  LLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSP 124

Query: 206 ----YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
               Y  +I     E   D   ++ +EM+KD +  DV+ +   I  LC  G+V+    +F
Sbjct: 125 NKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIF 184

Query: 262 REMKENGI---------------------------------------LIDRAIYGVLIEG 282
           R+M+ + +                                       L++R  Y + + G
Sbjct: 185 RDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLG 244

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           LV  GK+ +A  +LK++VD G   ++  YN ++ GLC+      A  L  +     + PD
Sbjct: 245 LVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPD 304

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
             T   LL      G++     +L +M +   S          + + KE RI  A ++ +
Sbjct: 305 TVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQ 364

Query: 403 ELKGKGYSSVPIY-NILMGALLEIGEVKKALYLFGKMR---------------GLNLEVN 446
           ++  KGY    +  NI++  L   G++ KA+ +   M                GL  + +
Sbjct: 365 KMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSD 424

Query: 447 S--------LSFSIAIQCHVESGDILEACECHNKIIEM---SQVPSVAAYNCLTKGLCKI 495
           S        +S+S  I    ++G + EA     K IEM   +  P  A Y+      CK 
Sbjct: 425 SRKKCMPDLISYSTIISGLCKAGRVGEA---KKKFIEMMGKNLQPDSAIYDVFIHSFCKE 481

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G+I +A  +++D +       T   Y   I+ +    +  +I  +++EM + G  P+  I
Sbjct: 482 GKISSAFRVLKD-MEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSI 540

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKL 584
            + ++S +C+ G +++A  V   + ++ +
Sbjct: 541 YNNVLSSLCEGGRVKDAPSVLDEMLQKGI 569


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 128/581 (22%), Positives = 236/581 (40%), Gaps = 83/581 (14%)

Query: 21  PSQNRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHY--LPNQKTQSPPSDPKT 78
           P     ++    FSN+  LRN  S++E  Q    N+   D H   L N+  ++   +   
Sbjct: 23  PQSRSDSIPACRFSNKTHLRNVTSSAEFRQPHFPNLDNRDAHLMKLLNRSCRAGKHNESL 82

Query: 79  FQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKF 138
           + L+  +S    F  D     +   G      L K  RV      E+L+   +P      
Sbjct: 83  YFLESVVS--KGFKPDVVLCTKLIKGFFNSRNLKKAMRVM-----EILETYGDP------ 129

Query: 139 FHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG---------------- 182
                       +  SYNA+    S+ N   +A+QV + M S+G                
Sbjct: 130 ------------DVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLC 177

Query: 183 ---RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
              ++    E+++++ ++ CKP V  YT +I     E  ++  L +++E+    +  D+ 
Sbjct: 178 SRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLY 237

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I G+CK G   R  +  R +   G   D   Y +L+   + + +      L+KD+
Sbjct: 238 TYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDM 297

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V SG   ++  ++ +I   CR  +  +A  + EV  +  L PD  + +PL+    + GR+
Sbjct: 298 VLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRL 357

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNIL 418
           D                                   +A++  E++   G    +  YN +
Sbjct: 358 D-----------------------------------LAIEYLEKMVSDGCLPDIVNYNTI 382

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L + G    AL +F K+  +       +++         G+ ++A E  +++I    
Sbjct: 383 LATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGI 442

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P    YN L   LC+ G +D A+ L+ D +      PT   + + +L +C++    + I
Sbjct: 443 DPDEITYNSLISCLCRDGLVDEAIGLLVD-MEATRFQPTVISFNIVLLGMCKAHRVFEGI 501

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           E+L  M ++GC PNE     +I G+   G   EA ++  +L
Sbjct: 502 ELLITMVEKGCLPNETSYVLLIEGIAYAGWRAEAMELANSL 542



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 133/579 (22%), Positives = 240/579 (41%), Gaps = 78/579 (13%)

Query: 59  WDPHYLPNQ-KTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRV 117
           +   +LP      +P + P   Q +    P  RF      +N        VT  ++ R+ 
Sbjct: 2   FSSEFLPQSLHFTNPLAKPTIPQSRSDSIPACRFSNKTHLRN--------VTSSAEFRQP 53

Query: 118 T-PDLV---AEVLKVENNPTLASK-----FFHWAGKQKGYKHNFASYNALAYCLSRNNLF 168
             P+L    A ++K+ N    A K     +F  +   KG+K +      L      +   
Sbjct: 54  HFPNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNL 113

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
           + A +V E++++ G                  PDV++Y AMI   +    +D+  +V++ 
Sbjct: 114 KKAMRVMEILETYG-----------------DPDVYSYNAMISGFSKANQIDSANQVFDR 156

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           M+      DV+ Y  +I  LC  G++    E+  E+ ++G       Y +LIE  + EG+
Sbjct: 157 MRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGR 216

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           + +A +L  +LV  G R DL  YN+II G+C+    D+A             PD  + N 
Sbjct: 217 INEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNI 276

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
           LL       R ++  +L+  M                 L G E  ++             
Sbjct: 277 LLRSFLNKSRWEDGERLMKDM----------------VLSGCEPNVV------------- 307

Query: 409 YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
                 ++IL+ +    G V++A+ +   M+   L  +S S+   I    + G +  A E
Sbjct: 308 -----THSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIE 362

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
              K++    +P +  YN +   LCK G  D A+  V + L  V   PT   Y      +
Sbjct: 363 YLEKMVSDGCLPDIVNYNTILATLCKFGCADLALD-VFEKLDEVGCPPTVRAYNTMFSAL 421

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
              G   K +E+++EM ++G  P+E+  +++IS +C+ G ++EA  +  ++   +   + 
Sbjct: 422 WSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRF--QP 479

Query: 589 NTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
             I ++ +L+   K   A  V  G++       +  KGC
Sbjct: 480 TVISFNIVLLGMCK---AHRVFEGIELL---ITMVEKGC 512


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 112/505 (22%), Positives = 222/505 (43%), Gaps = 59/505 (11%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K +G   +   YN+L   L R                 G +    ++++ M+R+  +P+V
Sbjct: 201 KAQGVGVDVVGYNSLVAGLCR----------------AGEVDAARDMVDTMKRDGVEPNV 244

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT  I        +D    ++EEM +  V  DV+    L+ GLCK GR    + LFRE
Sbjct: 245 VTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFRE 304

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M++ G   +   Y +LI+ L    +  ++  LL ++V  G   DL +Y +++  LC+  +
Sbjct: 305 MEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGK 364

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            D+A  +F   + D+  P+  T   L+    + G +D   ++L++ME+   S++ ++  F
Sbjct: 365 IDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEK--SISPNVVTF 422

Query: 384 FEFLVGKEER--IMMALDVFEELKGKG-------YSSVP--------------------- 413
              + G  +R  +  A D   E+K +G       Y +V                      
Sbjct: 423 SSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLC 482

Query: 414 --------IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
                   I + L+  L + G+++KA  LF +M    + ++ ++++  I    ++G++  
Sbjct: 483 EGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPA 542

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A +   ++ E + +P    YN     LC +G+   A   + + + +    P +  Y   I
Sbjct: 543 AFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEE-MQSTGLKPDQVTYNTMI 601

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
               R G+  K +++LN M +    PN +  S +I G+ + G +E+A+ +   +      
Sbjct: 602 AAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGF- 660

Query: 586 TEANTIVYDEILIEHMKKKTADLVL 610
               ++ +  +L    + + +DL+L
Sbjct: 661 -SPTSLTHRRVLQACSQGRRSDLIL 684



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 109/468 (23%), Positives = 204/468 (43%), Gaps = 20/468 (4%)

Query: 141 WAGKQKGY----KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRR 196
           W GK   Y    K      N + Y    +  F+   Q   L      + E +E+      
Sbjct: 434 WVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEV------ 487

Query: 197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
                + F   +++  L     ++    ++ EM +  V  D + Y TLI GL K G +  
Sbjct: 488 -----NKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPA 542

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
             ++ +E+ E  +L D  +Y V I  L   GK  +A   L+++  +G + D   YN++I 
Sbjct: 543 AFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIA 602

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
              R  +  KA KL     +  + P+  T + L+V   E G ++    LL +M    FS 
Sbjct: 603 AQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSP 662

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLF 435
            +   +       +  R  + L++ E +   G  + + +YN L+  L   G  +KA+ + 
Sbjct: 663 TSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVL 722

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M G  +  ++++F+  I  H +SG +  A   +++++     P+VA +N L  GL   
Sbjct: 723 EEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESA 782

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G I  + M++ + +      P+   Y + +    +     + + +  EM  +G  P    
Sbjct: 783 GRIGESDMVLNE-MKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVST 841

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
            +A+IS   K G + +A+++F  ++ R +L  + T  YD IL+    K
Sbjct: 842 YNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCT--YD-ILVSGWSK 886



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/469 (22%), Positives = 187/469 (39%), Gaps = 48/469 (10%)

Query: 177 LMD---SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD    +G+I E  ++      +   P+   YT +I  L    N+D   +V  EM++  
Sbjct: 355 LMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKS 414

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE------------ 281
           +  +V+ + ++I GL K G V +  +  REMKE GI  +   YG +I+            
Sbjct: 415 ISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAAL 474

Query: 282 -----------------------GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
                                  GL   GK+ KA  L +++ + G   D   Y ++I GL
Sbjct: 475 DVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGL 534

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
            +      A+K+ +   + +L PD    N  + C   +G+       L +M+        
Sbjct: 535 FKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPD- 593

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP----IYNILMGALLEIGEVKKALYL 434
             +  +  ++  + R        + L G   SS+      Y+ L+  L E G V+KA YL
Sbjct: 594 --QVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYL 651

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
             +M        SL+    +Q   +        E H  ++       +  YN L + LC 
Sbjct: 652 LNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCY 711

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
            G    AM+++ +  G     P    +   IL   +SG  +      ++M   G  PN  
Sbjct: 712 NGMTRKAMVVLEEMSGR-GIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVA 770

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
             + ++ G+   G + E+  V   +++R +  E + + YD ++  + K+
Sbjct: 771 TFNTLLGGLESAGRIGESDMVLNEMKKRGI--EPSNLTYDILVTGYGKQ 817



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 112/455 (24%), Positives = 200/455 (43%), Gaps = 26/455 (5%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G   +  + N +   L R+     A  + E+M   G I  +              DV 
Sbjct: 130 KRGVPFDAVTVNTVLVGLCRDGRVDRAAALAEVMVRGGGIGGL--------------DVV 175

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            + +++       +++    V E MK   V  DV+ Y +L+ GLC+ G V    ++   M
Sbjct: 176 GWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTM 235

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K +G+  +   Y + I        V  A  L +++V  G   D+   ++++GGLC+  +F
Sbjct: 236 KRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRF 295

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +AY LF    +   AP+  T   L+   A+  R +    LL   E +   V  DL  + 
Sbjct: 296 SEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLG--EVVSRGVVMDLIMYT 353

Query: 385 EFL--VGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGL 441
             +  + KE +I  A D+F       ++   + Y +L+ AL + G V  A  +  +M   
Sbjct: 354 ALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEK 413

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
           ++  N ++FS  I   V+ G + +A +   ++ E    P+V  Y  +  G  K    +AA
Sbjct: 414 SISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAA 473

Query: 502 MMLVRDCLGNVASGPTEFKYALTIL--HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           + +  + L     G    K+ +  L   + ++G+ EK   +  EM + G   + V  + +
Sbjct: 474 LDVYHEML---CEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTL 530

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           I G+ K G L  A KV   L E+ LL +A  +VY+
Sbjct: 531 IDGLFKTGNLPAAFKVGQELTEKNLLPDA--VVYN 563



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 110/474 (23%), Positives = 189/474 (39%), Gaps = 74/474 (15%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + +  + + +M+     P+V  Y  +I         +A L V+ EM  + VE +   
Sbjct: 432 RGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFI 491

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             +L+ GL K G++ +   LFREM E G+L+D   Y  LI+GL   G +  A  + ++L 
Sbjct: 492 VDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELT 551

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +     D  +YN  I  LC + +  +A    E      L PD  T N ++   +  G+  
Sbjct: 552 EKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTA 611

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG---------------------------KEER 393
              KLL  M++   S+  +L  +   +VG                              R
Sbjct: 612 KALKLLNGMKR--SSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRR 669

Query: 394 IMMA----------LDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
           ++ A          L++ E +   G  + + +YN L+  L   G  +KA+ +  +M G  
Sbjct: 670 VLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRG 729

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL---CKIGEID 499
           +  ++++F+  I  H +SG +  A   +++++     P+VA +N L  GL    +IGE D
Sbjct: 730 IAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESD 789

Query: 500 AAMM-----------LVRDCLGN------------------VASG--PTEFKYALTILHV 528
             +            L  D L                    V  G  P    Y   I   
Sbjct: 790 MVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDF 849

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
            + G   +  E+ NEM   G  P       ++SG  K     E RK   +++E+
Sbjct: 850 SKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEK 903



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 160/373 (42%), Gaps = 41/373 (10%)

Query: 228 EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL--IDRAIYGVLIEGLVG 285
           EM K  V  D +   T+++GLC+ GRV R   L   M   G +  +D   +  L++G   
Sbjct: 127 EMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALAEVMVRGGGIGGLDVVGWNSLVDGYCK 186

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
            G +  A  + + +   G   D+  YNS++ GLCR  + D A  + +   +D + P+  T
Sbjct: 187 VGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVT 246

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELK 405
               +V       +D+ F L                                   +EE+ 
Sbjct: 247 YTMFIVEYCRRNAVDDAFSL-----------------------------------YEEMV 271

Query: 406 GKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
            KG    V   + L+G L + G   +A  LF +M  +    N +++ + I    ++    
Sbjct: 272 RKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGN 331

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
           E+     +++    V  +  Y  L   LCK G+ID A  + R  L +  + P    Y + 
Sbjct: 332 ESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHT-PNGVTYTVL 390

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           I  +C++G  +   +VL+EM ++   PN V  S+II+G+ K G + +A      ++ER +
Sbjct: 391 IDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGI 450

Query: 585 LTEANTIVYDEIL 597
             + N + Y  ++
Sbjct: 451 --DPNVVTYGTVI 461



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 16/229 (6%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G   +   YN L   L  N + R A                + +LE+M      PD   +
Sbjct: 694 GLCADITVYNTLVRVLCYNGMTRKA----------------MVVLEEMSGRGIAPDTITF 737

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
            A+I       +LD     +++M    +  +V  + TL+ GL   GR+     +  EMK+
Sbjct: 738 NALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKK 797

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            GI      Y +L+ G   +    +A  L  ++V  G+   +  YN++I    +V    +
Sbjct: 798 RGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQ 857

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
           A +LF       + P   T + L+   +++       K L  M++  FS
Sbjct: 858 AKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFS 906


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/434 (22%), Positives = 185/434 (42%), Gaps = 48/434 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G     L++L+KM    CKPDV AY  +I  L  +R  +  +  + EM    +  +V+ Y
Sbjct: 190 GHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTY 249

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +++ G C  G++     LF++M    ++ +   + +L++GL  EG + +A  + + + +
Sbjct: 250 SSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTE 309

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G   D   Y++++ G C   Q D+A KLF++ V    AP     N L+    +  R++ 
Sbjct: 310 NGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNE 369

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
              LL++M     +                                       Y+ LM  
Sbjct: 370 AKTLLSEMYDRDLT----------------------------------PDTVTYSTLMQG 395

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
             + G  + A  LF +M    L  +S+++SI +    + G + EA      + E    P 
Sbjct: 396 FCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPH 455

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV---ASGPTEFKYALTILHVCRSGEAEKII 538
           +  YN L +G+C  G+++AA    R+   N+      P+   Y + I  + + G + +  
Sbjct: 456 ICIYNILIQGMCNFGKLEAA----RELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEAC 511

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY----- 593
           E+  +M   GC PN    +  I G  ++G    A ++   +  R    +++T        
Sbjct: 512 EMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLDLE 571

Query: 594 --DEILIEHMKKKT 605
             DEI+   M++ +
Sbjct: 572 SNDEIISRFMRRSS 585



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 185/389 (47%), Gaps = 6/389 (1%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
           L KM +   +P    +  ++  L ++  +   +++++E+ K      ++ Y T+I GLCK
Sbjct: 129 LGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCK 188

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
            G      +L ++M+E G   D   Y  +I+ L  + +  +A     ++VD G   ++  
Sbjct: 189 IGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVT 248

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           Y+SI+ G C + Q ++A  LF+  +  ++ P+  T   L+    + G +    ++   M 
Sbjct: 249 YSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMT 308

Query: 371 KLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGE 427
             +  V  D   +   + G   + ++  A  +F+ + GKG++ SV +YNIL+    +   
Sbjct: 309 --ENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRR 366

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           + +A  L  +M   +L  +++++S  +Q   ++G    A +   ++     +P    Y+ 
Sbjct: 367 LNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSI 426

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L  GLCK G +D A  L++  +      P    Y + I  +C  G+ E   E+ + +  +
Sbjct: 427 LLDGLCKHGHLDEAFRLLK-AMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVK 485

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVF 576
           G  P+ V  + +ISG+ K G   EA ++F
Sbjct: 486 GIQPSVVTYTVMISGLLKEGLSNEACEMF 514



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 117/283 (41%), Gaps = 36/283 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I E   + E M  N  +PD + Y+A++     +  +D   ++++ M        V  
Sbjct: 294 EGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRV 353

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK  R+     L  EM +  +  D   Y  L++G    G+   A  L K++ 
Sbjct: 354 YNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMC 413

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D   Y+ ++ GLC+    D+A++L +   +  + P     N L+        M 
Sbjct: 414 SYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILI------QGMC 467

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
           NF KL A                             A ++F  L  KG   SV  Y +++
Sbjct: 468 NFGKLEA-----------------------------ARELFSNLFVKGIQPSVVTYTVMI 498

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
             LL+ G   +A  +F KM       NS ++++AIQ  + +GD
Sbjct: 499 SGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGD 541



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 3/177 (1%)

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            V  A    GKM  L L+   ++F   +        I++A +  ++I +M   PS+  Y 
Sbjct: 121 HVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYT 180

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            + KGLCKIG    A+ L++  +      P    Y   I  +C+   A + +   +EM  
Sbjct: 181 TIIKGLCKIGHTTNALQLLKK-MEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVD 239

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL--TEANTIVYDEILIEHM 601
           +G PPN V  S+I+ G C  G L EA  +F  +  R ++  T   TI+ D +  E M
Sbjct: 240 QGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGM 296



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 6/204 (2%)

Query: 397 ALDVFEELKG-KGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A+  F +L G +    V ++N L+G+L++       + L  +M   N+  N  + +I I 
Sbjct: 53  AVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILIN 112

Query: 456 C--HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
           C  H     +  A     K+ ++   P+   +  L  GLC   +I  A+ L  D +G + 
Sbjct: 113 CLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLF-DEIGKMG 171

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
             P+   Y   I  +C+ G     +++L +M ++GC P+ V  + +I  +CK     EA 
Sbjct: 172 FAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAM 231

Query: 574 KVFTNLRERKLLTEANTIVYDEIL 597
             F+ + ++ +    N + Y  IL
Sbjct: 232 YFFSEMVDQGI--PPNVVTYSSIL 253


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 126/508 (24%), Positives = 227/508 (44%), Gaps = 42/508 (8%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEM 187
           G   N  +YNAL   L +N  F  AD++ + M  +G                    I + 
Sbjct: 356 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDA 415

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L + +KMR    K  V+ Y ++I     + +LD    +   M K+ +     +Y  LI G
Sbjct: 416 LCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAG 475

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC+ G +    EL REM E GI  +   +  LI G   + K+ +A  L   ++DS    +
Sbjct: 476 LCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPN 535

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
              +N +I G C V    KA++L++  V+  L PD  T   L+        +    + +A
Sbjct: 536 EVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVA 595

Query: 368 QMEKL-----KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
            +E        FS+ A L  FF     +E R      +++E+  +G    +  + I++ A
Sbjct: 596 DLENSYAVLNNFSLTALLYGFF-----REGRFTETYHLWDEMAVRGVKLDLVSFTIIVYA 650

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
            L+  + +K+  LF +M+   ++ + + ++  I    +  ++++A  C ++++     P+
Sbjct: 651 ALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPN 710

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
              +  L   LCK G + +A +L ++ L GNV   P +F Y   + +    G+ EK  ++
Sbjct: 711 TVTHTVLINNLCKSGYLGSAELLCKEMLAGNVL--PNKFTYNCFLDYFATEGDMEKAKDL 768

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
            + M Q G   + V  + +I G+CK G ++EA  + + + E       + I Y  I+ E 
Sbjct: 769 HSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGF--SPDCISYSTIIHEL 825

Query: 601 MKKKTADLVLSGLKFFGLESKLKAKGCK 628
            K    +      K F L +++  KG K
Sbjct: 826 CKMGDIN------KAFELWNEMLYKGLK 847



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 112/479 (23%), Positives = 203/479 (42%), Gaps = 68/479 (14%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           + KG K     YN+L   YC                   QG +     +L  M +    P
Sbjct: 423 RDKGIKVTVYPYNSLINGYC------------------KQGSLDRARGLLSGMVKEGLTP 464

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
              +Y+ +I  L    +L +C+ +  EM +  +  +   +  LI G CK  ++     LF
Sbjct: 465 TAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLF 524

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            +M ++ ++ +   + V+IEG    G + KA  L   +V+ G + D   Y S+I GLC  
Sbjct: 525 DKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLT 584

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVN-----PLLVCCAEMGRMDNFFKLLAQM------- 369
               KA +        DL   ++ +N      LL      GR    + L  +M       
Sbjct: 585 SGVSKANEFVA-----DLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKL 639

Query: 370 EKLKFSVAA-------DLEK------------------FFEFLV---GKEERIMMALDVF 401
           + + F++         D EK                  F+  ++    KEE ++ AL+ +
Sbjct: 640 DLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCW 699

Query: 402 EELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
           +++   GYS +   + +L+  L + G +  A  L  +M   N+  N  +++  +      
Sbjct: 700 DQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATE 759

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
           GD+ +A + H+ +++   + S+ ++N L KGLCK G+I  A+ L+   +      P    
Sbjct: 760 GDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMSK-ITESGFSPDCIS 817

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           Y+  I  +C+ G+  K  E+ NEM  +G  P+ V  +  I     HG  ++A  ++TN+
Sbjct: 818 YSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNM 876



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 155/345 (44%), Gaps = 6/345 (1%)

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           ++  L K  +     +LF +M ++G+ +D  +Y   I        +  A  L+  +   G
Sbjct: 192 ILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEG 251

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            +A    YN ++ GLC+  +  +A ++  V V   +  D  T   L+     M  ++   
Sbjct: 252 VKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMAL 311

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGAL 422
           ++   M +L F  +     F    + K+E +  A  +  +L   G   +V  YN L+  L
Sbjct: 312 RITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKL 371

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            +      A  LF +M G  LE N ++++I I    + G I +A    +K+ +     +V
Sbjct: 372 CKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTV 431

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEV 540
             YN L  G CK G +D A  L+    G V  G  PT   Y+  I  +CR+G+    +E+
Sbjct: 432 YPYNSLINGYCKQGSLDRARGLLS---GMVKEGLTPTAASYSPLIAGLCRNGDLSSCMEL 488

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
             EM + G   N    +A+I+G CK   ++EA ++F  + +  ++
Sbjct: 489 HREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVI 533



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 101/460 (21%), Positives = 189/460 (41%), Gaps = 43/460 (9%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++ +KM ++    D + YTA IR     RNLD    +   M+ + V+A  + Y  L+ GL
Sbjct: 207 DLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGL 266

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY---- 304
           CK  RV    E+   M   G+  D   Y  L+ G     ++  A  +  D++  G+    
Sbjct: 267 CKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSE 326

Query: 305 -------------------------RADLGI------YNSIIGGLCRVKQFDKAYKLFEV 333
                                      DLG+      YN++I  LC+ ++FD A +LF+ 
Sbjct: 327 ANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKE 386

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KE 391
                L P+  T   L+    + G +++   L  +M      V   +  +   + G  K+
Sbjct: 387 MAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVT--VYPYNSLINGYCKQ 444

Query: 392 ERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
             +  A  +   +  +G + +   Y+ L+  L   G++   + L  +M    +  N+ +F
Sbjct: 445 GSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTF 504

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +  I    +   + EA    +K+I+ + +P+   +N + +G C +G I  A  L  D + 
Sbjct: 505 TALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLY-DQMV 563

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
            +   P  + Y   I  +C +    K  E + ++       N    +A++ G  + G   
Sbjct: 564 EMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFT 623

Query: 571 EARKVFTNLRER--KLLTEANTIVYDEILIEHMKKKTADL 608
           E   ++  +  R  KL   + TI+    L +H K+K+  L
Sbjct: 624 ETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVL 663



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 125/290 (43%), Gaps = 2/290 (0%)

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           + SG   +    + I+  L +++QF  A  LF+  +Q  +  D       +    E   +
Sbjct: 178 LSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNL 237

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNIL 418
           D    L+ +ME      +A       + + K  R+  A++V   +   G ++  + Y  L
Sbjct: 238 DGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTL 297

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +     + E++ AL +   M  L    +  + S  I    +   + EA     K+ ++  
Sbjct: 298 VYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM 357

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           VP+V AYN L   LCK    D A  L ++  G     P E  YA+ I  +C+ G  E  +
Sbjct: 358 VPNVFAYNALIDKLCKNERFDDADRLFKEMAGR-GLEPNEVTYAILIHALCKRGMIEDAL 416

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
            + ++M  +G        +++I+G CK G+L+ AR + + + +  L   A
Sbjct: 417 CLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTA 466



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 106/226 (46%), Gaps = 9/226 (3%)

Query: 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
            L V  E +G   S+VP YN+LM  L +   V++A+ +   M  + +  + +++   +  
Sbjct: 242 GLVVRMESEGVKASAVP-YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYG 300

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASG 515
                ++  A    + +I +  VPS A  + +   L K   ++ A  L   C LG++   
Sbjct: 301 FCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLA--CKLGDLGMV 358

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P  F Y   I  +C++   +    +  EM   G  PNEV  + +I  +CK G +E+A  +
Sbjct: 359 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 418

Query: 576 FTNLRERKLLTEANTIVYDEILIEHMKKKTADL---VLSGLKFFGL 618
           F  +R++ +  +     Y+ ++  + K+ + D    +LSG+   GL
Sbjct: 419 FDKMRDKGI--KVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGL 462



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 25/116 (21%), Positives = 55/116 (47%)

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           + ++  +I+ L     +   + +  ++ +     D ++Y T+I  LCK G + +  EL+ 
Sbjct: 780 IVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWN 839

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           EM   G+  D   Y + I      G+  KA  +  +++ SG + +   Y +++ G+
Sbjct: 840 EMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGI 895



 Score = 42.0 bits (97), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/102 (22%), Positives = 48/102 (47%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+I E ++++ K+  +   PD  +Y+ +I  L    +++    +W EM    ++ DV+AY
Sbjct: 794 GKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAY 853

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
              I      G   +   ++  M  +G+  +   Y  L+ G+
Sbjct: 854 NIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGI 895


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 193/450 (42%), Gaps = 46/450 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + +   I+ K+ ++  KPD F YT+MI      R+LD+   ++  M ++  E +   Y
Sbjct: 242 GNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATY 301

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI GLC  GRV    +   EM  +G+L     +   I  L   G++  A  +  D+  
Sbjct: 302 STLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKK 361

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + ++  Y S+I G  RV +   A  LF    +D + P+  T N L+    E   +D+
Sbjct: 362 KGCKPNVYTYTSLISGQ-RVSRM--AIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDS 418

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFL-----VGKEERIMMALDVFEELKGKGYSSVPIYN 416
              +   M   K     +   + E +     +G  E+ M  L     LKG+   ++  YN
Sbjct: 419 ALIVFNMMG--KHGCLPNTSSYNELIRGYCTIGDTEKAMSMLT--NMLKGRPTPTLVTYN 474

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           I++    + G+   A+ +   M+    + +  S++  I    +   +  A    N++++ 
Sbjct: 475 IIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDR 534

Query: 477 SQVPSVAAYNCLTKGLCKIGEID-AAMMLVR----DCLGNVAS----------------- 514
              P+   Y  L  G CK  ++D AA ML R     C  NV +                 
Sbjct: 535 GLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGA 594

Query: 515 ------------GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
                        P    Y+  I  +C +G     +E+ N+M + GC PN    S++I  
Sbjct: 595 EELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQA 654

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           + + G +EEA ++F+ L+++ L+ +  T V
Sbjct: 655 LGQEGRVEEAEEMFSELKKQGLIPDEVTYV 684



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 124/539 (23%), Positives = 232/539 (43%), Gaps = 31/539 (5%)

Query: 50  QSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVT 109
           + PP       P   P + TQ  P   K    +R LS +A          Q  W  Q  T
Sbjct: 52  EKPPPEDPVGSPSQRPEELTQPRPR--KATLTKRALSCLA----------QPDW--QRST 97

Query: 110 ELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCL--SRNN- 166
            L+ L   TP+  A V      P  A +F  +  ++  +K+   ++  +A  L  SR+  
Sbjct: 98  LLASL---TPEKAAFVAARCLVPVRALEFLLFLSREHSHKYGPDTFAKVAMRLLESRDRP 154

Query: 167 --LFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLR 224
             + RA   + +   ++  + + L  L+   +   K  +F YT ++  L         + 
Sbjct: 155 AAVGRARIHMIKSCSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMD 214

Query: 225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
            + ++ ++ ++ +++ Y ++I  LCK G V     +  ++ ++G+  D   Y  +I G  
Sbjct: 215 RYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYC 274

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
               +  A ++   + + G   +   Y+++I GLC   + ++A        +  + P   
Sbjct: 275 RNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVH 334

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEK--LKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
           T    +V   +MGR+++ +K+   M+K   K +V       +  L+  +    MA+ +F 
Sbjct: 335 TFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYT-----YTSLISGQRVSRMAIGLFH 389

Query: 403 ELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
            +   G   +   YN LM  L+E  E+  AL +F  M       N+ S++  I+ +   G
Sbjct: 390 RMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIG 449

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
           D  +A      +++    P++  YN + KG C  G+ D A+ ++     N    P E+ Y
Sbjct: 450 DTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKAN-GCQPDEWSY 508

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
              I   C+  + E    + NEM   G  PNEV  +A+ISG CK   L+ A ++   ++
Sbjct: 509 TELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMK 567



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 117/514 (22%), Positives = 214/514 (41%), Gaps = 61/514 (11%)

Query: 134 LASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIA-------- 185
           +A   FH   +  G   N  +YNAL   L  N    +A  V  +M   G +         
Sbjct: 383 MAIGLFHRMSRD-GVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNEL 441

Query: 186 -----------EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
                      + + +L  M +    P +  Y  +I+      + D  +RV E MK +  
Sbjct: 442 IRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGC 501

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           + D  +Y  LI G CK  ++     +F EM + G+  +   Y  LI G   + K+  A  
Sbjct: 502 QPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAAR 561

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           +L+ +  SG R ++  YN +I GL +   F  A +L +V +++ ++PD  T + ++    
Sbjct: 562 MLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLC 621

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYSSV 412
             G +    ++  +M  +K     +L  +   +  +G+E R+  A ++F ELK +G   +
Sbjct: 622 NNGAIPLALEMFNKM--VKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGL--I 677

Query: 413 P---IYNILMGALLEIGEVKKALYLFGKM----------------RGLNLEV-------- 445
           P    Y  ++   +  G+V +A    G+M                +GL  E+        
Sbjct: 678 PDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVAL 737

Query: 446 -NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            N+ S S      + + D++      +K+ E+    S   Y+ L   L + G    A  L
Sbjct: 738 PNAASTS-TFDDQIINKDVISVLS--SKLAELDFELSRQLYDALLSRLSRSGRWFEANNL 794

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
            R  +   +  P +  Y   ++ + R+ + +  ++V   M+ + C  +      +I  +C
Sbjct: 795 YRSMVSQ-SQCPNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLC 853

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           +    +EAR VF  +  R L   A+ IV+  ILI
Sbjct: 854 QLHRRKEARFVFEKMLSRAL--NADEIVW-TILI 884


>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 822

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 108/429 (25%), Positives = 195/429 (45%), Gaps = 17/429 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E  ++++    N C P+V  Y  +I     + +L    RV+EE+K       +  Y
Sbjct: 219 GKVEEGRKLIDDRWGNGCVPNVVFYNVIIDGYCKKGDLKRATRVFEELKLKGFLPTLETY 278

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G CK G+     +L  EM   G+ ++  ++  +I+     G V KA ++++ + +
Sbjct: 279 GALIDGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRMMTE 338

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM-- 359
            G   D+  YN +I   C   +  +A +  E   +  L P+  +  PL+    + G    
Sbjct: 339 MGCEPDITTYNILINFSCSGGRIKEAEEFLERAKERTLLPNKFSYTPLMHAYCKQGDYVM 398

Query: 360 --DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKG-YSSVPI 414
             D  FK+    +K       DL  +  F+ G      I +AL V E++  KG +    I
Sbjct: 399 ASDMLFKIAETGDK------PDLVSYGAFIHGSVAGGEIDVALMVREKMMEKGVFPDAQI 452

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YN+LM  L + G    A  L  +M  LNL+ ++  ++  +   + + ++ +A E    ++
Sbjct: 453 YNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYATLVDGFIRNNELDKATELFEVVM 512

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                P V  YN + KGLCK G++  A+  V   +      P E+ ++  I    +  + 
Sbjct: 513 SKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNK-MKIANHAPDEYTHSTVIDGYVKQHDL 571

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           +  +++  +M ++   PN V  +++I+G CK   +  A KVF  ++   L  E N + Y 
Sbjct: 572 DSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVFRAMQSFNL--EPNVVTY- 628

Query: 595 EILIEHMKK 603
            ILI    K
Sbjct: 629 TILIGGFSK 637



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 98/417 (23%), Positives = 191/417 (45%), Gaps = 26/417 (6%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL----DACLRVWEEMKKDLVE 235
           S GRI E  E LE+ +     P+ F+YT ++     + +     D   ++ E   K    
Sbjct: 357 SGGRIKEAEEFLERAKERTLLPNKFSYTPLMHAYCKQGDYVMASDMLFKIAETGDK---- 412

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            D+++Y   I G   GG +     +  +M E G+  D  IY VL+ GL  +G+   A  L
Sbjct: 413 PDLVSYGAFIHGSVAGGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLL 472

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
           L +++D   + D  +Y +++ G  R  + DKA +LFEV +   + P     N ++    +
Sbjct: 473 LSEMLDLNLQPDAYMYATLVDGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCK 532

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-S 411
            G+M +    ++ + K+K +  A  E     ++    K+  +  AL +F ++  + Y  +
Sbjct: 533 CGKMTD---AVSYVNKMKIANHAPDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQKYKPN 589

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           V  Y  L+    +I ++ +A  +F  M+  NLE N ++++I I    ++G   +A     
Sbjct: 590 VVAYTSLINGFCKIADMSRAEKVFRAMQSFNLEPNVVTYTILIGGFSKTGKPEKAASFFE 649

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM--------MLVRDCLGNVAS-GPTEF--K 520
            ++  + +P+   ++ L  GL  I      +         L+ D    + S G ++    
Sbjct: 650 LMLMNNCLPNDTTFHYLINGLTNITNTTLLIEKNEENDRSLILDFFATMISEGWSQVIAT 709

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
           Y   I+ +C+ G  +    +  +M ++G   + V  SA++ G+C+ G  +E R + +
Sbjct: 710 YNSIIVCLCKHGMVDTAQLLQTKMLRKGFLMDSVCFSALLHGLCQTGKSKEWRNIIS 766


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 190/425 (44%), Gaps = 12/425 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +   + +++ M     KP +  Y ++++ L   R  D    V+  M +  V  DV ++
Sbjct: 206 GDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSF 265

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G C+ G V    + ++EM+   +  D   +  LI      G++  A   L+++  
Sbjct: 266 NILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKG 325

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D  IY  +IGG CR     +A ++ +  V     PD  T N LL    +  R+ +
Sbjct: 326 LGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLD 385

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYNIL 418
             KLL +ME+    V  DL  F   + G  ++     AL +F+ L + +    V  YN L
Sbjct: 386 AEKLLNEMEER--GVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSL 443

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  +   G++ KA  L+  M    +  N +++SI I  H E G + +A    +++++   
Sbjct: 444 IDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGN 503

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILH-VCRSGEAEK 536
           +P++  YN + KG C+ G +      ++     NV      F    T++H   +      
Sbjct: 504 LPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFN---TLIHGYIKEENMHG 560

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
              V N M +E   P+ V  + II+G  + G +++A +VF  + +  +  E +   Y  +
Sbjct: 561 AFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGI--EPDRYTYMSL 618

Query: 597 LIEHM 601
           +  H+
Sbjct: 619 INGHV 623



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 178/409 (43%), Gaps = 13/409 (3%)

Query: 202 DVFAYTAMIRVLAAERNL--DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +V AYT  I V +  + L  D    V  EM+K  V  DV+ +  LI    + G V     
Sbjct: 154 EVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIA 213

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L   M   G+      Y  +++GL    +  KA ++ + +       D+  +N +IGG C
Sbjct: 214 LVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFC 273

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           RV +  +A K ++      + PD  + + L+   +  G MD+    L +M+ L       
Sbjct: 274 RVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGV 333

Query: 380 LEKFFEFLVG---KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLF 435
           +   +  ++G   +   +  AL V +E+ G G    V  YN L+  L +   +  A  L 
Sbjct: 334 I---YTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLL 390

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M    +  +  +F+  I  +   G+   A +  + ++     P V  YN L  G+C+ 
Sbjct: 391 NEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRK 450

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G++  A  L  D        P    Y++ I   C  G+ E     L+EM ++G  PN   
Sbjct: 451 GDLAKANELWDDMHAREIL-PNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRT 509

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIVYDEILIEHM 601
            ++II G C+ G +++ ++    +R+  +   L   NT+++  I  E+M
Sbjct: 510 YNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENM 558



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/487 (22%), Positives = 202/487 (41%), Gaps = 44/487 (9%)

Query: 100 QFQWGPQVVTELSKLRRVTPDLVAEVLKVEN----NPTLASKFFHWAGKQKGYKHNFASY 155
           +F     V++E+ K R V PD+V   + ++         A+     +   +G K    +Y
Sbjct: 172 EFDGADTVISEMEK-RCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTY 230

Query: 156 NALAYCLSRNNLFRAADQVPELMDS-------------------QGRIAEMLEILEKMRR 196
           N++   L ++  F  A +V   MD                     G + E ++  ++M+ 
Sbjct: 231 NSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQH 290

Query: 197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
               PDV +++ +I + +    +D       EMK   +  D + Y  +I G C+ G +  
Sbjct: 291 RYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSE 350

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
              +  EM   G L D   Y  L+ GL  + ++  A  LL ++ + G   DL  + ++I 
Sbjct: 351 ALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIH 410

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME------ 370
           G CR   F+ A +LF+  ++  L PD  T N L+      G +    +L   M       
Sbjct: 411 GYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILP 470

Query: 371 -KLKFSVAAD--LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE 427
             + +S+  D   EK      G+ E     LD  E +K     ++  YN ++      G 
Sbjct: 471 NHITYSILIDSHCEK------GQVEDAFGFLD--EMVKKGNLPNIRTYNSIIKGYCRSGN 522

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PSVAAYN 486
           VKK      KMR  N+  + ++F+  I  +++  ++  A    N I+E   V P    YN
Sbjct: 523 VKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFN-IMEKEMVRPDAVTYN 581

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            +  G  + G +  A  + +  +G+    P  + Y   I     +G +++  ++ +EM  
Sbjct: 582 MIINGFSEQGNMQDAGRVFKG-MGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIH 640

Query: 547 EGCPPNE 553
            G  P++
Sbjct: 641 RGFAPDD 647



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 161/371 (43%), Gaps = 39/371 (10%)

Query: 235 EADVMAYVTLIM--GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
           +++V AY   IM    CK         +  EM++  +  D   + VLI+     G V  A
Sbjct: 152 DSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAA 211

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
             L+  + + G +  +  YNS++ GLC+ ++FDKA ++F    Q  +APD  + N L+  
Sbjct: 212 IALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGG 271

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSV 412
              +G +    K   +M+     V  D+  F                             
Sbjct: 272 FCRVGEVKEAVKFYKEMQHRY--VTPDVVSF----------------------------- 300

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
              + L+G     GE+  A     +M+GL L  + + +++ I     +G + EA    ++
Sbjct: 301 ---SCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDE 357

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           ++    +P V  YN L  GLCK   +  A  L+ + +      P    +   I   CR G
Sbjct: 358 MVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNE-MEERGVTPDLCTFTTLIHGYCRQG 416

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
             E  +++ + + ++   P+ V  +++I GMC+ G L +A +++ ++  R++L   N I 
Sbjct: 417 NFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREIL--PNHIT 474

Query: 593 YDEILIEHMKK 603
           Y  ++  H +K
Sbjct: 475 YSILIDSHCEK 485



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 147/349 (42%), Gaps = 9/349 (2%)

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           E FR + ++ + +  +    L+  L   G    A +  + ++ S    +    N ++   
Sbjct: 108 EAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSY 167

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C+  +FD A  +     +  + PD  T N L+      G +D    L+  M      +  
Sbjct: 168 CKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANR--GLKP 225

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
            +  +   L G  K  R   A +VF  +     +  V  +NIL+G    +GEVK+A+  +
Sbjct: 226 GIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFY 285

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M+   +  + +SFS  I      G++  A     ++  +  VP    Y  +  G C+ 
Sbjct: 286 KEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRA 345

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G +  A+  VRD +      P    Y   +  +C+        ++LNEM + G  P+   
Sbjct: 346 GSMSEALR-VRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCT 404

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
            + +I G C+ G  E A ++F  L  ++L    + + Y+  LI+ M +K
Sbjct: 405 FTTLIHGYCRQGNFENALQLFDTLLRQRL--RPDVVTYNS-LIDGMCRK 450



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 135/312 (43%), Gaps = 8/312 (2%)

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
           ++ +LI       K  +A +  + L+D          N+++  L R      A + + + 
Sbjct: 89  VFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEAYRLV 148

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK---LKFSVAADLEKFFEFLVGKE 391
           +  D   +  T+N ++    +    D    ++++MEK       V  ++     F  G  
Sbjct: 149 LSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGD- 207

Query: 392 ERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
             +  A+ + + +  +G    +  YN ++  L +     KA  +F  M   ++  +  SF
Sbjct: 208 --VDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSF 265

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +I I      G++ EA + + ++      P V +++CL     + GE+D A   +R+  G
Sbjct: 266 NILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKG 325

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
            +   P    Y + I   CR+G   + + V +EM   GC P+ V  + +++G+CK   L 
Sbjct: 326 -LGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLL 384

Query: 571 EARKVFTNLRER 582
           +A K+   + ER
Sbjct: 385 DAEKLLNEMEER 396


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 179/369 (48%), Gaps = 2/369 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G  +  L++L KM     K DVF Y+ +I  L  +  +DA + +++EM+   +++ V+ 
Sbjct: 196 SGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT 255

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +L+ GLCK G+   G  L ++M    I+ +   + VL++  V EGK+ +A +L K+++
Sbjct: 256 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMI 315

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   ++  YN+++ G C   +  +A  + ++ V++  +PD  T   L+     + R+D
Sbjct: 316 TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVD 375

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILM 419
           +  K+   + K      A           +  +I +A ++F+E+   G    V  Y IL+
Sbjct: 376 DGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILL 435

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L + G+++KAL +F  ++   +++  + ++  I+   + G + +A      +      
Sbjct: 436 DGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVK 495

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+V  Y  +  GLCK G +  A +L+R  +    + P +  Y   I    R G+     +
Sbjct: 496 PNVMTYTVMISGLCKKGSLSEANILLRK-MEEDGNAPNDCTYNTLIRAHLRDGDLTASAK 554

Query: 540 VLNEMTQEG 548
           ++ EM   G
Sbjct: 555 LIEEMKSCG 563



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 189/406 (46%), Gaps = 8/406 (1%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PD   +  +I+ L  E  +   + + + M ++  + DV+ Y +++ G+C+ G      +
Sbjct: 145 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALD 204

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L R+M+E  +  D   Y  +I+ L  +G +  A  L K++   G ++ +  YNS++ GLC
Sbjct: 205 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 264

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +  +++    L +  V  ++ P+  T N LL    + G++    +L  +M  +   ++ +
Sbjct: 265 KAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEM--ITRGISPN 322

Query: 380 LEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFG 436
           +  +   + G   + R+  A ++ + + + K    +  +  L+     +  V   + +F 
Sbjct: 323 IITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 382

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            +    L  N++++SI +Q   +SG I  A E   +++    +P V  Y  L  GLC  G
Sbjct: 383 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 442

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           +++ A+ +  D L           Y   I  +C+ G+ E    +   +  +G  PN +  
Sbjct: 443 KLEKALEIFED-LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 501

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
           + +ISG+CK G+L EA  +   + E       N   Y+ ++  H++
Sbjct: 502 TVMISGLCKKGSLSEANILLRKMEEDG--NAPNDCTYNTLIRAHLR 545



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 205/437 (46%), Gaps = 11/437 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+++E + ++++M  N C+PDV  Y +++  +    +    L +  +M++  V+ADV  
Sbjct: 161 EGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFT 220

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I  LC+ G +     LF+EM+  GI      Y  L+ GL   GK      LLKD+V
Sbjct: 221 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 280

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 ++  +N ++    +  +  +A +L++  +   ++P+  T N L+       R+ 
Sbjct: 281 SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLS 340

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
               +L  M + K S   D+  F   + G    +R+   + VF  +  +G  ++   Y+I
Sbjct: 341 EANNMLDLMVRNKCS--PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSI 398

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+    + G++K A  LF +M    +  + +++ I +    ++G + +A E    + +  
Sbjct: 399 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 458

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYALTILHVCRSGEAE 535
               +  Y  + +G+CK G+++ A  L     C G     P    Y + I  +C+ G   
Sbjct: 459 MDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKG---VKPNVMTYTVMISGLCKKGSLS 515

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI-VYD 594
           +   +L +M ++G  PN+   + +I    + G L  + K+   ++      +A++I +  
Sbjct: 516 EANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVI 575

Query: 595 EILIEHMKKKTADLVLS 611
           ++L+  MK+ T    LS
Sbjct: 576 DMLLSAMKRLTLRYCLS 592



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 115/470 (24%), Positives = 210/470 (44%), Gaps = 68/470 (14%)

Query: 146 KGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           +G   N  +YN L   YC+                  Q R++E   +L+ M RN C PD+
Sbjct: 317 RGISPNIITYNTLMDGYCM------------------QNRLSEANNMLDLMVRNKCSPDI 358

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             +T++I+     + +D  ++V+  + K  + A+ + Y  L+ G C+ G++    ELF+E
Sbjct: 359 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 418

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI--YNSIIGGLCRV 321
           M  +G+L D   YG+L++GL   GK+ KA ++ +DL  S  + DLGI  Y +II G+C+ 
Sbjct: 419 MVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKS--KMDLGIVMYTTIIEGMCKG 476

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            + + A+ LF       + P+  T   ++    + G +     LL +ME+      A  +
Sbjct: 477 GKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE---DGNAPND 533

Query: 382 KFFEFLVGKEER---IMMALDVFEELKGKGYSSVP-----IYNILMGALLEIGEVKKALY 433
             +  L+    R   +  +  + EE+K  G+S+       + ++L+ A+  +  ++  L 
Sbjct: 534 CTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSAMKRL-TLRYCLS 592

Query: 434 LFGKMRGLNLE--------VNSLSFSIAIQCHVESGDI---------LEACECHNKIIEM 476
              K R   LE        ++SL+F     C+  +  +         + + E +  + ++
Sbjct: 593 KGSKSRQDLLELSGSEKIRLSSLTFVKMFPCNTITTSLNVNTIEARGMNSAELNRDLRKL 652

Query: 477 SQVPSVAAYN------CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE-FKYALTILHVC 529
            +   +  +        +T  L   G  DA   L+ D        PT+   YA     + 
Sbjct: 653 RRSSVLKKFKNRDVRVLVTNELLTWGLEDAECDLMVD-----LELPTDAVHYAHRAGRMR 707

Query: 530 RSGEAEKII---EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           R G    ++   E+  EM Q G  PN +  S++I G CK   L+EA ++ 
Sbjct: 708 RPGRKMTVVTAEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQML 757



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 196/422 (46%), Gaps = 11/422 (2%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + + + ++M R+   P +  ++     +A  +  +  L   ++++ + +  ++     +I
Sbjct: 61  DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 120

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              C+  +    + +  ++ + G   D   +  LI+GL  EGKV +A  L+  +V++G +
Sbjct: 121 NCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQ 180

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  YNSI+ G+CR      A  L     + ++  D  T + ++      G +D    L
Sbjct: 181 PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 240

Query: 366 LAQMEK--LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALL 423
             +ME   +K SV          L    +    AL + + +  +   +V  +N+L+   +
Sbjct: 241 FKEMETKGIKSSVVT-YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 299

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G++++A  L+ +M    +  N ++++  +  +     + EA    + ++     P + 
Sbjct: 300 KEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIV 359

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDC--LGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
            +  L KG C +  +D  M + R+    G VA+  T   Y++ +   C+SG+ +   E+ 
Sbjct: 360 TFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVT---YSILVQGFCQSGKIKLAEELF 416

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
            EM   G  P+ +    ++ G+C +G LE+A ++F +L++ K+  +   ++Y  I IE M
Sbjct: 417 QEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM--DLGIVMYTTI-IEGM 473

Query: 602 KK 603
            K
Sbjct: 474 CK 475



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/354 (20%), Positives = 142/354 (40%), Gaps = 25/354 (7%)

Query: 229 MKKDLVEADVMAYVTLIMGLCKG--GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
           +K   +  D++  ++     C+     +  G+  FRE   +GI+               +
Sbjct: 12  LKTGSLRTDLLCTISSFFSSCERDFSSISNGNVCFRERLRSGIV---------------D 56

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
            K   A  L ++++ S     L  ++     + R KQF+      +    + +A +  T+
Sbjct: 57  IKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTL 116

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL 404
           N ++ C     +    + +L ++ KL +    D   F   + G   E ++  A+ + + +
Sbjct: 117 NIMINCFCRCCKTCFAYSVLGKVMKLGYE--PDTTTFNTLIKGLFLEGKVSEAVVLVDRM 174

Query: 405 KGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
              G    V  YN ++  +   G+   AL L  KM   N++ +  ++S  I      G I
Sbjct: 175 VENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCI 234

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN-VASGPTEFKYA 522
             A     ++       SV  YN L +GLCK G+ +   +L++D +   +      F   
Sbjct: 235 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 294

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           L +    + G+ ++  E+  EM   G  PN +  + ++ G C    L EA  + 
Sbjct: 295 LDVF--VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 346


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/415 (23%), Positives = 191/415 (46%), Gaps = 47/415 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL-AAERNLDACLRVWEEMKKDLVEADVMA 240
           GR+ E + I +KMR + C P V  YT ++  L  + R ++A + ++ EM++   E ++  
Sbjct: 53  GRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEA-INLFSEMRERGCEPNIHT 111

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I  +CK  ++  G  +  EM E G++     Y  LI+G   EG V  A ++L  + 
Sbjct: 112 YTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMH 171

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +    +   YN +I G CR K   +A  L    ++  L P   T N L+    ++G +D
Sbjct: 172 SNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLD 231

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYNI 417
           + ++LL  M +                                        VP    Y++
Sbjct: 232 SAYRLLNLMNE-------------------------------------NGVVPDQWTYSV 254

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
            +  L + G +++A  LF  ++   ++ N + ++  I  + ++G + +A    ++++   
Sbjct: 255 FIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTED 314

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVCRSGEAE 535
            +P+ + YN L  GLCK  ++  A++L+   +  G   + PT   Y + I+ + + G+ +
Sbjct: 315 CLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPT---YTILIVAMLKEGDFD 371

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
               +L++M   G  P+  I +A I   C  G ++EA  + + + ER ++ +A T
Sbjct: 372 YAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALT 426



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 195/441 (44%), Gaps = 28/441 (6%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           +KG   +  +YNAL   YC                   +G +    EIL+ M  N C P+
Sbjct: 137 EKGLVPSVPTYNALIDGYC------------------KEGMVEAAQEILDLMHSNSCNPN 178

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
              Y  +I     ++N+   + +  +M +  +   V+ Y +LI G CK G +   + L  
Sbjct: 179 ERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLN 238

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            M ENG++ D+  Y V I+ L  +G++ +A  L   L + G +A+  IY ++I G C+  
Sbjct: 239 LMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAG 298

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           + D A  L +  + +D  P+ ST N L+    +  ++     L+  M +           
Sbjct: 299 KMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYT 358

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
                + KE     A  + +++   GY   V IY   + A    G +K+A  +   M   
Sbjct: 359 ILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFER 418

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            +  ++L++++ I  +   G +  A +   ++ +    PS   Y+CL K L K  E+   
Sbjct: 419 GVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLK-EELTKK 477

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
              V  C     S P  F +A  +  V +  + E  +E+  +M + GC PN    + +I 
Sbjct: 478 YKNVALC----DSIPNVF-FA-DVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLII 531

Query: 562 GMCKHGTLEEARKVFTNLRER 582
           G+CK G L  A+K+F ++ ER
Sbjct: 532 GLCKVGRLGVAQKLFDHMNER 552



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 107/275 (38%), Gaps = 50/275 (18%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPEL---------------MDSQGRIAEM 187
             GY+ +   Y A   A+C +R N+  A D +  +               +D+ G +  +
Sbjct: 382 SSGYQPDVYIYTAFIHAFC-TRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLL 440

Query: 188 ---LEILEKMRRNLCKPDVFAYTAMIRVLAAE------RNLDAC---------------- 222
               ++L++M    C P    Y+ +I+ L  E      +N+  C                
Sbjct: 441 NPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWK 500

Query: 223 -------LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
                  L ++E+M +     ++  Y  LI+GLCK GR+    +LF  M E G+    AI
Sbjct: 501 MMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAI 560

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           Y  L+      G  G A  L+  +++ G+   L   N +  GL      +KA  +F   +
Sbjct: 561 YNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLL 620

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           Q     D      L+    + G  D   +LL  ME
Sbjct: 621 QCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVME 655


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/457 (23%), Positives = 204/457 (44%), Gaps = 28/457 (6%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           GY  +  +YNA+   LS  +L  A                    L  M R+   P+V+ Y
Sbjct: 113 GYAPSVPAYNAVLLALSDASLPSAR-----------------RFLSSMLRHGVAPNVYTY 155

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             ++R L A   L+  + V  +M+      + + Y TL+   C+ G +     +   M+E
Sbjct: 156 NILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMRE 215

Query: 267 NG-ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
            G    +   +  ++ GL   G++  A  +  ++V  G   D+  YN+++ G C+V    
Sbjct: 216 EGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLH 275

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           ++  +F    Q  L PD  T   L+    + G ++    L+AQM +    +    E  F 
Sbjct: 276 ESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN---EVTFT 332

Query: 386 FLVG---KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
            L+    K+  +  AL   EE++  G   SV  YN L+    ++G +  A  L  +M   
Sbjct: 333 ALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAK 392

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            ++ + +++S  I  + + G++  A + + K+++   +P    Y+ L +GLC+   ++ A
Sbjct: 393 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 452

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
             L  + L  +   P EF Y   I   C+ G  EK + + +EM ++G  P+ V  S +I+
Sbjct: 453 CELFENML-QLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLIN 511

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           G+ K    +EA ++   L     + +   I YD +++
Sbjct: 512 GLSKSARTKEAHRLLFKLYHEDPVPD--NIKYDALML 546



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 174/394 (44%), Gaps = 29/394 (7%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + + + ++ +MR    + +   +TA+I     +  LD  L   EEM+K  ++  V+ Y
Sbjct: 307 GNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCY 366

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G CK GR+    EL REM+   +  D   Y  +I G    G +  A  L + ++ 
Sbjct: 367 NALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLK 426

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   Y+S+I GLC  K+ + A +LFE  +Q  + PD  T   L+    + G ++ 
Sbjct: 427 KGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEK 486

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI----- 414
              L  +M  ++  V  D+  +   + G  K  R   A      L  K Y   P+     
Sbjct: 487 ALSLHDEM--IRKGVLPDVVTYSVLINGLSKSARTKEA----HRLLFKLYHEDPVPDNIK 540

Query: 415 YNILM-----------GALLE----IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           Y+ LM            ALL+     G +K+A  ++  M   N +++   +SI I  H  
Sbjct: 541 YDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCR 600

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
            G++ +A   H +++     P+  +   L +GL + G +  A   ++D L        E 
Sbjct: 601 GGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEA 660

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
             AL  L+  + G  + +I+VL  M ++G  P+ 
Sbjct: 661 SKALIDLNR-KEGNVDALIDVLCGMARDGLLPSS 693



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 4/198 (2%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           +V  YNIL+ AL   G +++A+ + G MRG     N+++++  +     +G++  A    
Sbjct: 151 NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 210

Query: 471 NKIIEMSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
           + + E     P++  +N +  GLCK G ++ A   V D +      P    Y   +   C
Sbjct: 211 SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARK-VFDEMVREGLAPDVVSYNTLLSGYC 269

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           + G   + + V +EMTQ G  P+ V  +++I   CK G LE+A  +   +RER L    N
Sbjct: 270 KVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGL--RMN 327

Query: 590 TIVYDEILIEHMKKKTAD 607
            + +  ++    KK   D
Sbjct: 328 EVTFTALIDGFCKKGFLD 345



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 104/218 (47%), Gaps = 5/218 (2%)

Query: 393 RIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGL-NLEVNSLSF 450
           R+  A+ V  +++G G +   + YN L+ A    GE+  A  +   MR   N + N ++F
Sbjct: 167 RLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTF 226

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +  +    ++G +  A +  ++++     P V +YN L  G CK+G +  ++ +  + + 
Sbjct: 227 NSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSE-MT 285

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
                P    +   I   C++G  E+ + ++ +M + G   NEV  +A+I G CK G L+
Sbjct: 286 QRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLD 345

Query: 571 EARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADL 608
           +A      +  RK   + + + Y+ ++  + K    DL
Sbjct: 346 DALLAVEEM--RKCGIQPSVVCYNALINGYCKLGRMDL 381


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 201/421 (47%), Gaps = 30/421 (7%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVW---EEMKKDLVE-- 235
           QGR  +   +LE M     +P+V +Y  ++  L         L  W   EE+ +D++   
Sbjct: 23  QGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCK-------LERWHEAEELVRDMISRG 75

Query: 236 ----ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
                D++ Y TL+ G CK G+V    EL +E+   G+  D  +Y  ++  L    ++G+
Sbjct: 76  GRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGE 135

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A +LL++++ +G    L  +N++I G CR K  + A  L +      +  D  T N L+ 
Sbjct: 136 ALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMD 195

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFS-VAADLEKFFEFLVG--KEERIMMALDVFEELKGKG 408
              + GR+    +LL   E++K S  A D+  +  F+ G  K  +++ A  V E+++   
Sbjct: 196 GLCKAGRLQEAEQLL---ERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSD 252

Query: 409 YS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN-LEVNSLSFSIAIQCHVESGDILEA 466
           +  +V  YN ++  L + G++  AL +  +M   +   +N + +S  +    + G   EA
Sbjct: 253 HDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEA 312

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
                 +      P V  Y+ L  GLCK G+I+ A+  VR+ +      P    Y   + 
Sbjct: 313 RSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVRE-MAMEGCKPNAVTYCSLVH 371

Query: 527 HVCRSG---EAEKIIEVLNEMTQ--EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            +C  G   EAE+++E ++      + CPP+    +A+I G+CK G +++A K F  +R 
Sbjct: 372 GLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRS 431

Query: 582 R 582
           +
Sbjct: 432 Q 432



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/443 (25%), Positives = 199/443 (44%), Gaps = 18/443 (4%)

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M R  C P+   + A++   + +     C R+ E M    ++ +V++Y  L+ GLCK  R
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 254 VVRGHELFREMKENG--ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
                EL R+M   G     D   Y  L+ G    GKV ++ +LLK+++  G R D  +Y
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
             ++  LC+  +  +A +L E  ++    P   T N L+  C     ++    LL  M  
Sbjct: 121 TKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAA 180

Query: 372 LKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEV 428
               V AD+  +   + G  K  R+  A  + E +K  G +  V  Y+  +  L + G+V
Sbjct: 181 --SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKV 238

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP-SVAAYNC 487
             A  +  +MR  + + N ++++  +    +SG I  A E   ++        +V  Y+ 
Sbjct: 239 LNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYST 298

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           +  GLCK+G    A   V + +      P    Y+  +  +C++G+ E+ +E + EM  E
Sbjct: 299 VVDGLCKLGRTQEARS-VMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAME 357

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE---ANTIVYDEILIEHMKKK 604
           GC PN V   +++ G+C  G L EA ++   +       +    +   Y+ ++    K  
Sbjct: 358 GCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAG 417

Query: 605 TADLVLSGLKFFGLESKLKAKGC 627
             D     LKFF    +++++GC
Sbjct: 418 RID---DALKFF---QRMRSQGC 434



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 145/339 (42%), Gaps = 47/339 (13%)

Query: 129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEML 188
           E N  +A           G K +  +YN L      + L +A           GR+ E  
Sbjct: 165 EKNLEMADSLLQTMAAS-GVKADVVTYNTLM-----DGLCKA-----------GRLQEAE 207

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++LE+M+ + C PDV AY++ +  L     +    +V E+M+    + +V+ Y T++ GL
Sbjct: 208 QLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGL 267

Query: 249 CKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           CK G++    E+  +M   +G  ++   Y  +++GL   G+  +A  +++ +  +G R D
Sbjct: 268 CKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPD 327

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  Y+S++ GLC+  + ++A +       +   P+  T   L+      GR+        
Sbjct: 328 VVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRL-------- 379

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE 427
                                 + ER++  +            SV  YN L+G L + G 
Sbjct: 380 ---------------------AEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGR 418

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           +  AL  F +MR    + + +S+S  ++    SG  L+A
Sbjct: 419 IDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 130/296 (43%), Gaps = 19/296 (6%)

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMAL 398
           P+  T N L+   ++ GR  +  +LL  M      +  ++  +   L G  K ER   A 
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCERLLETMAA--RGIQPNVVSYNGLLEGLCKLERWHEAE 65

Query: 399 DVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           ++  ++  +G  S P    Y+ L+    + G+V+++  L  ++    L  ++L ++  + 
Sbjct: 66  ELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMA 125

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
              +S  + EA E   ++I     P++  +N L  G C+   ++ A  L++      ASG
Sbjct: 126 SLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQT---MAASG 182

Query: 516 PTE--FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
                  Y   +  +C++G  ++  ++L  M   GC P+ V  S+ + G+CK G +  A 
Sbjct: 183 VKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAH 242

Query: 574 KVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKL 629
           +V   +R+     + N + Y+ IL    K    D  L       +E    + GC L
Sbjct: 243 QVLEQMRDSD--HDPNVVTYNTILDGLCKSGKIDTALE-----MMEQMASSDGCGL 291


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 126/483 (26%), Positives = 209/483 (43%), Gaps = 40/483 (8%)

Query: 116 RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNN-------LF 168
           +++  LV  +L +  N   A  FF WAG ++ ++H   +YN     L R         LF
Sbjct: 54  QLSQRLVGVILHMVKNGESAMVFFGWAGTRQDFRHTVHTYNCFYEALIRTGQCEEAYRLF 113

Query: 169 RA---ADQVPELMD---------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE 216
           +     + +P+ +          + G++     + E+M     +P V     ++  L   
Sbjct: 114 KEKWPQELIPDSITYGILIRGLCNFGKLKLACSLYEEMVDRGLRPVVLTCKFLLNALCKS 173

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
            NL+  LR +E+M      A    +  LI GL +  RV      F EMK   I  +   Y
Sbjct: 174 GNLELALRYFEKMSSIPCAA---TWTILIDGLFRAIRVDEACYYFEEMKHTAI-PNNWTY 229

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
            V+I GLV  GKV +A  +L+++        L  Y S+IGG C+     KAY L E   +
Sbjct: 230 TVVINGLVKAGKVAEAERVLQEMP----VPTLANYTSVIGGHCKAGDMGKAYHLLEDMKR 285

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERI 394
                D  T N L+     +  +D  ++LL +M+   F    D+  +   + G  + +R+
Sbjct: 286 KGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDF--VPDIFTYDILIAGLCRAKRL 343

Query: 395 MMALDVFEELKGKG--YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
             A D+   L+ +     +V  YN L+    +   V  A  LF +M       + +++S 
Sbjct: 344 SEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYST 403

Query: 453 AIQCHVESGDILEACECHNKIIEM---SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
            I+    +G    A E H+ + EM     +P V  Y+ +  GLC+ GE+DAA  +    +
Sbjct: 404 LIRGLCNAG---RASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMV 460

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
            N    P    Y   I  +C++G        + EMT+ GC P+ V    +I G+C+    
Sbjct: 461 AN-GCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRT 519

Query: 570 EEA 572
           +EA
Sbjct: 520 DEA 522



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 115/526 (21%), Positives = 212/526 (40%), Gaps = 66/526 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           K+KGY+ +  +YN L +   R      A ++ E M S                     R+
Sbjct: 284 KRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRL 343

Query: 185 AEMLEILEKMR-RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           +E  ++L  +R  + C P+V +Y  +I   +    ++   +++ EM       DV+ Y T
Sbjct: 344 SEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYST 403

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           LI GLC  GR    H    EM    IL    +Y  +I GL   G++  A  +   +V +G
Sbjct: 404 LIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANG 463

Query: 304 YRADLGIYNSIIGGLCRVKQF-DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
            + +L +YNS+I GLC+  +  D   ++ E+T +   +PD  T   L+V      R D  
Sbjct: 464 CQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMT-ERGCSPDGVTYGTLIVGLCRWSRTDEA 522

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYNILMGA 421
             L  +  +    ++   E     ++     +  A  V   +   G S     Y  ++ +
Sbjct: 523 CDLYVRSLEQGIEIS---ETSCNVVIASLRCLEQAQRVLRVVLATGNSPTAFFYATVIES 579

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L +   + +A  L   M G  ++ +  +    +         + A     +++ +   PS
Sbjct: 580 LCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPS 639

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY---------------ALTIL 526
           V  Y+ L   L K G+   A +++R  + + +  P E  Y               A  +L
Sbjct: 640 VGTYSTLLNALFKAGKPSEAHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNVL 699

Query: 527 H--------------------VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
                                + R+   + + E+L EM +     NE   + +I G C+ 
Sbjct: 700 QELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLREMKRNEFVVNEATFNILIQGFCRL 759

Query: 567 GTLEEARKVFTNLRERKLLTEANTIV---YDEILIEHMKKKTADLV 609
           G  + A +V + +  +K+LT +  I+    DE+     ++++ DLV
Sbjct: 760 GQTDRAVRVLSEM--KKVLTPSAAIIKFLVDELARAEREQESKDLV 803



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 157/391 (40%), Gaps = 47/391 (12%)

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285
           W   ++D     V  Y      L + G+    + LF+E     ++ D   YG+LI GL  
Sbjct: 79  WAGTRQDF-RHTVHTYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCN 137

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
            GK+  AC L +++VD G R  +     ++  LC+    + A + FE       A  ++ 
Sbjct: 138 FGKLKLACSLYEEMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSSIPCAATWTI 197

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE 403
           +   L     +     +F      E++K +   +   +   + G  K  ++  A  V +E
Sbjct: 198 LIDGLFRAIRVDEACYYF------EEMKHTAIPNNWTYTVVINGLVKAGKVAEAERVLQE 251

Query: 404 LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
           +      ++  Y  ++G   + G++ KA +L   M+    + ++L+++  I  H    +I
Sbjct: 252 MP---VPTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEI 308

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV------RDCLGNVAS--- 514
             A E   ++     VP +  Y+ L  GLC+   +  A  L+       DC  NV S   
Sbjct: 309 DRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNT 368

Query: 515 --------------------------GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
                                      P    Y+  I  +C +G A +    L EM  + 
Sbjct: 369 LIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKK 428

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             P   + S++ISG+C+ G L+ A  VF ++
Sbjct: 429 ILPKVPVYSSVISGLCRAGELDAASTVFDSM 459



 Score = 40.0 bits (92), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +Q ++ E   +L++++       + AY  +++ L   RNL     +  EMK++    +  
Sbjct: 688 NQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLREMKRNEFVVNEA 747

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
            +  LI G C+ G+  R   +  EMK+  +    AI   L++ L    +  ++ DL+K
Sbjct: 748 TFNILIQGFCRLGQTDRAVRVLSEMKKV-LTPSAAIIKFLVDELARAEREQESKDLVK 804


>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 814

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 121/501 (24%), Positives = 206/501 (41%), Gaps = 61/501 (12%)

Query: 103 WGPQVVTELSKL-RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           W P+   ++  L R + P  V  VL+ +++  +A KFF+WA +Q  Y+H+   Y ++   
Sbjct: 160 WNPKHEGQMRNLLRSLKPSQVCAVLRSQDDERVALKFFYWADRQWRYRHDPMVYYSMLEV 219

Query: 162 LSRNNLFRAADQVPELMDSQ-------------------GRIAEMLEILEKMRRNLCKPD 202
           LS+  + + A +V  LM  +                   G++ + L++L  M+R   +P+
Sbjct: 220 LSKTKMCQGARRVLVLMKRRGIYRTPEAFLRVMVSYSRAGQLRDALKVLTLMQRAGVEPN 279

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           +      I V      L+  LR  E M+   +  +V+ Y  +I G C   RV    EL  
Sbjct: 280 LLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLD 339

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV-DSGYRADLGIYNSIIGGLCRV 321
           +M   G L D+  Y  ++  L  E ++ +  DL+K +  + G   D   YN++I  L + 
Sbjct: 340 DMPSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVRDQVTYNTLIHMLTKH 399

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
              D+A    +   +     D    + ++    + GRM                      
Sbjct: 400 DHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSE-------------------- 439

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYS--SVPIYNILMGALLEIGEVKKALYLFGKMR 439
                          A D+  E+  KG+    V  Y  ++     +GEV KA  L   M 
Sbjct: 440 ---------------AKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMH 484

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
               + N++S++  +     +G  LEA E  N   E    P+   Y+ L  GL K G++ 
Sbjct: 485 THGYKPNTVSYTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLS 544

Query: 500 AAMMLVRD-CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
            A  +VR+  L     GP E    L  L  CR G   +  + + E   +GC  N V  + 
Sbjct: 545 EACDVVREMVLKGFFPGPVEINLLLQSL--CRDGRTHEARKFMEECLNKGCAINVVNFTT 602

Query: 559 IISGMCKHGTLEEARKVFTNL 579
           +I G C++  L+ A  V  ++
Sbjct: 603 VIHGFCQNDELDAALSVLDDM 623



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 164/389 (42%), Gaps = 57/389 (14%)

Query: 138 FFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKM-RR 196
           +F    ++KG++ +   Y+A+ + L +                +GR++E  +++ +M  +
Sbjct: 407 WFLKDAEEKGFRIDKVGYSAIVHALCK----------------EGRMSEAKDLINEMLSK 450

Query: 197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
             C PDV  YTA++        +D   ++ + M     + + ++Y  L+ GLC+ G+ + 
Sbjct: 451 GHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLE 510

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
             E+    +E     +   Y VL+ GL  EGK+ +ACD+++++V  G+       N ++ 
Sbjct: 511 AREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEINLLLQ 570

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
            LCR  +  +A K  E  +    A +      ++    +   +D    +L  M       
Sbjct: 571 SLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDM------- 623

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFG 436
                    +L+ K        DVF             Y  L+ AL + G + +A  L  
Sbjct: 624 ---------YLINKHA------DVF------------TYTTLVDALGKKGRIAEATELMK 656

Query: 437 KMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           KM    ++   +++   I   C +E  D L A     K+I   +  ++  YN + + LC 
Sbjct: 657 KMLHKGIDPTPVTYRTVIHRYCQMEKVDDLVA--ILEKMILRQKCKTI--YNQVIEKLCG 712

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
           +G+++ A  L+   L   +    +  YAL
Sbjct: 713 LGKLEEADKLLGKVLRTASRSDAKTCYAL 741



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 147/372 (39%), Gaps = 44/372 (11%)

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D M Y +++  L K         +   MK  GI      +  ++      G++  A  +L
Sbjct: 209 DPMVYYSMLEVLSKTKMCQGARRVLVLMKRRGIYRTPEAFLRVMVSYSRAGQLRDALKVL 268

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             +  +G   +L I N+ I    R  + +KA +  E      + P+  T N ++    ++
Sbjct: 269 TLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDL 328

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEEL-KGKGYSSVP 413
            R++   +LL  M         D   ++  +  + KE+RI+   D+ +++ K  G     
Sbjct: 329 HRVEEAIELLDDMPSK--GCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVRDQ 386

Query: 414 I-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
           + YN L+  L +     +AL+           ++ + +S  +                  
Sbjct: 387 VTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVH----------------- 429

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
                              LCK G +  A  L+ + L      P    Y   +   CR G
Sbjct: 430 ------------------ALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLG 471

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           E +K  ++L  M   G  PN V  +A+++G+C+ G   EAR++  N+ E +  +  N+I 
Sbjct: 472 EVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLEAREMM-NMSEEQWWS-PNSIT 529

Query: 593 YDEILIEHMKKK 604
           Y  +L+  ++K+
Sbjct: 530 Y-SVLMHGLRKE 540


>gi|356525788|ref|XP_003531505.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Glycine max]
          Length = 572

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 114/465 (24%), Positives = 204/465 (43%), Gaps = 54/465 (11%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           KG K        L Y L + N  R A +V E+M   G I                PD  +
Sbjct: 93  KGQKPEVNQATQLLYDLCKFNKARKAVRVMEMMVGSGII----------------PDAAS 136

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           YT ++  L    N+   +++ E+M+      + + Y TL+ GLC  G + +  +L   + 
Sbjct: 137 YTHLVNFLCKRGNVGYAIQLVEKMEGHGFPTNTVTYNTLVKGLCMHGNLNQSLQLLDRLT 196

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           + G++ +   Y  L+E    E  V +A  LL D++  G   +L  YN ++ GLC+  + +
Sbjct: 197 KKGLIPNAFTYSFLLEAAYKERGVDEAMKLLDDIIAKGGEPNLVSYNVLLTGLCKEGRTE 256

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +A KLF+       +P   + N LL      GR +   +LLA+M+               
Sbjct: 257 EAIKLFQELPVKGFSPSVVSFNILLRSLCYEGRWEEANELLAEMD--------------- 301

Query: 386 FLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
               KE++                 SV  YNIL+ +L   G  ++A  +  +M     + 
Sbjct: 302 ----KEDQP---------------PSVVTYNILITSLSLNGRTEQAFKVLDEMTRSGFKA 342

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           ++ S++  I    + G +    +C +++I     P+   Y+ ++  L + G++  A  ++
Sbjct: 343 SATSYNPIIARLCKEGKVDLVLKCLDQMIHRRCHPNEGTYSAISM-LSEQGKVQEAFFII 401

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
           +  LG+  + P    Y   I  +CR G      ++L EMT+ G  P+    S++I GMC+
Sbjct: 402 QS-LGSKQNFPMHDFYKNLIASLCRKGNTYPAFQMLYEMTKYGFTPDSYTYSSLIRGMCR 460

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVL 610
            G L+EA K+F  L E     + +   Y+ +++   K +  DL +
Sbjct: 461 EGMLDEALKIFRILEENDHRPDIDN--YNALILGFCKAQRTDLSI 503



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 136/319 (42%), Gaps = 2/319 (0%)

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
           L+ LV  G + ++     ++  LC+  +  KA ++ E+ V   + PD ++   L+    +
Sbjct: 87  LEYLVGKGQKPEVNQATQLLYDLCKFNKARKAVRVMEMMVGSGIIPDAASYTHLVNFLCK 146

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPI 414
            G +    +L+ +ME   F             +     +  +L + + L  KG   +   
Sbjct: 147 RGNVGYAIQLVEKMEGHGFPTNTVTYNTLVKGLCMHGNLNQSLQLLDRLTKKGLIPNAFT 206

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y+ L+ A  +   V +A+ L   +     E N +S+++ +    + G   EA +   ++ 
Sbjct: 207 YSFLLEAAYKERGVDEAMKLLDDIIAKGGEPNLVSYNVLLTGLCKEGRTEEAIKLFQELP 266

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                PSV ++N L + LC  G  + A  L+ + +      P+   Y + I  +  +G  
Sbjct: 267 VKGFSPSVVSFNILLRSLCYEGRWEEANELLAE-MDKEDQPPSVVTYNILITSLSLNGRT 325

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           E+  +VL+EMT+ G   +    + II+ +CK G ++   K    +  R+      T    
Sbjct: 326 EQAFKVLDEMTRSGFKASATSYNPIIARLCKEGKVDLVLKCLDQMIHRRCHPNEGTYSAI 385

Query: 595 EILIEHMKKKTADLVLSGL 613
            +L E  K + A  ++  L
Sbjct: 386 SMLSEQGKVQEAFFIIQSL 404



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G      ++L +M +    PD + Y+++IR +  E  LD  L+++  ++++    D+  
Sbjct: 426 KGNTYPAFQMLYEMTKYGFTPDSYTYSSLIRGMCREGMLDEALKIFRILEENDHRPDIDN 485

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y  LI+G CK  R     E+F  M   G + +   Y +L+EGL  E +   A DL+K+L
Sbjct: 486 YNALILGFCKAQRTDLSIEIFLMMVNKGCVPNENTYTILVEGLAFEEETDIAADLMKEL 544



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 67/156 (42%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           ++  QG++ E   I++ +      P    Y  +I  L  + N     ++  EM K     
Sbjct: 387 MLSEQGKVQEAFFIIQSLGSKQNFPMHDFYKNLIASLCRKGNTYPAFQMLYEMTKYGFTP 446

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D   Y +LI G+C+ G +    ++FR ++EN    D   Y  LI G     +   + ++ 
Sbjct: 447 DSYTYSSLIRGMCREGMLDEALKIFRILEENDHRPDIDNYNALILGFCKAQRTDLSIEIF 506

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
             +V+ G   +   Y  ++ GL   ++ D A  L +
Sbjct: 507 LMMVNKGCVPNENTYTILVEGLAFEEETDIAADLMK 542


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 108/450 (24%), Positives = 196/450 (43%), Gaps = 55/450 (12%)

Query: 138 FFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRN 197
           +FH     +G++ +  SY  L   L R    +AA                +++L ++   
Sbjct: 149 YFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAA----------------VQLLRRVDGK 192

Query: 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
           L +P+V  Y+ +I  +  ++ ++    ++ EM    +  DV+ Y +LI G C  G++   
Sbjct: 193 LVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYA 252

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
            +LF  M  + I  +   + +LI+G   EGKV +A ++L  ++    + D+  YNS++ G
Sbjct: 253 VDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDG 312

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME-KLKFSV 376
            C VKQ +KA  LF V  Q  + PD  + + ++    ++  +D   KL  +M  K  F  
Sbjct: 313 YCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPN 372

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLF 435
                   + L  K  R   AL++ +E+  +G  S++  YN ++ A+ +   V KA+ L 
Sbjct: 373 VVTYNSLVDGLC-KSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLL 431

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            K++   ++                                   P +  Y  L  GLCK+
Sbjct: 432 TKIKEKGIQ-----------------------------------PDIFTYTVLINGLCKV 456

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G +D A  +  D L    S P  + Y   I   C  G  ++ + +L++M   GC PN + 
Sbjct: 457 GRLDDAQKVFEDLLVKGYS-PNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAIT 515

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLL 585
              +I  + +    ++A K+   +  R LL
Sbjct: 516 YEILIHSLFEKDENDKAEKLLREMIARGLL 545



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 201/445 (45%), Gaps = 18/445 (4%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L + ++M  N  KPD      ++   +   ++     V+ ++ K     D + +  LI G
Sbjct: 78  LSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKG 137

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC  G V +      ++   G  +D+  YG LI GL   G+   A  LL+ +     R +
Sbjct: 138 LCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPN 197

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           + +Y++II  +C+ K  + A+ L+   V   ++PD  T + L+     +G++     L  
Sbjct: 198 VVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFN 257

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
           +M  +  ++  ++  F   + G  KE ++  A +V   +  K     V  YN LM     
Sbjct: 258 RM--ISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCL 315

Query: 425 IGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
           + +V KA  LF  M  RG+  +V S S  I   C ++  D  EA +   ++      P+V
Sbjct: 316 VKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVD--EAMKLFEEMHCKQIFPNV 373

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             YN L  GLCK G    A+ LV D + +         Y   +  +C++   +K I +L 
Sbjct: 374 VTYNSLVDGLCKSGRTSCALELV-DEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLT 432

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
           ++ ++G  P+    + +I+G+CK G L++A+KVF +L  +      N   Y  ++     
Sbjct: 433 KIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGY--SPNIYTYTSLINGFCN 490

Query: 603 KKTADLVLSGLKFFGLESKLKAKGC 627
           K   D  L+ L      SK+K  GC
Sbjct: 491 KGFFDEGLAML------SKMKDNGC 509



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/461 (22%), Positives = 207/461 (44%), Gaps = 25/461 (5%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G K +F + N L  C S+                 G I     +  K+ +    PD   +
Sbjct: 88  GIKPDFITCNLLMNCFSQ----------------LGHIKFSFSVFAKILKKGYHPDAVTF 131

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           T +I+ L  +  +   L   +++     + D ++Y TLI GLC+ G      +L R +  
Sbjct: 132 TILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDG 191

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
             +  +  +Y  +I+ +  +  V  A DL  ++V      D+  Y+S+I G C V +   
Sbjct: 192 KLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKY 251

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A  LF   + D++ P+  T + L+    + G++     +LA M  +K +V  D+  +   
Sbjct: 252 AVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVM--MKKNVKLDVVTYNSL 309

Query: 387 LVGK--EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           + G    +++  A  +F  +  +G +  V  Y+I++    +I  V +A+ LF +M    +
Sbjct: 310 MDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQI 369

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             N ++++  +    +SG    A E  +++ +  Q  ++  YN +   +CK   +D A++
Sbjct: 370 FPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIV 429

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L+   +      P  F Y + I  +C+ G  +   +V  ++  +G  PN    +++I+G 
Sbjct: 430 LLTK-IKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGF 488

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           C  G  +E   + + +++   +   N I Y EILI  + +K
Sbjct: 489 CNKGFFDEGLAMLSKMKDNGCI--PNAITY-EILIHSLFEK 526


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 119/489 (24%), Positives = 206/489 (42%), Gaps = 45/489 (9%)

Query: 165 NNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCK----PDVFAYTAMIRVLAAERNLD 220
           N +  A  + P         A  +E+ ++M R  C     P +  Y  +I         D
Sbjct: 114 NGILAALARAPPSAACGDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPD 173

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280
             L +   + K+ +  D  +Y +LI G  K G V + H LF EM E G+L    I   +I
Sbjct: 174 LGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSII 232

Query: 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
           + L    ++ KA  +++ +VDSG   DL  Y+ II GLC+ K  DKA ++ E  V+    
Sbjct: 233 KELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTR 292

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400
           P+  T N L+   +  G  +   ++  QM         D    F   + K  R   A  +
Sbjct: 293 PNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCI 352

Query: 401 FEE--LKG------------KGYSSVP------------------------IYNILMGAL 422
           F+   LKG             GY++                          ++NIL+ A 
Sbjct: 353 FDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAY 412

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
              G + KA+ +F  M+   +  ++++F+  I      G + +A    N ++++   PS 
Sbjct: 413 ARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSE 472

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
           A Y CL +G C  GE+  A  L+ + +      P    ++  I ++C+ G   +  ++++
Sbjct: 473 AVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMD 532

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
            M Q G  PN V  ++++ G C  G +EEA  +   +    +  E N  +Y  ++  + K
Sbjct: 533 MMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGI--EPNCYIYGTLVDGYCK 590

Query: 603 KKTADLVLS 611
               D  L+
Sbjct: 591 NGRIDDALT 599



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 173/412 (41%), Gaps = 7/412 (1%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           +A++  I   M      P+   +  +I   A    +D  + ++E+M+   +  D + + T
Sbjct: 383 LADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 442

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I  LC+ GR+      F  M + G+    A+YG LI+G    G++ KA +L+ ++++  
Sbjct: 443 VISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKD 502

Query: 304 Y-RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
                +  ++SII  LC+  +  +   + ++ VQ    P+  T N L+     +G M+  
Sbjct: 503 IPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEA 562

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGA 421
           F LL  M  +       +         K  RI  AL VF ++  KG     + Y+I++  
Sbjct: 563 FALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHG 622

Query: 422 LLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
           L +      A  +F +M   G  + +++    +   C     D  EA     K+  M+  
Sbjct: 623 LFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTD--EANMLLEKLFAMNVK 680

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
             +  +N +   + K+G    A  L  D +      P    Y++ I ++ +    E+   
Sbjct: 681 FDIITFNIVISAMFKVGRRQEAKELF-DAISTYGLVPNIQTYSMMITNLIKEESYEEADN 739

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           +   + + G   +  + + I+  +     + +A    + + E  L  EA+TI
Sbjct: 740 LFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNLTLEASTI 791



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 142/315 (45%), Gaps = 28/315 (8%)

Query: 161 CLSRNNLFRAADQVPELMDS-------------------QGRIAEMLEILEKMRRNLCKP 201
           C +   L +A + + E+M+                    +GR+AE  +I++ M +   +P
Sbjct: 482 CCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRP 541

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +V  + +++       N++    + + M    +E +   Y TL+ G CK GR+     +F
Sbjct: 542 NVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVF 601

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           R+M   G+     +Y +++ GL    +   A  +  ++++SG    +  Y  ++GGLCR 
Sbjct: 602 RDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRN 661

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
              D+A  L E     ++  D  T N ++    ++GR     +L   +    + +  +++
Sbjct: 662 NCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAIS--TYGLVPNIQ 719

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKKA---LYLF 435
            +   +    KEE    A ++F  ++  G++S   + N ++  LL   EV KA   L + 
Sbjct: 720 TYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSII 779

Query: 436 GKMRGLNLEVNSLSF 450
           G+   L LE +++S 
Sbjct: 780 GE-NNLTLEASTISL 793


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 185/398 (46%), Gaps = 7/398 (1%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           M   G  A  L++L KM     KP V  YT +I  L  +  LD  L  + EM+   ++A+
Sbjct: 240 MCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKAN 299

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V  Y +LI   C  GR   G +L R+M    I  +   +  LI+ LV EGK+ +A DL  
Sbjct: 300 VFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYN 359

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           +++  G   +   YNS+I GLC  K+ D+A ++ ++ V     PD  T N L+    +  
Sbjct: 360 EMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAK 419

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPI 414
           ++D+  +L  +M  L+  + AD   +   + G  +  ++++A  VF+E+  +G +  +  
Sbjct: 420 QVDDGMRLFRKMS-LR-GMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMT 477

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y IL+  L + GE+++AL +  +M    +E++   ++I I     +  + +A      + 
Sbjct: 478 YAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLP 537

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                  + +YN +  GLCK   +  A  L R  +      P    Y   I    R  + 
Sbjct: 538 SKGVKRDIQSYNIMLSGLCKRSSLSEADALFRK-MKEDGYEPDGCTYNTLIRAHLRGNDI 596

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              ++++ EM + G   +      I+  M   G L+++
Sbjct: 597 TTSVQLIEEMKRCGFSSDASTVK-IVMDMLSSGELDKS 633



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 108/453 (23%), Positives = 188/453 (41%), Gaps = 53/453 (11%)

Query: 88  IARFITDAFRKNQFQWGP------------QVVTELSKL--RRVTPDLVAEVLKVEN--- 130
           IAR + +  + NQF +GP              +  L K+  R++ P +V   + ++N   
Sbjct: 218 IARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCK 277

Query: 131 --NPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAE 186
                 A  FF    + KG K N  +YN+L  ++C                  S GR  +
Sbjct: 278 DGRLDDALSFFSEM-ETKGIKANVFTYNSLIGSFC------------------SFGRWDD 318

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
             ++L  M      P+V  ++A+I  L  E  L     ++ EM    +E + + Y +LI 
Sbjct: 319 GAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIY 378

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC   R+   +++   M   G   D   Y +LI G     +V     L + +   G  A
Sbjct: 379 GLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIA 438

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D   Y+++I G C+ ++   A K+F+  V   + P   T   LL    + G ++    +L
Sbjct: 439 DTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGIL 498

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
            QM K K  +   +       +    ++  A  +F  L  KG    +  YNI++  L + 
Sbjct: 499 DQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKR 558

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ--VPSVA 483
             + +A  LF KM+    E +  +++  I+ H+   DI  + +    I EM +    S A
Sbjct: 559 SSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQL---IEEMKRCGFSSDA 615

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
           +   +   +   GE+D + +       N+ SGP
Sbjct: 616 STVKIVMDMLSSGELDKSFL-------NMLSGP 641



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 151/376 (40%), Gaps = 37/376 (9%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           D++    MI      R L        ++ K   E + + + TL+ GLC  GRV    EL 
Sbjct: 124 DLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELV 183

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             M  +  + D      ++ GL  + +V +A DL+  ++ +G + +   Y  I+  +C+ 
Sbjct: 184 DCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKS 243

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
                A  L        + P   T   ++    + GR+D+                    
Sbjct: 244 GNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDD-------------------- 283

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
                          AL  F E++ KG  ++V  YN L+G+    G       L   M  
Sbjct: 284 ---------------ALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMIT 328

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             +  N ++FS  I   V+ G + EA + +N++I     P+   YN L  GLC    +D 
Sbjct: 329 RKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDE 388

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A  ++ D + +    P  + Y + I   C++ + +  + +  +M+  G   + V  S +I
Sbjct: 389 ANQMM-DLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLI 447

Query: 561 SGMCKHGTLEEARKVF 576
            G C+   L  A+KVF
Sbjct: 448 QGFCQSRKLIVAKKVF 463



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 121/290 (41%), Gaps = 8/290 (2%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           +N + G L R KQ+D    L +      +A D  T+N ++ C     ++   F  + ++ 
Sbjct: 93  FNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIF 152

Query: 371 KLKFSVAADLEKFFEFLVG--KEERIMMALDVFE-ELKGKGYSSVPIYNILMGALLEIGE 427
           KL +    +   F   L G   E R+  A+++ +  +  +    +   N ++  L     
Sbjct: 153 KLGYE--PNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDR 210

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           V +A+ L  +M     + N  ++   +    +SG+   A +   K+      P V  Y  
Sbjct: 211 VSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTI 270

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           +   LCK G +D A+    + +         F Y   I   C  G  +   ++L +M   
Sbjct: 271 IIDNLCKDGRLDDALSFFSE-METKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITR 329

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
              PN V  SA+I  + K G L EA+ ++  +  R +  E NTI Y+ ++
Sbjct: 330 KITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGI--EPNTITYNSLI 377



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 10/233 (4%)

Query: 397 ALDVFEE-LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A+ +F+  L+ +   +V  +N L G L    +    L L  +M    +  +  + +I I 
Sbjct: 74  AVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMIN 133

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
           C      +  A     KI ++   P+   +N L  GLC  G +  A+ LV DC+      
Sbjct: 134 CFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELV-DCMVLSQHV 192

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P        +  +C      + ++++  M   GC PN+     I++ MCK G    A  +
Sbjct: 193 PDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDL 252

Query: 576 FTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
              +  RK+  + + + Y  I+    K    D  LS   FF   S+++ KG K
Sbjct: 253 LRKMEHRKI--KPHVVTYTIIIDNLCKDGRLDDALS---FF---SEMETKGIK 297


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 194/443 (43%), Gaps = 41/443 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG + + L +L  +    C+PDV +Y A+++ L   +       + EEM +     +++ 
Sbjct: 205 QGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVT 264

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + TLI  LC+ G   R HE+  +M E+G   D  +Y  +I+G+  EG +  A ++L  + 
Sbjct: 265 FNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMP 324

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + ++  YN+++ GLC  +++++  +L       D   D  T N L+    + G +D
Sbjct: 325 SYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVD 384

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG------------------------------- 389
              +LL QM  L      D+  +   + G                               
Sbjct: 385 RVIELLEQM--LVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTI 442

Query: 390 ------KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLN 442
                   ER + A D+  ++  +G    PI +N L+  L + G V++A+ L  +M    
Sbjct: 443 VLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNG 502

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
              + +S+S  I    ++G   EA E  N ++     P+   Y+ +   L + G I+  +
Sbjct: 503 CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVI 562

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            +  D + +         Y   I  +C+ GE E+ IE L  M   GC PNE   + +I G
Sbjct: 563 QMF-DNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRG 621

Query: 563 MCKHGTLEEARKVFTNLRERKLL 585
           +   G ++EA+++ T L  +  L
Sbjct: 622 LASEGFVKEAQEMLTELCSKGAL 644



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 173/382 (45%), Gaps = 6/382 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+ + Y  ++R L A   +   L V +EM +         Y  ++   C+GG       +
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 179

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             ++   G  +D     +++  +  +G V KA  LL+DL   G   D+  YN+++ GLC 
Sbjct: 180 LEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCM 239

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            K++    +L E  V+    P+  T N L+      G  +   ++LAQM   +     D+
Sbjct: 240 AKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMA--EHGCTPDI 297

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             +   + G  KE  + +A ++   +   G   +V  YN L+  L      ++   L  +
Sbjct: 298 RMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAE 357

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M   +  ++ ++F+I +    ++G +    E   +++    +P V  Y  +  G CK G 
Sbjct: 358 MFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGL 417

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           ID A+ML++  +      P    Y + +  +C +       +++++M Q+GCP N +  +
Sbjct: 418 IDEAVMLLKS-MTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFN 476

Query: 558 AIISGMCKHGTLEEARKVFTNL 579
            +I+ +CK G +E+A ++   +
Sbjct: 477 TLINFLCKKGLVEQAIELLKQM 498



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 97/445 (21%), Positives = 205/445 (46%), Gaps = 22/445 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G     + +LE +    C  DV     ++  +  + ++D  L +  ++     E DV++Y
Sbjct: 171 GGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSY 230

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++ GLC   R     EL  EM       +   +  LI  L   G   +  ++L  + +
Sbjct: 231 NAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAE 290

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRM 359
            G   D+ +Y +II G+C+      A+++        L P+    N LL  +C AE  R 
Sbjct: 291 HGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAE--RW 348

Query: 360 DNFFKLLAQM-------EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSS 411
           +   +LLA+M       + + F++  D    F    G  +R+   +++ E++   G    
Sbjct: 349 EETEELLAEMFDKDCPLDDVTFNILVD----FFCQNGLVDRV---IELLEQMLVHGCMPD 401

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           V  Y  ++    + G + +A+ L   M     + N++S++I ++    +   ++A +  +
Sbjct: 402 VITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMS 461

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           ++I+     +   +N L   LCK G ++ A+ L++  L N  S P    Y+  I  + ++
Sbjct: 462 QMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCS-PDLISYSTVIDGLGKA 520

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           G+ ++ +E+LN M  +G  PN +I S+I S + + G + +  ++F N+++  + ++A  +
Sbjct: 521 GKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDA--V 578

Query: 592 VYDEILIEHMKKKTADLVLSGLKFF 616
           +Y+ ++    K+   +  +  L + 
Sbjct: 579 LYNAVISSLCKRGETERAIEFLAYM 603



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 125/290 (43%), Gaps = 1/290 (0%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S  R  E  E+L +M    C  D   +  ++        +D  + + E+M       DV+
Sbjct: 344 SAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVI 403

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I G CK G +     L + M   G   +   Y ++++GL    +   A DL+  +
Sbjct: 404 TYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQM 463

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G   +   +N++I  LC+    ++A +L +  + +  +PD  + + ++    + G+ 
Sbjct: 464 IQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKT 523

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNIL 418
           D   +LL  M     S    +       + +E RI   + +F+ ++     S   +YN +
Sbjct: 524 DEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAV 583

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           + +L + GE ++A+     M       N  +++I I+     G + EA E
Sbjct: 584 ISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQE 633



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 122/291 (41%), Gaps = 48/291 (16%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           YN+++ G CR  Q + A +L        + P+  T  P++      GR+ +   +L +M 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 371 KLKFSVAADLEKFFEFLVGKEER---IMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
           +      A +   +  ++    R      A+ V E+L  +G +  V   N+++ A+ + G
Sbjct: 150 RRG---CAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQG 206

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            V KAL+L   +     E                                   P V +YN
Sbjct: 207 SVDKALHLLRDLPSFGCE-----------------------------------PDVVSYN 231

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            + KGLC          L+ + +  +A  P    +   I ++CR+G  E++ EVL +M +
Sbjct: 232 AVLKGLCMAKRWGCVQELMEE-MVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAE 290

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            GC P+  + + II G+CK G L+ A ++   +    L  + N + Y+ +L
Sbjct: 291 HGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGL--KPNVVCYNTLL 339


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 121/454 (26%), Positives = 196/454 (43%), Gaps = 23/454 (5%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIR---VLAAERNLDACLRVWEEMKKDLVEAD 237
            G + E    LE M      PDV A TA+IR    +   +N    + + EE    +   D
Sbjct: 92  NGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVI---D 148

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V +Y  LI G CK G +    E  R +   G+  + A Y  ++  L   GK+ +A  +L 
Sbjct: 149 VTSYNVLISGYCKSGEI---EEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLG 205

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
             + S    D+     +I   C+     +A KLF         PD  T N L+    + G
Sbjct: 206 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGG 265

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKG-YSSVPI 414
           R+D   + L ++    +    D+      L  +    R M A+ +   +  KG   SV  
Sbjct: 266 RLDEAIRFLKKLP--SYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVT 323

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           +NIL+  L + G + KAL +   M       NS SF+  IQ       I  A E    ++
Sbjct: 324 FNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMV 383

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                P +  YN L   LCK G++D A++++   L +    P+   Y   I  + + G+A
Sbjct: 384 SRGCYPDIVTYNILLTALCKDGKVDDAVVILSQ-LSSKGCSPSLISYNTVIDGLLKVGKA 442

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           E  +E+L EM  +G  P+ + C++++ G+ + G + EA K F  L  ++     N  +Y+
Sbjct: 443 ELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYL--KRFAIRPNAFIYN 500

Query: 595 EILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
            I+    K +   L +  L      + + AKGCK
Sbjct: 501 SIITGLCKSQQTSLAIDFL------ADMVAKGCK 528



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 175/411 (42%), Gaps = 9/411 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G I E L +L++M  +   P+   Y A++  L     L   ++V     +     DV+ 
Sbjct: 162 SGEIEEALRVLDRMGVS---PNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVT 218

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
              LI   CK   V +  +LF EM+  G   D   Y VLI+G    G++ +A   LK L 
Sbjct: 219 CTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLP 278

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + D+  +N I+  LC   ++  A KL    ++    P   T N L+    + G + 
Sbjct: 279 SYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLG 338

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
               +L  M K   +   +   F   + G    + I  A++  E +  +G Y  +  YNI
Sbjct: 339 KALNVLEMMPKHGHT--PNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNI 396

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ AL + G+V  A+ +  ++       + +S++  I   ++ G    A E   ++    
Sbjct: 397 LLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKG 456

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P +     +  GL + G++  AM      L   A  P  F Y   I  +C+S +    
Sbjct: 457 LKPDLITCTSVVGGLSREGKVREAMKFFHY-LKRFAIRPNAFIYNSIITGLCKSQQTSLA 515

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           I+ L +M  +GC P E   + +I G+   G  E+A K+   L  R L+  +
Sbjct: 516 IDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRGLVKRS 566



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 109/257 (42%), Gaps = 11/257 (4%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           SY      +S N + R+       + S GR  + +++L  M R  C P V  +  +I  L
Sbjct: 279 SYGCQPDVISHNMILRS-------LCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFL 331

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
             +  L   L V E M K     +  ++  LI G C G  + R  E    M   G   D 
Sbjct: 332 CQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDI 391

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             Y +L+  L  +GKV  A  +L  L   G    L  YN++I GL +V + + A +L E 
Sbjct: 392 VTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEE 451

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KE 391
                L PD  T   ++   +  G++    K    ++  +F++  +   +   + G  K 
Sbjct: 452 MCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLK--RFAIRPNAFIYNSIITGLCKS 509

Query: 392 ERIMMALDVFEELKGKG 408
           ++  +A+D   ++  KG
Sbjct: 510 QQTSLAIDFLADMVAKG 526


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 104/448 (23%), Positives = 192/448 (42%), Gaps = 45/448 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E  ++ ++M    C+P    YT +I+        D  +++ +EM       +V  Y
Sbjct: 279 GRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTY 338

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI  LC+ G++   + +FR+M ++G+      +  LI G   EG V  A  LL  +  
Sbjct: 339 TILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEK 398

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              + ++  YN ++ GLCRV +  KA+ L    V + L PD  T N L+         D 
Sbjct: 399 GNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILV---------DG 449

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
           F                           KE ++ MA ++F  +   G       +  L+ 
Sbjct: 450 FC--------------------------KEGQLNMAFNIFNSMNSAGLEPDGFTFTALID 483

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L ++G +++A  + G M    + ++ ++F+  I  H + G   + C     ++E   + 
Sbjct: 484 GLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLT 543

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +   +NC    L K  +++ A  ++   +      P+   + + I   CR+GE    +++
Sbjct: 544 TAHTFNCFLDALGKDYKLNEANAMLGKMM-KYGLVPSVVTHTILIEGHCRAGETALSLKM 602

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           L  M Q GC PN    + II+G+C +G +EEA  +  ++    +    N   Y  ++  H
Sbjct: 603 LERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGV--SPNHFTYAVLVKAH 660

Query: 601 MKKKTADLVLSGLKFFGLESKLKAKGCK 628
           +K    D      + F + S +   GC+
Sbjct: 661 VKAGRLD------RAFQIVSTMVKNGCQ 682



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 188/411 (45%), Gaps = 37/411 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+I E   +  KM ++   P +  + A+I     E  + +  ++   M+K   + ++  
Sbjct: 348 EGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRT 407

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ GLC+  +  +   L R + +NG+L DR  Y +L++G   EG++  A ++   + 
Sbjct: 408 YNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMN 467

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +G   D   + ++I GLC++ + ++A  +    V+  ++ D  T   L+    ++G+  
Sbjct: 468 SAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGK-- 525

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
                           A D+   FE +V  E R +              ++   +N  + 
Sbjct: 526 ----------------AKDVCFLFENMV--ENRCL--------------TTAHTFNCFLD 553

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           AL +  ++ +A  + GKM    L  + ++ +I I+ H  +G+   + +   ++ +    P
Sbjct: 554 ALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSP 613

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +V  Y  +  GLC  G ++ A  ++   + +    P  F YA+ +    ++G  ++  ++
Sbjct: 614 NVYTYTIIINGLCNNGRVEEAETILFS-MSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQI 672

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT--NLRERKLLTEAN 589
           ++ M + GC PN  I SA++SG     T   AR + +  +L  R L +E N
Sbjct: 673 VSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEEN 723



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 110/512 (21%), Positives = 215/512 (41%), Gaps = 10/512 (1%)

Query: 116 RVTPDLVAEVLKVE-NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQ- 173
            +TP L  +++ ++ NN  L  +FF W  +Q  Y ++      L   L   +LF  A + 
Sbjct: 66  HMTPHLAGKIIGLQSNNVELGVRFFKWVCRQSSYCYDLDGRIQLLGVLVSRDLFGVAQKA 125

Query: 174 ----VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
               + E  DS+  + +++  L+ M     +     Y+ ++  LA          V+  M
Sbjct: 126 VVLLIQECEDSENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRM 185

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
             +      + Y T++  LCK G V        ++   G  +D  +   L+        +
Sbjct: 186 VNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDL 245

Query: 290 GKACDLLKDLV-DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           G+A  + + +  +   R +   Y+ +I GLC   + ++A++L +  V+    P   T   
Sbjct: 246 GEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTV 305

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
           L+    ++G  D   K+L +M                  + +E +I  A  VF ++   G
Sbjct: 306 LIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHG 365

Query: 409 YS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
               +  +N L+    + G V  A  L   M   N + N  +++  ++         +A 
Sbjct: 366 LCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAF 425

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
               ++++   +P    YN L  G CK G+++ A  +  + + +    P  F +   I  
Sbjct: 426 LLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIF-NSMNSAGLEPDGFTFTALIDG 484

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           +C+ G  E+   +L  M ++G   +EV  +A+I G CK G  ++   +F N+ E + LT 
Sbjct: 485 LCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTT 544

Query: 588 ANTI-VYDEILIEHMKKKTADLVLSGLKFFGL 618
           A+T   + + L +  K   A+ +L  +  +GL
Sbjct: 545 AHTFNCFLDALGKDYKLNEANAMLGKMMKYGL 576



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/326 (21%), Positives = 127/326 (38%), Gaps = 15/326 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  ++  + E M  N C      +   +  L  +  L+    +  +M K  +   V+ +
Sbjct: 524 GKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTH 583

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G C+ G      ++   MK+ G   +   Y ++I GL   G+V +A  +L  +  
Sbjct: 584 TILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSS 643

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   +   Y  ++    +  + D+A+++    V++   P+    + LL           
Sbjct: 644 FGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALL---------SG 694

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
           F      +     S   DL+      +  EE     L    E+K  G  +  +YN L+  
Sbjct: 695 FVLSNTAIGARALSSTGDLDARS---LSSEENDNNCLS--NEIKKCGVPTEDLYNFLVVG 749

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L + G + +A  L   M    L  +    SI I+ + ++       E    +++   VPS
Sbjct: 750 LCKEGRIIEADQLTQDMVKHGLFPDKAISSI-IEHYCKTCKYDNCLEFMKLVLDNKFVPS 808

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRD 507
            A+Y  +  GL   G +  A  LV D
Sbjct: 809 FASYCWVIHGLRNEGRVQEAQKLVSD 834



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 95/234 (40%), Gaps = 22/234 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           + GR+ E   IL  M      P+ F Y  +++       LD   ++   M K+  + +  
Sbjct: 627 NNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSH 686

Query: 240 AYVTLIMGL-----CKGGRVVR------GHELFREMKENGILIDRA---------IYGVL 279
            Y  L+ G        G R +          L  E  +N  L +           +Y  L
Sbjct: 687 IYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFL 746

Query: 280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339
           + GL  EG++ +A  L +D+V  G   D  I +SII   C+  ++D   +  ++ + +  
Sbjct: 747 VVGLCKEGRIIEADQLTQDMVKHGLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLDNKF 805

Query: 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-LKFSVAADLEKFFEFLVGKEE 392
            P F++   ++      GR+    KL++ + +        ++    EFL+ +EE
Sbjct: 806 VPSFASYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEEVEVTPSIEFLMKEEE 859


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 187/412 (45%), Gaps = 37/412 (8%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G + +  ++L  ++     P+V  YT +I       +++     +++M +  + A+   
Sbjct: 175 NGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYT 234

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  LI GL K G    G +LF +MK NG+  +   Y  L+    GEGK+ +A DL  ++ 
Sbjct: 235 FTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMR 294

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G  A++  YN++IGG+CR ++  +A KL +   +  ++P+  T N L+    ++G +D
Sbjct: 295 ERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLD 354

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
                                               A  + ++LK  G S S+  YNIL+
Sbjct: 355 K-----------------------------------ASSLLDQLKSNGLSPSLVTYNILI 379

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               + G  K    L  +M G  +  + ++ ++ I  +V   ++ +A + ++ + +   V
Sbjct: 380 EGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLV 439

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P V  Y  L  GLC  G +  +  L R  +G +   P++  Y   I   C+   + + + 
Sbjct: 440 PDVYVYGVLIHGLCMKGNMKESSKLFRS-MGEMHVEPSDVIYNTMIHGYCKEDNSYRALR 498

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           +L EM  +G  PN    S+II  +CK G  EEA  +   + E +L   A+ +
Sbjct: 499 LLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSASIL 550



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 108/496 (21%), Positives = 222/496 (44%), Gaps = 21/496 (4%)

Query: 121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYN-ALAYCLSRNNLFRAADQVPELMD 179
           L+ +++K+   P L +     +  Q+G++H   S +  L + L  + L  A   + +++ 
Sbjct: 9   LIQKMVKI---PPLQALSLFNSSIQQGFQHTHHSISFLLQHLLDHHKLPHAQSLILQILS 65

Query: 180 SQ-----GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
           ++       +  +L  L +  +N        Y ++I      + LD  L  + EM    +
Sbjct: 66  NKISSPFFTVPSLLHHLTQ-NQNPSMTTALLYESIINAHLKSQLLDKALIFFNEMVDKGL 124

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
                 + +L+  L +     +    F E+KE  +  D   +G++I+G    G + K+  
Sbjct: 125 VFRPNIFNSLLGSLVRSNCFEKAWLFFNELKER-VKFDVYSFGIMIKGCCENGNLDKSFQ 183

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           LL  L D G   ++ IY ++I G C+    ++A   F+   +  L  +  T   L+    
Sbjct: 184 LLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLF 243

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK---EERIMMALDVFEELKGKGY-S 410
           + G   + F L    EK+K +        +  L+ +   E +I  A D+F+E++ +G  +
Sbjct: 244 KKGLKKDGFDLF---EKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEA 300

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           +V  YN L+G +     V +A  L  +M+   +  N ++++  I    + G++ +A    
Sbjct: 301 NVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLL 360

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
           +++      PS+  YN L +G  K G       L R+  G   S P++    + I    R
Sbjct: 361 DQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGIS-PSKVTCTVLIDAYVR 419

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             E EK  ++ + M + G  P+  +   +I G+C  G ++E+ K+F ++ E  +  E + 
Sbjct: 420 LQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHV--EPSD 477

Query: 591 IVYDEILIEHMKKKTA 606
           ++Y+ ++  + K+  +
Sbjct: 478 VIYNTMIHGYCKEDNS 493



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 137/308 (44%), Gaps = 7/308 (2%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            ++ EKM+ N   P+++ Y  ++     E  +     +++EM++  VEA+V+ Y TLI G
Sbjct: 252 FDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGG 311

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           +C+  RV    +L  +MK+  +  +   Y  LI G    G + KA  LL  L  +G    
Sbjct: 312 MCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPS 371

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           L  YN +I G  +   +     L        ++P   T   L+     +  M+  F++ +
Sbjct: 372 LVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYS 431

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY--SSVPIYNILMGALL 423
            MEK  F +  D+  +   + G   +  +  +  +F  + G+ +   S  IYN ++    
Sbjct: 432 SMEK--FGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSM-GEMHVEPSDVIYNTMIHGYC 488

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           +     +AL L  +M    L  N  S+S  I    + G   EA    +K+IE+   PS +
Sbjct: 489 KEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSAS 548

Query: 484 AYNCLTKG 491
             N ++K 
Sbjct: 549 ILNMISKA 556



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 16/227 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           +++G + N  +YN L   + R                + R+ E  +++++M++    P++
Sbjct: 294 RERGVEANVVTYNTLIGGMCR----------------EERVWEAEKLVDQMKKAAVSPNL 337

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  +I       NLD    + +++K + +   ++ Y  LI G  K G      +L RE
Sbjct: 338 ITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLARE 397

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M+  GI   +    VLI+  V   ++ KA  +   +   G   D+ +Y  +I GLC    
Sbjct: 398 MEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGN 457

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
             ++ KLF    +  + P     N ++    +        +LL +ME
Sbjct: 458 MKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREME 504


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 182/378 (48%), Gaps = 6/378 (1%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           V  +M   G+ A  +E+L KM     K D   Y+ +I  L    +LD    ++ EM+   
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 293

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  +++ Y  LI G C  GR   G +L R+M +  I  +   + VLI+  V EGK+ +A 
Sbjct: 294 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 353

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           +L K+++  G   D   Y S+I G C+    DKA ++ ++ V     P+  T N L+   
Sbjct: 354 ELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGY 413

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGY-S 410
            +  R+D+  +L  +M  L+  V AD   +   + G  E  ++ +A ++F+E+  +    
Sbjct: 414 CKANRIDDGLELFRKMS-LR-GVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPP 471

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           ++  Y IL+  L + GE +KAL +F K+    +E++   ++I I     +  + +A +  
Sbjct: 472 NIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 531

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
             +      P V  YN +  GLCK G +  A +L R  +      P  + Y + I     
Sbjct: 532 CSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRK-MEEDGHAPDGWTYNILIRAHLG 590

Query: 531 SGEAEKIIEVLNEMTQEG 548
            G+A K ++++ E+ + G
Sbjct: 591 DGDATKSVKLIEELKRCG 608



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 101/461 (21%), Positives = 201/461 (43%), Gaps = 31/461 (6%)

Query: 146 KGYKHNFASYNALAYCLSRNN----LFRAADQVPEL---------------MDSQGRIAE 186
           KG  HN  + + +  C  R       F A  ++ +L               +  +GR++E
Sbjct: 117 KGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSE 176

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
            LE++++M     KPD+     ++  L         + + ++M +   + + + Y  ++ 
Sbjct: 177 ALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLN 236

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
            +CK G+     EL R+M+E  I +D   Y ++I+GL   G +  A +L  ++   G   
Sbjct: 237 VMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITT 296

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           ++  YN +IGG C   ++D   KL    ++  + P+  T + L+    + G++    +L 
Sbjct: 297 NIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELH 356

Query: 367 AQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
            +M  +   +A D   +   + G  KE  +  A  + + +  KG   ++  +NIL+    
Sbjct: 357 KEM--IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYC 414

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           +   +   L LF KM    +  ++++++  IQ   E G +  A E   +++     P++ 
Sbjct: 415 KANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIV 474

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK---YALTILHVCRSGEAEKIIEV 540
            Y  L  GLC  GE + A+ +       +     E     Y + I  +C + + +   ++
Sbjct: 475 TYKILLDGLCDNGESEKALEIFE----KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDL 530

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              +  +G  P     + +I G+CK G L EA  +F  + E
Sbjct: 531 FCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEE 571



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 183/400 (45%), Gaps = 8/400 (2%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P V  ++ +   +A  +  D  L + ++M+   +  ++     +I   C+  ++      
Sbjct: 86  PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             ++ + G   +   +  LI GL  EG+V +A +L+  +V+ G++ DL   N+++ GLC 
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             +  +A  L +  V+    P+  T  P+L    + G+     +LL +ME+   ++  D 
Sbjct: 206 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEER--NIKLDA 263

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYSS-VPIYNILMGALLEIGEVKKALYLFGK 437
            K+   + G  K   +  A ++F E++ KG ++ +  YNIL+G     G       L   
Sbjct: 264 VKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRD 323

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M    +  N ++FS+ I   V+ G + EA E H ++I     P    Y  L  G CK   
Sbjct: 324 MIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENH 383

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           +D A  +V D + +    P    + + I   C++   +  +E+  +M+  G   + V  +
Sbjct: 384 LDKANQMV-DLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYN 442

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            +I G C+ G L  A+++F  +  RK+    N + Y  +L
Sbjct: 443 TLIQGFCELGKLNVAKELFQEMVSRKV--PPNIVTYKILL 480



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 136/305 (44%), Gaps = 26/305 (8%)

Query: 99  NQFQW--GPQVVTELSKLRRVTPDLVAEVLKVEN----NPTLASKFFHWAGKQKGYKHNF 152
           N  +W  G +++ ++ K R++ P++V   + +++         ++  H     +G   + 
Sbjct: 310 NAGRWDDGAKLLRDMIK-RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDT 368

Query: 153 ASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEMLEILEK 193
            +Y +L     + N    A+Q+ +LM S+G                   RI + LE+  K
Sbjct: 369 ITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRK 428

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M       D   Y  +I+       L+    +++EM    V  +++ Y  L+ GLC  G 
Sbjct: 429 MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE 488

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
             +  E+F +++++ + +D  IY ++I G+    KV  A DL   L   G +  +  YN 
Sbjct: 489 SEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNI 548

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           +IGGLC+     +A  LF    +D  APD  T N L+      G      KL+ ++++  
Sbjct: 549 MIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCG 608

Query: 374 FSVAA 378
           FSV A
Sbjct: 609 FSVDA 613



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 134/338 (39%), Gaps = 48/338 (14%)

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           L  GLV + K   A DL +D++ S     +  ++ +   + + KQ+D    L +      
Sbjct: 60  LRSGLV-DIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKG 118

Query: 339 LAPDFSTVNPLLVC-------CAEMGRMDNFFKLLAQMEKLKFSVAAD------------ 379
           +A +  T++ ++ C       C     M    KL  +   + FS   +            
Sbjct: 119 IAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEAL 178

Query: 380 --LEKFFEF-----------------LVGKEERIMMALDVFEELKGKGYSSVP---IYNI 417
             +++  E                  L GKE   M+ +D   E     Y   P    Y  
Sbjct: 179 ELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVE-----YGCQPNAVTYGP 233

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++  + + G+   A+ L  KM   N++++++ +SI I    + G +  A    N++    
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 293

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
              ++  YN L  G C  G  D    L+RD +    + P    +++ I    + G+  + 
Sbjct: 294 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKIN-PNVVTFSVLIDSFVKEGKLREA 352

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
            E+  EM   G  P+ +  +++I G CK   L++A ++
Sbjct: 353 EELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQM 390



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 64/135 (47%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G   + LEI EK+ ++  + D+  Y  +I  +     +D    ++  +    V+  V  
Sbjct: 486 NGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKT 545

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I GLCK G +     LFR+M+E+G   D   Y +LI   +G+G   K+  L+++L 
Sbjct: 546 YNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELK 605

Query: 301 DSGYRADLGIYNSII 315
             G+  D      +I
Sbjct: 606 RCGFSVDASTIKMVI 620


>gi|356497651|ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 827

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 186/411 (45%), Gaps = 2/411 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + E L++LE+M+ +   PDV++Y+ +I     + ++  CL + EEM+   ++  +++
Sbjct: 404 RGEVFEALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIKPSIVS 463

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI GLCK   +    ++F  +  +    D  +Y  LI+G   +G +  A  LL++++
Sbjct: 464 YTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEEMI 523

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +          S+I G  ++  FD+A ++F   ++D + PD    N +L      G   
Sbjct: 524 CNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTIACNYILDGSCRAGYFK 583

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE-LKGKGYSSVPIYNILM 419
               LL   ++  F++         + + KE     AL++    LK     SV  Y+ L+
Sbjct: 584 EALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERALELLPRMLKRNVLPSVVNYSTLI 643

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               +    K+A+ LF +M  + +  N  +++I +     S  + EA     ++ E    
Sbjct: 644 SGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERGLC 703

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
               +Y  L  G C   E+  A  L  + +      P    Y   I   C+S   +    
Sbjct: 704 LDQISYTTLIVGFCNNREMKKAWALFEE-MSREGCSPNVITYTCIIDGFCKSNRIDLATW 762

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           V ++M ++   P+ V  + +I    KHG  ++A K++  ++++ +L +  T
Sbjct: 763 VFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAHKLYDVMKDKGVLPDDIT 813



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/441 (23%), Positives = 177/441 (40%), Gaps = 45/441 (10%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           IL K+ R+  KP V  Y+  I  L    N++A L +   +       +  ++  +I G C
Sbjct: 343 ILGKIYRSGEKPTVVTYSTYIHGLCKVGNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFC 402

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K G V    ++  EMK +GIL D   Y +LI    G+G V K  DL++++  S  +  + 
Sbjct: 403 KRGEVFEALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIKPSIV 462

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            Y S+I GLC+      A  +F          D +    L+      G MD+  KLL +M
Sbjct: 463 SYTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEEM 522

Query: 370 -----EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
                    FS  + +  +++  +  +     AL+VF  +   G +      N ++    
Sbjct: 523 ICNELVPTAFSCRSLIRGYYKLGLFDQ-----ALEVFNAMLRDGIWPDTIACNYILDGSC 577

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
             G  K+AL L    +     +N  S++  I    + G    A E   ++++ + +PSV 
Sbjct: 578 RAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERALELLPRMLKRNVLPSVV 637

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLG-----NVASGPT--------------------- 517
            Y+ L  G  K      A+ L    +      N+A+                        
Sbjct: 638 NYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKEM 697

Query: 518 --------EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
                   +  Y   I+  C + E +K   +  EM++EGC PN +  + II G CK   +
Sbjct: 698 KERGLCLDQISYTTLIVGFCNNREMKKAWALFEEMSREGCSPNVITYTCIIDGFCKSNRI 757

Query: 570 EEARKVFTNLRERKLLTEANT 590
           + A  VF  +    ++ +  T
Sbjct: 758 DLATWVFDKMNRDSVIPDVVT 778



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 99/227 (43%), Gaps = 16/227 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G+  N  SYNA+ Y L +                +G     LE+L +M +    P V
Sbjct: 593 QEHGFNLNPHSYNAIIYKLCK----------------EGYPERALELLPRMLKRNVLPSV 636

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y+ +I   A + N    + ++  M K  +  ++  Y  L+       ++   + +F+E
Sbjct: 637 VNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKE 696

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           MKE G+ +D+  Y  LI G     ++ KA  L +++   G   ++  Y  II G C+  +
Sbjct: 697 MKERGLCLDQISYTTLIVGFCNNREMKKAWALFEEMSREGCSPNVITYTCIIDGFCKSNR 756

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
            D A  +F+   +D + PD  T   L+    + G  D   KL   M+
Sbjct: 757 IDLATWVFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAHKLYDVMK 803



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/316 (19%), Positives = 128/316 (40%), Gaps = 9/316 (2%)

Query: 280 IEGLVGEGKVGKACDLLKDLVDSGYRADLG--IYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           I G   E K     +L    +DS    +    +++ +I         + A  +F      
Sbjct: 218 IVGFCNEAKY-DTFELFSAFLDSPQHVERSGVVFDVLISVFASNSMLENALDVFSNAKHV 276

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL----KFSVAADLEKFFEFLVGKEER 393
            L PD  T N LL C  E  R++   ++  +++             +  F+   VG +  
Sbjct: 277 GLEPDIRTCNFLLKCLVEANRVEFVRRVFEELKDRGPSPNIYTYTIMMNFYCSDVGCDAG 336

Query: 394 IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           +  A  +  ++   G   +V  Y+  +  L ++G V+ AL L   +   N  +NS SF+ 
Sbjct: 337 MRQAAVILGKIYRSGEKPTVVTYSTYIHGLCKVGNVEAALMLIRNLHYTNQPLNSHSFND 396

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
            I    + G++ EA +   ++     +P V +Y+ L    C  G++   + L+ + + + 
Sbjct: 397 VIYGFCKRGEVFEALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEE-MEHS 455

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              P+   Y   I  +C+    +  +++ + +    C  +  +   +I G C  G ++ A
Sbjct: 456 QIKPSIVSYTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMDSA 515

Query: 573 RKVFTNLRERKLLTEA 588
            K+   +   +L+  A
Sbjct: 516 IKLLEEMICNELVPTA 531


>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 111/464 (23%), Positives = 211/464 (45%), Gaps = 28/464 (6%)

Query: 151 NFASYNALAYCLSRNNLFR------AADQVPE-------LMDS---QGRIAEMLEILEKM 194
           + A+YN+L Y L   ++         A  VP+       L+D    Q R+ + +  L + 
Sbjct: 202 SIATYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRET 261

Query: 195 RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
                 P V ++ A++       ++D     +  M K  +  DV +Y  L+ GLC  G +
Sbjct: 262 GGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSM 321

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
               E   +M+ +G+  D   Y +L  G    G +  A  +++ ++ +G   DL  Y  +
Sbjct: 322 EEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTIL 381

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
           I G C++   ++++KL E  +   L     T   LL    + GR+D    LL +ME +  
Sbjct: 382 ICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVI-- 439

Query: 375 SVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALY 433
            +  DL  +    V  EE    A++++EE+  K  Y +  + + ++  L E G + +A  
Sbjct: 440 GLKPDLLTYSRGAV--EE----AIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQM 493

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
            F  +   ++    + ++I I  + + G+I EA   + +IIE    P++  +N L  G C
Sbjct: 494 YFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFC 553

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           K G++  A+ L+ D +      PT   Y   +   C  G+   + ++L+EM  +   P +
Sbjct: 554 KKGKLAEAVKLL-DTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQ 612

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +  + ++ G+CK G L E+ ++   +  R L  +   I Y+ ++
Sbjct: 613 ITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPD--QITYNTVI 654



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/465 (21%), Positives = 199/465 (42%), Gaps = 53/465 (11%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           +  G + +  +YN LA      N FR            G I+   +++++M  N   PD+
Sbjct: 332 ENHGVEPDIVTYNILA------NGFRIL----------GLISGAWKVVQRMLLNGLNPDL 375

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV--------- 254
             YT +I       N++   ++ E+M    ++  ++ Y  L+  LCK GR+         
Sbjct: 376 VTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHE 435

Query: 255 -------------VRGH-----ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
                         RG      EL+ EM    I  +  +   +I GL  +G + +A    
Sbjct: 436 MEVIGLKPDLLTYSRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYF 495

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             +  S    ++ +YN +I G  ++    +A + ++  ++  ++P   T N L+    + 
Sbjct: 496 DSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKK 555

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSSVP 413
           G++    KLL   + +K          +  L+    +E  +    D+  E++ K      
Sbjct: 556 GKLAEAVKLL---DTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQ 612

Query: 414 I-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
           I Y +++  L + G + +++ L   M    L  + ++++  IQ   ++ D+ +A + HN+
Sbjct: 613 ITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQ 672

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEI-DAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           +++ S  PS   YN L  GLC  G + DA  +LV   L + +   T+  Y   I   C  
Sbjct: 673 MLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVT--LQDQSIRLTKVAYTTIIKAHCAK 730

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           G+ +  +   ++M + G   +    SA+I+ +CK   + +A+  F
Sbjct: 731 GDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFF 775



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/441 (21%), Positives = 195/441 (44%), Gaps = 25/441 (5%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E LE    M  +  +PD+  Y  +         +    +V + M  + +  D++ Y
Sbjct: 319 GSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTY 378

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G C+ G +    +L  +M   G+ +    Y VL+  L   G++ +A  LL ++  
Sbjct: 379 TILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEV 438

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + DL  Y+            ++A +L+E      + P+    + ++    E G +  
Sbjct: 439 IGLKPDLLTYSR--------GAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISE 490

Query: 362 FFKLLAQM---EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIY 415
                AQM      K  VA ++  +   + G  K   I  A+  ++++  KG S ++  +
Sbjct: 491 -----AQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTF 545

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+    + G++ +A+ L   ++   L   S++++  +  + E GD+    +  +++  
Sbjct: 546 NSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEA 605

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
            +  P+   Y  + KGLCK G +  ++ L++         P +  Y   I   C++ + +
Sbjct: 606 KAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYAR-GLFPDQITYNTVIQSFCKAHDLQ 664

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           K  ++ N+M Q    P+ V  + +I+G+C +G L++A ++   L+++ +      + Y  
Sbjct: 665 KAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSI--RLTKVAYTT 722

Query: 596 ILIEHMKKKTADLVLSGLKFF 616
           I+  H  K     V + L FF
Sbjct: 723 IIKAHCAKGD---VQNALVFF 740



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 82/191 (42%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E +++L+ M      PD   Y  +I+      +L    ++  +M +  ++   + 
Sbjct: 625 EGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVT 684

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI GLC  G +     L   +++  I + +  Y  +I+    +G V  A      +V
Sbjct: 685 YNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMV 744

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G+   +  Y+++I  LC+      A   F + +   + PD      +L      G  +
Sbjct: 745 ERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPN 804

Query: 361 NFFKLLAQMEK 371
           + F++ A M K
Sbjct: 805 SVFEIFAMMIK 815



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 109/259 (42%), Gaps = 63/259 (24%)

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           ++++L  A      V  AL++  KM+ LNL+V+  +++ ++  ++   DI+   + +N+ 
Sbjct: 170 VWDMLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYN-SLLYNLRHTDIM--WDVYNE- 225

Query: 474 IEMSQV------------------------------------PSVAAYNCLTKGLCKIGE 497
           I+ S V                                    PSV ++N L  G CK+G 
Sbjct: 226 IKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGS 285

Query: 498 IDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           +D A     MM+    L      P  + Y + +  +C +G  E+ +E  N+M   G  P+
Sbjct: 286 VDVAKSFFCMMIKYGLL------PDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPD 339

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN--TIVYDEILIEHMKKKTADLVL 610
            V  + + +G    G +  A KV     +R LL   N   + Y  ++  H +    +   
Sbjct: 340 IVTYNILANGFRILGLISGAWKVV----QRMLLNGLNPDLVTYTILICGHCQMGNIE--- 392

Query: 611 SGLKFFGLESKLKAKGCKL 629
              + F L+ K+ ++G KL
Sbjct: 393 ---ESFKLKEKMLSQGLKL 408


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 192/448 (42%), Gaps = 48/448 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  +   ++E +  +   PDV  Y  +I        + + L++ + M    V  DV+ Y
Sbjct: 159 GKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQLLDRMS---VSPDVVTY 215

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T++  LC  G++    E+     +     D   Y +LIE    E  VG+A  LL ++ D
Sbjct: 216 NTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRD 275

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + D+  YN +I G+C+  + D+A +           P+  T N +L      GR  +
Sbjct: 276 KGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMD 335

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
             K LA+M +                                   KG S SV  +NIL+ 
Sbjct: 336 AEKFLAEMIR-----------------------------------KGCSPSVVTFNILIN 360

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L   G + +A+ +  KM       NSLS++  +    +   +  A E  + ++     P
Sbjct: 361 FLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYP 420

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            +  YN L   LCK G++D A+ ++   LG+    P    Y   I  + + G+ +  I++
Sbjct: 421 DIVTYNTLLTALCKDGKVDVAVEILNQ-LGSKGCSPVLITYNTVIDGLSKVGKTDDAIKL 479

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           L+EM  +G  P+ +  S ++ G+ + G ++EA   F +L E  +  + N I Y+ I++  
Sbjct: 480 LDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEE--MGVKPNAITYNSIMLGL 537

Query: 601 MKKKTADLVLSGLKFFGLESKLKAKGCK 628
            K +     +  L +      + A+GCK
Sbjct: 538 CKARQTVRAIDFLAY------MVARGCK 559



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 177/380 (46%), Gaps = 17/380 (4%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           L DS G++ E +E+L++  +  C PDV  YT +I     E  +   +++ +EM+    + 
Sbjct: 222 LCDS-GKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKP 280

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           DV+ Y  LI G+CK GR+         M   G   +   + +++  +   G+   A   L
Sbjct: 281 DVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFL 340

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            +++  G    +  +N +I  LCR     +A  + E   Q    P+  + NPLL    + 
Sbjct: 341 AEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKD 400

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI 414
            +M+   + L  M  +      D+  +   L    K+ ++ +A+++  +L  KG S V I
Sbjct: 401 KKMERAIEYLDIM--VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLI 458

Query: 415 -YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN ++  L ++G+   A+ L  +M+G  L+ + +++S  +      G + EA    + +
Sbjct: 459 TYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDL 518

Query: 474 IEMSQVPSVAAYNCLTKGLCK----IGEID-AAMMLVRDCLGNVASGPTEFKYALTILHV 528
            EM   P+   YN +  GLCK    +  ID  A M+ R C       PTE  Y + I  +
Sbjct: 519 EEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGC------KPTETSYMILIEGL 572

Query: 529 CRSGEAEKIIEVLNEMTQEG 548
              G A++ +E+LNE+   G
Sbjct: 573 AYEGLAKEALELLNELCSRG 592



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 180/409 (44%), Gaps = 5/409 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I   L++L++M      PDV  Y  ++R L     L   + V +   +     DV+ Y
Sbjct: 194 GEIGSALQLLDRMS---VSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITY 250

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI   CK   V +  +L  EM++ G   D   Y VLI G+  EG++ +A   L  +  
Sbjct: 251 TILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPS 310

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + ++  +N I+  +C   ++  A K     ++   +P   T N L+      G +  
Sbjct: 311 YGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGR 370

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMG 420
              +L +M +   +  +         + K++++  A++  + +  +G Y  +  YN L+ 
Sbjct: 371 AIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLT 430

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           AL + G+V  A+ +  ++         ++++  I    + G   +A +  +++      P
Sbjct: 431 ALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKP 490

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            +  Y+ L  GL + G++D A+    D L  +   P    Y   +L +C++ +  + I+ 
Sbjct: 491 DIITYSTLVGGLSREGKVDEAIAFFHD-LEEMGVKPNAITYNSIMLGLCKARQTVRAIDF 549

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           L  M   GC P E     +I G+   G  +EA ++   L  R ++ +++
Sbjct: 550 LAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKKSS 598



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 161/350 (46%), Gaps = 10/350 (2%)

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           L + G +  G +   +M   G + D      LI GL   GK  KA  +++ L DSG   D
Sbjct: 120 LVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPD 179

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL- 366
           +  YN +I G C+  +   A +L +   +  ++PD  T N +L    + G++    ++L 
Sbjct: 180 VITYNVLISGYCKTGEIGSALQLLD---RMSVSPDVVTYNTILRTLCDSGKLKEAMEVLD 236

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
            QM++  +          E    KE  +  A+ + +E++ KG    V  YN+L+  + + 
Sbjct: 237 RQMQRECYPDVITYTILIEATC-KESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKE 295

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G + +A+     M     + N ++ +I ++    +G  ++A +   ++I     PSV  +
Sbjct: 296 GRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTF 355

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           N L   LC+ G I  A+ ++   +      P    Y   +  +C+  + E+ IE L+ M 
Sbjct: 356 NILINFLCRKGLIGRAIDVLEK-MPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMV 414

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK---LLTEANTIV 592
             GC P+ V  + +++ +CK G ++ A ++   L  +    +L   NT++
Sbjct: 415 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVI 464



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 96/225 (42%), Gaps = 16/225 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q G   N  SYN L + L ++     A +  ++M S+G                C PD+ 
Sbjct: 380 QHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRG----------------CYPDIV 423

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  ++  L  +  +D  + +  ++        ++ Y T+I GL K G+     +L  EM
Sbjct: 424 TYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEM 483

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K  G+  D   Y  L+ GL  EGKV +A     DL + G + +   YNSI+ GLC+ +Q 
Sbjct: 484 KGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQT 543

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            +A       V     P  ++   L+   A  G      +LL ++
Sbjct: 544 VRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNEL 588


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 103/477 (21%), Positives = 203/477 (42%), Gaps = 59/477 (12%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177
           T D V  VL+   +P LAS+ F WA +Q+ ++H   +YNA    L +             
Sbjct: 3   TEDDVIHVLENIKSPKLASRVFKWAARQEDFEHTVFTYNAYLNALVKG------------ 50

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
               G  ++  +I + M    C P+++ Y  ++R L  +   DA L + ++M+  ++   
Sbjct: 51  ----GHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPT 106

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
                 L+  LCK G+V   +EL++ + +   L DR  Y +L  GL    ++ +A  +  
Sbjct: 107 TFIVNMLVSCLCKNGKVDAAYELYKRLSDECSL-DRISYNMLTYGLCKADQIDRALAVFG 165

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ----DDLAPDFSTVNPLLVCC 353
           ++ ++     L  YN ++ G CR  + ++A  L E  ++     D+ PD  + N ++   
Sbjct: 166 EMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGF 225

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
            +  ++     +L +M                                  +K     +V 
Sbjct: 226 CKARQLPTARYVLRRM----------------------------------IKSGCSPNVV 251

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            +N L+  L   G++ +A  +F  M   N E  ++++++ I  H  +  I +A +    +
Sbjct: 252 TFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDM 311

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           +     P+V  Y  L  GLC   +++ A+ +++  + +    P    Y   I  +C+ G+
Sbjct: 312 LRRGVEPNVYTYTALIGGLCDANKVEDALEILKR-MSSTGREPNVVTYTRVIGALCKGGQ 370

Query: 534 AEKIIEVLNEMT---QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
            E+  ++ N+        C P+    S II  +C+     EA + F  + E KL+ +
Sbjct: 371 IERATKLFNDAMGSRTAKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLRMVESKLVAK 427



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 143/369 (38%), Gaps = 60/369 (16%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           SYN L Y L +      ADQ          I   L +  +M  N   P +  Y  ++   
Sbjct: 143 SYNMLTYGLCK------ADQ----------IDRALAVFGEMEENAVVPSLLTYNGLLYGY 186

Query: 214 AAERNLDACLRVWEEM----KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
                ++  + + EEM    K   V  D+ +Y T+I G CK  ++     + R M ++G 
Sbjct: 187 CRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGC 246

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
             +   +  L++GL   GK+ +A  + + +V+         Y  +I G  R  + DKA  
Sbjct: 247 SPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKAND 306

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG 389
            F   ++  + P+  T   L+    +  ++++  ++L +M                   G
Sbjct: 307 YFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSS----------------TG 350

Query: 390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG---LNLEVN 446
           +E                   +V  Y  ++GAL + G++++A  LF    G      + +
Sbjct: 351 RE------------------PNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPD 392

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           S ++S  I         LEA E   +++E   V     Y  +  GL  + E +    + R
Sbjct: 393 SYAYSTIIYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGLELVQETEK---VER 449

Query: 507 DCLGNVASG 515
            CL   A G
Sbjct: 450 VCLEASAHG 458


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 173/354 (48%), Gaps = 6/354 (1%)

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           E D++ + +L+ G C+G R+     +F  M E G   +  IY  +I+GL    +V  A D
Sbjct: 148 EPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALD 207

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           LL  +   G R D   YNS+I GLC   ++D A ++     + ++ PD  T N L+  C 
Sbjct: 208 LLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACV 267

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSS 411
           + GR+    +L  +M  ++ S+  D+  +   + G     R+  A  +F  +  KG +  
Sbjct: 268 KEGRISEAEELYEEM--IRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPD 325

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           V  Y+IL+    +  +V+  + LF +M    +  N++++++ IQ +  +G +  A E   
Sbjct: 326 VVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFK 385

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
            ++     P++  YN L  GLC  G+I+ A++++ D +           Y + I  +C++
Sbjct: 386 WMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILAD-MQKSGMDADIVTYNIIIRGMCKA 444

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
           GE     ++   +  +G  P+    +A++ G+ K G   EA  +F  ++E  +L
Sbjct: 445 GEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDGIL 498



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 189/408 (46%), Gaps = 12/408 (2%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P +  ++ ++  ++  +  D  + +WE+M+   +  ++     L+   C+  ++      
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             +M + G   D   +G L+ G     ++  A  +   +V+ GY  ++ IYN+II GLC+
Sbjct: 139 LGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCK 198

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            KQ D A  L      D + PD  T N L+      GR D+  ++++ M K +  +  D+
Sbjct: 199 SKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKRE--IYPDV 256

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             F   +    KE RI  A +++EE+  +     +  Y++L+  L     + +A  +FG 
Sbjct: 257 FTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGF 316

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M       + +++SI I  + +S  +    +   ++ +   V +   Y  L +G C+ G+
Sbjct: 317 MVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGK 376

Query: 498 IDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           ++ A  + +     V  G  P    Y + +  +C +G+ EK + +L +M + G   + V 
Sbjct: 377 LNVAEEIFK---WMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVT 433

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
            + II GMCK G + +A  ++ +L  + L  +  T  Y  +++   KK
Sbjct: 434 YNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWT--YTAMMLGLYKK 479



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 154/317 (48%), Gaps = 5/317 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           RI + L + ++M     +P+V  Y  +I  L   + +D  L +   M+ D +  D + Y 
Sbjct: 166 RIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYN 225

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +LI GLC  GR      +   M +  I  D   +  LI+  V EG++ +A +L ++++  
Sbjct: 226 SLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRR 285

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
               D+  Y+ +I GLC   + D+A ++F   V     PD  T + L+    +  ++++ 
Sbjct: 286 SLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHG 345

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILM 419
            KL  +M +    V  +   +   + G  +  ++ +A ++F+ +   G   ++  YN+L+
Sbjct: 346 MKLFCEMSQR--GVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLL 403

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L + G+++KAL +   M+   ++ + ++++I I+   ++G++ +A + +  +      
Sbjct: 404 HGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLT 463

Query: 480 PSVAAYNCLTKGLCKIG 496
           P +  Y  +  GL K G
Sbjct: 464 PDIWTYTAMMLGLYKKG 480



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 118/263 (44%), Gaps = 5/263 (1%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           + GR  +   ++  M +    PDVF + A+I     E  +     ++EEM +  ++ D++
Sbjct: 233 NSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIV 292

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI GLC   R+    ++F  M   G   D   Y +LI G     KV     L  ++
Sbjct: 293 TYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM 352

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   +   Y  +I G CR  + + A ++F+  V   + P+  T N LL    + G++
Sbjct: 353 SQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKI 412

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           +    +LA M+  K  + AD+  +   + G  K   +  A D++  L  KG +  +  Y 
Sbjct: 413 EKALVILADMQ--KSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYT 470

Query: 417 ILMGALLEIGEVKKALYLFGKMR 439
            +M  L + G   +A  LF KM+
Sbjct: 471 AMMLGLYKKGLRGEADALFRKMK 493



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 16/201 (7%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           +  +Y+ L Y L   +    A+Q+   M S+G                C PDV  Y+ +I
Sbjct: 290 DIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKG----------------CFPDVVTYSILI 333

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
                 + ++  ++++ EM +  V  + + Y  LI G C+ G++    E+F+ M   G+ 
Sbjct: 334 NGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVP 393

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
            +   Y VL+ GL   GK+ KA  +L D+  SG  AD+  YN II G+C+  +   A+ L
Sbjct: 394 PNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDL 453

Query: 331 FEVTVQDDLAPDFSTVNPLLV 351
           +       L PD  T   +++
Sbjct: 454 YCSLNLKGLTPDIWTYTAMML 474



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 16/159 (10%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+G   N  +Y  L     R      A+++ + M   G                  P++ 
Sbjct: 354 QRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCG----------------VPPNII 397

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  ++  L     ++  L +  +M+K  ++AD++ Y  +I G+CK G V    +L+  +
Sbjct: 398 TYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSL 457

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
              G+  D   Y  ++ GL  +G  G+A  L + + + G
Sbjct: 458 NLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDG 496


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 209/485 (43%), Gaps = 56/485 (11%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G  HN  +Y+ L  C  R +      Q+P            L +L KM +   +P++   
Sbjct: 111 GMPHNHYTYSILINCFCRRS------QLPL----------ALAVLGKMMKLGYEPNIVTL 154

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           ++++      + +   + + ++M     + + + + TLI GL    +      L   M  
Sbjct: 155 SSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVA 214

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G   D   YGV++ GL   G    A  LL  +        + IY +II GLC+ K  D 
Sbjct: 215 KGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDD 274

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-------EKLKFSVAAD 379
           A  LF+      + P+  T + L+ C    GR  +  +LL+ M       +   FS   D
Sbjct: 275 ALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALID 334

Query: 380 ----------LEKFFEFLVGK------------------EERIMMALDVFEELKGKG-YS 410
                      EK ++ +V +                   +R+  A  +FE +  K  + 
Sbjct: 335 AFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFP 394

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            V  Y+ L+    +   V + + LF +M    L  N+++++  IQ   ++GD   A E  
Sbjct: 395 DVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIF 454

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
            +++     P++  YN L  GLCK G+++ A M+V + L      PT + Y + I  +C+
Sbjct: 455 KEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA-MVVFEYLQRSKMEPTIYTYNIMIEGMCK 513

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA-- 588
           +G+ E   ++   ++ +G  P+ V  + +ISG C+ G+ EEA  +F  ++E   L  +  
Sbjct: 514 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGC 573

Query: 589 -NTIV 592
            NT++
Sbjct: 574 YNTLI 578



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 97/448 (21%), Positives = 196/448 (43%), Gaps = 22/448 (4%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           GY+ N  ++N L + L  +N                + +E + ++++M    C+PD+  Y
Sbjct: 181 GYQPNTVTFNTLIHGLFLHN----------------KASEAVALIDRMVAKGCQPDLVTY 224

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             ++  L    + D    +  +M++  +E  V+ Y T+I GLCK   +     LF+EM+ 
Sbjct: 225 GVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMET 284

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            GI  +   Y  LI  L   G+   A  LL D+++     D+  ++++I    +  +  +
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A KL++  V+  + P   T + L+       R+D   ++   M  +      D+  +   
Sbjct: 345 AEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM--VSKHCFPDVVSYSTL 402

Query: 387 LVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           + G  K +R+   +++F E+  +G   +   Y  L+  L + G+   A  +F +M    +
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             N ++++  +    ++G + +A      +      P++  YN + +G+CK G+++    
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L  + L      P    Y   I   CR G  E+   +  EM ++G  PN    + +I   
Sbjct: 523 LFCN-LSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRAR 581

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTI 591
            + G  E + ++   +R      +A+TI
Sbjct: 582 LRDGDREASAELIKEMRSCGFAGDASTI 609



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/477 (22%), Positives = 203/477 (42%), Gaps = 50/477 (10%)

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221
           LSRN L            S+ ++ + + +  +M ++   P +  ++ ++  +A     D 
Sbjct: 52  LSRNGL------------SELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDV 99

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
            + + E+M+   +  +   Y  LI   C+  ++     +  +M + G   +      L+ 
Sbjct: 100 VISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLN 159

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
           G     ++ +A  L+  +  +GY+ +   +N++I GL    +  +A  L +  V     P
Sbjct: 160 GYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQP 219

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVF 401
           D  T   ++    + G  D  F LL +ME+ K      +       + K + +  AL++F
Sbjct: 220 DLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLF 279

Query: 402 EELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
           +E++ KG   +V  Y+ L+  L   G    A  L   M    +  +  +FS  I   V+ 
Sbjct: 280 KEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKE 339

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVASG 515
           G ++EA + ++++++ S  PS+  Y+ L  G C    +D A      M+ + C  +V S 
Sbjct: 340 GKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSY 399

Query: 516 PTEFK-----------------------------YALTILHVCRSGEAEKIIEVLNEMTQ 546
            T  K                             Y   I  + ++G+ +   E+  EM  
Sbjct: 400 STLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVS 459

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           +G PPN +  + ++ G+CK+G LE+A  VF  L+  K+     TI    I+IE M K
Sbjct: 460 DGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM---EPTIYTYNIMIEGMCK 513



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 155/324 (47%), Gaps = 36/324 (11%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------------PELMDS---QGRI 184
           + KG + N  +Y++L  CL     +  A ++                  L+D+   +G++
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 342

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  ++ ++M +    P +  Y+++I        LD   +++E M       DV++Y TL
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTL 402

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK  RV  G ELFREM + G++ +   Y  LI+GL   G    A ++ K++V  G 
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  YN+++ GLC+  + +KA  +FE   +  + P   T N ++    + G++++ + 
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG------KEERIMMALDVFEELKGKGYSSVP---IY 415
           L   +  LK  V  D+  +   + G      KEE    A  +F+E+K  G  ++P    Y
Sbjct: 523 LFCNLS-LK-GVKPDVVAYNTMISGFCRKGSKEE----ADALFKEMKEDG--TLPNSGCY 574

Query: 416 NILMGALLEIGEVKKALYLFGKMR 439
           N L+ A L  G+ + +  L  +MR
Sbjct: 575 NTLIRARLRDGDREASAELIKEMR 598


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 124/508 (24%), Positives = 210/508 (41%), Gaps = 64/508 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAA-------------------DQVPELMDSQGRI 184
            Q G +    +Y+AL   LSR  +  A                    + V   +   G +
Sbjct: 172 SQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNV 231

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           A+   I++K+  +   PD F YT+MI     + +LD+ L+V+ +M K+  E + + Y TL
Sbjct: 232 ADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTL 291

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLC  GRV    +L REM  +GIL         I  L   G    A  L  D+ + G 
Sbjct: 292 INGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGC 351

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  Y ++I GLC       A  LF    +D + P+  T N L+    E  R+   F 
Sbjct: 352 EPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 411

Query: 365 LLAQMEKLKFSVAADLEKFFEF-----LVGKEERIMMALDVFEELKGKGYSS-VPIYNIL 418
           +L  M   +   + ++  + E      ++G  ++ M+   V   +  +G+S+ +  YN +
Sbjct: 412 VLNLMG--RNGCSPNIVTYNEMIKGYCILGDPKKAML---VMNNMLQRGHSANLVTYNTI 466

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G    AL +   MR    + +  S++  I    +   +  A    N++++   
Sbjct: 467 IKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGL 526

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRD-----CLGNVA---------------SG--- 515
            P+   Y  L  G CK  ++D A  L+       C  NV                SG   
Sbjct: 527 CPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEE 586

Query: 516 -----------PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
                      P    Y   I  +C++G     +E+ N+M ++GC PN +  S++I  + 
Sbjct: 587 LCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALG 646

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTIV 592
           + G +EEA  +F  L    L+ +  T V
Sbjct: 647 QEGKVEEAENLFAELERHGLIPDEITYV 674



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 181/404 (44%), Gaps = 6/404 (1%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+  +A  +  L+ + ++  +  +FAY+A++  L+      A +  +  M  + V+ +++
Sbjct: 157 SKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLL 216

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I  LCK G V     + +++ E+ +  D   Y  +I G   +  +  A  +   +
Sbjct: 217 IYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQM 276

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   +   Y+++I GLC   + ++A+ L    +   + P   T    ++   +MG  
Sbjct: 277 AKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCY 336

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYN 416
           ++ ++L   M+        ++  +   + G      + +A+ +F  +   G + +   YN
Sbjct: 337 EDAWRLFVDMKNK--GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYN 394

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  L+E   +K A  +   M       N ++++  I+ +   GD  +A    N +++ 
Sbjct: 395 ALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQR 454

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
               ++  YN + KG C  G   +A+ ++ D + +    P E+ Y   I   C+  + E 
Sbjct: 455 GHSANLVTYNTIIKGYCDSGNTTSALRIL-DLMRDGGCKPDEWSYTELICGFCKISKMES 513

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
              + NEM  +G  PNEV  +A+I G CK   L+ A  +  +++
Sbjct: 514 AFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMK 557



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 166/383 (43%), Gaps = 6/383 (1%)

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M+   C+P+V+ YTA+I  L     L   + ++  M +D V  + + Y  LI  L +  R
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 405

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           +     +   M  NG   +   Y  +I+G    G   KA  ++ +++  G+ A+L  YN+
Sbjct: 406 IKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 465

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           II G C       A ++ ++       PD  +   L+    ++ +M++ F L  +M  + 
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEM--VD 523

Query: 374 FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKK 430
             +  +   +   + G  K+E++  A  + E +K  G   +V  YN+L+  L +      
Sbjct: 524 DGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSG 583

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A  L   M    +  N ++++  I    ++G    A E  NK+IE   +P++  Y+ L +
Sbjct: 584 AEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIR 643

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
            L + G+++ A  L  + L      P E  Y   I     SG+ E     L  M + GC 
Sbjct: 644 ALGQEGKVEEAENLFAE-LERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQ 702

Query: 551 PNEVICSAIISGMCKHGTLEEAR 573
           P       +I G+     L + R
Sbjct: 703 PTLWTYGVLIKGLKNEYLLADQR 725



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 108/518 (20%), Positives = 212/518 (40%), Gaps = 80/518 (15%)

Query: 134 LASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG------RIAEM 187
           +A   FH   +  G   N  +YNAL   L  N   + A  V  LM   G         EM
Sbjct: 373 VAIGLFHRMSRD-GVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431

Query: 188 LE-------------ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
           ++             ++  M +     ++  Y  +I+      N  + LR+ + M+    
Sbjct: 432 IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC 491

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           + D  +Y  LI G CK  ++     LF EM ++G+  +   Y  LI+G   + K+  A  
Sbjct: 492 KPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATS 551

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           LL+ +  SG R ++  YN +I GL +   F  A +L +V +++ + P+  T   ++    
Sbjct: 552 LLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLC 611

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVP 413
           + G                                      +AL++F ++  +G   ++ 
Sbjct: 612 KNGSTS-----------------------------------LALEMFNKMIEQGCLPNLL 636

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            Y+ L+ AL + G+V++A  LF ++    L  + +++   I+ ++ SG +  A     ++
Sbjct: 637 TYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRM 696

Query: 474 IEMSQVPSVAAYNCLTKGL-CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           I+    P++  Y  L KGL  +    D  +  + D + N +     F Y  T        
Sbjct: 697 IKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCS-----FGYQTT-------- 743

Query: 533 EAEKIIEVLNEMTQEGCPPNEV-ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
             +  + V++    E  P   V + +A++S +   G   EA ++  ++  + L  +    
Sbjct: 744 -DQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQE-- 800

Query: 592 VYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKL 629
            Y+ +L   ++ +  DL +      G+   +  +GC++
Sbjct: 801 AYNSLLCSLLRVRNVDLAM------GVFKHMSTQGCEV 832



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 8/136 (5%)

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           C   E  A  M   D L         F Y+  ++H+ R G    +++  + M  EG  PN
Sbjct: 155 CHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPN 214

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSG 612
            +I +A+I+ +CK G + +A  +   + E ++    +T  Y  +++ H +K   D   S 
Sbjct: 215 LLIYNAVINALCKDGNVADAETIMKKVFESEM--SPDTFTYTSMILGHCRKHDLD---SA 269

Query: 613 LKFFGLESKLKAKGCK 628
           L+ F   +++  +GC+
Sbjct: 270 LQVF---NQMAKEGCE 282



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 2/136 (1%)

Query: 178 MDSQGRIAEMLEILEKM-RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           + + GR  E  E+L  M  + LC PD  AY +++  L   RN+D  + V++ M     E 
Sbjct: 774 LSTAGRWFEANELLGSMISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 832

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
            +  Y  LI  LC+  R       F  M       D  +  VLI+GL+ +G      + L
Sbjct: 833 HLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFL 892

Query: 297 KDLVDSGYRADLGIYN 312
             +    Y     IY 
Sbjct: 893 HIMETRRYMPSFHIYT 908



 Score = 43.1 bits (100), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 24/186 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIR-----VLAAERNLDA-------CLRVWEE 228
            G++      L +M +  C+P ++ Y  +I+      L A++ L A       C   ++ 
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 742

Query: 229 MKKD--------LVEAD----VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
             +D        L E D    V     L+  L   GR    +EL   M   G+  D+  Y
Sbjct: 743 TDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAY 802

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
             L+  L+    V  A  + K +   G    L  Y  +I  LC++ +  +A   FE  + 
Sbjct: 803 NSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLM 862

Query: 337 DDLAPD 342
               PD
Sbjct: 863 RTWNPD 868


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/477 (21%), Positives = 203/477 (42%), Gaps = 59/477 (12%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177
           T D V  VL+   +P LAS+ F WA +Q+ ++H   +YNA    L +             
Sbjct: 3   TEDDVIHVLENIKSPKLASRVFKWAARQEDFQHTVFTYNAYLNALVKG------------ 50

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
               G  ++  +I + M    C P+++ Y  ++R L  +   DA L + ++M+  ++   
Sbjct: 51  ----GHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPT 106

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
                 L+  LCK G+V   +EL++ + +   L DR  Y +L  GL    ++ +A  +  
Sbjct: 107 TFIVNMLVSCLCKNGKVDAAYELYKRLSDECSL-DRISYNMLTYGLCKADQIDRALAVFG 165

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ----DDLAPDFSTVNPLLVCC 353
           ++ ++     L  YN ++ G CR  + ++A  L E  ++     D+ PD  + N ++   
Sbjct: 166 EMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGF 225

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
            +  ++     +L +M                                  +K     +V 
Sbjct: 226 CKARQLPTARYVLRRM----------------------------------IKSGCSPNVV 251

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            +N L+  L   G++ +A  +F  M   N E  ++++++ I  H  +  I +A +    +
Sbjct: 252 TFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDM 311

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           +     P+V  Y  L  GLC   +++ A+ +++  + +    P    Y   I  +C+ G+
Sbjct: 312 LRRGVEPNVYTYTALIGGLCDANKVEDALEILKR-MSSTGREPNVVTYTRVIGALCKGGQ 370

Query: 534 AEKIIEVLNEMT---QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
            E+  ++ N+        C P+    S I+  +C+     EA + F  + E KL+ +
Sbjct: 371 IERATKLFNDAMGSRTAKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLRMVESKLVAK 427



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 143/369 (38%), Gaps = 60/369 (16%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           SYN L Y L +      ADQ          I   L +  +M  N   P +  Y  ++   
Sbjct: 143 SYNMLTYGLCK------ADQ----------IDRALAVFGEMEENAVVPSLLTYNGLLYGY 186

Query: 214 AAERNLDACLRVWEEM----KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
                ++  + + EEM    K   V  D+ +Y T+I G CK  ++     + R M ++G 
Sbjct: 187 CRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGC 246

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
             +   +  L++GL   GK+ +A  + + +V+         Y  +I G  R  + DKA  
Sbjct: 247 SPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKAND 306

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG 389
            F   ++  + P+  T   L+    +  ++++  ++L +M                   G
Sbjct: 307 YFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSS----------------TG 350

Query: 390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG---LNLEVN 446
           +E                   +V  Y  ++GAL + G++++A  LF    G      + +
Sbjct: 351 RE------------------PNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPD 392

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           S ++S  +         LEA E   +++E   V     Y  +  GL  + E +    + R
Sbjct: 393 SYAYSTIVYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGLELVQETEK---VER 449

Query: 507 DCLGNVASG 515
            CL   A G
Sbjct: 450 VCLEASAHG 458


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 192/418 (45%), Gaps = 41/418 (9%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E +++ E M  N  +P + A T ++  LA +R  D   +V+++M +  VEA++  Y  LI
Sbjct: 148 EAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLI 207

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              CK G V +   L  EM+   +  D   Y  LI     +G   +A  +   +   G +
Sbjct: 208 HACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIK 267

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  YNS+I G C+  +  +A +LF+     D  P+  T   L+         D + +L
Sbjct: 268 PDIVTYNSLIHGFCKEGRMREAMRLFKEI--RDATPNHVTYTTLI---------DGYCRL 316

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLE 424
                        DL++              AL + EE++ +G Y +V  YN ++  L E
Sbjct: 317 ------------NDLDQ--------------ALRLREEMEAQGLYPTVVTYNSILRKLCE 350

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
           IG ++ A  L  +M    +E ++++ +  I  + + GD+  A +  N+++E         
Sbjct: 351 IGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFT 410

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y  L  G CKI E+D A  L+   L +    P+   Y+  +   C     E ++++ +E 
Sbjct: 411 YKALIHGFCKIREMDGAKELLLSML-DAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEF 469

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
            ++G   ++ +  A+I   CK   ++ A+K+F+ ++E+  L   ++++Y  +   + K
Sbjct: 470 VRKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQEKGTL--GDSVIYTSLAYAYWK 525



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 78/196 (39%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI +  ++L +M     +PD      +I       ++ + L+V   M +  ++ D   Y
Sbjct: 352 GRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTY 411

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G CK   +    EL   M + G       Y  L++G   +        L  + V 
Sbjct: 412 KALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVR 471

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D  +Y ++I   C+ +Q D A K+F +  +     D      L     ++G+ + 
Sbjct: 472 KGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQEKGTLGDSVIYTSLAYAYWKLGKANA 531

Query: 362 FFKLLAQMEKLKFSVA 377
              LL +M K +  + 
Sbjct: 532 ASDLLDEMYKRRLMIT 547



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 50/114 (43%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P    Y+ ++     ++N +A L++ +E  +  +  D   Y  LI   CK  +V    ++
Sbjct: 441 PSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKKI 500

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
           F  M+E G L D  IY  L       GK   A DLL ++        L IY ++
Sbjct: 501 FSLMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLDEMYKRRLMITLKIYRAL 554


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 186/414 (44%), Gaps = 28/414 (6%)

Query: 114 LRRVTPDLVAEVLKVENNPTLASKFFHWAGK----QKGYKHNFASYNALAYCLSRNNLFR 169
           LR +TP +V   + +     L    F ++      ++GY+ N  +   +   L  N   R
Sbjct: 106 LRGITPSIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVR 165

Query: 170 AADQVPELMDSQGRIA-------------------EMLEILEKMRRNLCKPDVFAYTAMI 210
            A +  + + +QG +                    E  E+L KM   + +P+V  Y  ++
Sbjct: 166 KALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIV 225

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
             L  +  +     ++ ++    ++ DV  Y  LI G C  G+      L  +M +  + 
Sbjct: 226 DGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVN 285

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
           ++   Y +LI+ L  +G +GKA D+   +++ G R DL  +N+++ G C      +A KL
Sbjct: 286 LNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKL 345

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG- 389
           F+   +  + PD  + N L++   +  R+D    L  +M   K  +A ++  +   + G 
Sbjct: 346 FDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKK--LAPNIVTYSSLIDGL 403

Query: 390 -KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS 447
            K  RI  A ++F  +   G S +V  YNI++ AL +I  V KA+ LF  M    L  N 
Sbjct: 404 CKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNV 463

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            S++I I  + +S  I EA     ++   + VP    YNCL  GLCK G I  A
Sbjct: 464 SSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHA 517



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 160/353 (45%), Gaps = 16/353 (4%)

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D + Y TLI GLCK G      EL  +M+   +  +  IY ++++GL  +G V +A DL 
Sbjct: 182 DEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLY 241

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            D+V  G   D+  Y  +I G C + Q+ +  +L    V  ++  +  T N L+    + 
Sbjct: 242 SDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKK 301

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVP 413
           G +     +   M  ++     DL  F   + G      ++ A  +F+     G +  V 
Sbjct: 302 GMLGKAHDMRNLM--IERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVW 359

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YNIL+    +   + +AL LF KM    L  N +++S  I    +SG I  A E  + I
Sbjct: 360 SYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAI 419

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHV 528
            +    P+V  YN +   LCKI  +D A     +M  R    NV+S      Y + I   
Sbjct: 420 HDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSS------YNILINGY 473

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           C+S   ++ + +  EM +    P+ V  + +I G+CK G +  A ++F  + +
Sbjct: 474 CKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHD 526



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 164/391 (41%), Gaps = 2/391 (0%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P +   + +I       ++     V   + K   + + +   T++ GLC  G V +  E 
Sbjct: 111 PSIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEF 170

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              +   G L+D   YG LI GL   G   +A +LL  +     R ++ IYN I+ GLC+
Sbjct: 171 HDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCK 230

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
                +A  L+   V   + PD  T   L+     +G+     +LL  M     ++    
Sbjct: 231 DGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYT 290

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
                  + K+  +  A D+   +  +G    +  +N LM       +V +A  LF    
Sbjct: 291 YNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFA 350

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              +  +  S++I I  + ++  I EA    NK+      P++  Y+ L  GLCK G I 
Sbjct: 351 ECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRIS 410

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A  L    + +    P    Y + +  +C+    +K IE+ N M + G  PN    + +
Sbjct: 411 YAWELF-SAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNIL 469

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           I+G CK   ++EA  +F  +  R L+ ++ T
Sbjct: 470 INGYCKSKRIDEAMNLFEEMHRRNLVPDSVT 500



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 150/350 (42%), Gaps = 4/350 (1%)

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L ++M   GI        +LI      G +G A  +L  ++  GY+ +     +I+ GL
Sbjct: 99  SLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGL 158

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C   +  KA +  +  V      D  T   L+    ++G     F+LL +ME        
Sbjct: 159 CINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNV 218

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
            +       + K+  +  A D++ ++ G+G    V  Y  L+     +G+ ++   L   
Sbjct: 219 VIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCD 278

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M   N+ +N  +++I I    + G + +A +  N +IE  Q P +  +N L  G C   +
Sbjct: 279 MVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYND 338

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           +  A  L  D        P  + Y + I+  C++   ++ + + N+M  +   PN V  S
Sbjct: 339 VVEARKLF-DTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYS 397

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           ++I G+CK G +  A ++F+ + +       N I Y+ +L    K +  D
Sbjct: 398 SLIDGLCKSGRISYAWELFSAIHDGG--PSPNVITYNIMLDALCKIQLVD 445



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 106/239 (44%), Gaps = 19/239 (7%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGR-------------------IAEMLEIL 191
           N  +YN L   L +  +   A  +  LM  +G+                   + E  ++ 
Sbjct: 287 NVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLF 346

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           +        PDV++Y  +I        +D  L ++ +M    +  +++ Y +LI GLCK 
Sbjct: 347 DTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKS 406

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           GR+    ELF  + + G   +   Y ++++ L     V KA +L   + + G   ++  Y
Sbjct: 407 GRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSY 466

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           N +I G C+ K+ D+A  LFE   + +L PD  T N L+    + GR+ + ++L   M 
Sbjct: 467 NILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMH 525



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 64/143 (44%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GRI+   E+   +      P+V  Y  M+  L   + +D  + ++  M +  +  +V +
Sbjct: 406 SGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSS 465

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK  R+     LF EM    ++ D   Y  LI+GL   G++  A +L   + 
Sbjct: 466 YNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMH 525

Query: 301 DSGYRADLGIYNSIIGGLCRVKQ 323
           D G   D+  YN +     +++ 
Sbjct: 526 DGGPPVDVITYNILFDAFSKIQH 548



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 5/176 (2%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           SV  +N+++G+++++     A+ L  +M    +  + ++ SI I C+   G +  A    
Sbjct: 77  SVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSVL 136

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHV 528
             +++     +      + KGLC  GE+  A+    D +  VA G    E  Y   I  +
Sbjct: 137 GMVLKRGYQLNAITLTTIMKGLCINGEVRKALEF-HDSV--VAQGFLLDEVTYGTLINGL 193

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           C+ G   +  E+L++M  +   PN VI + I+ G+CK G + EAR +++++  R +
Sbjct: 194 CKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGI 249



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 97/209 (46%), Gaps = 5/209 (2%)

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A+ + +++  +G + S+   +IL+     +G +  A  + G +     ++N+++ +  ++
Sbjct: 97  AISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMK 156

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
               +G++ +A E H+ ++    +     Y  L  GLCKIG    A  L+    G V   
Sbjct: 157 GLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVR- 215

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    Y + +  +C+ G   +  ++ +++   G  P+    + +I G C  G   E  ++
Sbjct: 216 PNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRL 275

Query: 576 FTNLRERKLLTEANTIVYDEILIEHMKKK 604
             ++ +R +    N   Y+ ILI+ + KK
Sbjct: 276 LCDMVDRNV--NLNVYTYN-ILIDALCKK 301


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 175/398 (43%), Gaps = 38/398 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E  EI +KM+   C PD   Y  +I       N+    +V   M+++ +   +  Y
Sbjct: 521 GKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMY 580

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI GL K  R+V   +L  EM   G+  +   YG LI+G   EG + KA     ++ +
Sbjct: 581 NSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTE 640

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G  A++ I ++++ GL R+ + D+A  L +  V     PD                   
Sbjct: 641 NGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHEC---------------- 684

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
           F K       ++++                ++I  +LD  E  K     +  +YNI +  
Sbjct: 685 FLK-----SDIRYAAI--------------QKIADSLD--ESCKTFLLPNNIVYNIAIAG 723

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L + G+V  A   F  +       ++ ++   I  +  +G++ EA    ++++    VP+
Sbjct: 724 LCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPN 783

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           +  YN L  GLCK   +D A  L    L      P    Y   I   C+ G  +   ++ 
Sbjct: 784 IVTYNALINGLCKSENVDRAQRLFHK-LHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLK 842

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           ++M +EG  P+ V  SA+I+G+CKHG +E + K+   +
Sbjct: 843 DKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQM 880



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 123/536 (22%), Positives = 244/536 (45%), Gaps = 34/536 (6%)

Query: 71  SPPSDPKTFQLQR--HLSPIARFITDAFRKNQFQWGPQVVTELSKL---RR--------- 116
           +PP  P    L+R  HLS   R +    R       P++V+ + +L   RR         
Sbjct: 9   TPPL-PSRLHLRRPIHLS---RTLLWKLRDESHPAPPELVSRICRLVLLRRCNAISKLNF 64

Query: 117 -VTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA--- 171
             + D+V  VL+ +  NPT +  FF +  KQ+ ++ N  SY  L + LSR  ++      
Sbjct: 65  VFSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAY 124

Query: 172 -DQVPELMDSQGRIAEMLEILEKMRRNLC-KPDVFAYTAMIRVLAAERNLDA-CLRVWEE 228
            +Q+ +L   + R   + + L  + R     P VF    MI  +  E+ L    L V++ 
Sbjct: 125 LNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFD---MILKVYVEKGLTKNALYVFDN 181

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           M K      + +  +L+  L K G     H ++++M   GI+ D  +  +++     +GK
Sbjct: 182 MGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGK 241

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           V +A   +K + + G   ++  Y+S+I G   +   + A  + +   +  ++ +  T   
Sbjct: 242 VDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTL 301

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKG 406
           L+    +  +MD   K+L  M++ + ++  D   +   + G  +  +I  A+ + +E+  
Sbjct: 302 LIKGYCKQCKMDEAEKVLRGMQE-EAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLR 360

Query: 407 KGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G  +++ I N L+    + GE+ +A  +  +M   NL+ +S S++  +  +   G   E
Sbjct: 361 LGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSE 420

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A    +K+++    P+V  YN L KGLC++G  D A+  +   +      P E  Y+  +
Sbjct: 421 AFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQ-IWHLMMKXGVAPDEVGYSTLL 479

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
             + +    E    +  ++   G   + +  + +ISG+CK G + EA ++F  +++
Sbjct: 480 DGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKD 535



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/460 (21%), Positives = 193/460 (41%), Gaps = 36/460 (7%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I E   ++ +M     KPD ++Y  ++     E +      + ++M ++ +E  V+ 
Sbjct: 380 RGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLT 439

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TL+ GLC+ G      +++  M + G+  D   Y  L++GL        A  L KD++
Sbjct: 440 YNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDIL 499

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G+      +N++I GLC++ +  +A ++F+       +PD  T   L+    +   + 
Sbjct: 500 ARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVG 559

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
             FK+   ME+   S + ++       + K  R++   D+  E+  +G + ++  Y  L+
Sbjct: 560 QAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALI 619

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS-- 477
               + G + KA   + +M    L  N +  S  +      G I EA     K+++    
Sbjct: 620 DGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFF 679

Query: 478 ------------------------------QVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
                                          +P+   YN    GLCK G++D A      
Sbjct: 680 PDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFF-S 738

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            L      P  F Y   I     +G  ++   + +EM + G  PN V  +A+I+G+CK  
Sbjct: 739 MLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSE 798

Query: 568 TLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
            ++ A+++F  L ++ L    N + Y+ ++  + K    D
Sbjct: 799 NVDRAQRLFHKLHQKGLF--PNVVTYNTLIDGYCKIGNMD 836



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 97/432 (22%), Positives = 183/432 (42%), Gaps = 58/432 (13%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLC-KP 201
           +KG   N  +Y  L   YC                   Q ++ E  ++L  M+      P
Sbjct: 289 EKGVSRNVVTYTLLIKGYC------------------KQCKMDEAEKVLRGMQEEAALVP 330

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           D  AY  +I        +D  +R+ +EM +  ++ ++    +LI G CK G +     + 
Sbjct: 331 DERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVI 390

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             M +  +  D   Y  L++G   EG   +A +L   ++  G    +  YN+++ GLCRV
Sbjct: 391 TRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRV 450

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
             FD A +++ + ++  +APD    + LL         D  FK+                
Sbjct: 451 GAFDDALQIWHLMMKXGVAPDEVGYSTLL---------DGLFKM---------------- 485

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRG 440
                     E    A  +++++  +G++   I +N ++  L ++G++ +A  +F KM+ 
Sbjct: 486 ----------ENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKD 535

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
           L    + +++   I  + ++ ++ +A +    +      PS+  YN L  GL K   +  
Sbjct: 536 LGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVE 595

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
              L+ + +G     P    Y   I   C+ G  +K      EMT+ G   N +ICS ++
Sbjct: 596 XTDLLTE-MGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMV 654

Query: 561 SGMCKHGTLEEA 572
           SG+ + G ++EA
Sbjct: 655 SGLYRLGRIDEA 666



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 22/199 (11%)

Query: 400 VFEELKG--KGYSSVP-IYNILMGALLEIGEVKKALYLFGKM---------RGLNLEVNS 447
           +++EL G  + ++  P ++++++   +E G  K ALY+F  M         R  N  +N+
Sbjct: 141 IWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNN 200

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
           L         V++G+   A   + ++I +  VP V   + +    CK G++D A   V+ 
Sbjct: 201 L---------VKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKK 251

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            + N+   P    Y   I      G+ E    VL  M+++G   N V  + +I G CK  
Sbjct: 252 -MENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQC 310

Query: 568 TLEEARKVFTNLRERKLLT 586
            ++EA KV   ++E   L 
Sbjct: 311 KMDEAEKVLRGMQEEAALV 329



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 87/192 (45%), Gaps = 3/192 (1%)

Query: 397 ALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           AL VF+ +   G   S+   N L+  L++ GE   A Y++ +M  + +  +    SI + 
Sbjct: 175 ALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVN 234

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
              + G + EA     K+  +   P++  Y+ L  G   +G+++AA  +++  +      
Sbjct: 235 AFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLK-FMSEKGVS 293

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC-PPNEVICSAIISGMCKHGTLEEARK 574
                Y L I   C+  + ++  +VL  M +E    P+E     +I G C+ G +++A +
Sbjct: 294 RNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVR 353

Query: 575 VFTNLRERKLLT 586
           +   +    L T
Sbjct: 354 LLDEMLRLGLKT 365


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 209/468 (44%), Gaps = 29/468 (6%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQ----------VPELMDSQ---------GRIA 185
           Q G   N  SYN L   L R    R A            +P+++            G + 
Sbjct: 103 QLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQ 162

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           ++++++++M+    KP+++ Y+++I +L     +    +V  EM K  V  D + Y TLI
Sbjct: 163 KVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLI 222

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G CK G     ++LF EM+   I+ D   +  LI GL G GKV +A  L  +++  G+ 
Sbjct: 223 DGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFE 282

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D   Y ++I G C++ +  KA+ L    VQ  L P+  T   L     + G +D   +L
Sbjct: 283 PDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANEL 342

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGAL 422
           L +M   +  +  ++  +   + G  K   I+ A+ + EE+K  G +     Y  LM A 
Sbjct: 343 LHEM--CRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAY 400

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            + GE+ KA  L  +M    L+   ++F++ +     SG + +       ++E   +P+ 
Sbjct: 401 YKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNA 460

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEV 540
           A YN + K  C    +  +  + R   G  A G  P    Y + I   C++   ++   +
Sbjct: 461 ATYNSIMKQYCIRNNMRISTEIYR---GMCAQGVVPDSNTYNILIKGHCKARNMKEAWFL 517

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
             EM ++         +A+I G  K   L EAR++F  +R   L+  A
Sbjct: 518 HKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASA 565



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 188/392 (47%), Gaps = 9/392 (2%)

Query: 213 LAAERN-LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
           L+++R+ L   L+V+ E  +  V  +  +Y  L+  L + G++   H L   M+  G + 
Sbjct: 84  LSSKRDMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIP 143

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           D   Y  +I+G    G++ K   L+K++   G + +L  Y+SII  LC+  +  +  K+ 
Sbjct: 144 DVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVL 203

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG-- 389
              ++  + PD      L+    ++G     +KL ++ME  +  +  D   F   + G  
Sbjct: 204 REMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEARE--IVPDSIAFSALICGLS 261

Query: 390 KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
              +++ A  +F E+  KG+    + Y  L+    ++GE+KKA +L  +M  + L  N +
Sbjct: 262 GSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVV 321

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           +++       +SG++  A E  +++       +++ YN +  GLCK G I  A+ L+ + 
Sbjct: 322 TYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEE- 380

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
           +      P    Y   +    ++GE  K  E+L EM   G  P  V  + +++G+C  G 
Sbjct: 381 MKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGK 440

Query: 569 LEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           LE+  ++   + E+ ++  A T  Y+ I+ ++
Sbjct: 441 LEDGERLLKWMLEKGIMPNAAT--YNSIMKQY 470



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 135/282 (47%), Gaps = 13/282 (4%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+V  YTA+   L     LD    +  EM +  ++ ++  Y T++ GLCK G +++  +L
Sbjct: 318 PNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKL 377

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             EMKE G+  D   Y  L++     G++ KA +LL++++D G +  +  +N ++ GLC 
Sbjct: 378 MEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCM 437

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDN--FFKLLAQMEKLKFSV 376
             + +   +L +  ++  + P+ +T N ++   C     R+    +  + AQ       V
Sbjct: 438 SGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQ------GV 491

Query: 377 AADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALY 433
             D   +   + G  K   +  A  + +E+  K ++ +   YN L+    +  ++ +A  
Sbjct: 492 VPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQ 551

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           LF +MR   L  ++  +++ +  + E G++    E  ++ IE
Sbjct: 552 LFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDEAIE 593



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 104/240 (43%), Gaps = 19/240 (7%)

Query: 145 QKGYKHNFASYNALAYCLSR-NNLFRAADQVPE---------------LMDSQGRIAEML 188
           +KG + N ++YN +   L +  N+ +A   + E               LMD+  +  EM+
Sbjct: 348 RKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMV 407

Query: 189 ---EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
              E+L +M     +P V  +  ++  L     L+   R+ + M +  +  +   Y +++
Sbjct: 408 KARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIM 467

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              C    +    E++R M   G++ D   Y +LI+G      + +A  L K++V+  + 
Sbjct: 468 KQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFN 527

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
                YN++I G  + K+  +A +LFE   ++ L       N  +    E G M+   +L
Sbjct: 528 LTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLEL 587



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 20/159 (12%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           +KG   N A+YN++   YC+ RNN+ R + ++   M +QG +                PD
Sbjct: 453 EKGIMPNAATYNSIMKQYCI-RNNM-RISTEIYRGMCAQGVV----------------PD 494

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
              Y  +I+     RN+     + +EM +        +Y  LI G  K  +++   +LF 
Sbjct: 495 SNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFE 554

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
           EM+  G++    IY + ++    EG +    +L  + ++
Sbjct: 555 EMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDEAIE 593


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 179/366 (48%), Gaps = 6/366 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G  +  +++ +KM +N CKP+V  Y+ +I  L  +R ++  +    EM +  +  +V  Y
Sbjct: 212 GNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTY 271

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +++ G C  G++     LF+EM    ++ +   + +L++GL  EG V +A  + + + +
Sbjct: 272 NSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTE 331

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  YN+++ G C  +  ++A K+FE+ ++   AP   + N L+    +  RMD 
Sbjct: 332 KGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDE 391

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
              LLA+M     ++  D   +   + G  +  R   AL++F+E+   G + ++  Y IL
Sbjct: 392 AKSLLAEMYHK--ALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVIL 449

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G + +AL L   M+   LE N + ++I I+    +G +  A E  +K+     
Sbjct: 450 LDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGT 509

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P +  Y  + KGL K G  D A  L R  + +    P    Y + I    ++ ++   I
Sbjct: 510 RPDIRTYTVMIKGLLKEGLSDEAYDLFRK-MEDDGFLPNSCSYNVMIQGFLQNQDSSTAI 568

Query: 539 EVLNEM 544
            +++EM
Sbjct: 569 RLIDEM 574



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/439 (25%), Positives = 198/439 (45%), Gaps = 22/439 (5%)

Query: 150 HNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAM 209
           HN  S N L  CL R N                 +   + +L KM +    PD   + A+
Sbjct: 126 HNVYSLNILINCLCRLN----------------HVDFSVSVLGKMFKLGIHPDAITFNAL 169

Query: 210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
           I  L  E  +   + ++ EM K   E +V++Y T+I GLCK G      ++F++M++NG 
Sbjct: 170 INGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGC 229

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
             +   Y  +I+ L  +  V  A + L ++V+ G   ++  YNSI+ G C + Q ++A +
Sbjct: 230 KPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATR 289

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG 389
           LF+  V  D+ P+  T   L+    + G +     +   M +    V  D+  +   + G
Sbjct: 290 LFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEK--GVEPDISTYNALMDG 347

Query: 390 K-EERIMM-ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
              +R+M  A  VFE +  KG +     YNIL+    +   + +A  L  +M    L  +
Sbjct: 348 YCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPD 407

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           ++++S  +Q   + G   EA     ++      P++  Y  L  G CK G +D A+ L++
Sbjct: 408 TVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLK 467

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
             +      P    Y + I  +  +G+ E   E+ +++  +G  P+    + +I G+ K 
Sbjct: 468 S-MKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKE 526

Query: 567 GTLEEARKVFTNLRERKLL 585
           G  +EA  +F  + +   L
Sbjct: 527 GLSDEAYDLFRKMEDDGFL 545



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 100/421 (23%), Positives = 195/421 (46%), Gaps = 9/421 (2%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + + L    +M R   +P V  +   +   A ++     + +  +M    V  +V +   
Sbjct: 74  VDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNI 133

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           LI  LC+   V     +  +M + GI  D   +  LI GL  EGK+ +A +L  ++V  G
Sbjct: 134 LINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRG 193

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
           +  ++  Y ++I GLC+      A  +F+   Q+   P+  T + ++    +   +++  
Sbjct: 194 HEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAM 253

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMG 420
           + L++M  ++  +  ++  +   + G     ++  A  +F+E+ G+    +   + IL+ 
Sbjct: 254 EFLSEM--VERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVD 311

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L + G V +A  +F  M    +E +  +++  +  +     + EA +    +I     P
Sbjct: 312 GLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAP 371

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
              +YN L  G CK   +D A  L+ + + + A  P    Y+  +  +C+ G  ++ + +
Sbjct: 372 GAHSYNILINGYCKSRRMDEAKSLLAE-MYHKALNPDTVTYSTLMQGLCQLGRPKEALNL 430

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
             EM   G  PN V    ++ G CKHG L+EA K+  +++E+KL  E N IV+  ILIE 
Sbjct: 431 FKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKL--EPN-IVHYTILIEG 487

Query: 601 M 601
           M
Sbjct: 488 M 488



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 112/253 (44%), Gaps = 23/253 (9%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQG-------------------R 183
           +KG + + ++YNAL   YCL R  L   A +V E+M  +G                   R
Sbjct: 331 EKGVEPDISTYNALMDGYCLQR--LMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRR 388

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + E   +L +M      PD   Y+ +++ L         L +++EM       +++ YV 
Sbjct: 389 MDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVI 448

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+ G CK G +    +L + MKE  +  +   Y +LIEG+   GK+  A +L   L   G
Sbjct: 449 LLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDG 508

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            R D+  Y  +I GL +    D+AY LF     D   P+  + N ++    +        
Sbjct: 509 TRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAI 568

Query: 364 KLLAQMEKLKFSV 376
           +L+ +M   +FSV
Sbjct: 569 RLIDEMVGKRFSV 581



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 93/192 (48%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR  E L + ++M      P++  Y  ++       +LD  L++ + MK+  +E +++ Y
Sbjct: 422 GRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHY 481

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G+   G++    ELF ++  +G   D   Y V+I+GL+ EG   +A DL + + D
Sbjct: 482 TILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMED 541

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G+  +   YN +I G  + +    A +L +  V    + + ST   LL   ++   +  
Sbjct: 542 DGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLDLESQDEIISQ 601

Query: 362 FFKLLAQMEKLK 373
           F +  +Q  K+K
Sbjct: 602 FMRGSSQGRKMK 613


>gi|356509602|ref|XP_003523536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 598

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 114/465 (24%), Positives = 204/465 (43%), Gaps = 23/465 (4%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           + +TP LV EV+   + P L  KF  +   +    H++ +Y+ L   L R+NL   A  V
Sbjct: 34  KHLTPSLVYEVVNRLHIPNLGFKFVEFCRHKLHMSHSYLTYSLLLRSLCRSNLHHTAKVV 93

Query: 175 PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
            + M   G+I                PD      ++   A    LD    +  +++ + V
Sbjct: 94  YDWMRCDGQI----------------PDNRLLGFLVWSYAIVGRLDVSRELLADVQCNNV 137

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
             + + Y  L   L +  +VV    LFRE+             +L+ GL   G++ +A  
Sbjct: 138 GVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILMRGLCRAGEIDEAFR 197

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCC 353
           LL DL   G   D+  YN++I GLCR+ + D+A  L  EV +  + APD  +   ++   
Sbjct: 198 LLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLLKEVCLNGEFAPDVVSYTTIISGY 257

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKG-YS 410
            +  +M+    L  +M  ++   A +   F   +   GK   +  AL ++E++  +G   
Sbjct: 258 CKFSKMEEGNLLFGEM--IRSGTAPNTFTFNALIGGFGKLGDMASALALYEKMLVQGCVP 315

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            V  +  L+     +G+V +A+ ++ KM   N+     +FS+ +     +  + +A +  
Sbjct: 316 DVATFTSLINGYFRLGQVHQAMDMWHKMNDKNIGATLYTFSVLVSGLCNNNRLHKARDIL 375

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
             + E   VP    YN +  G CK G +D A  +V +   N    P +  + + I+  C 
Sbjct: 376 RLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCK-PDKLTFTILIIGHCM 434

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
            G   + I + ++M   GC P+E+  + + S + K G   EA +V
Sbjct: 435 KGRMPEAIGIFHKMLAVGCAPDEITVNNLRSCLLKAGMPGEAARV 479



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/394 (21%), Positives = 170/394 (43%), Gaps = 17/394 (4%)

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + Y  L+  LC+         ++  M+ +G + D  + G L+      G++  + +LL D
Sbjct: 72  LTYSLLLRSLCRSNLHHTAKVVYDWMRCDGQIPDNRLLGFLVWSYAIVGRLDVSRELLAD 131

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +  +    +  +YN +   L R  +   A  LF   ++    P   TVN L+      G 
Sbjct: 132 VQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILMRGLCRAGE 191

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE--LKGKGYSSVPI 414
           +D  F+LL  +    F    D+  +   + G  +   +  A  + +E  L G+    V  
Sbjct: 192 IDEAFRLLNDLR--SFGCLPDVITYNTLIHGLCRINEVDRARSLLKEVCLNGEFAPDVVS 249

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y  ++    +  ++++   LFG+M       N+ +F+  I    + GD+  A   + K++
Sbjct: 250 YTTIISGYCKFSKMEEGNLLFGEMIRSGTAPNTFTFNALIGGFGKLGDMASALALYEKML 309

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
               VP VA +  L  G  ++G++  AM +    + +   G T + +++ +  +C +   
Sbjct: 310 VQGCVPDVATFTSLINGYFRLGQVHQAMDMWHK-MNDKNIGATLYTFSVLVSGLCNNNRL 368

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
            K  ++L  + +    P   I + +I G CK G ++EA K+   +   +   + + + + 
Sbjct: 369 HKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNR--CKPDKLTFT 426

Query: 595 EILIEH-MKKKTADLVLSGLKFFGLESKLKAKGC 627
            ++I H MK +  + +       G+  K+ A GC
Sbjct: 427 ILIIGHCMKGRMPEAI-------GIFHKMLAVGC 453


>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g54980, mitochondrial; Flags: Precursor
 gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
 gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
 gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 851

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 194/400 (48%), Gaps = 9/400 (2%)

Query: 190 ILEKMR-RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           +L +M+ + LC P    YT++I     + N+D  +R+ +EM  D +  +V+A  +LI G 
Sbjct: 290 LLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGH 349

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           CK   +V    LF +M++ G   +   + VLIE     G++ KA +  K +   G    +
Sbjct: 350 CKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSV 409

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
              ++II G  + ++ ++A KLF+ + +  LA  F   N +L    + G+ D   +LL++
Sbjct: 410 FHVHTIIQGWLKGQKHEEALKLFDESFETGLANVF-VCNTILSWLCKQGKTDEATELLSK 468

Query: 369 MEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
           ME     +  ++  +   ++G  +++ + +A  VF  +  KG   +   Y+IL+      
Sbjct: 469 MESR--GIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRN 526

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PSVAA 484
            + + AL +   M   N+EVN + +   I    + G   +A E    +IE  ++  S  +
Sbjct: 527 HDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMS 586

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN +  G  K GE+D+A+    +  GN  S P    Y   +  +C++   ++ +E+ +EM
Sbjct: 587 YNSIIDGFFKEGEMDSAVAAYEEMCGNGIS-PNVITYTSLMNGLCKNNRMDQALEMRDEM 645

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
             +G   +     A+I G CK   +E A  +F+ L E  L
Sbjct: 646 KNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGL 685



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 178/414 (42%), Gaps = 42/414 (10%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG+  E  E+L KM      P+V +Y  ++     ++N+D    V+  + +  ++ +   
Sbjct: 456 QGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYT 515

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G  +        E+   M  + I ++  +Y  +I GL   G+  KA +LL +++
Sbjct: 516 YSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMI 575

Query: 301 DSGYR-ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +          YNSII G  +  + D A   +E    + ++P+  T   L+    +  RM
Sbjct: 576 EEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRM 635

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           D   ++  +M+     V  D+  +   + G  K   +  A  +F EL  +G + S PIYN
Sbjct: 636 DQALEMRDEMKNK--GVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYN 693

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+     +G +  AL L+ KM    L  +  +++  I   ++ G+++ A E + ++  +
Sbjct: 694 SLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAV 753

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
             VP    Y  +  GL K                                     G+  K
Sbjct: 754 GLVPDEIIYTVIVNGLSK------------------------------------KGQFVK 777

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           ++++  EM +    PN +I +A+I+G  + G L+EA ++   + ++ +L +  T
Sbjct: 778 VVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGAT 831



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 142/315 (45%), Gaps = 43/315 (13%)

Query: 182 GRIAEMLEILEKM--RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           G+ ++  E+L  M   + LC     +Y ++I     E  +D+ +  +EEM  + +  +V+
Sbjct: 562 GQTSKARELLANMIEEKRLC-VSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVI 620

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y +L+ GLCK  R+ +  E+  EMK  G+ +D   YG LI+G      +  A  L  +L
Sbjct: 621 TYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSEL 680

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           ++ G      IYNS+I G   +     A  L++  ++D L  D  T   L+         
Sbjct: 681 LEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLI--------- 731

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYN 416
           D                             K+  +++A +++ E++  G   VP   IY 
Sbjct: 732 DGLL--------------------------KDGNLILASELYTEMQAVGL--VPDEIIYT 763

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           +++  L + G+  K + +F +M+  N+  N L ++  I  H   G++ EA   H+++++ 
Sbjct: 764 VIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDK 823

Query: 477 SQVPSVAAYNCLTKG 491
             +P  A ++ L  G
Sbjct: 824 GILPDGATFDILVSG 838



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 114/532 (21%), Positives = 218/532 (40%), Gaps = 58/532 (10%)

Query: 125 VLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCL--SRNNLFRAADQVPELMDSQG 182
           +L   NNP  A +F++WA   +G   +   +  L + L  S     RA+D +   + S  
Sbjct: 79  LLNRRNNPEAALRFYNWARPWRGSFEDGDVFWVLIHILVSSPETYGRASDLLIRYV-STS 137

Query: 183 RIAEMLEILEKMRRNLCKPDVF-----AYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
               M  +L     +  K   F     A+  ++   + +R  D  + +  +M    +E D
Sbjct: 138 NPTPMASVLVSKLVDSAKSFGFEVNSRAFNYLLNAYSKDRQTDHAVDIVNQM----LELD 193

Query: 238 VMAYVTLI----MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           V+ +   +      L +   +    EL+  M   G+  D     +L+   + E K  +A 
Sbjct: 194 VIPFFPYVNRTLSALVQRNSLTEAKELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEAL 253

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL-APDFSTVNPLLVC 352
           ++L   ++ G   D  +Y+  +   C+      A  L     +  L  P   T   +++ 
Sbjct: 254 EVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILA 313

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS 410
             + G MD+  +L  +M  L   ++ ++      + G  K   ++ AL +F++++ +G S
Sbjct: 314 SVKQGNMDDAIRLKDEM--LSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPS 371

Query: 411 SVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ-------------- 455
              + +++L+    + GE++KAL  + KM  L L  +       IQ              
Sbjct: 372 PNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKL 431

Query: 456 --------------CHV------ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
                         C+       + G   EA E  +K+      P+V +YN +  G C+ 
Sbjct: 432 FDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQ 491

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
             +D A ++  + L      P  + Y++ I    R+ + +  +EV+N MT      N V+
Sbjct: 492 KNMDLARIVFSNILEK-GLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVV 550

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
              II+G+CK G   +AR++  N+ E K L   + + Y+ I+    K+   D
Sbjct: 551 YQTIINGLCKVGQTSKARELLANMIEEKRLC-VSCMSYNSIIDGFFKEGEMD 601



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 102/209 (48%), Gaps = 20/209 (9%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           K KG K +  +Y AL   +C  R+N+  A+    EL++                     P
Sbjct: 646 KNKGVKLDIPAYGALIDGFC-KRSNMESASALFSELLEEG-----------------LNP 687

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
               Y ++I       N+ A L ++++M KD +  D+  Y TLI GL K G ++   EL+
Sbjct: 688 SQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELY 747

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            EM+  G++ D  IY V++ GL  +G+  K   + +++  +    ++ IYN++I G  R 
Sbjct: 748 TEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYRE 807

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
              D+A++L +  +   + PD +T + L+
Sbjct: 808 GNLDEAFRLHDEMLDKGILPDGATFDILV 836



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 106/223 (47%), Gaps = 16/223 (7%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G   N  +Y +L   L +NN                R+ + LE+ ++M+    K D+ AY
Sbjct: 614 GISPNVITYTSLMNGLCKNN----------------RMDQALEMRDEMKNKGVKLDIPAY 657

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
            A+I       N+++   ++ E+ ++ +      Y +LI G    G +V   +L+++M +
Sbjct: 658 GALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLK 717

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           +G+  D   Y  LI+GL+ +G +  A +L  ++   G   D  IY  I+ GL +  QF K
Sbjct: 718 DGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVK 777

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
             K+FE   ++++ P+    N ++      G +D  F+L  +M
Sbjct: 778 VVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEM 820



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 50/95 (52%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD   YT ++  L+ +      ++++EEMKK+ V  +V+ Y  +I G  + G +     L
Sbjct: 757 PDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRL 816

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
             EM + GIL D A + +L+ G VG  +  +A  L
Sbjct: 817 HDEMLDKGILPDGATFDILVSGQVGNLQPVRAASL 851


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 191/403 (47%), Gaps = 19/403 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E L +  KM      P + A   ++  L  +   D   +V+ +M       +V+ Y
Sbjct: 140 GLVEEALWVYYKMD---VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTY 196

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G C+ G  ++   LF EM E  I     IY +LI GL GE ++ +A  + + + +
Sbjct: 197 GTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRN 256

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           SG   +L  YN+++ G C++    KA +L++  + D L P+  T   L+    +   M +
Sbjct: 257 SGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVS 316

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYNIL 418
             K L  M    F V  ++  +   + G  K   +  AL +  E+ K +    V  Y+IL
Sbjct: 317 ARKFLIDMA--SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSIL 374

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L  +  +++A  L  +M+      N+++++  I  + + G++ +A E  +++ E   
Sbjct: 375 IKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGI 434

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            P++  ++ L  G CK G+++AAM     M+++  L +V +      Y   I    + G 
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVA------YTALIDGHFKDGN 488

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
            ++   +  EM + G  PN    S +I G+CK G + +A K+F
Sbjct: 489 TKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 117/481 (24%), Positives = 211/481 (43%), Gaps = 61/481 (12%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA-----DQVPELMDSQ-GRIA-EM 187
           A + FH   ++     N   Y+A+ + L+   L+  A     D +  L +S+  RI   +
Sbjct: 53  ALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSV 112

Query: 188 LEILEKMRRNLCKPDVF-----AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
             +L ++  +   P+VF     A++ M  V  A         +W   K D++ A + A  
Sbjct: 113 FNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEA---------LWVYYKMDVLPA-MQACN 162

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++ GL K GR     +++ +M   G   +   YG LI+G   +G   KA  L  ++++ 
Sbjct: 163 MVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEK 222

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
                + IY  +I GLC   +  +A  +F       + P+  T N +         MD +
Sbjct: 223 KIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTM---------MDGY 273

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGA 421
            K+ A ++K                         AL++++E+ G G   +V  + IL+  
Sbjct: 274 CKI-AHVKK-------------------------ALELYQEMLGDGLLPNVVTFGILIDG 307

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L +  E+  A      M    +  N   ++  I  + ++G++ EA   H++I +   +P 
Sbjct: 308 LCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPD 367

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V  Y+ L KGLC +  ++ A  L+++ +      P    Y   I   C+ G  EK IEV 
Sbjct: 368 VFTYSILIKGLCGVDRMEEADGLLQE-MKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVC 426

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
           ++MT++G  PN +  S +I G CK G +E A  ++T +  + LL   + + Y  ++  H 
Sbjct: 427 SQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLL--PDVVAYTALIDGHF 484

Query: 602 K 602
           K
Sbjct: 485 K 485



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 161/350 (46%), Gaps = 1/350 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG   +   + ++M      P V  YT +IR L  E  +     ++  M+   +  ++  
Sbjct: 206 QGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYT 265

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T++ G CK   V +  EL++EM  +G+L +   +G+LI+GL    ++  A   L D+ 
Sbjct: 266 YNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMA 325

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   ++ +YN +I G C+     +A  L     + ++ PD  T + L+     + RM+
Sbjct: 326 SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRME 385

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
               LL +M+K  F   A           KE  +  A++V  ++  KG   ++  ++ L+
Sbjct: 386 EADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               + G+++ A+ L+ +M    L  + ++++  I  H + G+  EA   H ++ E    
Sbjct: 446 DGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLH 505

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
           P+V   +CL  GLCK G I  A+ L     G   +G    +   ++  +C
Sbjct: 506 PNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLYQMC 555


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 107/465 (23%), Positives = 199/465 (42%), Gaps = 24/465 (5%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           +G K NF ++N L  C  +                 G I     +L K+ +   +PD   
Sbjct: 99  RGIKPNFVNFNILINCFCQ----------------LGLIPFAFSVLAKILKMGYEPDTIT 142

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
               I+    +  +   L   +++       D ++Y TLI GLCK G      EL R + 
Sbjct: 143 LNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVD 202

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
              + +D  +Y  +I+ +  +  V  A DL  ++V     +++  Y+++I G C V +  
Sbjct: 203 GKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLK 262

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
            A  LF     +++ PD  T N L+    + GR+      LA M  +K  +  D+  +  
Sbjct: 263 DAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMM--MKQGIKPDIVTYNS 320

Query: 386 FLVGK--EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            + G      + MA  +   +  +G + +V  YNI++    +I  V +A+ LF +M    
Sbjct: 321 LMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQ 380

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           +  N ++++  I    +SG I  A E  + + +  Q P +  Y+ +   LCK   +D A+
Sbjct: 381 IFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAI 440

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            L+   L +    P  + Y + I  +C+ G  E    +  ++  +G        + +I G
Sbjct: 441 ALLIK-LKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQG 499

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
            C HG  +EA  + + +++   + +A  I Y+ I+     K   D
Sbjct: 500 FCSHGLFDEALSLLSKMKDNSCIPDA--ITYEIIICSLFDKDEND 542



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 162/369 (43%), Gaps = 4/369 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G     LE+L ++   L + DV  Y+ +I  +  ++N++    ++ EM    + ++++ Y
Sbjct: 189 GETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTY 248

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G C  G++     LF +M    I  D   + +L++    EG+V +A + L  ++ 
Sbjct: 249 SALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMK 308

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + D+  YNS++ G C V + + A  +        +     + N ++    ++  +D 
Sbjct: 309 QGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQ 368

Query: 362 FFKLLAQM-EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
             KL  +M  K  F          + L  K  RI  AL++ + +  +G    +  Y+ ++
Sbjct: 369 AMKLFKEMHHKQIFPNVITYNSLIDGLC-KSGRISYALELIDLMHDRGQQPDIITYSSIL 427

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            AL +   V KA+ L  K++   +  N  +++I I    + G + +A      ++     
Sbjct: 428 DALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYN 487

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
            +V  Y  + +G C  G  D A+ L+     N +  P    Y + I  +    E +K  +
Sbjct: 488 LTVNTYTVMIQGFCSHGLFDEALSLLSKMKDN-SCIPDAITYEIIICSLFDKDENDKAEK 546

Query: 540 VLNEMTQEG 548
           +L EM   G
Sbjct: 547 LLREMITRG 555



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 91/436 (20%), Positives = 188/436 (43%), Gaps = 46/436 (10%)

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           +R+N   PD+  +  ++  L   ++    L ++++M+   ++ + + +  LI   C+ G 
Sbjct: 62  LRQNPTPPDM-EFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCFCQLGL 120

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           +     +  ++ + G   D       I+G   +G++ +A +    LV  G+  D   Y +
Sbjct: 121 IPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGT 180

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           +I GLC+V +   A +L                           R+D     L Q++ + 
Sbjct: 181 LINGLCKVGETRAALELLR-------------------------RVDG---KLVQLDVVM 212

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS-VPIYNILMGALLEIGEVKKAL 432
           +S   D        + K++ +  A D++ E+  +  SS +  Y+ L+     +G++K A+
Sbjct: 213 YSTIID-------SMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAI 265

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            LF KM   N+  +  +F+I +    + G + EA      +++    P +  YN L  G 
Sbjct: 266 GLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGY 325

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           C + E++ A  ++ + + +     T   Y + I   C+    ++ +++  EM  +   PN
Sbjct: 326 CLVNEVNMAKSIL-NTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPN 384

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSG 612
            +  +++I G+CK G +  A ++   + +R    + + I Y  IL    K    D     
Sbjct: 385 VITYNSLIDGLCKSGRISYALELIDLMHDRG--QQPDIITYSSILDALCKNHLVD----- 437

Query: 613 LKFFGLESKLKAKGCK 628
            K   L  KLK +G +
Sbjct: 438 -KAIALLIKLKDQGIR 452



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 174/431 (40%), Gaps = 61/431 (14%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E    L  M +   KPD+  Y +++        ++    +   M    V A V +
Sbjct: 293 EGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRS 352

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G CK   V +  +LF+EM    I  +   Y  LI+GL   G++  A +L+  + 
Sbjct: 353 YNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMH 412

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D G + D+  Y+SI+  LC+    DKA  L        + P+  T   L+    + GR++
Sbjct: 413 DRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLE 472

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
           +                                   A ++FE+L  KGY+ +V  Y +++
Sbjct: 473 D-----------------------------------ARNIFEDLLVKGYNLTVNTYTVMI 497

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
                 G   +AL L  KM+  +   +++++ I I C +   D  +  E   K++    +
Sbjct: 498 QGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIII-CSLFDKDENDKAE---KLLR-EMI 552

Query: 480 PSVAAYNCLTKGLCKIGEIDA-AMMLVRDCL--------GNVASGPTEFKYALTILHVCR 530
                Y+ L  G   +  + A A  L  D L        GN A    E  Y   +L   +
Sbjct: 553 TRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTSSQESGNWAKLLLERIYCDCVL--TK 610

Query: 531 SGEAEK-------IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
           S   +K       II    + +++G   +    + +I G C HG  +E+  + + +    
Sbjct: 611 SNMRDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMIQGFCSHGLFDESLALLSKMEVNG 670

Query: 584 LLTEANTIVYD 594
            + +A  + YD
Sbjct: 671 CIPDA--VTYD 679


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 124/508 (24%), Positives = 210/508 (41%), Gaps = 64/508 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAA-------------------DQVPELMDSQGRI 184
            Q G +    +Y+AL   LSR  +  A                    + V   +   G +
Sbjct: 172 SQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNV 231

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           A+   I++K+  +   PD F YT+MI     + +LD+ L+V+ +M K+  E + + Y TL
Sbjct: 232 ADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTL 291

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLC  GRV    +L REM  +GIL         I  L   G    A  L  D+ + G 
Sbjct: 292 INGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGC 351

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  Y ++I GLC       A  LF    +D + P+  T N L+    E  R+   F 
Sbjct: 352 EPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 411

Query: 365 LLAQMEKLKFSVAADLEKFFEF-----LVGKEERIMMALDVFEELKGKGYSS-VPIYNIL 418
           +L  M   +   + ++  + E      ++G  ++ M+   V   +  +G+S+ +  YN +
Sbjct: 412 VLNLMG--RNGCSPNIVTYNEMIKGYCILGDPKKAML---VMNNMLQRGHSANLVTYNTI 466

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G    AL +   MR    + +  S++  I    +   +  A    N++++   
Sbjct: 467 IKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGL 526

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRD-----CLGNVA---------------SG--- 515
            P+   Y  L  G CK  ++D A  L+       C  NV                SG   
Sbjct: 527 CPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEE 586

Query: 516 -----------PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
                      P    Y   I  +C++G     +E+ N+M ++GC PN +  S++I  + 
Sbjct: 587 LCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALG 646

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTIV 592
           + G +EEA  +F  L    L+ +  T V
Sbjct: 647 QEGKVEEAENLFAELERHGLIPDEITYV 674



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 181/404 (44%), Gaps = 6/404 (1%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+  +A  +  L+ + ++  +  +FAY+A++  L+      A +  +  M  + V+ +++
Sbjct: 157 SKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLL 216

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I  LCK G V     + +++ E+ +  D   Y  +I G   +  +  A  +   +
Sbjct: 217 IYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQM 276

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   +   Y+++I GLC   + ++A+ L    +   + P   T    ++   +MG  
Sbjct: 277 AKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCY 336

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYN 416
           ++ ++L   M+        ++  +   + G      + +A+ +F  +   G + +   YN
Sbjct: 337 EDAWRLFVDMKNK--GCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYN 394

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  L+E   +K A  +   M       N ++++  I+ +   GD  +A    N +++ 
Sbjct: 395 ALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQR 454

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
               ++  YN + KG C  G   +A+ ++ D + +    P E+ Y   I   C+  + E 
Sbjct: 455 GHSANLVTYNTIIKGYCDSGNTTSALRIL-DLMRDGGCKPDEWSYTELICGFCKISKMES 513

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
              + NEM  +G  PNEV  +A+I G CK   L+ A  +  +++
Sbjct: 514 AFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMK 557



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 166/383 (43%), Gaps = 6/383 (1%)

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M+   C+P+V+ YTA+I  L     L   + ++  M +D V  + + Y  LI  L +  R
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 405

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           +     +   M  NG   +   Y  +I+G    G   KA  ++ +++  G+ A+L  YN+
Sbjct: 406 IKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 465

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           II G C       A ++ ++       PD  +   L+    ++ +M++ F L  +M  + 
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEM--VD 523

Query: 374 FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKK 430
             +  +   +   + G  K+E++  A  + E +K  G   +V  YN+L+  L +      
Sbjct: 524 DGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSG 583

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A  L   M    +  N ++++  I    ++G    A E  NK+IE   +P++  Y+ L +
Sbjct: 584 AEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIR 643

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
            L + G+++ A  L  + L      P E  Y   I     SG+ E     L  M + GC 
Sbjct: 644 ALGQEGKVEEAENLFAE-LERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQ 702

Query: 551 PNEVICSAIISGMCKHGTLEEAR 573
           P       +I G+     L + R
Sbjct: 703 PTLWTYGVLIKGLKNEYLLADQR 725



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 112/530 (21%), Positives = 217/530 (40%), Gaps = 86/530 (16%)

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ 181
           V+ +LKV      A   FH   +  G   N  +YNAL   L  N   + A  V  LM   
Sbjct: 367 VSGILKV------AIGLFHRMSRD-GVFPNTVTYNALINILVENRRIKYAFVVLNLMGRN 419

Query: 182 G------RIAEMLE-------------ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
           G         EM++             ++  M +     ++  Y  +I+      N  + 
Sbjct: 420 GCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSA 479

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
           LR+ + M+    + D  +Y  LI G CK  ++     LF EM ++G+  +   Y  LI+G
Sbjct: 480 LRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDG 539

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
              + K+  A  LL+ +  SG R ++  YN +I GL +   F  A +L +V +++ + P+
Sbjct: 540 YCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPN 599

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
             T   ++    + G                                      +AL++F 
Sbjct: 600 VVTYTAMIDGLCKNGSTS-----------------------------------LALEMFN 624

Query: 403 ELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           ++  +G   ++  Y+ L+ AL + G+V++A  LF ++    L  + +++   I+ ++ SG
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 684

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGL-CKIGEIDAAMMLVRDCLGNVASGPTEFK 520
            +  A     ++I+    P++  Y  L KGL  +    D  +  + D + N +     F 
Sbjct: 685 KVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCS-----FG 739

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV-ICSAIISGMCKHGTLEEARKVFTNL 579
           Y  T          +  + V++    E  P   V + +A++S +   G   EA ++  ++
Sbjct: 740 YQTT---------DQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSM 790

Query: 580 RERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKL 629
             + L  +     Y+ +L   ++ +  DL +      G+   +  +GC++
Sbjct: 791 ISQGLCPDQE--AYNSLLCSLLRVRNVDLAM------GVFKHMSTQGCEV 832



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 8/136 (5%)

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           C   E  A  M   D L         F Y+  ++H+ R G    +++  + M  EG  PN
Sbjct: 155 CHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPN 214

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSG 612
            +I +A+I+ +CK G + +A  +   + E ++    +T  Y  +++ H +K   D   S 
Sbjct: 215 LLIYNAVINALCKDGNVADAETIMKKVFESEM--SPDTFTYTSMILGHCRKHDLD---SA 269

Query: 613 LKFFGLESKLKAKGCK 628
           L+ F   +++  +GC+
Sbjct: 270 LQVF---NQMAKEGCE 282



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 2/136 (1%)

Query: 178 MDSQGRIAEMLEILEKM-RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           + + GR  E  E+L  M  + LC PD  AY +++  L   RN+D  + V++ M     E 
Sbjct: 774 LSTAGRWFEANELLGSMISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 832

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
            +  Y  LI  LC+  R       F  M       D  +  VLI+GL+ +G      + L
Sbjct: 833 HLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFL 892

Query: 297 KDLVDSGYRADLGIYN 312
             +    Y     IY 
Sbjct: 893 HIMETRRYMPSFHIYT 908



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 24/186 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIR-----VLAAERNLDA-------CLRVWEE 228
            G++      L +M +  C+P ++ Y  +I+      L A++ L A       C   ++ 
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 742

Query: 229 MKKD--------LVEAD----VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
             +D        L E D    V     L+  L   GR    +EL   M   G+  D+  Y
Sbjct: 743 TDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAY 802

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
             L+  L+    V  A  + K +   G    L  Y  +I  LC++ +  +A   FE  + 
Sbjct: 803 NSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLM 862

Query: 337 DDLAPD 342
               PD
Sbjct: 863 RTWNPD 868


>gi|413934035|gb|AFW68586.1| hypothetical protein ZEAMMB73_127077 [Zea mays]
          Length = 800

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 150/635 (23%), Positives = 249/635 (39%), Gaps = 131/635 (20%)

Query: 72  PPSDPKTFQ----LQRHLSPIA---RFITDAF----RKNQFQWG---PQVVTELSKLRRV 117
           PPS P  F     L R L+P +     + DA     R   F +    P++ + L   R V
Sbjct: 51  PPSLPSLFPCLSLLSRRLTPHSVADALLCDALPPASRIRLFLFSALTPRLRSPLLHSRAV 110

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177
            P L+A          +A        +  G +   A++ AL +  +              
Sbjct: 111 VPILLATDADAAMYDAIAD------AQAAGLQPPTAAFEALIFAHA-------------- 150

Query: 178 MDSQGRIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERN-LDACLRVWEEMKKDLVE 235
             S GR  E +E   +M     C+P  F Y A++RVL A    +   L ++  M      
Sbjct: 151 --SAGRHHEAVEAFSRMEGEFGCRPTTFVYNAVLRVLVASGGAVPLALALYNRMVAAGCL 208

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            +   Y  LI GLCK G  V   +LF EM   GI  +   + +L+  +   G++ +A +L
Sbjct: 209 PNRATYNVLIHGLCKRGTPVDALKLFDEMISRGITPNVKTHTILLSSMCNAGQLKEAENL 268

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK------------------------LF 331
           L  + D G   D   YN+ + GLC+  + D+A +                        LF
Sbjct: 269 LHSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRHTGTFVLGLKGYSCLIDGLF 328

Query: 332 -------------EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS--- 375
                        EV  Q D++PD      ++  CAE GR ++ F    +M++  F+   
Sbjct: 329 LAGRYEEGFQCYMEVLEQADVSPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEKGFTPDT 388

Query: 376 ------------------------------VAADLEKFFEFLVG--KEERIMMALDVFEE 403
                                         V  D+  +   ++G  KE+ +  A+ VF+ 
Sbjct: 389 FCYNTLLKALCDAGDLDGARSLMSEMVRNNVVLDIHTYTTMIIGLCKEQLVDEAMQVFDG 448

Query: 404 LKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMR-------------GLNLEVNSLS 449
           +   G + SV  YN+L+  L     +++A  LF KM              G N   +S +
Sbjct: 449 MVEVGCHPSVMTYNVLIDGLYRAHRLEEARMLFYKMEVGNNPSLFLRLTLGANQVRDSET 508

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
               ++   +SG +L+A +    II+   VP V  YN L  GLCK+  +D A+ L R+  
Sbjct: 509 LQKLVESMCQSGQVLKAYKLLRGIIDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFREL- 567

Query: 510 GNVASGP-TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
             V   P  E  Y   I  + R+      + +  ++   G  P+  I ++++  +C+   
Sbjct: 568 -QVKGFPLDEITYGTLIDSLLRAHRYNDALTLFQDILHSGGTPSMPIYNSMMRSLCRMQK 626

Query: 569 LEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           L +A  ++ +   RK     N +  DE++    KK
Sbjct: 627 LSQAINLWFDHLPRKY----NLLAQDEVISSARKK 657



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/417 (22%), Positives = 180/417 (43%), Gaps = 18/417 (4%)

Query: 182 GRIAEMLEILEKMRRN-LCKPDVFAYTAMIRVLAAERNLDACLRVWEE-MKKDLVEADVM 239
           GR+ E +E LE +R        +  Y+ +I  L      +   + + E +++  V  D++
Sbjct: 295 GRVDEAIERLEALRHTGTFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADVSPDIV 354

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I G  + GR       F EMKE G   D   Y  L++ L   G +  A  L+ ++
Sbjct: 355 LYTIMIRGCAEAGRTNDAFAFFDEMKEKGFTPDTFCYNTLLKALCDAGDLDGARSLMSEM 414

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V +    D+  Y ++I GLC+ +  D+A ++F+  V+    P   T N L+       R+
Sbjct: 415 VRNNVVLDIHTYTTMIIGLCKEQLVDEAMQVFDGMVEVGCHPSVMTYNVLIDGLYRAHRL 474

Query: 360 DNFFKLLAQMEK-------LKFSVAAD-------LEKFFEFLVGKEERIMMALDVFEELK 405
           +    L  +ME        L+ ++ A+       L+K  E +  +  +++ A  +   + 
Sbjct: 475 EEARMLFYKMEVGNNPSLFLRLTLGANQVRDSETLQKLVESMC-QSGQVLKAYKLLRGII 533

Query: 406 GKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
             G    V  YN L+  L ++  +  AL LF +++     ++ +++   I   + +    
Sbjct: 534 DSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFPLDEITYGTLIDSLLRAHRYN 593

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
           +A      I+     PS+  YN + + LC++ ++  A+ L  D L    +   + +   +
Sbjct: 594 DALTLFQDILHSGGTPSMPIYNSMMRSLCRMQKLSQAINLWFDHLPRKYNLLAQDEVISS 653

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
                  G   + +  L ++ QE    N    +  + G+ + G +E+A K+F  L E
Sbjct: 654 ARKKFEEGCLHEAVRELIKIDQEYGSVNSCPYTIWLIGLIQAGRIEDALKIFHILEE 710



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/213 (20%), Positives = 92/213 (43%), Gaps = 4/213 (1%)

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           AL +F+E+  +G + +V  + IL+ ++   G++K+A  L   M       + ++++  + 
Sbjct: 230 ALKLFDEMISRGITPNVKTHTILLSSMCNAGQLKEAENLLHSMEDKGCPPDEVTYNAFLS 289

Query: 456 CHVESGDILEACECHNKIIEMSQ-VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
              ++G + EA E    +      V  +  Y+CL  GL   G  +       + L     
Sbjct: 290 GLCKAGRVDEAIERLEALRHTGTFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADV 349

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P    Y + I     +G         +EM ++G  P+    + ++  +C  G L+ AR 
Sbjct: 350 SPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEKGFTPDTFCYNTLLKALCDAGDLDGARS 409

Query: 575 VFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           + + +    ++ + +T  Y  ++I   K++  D
Sbjct: 410 LMSEMVRNNVVLDIHT--YTTMIIGLCKEQLVD 440


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 199/437 (45%), Gaps = 38/437 (8%)

Query: 181 QGRIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           QG + E + +L  +  +  C+PDV +Y A++R L   R       + EEM       +++
Sbjct: 194 QGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIV 253

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            + TLI  LC+ G   R HE+  +M E+G   D  +Y  +I+G+  E ++  A  +L  +
Sbjct: 254 TFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRM 313

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   ++  YN+++ GLC   ++++A  L       D   D  T N L+    + G +
Sbjct: 314 PSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLV 373

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
           D   ++L QM                                  L+      V  Y  ++
Sbjct: 374 DRVIEVLEQM----------------------------------LEHGCMPDVITYTTVI 399

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               + G + +A+ L   M       N++S++I ++    +   ++A E  +++I+    
Sbjct: 400 NGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCP 459

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+   +N L   LCK G ++ A+ L++  L N  S P    Y+  I  + ++G  ++ +E
Sbjct: 460 PNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCS-PDLISYSTVIDGLGKAGNTDEALE 518

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           +LN M ++G  PN +I S+I S +   G + +  ++F N+++  + ++A  ++Y+ ++  
Sbjct: 519 LLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDA--VLYNAVISS 576

Query: 600 HMKKKTADLVLSGLKFF 616
             K+   D  +  L + 
Sbjct: 577 LCKRGETDRAIEFLAYM 593



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 179/404 (44%), Gaps = 42/404 (10%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++GRIA+ L +L+ M R  C P    Y                                 
Sbjct: 123 ARGRIADALAVLDDMARRGCAPTPPMY--------------------------------- 149

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            +VTL    C+         + R++   G  +D     ++++ +  +G V +A  LL+DL
Sbjct: 150 -HVTL-EAACRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDL 207

Query: 300 VDS-GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           + S G   D+  YN+++ GLC  +++     L E  V     P+  T + L+      G 
Sbjct: 208 LPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGL 267

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIY 415
            +   ++ AQM   +   A D+  +   + G  KEER+ +A  +   +   G S +V  Y
Sbjct: 268 FERVHEVHAQMA--EHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCY 325

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+  L      ++A  L  +M   +  ++ ++F+I +    ++G +    E   +++E
Sbjct: 326 NTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLE 385

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
              +P V  Y  +  G CK G ID A+ML+R  +      P    Y + +  +C +    
Sbjct: 386 HGCMPDVITYTTVINGFCKEGLIDEAVMLLRS-MAACGCRPNTVSYTIVLKGLCSAERWV 444

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
              E++++M Q+GCPPN V  + +I+ +CK G +E+A ++   +
Sbjct: 445 DAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 488



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 167/408 (40%), Gaps = 28/408 (6%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G   N  +++ L   L RN LF    +V   M   G                C PDV  Y
Sbjct: 247 GCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHG----------------CAPDVRMY 290

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +I  +  E  L+    +   M    +  +V+ Y TL+ GLC   R      L  EM +
Sbjct: 291 ATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFD 350

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
               +D   + +L++ L   G V +  ++L+ +++ G   D+  Y ++I G C+    D+
Sbjct: 351 KDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDE 410

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQM-EKLKFSVAADLEKF 383
           A  L          P+  +   +L  +C AE  R  +  +L++QM ++            
Sbjct: 411 AVMLLRSMAACGCRPNTVSYTIVLKGLCSAE--RWVDAEELMSQMIQQGCPPNPVTFNTL 468

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLN 442
             FL  K+  +  A+++ +++   G S   I Y+ ++  L + G   +AL L   M    
Sbjct: 469 INFLC-KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKG 527

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           +  N++ +S         G I +  +    I + +       YN +   LCK GE D A+
Sbjct: 528 MSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAI 587

Query: 503 MLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
             +      V+SG  P E  Y + I  +   G  ++  E+L E+  +G
Sbjct: 588 EFLAY---MVSSGCVPNESTYTILIRGLASEGFVKEAQEILTELCSKG 632



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 135/324 (41%), Gaps = 8/324 (2%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           +G  +   SY      +  N L +         +++G +AEM +         C  D   
Sbjct: 307 RGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFD-------KDCPLDDVT 359

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           +  ++  L     +D  + V E+M +     DV+ Y T+I G CK G +     L R M 
Sbjct: 360 FNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMA 419

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
             G   +   Y ++++GL    +   A +L+  ++  G   +   +N++I  LC+    +
Sbjct: 420 ACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVE 479

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +A +L +  + +  +PD  + + ++    + G  D   +LL  M K   S    +     
Sbjct: 480 QAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIA 539

Query: 386 FLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
             +  E RI   + +FE ++     S   +YN ++ +L + GE  +A+     M      
Sbjct: 540 SALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCV 599

Query: 445 VNSLSFSIAIQCHVESGDILEACE 468
            N  +++I I+     G + EA E
Sbjct: 600 PNESTYTILIRGLASEGFVKEAQE 623



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 121/293 (41%), Gaps = 51/293 (17%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           YN+++ G CR  Q   A +L        +AP+  T  PL+      GR+ +   +L  M 
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAASV---PVAPNAYTYFPLVRALCARGRIADALAVLDDMA 138

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVK 429
           +   +    +         +      A+ V  +L G+G +  V   N+++ A+ + G V 
Sbjct: 139 RRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVD 198

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
           +A+ L                           D+L +  C          P V +YN + 
Sbjct: 199 EAVRLL-------------------------RDLLPSFGCE---------PDVVSYNAVL 224

Query: 490 KGLC---KIGEIDAAM--MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           +GLC   + G +   M  M+   C  N+ +      ++  I H+CR+G  E++ EV  +M
Sbjct: 225 RGLCMARRWGHVQDLMEEMVAAGCPPNIVT------FSTLIGHLCRNGLFERVHEVHAQM 278

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            + GC P+  + + II G+CK   LE AR +   +    L    N + Y+ +L
Sbjct: 279 AEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGL--SPNVVCYNTLL 329



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 19/178 (10%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQV----------PELMD---------SQGRIA 185
           Q+G   N  ++N L   L +  L   A ++          P+L+            G   
Sbjct: 455 QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTD 514

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E LE+L  M +    P+   Y+++   L+ E  ++  ++++E ++   V +D + Y  +I
Sbjct: 515 EALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVI 574

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
             LCK G   R  E    M  +G + + + Y +LI GL  EG V +A ++L +L   G
Sbjct: 575 SSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTELCSKG 632


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 183/422 (43%), Gaps = 9/422 (2%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD + YT +IRVL     +   L + ++M +   + +V+ Y  L+  +CK     +   +
Sbjct: 140 PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAV 199

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             EM+  G   +   Y V+I G+  EG+V  A DLL  L   G + D   Y +++ GLC 
Sbjct: 200 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCA 259

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            K++D   +LF   ++ +  P+  T + L+      G ++   ++L QM + + +    L
Sbjct: 260 SKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTL 319

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMR 439
                  + K+ R+  A      +   G +   I Y  ++  L        A  L  +M 
Sbjct: 320 CNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMV 379

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
             N   N ++F+  I    + G I +A     ++ E      V  YN L  G C  G ID
Sbjct: 380 RNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHID 439

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           +A+ L R    ++   P    Y   +  +C +   +   E++ EM    CPPN V  + +
Sbjct: 440 SALELFR----SMPCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVL 495

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLE 619
           ++  C+ G L+EA ++   + E       N I Y+ +     K  +++  L  L   GL 
Sbjct: 496 VNFFCQKGFLDEAIELVEQMMEHG--CTPNLITYNTLFDGITKDCSSEDALELLH--GLV 551

Query: 620 SK 621
           SK
Sbjct: 552 SK 553



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 120/555 (21%), Positives = 233/555 (41%), Gaps = 39/555 (7%)

Query: 48  PHQSPPFNVQKWDPHYLPNQKTQSPPS-----DPKTFQLQR-----HLSPIARFITDAFR 97
           PH + P       PH+L       P S     +P + +L+R      L+  AR +  +  
Sbjct: 12  PHATFP----NPKPHHLAAAAATRPESPNVAPNPASARLRRLIAREDLAGAARLVELSAS 67

Query: 98  KNQFQWGPQVVTELSK--LRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGY---KHNF 152
           ++       + T+L +   RR      A VL+           F +     GY    H  
Sbjct: 68  RDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLD 127

Query: 153 ASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRV 212
           A+   +       + +     +  L D +GR+A+ L +L+ M R  C+P+V  YT ++  
Sbjct: 128 AARRLIGSMPVAPDAYTYTPLIRVLCD-RGRVADALSLLDDMLRRGCQPNVVTYTVLLEA 186

Query: 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           +      +  + V +EM+      +++ Y  +I G+C+ GRV    +L   +   G   D
Sbjct: 187 MCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPD 246

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              Y  L++GL    +     +L  ++++     +   ++ +I   CR    ++A ++ +
Sbjct: 247 TVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQ 306

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--K 390
              + + A + +  N ++    + GR+D+ FK L  M    +    D   +   L G  +
Sbjct: 307 QMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMG--SYGCNPDTISYTTVLKGLCR 364

Query: 391 EERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
            ER   A ++ +E+ +     +   +N  +  L + G +++A+ L  +M+     V  ++
Sbjct: 365 AERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVT 424

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----ML 504
           ++  +      G I  A E       M   P+   Y  L  GLC    +DAA      ML
Sbjct: 425 YNALVNGFCVQGHIDSALELFRS---MPCKPNTITYTTLLTGLCNAERLDAAAELVAEML 481

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
            RDC  NV +      + + +   C+ G  ++ IE++ +M + GC PN +  + +  G+ 
Sbjct: 482 HRDCPPNVVT------FNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGIT 535

Query: 565 KHGTLEEARKVFTNL 579
           K  + E+A ++   L
Sbjct: 536 KDCSSEDALELLHGL 550



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/496 (20%), Positives = 209/496 (42%), Gaps = 55/496 (11%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLF----------RAADQVPEL---------MDSQGRIA 185
           ++G + N  +Y  L   + +N+ F          RA    P +         M  +GR+ 
Sbjct: 170 RRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 229

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           +  ++L ++    C+PD  +YT +++ L A +  D    ++ EM +     + + +  LI
Sbjct: 230 DARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLI 289

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              C+GG V R  ++ ++M E+    +  +  ++I  +  +G+V  A   L ++   G  
Sbjct: 290 RFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCN 349

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D   Y +++ GLCR ++++ A +L +  V+++  P+  T N  +    + G ++    L
Sbjct: 350 PDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIML 409

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEI 425
           + QM++   +V              +  I  AL++F  +  K   +   Y  L+  L   
Sbjct: 410 IEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCK--PNTITYTTLLTGLCNA 467

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
             +  A  L  +M   +   N ++F++ +    + G + EA E   +++E    P++  Y
Sbjct: 468 ERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITY 527

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLG----------------------------------N 511
           N L  G+ K    + A+ L+   +                                   +
Sbjct: 528 NTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQD 587

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
           +   P    Y   +L +C+  E +  I+ L  M   GC PNE     +I G+ + G L+E
Sbjct: 588 IGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKE 647

Query: 572 ARKVFTNLRERKLLTE 587
           A+ + + L  R ++++
Sbjct: 648 AQDLLSMLCSRGVVSK 663



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 172/400 (43%), Gaps = 14/400 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PDV+  T +IR L          RV    +      DV AY TL+ G C+ G +     L
Sbjct: 73  PDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRL 132

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              M    +  D   Y  LI  L   G+V  A  LL D++  G + ++  Y  ++  +C+
Sbjct: 133 IGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCK 189

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
              F++A  + +        P+  T N ++      GR+D+   LL ++    +    D 
Sbjct: 190 NSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRL--FSYGCQPDT 247

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGK 437
             +   L G    +R     ++F E+  K      + +++L+      G V++A+ +  +
Sbjct: 248 VSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQ 307

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M       N+   +I I    + G + +A +  N +      P   +Y  + KGLC+   
Sbjct: 308 MTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAER 367

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
            + A  L+++ + N    P E  +   I  +C+ G  E+ I ++ +M + GC    V  +
Sbjct: 368 WNDAKELLKEMVRNNCP-PNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYN 426

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           A+++G C  G ++ A ++F     R +  + NTI Y  +L
Sbjct: 427 ALVNGFCVQGHIDSALELF-----RSMPCKPNTITYTTLL 461


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 119/496 (23%), Positives = 222/496 (44%), Gaps = 36/496 (7%)

Query: 131 NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD----------- 179
           N  +A KFFH   K +G K +  SY ++ + L +      A+++   M+           
Sbjct: 130 NVDMACKFFHEL-KAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAY 188

Query: 180 --------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK 231
                   S GR  +  ++LE++R   C P V ++ +++  L  +R +D  L ++E MKK
Sbjct: 189 NTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK 248

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
           D  E +   Y  +I  LC GGRV   + +  EM+   +  +     ++++ L    K+ +
Sbjct: 249 D-AEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEE 307

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A  + +     G   D   Y S+I GL +  Q D+AY+LFE  +      +      L+ 
Sbjct: 308 AYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 367

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGY 409
                GR ++  K+  ++  ++     DL     ++  V K   +     +FE+++  G+
Sbjct: 368 NFFIHGRKEDGHKVFKEL--IRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGF 425

Query: 410 -SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
              V  Y+IL+  L + G+ ++   +F  M+     +++ +++  +    +SG + +A E
Sbjct: 426 LPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYE 485

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK---YALTI 525
              ++ E    P+VA Y  +  GL KI  +D A ML  +      S   E     Y+  I
Sbjct: 486 ILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEE----AKSKGIELNVVLYSSLI 541

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
               + G  ++   +L EM ++G  PN    ++++  + K   + EA   F +++E K  
Sbjct: 542 DGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMK-- 599

Query: 586 TEANTIVYDEILIEHM 601
              NT  Y  ILI  +
Sbjct: 600 CPPNTYTYS-ILINGL 614



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 188/403 (46%), Gaps = 3/403 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++A+ L ++++++ +  +PD+  Y   I       N+D   + + E+K   ++ D ++
Sbjct: 93  EGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVS 152

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y ++I  LCK GR+    ELF +M+    +     Y  +I G    G+   A  LL+ L 
Sbjct: 153 YTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLR 212

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G    +  +NSI+  L + ++ D+A  LFEV ++ D  P+ ST N ++      GR++
Sbjct: 213 ERGCIPSVVSFNSILTCLGKKRKVDEALSLFEV-MKKDAEPNSSTYNIIIDMLCLGGRVE 271

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
             +++L +ME                 + K  ++  A  +FE    +G +     Y  L+
Sbjct: 272 EAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLI 331

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L + G+V +A  LF KM       N + ++  I+     G   +  +   ++I     
Sbjct: 332 DGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCK 391

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P +   N     + K GE++   M+  D + +    P    Y++ I  + ++G+A +   
Sbjct: 392 PDLTLLNTYMDCVFKAGEVEKGRMIFED-IRSYGFLPDVRSYSILIHGLTKAGQARETSN 450

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           + + M Q+G   +    +A++ G CK G + +A ++   ++E+
Sbjct: 451 IFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEK 493



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 190/435 (43%), Gaps = 9/435 (2%)

Query: 171 ADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK 230
           AD    L+ ++ R+ + +  +  MRR   +P   AYT +I  LA  R  +  L +  +M+
Sbjct: 14  ADLAAALVRAR-RLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQ 72

Query: 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
           +   E  V  + TL+  L + G+V     L  E+K + +  D  +Y V I+     G V 
Sbjct: 73  EVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVD 132

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            AC    +L   G + D   Y S+I  LC+  +  +A +LF     +   P     N ++
Sbjct: 133 MACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMI 192

Query: 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKG 408
           +     GR ++ +KLL ++ +        +  F   L  +GK+ ++  AL +FE +K   
Sbjct: 193 MGYGSAGRFEDAYKLLERLRER--GCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA 250

Query: 409 YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
             +   YNI++  L   G V++A  +  +M   +L  N L+ +I +    ++  + EA +
Sbjct: 251 EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYK 310

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
                 +    P    Y  L  GL K G++D A  L    L +         Y   I + 
Sbjct: 311 IFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKML-DAGHNANPVVYTSLIRNF 369

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
              G  E   +V  E+ + GC P+  + +  +  + K G +E+ R +F ++R    L + 
Sbjct: 370 FIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDV 429

Query: 589 NTIVYDEILIEHMKK 603
            +     ILI  + K
Sbjct: 430 RSY---SILIHGLTK 441



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 153/330 (46%), Gaps = 5/330 (1%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +  +G++ E   + EKM       +   YT++IR        +   +V++E+ +   + D
Sbjct: 334 LGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPD 393

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           +    T +  + K G V +G  +F +++  G L D   Y +LI GL   G+  +  ++  
Sbjct: 394 LTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFH 453

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            +   G+  D   YN+++ G C+  +  KAY++ E   +  + P  +T   ++   A++ 
Sbjct: 454 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKID 513

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYN 416
           R+D  + L  + +     +   L        GK  RI  A  + EE+  KG + +V  +N
Sbjct: 514 RLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWN 573

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKII 474
            L+ AL++  E+ +AL  F  M+ +    N+ ++SI I   C V+  +  +A      + 
Sbjct: 574 SLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYN--KAFVFWQDMQ 631

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
           +   VP+V  Y  +  GL K+G I  A  L
Sbjct: 632 KQGLVPNVVTYTTMISGLAKVGNITDAYSL 661



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 135/312 (43%), Gaps = 36/312 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + +   I E +R     PDV +Y+ +I  L           ++  MK+     D  AY
Sbjct: 408 GEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAY 467

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++ G CK G+V + +E+  EMKE  +    A YG +++GL    ++ +A  L ++   
Sbjct: 468 NAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKS 527

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++ +Y+S+I G  +V + D+AY + E  ++  L P+  T N LL           
Sbjct: 528 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLL----------- 576

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKG-KGYSSVPIYNILMG 420
                                  + LV K E I  AL  F+ +K  K   +   Y+IL+ 
Sbjct: 577 -----------------------DALV-KAEEINEALVCFQSMKEMKCPPNTYTYSILIN 612

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L  + +  KA   +  M+   L  N ++++  I    + G+I +A     +      +P
Sbjct: 613 GLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIP 672

Query: 481 SVAAYNCLTKGL 492
             A++N L +G+
Sbjct: 673 DAASFNALIEGM 684



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 116/237 (48%), Gaps = 21/237 (8%)

Query: 136 SKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEK 193
           S  FH A KQ+G+  +  +YNA+   +C S                  G++ +  EILE+
Sbjct: 449 SNIFH-AMKQQGFALDARAYNAVVDGFCKS------------------GKVHKAYEILEE 489

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M+    +P V  Y A++  LA    LD    ++EE K   +E +V+ Y +LI G  K GR
Sbjct: 490 MKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGR 549

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           +   + +  EM + G+  +   +  L++ LV   ++ +A    + + +     +   Y+ 
Sbjct: 550 IDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSI 609

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           +I GLCRV++++KA+  ++   +  L P+  T   ++   A++G + + + L  + +
Sbjct: 610 LINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFK 666



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 72/148 (48%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI E   ILE+M +    P+V+ + +++  L     ++  L  ++ MK+     +   Y
Sbjct: 548 GRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTY 607

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GLC+  +  +    +++M++ G++ +   Y  +I GL   G +  A  L +    
Sbjct: 608 SILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKA 667

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYK 329
           +G   D   +N++I G+    +  +AY+
Sbjct: 668 NGGIPDAASFNALIEGMSNANRAMEAYQ 695


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 182/401 (45%), Gaps = 24/401 (5%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG   +   + ++M      P V  YT +IR L  E  +     ++  M+   +  ++  
Sbjct: 206 QGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYT 265

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T++ G CK   V +  EL++EM  +G+L +   +G+LI+GL    ++  A   L D+ 
Sbjct: 266 YNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMA 325

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   ++ +YN +I G C+     +A  L     + ++ PD  T + L+     + RM+
Sbjct: 326 SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRME 385

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
               LL +M+K  F   A           KE  +  A++V  ++  KG   ++  ++ L+
Sbjct: 386 EADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               + G+++ A+ L+ +M    L  + ++++  I  H + G+  EA   H ++ E    
Sbjct: 446 DGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLH 505

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+V   +CL  GLCK G I  A+ L     G   +G                        
Sbjct: 506 PNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKT--------------------- 544

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
             NE+ +  C PN V+ +A+I G+C  G + +A K F+++R
Sbjct: 545 --NELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMR 583



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 188/400 (47%), Gaps = 13/400 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E L +  KM      P + A   ++  L  +   D   +V+ +M       +V+ Y
Sbjct: 140 GLVEEALWVYYKMD---VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTY 196

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G C+ G  ++   LF EM E  I     IY +LI GL GE ++ +A  + + + +
Sbjct: 197 GTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRN 256

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           SG   +L  YN+++ G C++    KA +L++  + D L P+  T   L+    +   M +
Sbjct: 257 SGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVS 316

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYNIL 418
             K L  M    F V  ++  +   + G  K   +  AL +  E+ K +    V  Y+IL
Sbjct: 317 ARKFLIDMA--SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSIL 374

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L  +  +++A  L  +M+      N+++++  I  + + G++ +A E  +++ E   
Sbjct: 375 IKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGI 434

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEK 536
            P++  ++ L  G CK G+++AAM L  +    V  G  P    Y   I    + G  ++
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTE---MVIKGLLPDVVAYTALIDGHFKDGNTKE 491

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
              +  EM + G  PN    S +I G+CK G + +A K+F
Sbjct: 492 AFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 117/481 (24%), Positives = 211/481 (43%), Gaps = 61/481 (12%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA-----DQVPELMDSQ-GRIA-EM 187
           A + FH   ++     N   Y+A+ + L+   L+  A     D +  L +S+  RI   +
Sbjct: 53  ALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSV 112

Query: 188 LEILEKMRRNLCKPDVF-----AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
             +L ++  +   P+VF     A++ M  V  A         +W   K D++ A + A  
Sbjct: 113 FNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEA---------LWVYYKMDVLPA-MQACN 162

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++ GL K GR     +++ +M   G   +   YG LI+G   +G   KA  L  ++++ 
Sbjct: 163 MVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEK 222

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
                + IY  +I GLC   +  +A  +F       + P+  T N +         MD +
Sbjct: 223 KIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTM---------MDGY 273

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGA 421
            K+ A ++K                         AL++++E+ G G   +V  + IL+  
Sbjct: 274 CKI-AHVKK-------------------------ALELYQEMLGDGLLPNVVTFGILIDG 307

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L +  E+  A      M    +  N   ++  I  + ++G++ EA   H++I +   +P 
Sbjct: 308 LCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPD 367

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V  Y+ L KGLC +  ++ A  L+++ +      P    Y   I   C+ G  EK IEV 
Sbjct: 368 VFTYSILIKGLCGVDRMEEADGLLQE-MKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVC 426

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
           ++MT++G  PN +  S +I G CK G +E A  ++T +  + LL   + + Y  ++  H 
Sbjct: 427 SQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLL--PDVVAYTALIDGHF 484

Query: 602 K 602
           K
Sbjct: 485 K 485



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 95/238 (39%), Gaps = 32/238 (13%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRN--NLFRAADQVPE------------LMDS---QGRI 184
           K+KG+  N  +YN L   YC   N         Q+ E            L+D     G++
Sbjct: 395 KKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKM 454

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
              + +  +M      PDV AYTA+I     + N     R+ +EM++  +  +V     L
Sbjct: 455 EAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCL 514

Query: 245 IMGLCKGGRVVRGHELF-------------REMKENGILIDRAIYGVLIEGLVGEGKVGK 291
           I GLCK GR+    +LF              E+  +    +  +Y  LI+GL  +G++ K
Sbjct: 515 IDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFK 574

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
           A     D+  SG R D+     II G  R         L    ++  + P+ S    L
Sbjct: 575 ASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVL 632


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 116/507 (22%), Positives = 224/507 (44%), Gaps = 55/507 (10%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV-P 175
           ++ ++V +V++ +  P L  +FF W  +++ ++ ++ ++N +   L++++ F    ++  
Sbjct: 62  LSSEIVNDVMREQRRPELGFRFFIWTTRRRSFR-SWVTHNLVIDMLAKDDGFDTYWKILE 120

Query: 176 ELMDSQ------------------GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER 217
           EL +S                   G   + +E   KM+   CKPDVF Y +++ V+  + 
Sbjct: 121 ELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKE 180

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
                L V+ +M K     +   +V L+ GLCK G+     ++F EM + GI  +  IY 
Sbjct: 181 VFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYT 240

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           +++ GL    +      LL  +  SG   D    N+++ G C++ Q D+A+ L ++  ++
Sbjct: 241 IILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKE 300

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM- 396
                    + L+       R D   +   +M   K  +  D+  +   + G  E  M+ 
Sbjct: 301 GYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKM--FKAGIEPDVVLYTILIRGFCEVGMVD 358

Query: 397 -ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN-------S 447
            AL++  ++  +G S     YN L+    ++G       L  K R L LE++       S
Sbjct: 359 YALNMLNDMTQRGLSPDTYCYNALIKGFCDVG-------LLDKARSLQLEISKNDCFPTS 411

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
            +++I I     +G + EA +  N++  +   PS+  +N L  GLCK GE++ A  L   
Sbjct: 412 CTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYK 471

Query: 508 CLGNVASGPTEF--------------KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
               +   P+ F                   +  +C SG   K  ++L ++   G  P+ 
Sbjct: 472 M--EIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDI 529

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLR 580
           +  + +I+G CK   +  A K+F  L+
Sbjct: 530 MTYNVLINGFCKAKNINGAFKLFRELQ 556



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 118/508 (23%), Positives = 194/508 (38%), Gaps = 91/508 (17%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  ++  +L  M+ + C PD     A++        +D    + +  +K+     +  Y 
Sbjct: 251 RTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYS 310

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +LI GL +  R     E  R+M + GI  D  +Y +LI G    G V  A ++L D+   
Sbjct: 311 SLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQR 370

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D   YN++I G C V   DKA  L     ++D  P   T   L+      G +D  
Sbjct: 371 GLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEA 430

Query: 363 FKLLAQMEKLKFS--------------VAADLEK----FFEFLVGKE------------- 391
            ++  QME L  S               A +LE+    F++  +GK              
Sbjct: 431 RQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADR 490

Query: 392 -----------ER------IMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALY 433
                      ER      I+ A  +  +L   G    +  YN+L+    +   +  A  
Sbjct: 491 VMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFK 550

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           LF +++      +S+++   I          +A    +++++    PS A Y CL    C
Sbjct: 551 LFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSC 610

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTE-------------------------FK-------- 520
           + G++  A  L    L ++ S   E                         FK        
Sbjct: 611 RKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEKGELEKAVRCLLEMNFKLNNFEIAP 670

Query: 521 YALTILHVC---RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
           Y + ++ +C   RS EA KI  VL E   +  PP+   C  +I+G+CK G LE A  +F 
Sbjct: 671 YTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPS---CVMLINGLCKDGNLEMAVDIFL 727

Query: 578 NLRERKLLTE---ANTIVYDEILIEHMK 602
              E+  +      N ++   IL + MK
Sbjct: 728 YTLEKGFMLMPRICNQLLRSLILQDKMK 755



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 147/354 (41%), Gaps = 38/354 (10%)

Query: 145 QKGYKHNFASYNAL--AYC--------------LSRNNLFRAADQVPEL---MDSQGRIA 185
           Q+G   +   YNAL   +C              +S+N+ F  +     L   M   G + 
Sbjct: 369 QRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLD 428

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK--------------K 231
           E  +I  +M    C P +  + A+I  L     L+    ++ +M+               
Sbjct: 429 EARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGA 488

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
           D V  D  +  T++  LC+ G +++ ++L  ++ ++G++ D   Y VLI G      +  
Sbjct: 489 DRV-MDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNING 547

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A  L ++L   G+  D   Y ++I G  RV + + A+++ +  V++   P  +    L+ 
Sbjct: 548 AFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMT 607

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE--FLVGKEERIMMALDVFEELKGKGY 409
                G++   F L  +  +   S   +  K  E  F  G+ E+ +  L +    K   +
Sbjct: 608 WSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEKGELEKAVRCL-LEMNFKLNNF 666

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
              P Y I +  L +    ++AL +F  ++   ++VN  S  + I    + G++
Sbjct: 667 EIAP-YTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVMLINGLCKDGNL 719



 Score = 45.4 bits (106), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 65/134 (48%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + + +  L +M   L   ++  YT  +  L   R  +  L+++  +K+  ++ +  +
Sbjct: 646 KGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPS 705

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
            V LI GLCK G +    ++F    E G ++   I   L+  L+ + K+  A DLL  + 
Sbjct: 706 CVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLNRMN 765

Query: 301 DSGYRADLGIYNSI 314
            +GY  D  +++ I
Sbjct: 766 SAGYDLDEYLHHRI 779



 Score = 42.7 bits (99), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 88/222 (39%), Gaps = 46/222 (20%)

Query: 407 KGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           + + S   +N+++  L +         +  +++  N+++   +FS+ I  + +SG   +A
Sbjct: 91  RSFRSWVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKA 150

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
            E   K+ +    P V  YN                                     +IL
Sbjct: 151 VESFGKMKDFGCKPDVFTYN-------------------------------------SIL 173

Query: 527 HVCRSGEAEKI-IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
           HV    E   + + V N+M +    PN      +++G+CK+G  ++A K+F  + ++ + 
Sbjct: 174 HVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGI- 232

Query: 586 TEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
              NT++Y  IL    + K  D V        L + +K  GC
Sbjct: 233 -PPNTMIYTIILSGLCQAKRTDDV------HRLLNTMKVSGC 267


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 102/506 (20%), Positives = 220/506 (43%), Gaps = 46/506 (9%)

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM--- 178
           V   L  E    +A  F +WA     ++H    Y   A  L  N     A++V + M   
Sbjct: 104 VVASLADEAGSMVALSFLYWAIGFPKFRHFMRLYIVSATALIGNKNLERANEVMQCMVMN 163

Query: 179 -DSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
               G++ E + ++ +M+     P       ++ V      ++    ++ EM +  V  D
Sbjct: 164 FAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPD 223

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI---------------------- 275
            +++  +++  C  GRV+        M E G ++D A                       
Sbjct: 224 CVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFW 283

Query: 276 -------------YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
                        +  LI GL  +G + +A +LL+++V  G++ ++  + ++I GLC+  
Sbjct: 284 KMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKG 343

Query: 323 QFDKAYKLFEVTVQDD-LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
             +KA++LF   V+ D   P+  T   ++    +  +++    LL++M++    +  +  
Sbjct: 344 WTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQ--GLVPNTN 401

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
            +   + G  K    + A ++ + +  +G+S ++  YN ++  L + G + +A  L  K+
Sbjct: 402 TYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKV 461

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
               L+ + ++++I +  H    D   +    NK++++   P + +Y  L    C+  ++
Sbjct: 462 SVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQM 521

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
             +  L  + + ++   PT+  Y   I   CR G     +++   M+  GC P+ +   A
Sbjct: 522 KESERLFEEAV-SLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGA 580

Query: 559 IISGMCKHGTLEEARKVFTNLRERKL 584
           +ISG+CK   L++AR ++  + ++ L
Sbjct: 581 LISGLCKESKLDDARNLYDAMMDKGL 606



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 168/413 (40%), Gaps = 36/413 (8%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G +  ++    KM      P+V  +TA+I  L  + ++     + EEM +   + +V  
Sbjct: 272 KGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYT 331

Query: 241 YVTLIMGLCKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           + TLI GLCK G   +   LF ++ + +G   +   Y  +I G   E K+ +A  LL  +
Sbjct: 332 HTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRM 391

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            + G   +   Y ++I G C+V  F +AY+L ++  ++  +P+  T N ++    + G +
Sbjct: 392 QEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSL 451

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
           D  ++LL      K SV                           L+  G +    Y ILM
Sbjct: 452 DEAYRLLN-----KVSVHG-------------------------LQADGVT----YTILM 477

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
                  +  ++L  F KM  +    +  S++  I        + E+     + + +  +
Sbjct: 478 SVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLI 537

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+   Y  +  G C+ G    A+ L +  + N    P    Y   I  +C+  + +    
Sbjct: 538 PTKKTYTSMICGYCRYGNTSLAVKLFQR-MSNHGCAPDSITYGALISGLCKESKLDDARN 596

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           + + M  +G  P EV    +    CK      A  V   L +R+ +   NT+V
Sbjct: 597 LYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLV 649



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 139/325 (42%), Gaps = 14/325 (4%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
           L+ +R +  KP+V  YTAMI     E  L+    +   M++  +  +   Y TLI G CK
Sbjct: 353 LKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCK 412

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
            G  VR +EL   M + G   +   Y  +I+GL  +G + +A  LL  +   G +AD   
Sbjct: 413 VGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVT 472

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           Y  ++   CR    +++   F   ++    PD  +   L+       +M    +L    E
Sbjct: 473 YTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFE--E 530

Query: 371 KLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGE 427
            +   +    + +   + G  +     +A+ +F+ +   G +   I Y  L+  L +  +
Sbjct: 531 AVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESK 590

Query: 428 VKKALYLFGKM--RGLN-LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
           +  A  L+  M  +GL+  EV  L+ +     + +  D   A    +++ +   + +V  
Sbjct: 591 LDDARNLYDAMMDKGLSPCEVTRLTLAYE---YCKKDDSSTAINVLDRLEKRQWIRTV-- 645

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCL 509
            N L + LC  G++D A +     L
Sbjct: 646 -NTLVRKLCSEGKLDMAALFFHKLL 669



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 73/367 (19%), Positives = 151/367 (41%), Gaps = 42/367 (11%)

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           ++M   + G++     +  EM+  G++        +++  VG G V  A ++  ++   G
Sbjct: 160 MVMNFAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRG 219

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
              D   +  ++   C + +  +A +     V+     D +T   ++    + G ++   
Sbjct: 220 VSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVV 279

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
               +M  ++  +A ++  F   + G  K+  I  A ++ EE+  +G+  +V  +  L+ 
Sbjct: 280 GYFWKM--VEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLID 337

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L + G  +KA  LF K+      V S  +                             P
Sbjct: 338 GLCKKGWTEKAFRLFLKL------VRSDGYK----------------------------P 363

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +V  Y  +  G CK  +++ A ML+   +      P    Y   I   C+ G   +  E+
Sbjct: 364 NVHTYTAMINGYCKEDKLNRAEMLLSR-MQEQGLVPNTNTYTTLIDGHCKVGNFVRAYEL 422

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           ++ M +EG  PN    +AII G+CK G+L+EA ++   +    L  +A+ + Y  ++  H
Sbjct: 423 MDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGL--QADGVTYTILMSVH 480

Query: 601 MKKKTAD 607
            ++   +
Sbjct: 481 CRQADTN 487



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 108/278 (38%), Gaps = 20/278 (7%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKM 194
           A + F    +  GYK N  +Y A+     + +    A+ +   M  QG +          
Sbjct: 348 AFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLV---------- 397

Query: 195 RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
                 P+   YT +I       N      + + M K+    ++  Y  +I GLCK G +
Sbjct: 398 ------PNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSL 451

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
              + L  ++  +G+  D   Y +L+     +    ++      ++  G+  D+  Y ++
Sbjct: 452 DEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTL 511

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
           I   CR KQ  ++ +LFE  V   L P   T   ++      G      KL  +M     
Sbjct: 512 ISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMS--NH 569

Query: 375 SVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS 410
             A D   +   + G  KE ++  A ++++ +  KG S
Sbjct: 570 GCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLS 607


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 114/493 (23%), Positives = 218/493 (44%), Gaps = 49/493 (9%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV-P 175
           ++ ++V +V++ +  P L  +FF W  +++ ++ ++ ++N +   L++++ F    ++  
Sbjct: 62  LSSEIVNDVMREQRRPELGFRFFIWTTRRRSFR-SWVTHNLVIDMLAKDDGFDTYWKILE 120

Query: 176 ELMDSQ------------------GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER 217
           EL +S                   G   + +E   KM+   CKPDVF Y +++ V+  + 
Sbjct: 121 ELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKE 180

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
                L V+ +M K     +   +V L+ GLCK G+     ++F EM + GI  +  IY 
Sbjct: 181 VFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYT 240

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           +++ GL    +      LL  +  SG   D    N+++ G C++ Q D+A+ L ++  ++
Sbjct: 241 IILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKE 300

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM- 396
                    + L+       R D   +   +M   K  +  D+  +   + G  E  M+ 
Sbjct: 301 GYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKM--FKAGIEPDVVLYTILIRGFCEVGMVD 358

Query: 397 -ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN-------S 447
            AL++  ++  +G S     YN L+    ++G       L  K R L LE++       S
Sbjct: 359 YALNMLNDMTQRGLSPDTYCYNALIKGFCDVG-------LLDKARSLQLEISKNDCFPTS 411

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
            +++I I     +G + EA +  N++  +   PS+  +N L  GLCK GE++ A  L   
Sbjct: 412 CTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYK 471

Query: 508 CLGNVASGPTEF--------KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
               +   P+ F        +   T     R    E    VL++M + GC P+  +   +
Sbjct: 472 M--EIGKNPSLFLRLSQGADRVMDTANGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCL 529

Query: 560 ISGMCKHGTLEEA 572
           ++  C+ G L  A
Sbjct: 530 MTWSCRKGKLSVA 542



 Score = 45.4 bits (106), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 65/134 (48%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + + +  L +M   L   ++  YT  +  L   R  +  L+++  +K+  ++ +  +
Sbjct: 570 KGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPS 629

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
            V LI GLCK G +    ++F    E G ++   I   L+  L+ + K+  A DLL  + 
Sbjct: 630 CVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLNRMN 689

Query: 301 DSGYRADLGIYNSI 314
            +GY  D  +++ I
Sbjct: 690 SAGYDLDEYLHHRI 703


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 124/508 (24%), Positives = 210/508 (41%), Gaps = 64/508 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAA-------------------DQVPELMDSQGRI 184
            Q G +    +Y+AL   LSR  +  A                    + V   +   G +
Sbjct: 172 SQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNV 231

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           A+   I++K+  +   PD F YT+MI     + +LD+ L+V+ +M K+  E + + Y TL
Sbjct: 232 ADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTL 291

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLC  GRV    +L REM  +GIL         I  L   G    A  L  D+ + G 
Sbjct: 292 INGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGC 351

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  Y ++I GLC       A  LF    +D + P+  T N L+    E  R+   F 
Sbjct: 352 EPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 411

Query: 365 LLAQMEKLKFSVAADLEKFFEF-----LVGKEERIMMALDVFEELKGKGYSS-VPIYNIL 418
           +L  M   +   + ++  + E      ++G  ++ M+   V   +  +G+S+ +  YN +
Sbjct: 412 VLNLMG--RNGCSPNIVTYNEMIKGYCILGDPKKAML---VMNNMLQRGHSANLVTYNTI 466

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G    AL +   MR    + +  S++  I    +   +  A    N++++   
Sbjct: 467 IKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGL 526

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRD-----CLGNVA---------------SG--- 515
            P+   Y  L  G CK  ++D A  L+       C  NV                SG   
Sbjct: 527 CPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEE 586

Query: 516 -----------PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
                      P    Y   I  +C++G     +E+ N+M ++GC PN +  S++I  + 
Sbjct: 587 LCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALG 646

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTIV 592
           + G +EEA  +F  L    L+ +  T V
Sbjct: 647 QEGKVEEAENLFAELERHGLIPDEITYV 674



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 181/404 (44%), Gaps = 6/404 (1%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+  +A  +  L+ + ++  +  +FAY+A++  L+      A +  +  M  + V+ +++
Sbjct: 157 SKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLL 216

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I  LCK G V     + +++ E+ +  D   Y  +I G   +  +  A  +   +
Sbjct: 217 IYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQM 276

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   +   Y+++I GLC   + ++A+ L    +   + P   T    ++   +MG  
Sbjct: 277 AKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCY 336

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYN 416
           ++ ++L   M+        ++  +   + G      + +A+ +F  +   G + +   YN
Sbjct: 337 EDAWRLFVDMKNK--GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYN 394

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  L+E   +K A  +   M       N ++++  I+ +   GD  +A    N +++ 
Sbjct: 395 ALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQR 454

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
               ++  YN + KG C  G   +A+ ++ D + +    P E+ Y   I   C+  + E 
Sbjct: 455 GHSANLVTYNTIIKGYCDSGNTTSALRIL-DLMRDGGCKPDEWSYTELICGFCKISKMES 513

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
              + NEM  +G  PNEV  +A+I G CK   L+ A  +  +++
Sbjct: 514 AFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMK 557



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 166/383 (43%), Gaps = 6/383 (1%)

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M+   C+P+V+ YTA+I  L     L   + ++  M +D V  + + Y  LI  L +  R
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 405

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           +     +   M  NG   +   Y  +I+G    G   KA  ++ +++  G+ A+L  YN+
Sbjct: 406 IKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 465

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           II G C       A ++ ++       PD  +   L+    ++ +M++ F L  +M  + 
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEM--VD 523

Query: 374 FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKK 430
             +  +   +   + G  K+E++  A  + E +K  G   +V  YN+L+  L +      
Sbjct: 524 DGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSG 583

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A  L   M    +  N ++++  I    ++G    A E  NK+IE   +P++  Y+ L +
Sbjct: 584 AEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIR 643

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
            L + G+++ A  L  + L      P E  Y   I     SG+ E     L  M + GC 
Sbjct: 644 ALGQEGKVEEAENLFAE-LERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQ 702

Query: 551 PNEVICSAIISGMCKHGTLEEAR 573
           P       +I G+     L + R
Sbjct: 703 PTLWTYGVLIKGLKNEYLLADQR 725



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 109/520 (20%), Positives = 213/520 (40%), Gaps = 84/520 (16%)

Query: 134 LASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG------RIAEM 187
           +A   FH   +  G   N  +YNAL   L  N   + A  V  LM   G         EM
Sbjct: 373 VAIGLFHRMSRD-GVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431

Query: 188 LE-------------ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
           ++             ++  M +     ++  Y  +I+      N  + LR+ + M+    
Sbjct: 432 IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC 491

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           + D  +Y  LI G CK  ++     LF EM ++G+  +   Y  LI+G   + K+  A  
Sbjct: 492 KPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATS 551

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VC 352
           LL+ +  SG R ++  YN +I GL +   F  A +L +V +++ + P+  T   ++  +C
Sbjct: 552 LLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLC 611

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSS 411
                                                K     +AL++F ++  +G   +
Sbjct: 612 -------------------------------------KNGSTSLALEMFNKMIEQGCLPN 634

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           +  Y+ L+ AL + G+V++A  LF ++    L  + +++   I+ ++ SG +  A     
Sbjct: 635 LLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 694

Query: 472 KIIEMSQVPSVAAYNCLTKGL-CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
           ++I+    P++  Y  L KGL  +    D  +  + D + N +     F Y  T      
Sbjct: 695 RMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCS-----FGYQTT------ 743

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEV-ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
               +  + V++    E  P   V + +A++S +   G   EA ++  ++  + L  +  
Sbjct: 744 ---DQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQE 800

Query: 590 TIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKL 629
              Y+ +L   ++ +  DL +      G+   +  +GC++
Sbjct: 801 --AYNSLLCSLLRVRNVDLAM------GVFKHMSTQGCEV 832



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 8/136 (5%)

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           C   E  A  M   D L         F Y+  ++H+ R G    +++  + M  EG  PN
Sbjct: 155 CHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPN 214

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSG 612
            +I +A+I+ +CK G + +A  +   + E ++    +T  Y  +++ H +K   D   S 
Sbjct: 215 LLIYNAVINALCKDGNVADAETIMKKVFESEM--SPDTFTYTSMILGHCRKHDLD---SA 269

Query: 613 LKFFGLESKLKAKGCK 628
           L+ F   +++  +GC+
Sbjct: 270 LQVF---NQMAKEGCE 282



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 2/136 (1%)

Query: 178 MDSQGRIAEMLEILEKM-RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           + + GR  E  E+L  M  + LC PD  AY +++  L   RN+D  + V++ M     E 
Sbjct: 774 LSTAGRWFEANELLGSMISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 832

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
            +  Y  LI  LC+  R       F  M       D  +  VLI+GL+ +G      + L
Sbjct: 833 HLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFL 892

Query: 297 KDLVDSGYRADLGIYN 312
             +    Y     IY 
Sbjct: 893 HIMETRRYMPSFHIYT 908



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 24/186 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIR-----VLAAERNLDA-------CLRVWEE 228
            G++      L +M +  C+P ++ Y  +I+      L A++ L A       C   ++ 
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 742

Query: 229 MKKD--------LVEAD----VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
             +D        L E D    V     L+  L   GR    +EL   M   G+  D+  Y
Sbjct: 743 TDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAY 802

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
             L+  L+    V  A  + K +   G    L  Y  +I  LC++ +  +A   FE  + 
Sbjct: 803 NSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLM 862

Query: 337 DDLAPD 342
               PD
Sbjct: 863 RTWNPD 868


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 125/506 (24%), Positives = 210/506 (41%), Gaps = 60/506 (11%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAA-------------------DQVPELMDSQGRI 184
            Q G +    +Y+AL   LSR  +  A                    + V   +   G +
Sbjct: 342 SQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNV 401

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           A+   I++K+  +   PD F YT+MI     + +LD+ L+V+ +M K+  E + + Y TL
Sbjct: 402 ADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTL 461

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLC  GRV    +L REM  +GIL         I  L   G    A  L  D+ + G 
Sbjct: 462 INGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGC 521

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  Y ++I GLC       A  LF    +D + P+  T N L+    E  R+   F 
Sbjct: 522 EPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 581

Query: 365 LLAQMEK--LKFSVAADLEKFFEF-LVGKEERIMMALDVFEELKGKGYSS-VPIYNILMG 420
           +L  M +  L  ++    E    + ++G  ++ M+   V   +  +G+S+ +  YN ++ 
Sbjct: 582 VLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAML---VMNNMLQRGHSANLVTYNTIIK 638

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G    AL +   MR    + +  S++  I    +   +  A    N++++    P
Sbjct: 639 GYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCP 698

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRD-----CLGNVA---------------SG----- 515
           +   Y  L  G CK  ++D A  L+       C  NV                SG     
Sbjct: 699 NEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELC 758

Query: 516 ---------PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
                    P    Y   I  +C++G     +E+ N+M ++GC PN +  S++I  + + 
Sbjct: 759 KVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQE 818

Query: 567 GTLEEARKVFTNLRERKLLTEANTIV 592
           G +EEA  +F  L    L+ +  T V
Sbjct: 819 GKVEEAENLFAELERHGLIPDEITYV 844



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/428 (21%), Positives = 191/428 (44%), Gaps = 9/428 (2%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+  +A  +  L+ + ++  +  +FAY+A++  L+      A +  +  M  + V+ +++
Sbjct: 327 SKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLL 386

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I  LCK G V     + +++ E+ +  D   Y  +I G   +  +  A  +   +
Sbjct: 387 IYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQM 446

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   +   Y+++I GLC   + ++A+ L    +   + P   T    ++   +MG  
Sbjct: 447 AKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCY 506

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYN 416
           ++ ++L   M+        ++  +   + G      + +A+ +F  +   G + +   YN
Sbjct: 507 EDAWRLFVDMKNK--GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYN 564

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  L+E   +K A  +   M    L  N ++++  I+ +   GD  +A    N +++ 
Sbjct: 565 ALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQR 624

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
               ++  YN + KG C  G   +A+ ++ D + +    P E+ Y   I   C+  + E 
Sbjct: 625 GHSANLVTYNTIIKGYCDSGNTTSALRIL-DLMRDGGCKPDEWSYTELICGFCKISKMES 683

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
              + NEM  +G  PNEV  +A+I G CK   L+ A  +  +++        N   Y+ +
Sbjct: 684 AFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSG--CRPNVQTYN-V 740

Query: 597 LIEHMKKK 604
           LI  + K+
Sbjct: 741 LIHGLTKQ 748



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 167/383 (43%), Gaps = 6/383 (1%)

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M+   C+P+V+ YTA+I  L     L   + ++  M +D V  + + Y  LI  L +  R
Sbjct: 516 MKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 575

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           +     +   M  NG+  +   Y  +I+G    G   KA  ++ +++  G+ A+L  YN+
Sbjct: 576 IKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 635

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           II G C       A ++ ++       PD  +   L+    ++ +M++ F L  +M  + 
Sbjct: 636 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEM--VD 693

Query: 374 FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKK 430
             +  +   +   + G  K+E++  A  + E +K  G   +V  YN+L+  L +      
Sbjct: 694 DGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSG 753

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A  L   M    +  N ++++  I    ++G    A E  NK+IE   +P++  Y+ L +
Sbjct: 754 AEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIR 813

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
            L + G+++ A  L  + L      P E  Y   I     SG+ E     L  M + GC 
Sbjct: 814 ALGQEGKVEEAENLFAE-LERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQ 872

Query: 551 PNEVICSAIISGMCKHGTLEEAR 573
           P       +I G+     L + R
Sbjct: 873 PTLWTYGVLIKGLKNEYLLADQR 895



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 109/520 (20%), Positives = 213/520 (40%), Gaps = 84/520 (16%)

Query: 134  LASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIA------EM 187
            +A   FH   +  G   N  +YNAL   L  N   + A  V  LM   G         EM
Sbjct: 543  VAIGLFHRMSRD-GVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEM 601

Query: 188  LE-------------ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
            ++             ++  M +     ++  Y  +I+      N  + LR+ + M+    
Sbjct: 602  IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC 661

Query: 235  EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
            + D  +Y  LI G CK  ++     LF EM ++G+  +   Y  LI+G   + K+  A  
Sbjct: 662  KPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATS 721

Query: 295  LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VC 352
            LL+ +  SG R ++  YN +I GL +   F  A +L +V +++ + P+  T   ++  +C
Sbjct: 722  LLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLC 781

Query: 353  CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSS 411
                                                 K     +AL++F ++  +G   +
Sbjct: 782  -------------------------------------KNGSTSLALEMFNKMIEQGCLPN 804

Query: 412  VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
            +  Y+ L+ AL + G+V++A  LF ++    L  + +++   I+ ++ SG +  A     
Sbjct: 805  LLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 864

Query: 472  KIIEMSQVPSVAAYNCLTKGL-CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
            ++I+    P++  Y  L KGL  +    D  +  + D + N +     F Y  T      
Sbjct: 865  RMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCS-----FGYQTT------ 913

Query: 531  SGEAEKIIEVLNEMTQEGCPPNEV-ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
                +  + V++    E  P   V + +A++S +   G   EA ++  ++  + L  +  
Sbjct: 914  ---DQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQE 970

Query: 590  TIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKL 629
               Y+ +L   ++ +  DL +      G+   +  +GC++
Sbjct: 971  --AYNSLLCSLLRVRNVDLAM------GVFKHMSTQGCEV 1002



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 58/110 (52%), Gaps = 8/110 (7%)

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
           F Y+  ++H+ R G    +++  + M  EG  PN +I +A+I+ +CK G + +A  +   
Sbjct: 351 FAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKK 410

Query: 579 LRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
           + E ++    +T  Y  +++ H +K   D   S L+ F   +++  +GC+
Sbjct: 411 VFESEM--SPDTFTYTSMILGHCRKHDLD---SALQVF---NQMAKEGCE 452



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 2/136 (1%)

Query: 178  MDSQGRIAEMLEILEKM-RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
            + + GR  E  E+L  M  + LC PD  AY +++  L   RN+D  + V++ M     E 
Sbjct: 944  LSTAGRWFEANELLGSMISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 1002

Query: 237  DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
             +  Y  LI  LC+  R       F  M       D  +  VLI+GL+ +G      + L
Sbjct: 1003 HLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFL 1062

Query: 297  KDLVDSGYRADLGIYN 312
              +    Y     IY 
Sbjct: 1063 HIMETRRYMPSFHIYT 1078



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 24/186 (12%)

Query: 181  QGRIAEMLEILEKMRRNLCKPDVFAYTAMIR-----VLAAERNLDA-------CLRVWEE 228
             G++      L +M +  C+P ++ Y  +I+      L A++ L A       C   ++ 
Sbjct: 853  SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 912

Query: 229  MKKD--------LVEAD----VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
              +D        L E D    V     L+  L   GR    +EL   M   G+  D+  Y
Sbjct: 913  TDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAY 972

Query: 277  GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
              L+  L+    V  A  + K +   G    L  Y  +I  LC++ +  +A   FE  + 
Sbjct: 973  NSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLM 1032

Query: 337  DDLAPD 342
                PD
Sbjct: 1033 RTWNPD 1038


>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 628

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 201/429 (46%), Gaps = 23/429 (5%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM---KKDL---V 234
           +G+I E + + + M    C+P       +I  L    N    L++ E M     D     
Sbjct: 190 EGKIGEAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDFGINC 249

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           +  V++Y  +I  LCK G V R  E F EMKE GI  +   Y  L+ GL    +  +A  
Sbjct: 250 KPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKR 309

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           L  ++VD G   D+  ++ +IG LC+V +  +A  LF++ VQ  + P   T N L+    
Sbjct: 310 LFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYC 369

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVP 413
             G +D   K+   M   +    A           K+  +  A+ ++ E+  +G   +V 
Sbjct: 370 LAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQPTVI 429

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI---AIQCHVESGDILEACECH 470
            Y+       ++G+ +K   LFG+++  ++ ++S+S+SI    +    ++G + EA +  
Sbjct: 430 TYS-------KVGDARK---LFGEIQFQDMVLDSISYSIYNVYLDGLCKNGCVSEALDVF 479

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
             +       +VA +N L  G+C+  +++ A  L    L N A  P    Y + I  +C+
Sbjct: 480 YGLENCKFASNVAIFNSLINGMCRSEKLEIAWELFNR-LCNEALQPDVVTYTIMIYGLCK 538

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            G+ +K  ++  EM ++GC PN V  + ++ G+C +    +  ++   +  RKL  +A+T
Sbjct: 539 VGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSERPKIVELLHKMAARKLSPDAST 598

Query: 591 --IVYDEIL 597
             IV D +L
Sbjct: 599 LLIVMDILL 607



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 91/422 (21%), Positives = 174/422 (41%), Gaps = 19/422 (4%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + E L    +M      P +  +  +   LA ++     + +   M    +  + ++   
Sbjct: 88  LHEALHFFNQMIHMQTTPALSRFNNLFGALAKKKQYLHVISMCGRMNSIGLLKNFISLNI 147

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+  LC   RV  G  +F  +   G   +   +  L++GL  EGK+G+A  + K +    
Sbjct: 148 LLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFD 207

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD------DLAPDFSTVNPLLVCCAEMG 357
            R        +I GLCR      A KL E  +        +  P   + + ++    + G
Sbjct: 208 CRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSYSCIIDSLCKDG 267

Query: 358 RMDNFFKLLAQM-EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIY 415
            ++   +   +M EK  F            L    E    A  +F E+   G    V  +
Sbjct: 268 LVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEW-EEAKRLFIEMVDHGLLPDVVTF 326

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           ++L+GAL ++G+VK+A  LF  M    +E ++ +++I I+ +  +G + E  +    ++ 
Sbjct: 327 SVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIFLSMVN 386

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
                   +Y+ L K  CK  E+  AM+L R+ + +    PT   Y+       + G+A 
Sbjct: 387 KRCQHDAGSYSILMKAYCKDSEVHGAMILYREMM-DRGIQPTVITYS-------KVGDAR 438

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           K+   +          +  I +  + G+CK+G + EA  VF  L   K    +N  +++ 
Sbjct: 439 KLFGEIQFQDMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLENCKF--ASNVAIFNS 496

Query: 596 IL 597
           ++
Sbjct: 497 LI 498


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 174/382 (45%), Gaps = 38/382 (9%)

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M R  C P+   + A++   + +     C R+ E M    ++ +V++Y  L+ GLCK  R
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 254 VVRGHELFREMKENG--ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
                EL R+M   G     D   Y  L+ G    GKV ++ +LLK+++  G R D  +Y
Sbjct: 61  WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
             ++  LC+  +  +A +L E  ++    P   T N L+  C                  
Sbjct: 121 TKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCC----------------- 163

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKK 430
                             +E+ + MA  + +++   G  + V  YN LM  L + G +++
Sbjct: 164 ------------------REKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQE 205

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A  L  +M+      + +++S  +    +SG +L+A +   ++ +    P+V  YN +  
Sbjct: 206 AEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILD 265

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           GLCK G+ID A+ ++     +   G     Y+  +  +C+ G  ++   V+  M + GC 
Sbjct: 266 GLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCR 325

Query: 551 PNEVICSAIISGMCKHGTLEEA 572
           P+ V  S++++G+CK G +EEA
Sbjct: 326 PDVVTYSSLVNGLCKAGKIEEA 347



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 214/456 (46%), Gaps = 35/456 (7%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVW---EEMKKDLVE-- 235
           QGR  +   +LE M     +P+V +Y  ++  L         L  W   EE+ +D++   
Sbjct: 23  QGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCK-------LERWHEAEELVRDMISRG 75

Query: 236 ----ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
                D++ Y TL+ G CK G+V    EL +E+   G+  D  +Y  ++  L    ++G+
Sbjct: 76  GRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGE 135

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A +LL++++ +G    L  +N++I G CR K  + A  L +      +  D  T N L+ 
Sbjct: 136 ALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMD 195

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFS-VAADLEKFFEFLVG--KEERIMMALDVFEELKGKG 408
              + GR+    +LL   E++K S  A D+  +  F+ G  K  +++ A  V E+++   
Sbjct: 196 GLCKAGRLQEAEQLL---ERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSH 252

Query: 409 YS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN-LEVNSLSFSIAIQCHVESGDILEA 466
           +  +V  YN ++  L + G++  AL +  +M   +   +N + +S  +    + G   EA
Sbjct: 253 HDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEA 312

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
                 +      P V  Y+ L  GLCK G+I+ A+  VR+ +      P    Y   + 
Sbjct: 313 RSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVRE-MAMEGCKPNAVTYCSLVH 371

Query: 527 HVCRSG---EAEKIIEVL--NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            +C  G   EAE+++E +         CPP+    +A+I G+CK G +++A K F  +R 
Sbjct: 372 GLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRS 431

Query: 582 RKLLTEANTIVYDEI---LIEHMKKKTADLVLSGLK 614
           +    + + + Y  I   L    +   A+++LS ++
Sbjct: 432 QG--CDPDGVSYSTIVEGLARSGRALQAEMILSEVR 465



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 145/339 (42%), Gaps = 47/339 (13%)

Query: 129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEML 188
           E N  +A           G K +  +YN L      + L +A           GR+ E  
Sbjct: 165 EKNLEMADSLLQKMAAS-GVKADVVTYNTLM-----DGLCKA-----------GRLQEAE 207

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++LE+M+ + C PDV AY++ +  L     +    +V E+M+    + +V+ Y T++ GL
Sbjct: 208 QLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGL 267

Query: 249 CKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           CK G++    E+  +M   +G  ++   Y  +++GL   G+  +A  +++ +  +G R D
Sbjct: 268 CKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPD 327

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  Y+S++ GLC+  + ++A +       +   P+  T   L+      GR+        
Sbjct: 328 VVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRL-------- 379

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE 427
                                 + ER++  +            SV  YN L+G L + G 
Sbjct: 380 ---------------------AEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGR 418

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           +  AL  F +MR    + + +S+S  ++    SG  L+A
Sbjct: 419 IDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNL-----CKPDVFAYTAMI 210
           NA+ YC   + L            S GR+AE   ++E+M         C P V  Y A+I
Sbjct: 362 NAVTYCSLVHGLC-----------SCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALI 410

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
             L     +D  L+ ++ M+    + D ++Y T++ GL + GR ++   +  E++
Sbjct: 411 GGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEVR 465


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 107/466 (22%), Positives = 193/466 (41%), Gaps = 57/466 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           K+ G      +YN L    +R    + A +V E M + G                   ++
Sbjct: 266 KKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKV 325

Query: 185 AEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
            E   + ++M R     PDV  Y  +       R     LR+ EEM++  V+A ++ +  
Sbjct: 326 DEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNI 385

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I GLCK G +        +M ++G+  D   Y  LI      G + KA  L+ ++V  G
Sbjct: 386 VIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRG 445

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            + D    N+++  LC+ K++++A  L +   Q    PD                     
Sbjct: 446 LKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPD--------------------- 484

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGAL 422
                    + S    +  +F     KE     AL +++E+  K  + S+  YN L+  L
Sbjct: 485 ---------EVSYGTVMAAYF-----KEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGL 530

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
             +G +K+A+    ++    L  +  +++I I  + + GD+  A + HNK++E S  P V
Sbjct: 531 SRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDV 590

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
              N L  GLC  G++D A+ L    +           Y   I  +C+ G+ +  +    
Sbjct: 591 VTCNTLMNGLCLNGKLDKALKLFESWVEK-GKKVDVITYNTLIQTMCKDGDVDTALHFFA 649

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           +M   G  P+    + ++S + + G  EEA+ +   L E   L+++
Sbjct: 650 DMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQS 695



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 205/469 (43%), Gaps = 54/469 (11%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+ + +  ++    ++  L   L     M+   +  D + Y TL+   C+ G +     L
Sbjct: 202 PNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARAL 261

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              MK++G+   R  Y  L+      G + +A  +++ +  +G+  DL  YN +  GLC+
Sbjct: 262 LARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQ 321

Query: 321 VKQFDKAYKL-FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
             + D+A++L  E+     L PD  T N L   C +     +  +LL +M   +  V A 
Sbjct: 322 AGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMR--EKGVKAT 379

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
           L      + G  K+  +  AL    ++   G +  V  YN L+ A  + G + KA  L  
Sbjct: 380 LVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMD 439

Query: 437 KM--RGLNLEVNSLSFSIAIQC-----------------------HVESGDILE------ 465
           +M  RGL L+  +L+  +   C                        V  G ++       
Sbjct: 440 EMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEY 499

Query: 466 ----ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTEF 519
               A    +++IE    PS++ YN L KGL ++G +  A+  + + +  G V   P + 
Sbjct: 500 NSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLV---PDDT 556

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            Y + I   C+ G+ E   +  N+M +    P+ V C+ +++G+C +G L++A K+F + 
Sbjct: 557 TYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESW 616

Query: 580 RERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
            E+    + + I Y+ ++    K    D   + L FF   + ++A+G +
Sbjct: 617 VEKG--KKVDVITYNTLIQTMCKDGDVD---TALHFF---ADMEARGLQ 657



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 111/501 (22%), Positives = 207/501 (41%), Gaps = 82/501 (16%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK-DLVEADVMA 240
           G I +  +++E M  N  +PD++ Y  +   L     +D   R+ +EM++   +  DV+ 
Sbjct: 288 GWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVT 347

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TL     K         L  EM+E G+      + ++I+GL  +G++  A   L  + 
Sbjct: 348 YNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMA 407

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D G   D+  YN++I   C+     KAY L +  V+  L  D  T+N +L    +  R +
Sbjct: 408 DDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYE 467

Query: 361 NFFKLLAQMEKLKF-----SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPI 414
               LL    +  F     S    +  +F     KE     AL +++E+  K  + S+  
Sbjct: 468 EAQGLLQSPPQRGFMPDEVSYGTVMAAYF-----KEYNSEPALRLWDEMIEKKLTPSIST 522

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YN L+  L  +G +K+A+    ++    L  +  +++I I  + + GD+  A + HNK++
Sbjct: 523 YNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMV 582

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL---------------------GNVA 513
           E S  P V   N L  GLC  G++D A+ L    +                     G+V 
Sbjct: 583 ENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVD 642

Query: 514 SG-------------PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC----------P 550
           +              P  F Y + +  +  +G  E+   +L+++ + G            
Sbjct: 643 TALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSFSSPLLK 702

Query: 551 PNEV-------------------------ICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
           P+ V                           + +++G+C  G  +EA+ +   + ++ + 
Sbjct: 703 PSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQKGMS 762

Query: 586 TEANT-IVYDEILIEHMKKKT 605
            +++T I   E L++  K+ T
Sbjct: 763 VDSSTYITLMEGLVKRQKRLT 783



 Score = 43.1 bits (100), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 84/213 (39%), Gaps = 26/213 (12%)

Query: 98  KNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFH-WAGKQKGYKHNFASYN 156
           +N FQ+  ++V    K   VT + +   L +      A K F  W   +KG K +  +YN
Sbjct: 572 ENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWV--EKGKKVDVITYN 629

Query: 157 ALAYCLSRNNLFRAA-------------------DQVPELMDSQGRIAEMLEILEKMRRN 197
            L   + ++     A                   + V   +   GR  E   +L K+  +
Sbjct: 630 TLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAES 689

Query: 198 LCKPDVFAYTAM--IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVV 255
                 F+   +    V  AE   DA  +  EE  ++  ++   AY  L+ GLC  G+  
Sbjct: 690 GTLSQSFSSPLLKPSSVDEAESGKDA--KTEEETVENPQDSASEAYTKLVNGLCTSGQFK 747

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
               +  EM + G+ +D + Y  L+EGLV   K
Sbjct: 748 EAKAILDEMMQKGMSVDSSTYITLMEGLVKRQK 780


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 197/470 (41%), Gaps = 51/470 (10%)

Query: 163 SRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
           SR   F     +  L+DS G I   L +  +M    C P+   Y  ++  L  +      
Sbjct: 168 SRPTAFVYNTILKALVDS-GVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDA 226

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
           L++++EM    +  +V  Y  L+  LC  G++    +L   MK+ G L D   Y   + G
Sbjct: 227 LKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSG 286

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           L   G+V +A   L  L D G+   L  Y+ +I GL + ++FD+ +  ++  ++ +++PD
Sbjct: 287 LCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPD 346

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF--------------SVAADLEKFFEF-- 386
                 ++  CAE GR+++    L  M+K  F                  DLE+      
Sbjct: 347 VVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRS 406

Query: 387 --------LVGKEERIMM-----------ALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
                   L    + IM+           A+ +F+E+   G   +V  YN L+      G
Sbjct: 407 EMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREG 466

Query: 427 EVKKALYLFGKMR-------------GLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            +++A  LF KM              G N   +S S    +    +SG +L+A +    I
Sbjct: 467 RLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSI 526

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           I+   VP V  YN L  GLCK   +D A+ L ++ L      P E  Y   I  + R+  
Sbjct: 527 IDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKE-LQLKGISPDEITYGTLIDGLLRAHR 585

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
               + +   + Q G  P+  I ++++  +C+   L +A  ++ +   +K
Sbjct: 586 ENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKK 635



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 196/420 (46%), Gaps = 25/420 (5%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S GR A+ ++   +M     +P  F Y  +++ L     +   L ++  M       +  
Sbjct: 149 SAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRA 208

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  L+ GLCK G      ++F EM + GI+ +  IY VL+  L   GK+ +A  LL  +
Sbjct: 209 TYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSM 268

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D G   D   YN+ + GLC+V + ++A++   +      A      + L+    +  R 
Sbjct: 269 KDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRF 328

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGYSSVP---I 414
           D  F     M  L+ +++ D+  +   + G  E  RI  AL   + +K KG+  VP    
Sbjct: 329 DEGFGYYKTM--LERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGF--VPDTFC 384

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YN ++  L + G++++A  L  +M   NL ++S + +I I    + G + EA +  +++ 
Sbjct: 385 YNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMG 444

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMML-------------VRDCLGNVASGPTEFKY 521
           E    P+V  YN L  G  + G ++ A ML             +R  LG  A+   + + 
Sbjct: 445 EHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLG--ANQVCDSES 502

Query: 522 ALTILH-VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
              ++H +C+SG+  K  ++L  +   G  P+ V  + +I+G+CK   L+ A ++F  L+
Sbjct: 503 LRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQ 562



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 164/391 (41%), Gaps = 28/391 (7%)

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           + RN+  PDV  YT MIR  A    ++  L   + MKK     D   Y T++  LC  G 
Sbjct: 339 LERNI-SPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGD 397

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           + R H L  EM +N +++D     ++I GL   G V +A  +  ++ + G    +  YN+
Sbjct: 398 LERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNA 457

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           +I G  R  + ++A  LF                       EMG   + F  L     L 
Sbjct: 458 LIDGFYREGRLEEARMLFHKM--------------------EMGNNPSLFLRLT----LG 493

Query: 374 FSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKK 430
            +   D E   + +  + +  +++ A  +   +   G    V  YN L+  L +   +  
Sbjct: 494 ANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDG 553

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A+ LF +++   +  + +++   I   + +    +A      I++    PS++ YN + +
Sbjct: 554 AVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMR 613

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
            LC++ ++  A+ L  D L    + P E +           G  +  +  L ++ QE   
Sbjct: 614 SLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQEYGY 673

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            +    +  + G+C+    ++A ++F  L+E
Sbjct: 674 ISSNPYTIWLIGLCQVRRTDDALRIFHTLQE 704



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 89/185 (48%), Gaps = 2/185 (1%)

Query: 398 LDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
            D   + +  G  +S   +  L+ A    G    A+  F +M        +  ++  ++ 
Sbjct: 122 FDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKA 181

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
            V+SG IL A   +N+++     P+ A YN L  GLCK G    A+ +  + L +    P
Sbjct: 182 LVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEML-DRGIMP 240

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
               Y + +  +C +G+ ++ +++L  M  +GC P+EV  +A +SG+CK G + EA +  
Sbjct: 241 NVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRL 300

Query: 577 TNLRE 581
             L++
Sbjct: 301 VMLQD 305



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 117/283 (41%), Gaps = 19/283 (6%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA---- 236
           +G + E ++I ++M  + C P V  Y A+I     E  L+    ++ +M+     +    
Sbjct: 430 RGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLR 489

Query: 237 ---------DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
                    D  +   L+  +C+ G+V++ ++L R + ++G++ D   Y  LI GL    
Sbjct: 490 LTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKAR 549

Query: 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
            +  A  L K+L   G   D   Y ++I GL R  + + A  LF+  +Q   +P  S  N
Sbjct: 550 NLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYN 609

Query: 348 PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL--- 404
            ++     M ++     L       K++   + E        KE       D   EL   
Sbjct: 610 SMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLAN--AHKEIEDGSLDDGVRELIKI 667

Query: 405 -KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
            +  GY S   Y I +  L ++     AL +F  ++   +++ 
Sbjct: 668 DQEYGYISSNPYTIWLIGLCQVRRTDDALRIFHTLQEFGIDIT 710



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 90/216 (41%), Gaps = 49/216 (22%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           M   G++ +  ++L  +  +   PDV  Y  +I  L   RNLD  +R+++E++   +  D
Sbjct: 510 MCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPD 569

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
            + Y TLI GL +  R      LF+ + ++G     +IY  ++  L    K+ +A +L  
Sbjct: 570 EITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWL 629

Query: 298 DL-------------------------VDSGYRADLGI-----------YNSIIGGLCRV 321
           D                          +D G R  + I           Y   + GLC+V
Sbjct: 630 DYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQEYGYISSNPYTIWLIGLCQV 689

Query: 322 KQFDKAYKLFEVTVQD---DLAPDFSTVNPLLVCCA 354
           ++ D A ++F  T+Q+   D+ P          CCA
Sbjct: 690 RRTDDALRIFH-TLQEFGIDITP---------ACCA 715


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/472 (23%), Positives = 196/472 (41%), Gaps = 58/472 (12%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+G +    +YN L   L R   F  A Q+  LM               M+R +  PD  
Sbjct: 430 QEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLM---------------MKRGVA-PDEV 473

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y+ ++  L    N +    +W+++         + + T+I GLCK G++V   E+F +M
Sbjct: 474 GYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKM 533

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKA-------------------------------- 292
           K+ G   D   Y  LI+G      VG+A                                
Sbjct: 534 KDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRL 593

Query: 293 ---CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
               DLL ++   G   ++  Y ++I G C+    DKA+  +    ++ L+ +    + +
Sbjct: 594 VEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTM 653

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF--EFLVGKEERIMMALDVFEELKGK 407
           +     +GR+D    L+ +M    F    D E F   +      ++I  +LD  E  K  
Sbjct: 654 VSGLYRLGRIDEANLLMQKMVDHGF--FPDHECFLKSDIRYAAIQKIADSLD--ESCKTF 709

Query: 408 GYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
              +  +YNI +  L + G+V  A   F  +       ++ ++   I  +  +G++ EA 
Sbjct: 710 LLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAF 769

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
              ++++    VP++  YN L  GLCK   +D A  L    L      P    Y   I  
Sbjct: 770 RLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHK-LHQKGLFPNVVTYNTLIDG 828

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            C+ G  +   ++ ++M +EG  P+ V  SA+I+G+CKHG +E + K+   +
Sbjct: 829 YCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQM 880



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 189/415 (45%), Gaps = 19/415 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E  EI +KM+   C PD   Y  +I       N+    +V   M+++ +   +  Y
Sbjct: 521 GKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMY 580

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI GL K  R+V   +L  EM   G+  +   YG LI+G   EG + KA     ++ +
Sbjct: 581 NSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTE 640

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR--- 358
           +G  A++ I ++++ GL R+ + D+A  L +  V     PD        +  A + +   
Sbjct: 641 NGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIAD 700

Query: 359 -MDNFFKLLAQMEKLKFSVA-ADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP--- 413
            +D   K       + +++A A L K      GK +    A   F  L  KG+  VP   
Sbjct: 701 SLDESCKTFLLPNNIVYNIAIAGLCK-----TGKVDD---ARRFFSMLSLKGF--VPDNF 750

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            Y  L+      G V +A  L  +M    L  N ++++  I    +S ++  A    +K+
Sbjct: 751 TYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKL 810

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            +    P+V  YN L  G CKIG +DAA  L +D +      P+   Y+  I  +C+ G+
Sbjct: 811 HQKGLFPNVVTYNTLIDGYCKIGNMDAAFKL-KDKMIEEGISPSVVTYSALINGLCKHGD 869

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
            E+ +++LN+M + G     +    ++ G  + G +++  K++  +  R L T A
Sbjct: 870 IERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMMHIRCLSTTA 924



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 123/536 (22%), Positives = 244/536 (45%), Gaps = 34/536 (6%)

Query: 71  SPPSDPKTFQLQR--HLSPIARFITDAFRKNQFQWGPQVVTELSKL---RR--------- 116
           +PP  P    L+R  HLS   R +    R       P++V+ + +L   RR         
Sbjct: 9   TPPL-PSRLHLRRPIHLS---RTLLWKLRDESHPAPPELVSRICRLVLLRRCNAISKLNF 64

Query: 117 -VTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA--- 171
             + D+V  VL+ +  NPT +  FF +  KQ+ ++ N  SY  L + LSR  ++      
Sbjct: 65  VFSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAY 124

Query: 172 -DQVPELMDSQGRIAEMLEILEKMRRNLC-KPDVFAYTAMIRVLAAERNLDA-CLRVWEE 228
            +Q+ +L   + R   + + L  + R     P VF    MI  +  E+ L    L V++ 
Sbjct: 125 LNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFD---MILKVYVEKGLTKNALYVFDN 181

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           M K      + +  +L+  L K G     H ++++M   GI+ D  +  +++     +GK
Sbjct: 182 MGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGK 241

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           V +A   +K + + G   ++  Y+S+I G   +   + A  + +   +  ++ +  T   
Sbjct: 242 VDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTL 301

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKG 406
           L+    +  +MD   K+L  M++ + ++  D   +   + G  +  +I  A+ + +E+  
Sbjct: 302 LIKGYCKQCKMDEAEKVLRGMQE-EAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLR 360

Query: 407 KGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G  +++ I N L+    + GE+ +A  +  +M   NL+ +S S++  +  +   G   E
Sbjct: 361 LGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSE 420

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A    +K+++    P+V  YN L KGLC++G  D A+  +   +      P E  Y+  +
Sbjct: 421 AFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQ-IWHLMMKRGVAPDEVGYSTLL 479

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
             + +    E    +  ++   G   + +  + +ISG+CK G + EA ++F  +++
Sbjct: 480 DGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKD 535



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/460 (21%), Positives = 193/460 (41%), Gaps = 36/460 (7%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I E   ++ +M     KPD ++Y  ++     E +      + ++M ++ +E  V+ 
Sbjct: 380 RGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLT 439

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TL+ GLC+ G      +++  M + G+  D   Y  L++GL        A  L KD++
Sbjct: 440 YNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDIL 499

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G+      +N++I GLC++ +  +A ++F+       +PD  T   L+    +   + 
Sbjct: 500 ARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVG 559

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
             FK+   ME+   S + ++       + K  R++   D+  E+  +G + ++  Y  L+
Sbjct: 560 QAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALI 619

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS-- 477
               + G + KA   + +M    L  N +  S  +      G I EA     K+++    
Sbjct: 620 DGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFF 679

Query: 478 ------------------------------QVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
                                          +P+   YN    GLCK G++D A      
Sbjct: 680 PDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFF-S 738

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            L      P  F Y   I     +G  ++   + +EM + G  PN V  +A+I+G+CK  
Sbjct: 739 MLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSE 798

Query: 568 TLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
            ++ A+++F  L ++ L    N + Y+ ++  + K    D
Sbjct: 799 NVDRAQRLFHKLHQKGLF--PNVVTYNTLIDGYCKIGNMD 836



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 97/432 (22%), Positives = 183/432 (42%), Gaps = 58/432 (13%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLC-KP 201
           +KG   N  +Y  L   YC                   Q ++ E  ++L  M+      P
Sbjct: 289 EKGVSRNVVTYTLLIKGYC------------------KQCKMDEAEKVLRGMQEEAALVP 330

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           D  AY  +I        +D  +R+ +EM +  ++ ++    +LI G CK G +     + 
Sbjct: 331 DERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVI 390

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             M +  +  D   Y  L++G   EG   +A +L   ++  G    +  YN+++ GLCRV
Sbjct: 391 TRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRV 450

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
             FD A +++ + ++  +APD    + LL         D  FK+                
Sbjct: 451 GAFDDALQIWHLMMKRGVAPDEVGYSTLL---------DGLFKM---------------- 485

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRG 440
                     E    A  +++++  +G++   I +N ++  L ++G++ +A  +F KM+ 
Sbjct: 486 ----------ENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKD 535

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
           L    + +++   I  + ++ ++ +A +    +      PS+  YN L  GL K   +  
Sbjct: 536 LGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVE 595

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
              L+ + +G     P    Y   I   C+ G  +K      EMT+ G   N +ICS ++
Sbjct: 596 VTDLLTE-MGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMV 654

Query: 561 SGMCKHGTLEEA 572
           SG+ + G ++EA
Sbjct: 655 SGLYRLGRIDEA 666



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 155/374 (41%), Gaps = 52/374 (13%)

Query: 91  FITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKH 150
            I+  F+  +      ++TE+  +R +TP++V          T  +    W  K+     
Sbjct: 583 LISGLFKSRRLVEVTDLLTEMG-IRGLTPNIV----------TYGALIDGWC-KEGMLDK 630

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY-TAM 209
            F+SY  +       N+   +  V  L    GRI E   +++KM  +   PD   +  + 
Sbjct: 631 AFSSYFEMTENGLSANIIICSTMVSGLY-RLGRIDEANLLMQKMVDHGFFPDHECFLKSD 689

Query: 210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
           IR  A ++  D+     +E  K  +  + + Y   I GLCK G+V      F  +   G 
Sbjct: 690 IRYAAIQKIADS----LDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGF 745

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
           + D   Y  LI G    G V +A  L  +++  G   ++  YN++I GLC+ +  D+A +
Sbjct: 746 VPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQR 805

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG 389
           LF    Q  L P+  T N L+    ++G MD  FKL  +M +   S              
Sbjct: 806 LFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGIS-------------- 851

Query: 390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
                                SV  Y+ L+  L + G++++++ L  +M    ++   + 
Sbjct: 852 --------------------PSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIE 891

Query: 450 FSIAIQCHVESGDI 463
           +   +Q ++ SG++
Sbjct: 892 YCTLVQGYIRSGEM 905



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 22/199 (11%)

Query: 400 VFEELKG--KGYSSVP-IYNILMGALLEIGEVKKALYLFGKM---------RGLNLEVNS 447
           +++EL G  + ++  P ++++++   +E G  K ALY+F  M         R  N  +N+
Sbjct: 141 IWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNN 200

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
           L         V++G+   A   + ++I +  VP V   + +    CK G++D A   V+ 
Sbjct: 201 L---------VKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKK 251

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            + N+   P    Y   I      G+ E    VL  M+++G   N V  + +I G CK  
Sbjct: 252 -MENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQC 310

Query: 568 TLEEARKVFTNLRERKLLT 586
            ++EA KV   ++E   L 
Sbjct: 311 KMDEAEKVLRGMQEEAALV 329


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 200/438 (45%), Gaps = 15/438 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++ R  + + +L  M+ +  +PDV  Y  +IR L    ++D  + +  EM +  +E +V+
Sbjct: 125 AERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVV 184

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  L+ G CK GR     ++F EM   GI  D  +Y  LI+ L  EGKV KA  ++  +
Sbjct: 185 VYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKM 244

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           ++ G   ++  YN +I  +C+     +A  L    ++  +A D  T N L+   + +  M
Sbjct: 245 MERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEM 304

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           D    LL +M   +  V  ++  F   + G  K  R+  A  V + +   G + ++  +N
Sbjct: 305 DEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFN 364

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           +L+G LL + +VKKA+ L  +M    LE +S ++SI I    +   +  A    +K+   
Sbjct: 365 LLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRD 424

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLV----RDCLGNVASGPTEFKYALTILHVCRSG 532
              P +  Y  L   LC+ G ++ A        ++C  +V +      Y+  I   CR  
Sbjct: 425 GIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKNCKLDVVA------YSTMIHGACRLR 478

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           + +   E L  M  EG  P+ V  S +I+     G L  A +V   +     +   +  V
Sbjct: 479 DRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFV--PDVAV 536

Query: 593 YDEILIEHMKKKTADLVL 610
           +D ++  +  K   + VL
Sbjct: 537 FDSLIKGYGAKGDTEKVL 554



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 182/416 (43%), Gaps = 48/416 (11%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           +E+L +M  +  +P+V  Y+ +++        +   +V+EEM    +E DV+ Y  LI  
Sbjct: 168 VELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDS 227

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC+ G+V +  ++  +M E G+  +   Y VLI  +  EG V +A  L  ++++ G   D
Sbjct: 228 LCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALD 287

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD--LAPDFSTVNPLLVCCAEMGRMDNFFKL 365
              YN++I GL  V + D+A  L E  +  +  + P+  T N ++    + GRM   F++
Sbjct: 288 AVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQV 347

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSSVPI-YNILMGA 421
              M +     A +L  F   L+G   +  ++  A+++ +E+   G       Y+IL+  
Sbjct: 348 RDMMAE--NGCACNLVTF-NLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILING 404

Query: 422 LLEIGEVKKALYLFGKMR---------------------GL-------------NLEVNS 447
             ++ +V +A  L  KMR                     G+             N +++ 
Sbjct: 405 FCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKNCKLDV 464

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
           +++S  I       D   A E    +++   +P    Y+ L       G++ AA  +++ 
Sbjct: 465 VAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQ 524

Query: 508 CLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
                ASG  P    +   I      G+ EK++E++ EMT +    +  I S I +
Sbjct: 525 M---TASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMTAKDIALDSKIISTIYT 577



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 1/163 (0%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +L KMRR+  +P++  Y  ++  L  +  ++     ++EM K+  + DV+AY T+I G C
Sbjct: 417 LLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKN-CKLDVVAYSTMIHGAC 475

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           +        E  + M + G++ D   Y +LI      G +G A  +LK +  SG+  D+ 
Sbjct: 476 RLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVA 535

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
           +++S+I G       +K  +L       D+A D   ++ +  C
Sbjct: 536 VFDSLIKGYGAKGDTEKVLELIREMTAKDIALDSKIISTIYTC 578



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 10/179 (5%)

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           +++S++  +      G  L+A     +++     P+  +Y  L + LC       A+ L+
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLL 136

Query: 506 RDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           RD     ASG  P    Y   I  +C + + +K +E+L EM + G  PN V+ S ++ G 
Sbjct: 137 RDM---QASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGY 193

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEI---LIEHMKKKTADLVLSGLKFFGLE 619
           CK G  E   KVF  +  R +  E + ++Y  +   L    K K A  V+  +   GLE
Sbjct: 194 CKAGRWECVSKVFEEMSGRGI--EPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLE 250


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/463 (25%), Positives = 206/463 (44%), Gaps = 34/463 (7%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G   NF + N L  CL   N                R+ E L  +  + R    PDV  Y
Sbjct: 121 GLSPNFFTLNILINCLCNVN----------------RVREGLSAMAGIMRRGYIPDVVTY 164

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           T++I+ L  E  +    R++  M+K     +V+ Y TLI GLC+ G +    +L +EM  
Sbjct: 165 TSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEML- 223

Query: 267 NGILIDRAI--------YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           NG     AI        Y ++I+ L   GK  +A  L  ++VD G R D+  ++++I  L
Sbjct: 224 NGT-SPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTL 282

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C+     +A K  E  +   + PD  T   L+     +G +D+  +L   M    +    
Sbjct: 283 CKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYE--P 340

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLF 435
           D+  +   + G  K   +  A+ ++ E+   G +  +  + +L+  L   G+V  A  LF
Sbjct: 341 DVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLF 400

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
           G ++   +  N    S+ +    ++G + EA E  N++   +    + ++NCL  GLCK 
Sbjct: 401 GVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKA 460

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
            +++ A  L    L      P    Y + I   C++G+ +    +   M + GC PN + 
Sbjct: 461 RKLETAWELFEK-LSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLT 519

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN--TIVYDEI 596
            SA++ G  K+  LEE  K+   + ++ +   A+  TIV D +
Sbjct: 520 YSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVEDMV 562



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 134/308 (43%), Gaps = 24/308 (7%)

Query: 110 ELSKLRRVTPDLVAEVLKVENNPTL----ASKFFHWAGKQKGYKHNFASYNAL--AYCLS 163
           E   LR + PDL      +E    +    ++K    +   KGY+ +  SY  L   YC +
Sbjct: 296 ETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKT 355

Query: 164 RNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACL 223
            N                  + E +++  +M R    PD+  +  +++ L     +    
Sbjct: 356 FN------------------VEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAK 397

Query: 224 RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
           +++  +K   V  ++      + GLCK G +    ELF E+K   + +D   +  LI+GL
Sbjct: 398 KLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGL 457

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
               K+  A +L + L   G + D+  Y  +I G C+  Q D A  LF++  ++   P+ 
Sbjct: 458 CKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNL 517

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE 403
            T + LL    +  +++   KLL +M +   S+AA +    E +V K+E+    LD+ + 
Sbjct: 518 LTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVEDMVSKDEKCREWLDILQR 577

Query: 404 LKGKGYSS 411
              + + S
Sbjct: 578 FPVQKHPS 585



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 40/220 (18%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC-----HVESG---- 461
           S+  +N+L+GAL +I    +   L+ KM    L  N  + +I I C      V  G    
Sbjct: 90  SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAM 149

Query: 462 --------------------------DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
                                      I EA     ++ ++   P+V  Y  L KGLC+ 
Sbjct: 150 AGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRT 209

Query: 496 GEIDAAMMLVRDCLGN-----VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           G I+ A+ L ++ L       +   P  F Y + I  +C+ G+ ++   + NEM  +G  
Sbjct: 210 GNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVR 269

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           P+ V  SA+I  +CK G + EA+K    +  R ++ +  T
Sbjct: 270 PDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFT 309


>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
          Length = 1098

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/451 (23%), Positives = 194/451 (43%), Gaps = 36/451 (7%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E   IL +M     +PD ++Y +++     +  ++     +  M ++   A  + Y
Sbjct: 398 GRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTY 457

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ G C  G +     L+  M + GI  +      L++G    GK  KA +L K+ + 
Sbjct: 458 NALLKGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLA 517

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   +   +N++I GLC++++  +A +L +   Q    PD  T   L     ++G MD 
Sbjct: 518 RGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDR 577

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYSSVPI-YNIL 418
             ++L ++E L F  A  +E F   + G    ++     D+  E+  +G S   + Y  L
Sbjct: 578 ASRILNELENLGF--APTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGAL 635

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G++  A  L+ +M    L  N    S  + C    G   EA      ++    
Sbjct: 636 IAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDM 695

Query: 479 VPSVAA--------------------------YNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
           +P ++A                          +N +  GLCK+G I+ A  L+ D L + 
Sbjct: 696 IPDISAPRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLAD-LKDK 754

Query: 513 ASGPTEFKYALTILHVCR-SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
                 F Y+ +++H C  SG  +   ++ + M   G  PN V  +++I G+CK G L  
Sbjct: 755 GFVADNFTYS-SLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSR 813

Query: 572 ARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
           A  +F  L  + +    N I Y+ ++ +H K
Sbjct: 814 AVSLFKKLWTKGI--SPNAITYNTLIDKHCK 842



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 218/486 (44%), Gaps = 52/486 (10%)

Query: 142 AGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           AG+  G    F     L   LS     R+ + +   +   G +   + + E+M+R    P
Sbjct: 186 AGQLDGALQVFDEMRTLGCRLS----MRSCNSILNRLAQTGDLGATVAVFEQMQRAGALP 241

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR-------- 253
           D F    M +     + +   L   EEM K  VE +++AY  ++ G C+ G+        
Sbjct: 242 DKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQTNDARRML 301

Query: 254 -----------------VVRGH----------ELFREMKENG-ILIDRAIYGVLIEGLVG 285
                            +V+G+           + +E+++N  +++D A++G +I G   
Sbjct: 302 DSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQ 361

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
            G++  A  LL ++VDS  + +L +YN +I G C++ +  +A+ +        + PD  +
Sbjct: 362 MGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYS 421

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE 403
            N L+    + G M+  F+    M  L+   AA    +   L G      I  AL ++  
Sbjct: 422 YNSLVDGYCKKGLMNKAFETYNTM--LRNGFAATTLTYNALLKGFCSLGSIDDALRLWFL 479

Query: 404 LKGKGYSSVPIY-NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVES 460
           +  KG +   I  + L+    + G+ +KAL L+ +     L  N+ +F+  I   C +E 
Sbjct: 480 MLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIER 539

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT-EF 519
             + EA E  +K+ +    P +  Y  L  G CKIG++D A  ++ + L N+   PT EF
Sbjct: 540 --MPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNE-LENLGFAPTIEF 596

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             +L   H   + +  K+ ++L EM+  G  PN V   A+I+G CK G L  A  ++  +
Sbjct: 597 FNSLITGHFI-AKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEM 655

Query: 580 RERKLL 585
            E+ L+
Sbjct: 656 IEKGLV 661



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 186/426 (43%), Gaps = 46/426 (10%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E  E+++KM++  C PD+  Y  +        ++D   R+  E++       +  + 
Sbjct: 539 RMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFN 598

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +LI G     +  + +++  EM   G+  +   YG LI G   EG +  A +L  ++++ 
Sbjct: 599 SLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEMIEK 658

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   +L I +S++    R  +FD+A  + +  V  D+ PD S   P L    E+G++ NF
Sbjct: 659 GLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDMIPDISA--PRL----EIGKVANF 712

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422
              +A                                      G  +S+  ++NI++  L
Sbjct: 713 IDTVA-------------------------------------GGNHHSAKIMWNIVIFGL 735

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            ++G ++ A  L   ++      ++ ++S  I     SG +  A +  + ++ +   P++
Sbjct: 736 CKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNI 795

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             YN L  GLCK GE+  A+ L +  L      P    Y   I   C+ G   +  ++  
Sbjct: 796 VTYNSLIYGLCKSGELSRAVSLFKK-LWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQ 854

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
            M +EG  P     S +I+G+C  G +EEA K+   + E  +  + N + Y  ++  +++
Sbjct: 855 RMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNV--DPNYVTYWTLIQGYVR 912

Query: 603 KKTADL 608
            ++ D+
Sbjct: 913 CESVDV 918



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/437 (22%), Positives = 186/437 (42%), Gaps = 56/437 (12%)

Query: 146 KGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           +G+  N  +Y  L   YC  +N           + +++G + E    + K ++ +    V
Sbjct: 307 RGFSPNIVTYTLLVKGYCNEKN-----------MEEAEGVVQE----IRKNKQLVVDEAV 351

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           F   A+I        ++   R+  EM    ++ ++  Y  +I G CK GR+V  H +  E
Sbjct: 352 FG--AVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHE 409

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M   G+  D   Y  L++G   +G + KA +    ++ +G+ A    YN+++ G C +  
Sbjct: 410 MTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGS 469

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            D A +L+ + ++  +AP+  + + LL         D FFK                   
Sbjct: 470 IDDALRLWFLMLKKGIAPNEISCSTLL---------DGFFK------------------- 501

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                GK E+   AL++++E   +G + +   +N ++  L +I  + +A  L  KM+   
Sbjct: 502 ----SGKTEK---ALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWR 554

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
              + +++      + + GD+  A    N++  +   P++  +N L  G   I +    +
Sbjct: 555 CPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNSLITGHF-IAKQHGKV 613

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
             +   + N    P    Y   I   C+ G+      +  EM ++G  PN  ICS+++S 
Sbjct: 614 NDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSC 673

Query: 563 MCKHGTLEEARKVFTNL 579
             + G  +EA  V  NL
Sbjct: 674 FYRKGKFDEANLVLQNL 690



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/419 (21%), Positives = 181/419 (43%), Gaps = 38/419 (9%)

Query: 168 FRAA--DQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV 225
           F AA  D +   + + G++   L++ ++MR   C+  + +  +++  LA   +L A + V
Sbjct: 171 FSAASFDLLLRALANAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLGATVAV 230

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285
           +E+M++     D      +    CK   VV   E   EM + G+ ++   Y  ++ G   
Sbjct: 231 FEQMQRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCE 290

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFS 344
            G+   A  +L  L   G+  ++  Y  ++ G C  K  ++A  +  E+     L  D +
Sbjct: 291 VGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEA 350

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL 404
               ++    +MGRM++  +LL +M   +  V                      ++F   
Sbjct: 351 VFGAVINGYCQMGRMEDAARLLNEMVDSRLQV----------------------NLF--- 385

Query: 405 KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
                    +YNI++    ++G + +A  +  +M G+ +  ++ S++  +  + + G + 
Sbjct: 386 ---------VYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMN 436

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
           +A E +N ++      +   YN L KG C +G ID A+ L    L      P E   +  
Sbjct: 437 KAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKK-GIAPNEISCSTL 495

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
           +    +SG+ EK + +  E    G   N    + +I+G+CK   + EA ++   +++ +
Sbjct: 496 LDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWR 554



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 85/169 (50%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI +   +L  ++      D F Y+++I   +A   +D    + + M    +  +++ Y
Sbjct: 739 GRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTY 798

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI GLCK G + R   LF+++   GI  +   Y  LI+    +G + +A  L + +++
Sbjct: 799 NSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQRMIE 858

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            G    +  Y+ +I GLC     ++A KL +  +++++ P++ T   L+
Sbjct: 859 EGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLI 907



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 103/247 (41%), Gaps = 5/247 (2%)

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392
           V V  + +   ++ + LL   A  G++D   ++  +M  L   ++          + +  
Sbjct: 163 VEVYKEFSFSAASFDLLLRALANAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTG 222

Query: 393 RIMMALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
            +   + VFE+++  G  ++P      I+  A  ++  V  AL    +M  + +EVN ++
Sbjct: 223 DLGATVAVFEQMQRAG--ALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVA 280

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           +   +  + E G   +A    + +      P++  Y  L KG C    ++ A  +V++  
Sbjct: 281 YHAVMNGYCEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIR 340

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
            N      E  +   I   C+ G  E    +LNEM       N  + + +I+G CK G +
Sbjct: 341 KNKQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRM 400

Query: 570 EEARKVF 576
            EA  + 
Sbjct: 401 VEAHNIL 407



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 16/182 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K KG+  +  +Y++L +  S +     A  + + M S G                  P++
Sbjct: 752 KDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVG----------------LTPNI 795

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y ++I  L     L   + +++++    +  + + Y TLI   CK G +    +L + 
Sbjct: 796 VTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQR 855

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M E GI      Y +LI GL  +G + +A  LL  ++++    +   Y ++I G  R + 
Sbjct: 856 MIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCES 915

Query: 324 FD 325
            D
Sbjct: 916 VD 917


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/445 (24%), Positives = 206/445 (46%), Gaps = 26/445 (5%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+++E  ++LE+       P+ F+YT +I     +   D       EM +   + D++ Y
Sbjct: 358 GKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTY 417

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GL   G V     +  +M E G+  D  IY +L+ GL  + K+  A  LL +++D
Sbjct: 418 GALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLD 477

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                D  +Y +++ G  R    D+A KLFE+T++  + P     N ++    + G M +
Sbjct: 478 QSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKD 537

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYNIL 418
               + +M+K    +A D   +   + G  K+  +  A  +F E+ K K   +V  Y  L
Sbjct: 538 AMACINRMKKRH--LAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSL 595

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +      G++ ++L +F +M+   L  N +++SI I    +   +++A     +++    
Sbjct: 596 INGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKC 655

Query: 479 VPSVAAYNCLTKGLCKIG------------EIDAAMMLVRDCLGNVAS---GPTEFKYAL 523
           VP+   +N L  G  K G            E   +M L  +  G + S    P    Y  
Sbjct: 656 VPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQSMFL--NFFGRMISDGWAPRSAAYNS 713

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT-NLRER 582
            ++ +C+ G     +++ N+MT +GC P+ V   A++ G+C  G  +E + + + NL ER
Sbjct: 714 ILICLCQYGMFRTALQLSNKMTSKGCIPDSVSFVALLHGVCLEGRSKEWKNIVSCNLNER 773

Query: 583 KLLTEANTIVYDEILIEHMKKKTAD 607
           +L    N   Y  IL +++ + T++
Sbjct: 774 ELQIAVN---YSSILDQYLPQGTSE 795



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/421 (23%), Positives = 192/421 (45%), Gaps = 9/421 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ E  +++E      C P++  Y  +I     + +++    ++ E+K       V  
Sbjct: 217 EGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVET 276

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G CK G       L  EM   G+ ++  +Y  +I+     G + KA + ++ ++
Sbjct: 277 YGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMI 336

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G + D+  YN++I G CR  +  +A +L E  +   L P+  +  PL+    + G  D
Sbjct: 337 ECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYD 396

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
                L +M +       DL  +   + G      + +AL + E++  +G +    IYNI
Sbjct: 397 RASNWLIEMTERGHK--PDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNI 454

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           LM  L +  ++  A  L  +M   ++  ++  ++  +   + +G++ EA +     IE  
Sbjct: 455 LMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKG 514

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P +  YN + KG CK G +  AM  +   +      P EF Y+  I    +  + +  
Sbjct: 515 MNPGIVGYNAMIKGYCKFGMMKDAMACINR-MKKRHLAPDEFTYSTVIDGYVKQHDLDGA 573

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            ++  EM +  C PN V  +++I+G C+ G L  + K+F  ++   L+   N + Y  IL
Sbjct: 574 QKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLV--PNVVTY-SIL 630

Query: 598 I 598
           I
Sbjct: 631 I 631


>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 789

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 127/487 (26%), Positives = 212/487 (43%), Gaps = 34/487 (6%)

Query: 103 WGPQVVTELSKL-RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           W P     L  L R + P LV  VL+ + +  +A  FF+WA +Q  Y H+   Y  L   
Sbjct: 146 WNPNFEGRLRHLLRSLKPSLVCAVLRSQADERVALNFFYWADRQWRYSHHPLVYYTLLDV 205

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221
           LS+  L + A +V  LM  +G     +E+          P+ F    M+    A + L  
Sbjct: 206 LSKTKLCQGARRVLRLMTRRG-----IEL---------SPEAFG-CVMVSYSRAGK-LRN 249

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
            LRV   M+K  VE ++    T I  L KG ++ +       M+  GI  D   Y  LI+
Sbjct: 250 ALRVLTLMQKAGVEPNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPDIVTYNSLIK 309

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD-DLA 340
           G     ++  A +L+  L   G   D   Y +++G LC+ K+ ++   L E  VQD +L 
Sbjct: 310 GYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLI 369

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV-----AADLEKFFEFLVGK-EERI 394
           PD  T N L+   ++ G  D+    L + E   F +     +A +  F +   G+ +E  
Sbjct: 370 PDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQ--KGRMDEAK 427

Query: 395 MMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
            + +D++          V  Y  ++     +G + +A  +  +M     + N++S++  +
Sbjct: 428 SLVIDMYSR---SCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALL 484

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
                SG  LEA E  N   E    P+   Y  +  G  + G++  A  L R+    V  
Sbjct: 485 NGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREM---VEK 541

Query: 515 G--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           G  PT  +  L I  +C++ +  +  + L E   +GC  N V  + +I G C+ G +E A
Sbjct: 542 GFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAA 601

Query: 573 RKVFTNL 579
             V  ++
Sbjct: 602 LSVLEDM 608



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/403 (21%), Positives = 165/403 (40%), Gaps = 39/403 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E   ++  M    C PDV  YTA++        +D   ++ ++M K   + + ++
Sbjct: 420 KGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVS 479

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ GLC  G+ +   E+    +E+    +   YGV++ G   EGK+ +ACDL +++V
Sbjct: 480 YTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMV 539

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G+       N +I  LC+ ++  +A K  E  +    A +      ++    ++G M+
Sbjct: 540 EKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDME 599

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
               +L  M                +L  K                  +     Y  L  
Sbjct: 600 AALSVLEDM----------------YLSNK------------------HPDAVTYTALFD 625

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           AL + G + +A  L  KM    L+   ++F   I  + + G + +     +++++  + P
Sbjct: 626 ALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWGRVDDMLNLLDRMVK--RKP 683

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC-RSGEAEKIIE 539
               YN + + LC  G ++ A  L+   L   +       + L  +  C + G A    +
Sbjct: 684 FRTIYNHVIEKLCDFGNLEEAEKLLGKVLRTASKLDANTCHVL--MESCLKKGVALSAYK 741

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           V  +M +    P+  +C  +   +   G L EA K+     ER
Sbjct: 742 VACQMFRRNLTPDLKLCEKVTKKLVLDGNLVEADKLMLRFVER 784



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 91/431 (21%), Positives = 175/431 (40%), Gaps = 45/431 (10%)

Query: 181 QGRIAEMLEILEKMRR--NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           + +I ++  ++EKM +  NL  PD   Y  +I +L+   + D  L   +E +      D 
Sbjct: 349 EKKIEQVKCLMEKMVQDSNLI-PDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDK 407

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + Y  ++   C+ GR+     L  +M       D   Y  +++G    G++ +A  +L+ 
Sbjct: 408 VGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQ 467

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +   G + +   Y +++ GLC   +  +A ++  V+ +    P+  T           G 
Sbjct: 468 MYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAIT----------YGV 517

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNI 417
           + + F+                         +E ++  A D+  E+  KG+   P+  N+
Sbjct: 518 VMHGFR-------------------------REGKLSEACDLTREMVEKGFFPTPVEINL 552

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ +L +  +V +A     +       +N ++F+  I    + GD+  A      +   +
Sbjct: 553 LIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLEDMYLSN 612

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
           + P    Y  L   L K G +D A  L+   L      PT   +   I   C+ G  + +
Sbjct: 613 KHPDAVTYTALFDALGKKGRLDEAAELIVKMLSK-GLDPTPVTFRSVIHRYCQWGRVDDM 671

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           + +L+ M +    P   I + +I  +C  G LEEA K+   +       +ANT     +L
Sbjct: 672 LNLLDRMVKR--KPFRTIYNHVIEKLCDFGNLEEAEKLLGKVLRTASKLDANTC---HVL 726

Query: 598 IEHMKKKTADL 608
           +E   KK   L
Sbjct: 727 MESCLKKGVAL 737



 Score = 45.4 bits (106), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 86/187 (45%), Gaps = 1/187 (0%)

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           AL V   ++  G   ++ I N  +  L++  +++KAL    +M+   ++ + ++++  I+
Sbjct: 250 ALRVLTLMQKAGVEPNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPDIVTYNSLIK 309

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
            + +   I +A E    +      P   +Y  +   LCK  +I+    L+   + +    
Sbjct: 310 GYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLI 369

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P +  Y   I  + + G A+  +  L E   +G   ++V  SAI+   C+ G ++EA+ +
Sbjct: 370 PDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSL 429

Query: 576 FTNLRER 582
             ++  R
Sbjct: 430 VIDMYSR 436


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 193/424 (45%), Gaps = 18/424 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E   + ++M    C+P    YT +I+ L     +D    +++EM     + +V  Y
Sbjct: 280 GRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTY 339

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GLC+ G++   + + R+M ++ I      Y  LI G   +G+V  A +LL  +  
Sbjct: 340 TVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEK 399

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              + ++  +N ++ GLCRV +  KA  L +  + + L+PD  + N L+      G M+ 
Sbjct: 400 RACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNT 459

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIY-NIL 418
            +KLL+ M    F +  D   F   +    K+ +  +A      +  KG S   +    L
Sbjct: 460 AYKLLSSMN--CFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTL 517

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  + ++G+ + AL++   +  + +     S ++ +    +   + E      KI ++  
Sbjct: 518 IDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGL 577

Query: 479 VPSVAAYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           VPSV  Y  L  GL + G+I  +     +M +  CL NV      + Y + I  +C+ G 
Sbjct: 578 VPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNV------YPYTIIINGLCQFGR 631

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
            E+  ++L+ M   G  PN V  + ++ G   +G L+ A +    + ER    E N  +Y
Sbjct: 632 VEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGY--ELNDRIY 689

Query: 594 DEIL 597
             +L
Sbjct: 690 SSLL 693



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 140/610 (22%), Positives = 246/610 (40%), Gaps = 93/610 (15%)

Query: 48  PHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPI-ARFITDAFRKNQFQWGPQ 106
           P+     +++    H  PN  +Q          LQR  + I  RF     + + + + P 
Sbjct: 52  PNWEKNSSLKSLVSHMNPNVASQ-------VISLQRSDNDICVRFFMWVCKHSSYCFDPT 104

Query: 107 VVTELSKL----------RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYN 156
              +L KL            V   L+ E  + E         F    +  G++ N+  Y+
Sbjct: 105 QKNQLLKLIVSSGLYRVAHAVIVALIKECSRCEKEMLKLMYCFDELREVFGFRLNYPCYS 164

Query: 157 ALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP--------------- 201
           +L   L++ +L   A      M++ G +  M++    +   LCK                
Sbjct: 165 SLLMSLAKLDLGFLAYVTYRRMEADGFVVGMID-YRTIVNALCKNGYTEAAEMFMSKILK 223

Query: 202 -----DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA-DVMAYVTLIMGLCKGGRVV 255
                D    T+++       NL   L+V++ M K++  A + ++Y  LI GLC+ GR+ 
Sbjct: 224 IGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLE 283

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
               L  +M E G       Y VLI+ L   G + KA +L  +++  G + ++  Y  +I
Sbjct: 284 EAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLI 343

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            GLCR  + ++A  +    V+D + P   T N L+    + GR+   F+LL  MEK   +
Sbjct: 344 DGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKR--A 401

Query: 376 VAADLEKFFEFL-----VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVK 429
              ++  F E +     VGK  +   A+ + + +   G S  +  YN+L+  L   G + 
Sbjct: 402 CKPNVRTFNELMEGLCRVGKPYK---AVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMN 458

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESG--DILEAC--ECHNKIIEMSQVPSVAAY 485
            A  L   M   ++E + L+F+  I    + G  D+  A       K I + +V      
Sbjct: 459 TAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTT-- 516

Query: 486 NCLTKGLCKIGEIDAAM-----------------------MLVRDC-----------LGN 511
             L  G+CK+G+   A+                       ML + C           +  
Sbjct: 517 --LIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINK 574

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
           +   P+   Y   +  + RSG+      +L  M   GC PN    + II+G+C+ G +EE
Sbjct: 575 LGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEE 634

Query: 572 ARKVFTNLRE 581
           A K+ + +++
Sbjct: 635 AEKLLSAMQD 644



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 107/511 (20%), Positives = 207/511 (40%), Gaps = 75/511 (14%)

Query: 112 SKLRRVTPDLVAEVLKVE-NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRA 170
           S +  + P++ ++V+ ++ ++  +  +FF W  K   Y  +    N L   +  + L+R 
Sbjct: 62  SLVSHMNPNVASQVISLQRSDNDICVRFFMWVCKHSSYCFDPTQKNQLLKLIVSSGLYRV 121

Query: 171 ADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK 230
           A  V            ++ ++++  R                   E+ +   +  ++E++
Sbjct: 122 AHAV------------IVALIKECSR------------------CEKEMLKLMYCFDELR 151

Query: 231 KDL-VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
           +      +   Y +L+M L K       +  +R M+ +G ++    Y  ++  L   G  
Sbjct: 152 EVFGFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYT 211

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD-DLAPDFSTVNP 348
             A   +  ++  G+  D  I  S++ G CR      A K+F+V  ++   AP+  + + 
Sbjct: 212 EAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSI 271

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
           L+    E+GR++  F L  QM +                                   KG
Sbjct: 272 LIHGLCEVGRLEEAFGLKDQMGE-----------------------------------KG 296

Query: 409 YS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
              S   Y +L+ AL + G + KA  LF +M     + N  ++++ I      G I EA 
Sbjct: 297 CQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEAN 356

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
               K+++    PSV  YN L  G CK G +  A  L+   +   A  P    +   +  
Sbjct: 357 GVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELL-TVMEKRACKPNVRTFNELMEG 415

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           +CR G+  K + +L  M   G  P+ V  + +I G+C+ G +  A K+ +++    +  E
Sbjct: 416 LCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDI--E 473

Query: 588 ANTIVYDEILIEHMKKKTADLVLSGLKFFGL 618
            + + +  I+    K+  AD+  +   F GL
Sbjct: 474 PDCLTFTAIINAFCKQGKADVASA---FLGL 501



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 76/145 (52%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           + +++    ++ E L +L K+ +    P V  YT ++  L    ++    R+ E MK   
Sbjct: 552 ILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSG 611

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
              +V  Y  +I GLC+ GRV    +L   M+++G+  +   Y V+++G V  GK+ +A 
Sbjct: 612 CLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRAL 671

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGL 318
           + ++ +V+ GY  +  IY+S++ G 
Sbjct: 672 ETVRAMVERGYELNDRIYSSLLQGF 696


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 184/423 (43%), Gaps = 8/423 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +   + +++ M     KP +  Y ++++ L      D    V+  M    V  DV ++
Sbjct: 208 GDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSF 267

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G C+ G +      ++EM+   +  D   +  LI      G++  A + L+++ +
Sbjct: 268 NMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMRE 327

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D  IY  +IGG CR     +A ++ +  V     PD  T N LL    +  R+ +
Sbjct: 328 FGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSD 387

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
             +LL +M++    V  DL  F   + G  ++  I  AL  F+ +  +     +  YN L
Sbjct: 388 AEELLNEMKER--GVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTL 445

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  +   G++ KA  L+  M    +  N +++SI I  H E G +  A    ++++    
Sbjct: 446 IDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGI 505

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           VP++  YN + KG C+ G +      +   + +    P    Y   I    + G+  +  
Sbjct: 506 VPNIMTYNSIIKGYCRSGNVSKGQQFLPK-MRHDKVMPDLITYNTLIHGYVKEGKMHEAF 564

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
            +L  M  E   P+ V  + IISG   HG ++EA  V+  +  R +  E +   Y  ++ 
Sbjct: 565 NLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGI--EPDRYTYMSMIN 622

Query: 599 EHM 601
            H+
Sbjct: 623 GHV 625



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 176/383 (45%), Gaps = 10/383 (2%)

Query: 225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
           V  EM+K  V  DV+ +  ++    + G V     L   M   GI      Y  +++GL+
Sbjct: 181 VISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLL 240

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
             G+  KA ++ + +   G   D+  +N +IGG CR  + ++A + ++      + PD  
Sbjct: 241 RNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVV 300

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVF 401
           + + L+      G MD+  + L +M +  F +  D    +  ++G   +   ++ AL V 
Sbjct: 301 SFSCLIGLFTRRGEMDHAAEYLREMRE--FGLMPD-GVIYTMVIGGFCRAGLMLEALRVR 357

Query: 402 EELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
           +E+   G    V  YN L+  L +   +  A  L  +M+   +  +  +F+  I  +   
Sbjct: 358 DEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRD 417

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
           G+I +A +  + I +    P +  YN L  G+C+ G++  A  L  D + +    P    
Sbjct: 418 GNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDD-MHSREIFPNHVT 476

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           Y++ I   C  G+ +     L+EM  +G  PN +  ++II G C+ G + + ++    +R
Sbjct: 477 YSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMR 536

Query: 581 ERKLLTEANTIVYDEILIEHMKK 603
             K++   + I Y+ ++  ++K+
Sbjct: 537 HDKVM--PDLITYNTLIHGYVKE 557



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 114/486 (23%), Positives = 200/486 (41%), Gaps = 42/486 (8%)

Query: 100 QFQWGPQVVTELSKLRRVTPDLVAEVLKVEN----NPTLASKFFHWAGKQKGYKHNFASY 155
           QF     V++E+ K R V PD+V   + V+         A+     +   KG K    +Y
Sbjct: 174 QFGEVDTVISEMEK-RCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTY 232

Query: 156 NALAYCLSRNNLFRAADQVPELMDS-------------------QGRIAEMLEILEKMRR 196
           N++   L RN  +  A +V   MD+                    G + E L   ++MR 
Sbjct: 233 NSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRG 292

Query: 197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
               PDV +++ +I +      +D       EM++  +  D + Y  +I G C+ G ++ 
Sbjct: 293 RRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLE 352

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
              +  EM   G L D   Y  L+ GL  E ++  A +LL ++ + G   DL  + ++I 
Sbjct: 353 ALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIH 412

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK----- 371
           G CR    +KA + F+      L PD  T N L+      G +    +L   M       
Sbjct: 413 GYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFP 472

Query: 372 --LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEV 428
             + +S+  D          ++ ++  A    +E+  KG   ++  YN ++      G V
Sbjct: 473 NHVTYSILIDSH-------CEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNV 525

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PSVAAYNC 487
            K      KMR   +  + ++++  I  +V+ G + EA     KI+E   V P    YN 
Sbjct: 526 SKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLL-KIMENENVQPDAVTYNM 584

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           +  G    G +  A  + +  +G     P  + Y   I     +G ++K  ++ +EM Q+
Sbjct: 585 IISGFSVHGNMQEADWVYKK-MGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQK 643

Query: 548 GCPPNE 553
           G  P++
Sbjct: 644 GLAPDD 649



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 160/374 (42%), Gaps = 39/374 (10%)

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           E +      ++   CK  +      +  EM++  +  D   + V+++     G V  A  
Sbjct: 156 EVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMA 215

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           L+  +V  G +  L  YNS++ GL R  ++DKA ++F       +APD  + N L+    
Sbjct: 216 LIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIG--- 272

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVP 413
                              F  A +LE+              AL  ++E++G+  +  V 
Sbjct: 273 ------------------GFCRAGELEE--------------ALRFYKEMRGRRVTPDVV 300

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            ++ L+G     GE+  A     +MR   L  + + +++ I     +G +LEA    +++
Sbjct: 301 SFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEM 360

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           +    +P V  YN L  GLCK   +  A  L+ + +      P    +   I   CR G 
Sbjct: 361 VAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNE-MKERGVPPDLCTFTTLIHGYCRDGN 419

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
            EK ++  + ++ +   P+ V  + +I GMC+ G L +A +++ ++  R++    N + Y
Sbjct: 420 IEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIF--PNHVTY 477

Query: 594 DEILIEHMKKKTAD 607
             ++  H +K   D
Sbjct: 478 SILIDSHCEKGQVD 491



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 137/316 (43%), Gaps = 9/316 (2%)

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
             D  + ++ S    +    N ++   C+  QF +   +     +  + PD  T N ++ 
Sbjct: 143 TADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVD 202

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY 409
                G ++    L+  M  +   +   L  +   L G  +  R   A +VF  +   G 
Sbjct: 203 ARFRAGDVEAAMALIDSM--VSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGV 260

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           +  V  +N+L+G     GE+++AL  + +MRG  +  + +SFS  I      G++  A E
Sbjct: 261 APDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAE 320

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
              ++ E   +P    Y  +  G C+ G +  A+  VRD +      P    Y   +  +
Sbjct: 321 YLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALR-VRDEMVAFGCLPDVVTYNTLLNGL 379

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C+        E+LNEM + G PP+    + +I G C+ G +E+A + F  + +++L  + 
Sbjct: 380 CKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPD- 438

Query: 589 NTIVYDEILIEHMKKK 604
             IV    LI+ M ++
Sbjct: 439 --IVTYNTLIDGMCRQ 452


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 194/422 (45%), Gaps = 37/422 (8%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
             + +E + ++++M +  C+P++  Y  ++  L    ++D    +  +M+   +EADV+ 
Sbjct: 127 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 186

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + T+I  LCK   V     LF+EM+  GI  +   Y  LI  L   G+   A  LL D++
Sbjct: 187 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 246

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +     +L  +N++I    +  +F +A KL +  ++  + PD  T N L+          
Sbjct: 247 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLI---------- 296

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
           N F +  +++K K        + FEF+V K        D F +L          YN L+ 
Sbjct: 297 NGFCMHDRLDKAK--------QMFEFMVSK--------DCFPDLD--------TYNTLIK 332

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              +   V+    LF +M    L  ++++++  IQ     GD   A +   +++     P
Sbjct: 333 GFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPP 392

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            +  Y+ L  GLC  G+++ A+  V D +         + Y   I  +C++G+ +   ++
Sbjct: 393 DIMTYSILLDGLCNNGKLEKALE-VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 451

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
              ++ +G  PN V  + +ISG+C    L+EA  +   ++E   L ++ T  Y+ ++  H
Sbjct: 452 FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGT--YNTLIRAH 509

Query: 601 MK 602
           ++
Sbjct: 510 LR 511



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 164/367 (44%), Gaps = 6/367 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I     +L KM     + DV  +  +I  L   R++D  L +++EM+   +  +V+ 
Sbjct: 162 RGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVT 221

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI  LC  GR     +L  +M E  I  +   +  LI+  V EGK  +A  L  D++
Sbjct: 222 YSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMI 281

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 D+  YNS+I G C   + DKA ++FE  V  D  PD  T N L+    +  R++
Sbjct: 282 KRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVE 341

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNI 417
           +  +L  +M      +  D   +   + G   +     A  VF+++   G    +  Y+I
Sbjct: 342 DGTELFREMSHR--GLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 399

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L   G+++KAL +F  M+   ++++   ++  I+   ++G + +  +    +    
Sbjct: 400 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 459

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P+V  YN +  GLC    +  A  L++  +      P    Y   I    R G+    
Sbjct: 460 VKPNVVTYNTMISGLCSKRLLQEAYALLKK-MKEDGPLPDSGTYNTLIRAHLRDGDKAAS 518

Query: 538 IEVLNEM 544
            E++ EM
Sbjct: 519 AELIREM 525



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 142/345 (41%), Gaps = 55/345 (15%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------PELMD---------SQGRI 184
           + KG + N  +Y++L  CL     +  A Q+          P L+           +G+ 
Sbjct: 211 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKF 270

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  ++ + M +    PD+F Y ++I        LD   +++E M       D+  Y TL
Sbjct: 271 VEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 330

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK  RV  G ELFREM   G++ D   Y  LI+GL  +G    A  + K +V  G 
Sbjct: 331 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 390

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  Y+ ++ GLC   + +KA ++F+   + ++  D      ++    + G++D+   
Sbjct: 391 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDD--- 447

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
                                             D+F  L  KG   +V  YN ++  L 
Sbjct: 448 --------------------------------GWDLFCSLSLKGVKPNVVTYNTMISGLC 475

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
               +++A  L  KM+      +S +++  I+ H+  GD   + E
Sbjct: 476 SKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAE 520



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 95/192 (49%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ +  E+  +M       D   YT +I+ L  + + D   +V+++M  D V  D+M Y 
Sbjct: 339 RVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYS 398

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            L+ GLC  G++ +  E+F  M+++ I +D  IY  +IEG+   GKV    DL   L   
Sbjct: 399 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 458

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + ++  YN++I GLC  +   +AY L +   +D   PD  T N L+      G     
Sbjct: 459 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAAS 518

Query: 363 FKLLAQMEKLKF 374
            +L+ +M   +F
Sbjct: 519 AELIREMRSCRF 530



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 98/215 (45%), Gaps = 12/215 (5%)

Query: 389 GKEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKK-----ALYLFGKMRGLN 442
           GK+ ++  A+ +F  + K +   S+  +N L+ A   I ++KK     +L L GKM  L 
Sbjct: 18  GKDLKLDDAIGLFGGMVKSRPLPSIFEFNKLLSA---IAKMKKFDLVISLALLGKMMKLG 74

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
            E + ++ S  +  +     I +A    ++++EM   P    +  L  GL    +   A+
Sbjct: 75  YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV 134

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            LV D +      P    Y + +  +C+ G+ +    +LN+M       + VI + II  
Sbjct: 135 ALV-DRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDS 193

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +CK+  +++A  +F  +  + +    N + Y  ++
Sbjct: 194 LCKYRHVDDALNLFKEMETKGI--RPNVVTYSSLI 226



 Score = 42.4 bits (98), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           E M   G++ +  ++   +     KP+V  Y  MI  L ++R L     + ++MK+D   
Sbjct: 437 EGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL 496

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            D   Y TLI    + G      EL REM+    + D +  G L+  ++ +G++ K+
Sbjct: 497 PDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG-LVANMLHDGRLDKS 552


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 178/370 (48%), Gaps = 8/370 (2%)

Query: 228 EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGE 286
           E+ + +   + + Y T+I G C  GRV    ++ REM+E  GI  ++  YG +I G    
Sbjct: 509 ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 568

Query: 287 GKVGKACDLLKDLVDSG-YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           G+V +A  +  +++  G  + +  +YN++IGG C   + D A    +  V+  +A   +T
Sbjct: 569 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 628

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE 403
            N L+      GR    ++L+ +M      +A D+  +   + G  KE  +  AL++FE 
Sbjct: 629 YNLLVHALFMDGRGTEAYELVEEMGGK--GLAPDVFTYNILINGHCKEGNVKKALEIFEN 686

Query: 404 LKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
           +  +G  ++V  Y  L+ AL + G+V++   LF +     +  + + ++  I  H  SG+
Sbjct: 687 MSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGN 746

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
           I  A E   ++ +    P    YN L +GLC +G +D A  L+ D +      P    Y 
Sbjct: 747 IDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLI-DEMTERGIQPDLVTYN 805

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             I      G+ +  + + NEM  +G  P  +  +A+I G+CK+G  ++A  +   + E 
Sbjct: 806 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 865

Query: 583 KLLTEANTIV 592
            +  + +T +
Sbjct: 866 GITPDDSTYI 875



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 150/331 (45%), Gaps = 35/331 (10%)

Query: 182 GRIAEMLEILEKM-RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           GR+ E +++ ++M  +   KP+   Y A+I     +  LD  L   + M +  V   V  
Sbjct: 569 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 628

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+  L   GR    +EL  EM   G+  D   Y +LI G   EG V KA ++ +++ 
Sbjct: 629 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 688

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G RA +  Y ++I  L +  Q  +  KLF+  V+  + PD    N L+   +  G +D
Sbjct: 689 RRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNID 748

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
             F+++ +MEK +  +A D                   DV              YN LM 
Sbjct: 749 RAFEIMGEMEKKR--IAPD-------------------DV-------------TYNTLMR 774

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L  +G V +A  L  +M    ++ + ++++  I  +   GD+ +A    N+++     P
Sbjct: 775 GLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 834

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
           ++  YN L +GLCK G+ D A  +V++ + N
Sbjct: 835 TLLTYNALIQGLCKNGQGDDAENMVKEMVEN 865



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 98/201 (48%), Gaps = 16/201 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G +    +Y AL Y LS+                +G++ E  ++ ++  R   +PD+ 
Sbjct: 689 RRGVRATVVTYTALIYALSK----------------KGQVQETDKLFDEAVRRGIRPDLV 732

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y A+I   +   N+D    +  EM+K  +  D + Y TL+ GLC  GRV    +L  EM
Sbjct: 733 LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM 792

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            E GI  D   Y  LI G   +G V  A  +  ++++ G+   L  YN++I GLC+  Q 
Sbjct: 793 TERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQG 852

Query: 325 DKAYKLFEVTVQDDLAPDFST 345
           D A  + +  V++ + PD ST
Sbjct: 853 DDAENMVKEMVENGITPDDST 873



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 154/356 (43%), Gaps = 48/356 (13%)

Query: 244 LIMGLCKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           ++  LC  G+  R  EL R+M + N +      Y  +I G    G+V  A D+++++ + 
Sbjct: 494 MLRHLCSAGKPARALELLRQMPRPNAV-----TYNTVIAGFCSRGRVQAALDIMREMRER 548

Query: 303 GYRA-DLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           G  A +   Y ++I G C+V + D+A K+F E+  + ++ P+    N L+    + G++D
Sbjct: 549 GGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLD 608

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
                  +M +   ++           +  + R   A ++ EE+ GKG +  V  YNIL+
Sbjct: 609 TALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILI 668

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               + G VKKAL +F  M    +    ++++  I    + G + E  +  ++ +     
Sbjct: 669 NGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIR 728

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P +  YN L       G ID A                                     E
Sbjct: 729 PDLVLYNALINSHSTSGNIDRA------------------------------------FE 752

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIV 592
           ++ EM ++   P++V  + ++ G+C  G ++EARK+   + ER +   L   NT++
Sbjct: 753 IMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLI 808



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 16/231 (6%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G     A+YN L + L               MD  GR  E  E++E+M      PDVF
Sbjct: 619 ERGVAMTVATYNLLVHAL--------------FMD--GRGTEAYELVEEMGGKGLAPDVF 662

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  +I     E N+   L ++E M +  V A V+ Y  LI  L K G+V    +LF E 
Sbjct: 663 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEA 722

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              GI  D  +Y  LI      G + +A +++ ++       D   YN+++ GLC + + 
Sbjct: 723 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 782

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
           D+A KL +   +  + PD  T N L+   +  G + +  ++  +M    F+
Sbjct: 783 DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFN 833



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 5/261 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG++   L   ++M        V  Y  ++  L  +        + EEM    +  DV  
Sbjct: 604 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 663

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK G V +  E+F  M   G+      Y  LI  L  +G+V +   L  + V
Sbjct: 664 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAV 723

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G R DL +YN++I         D+A+++     +  +APD  T N L+     +GR+D
Sbjct: 724 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 783

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYS-SVPIYNI 417
              KL+ +M +    +  DL  +   + G   +  +  AL +  E+  KG++ ++  YN 
Sbjct: 784 EARKLIDEMTER--GIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNA 841

Query: 418 LMGALLEIGEVKKALYLFGKM 438
           L+  L + G+   A  +  +M
Sbjct: 842 LIQGLCKNGQGDDAENMVKEM 862



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 5/163 (3%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           S+PI    +  LL       A  LF  M  L L + + +F+I ++    +G    A E  
Sbjct: 452 SLPISTASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALE-- 509

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
             ++     P+   YN +  G C  G + AA+ ++R+        P ++ Y   I   C+
Sbjct: 510 --LLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCK 567

Query: 531 SGEAEKIIEVLNEMTQEG-CPPNEVICSAIISGMCKHGTLEEA 572
            G  ++ ++V +EM  +G   P  V+ +A+I G C  G L+ A
Sbjct: 568 VGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTA 610



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 54/105 (51%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E  +++++M     +PD+  Y  +I   + + ++   LR+  EM        ++ Y
Sbjct: 780 GRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTY 839

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
             LI GLCK G+      + +EM ENGI  D + Y  LIEGL  E
Sbjct: 840 NALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 884


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 174/392 (44%), Gaps = 39/392 (9%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+   +T +I+ L  +  +   L   + +     + D + Y TLI GLCK G      +L
Sbjct: 125 PNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDL 184

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
            R +  N +  +  +Y  +I+G+  +  V  A DL  ++V  G   ++  Y+++I G   
Sbjct: 185 LRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFT 244

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           V Q   A  LF   + +++ PD  T N L+    + G+M                     
Sbjct: 245 VGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKM--------------------- 283

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM-- 438
                    KE + + A+ + + +K     +V  Y  LM     + EV KA  +   M  
Sbjct: 284 ---------KEGKTVFAMMMKQGIK----PNVVTYCSLMDGYCLVKEVNKAKSILYTMSQ 330

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
           RG+N ++ S +  I   C ++  D  EA     ++     +P V  YN L  GLCK+G+I
Sbjct: 331 RGVNPDIQSYNILIDGFCKIKKVD--EAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKI 388

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
             A+ LV D + +    P    Y+  +  +C++ + +K I +L ++  +G  PN    + 
Sbjct: 389 SYALKLV-DEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTI 447

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +I G+CK G LE+A  +F +L  +      NT
Sbjct: 448 LIDGLCKGGRLEDAHNIFEDLLVKGYNITVNT 479



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 173/395 (43%), Gaps = 37/395 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G     L++L ++  NL +P+V  Y+ +I  +  +++++    ++ EM    +  +V+ Y
Sbjct: 176 GETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTY 235

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G    G++    +LF +M    I  D   + +L++G   +GK+ +   +   ++ 
Sbjct: 236 SALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMK 295

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + ++  Y S++ G C VK+ +KA  +     Q  + PD  + N L+         D 
Sbjct: 296 QGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILI---------DG 346

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMG 420
           F K+                          +++  A+++F+E+  K     V  YN L+ 
Sbjct: 347 FCKI--------------------------KKVDEAMNLFKEMHHKHIIPDVVTYNSLID 380

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L ++G++  AL L  +M    +  + +++S  +    ++  + +A     K+ +    P
Sbjct: 381 GLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRP 440

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           ++  Y  L  GLCK G ++ A  +  D L       T   Y + I   C  G  ++ + +
Sbjct: 441 NMYTYTILIDGLCKGGRLEDAHNIFEDLLVK-GYNITVNTYTVMIHGFCNKGLFDEALAL 499

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           L++M    C P+ V    II  +      ++A K+
Sbjct: 500 LSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAEKL 534



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 19/215 (8%)

Query: 141 WAGKQKGYKHNFASYNAL--AYCLSRN-----NLFRAADQ---VPELMDSQ--------- 181
           +   Q+G   +  SYN L   +C  +      NLF+       +P+++            
Sbjct: 326 YTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKL 385

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+I+  L+++++M      PD+  Y++++  L     +D  + +  ++K   +  ++  Y
Sbjct: 386 GKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTY 445

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GLCKGGR+   H +F ++   G  I    Y V+I G   +G   +A  LL  + D
Sbjct: 446 TILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKD 505

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
           +    D   Y  II  L    + DKA KL E+  +
Sbjct: 506 NSCIPDAVTYEIIIRSLFDKDENDKAEKLREMITR 540



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
           M   P+   +  L KGLC  G+I  A +L  D +  +     +  Y   I  +C+ GE  
Sbjct: 121 MGYHPNTITFTTLIKGLCLKGQIHQA-LLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETR 179

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
             +++L  +      PN V+ S II GMCK   + +A  +++ +  + +    N + Y  
Sbjct: 180 AALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGI--SPNVVTYSA 237

Query: 596 IL 597
           ++
Sbjct: 238 LI 239


>gi|307135890|gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 566

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 191/429 (44%), Gaps = 6/429 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ +    LE M     KPDVF  T ++  L     +   ++V E M    +  D  +Y 
Sbjct: 77  RLTDAFFHLEFMVEKGQKPDVFQATQLLYDLCKACKMRKAIKVMEMMIGSGIIPDASSYT 136

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            L+  LC+ G V    +L  +M+E G   +   Y  L+ GL   G + ++  LL  L+  
Sbjct: 137 FLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGNLTQSLQLLDRLIQK 196

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   +   Y+ ++    + +  D+A KL +  +     P+  + N LL    + GR ++ 
Sbjct: 197 GLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVSYNVLLTGLCKEGRTEDA 256

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
            +L  ++    FS            +  E R   A  +  E+ G   S S   YNIL+G+
Sbjct: 257 IRLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDERSPSTVTYNILIGS 316

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L   G  + AL +  +M     +  + S++  I    + G +    +C ++++     P+
Sbjct: 317 LALHGRTEHALEVLEEMIRARFKPTASSYNPIIAHLCKDGKLDLVVKCLDQMMYRHCNPN 376

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
              YN +   LC+ G +  A  +++  LGN     T+  Y + I  +CR G      ++L
Sbjct: 377 EGTYNAIAT-LCEEGMVQEAFSIIQS-LGNKQHSSTQEFYKIVITSLCRKGNTYPAFQLL 434

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
            EMT+ G  P+    S++I G+C  G L EA ++F+ + E     + +T  Y+ +++   
Sbjct: 435 YEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENN---KPDTENYNSLILGCC 491

Query: 602 KKKTADLVL 610
           K +  DL L
Sbjct: 492 KSRRTDLAL 500



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 169/402 (42%), Gaps = 20/402 (4%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ GY  N  +YN+L   L                   G + + L++L+++ +    P+ 
Sbjct: 159 EEYGYPTNTVTYNSLVRGLCM----------------HGNLTQSLQLLDRLIQKGLVPNA 202

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           + Y+ ++     ER  D   ++ +E+     E ++++Y  L+ GLCK GR      LFRE
Sbjct: 203 YTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVSYNVLLTGLCKEGRTEDAIRLFRE 262

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +   G   +   Y +L+  L  EG+  +A  LL ++           YN +IG L    +
Sbjct: 263 LPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDERSPSTVTYNILIGSLALHGR 322

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            + A ++ E  ++    P  S+ NP++    + G++D   K L QM     +        
Sbjct: 323 TEHALEVLEEMIRARFKPTASSYNPIIAHLCKDGKLDLVVKCLDQMMYRHCNPNEGTYNA 382

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSV-PIYNILMGALLEIGEVKKALYLFGKMRGLN 442
              L  +E  +  A  + + L  K +SS    Y I++ +L   G    A  L  +M    
Sbjct: 383 IATLC-EEGMVQEAFSIIQSLGNKQHSSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYG 441

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
              +S ++S  I+     G + EA E  + ++E +  P    YN L  G CK    D A+
Sbjct: 442 FTPDSFTYSSLIRGLCMEGMLNEAIEIFS-VMEENNKPDTENYNSLILGCCKSRRTDLAL 500

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
            +    +G     P E  Y + +  +    E +   +VL E+
Sbjct: 501 DVFEIMVGK-GYLPNETTYTILVEGIIHEKEMDLATKVLREL 541


>gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula]
 gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 738

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 136/606 (22%), Positives = 244/606 (40%), Gaps = 125/606 (20%)

Query: 109 TELSKLRRVTPD---LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALA-----Y 160
           T+ SK+    P+   ++ ++   +NNP+LA  +F     Q G+ HN  +Y ++      Y
Sbjct: 49  TKPSKISSFEPNTFKILQKLYLYQNNPSLAYSYFTQLKNQHGFSHNIQTYTSIIRILCYY 108

Query: 161 CLSR-------------------------NNLFRAADQVPE---LMD----------SQG 182
            L R                         ++LF   + V E   L +          SQ 
Sbjct: 109 NLDRKLDSLFLDIIDHSKQDPCFEINVLFDSLFEGVNDVNEDHYLFNAFNGFVKACVSQN 168

Query: 183 RIAEMLEILEKMRRN----------------LCKPDV--------------------FAY 206
              E ++ L + R+N                L K D                     + Y
Sbjct: 169 MFVEAIDFLLQTRKNVVILPNILSFNFLINRLVKHDEVDMALCLFVRFKSFGLIFNEYTY 228

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           T +I+ L  + + +  +RV++EMK+  V+ D   Y T I GLCK  R   G+ + ++ + 
Sbjct: 229 TIVIKALCKKGDWENVVRVFDEMKEAGVDDDSYCYATFIEGLCKNNRSDLGYAVLQDYRT 288

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
               + +  Y  +I G   E K+ +A  +  ++   G   D+ +Y +++ G C  + FDK
Sbjct: 289 RNAHVHKYAYTAVIRGFCNETKLDEAESVFLEMEKQGLVPDVYVYCALVHGYCNSRNFDK 348

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR----MDNF------------------FK 364
           A  +++  +   +  +    + +L C  EMGR    +D F                  F 
Sbjct: 349 ALAVYKSMISRGIKTNCVIFSCILHCLDEMGRALEVVDMFEEFKESGLFIDRKAYNILFD 408

Query: 365 LLAQMEKLKFSVA-----------ADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS- 410
            L ++ K+  +V             D++ +   + G   + + + A  +F+E++ +G+  
Sbjct: 409 ALCKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGKPIEAQSLFKEMEERGFKP 468

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            V  YN+L           +A+ L   M    +E NS +  I I+    +G + EA E  
Sbjct: 469 DVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGLCSAGKVEEAEEFF 528

Query: 471 NKIIEMSQVPSVAAYNCLTKGLC------KIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
           N +   S   SV  Y  L  G C      K  E+  A +L+R  L  +   P++  Y+  
Sbjct: 529 NWLKGESVEISVEIYTALVNGYCEAALIEKSHELKEAFILLRTML-EMNMKPSKVMYSKI 587

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
              +C +G  E    + N     G  P+ V  + +I+G CK   L EA ++F +++ER +
Sbjct: 588 FTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNCLPEAHELFKDMKERGI 647

Query: 585 LTEANT 590
             +A T
Sbjct: 648 TPDAVT 653



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/425 (22%), Positives = 184/425 (43%), Gaps = 45/425 (10%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++ ++ E   +  +M +    PDV+ Y A++      RN D  L V++ M    ++ + +
Sbjct: 307 NETKLDEAESVFLEMEKQGLVPDVYVYCALVHGYCNSRNFDKALAVYKSMISRGIKTNCV 366

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            +  ++  L + GR +   ++F E KE+G+ IDR  Y +L + L   GKV  A  +L +L
Sbjct: 367 IFSCILHCLDEMGRALEVVDMFEEFKESGLFIDRKAYNILFDALCKLGKVDDAVGMLDEL 426

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
                  D+  Y ++I G     +  +A  LF+   +    PD    N L          
Sbjct: 427 KSMQLDVDMKHYTTLINGYFLQGKPIEAQSLFKEMEERGFKPDVVAYNVLAA-------- 478

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
             FF+     E                          A+D+   ++ +G   +   + I+
Sbjct: 479 -GFFRNRTDFE--------------------------AMDLLNYMESQGVEPNSTTHKII 511

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE------SGDILEACECHNK 472
           +  L   G+V++A   F  ++G ++E++   ++  +  + E      S ++ EA      
Sbjct: 512 IEGLCSAGKVEEAEEFFNWLKGESVEISVEIYTALVNGYCEAALIEKSHELKEAFILLRT 571

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           ++EM+  PS   Y+ +   LC  G ++ A  L  +   +    P    Y + I   C++ 
Sbjct: 572 MLEMNMKPSKVMYSKIFTALCCNGNMEGAHTLF-NLFIHTGFTPDAVTYTIMINGYCKTN 630

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
              +  E+  +M + G  P+ V  + +I+G CK   L EA ++F +++ER +  + + I 
Sbjct: 631 CLPEAHELFKDMKERGITPDAVTYTIMINGYCKMNCLREAHELFKDMKERGI--KPDVIA 688

Query: 593 YDEIL 597
           Y  I+
Sbjct: 689 YTVII 693



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/361 (20%), Positives = 147/361 (40%), Gaps = 52/361 (14%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +D  GR  E++++ E+ + +    D  AY  +   L     +D  + + +E+K   ++ D
Sbjct: 375 LDEMGRALEVVDMFEEFKESGLFIDRKAYNILFDALCKLGKVDDAVGMLDELKSMQLDVD 434

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL------------------ 279
           +  Y TLI G    G+ +    LF+EM+E G   D   Y VL                  
Sbjct: 435 MKHYTTLINGYFLQGKPIEAQSLFKEMEERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLN 494

Query: 280 -----------------IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
                            IEGL   GKV +A +    L        + IY +++ G C   
Sbjct: 495 YMESQGVEPNSTTHKIIIEGLCSAGKVEEAEEFFNWLKGESVEISVEIYTALVNGYCEAA 554

Query: 323 QFDKAYKLFEVTV------QDDLAPD---FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
             +K+++L E  +      + ++ P    +S +   L C   M      F L        
Sbjct: 555 LIEKSHELKEAFILLRTMLEMNMKPSKVMYSKIFTALCCNGNMEGAHTLFNLFIHT---- 610

Query: 374 FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKK 430
                D   +   + G  K   +  A ++F+++K +G +   + Y I++    ++  +++
Sbjct: 611 -GFTPDAVTYTIMINGYCKTNCLPEAHELFKDMKERGITPDAVTYTIMINGYCKMNCLRE 669

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A  LF  M+   ++ + +++++ I+  + SG    A + +N++I+M   P      C+ K
Sbjct: 670 AHELFKDMKERGIKPDVIAYTVIIKGLLNSGHTEIAFQLYNEMIDMGMTPGATLKRCIQK 729

Query: 491 G 491
            
Sbjct: 730 A 730



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 15/209 (7%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
           A +FF+W  K +  + +   Y AL   YC        AA     L++    + E   +L 
Sbjct: 524 AEEFFNWL-KGESVEISVEIYTALVNGYC-------EAA-----LIEKSHELKEAFILLR 570

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
            M     KP    Y+ +   L    N++    ++          D + Y  +I G CK  
Sbjct: 571 TMLEMNMKPSKVMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTN 630

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
            +   HELF++MKE GI  D   Y ++I G      + +A +L KD+ + G + D+  Y 
Sbjct: 631 CLPEAHELFKDMKERGITPDAVTYTIMINGYCKMNCLREAHELFKDMKERGIKPDVIAYT 690

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
            II GL      + A++L+   +   + P
Sbjct: 691 VIIKGLLNSGHTEIAFQLYNEMIDMGMTP 719



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/264 (20%), Positives = 103/264 (39%), Gaps = 25/264 (9%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           +++G+K +  +YN LA    RN     A  +   M+SQG                   ++
Sbjct: 462 EERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGLCSAGKV 521

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIR------VLAAERNLDACLRVWEEMKKDLVEADV 238
            E  E    ++    +  V  YTA++       ++     L     +   M +  ++   
Sbjct: 522 EEAEEFFNWLKGESVEISVEIYTALVNGYCEAALIEKSHELKEAFILLRTMLEMNMKPSK 581

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + Y  +   LC  G +   H LF      G   D   Y ++I G      + +A +L KD
Sbjct: 582 VMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNCLPEAHELFKD 641

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           + + G   D   Y  +I G C++    +A++LF+   +  + PD      ++      G 
Sbjct: 642 MKERGITPDAVTYTIMINGYCKMNCLREAHELFKDMKERGIKPDVIAYTVIIKGLLNSGH 701

Query: 359 MDNFFKLLAQMEKLKFSVAADLEK 382
            +  F+L  +M  +  +  A L++
Sbjct: 702 TEIAFQLYNEMIDMGMTPGATLKR 725


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 124/504 (24%), Positives = 224/504 (44%), Gaps = 42/504 (8%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEMLEIL 191
           N  +YNAL   L +N  F  AD++ + M  +G                    I + L + 
Sbjct: 337 NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLF 396

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           +KMR    K  V+ Y ++I     + +LD    +   M K+ +     +Y  LI GLC+ 
Sbjct: 397 DKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRN 456

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           G +    EL REM E GI  +   +  LI G   + K+ +A  L   ++DS    +   +
Sbjct: 457 GDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTF 516

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N +I G C V    KA++L++  V+  L PD  T   L+        +    + +A +E 
Sbjct: 517 NVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLEN 576

Query: 372 L-----KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
                  FS+ A L   F     +E R      +++E+  +G    +  + I++ A L+ 
Sbjct: 577 SYAVLNNFSLTALLYGLF-----REGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQ 631

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
            + +K+  LF +M+   ++ + + ++  I    +  ++++A  C ++++     P+   +
Sbjct: 632 HDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTH 691

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
             L   LCK G + +A +L ++ L GNV   P +F Y   + +    G+ EK  ++ + M
Sbjct: 692 TVLINNLCKSGYLGSAELLCKEMLAGNVL--PNKFTYNCFLDYFATEGDMEKAKDLHSAM 749

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
            Q G   + V  + +I G+CK G ++EA  +   + E       + I Y  I+ E  K  
Sbjct: 750 LQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGF--SPDCISYSTIIHELCKMG 806

Query: 605 TADLVLSGLKFFGLESKLKAKGCK 628
             +      K F L +++  KG K
Sbjct: 807 DIN------KAFELWNEMLYKGLK 824



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/460 (22%), Positives = 191/460 (41%), Gaps = 43/460 (9%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++ +KM ++    D + YTA IR     RNLD    +   M+ + V+A  + Y  L+ GL
Sbjct: 184 DLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGL 243

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY---- 304
           CK  RV    E+   M   G+  D   Y  L+ G     ++  A  +  D++  G+    
Sbjct: 244 CKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSE 303

Query: 305 -------------------------RADLGI------YNSIIGGLCRVKQFDKAYKLFEV 333
                                      DLG+      YN++I  LC+ ++FD A +LF+ 
Sbjct: 304 ANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKE 363

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KE 391
                L P+  T   L+    + G +++   L  +M      V   +  +   + G  K+
Sbjct: 364 MAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVT--VYPYNSLINGYCKQ 421

Query: 392 ERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
             +  A  +   +  +G + +   Y+ L+  L   G++  A+ L  +M    +  N+ +F
Sbjct: 422 GSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTF 481

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +  I    +   + EA    +K+I+ + +P+   +N + +G C +G I  A  L  D + 
Sbjct: 482 TALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLY-DQMV 540

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
            +   P  + Y   I  +C +    K  E + ++       N    +A++ G+ + G   
Sbjct: 541 EMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGRFT 600

Query: 571 EARKVFTNLRER--KLLTEANTIVYDEILIEHMKKKTADL 608
           E   ++  +  R  KL   + TI+    L +H K+K+  L
Sbjct: 601 ETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVL 640



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 155/345 (44%), Gaps = 6/345 (1%)

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           ++  L K  +     +LF +M ++G+ +D  +Y   I        +  A  L+  +   G
Sbjct: 169 ILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEG 228

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            +A    YN ++ GLC+  +  +A ++  V V   +  D  T   L+     M  ++   
Sbjct: 229 VKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMAL 288

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGAL 422
           ++   M +L F  +     F    + K+E +  A  +  +L   G   +V  YN L+  L
Sbjct: 289 RITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKL 348

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            +      A  LF +M G  LE N ++++I I    + G I +A    +K+ +     +V
Sbjct: 349 CKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTV 408

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEV 540
             YN L  G CK G +D A  L+    G V  G  PT   Y+  I  +CR+G+    +E+
Sbjct: 409 YPYNSLINGYCKQGSLDRARGLLS---GMVKEGLTPTAASYSPLIAGLCRNGDLSSAMEL 465

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
             EM + G   N    +A+I+G CK   ++EA ++F  + +  ++
Sbjct: 466 HREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVI 510



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 111/264 (42%), Gaps = 40/264 (15%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +  +M+    KPD   YT MI  L+ E N+   L  W++M  D    + + +  LI  LC
Sbjct: 640 LFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLC 699

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYG-------------------------------- 277
           K G +     L +EM    +L ++  Y                                 
Sbjct: 700 KSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVS 759

Query: 278 --VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
             +LI+GL   GK+ +A DL++ + +SG+  D   Y++II  LC++   +KA++L+   +
Sbjct: 760 FNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEML 819

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM 395
              L PD    N  +  C   G  D    +   M  ++  V  + + +   L G    +M
Sbjct: 820 YKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNM--IRSGVQPNWDTYRALLSGIS--LM 875

Query: 396 MALDVFEELKG-KGYSSVPIYNIL 418
           +  D F   +G K Y  + +Y ++
Sbjct: 876 LHYD-FSCFRGTKQYIQISVYELM 898



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 141/326 (43%), Gaps = 10/326 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I +  ++ ++M     KPD + Y ++I  L     +        +++      +  + 
Sbjct: 527 GNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSL 586

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GL + GR    + L+ EM   G+ +D   + +++   + +    K+C L +++ +
Sbjct: 587 TALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKE 646

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + D   Y  +I  L + +   +A   ++  V D  +P+  T   L+    + G + +
Sbjct: 647 QGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGS 706

Query: 362 FFKLLAQMEK-----LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN 416
              L  +M        KF+    L+ F       E  +  A D+   +     +S+  +N
Sbjct: 707 AELLCKEMLAGNVLPNKFTYNCFLDYF-----ATEGDMEKAKDLHSAMLQGHLASIVSFN 761

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+  L + G++++A+ L  K+       + +S+S  I    + GDI +A E  N+++  
Sbjct: 762 ILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYK 821

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAM 502
              P V AYN   +     GE D A+
Sbjct: 822 GLKPDVVAYNIFIRWCNVHGESDKAL 847



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 125/290 (43%), Gaps = 2/290 (0%)

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           + SG   +    + I+  L +++QF  A  LF+  +Q  +  D       +    E   +
Sbjct: 155 LSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNL 214

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNIL 418
           D    L+ +ME      +A       + + K  R+  A++V   +   G ++  + Y  L
Sbjct: 215 DGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTL 274

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +     + E++ AL +   M  L    +  + S  I    +   + EA     K+ ++  
Sbjct: 275 VYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM 334

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           VP+V AYN L   LCK    D A  L ++  G     P E  YA+ I  +C+ G  E  +
Sbjct: 335 VPNVFAYNALIDKLCKNERFDDADRLFKEMAGR-GLEPNEVTYAILIHALCKRGMIEDAL 393

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
            + ++M  +G        +++I+G CK G+L+ AR + + + +  L   A
Sbjct: 394 CLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTA 443



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 106/226 (46%), Gaps = 9/226 (3%)

Query: 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
            L V  E +G   S+VP YN+LM  L +   V++A+ +   M  + +  + +++   +  
Sbjct: 219 GLVVRMESEGVKASAVP-YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYG 277

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASG 515
                ++  A    + +I +  VPS A  + +   L K   ++ A  L   C LG++   
Sbjct: 278 FCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLA--CKLGDLGMV 335

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P  F Y   I  +C++   +    +  EM   G  PNEV  + +I  +CK G +E+A  +
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 576 FTNLRERKLLTEANTIVYDEILIEHMKKKTADL---VLSGLKFFGL 618
           F  +R++ +  +     Y+ ++  + K+ + D    +LSG+   GL
Sbjct: 396 FDKMRDKGI--KVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGL 439


>gi|12320851|gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]
          Length = 802

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 121/480 (25%), Positives = 210/480 (43%), Gaps = 23/480 (4%)

Query: 103 WGPQVVTELSKL-RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           W P+   ++  L R + P  V  VL+ +++  +A KFF+WA +Q  Y+H+   Y ++   
Sbjct: 157 WNPKHEGQMRNLLRSLKPSQVCAVLRSQDDERVALKFFYWADRQWRYRHDPMVYYSMLEV 216

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221
           LS+  L + + +V  LM  +G           + R    P+ F+   M+    A +  DA
Sbjct: 217 LSKTKLCQGSRRVLVLMKRRG-----------IYRT---PEAFS-RVMVSYSRAGQLRDA 261

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
            L+V   M++  VE +++   T I    +  R+ +       M+  GI+ +   Y  +I 
Sbjct: 262 -LKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIR 320

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD-LA 340
           G     +V +A +LL+D+   G   D   Y +I+G LC+ K+  +   L +   ++  L 
Sbjct: 321 GYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLV 380

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400
           PD  T N L+    +    D     L   ++  F +           + KE R+  A D+
Sbjct: 381 PDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDL 440

Query: 401 FEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
             E+       V  Y  ++     +GEV KA  L   M     + N++S++  +     +
Sbjct: 441 INEMDCP--PDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRT 498

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-CLGNVASGPTEF 519
           G  LEA E  N   E    P+   Y+ +  GL + G++  A  +VR+  L     GP E 
Sbjct: 499 GKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEI 558

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
              L  L  CR G   +  + + E   +GC  N V  + +I G C++  L+ A  V  ++
Sbjct: 559 NLLLQSL--CRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDM 616



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/445 (20%), Positives = 185/445 (41%), Gaps = 56/445 (12%)

Query: 138 FFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRN 197
           +F    ++KG++ +   Y+A+ + L +                +GR++E  +++ +M   
Sbjct: 404 WFLKDAQEKGFRIDKLGYSAIVHALCK----------------EGRMSEAKDLINEMD-- 445

Query: 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
            C PDV  YTA++        +D   ++ + M     + + ++Y  L+ G+C+ G+ +  
Sbjct: 446 -CPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEA 504

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
            E+    +E+    +   Y V++ GL  EGK+ +ACD+++++V  G+       N ++  
Sbjct: 505 REMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQS 564

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
           LCR  +  +A K  E  +    A +      ++    +   +D    +L  M        
Sbjct: 565 LCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDM-------- 616

Query: 378 ADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGK 437
                   +L+ K        DVF             Y  L+  L + G + +A  L  K
Sbjct: 617 --------YLINKHA------DVF------------TYTTLVDTLGKKGRIAEATELMKK 650

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M    ++   +++   I  + + G + +      K+I   +  ++  YN + + LC +G+
Sbjct: 651 MLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMISRQKCRTI--YNQVIEKLCVLGK 708

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           ++ A  L+   L   +    +  YAL   ++ + G      +V   M      P+  +C 
Sbjct: 709 LEEADTLLGKVLRTASRSDAKTCYALMEGYL-KKGVPLSAYKVACRMFNRNLIPDVKMCE 767

Query: 558 AIISGMCKHGTLEEARKVFTNLRER 582
            +   +   G ++EA K+   L ER
Sbjct: 768 KLSKRLVLKGKVDEADKLMLRLVER 792


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/489 (24%), Positives = 206/489 (42%), Gaps = 45/489 (9%)

Query: 165 NNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCK----PDVFAYTAMIRVLAAERNLD 220
           N +  A  + P         A  +E+ ++M R  C     P +  Y  +I         D
Sbjct: 134 NGILAALARAPPSAACGDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPD 193

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280
             L +   + K+ +  D  +Y +LI G  K G V + H LF EM E G+L    I   +I
Sbjct: 194 LGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSII 252

Query: 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
           + L    ++ KA  +++ +VDSG   DL  Y+ II GLC+ K  DKA ++ E  V+    
Sbjct: 253 KELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTR 312

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400
           P+  T N L+   +  G  +   ++  QM         D    F   + K  R   A  +
Sbjct: 313 PNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCI 372

Query: 401 FEE--LKG------------KGYSSVP------------------------IYNILMGAL 422
           F+   LKG             GY++                          ++NIL+ A 
Sbjct: 373 FDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAY 432

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
              G + KA+ +F  M+   +  ++++F+  I      G + +A    N ++++   PS 
Sbjct: 433 ARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSE 492

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
           A Y CL +G C  GE+  A  L+ + +      P    ++  I ++C+ G   +  ++++
Sbjct: 493 AVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMD 552

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
            M Q G  PN V  ++++ G C  G +EEA  +   +    +  E N  +Y  ++  + K
Sbjct: 553 MMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGI--EPNCYIYGTLVDGYCK 610

Query: 603 KKTADLVLS 611
               D  L+
Sbjct: 611 NGRIDDALT 619



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 173/412 (41%), Gaps = 7/412 (1%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           +A++  I   M      P+   +  +I   A    +D  + ++E+M+   +  D + + T
Sbjct: 403 LADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 462

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I  LC+ GR+      F  M + G+    A+YG LI+G    G++ KA +L+ ++++  
Sbjct: 463 VISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKD 522

Query: 304 Y-RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
                +  ++SII  LC+  +  +   + ++ VQ    P+  T N L+     +G M+  
Sbjct: 523 IPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEA 582

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGA 421
           F LL  M  +       +         K  RI  AL VF ++  KG     + Y+I++  
Sbjct: 583 FALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHG 642

Query: 422 LLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
           L +      A  +F +M   G  + +++    +   C     D  EA     K+  M+  
Sbjct: 643 LFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTD--EANMLLEKLFAMNVK 700

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
             +  +N +   + K+G    A  L  D +      P    Y++ I ++ +    E+   
Sbjct: 701 FDIITFNIVISAMFKVGRRQEAKELF-DAISTYGLVPNIQTYSMMITNLIKEESYEEADN 759

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           +   + + G   +  + + I+  +     + +A    + + E  L  EA+TI
Sbjct: 760 LFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNLTLEASTI 811



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 142/315 (45%), Gaps = 28/315 (8%)

Query: 161 CLSRNNLFRAADQVPELMDS-------------------QGRIAEMLEILEKMRRNLCKP 201
           C +   L +A + + E+M+                    +GR+AE  +I++ M +   +P
Sbjct: 502 CCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRP 561

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +V  + +++       N++    + + M    +E +   Y TL+ G CK GR+     +F
Sbjct: 562 NVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVF 621

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           R+M   G+     +Y +++ GL    +   A  +  ++++SG    +  Y  ++GGLCR 
Sbjct: 622 RDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRN 681

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
              D+A  L E     ++  D  T N ++    ++GR     +L   +    + +  +++
Sbjct: 682 NCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAIS--TYGLVPNIQ 739

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKKA---LYLF 435
            +   +    KEE    A ++F  ++  G++S   + N ++  LL   EV KA   L + 
Sbjct: 740 TYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSII 799

Query: 436 GKMRGLNLEVNSLSF 450
           G+   L LE +++S 
Sbjct: 800 GE-NNLTLEASTISL 813



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 101/276 (36%), Gaps = 54/276 (19%)

Query: 145 QKGYKHNFASYNAL--AYCLSRN--NLFRAADQVPE------------LMDS---QGRIA 185
           Q G + N  ++N+L   YCL  N    F   D +              L+D     GRI 
Sbjct: 556 QTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRID 615

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + L +   M     KP    Y+ ++  L   R   A  +++ EM +      +  Y  ++
Sbjct: 616 DALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVL 675

Query: 246 MGLCKG-----------------------------------GRVVRGHELFREMKENGIL 270
            GLC+                                    GR     ELF  +   G++
Sbjct: 676 GGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLV 735

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
            +   Y ++I  L+ E    +A +L   +  SG+ +D  + N I+  L    +  KA   
Sbjct: 736 PNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNY 795

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
             +  +++L  + ST++ L    +  G+     KLL
Sbjct: 796 LSIIGENNLTLEASTISLLASLFSREGKYREHIKLL 831


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/403 (25%), Positives = 180/403 (44%), Gaps = 8/403 (1%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           V + +  +G +AE   +  +M+   C PDV  + ++I        LD   ++ EEM++  
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG 253

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
            +ADV+ Y  LI   CK GR+   +  F  MK  G++ +   +   ++    EG V +A 
Sbjct: 254 CKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAM 313

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            L   +   G   +   Y  +I G C+  + D A  L +  V+  +  +  T   L+   
Sbjct: 314 KLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGL 373

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFF---EFLVGKEERIMMALDVFEELKGKGYS 410
            +  ++     +L  MEK        L        F+    E+   AL +  E+K KG  
Sbjct: 374 CKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEK---ALGLLSEMKNKGLE 430

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
             + +Y  L+  L  + ++ +A  L  KM    LE N + ++  +    +SG + EA   
Sbjct: 431 LDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAM 490

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
             KI++    P+V  Y  L  GLCK G ID A+      + ++   P    Y   +  +C
Sbjct: 491 LQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNK-MRDLGLDPNVQAYTALVDGLC 549

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           ++G   + +++ NEM  +G   ++V+ +A++ G  K G L +A
Sbjct: 550 KNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDA 592



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/448 (22%), Positives = 182/448 (40%), Gaps = 54/448 (12%)

Query: 144 KQKGYKHNFASYNALAYC----------------LSRNNLFRAADQVPELMDS---QGRI 184
           ++ G K +  +YNAL  C                + R  +          +D+   +G +
Sbjct: 250 RRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLV 309

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E +++  +MR      + F YT +I        LD  + + +EM +  V  +V+ Y  L
Sbjct: 310 REAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVL 369

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + GLCK  +V    ++ R M++ G+  +  +Y  LI G        KA  LL ++ + G 
Sbjct: 370 VDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGL 429

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+ +Y ++I GLC V + D+A  L     +  L P++     ++  C + G++     
Sbjct: 430 ELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIA 489

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE 424
           +L ++          L+  F+                         +V  Y  L+  L +
Sbjct: 490 MLQKI----------LDSGFQ------------------------PNVITYCALIDGLCK 515

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G + +A+  F KMR L L+ N  +++  +    ++G + EA +  N+++          
Sbjct: 516 AGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVV 575

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y  L  G  K G +  A  L +  + +       F Y   I   C      +  EV +EM
Sbjct: 576 YTALLDGYLKQGNLHDAFAL-KAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEM 634

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEA 572
              G  P+  + + +IS   K G LEEA
Sbjct: 635 IGHGIAPDRAVYNCLISKYQKLGNLEEA 662



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 201/437 (45%), Gaps = 22/437 (5%)

Query: 157 ALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE 216
           ALA    R+ L    D +  ++  +G + + +  + ++R     P+      ++  LA +
Sbjct: 111 ALALGPRRSALASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARD 170

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
           R+     R++E+    L   +V  +  +I  LCK G +     LF  MKE G L D   +
Sbjct: 171 RSGRLVRRLFEQ----LPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTF 226

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
             LI+G    G++ +   L++++  SG +AD+  YN++I   C+  + + AY  F    +
Sbjct: 227 NSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKR 286

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEER 393
           + +  +  T +  +    + G +    KL AQM     ++    E  +  L+    K  R
Sbjct: 287 EGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALN---EFTYTCLIDGTCKAGR 343

Query: 394 IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           +  A+ + +E+  +G   +V  Y +L+  L +  +V +A  +   M    +  N L ++ 
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 453 AIQCHVESGDILEA----CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
            I  H  + +  +A     E  NK +E+     ++ Y  L +GLC + ++D A  L+   
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLEL----DISLYGALIQGLCNVHKLDEAKSLLTK- 458

Query: 509 LGNVASGPTEFKYALTILHVC-RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
           +      P    Y  T++  C +SG+  + I +L ++   G  PN +   A+I G+CK G
Sbjct: 459 MDESGLEPNYIIYT-TMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAG 517

Query: 568 TLEEARKVFTNLRERKL 584
           +++EA   F  +R+  L
Sbjct: 518 SIDEAISHFNKMRDLGL 534



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 106/199 (53%), Gaps = 3/199 (1%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           +MD+    G++ E + +L+K+  +  +P+V  Y A+I  L    ++D  +  + +M+   
Sbjct: 474 MMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLG 533

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           ++ +V AY  L+ GLCK G +    +LF EM   G+ +D+ +Y  L++G + +G +  A 
Sbjct: 534 LDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAF 593

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            L   ++DSG + DL  Y   I G C +    +A ++F   +   +APD +  N L+   
Sbjct: 594 ALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKY 653

Query: 354 AEMGRMDNFFKLLAQMEKL 372
            ++G ++    L  +ME++
Sbjct: 654 QKLGNLEEAISLQDEMERV 672



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 170/391 (43%), Gaps = 45/391 (11%)

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMA--YVTLIMGLCKGGRVVRGHELFREMKE 266
           ++ VLA    LD  +R    +++  V  +     ++ L +   + GR+VR   LF ++  
Sbjct: 128 LLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVR--RLFEQLPA 185

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
             +      + ++I+ L  EG++ +A  L   + + G   D+  +NS+I G  +  + D+
Sbjct: 186 PNVFT----FNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDE 241

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
             +L E   +     D  T N L+ C  + GRM+  +   A M                 
Sbjct: 242 VEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAM----------------- 284

Query: 387 LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
              K E +M              ++V  ++  + A  + G V++A+ LF +MR   + +N
Sbjct: 285 ---KREGVM--------------ANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALN 327

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
             +++  I    ++G + +A    ++++      +V  Y  L  GLCK  ++  A  ++R
Sbjct: 328 EFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLR 387

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
             +        E  Y   I     +  +EK + +L+EM  +G   +  +  A+I G+C  
Sbjct: 388 -MMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNV 446

Query: 567 GTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             L+EA+ + T + E  L  E N I+Y  ++
Sbjct: 447 HKLDEAKSLLTKMDESGL--EPNYIIYTTMM 475



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 77/184 (41%), Gaps = 44/184 (23%)

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N  +F+I I    + G++ EA    +++ EM  +P V  +N L  G  K GE+D      
Sbjct: 187 NVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELD------ 240

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
                                      E E+++E   EM + GC  + V  +A+I+  CK
Sbjct: 241 ---------------------------EVEQLVE---EMRRSGCKADVVTYNALINCFCK 270

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAK 625
            G +E A   F  ++   ++  AN + +   +    K+    LV   +K F   ++++ +
Sbjct: 271 FGRMETAYGYFAAMKREGVM--ANVVTFSTFVDAFCKE---GLVREAMKLF---AQMRVR 322

Query: 626 GCKL 629
           G  L
Sbjct: 323 GMAL 326


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 182/390 (46%), Gaps = 8/390 (2%)

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M R+   P+V+ Y  +IR   +   L   L  + EM+++    +V+ Y TLI   CK GR
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           +     L + M   G+  +   Y V+I GL  EG + +A ++L+++   G+  D   YN+
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           ++ G C+   F +A  +    V++ ++P   T   L+     M +  N  + +   ++++
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALI---NSMCKARNLNRAMEFFDQMR 177

Query: 374 FSVAADLEKFFEFLVGKEER---IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVK 429
                  E+ +  L+    R   +  A  +  E+   G+S SV  YN  +     +  ++
Sbjct: 178 IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERME 237

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
           +AL +  +M    L  + +S+S  I      G++  A +   +++E    P    Y+ L 
Sbjct: 238 EALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLI 297

Query: 490 KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
           +GLC++  +  A  L ++ L ++   P EF Y   I   C  G+  K + + +EM  +G 
Sbjct: 298 QGLCEMRRLTEACDLSQEML-DMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGF 356

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            P+ V  S +I+G+ K     EA+++   L
Sbjct: 357 LPDAVTYSVLINGLNKQARTREAKRLLFKL 386



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 117/462 (25%), Positives = 194/462 (41%), Gaps = 37/462 (8%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            KG + N  SYN +   L R                +G + E  EILE+M      PD  
Sbjct: 73  SKGMQPNLISYNVIINGLCR----------------EGSMKEAWEILEEMGYKGFTPDEV 116

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  ++     E N    L +  EM ++ V   V+ Y  LI  +CK   + R  E F +M
Sbjct: 117 TYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQM 176

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           +  G+  +   Y  LI+G   +G + +A  +L ++ +SG+   +  YN+ I G C +++ 
Sbjct: 177 RIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERM 236

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           ++A  + +  V+  LAPD  + + ++      G +D  F++  +M  ++  V+ D   + 
Sbjct: 237 EEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEM--VEKGVSPDAVTYS 294

Query: 385 EFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGL 441
             + G  +  R+  A D+ +E+   G       Y  L+ A    G++ KAL+L  +M   
Sbjct: 295 SLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHK 354

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY-----NC--------- 487
               +++++S+ I    +     EA     K+I    VPS   Y     NC         
Sbjct: 355 GFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVV 414

Query: 488 -LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L KG C  G +  A   V + +      P E  Y + I   CR G   K   +  EM  
Sbjct: 415 ALIKGFCMKGLMHEADR-VFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIH 473

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
            G  P+ V    +I  + K G  EE  +V  +      L EA
Sbjct: 474 SGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEA 515



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/441 (23%), Positives = 197/441 (44%), Gaps = 23/441 (5%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G + + L    +M RN C P+V  Y  +I        +D    + + M    ++ +++
Sbjct: 22  SVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLI 81

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y  +I GLC+ G +    E+  EM   G   D   Y  L+ G   EG   +A  +  ++
Sbjct: 82  SYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM 141

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V +G    +  Y ++I  +C+ +  ++A + F+      L P+  T   L+   +  G +
Sbjct: 142 VRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLL 201

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYN 416
           +  +++L +M +  FS    +  +  F+ G    ER+  AL V +E+  KG +  V  Y+
Sbjct: 202 NEAYRILNEMTESGFS--PSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYS 259

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++      GE+ +A  +  +M    +  +++++S  IQ   E   + EAC+   ++++M
Sbjct: 260 TIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDM 319

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P    Y  L    C  G+++ A+ L  D + +    P    Y++ I  + +     +
Sbjct: 320 GLPPDEFTYTTLINAYCVEGDLNKALHL-HDEMIHKGFLPDAVTYSVLINGLNKQARTRE 378

Query: 537 IIEVLNEMTQEGCPPNEVI-------CS--------AIISGMCKHGTLEEARKVFTNLRE 581
              +L ++  E   P++V        CS        A+I G C  G + EA +VF ++ E
Sbjct: 379 AKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVE 438

Query: 582 RKLLTEANTIVYDEILIEHMK 602
           R    +    VY+ I+  H +
Sbjct: 439 RN--HKPGEAVYNVIIHGHCR 457


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 189/418 (45%), Gaps = 46/418 (11%)

Query: 200 KPDVFAYTAMIRVLA-AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           K DV   ++++R L  A+R  +A   ++  M +     D ++Y T++  +C  GR     
Sbjct: 135 KADVIVVSSLLRGLCDAKRTDEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWAL 194

Query: 259 ELFREM--KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
           ++ R    +  G   +  +Y  ++ GL  EGKVG+ACDL  ++   G   ++  YNS+I 
Sbjct: 195 DILRMAVKQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIH 254

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-EKLKFS 375
            LC+ +  DKA  +    V + + PD  T N L+   + +G+     ++  +M  +    
Sbjct: 255 ALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIP 314

Query: 376 VAADLEKFFEFLVGKEERIMMALDVFEELKGKG-------YSS----------------- 411
                  F  FL  K  RI  A + F+ +  KG       YS+                 
Sbjct: 315 NTVTCSTFVAFLC-KHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNL 373

Query: 412 ---------VP---IYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCH 457
                    VP   ++NIL+    + G V++A+++F  M  RGLN +V  L++   I   
Sbjct: 374 FNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDV--LTYLAVIHAF 431

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
              G + +A +  N +I+    P+ A Y CL +G C  G++  A  LV + + N   GP 
Sbjct: 432 CRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYE-IRNKGLGPC 490

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
              +A  I H+C+ G   +   + + + + G   +  I +++I G C  G + EA +V
Sbjct: 491 ILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRV 548



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 175/381 (45%), Gaps = 30/381 (7%)

Query: 146 KGYKHNFASYNAL------AYCL-SRNNLFRAADQ---VPE------LMDSQ---GRIAE 186
           KG+K N  SY+ L      A CL   +NLF    +   VP       L++     G + E
Sbjct: 345 KGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVRE 404

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
            + I E M++    PDV  Y A+I       ++D  +  +  M    VE +   Y  LI 
Sbjct: 405 AMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQ 464

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           G C  G +V+  EL  E++  G+      +  LI  L  EG+V +A  +   ++ +G +A
Sbjct: 465 GFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKA 524

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D+ I+ S+I G C + +  +A+++ +  V   + PD  T   L+  C + GR+D+   L 
Sbjct: 525 DVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILF 584

Query: 367 AQM-----EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
            ++     +   F+    L+  F        R   A ++F+E+   G + ++P Y+IL+ 
Sbjct: 585 RELLHKGVKPTTFTYGIILDGLFH-----AGRTAAAKEMFQEMIESGIAVTIPTYSILLT 639

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L      ++A+ +F K+  +N++ + +  +I I    ++    EA      I +   VP
Sbjct: 640 GLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVP 699

Query: 481 SVAAYNCLTKGLCKIGEIDAA 501
           +V  Y  + + L K G ++ A
Sbjct: 700 TVQTYTIMMENLIKEGSVEEA 720



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 110/452 (24%), Positives = 192/452 (42%), Gaps = 31/452 (6%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKM 194
           A   FH    Q+G   N  +YN++ + L +    RA D+      +QG       IL +M
Sbjct: 230 ACDLFHEM-TQQGVPPNVVTYNSVIHALCKA---RAVDK------AQG-------ILRQM 272

Query: 195 RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
             N  +PD   Y  +I   +        +R+++EM    V  + +   T +  LCK GR+
Sbjct: 273 VGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRI 332

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
               E F  M   G  ++   Y  L+ G    G +    +L   +V  G   +  ++N +
Sbjct: 333 EEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNIL 392

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN----FFKLLAQME 370
           + G  +     +A  +FE   +  L PD  T   ++     MG MD+    F  ++ +  
Sbjct: 393 VNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGV 452

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVK 429
           +  F+V   L + F         ++ A ++  E++ KG     + +  L+  L + G V 
Sbjct: 453 EPNFAVYQCLIQGF----CTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVF 508

Query: 430 KALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           +A  +F  +   G   +VN  +  I   C +  G + EA   H+ ++ +   P +  Y  
Sbjct: 509 EAQRIFDMIIRTGEKADVNIFTSLIDGYCLI--GKMSEAFRVHDAMVSVGIEPDIVTYGT 566

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L  G CK G ID  ++L R+ L +    PT F Y + +  +  +G      E+  EM + 
Sbjct: 567 LVNGCCKNGRIDDGLILFRELL-HKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIES 625

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           G        S +++G+C++   EEA  VF  L
Sbjct: 626 GIAVTIPTYSILLTGLCRNNCTEEAITVFQKL 657



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 149/344 (43%), Gaps = 30/344 (8%)

Query: 115 RRVTPDLVAEVLKVENNPTLAS------KFFHWAGKQKGYKHNFASYNAL--AYCLSRNN 166
           R + PD++  +  +     + S      KF H     KG + NFA Y  L   +C +  +
Sbjct: 415 RGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMI--DKGVEPNFAVYQCLIQGFC-THGD 471

Query: 167 LFRAADQVPELMDS------------------QGRIAEMLEILEKMRRNLCKPDVFAYTA 208
           L +A + V E+ +                   +GR+ E   I + + R   K DV  +T+
Sbjct: 472 LVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTS 531

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           +I        +    RV + M    +E D++ Y TL+ G CK GR+  G  LFRE+   G
Sbjct: 532 LIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKG 591

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
           +      YG++++GL   G+   A ++ +++++SG    +  Y+ ++ GLCR    ++A 
Sbjct: 592 VKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAI 651

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
            +F+     ++  D   +N ++    +  R +    L A +                  +
Sbjct: 652 TVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENL 711

Query: 389 GKEERIMMALDVFEELKGKGYSSVPIY-NILMGALLEIGEVKKA 431
            KE  +  A  VF  +   G S    + N+++  LLE GE+ KA
Sbjct: 712 IKEGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVKA 755


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/448 (23%), Positives = 205/448 (45%), Gaps = 43/448 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
             + +E + ++++M +  C+P++  Y  ++  L    + D  L +  +M+   +EADV+ 
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + T+I  LCK   V     LF+EM+  GI  +   Y  LI  L   G+   A  LL D++
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +     +L  +N++I    +  +F +A KL++  ++  + PD  T N L+          
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLV---------- 372

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
           N F +  +++K K        + FEF+V K        D F +        V  YN L+ 
Sbjct: 373 NGFCMHDRLDKAK--------QMFEFMVSK--------DCFPD--------VVTYNTLIK 408

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              +   V+    LF +M    L  ++++++  IQ     GD   A +   +++     P
Sbjct: 409 GFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPP 468

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            +  Y+ L  GLC  G+++ A+  V D +         + Y   I  +C++G+ +   ++
Sbjct: 469 DIMTYSILLDGLCNNGKLEKALE-VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 527

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
              ++ +G  PN V  + +ISG+C    L+EA  +   ++E   L  + T  Y+ ++  H
Sbjct: 528 FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGT--YNTLIRAH 585

Query: 601 M----KKKTADLV--LSGLKFFGLESKL 622
           +    K  +A+L+  +   +F G  S +
Sbjct: 586 LRDGDKAASAELIREMRSCRFVGDASTI 613



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 168/387 (43%), Gaps = 16/387 (4%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P +  +  ++  +A  +  D  + + E+M++  +   +  Y  LI   C+  ++     L
Sbjct: 83  PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             +M + G          L+ G     ++  A  L+  +V+ GYR D   + ++I GL  
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             +  +A  L +  VQ    P+  T   ++    + G  D    LL +ME  K  + AD+
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK--IEADV 260

Query: 381 EKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             F   +  + K   +  AL++F+E++ KG   +V  Y+ L+  L   G    A  L   
Sbjct: 261 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 320

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M    +  N ++F+  I   V+ G  +EA + ++ +I+ S  P +  YN L  G C    
Sbjct: 321 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDR 380

Query: 498 IDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           +D A      M+ +DC  +V +      Y   I   C+S   E   E+  EM+  G   +
Sbjct: 381 LDKAKQMFEFMVSKDCFPDVVT------YNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 434

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNL 579
            V  + +I G+   G  + A+KVF  +
Sbjct: 435 TVTYTTLIQGLFHDGDCDNAQKVFKQM 461



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 143/345 (41%), Gaps = 55/345 (15%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------PELMD---------SQGRI 184
           + KG + N  +Y++L  CL     +  A Q+          P L+           +G+ 
Sbjct: 287 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKF 346

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  ++ + M +    PD+F Y +++        LD   +++E M       DV+ Y TL
Sbjct: 347 VEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK  RV  G ELFREM   G++ D   Y  LI+GL  +G    A  + K +V  G 
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  Y+ ++ GLC   + +KA ++F+   + ++  D      ++    + G++D+   
Sbjct: 467 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDD--- 523

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
                                             D+F  L  KG   +V  YN ++  L 
Sbjct: 524 --------------------------------GWDLFCSLSLKGVKPNVVTYNTMISGLC 551

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
               +++A  L  KM+      NS +++  I+ H+  GD   + E
Sbjct: 552 SKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAE 596



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 96/211 (45%), Gaps = 3/211 (1%)

Query: 404 LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
           +K +   S+  +N L+ A+ ++ +    + L  KM+ L +     +++I I C      I
Sbjct: 77  VKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQI 136

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
             A     K++++   PS+   + L  G C    I  A+ LV D +  +   P    +  
Sbjct: 137 SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALV-DQMVEMGYRPDTITFTT 195

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I  +    +A + + +++ M Q GC PN V    +++G+CK G  + A  +   +   K
Sbjct: 196 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK 255

Query: 584 LLTEANTIVYDEILIEHMKKKTADLVLSGLK 614
           +  EA+ ++++ I+    K +  D  L+  K
Sbjct: 256 I--EADVVIFNTIIDSLCKYRHVDDALNLFK 284



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           E M   G++ +  ++   +     KP+V  Y  MI  L ++R L     + ++MK+D   
Sbjct: 513 EGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL 572

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            +   Y TLI    + G      EL REM+    + D +  G L+  ++ +G++ K+
Sbjct: 573 PNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG-LVANMLHDGRLDKS 628


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 197/470 (41%), Gaps = 51/470 (10%)

Query: 163 SRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
           SR   F     +  L+DS G I   L +  +M    C P+   Y  ++  L  +      
Sbjct: 168 SRPTAFVYNTILKALVDS-GVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDA 226

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
           L++++EM    +  +V  Y  L+  LC  G++    +L   MK+ G L D   Y   + G
Sbjct: 227 LKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSG 286

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           L   G+V +A   L  L D G+   L  Y+ +I GL + ++FD+ +  ++  ++ +++PD
Sbjct: 287 LCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPD 346

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF--------------SVAADLEKFFEF-- 386
                 ++  CAE GR+++    L  M+K  F                  DLE+      
Sbjct: 347 VVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRS 406

Query: 387 --------LVGKEERIMM-----------ALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
                   L    + IM+           A+ +F+E+   G   +V  YN L+      G
Sbjct: 407 EMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREG 466

Query: 427 EVKKALYLFGKMR-------------GLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            +++A  LF KM              G N   +S S    +    +SG +L+A +    I
Sbjct: 467 RLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSI 526

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           I+   VP V  YN L  GLCK   +D A+ L ++ L      P E  Y   I  + R+  
Sbjct: 527 IDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKE-LQLKGISPDEITYGTLIDGLLRAHR 585

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
               + +   + Q G  P+  I ++++  +C+   L +A  ++ +   +K
Sbjct: 586 ENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKK 635



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 196/420 (46%), Gaps = 25/420 (5%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S GR A+ ++   +M     +P  F Y  +++ L     +   L ++  M       +  
Sbjct: 149 SAGRNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRA 208

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  L+ GLCK G      ++F EM + GI+ +  IY VL+  L   GK+ +A  LL  +
Sbjct: 209 TYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSM 268

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D G   D   YN+ + GLC+V + ++A++   +      A      + L+    +  R 
Sbjct: 269 KDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRF 328

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGYSSVP---I 414
           D  F     M  L+ +++ D+  +   + G  E  RI  AL   + +K KG+  VP    
Sbjct: 329 DEGFGYYKTM--LERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGF--VPDTFC 384

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YN ++  L + G++++A  L  +M   NL ++S + +I I    + G + EA +  +++ 
Sbjct: 385 YNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMG 444

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMML-------------VRDCLGNVASGPTEFKY 521
           E    P+V  YN L  G  + G ++ A ML             +R  LG  A+   + + 
Sbjct: 445 EHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLG--ANQVCDSES 502

Query: 522 ALTILH-VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
              ++H +C+SG+  K  ++L  +   G  P+ V  + +I+G+CK   L+ A ++F  L+
Sbjct: 503 LRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQ 562



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 164/391 (41%), Gaps = 28/391 (7%)

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           + RN+  PDV  YT MIR  A    ++  L   + MKK     D   Y T++  LC  G 
Sbjct: 339 LERNI-SPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGD 397

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           + R H L  EM +N +++D     ++I GL   G V +A  +  ++ + G    +  YN+
Sbjct: 398 LERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNA 457

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           +I G  R  + ++A  LF                       EMG   + F  L     L 
Sbjct: 458 LIDGFYREGRLEEARMLFHKM--------------------EMGNNPSLFLRLT----LG 493

Query: 374 FSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKK 430
            +   D E   + +  + +  +++ A  +   +   G    V  YN L+  L +   +  
Sbjct: 494 ANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDG 553

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A+ LF +++   +  + +++   I   + +    +A      I++    PS++ YN + +
Sbjct: 554 AVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMR 613

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
            LC++ ++  A+ L  D L    + P E +           G  +  +  L ++ QE   
Sbjct: 614 SLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQEYGY 673

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            +    +  + G+C+    ++A ++F  L+E
Sbjct: 674 ISSNPYTIWLIGLCQVRRTDDALRIFHTLQE 704



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 89/185 (48%), Gaps = 2/185 (1%)

Query: 398 LDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
            D   + +  G  +S   +  L+ A    G    A+  F +M        +  ++  ++ 
Sbjct: 122 FDALADARAAGLPASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILKA 181

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
            V+SG IL A   +N+++     P+ A YN L  GLCK G    A+ +  + L +    P
Sbjct: 182 LVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEML-DRGIMP 240

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
               Y + +  +C +G+ ++ +++L  M  +GC P+EV  +A +SG+CK G + EA +  
Sbjct: 241 NVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRL 300

Query: 577 TNLRE 581
             L++
Sbjct: 301 VMLQD 305



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 117/283 (41%), Gaps = 19/283 (6%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA---- 236
           +G + E ++I ++M  + C P V  Y A+I     E  L+    ++ +M+     +    
Sbjct: 430 RGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLR 489

Query: 237 ---------DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
                    D  +   L+  +C+ G+V++ ++L R + ++G++ D   Y  LI GL    
Sbjct: 490 LTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKAR 549

Query: 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
            +  A  L K+L   G   D   Y ++I GL R  + + A  LF+  +Q   +P  S  N
Sbjct: 550 NLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYN 609

Query: 348 PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL--- 404
            ++     M ++     L       K++   + E        KE       D   EL   
Sbjct: 610 SMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLAN--AHKEIEDGSLDDGVRELIKI 667

Query: 405 -KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
            +  GY S   Y I +  L ++     AL +F  ++   +++ 
Sbjct: 668 DQEYGYISSNPYTIWLIGLCQVRRTDDALRIFHTLQEFGIDIT 710



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 90/216 (41%), Gaps = 49/216 (22%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           M   G++ +  ++L  +  +   PDV  Y  +I  L   RNLD  +R+++E++   +  D
Sbjct: 510 MCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPD 569

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
            + Y TLI GL +  R      LF+ + ++G     +IY  ++  L    K+ +A +L  
Sbjct: 570 EITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWL 629

Query: 298 DL-------------------------VDSGYRADLGI-----------YNSIIGGLCRV 321
           D                          +D G R  + I           Y   + GLC+V
Sbjct: 630 DYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQEYGYISSNPYTIWLIGLCQV 689

Query: 322 KQFDKAYKLFEVTVQD---DLAPDFSTVNPLLVCCA 354
           ++ D A ++F  T+Q+   D+ P          CCA
Sbjct: 690 RRTDDALRIFH-TLQEFGIDITP---------ACCA 715


>gi|357484175|ref|XP_003612374.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513709|gb|AES95332.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 180/442 (40%), Gaps = 55/442 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K  G   N   YN L + L RN                G++     ++ +M      P+ 
Sbjct: 204 KNNGVTPNTVIYNTLLHALCRN----------------GKVGRARSLMNEM----VDPNE 243

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             +  +I     E NL   L + E+     +  DV+    ++  LC  GRV    E+   
Sbjct: 244 VTFNILISSYYKEENLVQALVLLEKCFALSLVPDVVTVTKVVEILCNAGRVTEAAEVLER 303

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           ++  G  +D   Y  LI+G  G GKV      LK + + GY  ++  YN +I G C  + 
Sbjct: 304 VESLGGSLDAVAYNTLIKGFCGVGKVKVGLHFLKQMENKGYLPNVDTYNILIYGFCESRM 363

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            D A  LF     D +  +F T + ++      GR+++ F +L  ME+ K          
Sbjct: 364 LDLALDLFNDMKTDGINRNFVTFDTMIRGLCSEGRIEDGFSILELMEETK---------- 413

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
                             E  KG     +  YN ++  L +     +A     KM  L  
Sbjct: 414 ------------------EGSKGH----ISPYNSIIYGLFKQNRFDEASEFLAKMGKLFP 451

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
                S +I  +C  + G I +A   ++K+I+   +PS+  YN L  G  + G I  A+ 
Sbjct: 452 RAVDRSMTIIQKC--KEGAIEDAKNIYDKMIDEGGIPSILVYNSLVHGFSQHGSIREAVE 509

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L+ + + N    P    +   I   C  G+ E  ++ + ++T  GC PN    S +I  +
Sbjct: 510 LINEMISN-NCFPIASTFNAIITEFCEQGKIESALKFMEDITARGCVPNTETYSPLIDVL 568

Query: 564 CKHGTLEEARKVFTNLRERKLL 585
           C+ G +++A +VF  + E+ +L
Sbjct: 569 CRKGDIQKALQVFLEMVEKGIL 590



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 128/542 (23%), Positives = 235/542 (43%), Gaps = 56/542 (10%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177
           T D + +++  +   + A + F WA     + H+ ++Y  L + L    +FR  D V +L
Sbjct: 37  TQDHLCQLILDQKTSSEALQTFRWASTFSKFTHSQSTYRTLIHKLC---IFRRFDTVKQL 93

Query: 178 MDSQ-----------------------GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
           +D                         G    ++ +L+   +    P +  + +++ VL 
Sbjct: 94  LDEMPTSIGANPGEDIFITIVRGLSRAGMTRRVITVLDLAYKFHGTPSLKIFNSILDVLV 153

Query: 215 AERNLDACLRVW-EEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
            E ++D     + + M +  V  D   +  L+ GLC   R+  G +L + +K NG+  + 
Sbjct: 154 KE-DIDMAREFYRKSMMESGVRGDDYTFGILMKGLCLTNRIGEGFKLLQLIKNNGVTPNT 212

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
            IY  L+  L   GKVG+A  L+ ++VD         +N +I    + +   +A  L E 
Sbjct: 213 VIYNTLLHALCRNGKVGRARSLMNEMVDPNEVT----FNILISSYYKEENLVQALVLLEK 268

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA----DLEKFFEFLVG 389
                L PD  TV  ++      GR+    ++L ++E L  S+ A     L K F   VG
Sbjct: 269 CFALSLVPDVVTVTKVVEILCNAGRVTEAAEVLERVESLGGSLDAVAYNTLIKGF-CGVG 327

Query: 390 KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           K   + + L   ++++ KGY  +V  YNIL+    E   +  AL LF  M+   +  N +
Sbjct: 328 K---VKVGLHFLKQMENKGYLPNVDTYNILIYGFCESRMLDLALDLFNDMKTDGINRNFV 384

Query: 449 SFSIAIQCHVESGDI---LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           +F   I+     G I       E   +  E S+   ++ YN +  GL K    D A   +
Sbjct: 385 TFDTMIRGLCSEGRIEDGFSILELMEETKEGSK-GHISPYNSIIYGLFKQNRFDEASEFL 443

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
              +G +   P     ++TI+  C+ G  E    + ++M  EG  P+ ++ ++++ G  +
Sbjct: 444 AK-MGKLF--PRAVDRSMTIIQKCKEGAIEDAKNIYDKMIDEGGIPSILVYNSLVHGFSQ 500

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAK 625
           HG++ EA ++   +        A+T  ++ I+ E  ++   +   S LKF      + A+
Sbjct: 501 HGSIREAVELINEMISNNCFPIAST--FNAIITEFCEQGKIE---SALKFM---EDITAR 552

Query: 626 GC 627
           GC
Sbjct: 553 GC 554



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 17/194 (8%)

Query: 84  HLSPIARFITDAFRKNQFQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWA 142
           H+SP    I   F++N+F    + + ++ KL  R     +  + K +      +K  +  
Sbjct: 419 HISPYNSIIYGLFKQNRFDEASEFLAKMGKLFPRAVDRSMTIIQKCKEGAIEDAKNIYDK 478

Query: 143 GKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
              +G   +   YN+L +  S+                 G I E +E++ +M  N C P 
Sbjct: 479 MIDEGGIPSILVYNSLVHGFSQ----------------HGSIREAVELINEMISNNCFPI 522

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
              + A+I     +  +++ L+  E++       +   Y  LI  LC+ G + +  ++F 
Sbjct: 523 ASTFNAIITEFCEQGKIESALKFMEDITARGCVPNTETYSPLIDVLCRKGDIQKALQVFL 582

Query: 263 EMKENGILIDRAIY 276
           EM E GIL D+ I+
Sbjct: 583 EMVEKGILPDQCIW 596


>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 134/581 (23%), Positives = 227/581 (39%), Gaps = 97/581 (16%)

Query: 103 WGPQVVTELSKL-RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           W P++  EL  L R + P  V  VL+++ +  +A +FF+WA +Q  Y+H+   Y A+   
Sbjct: 84  WNPKLEGELRHLLRSLKPRQVCAVLQLQTDERVALRFFYWADRQWRYRHDPIVYYAMLEI 143

Query: 162 LSRNNLFRAADQVPELMDSQ-------------------GRIAEMLEILEKMRRNLCKPD 202
           LS+  L + A +V  LM  +                   G++   + +L  M++   +PD
Sbjct: 144 LSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPD 203

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           +      I VL     LD  +R  E M+   +E +V+ Y  LI G C   R+    EL  
Sbjct: 204 LSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIA 263

Query: 263 EM------------------------------------KENGILIDRAIYGVLIEGLVGE 286
           EM                                    K++ +L D+  Y   +  L   
Sbjct: 264 EMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKH 323

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
           G   +A + L++  +  +R D   Y++I+   CR  + DKA ++          PD  T 
Sbjct: 324 GHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTY 383

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKL-----KFSVAADLEKFFEFLVGKEERIMM----- 396
             ++    +  ++D   K+L QM K        S  A L    +     E R MM     
Sbjct: 384 TSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEE 443

Query: 397 -------------------------ALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKK 430
                                    A D+  E+  KG+   P+  N+L+ +L +  +V +
Sbjct: 444 DWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDE 503

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A     +       VN ++F+  I    +  D+  A    + +   ++ P V  Y  +  
Sbjct: 504 AKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIID 563

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM-TQEGC 549
            L K G I+ A  L    L  V   PT   Y   I   CR G  E ++++L +M +++ C
Sbjct: 564 ALGKKGRIEEATKLAMKML-RVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQEC 622

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
                  + +I  +C  G LE+A K+   +       +ANT
Sbjct: 623 ---RTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANT 660



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 173/408 (42%), Gaps = 49/408 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ +  EI+ +M    C PDV  YT++I  L  ER +D   ++  +M K   + + ++
Sbjct: 358 EGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVS 417

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ GLCK G  +   E+    +E+  + +   Y VL+ G   EGK  +ACDL+++++
Sbjct: 418 YTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMI 477

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G+       N +I  LC+ ++ D+A +  E  + +  A     VN +           
Sbjct: 478 KKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCA-----VNVV----------- 521

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELK-GKGYSSVPIYNILM 419
           NF  ++       F    DLE               AL + +++     +  V  Y  ++
Sbjct: 522 NFTTVIH-----GFCQKDDLEA--------------ALSLLDDMYLSNKHPDVVTYTTII 562

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            AL + G +++A  L  KM  + L    +++   I  +   G + +  +   K+  +S+ 
Sbjct: 563 DALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKM--LSRQ 620

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
               AYN + + LC  G ++ A  L    LG V    T  K      H+       K I 
Sbjct: 621 ECRTAYNQVIEKLCSFGNLEQAYKL----LGKVLR--TASKIDANTCHMLIESYLSKGIP 674

Query: 540 VLN-----EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           +++      M      P+  +C  +   +   G  EEA K+     ER
Sbjct: 675 LMSYNVACRMFNRNLIPDLKLCEKVSKKLMLEGKSEEADKLILRFVER 722


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 118/490 (24%), Positives = 220/490 (44%), Gaps = 36/490 (7%)

Query: 134 LASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD-------------- 179
           +A KFFH   K +G K +  SY ++ + L +      A+++   M+              
Sbjct: 1   MAWKFFHEL-KAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTM 59

Query: 180 -----SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
                S GR  +  ++LE++R   C P V ++ +++  L  +R +D  L ++E MKKD  
Sbjct: 60  IMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKD-A 118

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           E +   Y  +I  LC GGRV   + +  EM+   +  +     ++++ L    K+ +A  
Sbjct: 119 EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYK 178

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           + +     G   D   Y S+I GL +  Q D+AY+LFE  +      +      L+    
Sbjct: 179 IFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFF 238

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGY-SS 411
             GR ++  K+  ++  ++     DL     ++  V K   +     +FE+++  G+   
Sbjct: 239 IHGRKEDGHKIFKEL--IRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPD 296

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           V  Y+IL+  L + G+ ++   +F  M+     +++ +++  +    +SG + +A E   
Sbjct: 297 VRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILE 356

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK---YALTILHV 528
           ++ E    P+VA Y  +  GL KI  +D A ML  +      S   E     Y+  I   
Sbjct: 357 EMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEE----AKSKGIELNVVLYSSLIDGF 412

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
            + G  ++   +L EM ++G  PN    ++++  + K   + EA   F +++E K     
Sbjct: 413 GKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMK--CPP 470

Query: 589 NTIVYDEILI 598
           NT  Y  ILI
Sbjct: 471 NTYTYS-ILI 479



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/477 (22%), Positives = 206/477 (43%), Gaps = 23/477 (4%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ------------------GRIA 185
           +++G   +  S+N++  CL +      A  + E+M                     GR+ 
Sbjct: 80  RERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVE 139

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E   IL++M      P++     M+  L   R L+   +++E   +     D + Y +LI
Sbjct: 140 EAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLI 199

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GL K G+V   + LF +M + G   +  +Y  LI      G+      + K+L+  G +
Sbjct: 200 DGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCK 259

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            DL + N+ +  + +  + +K   +FE        PD  + + L+    + G+      +
Sbjct: 260 PDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNI 319

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
              M++  F++ A           K  ++  A ++ EE+K K    +V  Y  ++  L +
Sbjct: 320 FHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAK 379

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
           I  + +A  LF + +   +E+N + +S  I    + G I EA     ++++    P+V  
Sbjct: 380 IDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYT 439

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           +N L   L K  EI+ A++  +  +  +   P  + Y++ I  +CR  +  K      +M
Sbjct: 440 WNSLLDALVKAEEINEALVCFQS-MKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDM 498

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
            ++G  PN V  + +ISG+ K G + +A  +F   +    + +A +      LIE M
Sbjct: 499 QKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASF---NALIEGM 552



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 144/338 (42%), Gaps = 47/338 (13%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + +   I E +R     PDV +Y+ +I  L           ++  MK+     D  AY
Sbjct: 276 GEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAY 335

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++ G CK G+V + +E+  EMKE  +    A YG +++GL    ++ +A  L ++   
Sbjct: 336 NAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKS 395

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++ +Y+S+I G  +V + D+AY + E  ++  L P+  T N LL           
Sbjct: 396 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLL----------- 444

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKG-KGYSSVPIYNILMG 420
                                  + LV K E I  AL  F+ +K  K   +   Y+IL+ 
Sbjct: 445 -----------------------DALV-KAEEINEALVCFQSMKEMKCPPNTYTYSILIN 480

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L  + +  KA   +  M+   L  N ++++  I    + G+I +A     +      +P
Sbjct: 481 GLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIP 540

Query: 481 SVAAYNCLTKGLC---------KIGEIDAAMMLVRDCL 509
             A++N L +G+          + G +D  M L  DCL
Sbjct: 541 DAASFNALIEGMSNANRAMEAYQAGWLDTTMRL--DCL 576



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 116/238 (48%), Gaps = 21/238 (8%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
            S  FH A KQ+G+  +  +YNA+   +C S                  G++ +  EILE
Sbjct: 316 TSNIFH-AMKQQGFALDARAYNAVVDGFCKS------------------GKVHKAYEILE 356

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
           +M+    +P V  Y A++  LA    LD    ++EE K   +E +V+ Y +LI G  K G
Sbjct: 357 EMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVG 416

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
           R+   + +  EM + G+  +   +  L++ LV   ++ +A    + + +     +   Y+
Sbjct: 417 RIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYS 476

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
            +I GLCRV++++KA+  ++   +  L P+  T   ++   A++G + + + L  + +
Sbjct: 477 ILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFK 534


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 190/405 (46%), Gaps = 15/405 (3%)

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
           ++R  LC      +  M+R L +       L +  +M +     + + Y T+I G C  G
Sbjct: 476 RLRLPLC---TTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRG 528

Query: 253 RVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG-YRADLGI 310
           RV    ++ REM+E  GI  ++  YG +I G    G+V +A  +  +++  G  + +  +
Sbjct: 529 RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM 588

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           YN++IGG C   + D A    +  V+  +A   +T N L+      GR    ++L+ +M 
Sbjct: 589 YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMG 648

Query: 371 KLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGE 427
                +A D+  +   + G  KE  +  AL++FE +  +G  ++V  Y  L+ AL + G+
Sbjct: 649 GK--GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQ 706

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           V++   LF +     +  + + ++  I  H  SG+I  A E   ++ +    P    YN 
Sbjct: 707 VQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNT 766

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L +GLC +G +D A  L+ D +      P    Y   I      G+ +  + + NEM  +
Sbjct: 767 LMRGLCLLGRVDEARKLI-DEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNK 825

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           G  P  +  +A+I G+CK+G  ++A  +   + E  +  + +T +
Sbjct: 826 GFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYI 870



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 150/331 (45%), Gaps = 35/331 (10%)

Query: 182 GRIAEMLEILEKM-RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           GR+ E +++ ++M  +   KP+   Y A+I     +  LD  L   + M +  V   V  
Sbjct: 564 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 623

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+  L   GR    +EL  EM   G+  D   Y +LI G   EG V KA ++ +++ 
Sbjct: 624 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 683

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G RA +  Y ++I  L +  Q  +  KLF+  V+  + PD    N L+   +  G +D
Sbjct: 684 RRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNID 743

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
             F+++ +MEK +  +A D                   DV              YN LM 
Sbjct: 744 RAFEIMGEMEKKR--IAPD-------------------DV-------------TYNTLMR 769

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L  +G V +A  L  +M    ++ + ++++  I  +   GD+ +A    N+++     P
Sbjct: 770 GLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 829

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
           ++  YN L +GLCK G+ D A  +V++ + N
Sbjct: 830 TLLTYNALIQGLCKNGQGDDAENMVKEMVEN 860



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 98/202 (48%), Gaps = 16/202 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
            ++G +    +Y AL Y LS+                +G++ E  ++ ++  R   +PD+
Sbjct: 683 SRRGVRATVVTYTALIYALSK----------------KGQVQETDKLFDEAVRRGIRPDL 726

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y A+I   +   N+D    +  EM+K  +  D + Y TL+ GLC  GRV    +L  E
Sbjct: 727 VLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDE 786

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M E GI  D   Y  LI G   +G V  A  +  ++++ G+   L  YN++I GLC+  Q
Sbjct: 787 MTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQ 846

Query: 324 FDKAYKLFEVTVQDDLAPDFST 345
            D A  + +  V++ + PD ST
Sbjct: 847 GDDAENMVKEMVENGITPDDST 868



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 16/231 (6%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G     A+YN L + L               MD  GR  E  E++E+M      PDVF
Sbjct: 614 ERGVAMTVATYNLLVHAL--------------FMD--GRGTEAYELVEEMGGKGLAPDVF 657

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  +I     E N+   L ++E M +  V A V+ Y  LI  L K G+V    +LF E 
Sbjct: 658 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEA 717

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              GI  D  +Y  LI      G + +A +++ ++       D   YN+++ GLC + + 
Sbjct: 718 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 777

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
           D+A KL +   +  + PD  T N L+   +  G + +  ++  +M    F+
Sbjct: 778 DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFN 828



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 5/261 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG++   L   ++M        V  Y  ++  L  +        + EEM    +  DV  
Sbjct: 599 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 658

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK G V +  E+F  M   G+      Y  LI  L  +G+V +   L  + V
Sbjct: 659 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAV 718

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G R DL +YN++I         D+A+++     +  +APD  T N L+     +GR+D
Sbjct: 719 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 778

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYS-SVPIYNI 417
              KL+ +M +    +  DL  +   + G   +  +  AL +  E+  KG++ ++  YN 
Sbjct: 779 EARKLIDEMTER--GIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNA 836

Query: 418 LMGALLEIGEVKKALYLFGKM 438
           L+  L + G+   A  +  +M
Sbjct: 837 LIQGLCKNGQGDDAENMVKEM 857



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 5/163 (3%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           S+PI    +  LL       A  LF  M  L L + + +F+I ++    +G    A E  
Sbjct: 447 SLPISTASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALE-- 504

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
             ++     P+   YN +  G C  G + AA+ ++R+        P ++ Y   I   C+
Sbjct: 505 --LLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCK 562

Query: 531 SGEAEKIIEVLNEMTQEG-CPPNEVICSAIISGMCKHGTLEEA 572
            G  ++ ++V +EM  +G   P  V+ +A+I G C  G L+ A
Sbjct: 563 VGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTA 605



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 54/105 (51%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E  +++++M     +PD+  Y  +I   + + ++   LR+  EM        ++ Y
Sbjct: 775 GRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTY 834

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
             LI GLCK G+      + +EM ENGI  D + Y  LIEGL  E
Sbjct: 835 NALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 879


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/472 (24%), Positives = 206/472 (43%), Gaps = 44/472 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G+ ++ L++ ++M      P+   Y  MI       +L+A  R+ ++M  D  + +V+ 
Sbjct: 207 SGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVT 266

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV--GE------------ 286
           Y  L+ GLC+ GR+     L  EM  + +L D   Y +L +GL   GE            
Sbjct: 267 YNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESL 326

Query: 287 ---------------------GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
                                GKV KA  + + LV +G      IYN++I G C+V+   
Sbjct: 327 KKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLR 386

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
            A+ +FE      + PD  T N L+    ++  +     L+ +ME  K  V   +E F  
Sbjct: 387 GAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME--KSGVDPSVETFNT 444

Query: 386 FL--VGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            +   G   ++     V  +++ KG  S V  +  ++ A  + G++ +A+ +   M   +
Sbjct: 445 LIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKD 504

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           +  N+  ++  I  ++ESGD  +A     K+       S+  YN L KGLC+  +ID A 
Sbjct: 505 VAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAE 564

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            L+   L N    P    Y   I   C  G+ +K +E+L EM + G  P    C  ++S 
Sbjct: 565 ELIY-TLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSA 623

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK 614
           +   G + +   ++  +  + +  E ++ +Y  I+++   +   D  ++ LK
Sbjct: 624 LASAGRVHDMECLYQQMLHKNV--EPSSSIYG-IMVDAYVRCENDSKVASLK 672



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 94/429 (21%), Positives = 176/429 (41%), Gaps = 44/429 (10%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD--LVEADVMAYVTLIMGLCKGGRVVRG 257
           +PD FA+  +++   A  +LD  L +   M +       D  +Y  +I GL + G+    
Sbjct: 154 RPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDA 213

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
            ++F EM + G+  +R  Y  +I+G V  G +     L   ++  G + ++  YN ++ G
Sbjct: 214 LKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSG 273

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
           LCR  + D+   L +      + PD  T + L       G       L A+  K    + 
Sbjct: 274 LCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLG 333

Query: 378 ADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFG 436
           A         + K+ ++  A  VFE L   G   +  IYN L+    ++ +++ A  +F 
Sbjct: 334 AYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFE 393

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M+  ++                                    P    YN L  GLCK+ 
Sbjct: 394 QMKSRHIR-----------------------------------PDHITYNALINGLCKLE 418

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            +  A  LV + +      P+   +   I     +G+ EK   VL++M Q+G   + +  
Sbjct: 419 MVTKAEDLVME-MEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISF 477

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL---IEHMKKKTADLVLSGL 613
            +++   CK+G + EA  +  ++  + +    N  VY+ I+   IE    + A L++  +
Sbjct: 478 GSVVKAFCKNGKIPEAVAILDDMIYKDV--APNAQVYNSIIDAYIESGDTEQALLLVEKM 535

Query: 614 KFFGLESKL 622
           K  G+ + +
Sbjct: 536 KNSGVSASI 544



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 85/183 (46%), Gaps = 5/183 (2%)

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI-- 473
           N+L+ +LL +G        FG +       ++ +++  +Q  V +GD+  A     ++  
Sbjct: 126 NLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAMLRRMGR 185

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            E +  P   +YN +  GL + G+   A+  V D + ++   P    Y   I    + G+
Sbjct: 186 SEGAPPPDAFSYNVVIAGLWRSGKGSDALK-VFDEMVDMGVAPNRITYNTMIDGHVKGGD 244

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT--I 591
            E    + ++M  +G  PN V  + ++SG+C+ G ++E R +   +    +L +  T  I
Sbjct: 245 LEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSI 304

Query: 592 VYD 594
           ++D
Sbjct: 305 LFD 307



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 16/164 (9%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K  G   +  +YN L   L R++                +I E  E++  +R    +PDV
Sbjct: 536 KNSGVSASIVTYNLLLKGLCRSS----------------QIDEAEELIYTLRNQGLRPDV 579

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            +Y  +I     + + D  L + +EM K  +   +    TL+  L   GRV     L+++
Sbjct: 580 VSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQ 639

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           M    +    +IYG++++  V      K   L K++ + G   D
Sbjct: 640 MLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 683



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 99/262 (37%), Gaps = 38/262 (14%)

Query: 107 VVTELSKLRRVTP--DLVAEVLKVENNPTLAS-----KFFHWAGK------------QKG 147
           ++  L KL  VT   DLV E+ K   +P++ +       +  AG+            QKG
Sbjct: 410 LINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKG 469

Query: 148 YKHNFASYNALAYCLSRNNLFRAA----------DQVP------ELMDS---QGRIAEML 188
            K +  S+ ++     +N     A          D  P       ++D+    G   + L
Sbjct: 470 IKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAL 529

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
            ++EKM+ +     +  Y  +++ L     +D    +   ++   +  DV++Y T+I   
Sbjct: 530 LLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISAC 589

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C  G   +  EL +EM + GI         L+  L   G+V     L + ++        
Sbjct: 590 CNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSS 649

Query: 309 GIYNSIIGGLCRVKQFDKAYKL 330
            IY  ++    R +   K   L
Sbjct: 650 SIYGIMVDAYVRCENDSKVASL 671


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/403 (25%), Positives = 180/403 (44%), Gaps = 8/403 (1%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           V + +  +G +AE   +  +M+   C PDV  + ++I        LD   ++ EEM++  
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG 253

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
            +ADV+ Y  LI   CK GR+   +  F  MK  G++ +   +   ++    EG V +A 
Sbjct: 254 CKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAM 313

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            L   +   G   +   Y  +I G C+  + D A  L +  V+  +  +  T   L+   
Sbjct: 314 KLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGL 373

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFF---EFLVGKEERIMMALDVFEELKGKGYS 410
            +  ++     +L  MEK        L        F+    E+   AL +  E+K KG  
Sbjct: 374 CKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEK---ALGLLSEMKNKGLE 430

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
             + +Y  L+  L  + ++ +A  L  KM    LE N + ++  +    +SG + EA   
Sbjct: 431 LDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAM 490

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
             KI++    P+V  Y  L  GLCK G ID A+      + ++   P    Y   +  +C
Sbjct: 491 LQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNK-MRDLGLDPNVQAYTALVDGLC 549

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           ++G   + +++ NEM  +G   ++V+ +A++ G  K G L +A
Sbjct: 550 KNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDA 592



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/448 (22%), Positives = 182/448 (40%), Gaps = 54/448 (12%)

Query: 144 KQKGYKHNFASYNALAYC----------------LSRNNLFRAADQVPELMDS---QGRI 184
           ++ G K +  +YNAL  C                + R  +          +D+   +G +
Sbjct: 250 RRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLV 309

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E +++  +MR      + F YT +I        LD  + + +EM +  V  +V+ Y  L
Sbjct: 310 REAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVL 369

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + GLCK  +V    ++ R M++ G+  +  +Y  LI G        KA  LL ++ + G 
Sbjct: 370 VDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGL 429

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+ +Y ++I GLC V + D+A  L     +  L P++     ++  C + G++     
Sbjct: 430 ELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIA 489

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE 424
           +L ++          L+  F+                         +V  Y  L+  L +
Sbjct: 490 MLQKI----------LDSGFQ------------------------PNVITYCALIDGLCK 515

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G + +A+  F KMR L L+ N  +++  +    ++G + EA +  N+++          
Sbjct: 516 AGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVV 575

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y  L  G  K G +  A  L +  + +       F Y   I   C      +  EV +EM
Sbjct: 576 YTALLDGYLKQGNLHDAFAL-KAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEM 634

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEA 572
              G  P+  + + +IS   K G LEEA
Sbjct: 635 IGHGIAPDRAVYNCLISKYQKLGNLEEA 662



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 201/437 (45%), Gaps = 22/437 (5%)

Query: 157 ALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE 216
           ALA    R+ L    D +  ++  +G + + +  + ++R     P+      ++  LA +
Sbjct: 111 ALALGPRRSALASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARD 170

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
           R+     R++E+    L   +V  +  +I  LCK G +     LF  MKE G L D   +
Sbjct: 171 RSGRLVRRLFEQ----LPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTF 226

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
             LI+G    G++ +   L++++  SG +AD+  YN++I   C+  + + AY  F    +
Sbjct: 227 NSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKR 286

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEER 393
           + +  +  T +  +    + G +    KL AQM     ++    E  +  L+    K  R
Sbjct: 287 EGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALN---EFTYTCLIDGTCKAGR 343

Query: 394 IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           +  A+ + +E+  +G   +V  Y +L+  L +  +V +A  +   M    +  N L ++ 
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 453 AIQCHVESGDILEA----CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
            I  H  + +  +A     E  NK +E+     ++ Y  L +GLC + ++D A  L+   
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLEL----DISLYGALIQGLCNVHKLDEAKSLLTK- 458

Query: 509 LGNVASGPTEFKYALTILHVC-RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
           +      P    Y  T++  C +SG+  + I +L ++   G  PN +   A+I G+CK G
Sbjct: 459 MDESGLEPNYIIYT-TMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAG 517

Query: 568 TLEEARKVFTNLRERKL 584
           +++EA   F  +R+  L
Sbjct: 518 SIDEAISHFNKMRDLGL 534



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 106/199 (53%), Gaps = 3/199 (1%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           +MD+    G++ E + +L+K+  +  +P+V  Y A+I  L    ++D  +  + +M+   
Sbjct: 474 MMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLG 533

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           ++ +V AY  L+ GLCK G +    +LF EM   G+ +D+ +Y  L++G + +G +  A 
Sbjct: 534 LDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAF 593

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            L   ++DSG + DL  Y   I G C +    +A ++F   +   +APD +  N L+   
Sbjct: 594 ALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKY 653

Query: 354 AEMGRMDNFFKLLAQMEKL 372
            ++G ++    L  +ME++
Sbjct: 654 QKLGNLEEAISLQDEMERV 672



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 170/391 (43%), Gaps = 45/391 (11%)

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMA--YVTLIMGLCKGGRVVRGHELFREMKE 266
           ++ VLA    LD  +R    +++  V  +     ++ L +   + GR+VR   LF ++  
Sbjct: 128 LLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVR--RLFEQLPA 185

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
             +      + ++I+ L  EG++ +A  L   + + G   D+  +NS+I G  +  + D+
Sbjct: 186 PNVFT----FNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDE 241

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
             +L E   +     D  T N L+ C  + GRM+  +   A M                 
Sbjct: 242 VEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAM----------------- 284

Query: 387 LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
              K E +M              ++V  ++  + A  + G V++A+ LF +MR   + +N
Sbjct: 285 ---KREGVM--------------ANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALN 327

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
             +++  I    ++G + +A    ++++      +V  Y  L  GLCK  ++  A  ++R
Sbjct: 328 EFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLR 387

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
             +        E  Y   I     +  +EK + +L+EM  +G   +  +  A+I G+C  
Sbjct: 388 -MMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNV 446

Query: 567 GTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             L+EA+ + T + E  L  E N I+Y  ++
Sbjct: 447 HKLDEAKSLLTKMDESGL--EPNYIIYTTMM 475



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 77/184 (41%), Gaps = 44/184 (23%)

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N  +F+I I    + G++ EA    +++ EM  +P V  +N L  G  K GE+D      
Sbjct: 187 NVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELD------ 240

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
                                      E E+++E   EM + GC  + V  +A+I+  CK
Sbjct: 241 ---------------------------EVEQLVE---EMRRSGCKADVVTYNALINCFCK 270

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAK 625
            G +E A   F  ++   ++  AN + +   +    K+    LV   +K F   ++++ +
Sbjct: 271 FGRMETAYGYFAAMKREGVM--ANVVTFSTFVDAFCKEG---LVREAMKLF---AQMRVR 322

Query: 626 GCKL 629
           G  L
Sbjct: 323 GMAL 326


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/439 (22%), Positives = 203/439 (46%), Gaps = 38/439 (8%)

Query: 179 DSQGRIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           D  G + E L +L  +  +  C PDV +Y A+++ L   +       + EEM +     +
Sbjct: 200 DQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPN 259

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ + TLI  LC+ G   R H++  +M ++G   D  +Y  +++G+  EG +  A ++L 
Sbjct: 260 VVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILD 319

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            +   G + ++  YN+++ GLC  +++++A +L      +D   D  T N L+    + G
Sbjct: 320 RMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNG 379

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNI 417
            +    +LL QM                                  L+      V  Y  
Sbjct: 380 LVYRVIELLEQM----------------------------------LEHGCVPDVITYTT 405

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++    + G + +A+ L   M       N++S++I ++    +   ++A +  +++IE  
Sbjct: 406 VINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQG 465

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P+   +N +   LCK G ++ A+ L++  L N  S P    Y+  I  + ++G+ ++ 
Sbjct: 466 CSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCS-PDLISYSTVIDGLGKAGKTDEA 524

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +E+LN M  +G  PN +I S+I S + K G +    ++F N+++  + ++A  ++Y+ ++
Sbjct: 525 LELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDA--VLYNAVI 582

Query: 598 IEHMKKKTADLVLSGLKFF 616
               K+   D  +  L + 
Sbjct: 583 SSLCKRGGTDRAIEFLAYM 601



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 164/389 (42%), Gaps = 46/389 (11%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE------- 286
           V  +   Y  ++  LC  GR+     +  EM+  G      +Y V++E            
Sbjct: 111 VPPNAYTYFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFR 170

Query: 287 --------------------------------GKVGKACDLLKDLVDS-GYRADLGIYNS 313
                                           G V +A  LL+DL  S G   D+  YN+
Sbjct: 171 SAVRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNA 230

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           ++ GLC  K++ +   L E  V+    P+  T N L+      G  +   ++LAQM  + 
Sbjct: 231 VLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQM--VD 288

Query: 374 FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKK 430
                D+  +   L G  KE  + +A ++ + +   G   +V  YN ++  L      ++
Sbjct: 289 HGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQ 348

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A  L  +M   +  ++ ++F+I +    ++G +    E   +++E   VP V  Y  +  
Sbjct: 349 AEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVIN 408

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           G CK G ID A+ML++  +      P    Y + +  +C +       +++++M ++GC 
Sbjct: 409 GFCKEGLIDEAVMLLKS-MAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCS 467

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNL 579
           PN V  + +I+ +CK G +E+A ++   +
Sbjct: 468 PNPVTFNTVINFLCKKGLVEQAIELLKQM 496



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 116/252 (46%), Gaps = 1/252 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G +  ++E+LE+M  + C PDV  YT +I     E  +D  + + + M       + ++
Sbjct: 378 NGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTIS 437

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  ++ GLC   R V   +L  +M E G   +   +  +I  L  +G V +A +LLK ++
Sbjct: 438 YTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQML 497

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +G   DL  Y+++I GL +  + D+A +L  V V   ++P+    + +    ++ GR++
Sbjct: 498 LNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRIN 557

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILM 419
              ++   ++ +     A L       + K      A++    +   G   +   Y IL+
Sbjct: 558 RVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILI 617

Query: 420 GALLEIGEVKKA 431
             L   G VK+A
Sbjct: 618 RGLASEGFVKEA 629



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 88/194 (45%), Gaps = 1/194 (0%)

Query: 157 ALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE 216
           ++A C  R N       +  L  ++ R  +  +++ +M    C P+   +  +I  L  +
Sbjct: 425 SMAACGCRPNTISYTIVLKGLCSAE-RWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKK 483

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
             ++  + + ++M  +    D+++Y T+I GL K G+     EL   M   G+  +  IY
Sbjct: 484 GLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIY 543

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
             +   L  EG++ +   +  ++ D   R+D  +YN++I  LC+    D+A +     V 
Sbjct: 544 SSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVS 603

Query: 337 DDLAPDFSTVNPLL 350
               P+ ST   L+
Sbjct: 604 SGCMPNESTYTILI 617



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 114/247 (46%), Gaps = 23/247 (9%)

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGK----EERIMMALDVFEELKGKGYSSVP-IYNILMG 420
           LA   +L  SV      +  F V +      RI  AL V +E++ +G + +P +Y++++ 
Sbjct: 99  LASARRLAASVPVPPNAYTYFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILE 158

Query: 421 ALLE---IGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI-I 474
           A       G  + A+ +   +  RG  L+V + +  +   C  + G + EA      +  
Sbjct: 159 AACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCD-QGGSVDEALRLLRDLPT 217

Query: 475 EMSQVPSVAAYNCLTKGLC---KIGEIDAAMM-LVRDCLGNVASGPTEFKYALTILHVCR 530
                P V +YN + KGLC   + G +   M  +VR     V   P    +   I ++CR
Sbjct: 218 SFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVR-----VGCPPNVVTFNTLIGYLCR 272

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +G  E++ +VL +M   GC P+  + + ++ G+CK G LE A ++   +    L  + N 
Sbjct: 273 NGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGL--KPNV 330

Query: 591 IVYDEIL 597
           + Y+ +L
Sbjct: 331 VCYNTVL 337



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  E LE+L  M      P+   Y+++   L+ E  ++  +++++ ++   + +D + Y
Sbjct: 519 GKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLY 578

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I  LCK G   R  E    M  +G + + + Y +LI GL  EG V +A ++L +L  
Sbjct: 579 NAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTELCS 638

Query: 302 SG 303
            G
Sbjct: 639 KG 640



 Score = 39.7 bits (91), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 7/101 (6%)

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN +  G C+ G++ +A  L      +V   P  + Y   +  +C  G     + VL+EM
Sbjct: 86  YNAMVSGYCRAGQLASARRLA----ASVPVPPNAYTYFPVVRALCARGRIADALSVLDEM 141

Query: 545 TQEGCPPNEVICSAIISGMCKH---GTLEEARKVFTNLRER 582
            + GC P   +   I+   C     G    A +V  +L  R
Sbjct: 142 RRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGR 182


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 187/412 (45%), Gaps = 46/412 (11%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+G  A+M+ +   M+ N    D   +  +I   A    +D  + ++ EM++  V  DV+
Sbjct: 417 SEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVV 476

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I    + GR+    E F +M   GI  + A+Y  +I+G    G + KA +L+ ++
Sbjct: 477 TYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEM 536

Query: 300 VDSGY-RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           ++ G  R D+  +NS+I  LC+  +   A+ +F++       PD  T   L+     +G+
Sbjct: 537 INKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGK 596

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL 418
           MD  FK+L  ME                +VG E  I+                   Y+ L
Sbjct: 597 MDKAFKILDAME----------------VVGVETDIV------------------TYSTL 622

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G +   L LF +M+   ++ N++++ I +     +G  + A +  +++IE   
Sbjct: 623 LDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGT 682

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC-----RSGE 533
             +V+ Y  +  GLC+    D A++L +        G    K+++TIL+       +   
Sbjct: 683 TVTVSIYGIILGGLCRNNCADEAIILFQKL------GTMNVKFSITILNTMINAMYKVQR 736

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
            E+  E+   ++  G  PNE     +I  + K G +E+A  +F+++ +  ++
Sbjct: 737 KEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIV 788



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/489 (22%), Positives = 208/489 (42%), Gaps = 23/489 (4%)

Query: 113 KLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAAD 172
           K+ ++T   + + L   N    A         + G   N  SY+ +   L  N++ + A 
Sbjct: 189 KIHQITASTLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRAL 248

Query: 173 QVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
            + ++M  +G                C P+V AY  +I     E        ++ EM + 
Sbjct: 249 DLFQMMAKEG--------------GACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQ 294

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            V+ DV+ Y  +I  LCK   + +   + R+M  NG   D   Y  +I G    G++ +A
Sbjct: 295 GVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEA 354

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
             + + +   G   ++ I NS +  LC+  +  +A ++F+        PD  +   LL  
Sbjct: 355 AKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHG 414

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS 410
            A  G   +   L   M+     +AAD   F   +    +R M+  A+ +F E++ +G S
Sbjct: 415 YASEGWFADMIGLFNSMK--SNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVS 472

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
             V  Y+ ++ A   +G +  A+  F +M    ++ N+  +   IQ     G +++A E 
Sbjct: 473 PDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKEL 532

Query: 470 HNKIIEMS-QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
            +++I      P +  +N +   LCK G +  A  +  D + ++   P    +   I   
Sbjct: 533 VSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIF-DLVTDIGERPDVITFTSLIDGY 591

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C  G+ +K  ++L+ M   G   + V  S ++ G  K+G + +   +F  ++ + +  + 
Sbjct: 592 CLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGV--KP 649

Query: 589 NTIVYDEIL 597
           NT+ Y  +L
Sbjct: 650 NTVTYGIML 658



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 189/438 (43%), Gaps = 14/438 (3%)

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           +R  L    + A T +  +  A R  +A   +   M +     +V +Y  ++ GLC    
Sbjct: 184 LRTGLKIHQITASTLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSM 243

Query: 254 VVRGHELFREM-KENGILIDRAI-YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
             R  +LF+ M KE G      + Y  +I G   EG+ GKAC L  ++   G + D+  Y
Sbjct: 244 SQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTY 303

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N II  LC+ +  DKA  +      +   PD  T N ++   A +GR+    K+  +M+ 
Sbjct: 304 NLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKS 363

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKK 430
                   +   F   + K  R   A ++F+ +  KG+   +  Y  L+      G    
Sbjct: 364 RGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFAD 423

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
            + LF  M+   +  +   F+I I  + + G + +A     ++ +    P V  Y+ +  
Sbjct: 424 MIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVIS 483

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
              ++G +  AM         VA G  P    Y   I   C  G   K  E+++EM  +G
Sbjct: 484 AFSRMGRLTDAMEKFNQM---VARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKG 540

Query: 549 CP-PNEVICSAIISGMCKHGTLEEARKVF---TNLRERKLLTEANTIVYDEILIEHMKKK 604
            P P+ V  +++I+ +CK G + +A  +F   T++ ER  +    +++    L+  M K 
Sbjct: 541 IPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDK- 599

Query: 605 TADLVLSGLKFFGLESKL 622
            A  +L  ++  G+E+ +
Sbjct: 600 -AFKILDAMEVVGVETDI 616



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/431 (21%), Positives = 186/431 (43%), Gaps = 9/431 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G   +   +  +M R   KPDV  Y  +I  L   R +D    V  +M  +  + D + 
Sbjct: 278 EGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVT 337

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G    GR+    ++FR+MK  G++ +  I    +  L   G+  +A ++   + 
Sbjct: 338 YNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMT 397

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G++ D+  Y +++ G      F     LF     + +A D    N L+   A+ G +D
Sbjct: 398 AKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVD 457

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNI 417
           +   +  +M++    V+ D+  +   +    +  R+  A++ F ++  +G   +  +Y+ 
Sbjct: 458 DAMLIFTEMQQQ--GVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHS 515

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNL-EVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           ++      G + KA  L  +M    +   + + F+  I    + G +++A +  + + ++
Sbjct: 516 IIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDI 575

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
            + P V  +  L  G C +G++D A  ++ D +  V        Y+  +    ++G    
Sbjct: 576 GERPDVITFTSLIDGYCLVGKMDKAFKIL-DAMEVVGVETDIVTYSTLLDGYFKNGRIND 634

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
            + +  EM ++G  PN V    +++G+ + G    ARK F  + E    T     +Y  I
Sbjct: 635 GLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESG--TTVTVSIYGII 692

Query: 597 LIEHMKKKTAD 607
           L    +   AD
Sbjct: 693 LGGLCRNNCAD 703



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 153/335 (45%), Gaps = 29/335 (8%)

Query: 146 KGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDS-------------------QGRI 184
           +G + N A Y+++   +C+    L +A + V E+++                     GR+
Sbjct: 504 RGIQPNTAVYHSIIQGFCM-HGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRV 562

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            +  +I + +     +PDV  +T++I        +D   ++ + M+   VE D++ Y TL
Sbjct: 563 MDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTL 622

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + G  K GR+  G  LFREM+  G+  +   YG+++ GL   G+   A     ++++SG 
Sbjct: 623 LDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGT 682

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
              + IY  I+GGLCR    D+A  LF+     ++    + +N ++    ++ R +   +
Sbjct: 683 TVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKE 742

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYNILMGA 421
           L A +                  + K+  +  A ++F  ++  G   VP   + N ++  
Sbjct: 743 LFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGI--VPGSRLLNRIIRM 800

Query: 422 LLEIGEVKKALYLFGKMRG--LNLEVNSLSFSIAI 454
           LLE GE+ KA     K+ G  + LE ++ S  +++
Sbjct: 801 LLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSL 835



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 159/400 (39%), Gaps = 48/400 (12%)

Query: 141 WAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCK 200
           W     G  ++  S    A C   N L  A  +       +G + + + I  +M++    
Sbjct: 420 WFADMIGLFNSMKSNGIAADCRVFNILIHAYAK-------RGMVDDAMLIFTEMQQQGVS 472

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PDV  Y+ +I   +    L   +  + +M    ++ +   Y ++I G C  G +V+  EL
Sbjct: 473 PDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKEL 532

Query: 261 FREMKENGI-LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
             EM   GI   D   +  +I  L  +G+V  A D+   + D G R D+  + S+I G C
Sbjct: 533 VSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYC 592

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
            V + DKA+K+ +      +  D  T + LL    + GR+++   L  +M++    V  +
Sbjct: 593 LVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRK--GVKPN 650

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYS--------------------------- 410
              +   L G  +  R + A   F E+   G +                           
Sbjct: 651 TVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQ 710

Query: 411 ---------SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
                    S+ I N ++ A+ ++   ++A  LF  +    L  N  ++ + I   ++ G
Sbjct: 711 KLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDG 770

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            + +A    + + +   VP     N + + L + GEI  A
Sbjct: 771 AVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKA 810



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 110/274 (40%), Gaps = 36/274 (13%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           Y+ ++   CR ++ D    LF   ++  L     T + LL C     R            
Sbjct: 160 YSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANR------------ 207

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKK 430
                               EE + + L    EL      +V  Y+I++  L +    ++
Sbjct: 208 -------------------TEEAVNVLLHRMSEL--GCVPNVFSYSIILKGLCDNSMSQR 246

Query: 431 ALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
           AL LF  M   G     N ++++  I    + G+  +AC   +++      P V  YN +
Sbjct: 247 ALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLI 306

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
              LCK   +D A +++R    N A  P    Y   I      G  ++  ++  +M   G
Sbjct: 307 IDALCKARAMDKAELVLRQMTTNGAQ-PDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRG 365

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             PN VIC++ ++ +CKHG  +EA ++F ++  +
Sbjct: 366 LIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAK 399



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 10/189 (5%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC- 469
           +V  Y+ILM            L LFG +    L+++ ++ S  ++C   +    EA    
Sbjct: 156 TVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVL 215

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIG----EIDAAMMLVRDCLGNVASGPTEFKYALTI 525
            +++ E+  VP+V +Y+ + KGLC        +D   M+ ++     A  P    Y   I
Sbjct: 216 LHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKE---GGACSPNVVAYNTVI 272

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
               + GE  K   + +EMT++G  P+ V  + II  +CK   +++A  V   +      
Sbjct: 273 HGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNG-- 330

Query: 586 TEANTIVYD 594
            + +T+ Y+
Sbjct: 331 AQPDTVTYN 339


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 204/459 (44%), Gaps = 52/459 (11%)

Query: 183 RIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAE---RNLDACLRVWEEMKKDLVEADV 238
           R  E L+IL      L C PDVF+Y  +++ L  +      D  LR+  E    +   DV
Sbjct: 163 RTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAE-GGTVCSPDV 221

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           +AY T+I G  K G V +  +LF+EM + GI  D   Y  ++  L     + KA   L+ 
Sbjct: 222 VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQ 281

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +V+ G   D   YN++I G     Q+ +A ++F+   +  + PD   +N L+    + G+
Sbjct: 282 MVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGK 341

Query: 359 MD---NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYSSVP 413
           +    + F  +A   +       D+  +   L G   +  ++   D+F+ + G G + V 
Sbjct: 342 IKEARDVFDTMAMKGQ-----NPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVI 396

Query: 414 -IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             +N+L+ A    G + KA+ +F +MR   ++ + +++   I      G + +A E  N+
Sbjct: 397 CTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQ 456

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG---------------------- 510
           +I+   VP   AY+CL +G C  G +  A  L+ + +                       
Sbjct: 457 MIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGR 516

Query: 511 ------------NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
                       NV   P    Y + +   C  G+ EK + V + M   G  PN V    
Sbjct: 517 VMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGT 576

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +++G CK G ++E   +F  + ++ +  + +TI+Y+ I+
Sbjct: 577 LVNGYCKIGRIDEGLSLFREMLQKGI--KPSTILYNIII 613



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 198/414 (47%), Gaps = 12/414 (2%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + +M ++ + M  +   P +  +  +I+  A    LD  + ++ EM+   V+  V+
Sbjct: 373 TKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVV 432

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y+T+I  LC+ G++    E F +M + G++ D+  Y  LI+G    G + KA +L+ ++
Sbjct: 433 TYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEI 492

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +++G R D+  + SII  LC++ +   A  +F++TV   L PD    N L+     +G+M
Sbjct: 493 MNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKM 552

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           +   ++   M  +   +  ++  +   + G  K  RI   L +F E+  KG   S  +YN
Sbjct: 553 EKALRVFDAM--VSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYN 610

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           I++  L E G    A   F +M    + +N  ++SI ++   ++    EA     ++  M
Sbjct: 611 IIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAM 670

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA-SG--PTEFKYALTILHVCRSGE 533
           +    +   N +  G+ +   ++ A    +D   +++ SG  P    Y++ I ++ + G 
Sbjct: 671 NVKIDIITLNTMIAGMFQTRRVEEA----KDLFASISRSGLVPCAVTYSIMITNLIKEGL 726

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
            E+  ++ + M   GC P+  + + ++  + K   +  A    + + ER    E
Sbjct: 727 VEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLE 780



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 177/387 (45%), Gaps = 13/387 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE- 259
           P  + Y  ++         +  L  + ++ +  +  D +    L+ G C+  R     + 
Sbjct: 111 PTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDI 170

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY--RADLGIYNSIIGG 317
           L     E G + D   Y +L++ L  +GK G+A DLL+ + + G     D+  YN++I G
Sbjct: 171 LLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDG 230

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
             +    +KA  LF+  VQ  + PD  T + ++    +   MD     L QM  +   V 
Sbjct: 231 FFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQM--VNKGVL 288

Query: 378 ADLEKFFEFLVGKEE--RIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYL 434
            D   +   + G     +   A+ VF+E++ +     V   N LMG+L + G++K+A  +
Sbjct: 289 PDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDV 348

Query: 435 FGK--MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
           F    M+G N +V   S++I +  +   G +++  +  + ++     P +  +N L K  
Sbjct: 349 FDTMAMKGQNPDV--FSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAY 406

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
              G +D AM++  + + +    P    Y   I  +CR G+ +  +E  N+M  +G  P+
Sbjct: 407 ANCGMLDKAMIIFNE-MRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPD 465

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNL 579
           +     +I G C HG+L +A+++ + +
Sbjct: 466 KYAYHCLIQGFCTHGSLLKAKELISEI 492



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 183/443 (41%), Gaps = 47/443 (10%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G+  E + + ++MRR    PDV A   ++  L     +     V++ M       DV 
Sbjct: 303 STGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 362

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y  ++ G    G +V   +LF  M  +GI      + VLI+     G + KA  +  ++
Sbjct: 363 SYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEM 422

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D G +  +  Y ++I  LCR+ + D A + F   +   + PD    + L+      G +
Sbjct: 423 RDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSL 482

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKG-YSSVPIYN 416
               +L++++  +   +  D+  F   +  + K  R+M A ++F+     G +    +YN
Sbjct: 483 LKAKELISEI--MNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYN 540

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           +LM     +G+++KAL +F  M    +E                                
Sbjct: 541 MLMDGYCLVGKMEKALRVFDAMVSAGIE-------------------------------- 568

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P+V  Y  L  G CKIG ID  + L R+ L      P+   Y + I  +  +G    
Sbjct: 569 ---PNVVGYGTLVNGYCKIGRIDEGLSLFREMLQK-GIKPSTILYNIIIDGLFEAGRTVP 624

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIV- 592
                +EMT+ G   N+   S ++ G+ K+   +EA  +F  LR   +   +   NT++ 
Sbjct: 625 AKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIA 684

Query: 593 --YDEILIEHMKKKTADLVLSGL 613
             +    +E  K   A +  SGL
Sbjct: 685 GMFQTRRVEEAKDLFASISRSGL 707


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 186/416 (44%), Gaps = 12/416 (2%)

Query: 165 NNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLC---KPDVFAYTAMIRVLAAERNLDA 221
           N L  A  + P     +   A  +E+ ++M R  C    P ++ Y  +I      R  D 
Sbjct: 148 NELLSALARAPPSAACRDVPALAVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDL 207

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
            L V+  + +  +  DV +Y  LI G  K G V + H+LF +M+E GI+ +   Y  LI 
Sbjct: 208 GLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLIN 267

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
           GL    ++ KA  +L+ +V +G R +   YN +I G      + ++ ++F+      L P
Sbjct: 268 GLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVP 327

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA--LD 399
           D    N  +    + GR+     +   M  LK     D+  +   L G      +A   +
Sbjct: 328 DVGNCNSFMTALCKHGRIKEARDIFDSM-VLK-GPKPDVISYGALLHGYATAGCIAGMDN 385

Query: 400 VFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
           +F  +  +G   VP   ++N L+ A   +G + K+L +F  M    +  + ++FS  I  
Sbjct: 386 LFNVMVCEGV--VPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISA 443

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
               G + +A E  N +I+    P  A Y+CL +G C   ++  A  L+ D L      P
Sbjct: 444 FCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPP 503

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
               +   I ++C+ G   +  +V++ +   G  PN +  ++++ G C  G ++EA
Sbjct: 504 CIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEA 559



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 188/419 (44%), Gaps = 19/419 (4%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L +  ++ R    PDVF+Y A+I   + E  +D    ++ +M++  +  +V+ Y +LI G
Sbjct: 209 LPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLING 268

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK   + +   + R+M   G+  +   Y  LI G    G   ++  + K++  S    D
Sbjct: 269 LCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPD 328

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG---RMDNFFK 364
           +G  NS +  LC+  +  +A  +F+  V     PD  +   LL   A  G    MDN F 
Sbjct: 329 VGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFN 388

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMM---ALDVFEELKGKGYS-SVPIYNILMG 420
           ++         V  D    F  L+    R+ M   +L +FE++  +G +  +  ++ ++ 
Sbjct: 389 VMVCE-----GVVPD-RHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVIS 442

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS-QV 479
           A   +G +  A+  F  M    +  ++  +S  IQ      D+++A E  + ++      
Sbjct: 443 AFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPP 502

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P +  +  +   LCK G +     +V D + +    P    +   +   C  G  ++ + 
Sbjct: 503 PCIKFFTSIINNLCKEGRVAEGKDVV-DLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVG 561

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN-LRERKLLTEANTIVYDEIL 597
           +L+ M   G  P+    + ++ G CKHG +++A  +F + L +R  LT   ++ Y+ IL
Sbjct: 562 LLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLT---SVSYNIIL 617



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/468 (22%), Positives = 184/468 (39%), Gaps = 54/468 (11%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           KG K +  SY AL +  +        D +  +M  +G +                PD   
Sbjct: 358 KGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVV----------------PDRHV 401

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           +  +I   A    +D  L ++E+M K  V  D++ + T+I   C+ GR+    E F  M 
Sbjct: 402 FNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMI 461

Query: 266 ENGILIDRAIYGVLIEG------------------------------------LVGEGKV 289
           + G+  D A+Y  LI+G                                    L  EG+V
Sbjct: 462 DTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRV 521

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            +  D++  ++ +G R +L  +NS++ G C V    +A  L +      + PD  T N L
Sbjct: 522 AEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTL 581

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY 409
           +    + GR+D+   L   M   + ++ +         + +  R ++A ++F E+   G 
Sbjct: 582 VDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGM 641

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           + S+  Y  ++G L       +A  L  K+  +N++ + L+F+I I+   + G   EA E
Sbjct: 642 AVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKE 701

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
               I     VP++  Y  +   L K    + A  L    +   +  P        I  +
Sbjct: 702 LFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSS-MEKSSCTPDSRILNEIIRML 760

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
              GE  K    L+++ ++G  P     S +I     +G   E  K+ 
Sbjct: 761 LNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKYREYIKLL 808



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/440 (20%), Positives = 182/440 (41%), Gaps = 23/440 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           +++G   N  +Y++L   L +      A++V   M   G                 +P+ 
Sbjct: 251 EEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG----------------VRPNN 294

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  +I   +        +RV++EM   L+  DV    + +  LCK GR+    ++F  
Sbjct: 295 MTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDS 354

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M   G   D   YG L+ G    G +    +L   +V  G   D  ++N++I    R+  
Sbjct: 355 MVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGM 414

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            DK+  +FE   +  + PD  T + ++     +GR+D+  +    M  +   V  D   +
Sbjct: 415 MDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHM--IDTGVPPDTAVY 472

Query: 384 FEFLVGKEER--IMMALDVFEELKGKGYSS--VPIYNILMGALLEIGEVKKALYLFGKMR 439
              + G+  R  ++ A ++  ++  KG     +  +  ++  L + G V +   +   + 
Sbjct: 473 SCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLII 532

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
                 N ++F+  +  +   G++ EA    + +  +   P +  YN L  G CK G ID
Sbjct: 533 HTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRID 592

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A+ L RD L    +  T   Y + +  + ++       E+ +EM + G   +    + +
Sbjct: 593 DALTLFRDMLHKRVT-LTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATV 651

Query: 560 ISGMCKHGTLEEARKVFTNL 579
           + G+C++   +EA  +   L
Sbjct: 652 LGGLCRNNCTDEANMLLEKL 671



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 1/169 (0%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           ++  YNIL+            L +FG++    L  +  S++  I    + G++ +A +  
Sbjct: 188 TIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLF 247

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
            K+ E   +P+V  Y+ L  GLCK  E+D A  ++R  +G     P    Y   I     
Sbjct: 248 YKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVG-AGVRPNNMTYNCLIHGYST 306

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           SG  ++ + V  EM+     P+   C++ ++ +CKHG ++EAR +F ++
Sbjct: 307 SGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSM 355



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/307 (19%), Positives = 122/307 (39%), Gaps = 41/307 (13%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           YN +I    R ++ D    +F   ++  L PD  + N L+   ++ G +D    L  +ME
Sbjct: 192 YNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKME 251

Query: 371 KLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKG--------------KGYSSVPI 414
           +    +  ++  +   + G  K + +  A  V  ++ G               GYS+  +
Sbjct: 252 EQ--GIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGM 309

Query: 415 Y----------------------NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           +                      N  M AL + G +K+A  +F  M     + + +S+  
Sbjct: 310 WKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGA 369

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
            +  +  +G I       N ++    VP    +N L     ++G +D ++++  D +   
Sbjct: 370 LLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFED-MTKQ 428

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              P    ++  I   CR G  +  +E  N M   G PP+  + S +I G C    L +A
Sbjct: 429 GVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKA 488

Query: 573 RKVFTNL 579
           +++ +++
Sbjct: 489 KELISDM 495



 Score = 42.4 bits (98), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 13/225 (5%)

Query: 150 HNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAM 209
           H   +  +++Y +  + LF+A   +         +A+  E+  +M  +     +  Y  +
Sbjct: 603 HKRVTLTSVSYNIILHGLFQARRTI---------VAK--EMFHEMIESGMAVSIHTYATV 651

Query: 210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
           +  L      D    + E++    V+ D++ +  +I  + K GR     ELF  +   G+
Sbjct: 652 LGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGL 711

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
           +     Y V+I  L+ E     A +L   +  S    D  I N II  L    +  KA  
Sbjct: 712 VPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGN 771

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
                 +  + P+ +T + L+   +  G+   + KLL   EK +F
Sbjct: 772 YLSKIDKKGILPEATTTSLLIYLFSVNGKYREYIKLLP--EKYRF 814


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 194/422 (45%), Gaps = 37/422 (8%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
             + +E + ++++M +  C+P++  Y  ++  L    + D  L +  +M+   +EADV+ 
Sbjct: 165 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 224

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + T+I  LCK   V     LF+EM+  GI  +   Y  LI  L   G+   A  LL D++
Sbjct: 225 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 284

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +     +L  +N++I    +  +F +A KL++  ++  + PD  T N L+          
Sbjct: 285 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLV---------- 334

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
           N F +  +++K K        + FEF+V K        D F +        V  YN L+ 
Sbjct: 335 NGFCMHDRLDKAK--------QMFEFMVSK--------DCFPD--------VVTYNTLIK 370

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              +   V+    LF +M    L  ++++++  IQ     GD   A +   +++     P
Sbjct: 371 GFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPP 430

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            +  Y+ L  GLC  G+++ A+  V D +         + Y   I  +C++G+ +   ++
Sbjct: 431 DIMTYSILLDGLCNNGKLEKALE-VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 489

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
              ++ +G  PN V  + +ISG+C    L+EA  +   ++E   L  + T  Y+ ++  H
Sbjct: 490 FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGT--YNTLIRAH 547

Query: 601 MK 602
           ++
Sbjct: 548 LR 549



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 162/360 (45%), Gaps = 6/360 (1%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L +L KM     + DV  +  +I  L   R++D  L +++EM+   +  +V+ Y +LI  
Sbjct: 207 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 266

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC  GR     +L  +M E  I  +   +  LI+  V EGK  +A  L  D++      D
Sbjct: 267 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPD 326

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  YNS++ G C   + DKA ++FE  V  D  PD  T N L+    +  R+++  +L  
Sbjct: 327 IFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFR 386

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLE 424
           +M      +  D   +   + G   +     A  VF+++   G    +  Y+IL+  L  
Sbjct: 387 EMSHR--GLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCN 444

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G+++KAL +F  M+   ++++   ++  I+   ++G + +  +    +      P+V  
Sbjct: 445 NGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVT 504

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN +  GLC    +  A  L++  +      P    Y   I    R G+     E++ EM
Sbjct: 505 YNTMISGLCSKRLLQEAYALLKK-MKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM 563



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 168/387 (43%), Gaps = 16/387 (4%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P +  +  ++  +A  +  D  + + E+M++  +   +  Y  LI   C+  ++     L
Sbjct: 45  PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 104

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             +M + G          L+ G     ++  A  L+  +V+ GYR D   + ++I GL  
Sbjct: 105 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 164

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             +  +A  L +  VQ    P+  T   ++    + G  D    LL +ME  K  + AD+
Sbjct: 165 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK--IEADV 222

Query: 381 EKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             F   +  + K   +  AL++F+E++ KG   +V  Y+ L+  L   G    A  L   
Sbjct: 223 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 282

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M    +  N ++F+  I   V+ G  +EA + ++ +I+ S  P +  YN L  G C    
Sbjct: 283 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDR 342

Query: 498 IDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           +D A      M+ +DC  +V +      Y   I   C+S   E   E+  EM+  G   +
Sbjct: 343 LDKAKQMFEFMVSKDCFPDVVT------YNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 396

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNL 579
            V  + +I G+   G  + A+KVF  +
Sbjct: 397 TVTYTTLIQGLFHDGDCDNAQKVFKQM 423



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 141/339 (41%), Gaps = 55/339 (16%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------PELMD---------SQGRI 184
           + KG + N  +Y++L  CL     +  A Q+          P L+           +G+ 
Sbjct: 249 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKF 308

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  ++ + M +    PD+F Y +++        LD   +++E M       DV+ Y TL
Sbjct: 309 VEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 368

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK  RV  G ELFREM   G++ D   Y  LI+GL  +G    A  + K +V  G 
Sbjct: 369 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 428

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  Y+ ++ GLC   + +KA ++F+   + ++  D      ++    + G++D+   
Sbjct: 429 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDD--- 485

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
                                             D+F  L  KG   +V  YN ++  L 
Sbjct: 486 --------------------------------GWDLFCSLSLKGVKPNVVTYNTMISGLC 513

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
               +++A  L  KM+      NS +++  I+ H+  GD
Sbjct: 514 SKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 552



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 95/192 (49%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ +  E+  +M       D   YT +I+ L  + + D   +V+++M  D V  D+M Y 
Sbjct: 377 RVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYS 436

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            L+ GLC  G++ +  E+F  M+++ I +D  IY  +IEG+   GKV    DL   L   
Sbjct: 437 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 496

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + ++  YN++I GLC  +   +AY L +   +D   P+  T N L+      G     
Sbjct: 497 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAAS 556

Query: 363 FKLLAQMEKLKF 374
            +L+ +M   +F
Sbjct: 557 AELIREMRSCRF 568



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 96/211 (45%), Gaps = 3/211 (1%)

Query: 404 LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
           +K +   S+  +N L+ A+ ++ +    + L  KM+ L +     +++I I C      I
Sbjct: 39  VKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQI 98

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
             A     K++++   PS+   + L  G C    I  A+ LV D +  +   P    +  
Sbjct: 99  SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALV-DQMVEMGYRPDTITFTT 157

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I  +    +A + + +++ M Q GC PN V    +++G+CK G  + A  +   +   K
Sbjct: 158 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK 217

Query: 584 LLTEANTIVYDEILIEHMKKKTADLVLSGLK 614
           +  EA+ ++++ I+    K +  D  L+  K
Sbjct: 218 I--EADVVIFNTIIDSLCKYRHVDDALNLFK 246



 Score = 39.7 bits (91), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           E M   G++ +  ++   +     KP+V  Y  MI  L ++R L     + ++MK+D   
Sbjct: 475 EGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL 534

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            +   Y TLI    + G      EL REM+    + D +  G L+  ++ +G++ K+
Sbjct: 535 PNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG-LVANMLHDGRLDKS 590


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 177/417 (42%), Gaps = 41/417 (9%)

Query: 189 EILEKMRRNLCK--PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
           + L+  R N C+       Y  +IR      +LDA   +  EM  + ++ +      ++ 
Sbjct: 9   QALQLFRENPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQ 68

Query: 247 GLCKGGRVVRGHELFREMKENG-ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS-GY 304
           GLC+ GRV +  E F    E      D   Y  LI GL   G+V  A DL + +V + G 
Sbjct: 69  GLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGC 128

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           R +   YN+++ GLC+  + D A  +     + D APD  T N L+    ++GR+D    
Sbjct: 129 RPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDE--- 185

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALL 423
                                           AL  F ++  +GY    + +N ++  L 
Sbjct: 186 --------------------------------ALATFTQMTEEGYVPTLVSFNAIITGLC 213

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
               +  AL +F +M   +   N +++S+ I    +S  + EA +  ++++     P + 
Sbjct: 214 RARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLV 273

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           AY  L  G    G +D+A+ L+R  +      P    Y + I  +C+ G  +   E+  E
Sbjct: 274 AYTPLVLGFSAAGRLDSALGLLRRMVSQ-GCIPDVVTYTVVIDKLCKVGRVDDAHEIFRE 332

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           +    C PN V  SA+I G C+   ++E  KV   +  R  +   NT+++   +++ 
Sbjct: 333 LVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACRPNVVTYNTMIWGLSMVDR 389



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 161/374 (43%), Gaps = 39/374 (10%)

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
           A  + Y  LI G C    +     L REM   G+  +     ++++GL   G+V +A + 
Sbjct: 23  ASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEH 82

Query: 296 LKDLVDSGY-RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
               ++  + + D+  Y ++I GLC++ + D A+ LF   V                  A
Sbjct: 83  FDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMV------------------A 124

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVP 413
             G   N F   A ++ L                 K++R+  A  V  E + + ++  V 
Sbjct: 125 AGGCRPNAFTYNALVDGL----------------CKQDRLDAARAVITEARKRDFAPDVV 168

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN LM AL ++G V +AL  F +M         +SF+  I     +  + +A E  N++
Sbjct: 169 TYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEM 228

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           I+    P++  Y+ +  GLCK  ++D A  L+ D + +    P    Y   +L    +G 
Sbjct: 229 IDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLL-DRMVSEGCRPDLVAYTPLVLGFSAAGR 287

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
            +  + +L  M  +GC P+ V  + +I  +CK G +++A ++F  L   K     N + Y
Sbjct: 288 LDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANK--CSPNVVTY 345

Query: 594 DEILIEHMKKKTAD 607
             ++  + +    D
Sbjct: 346 SALIGGYCRASRVD 359



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 139/328 (42%), Gaps = 40/328 (12%)

Query: 182 GRIAEMLEILEKM-RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           GR+    ++  KM     C+P+ F Y A++  L  +  LDA   V  E +K     DV+ 
Sbjct: 110 GRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVT 169

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TL+  L + GRV      F +M E G +     +  +I GL    ++  A ++  +++
Sbjct: 170 YNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMI 229

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D  +  +L  Y+ +I GLC+  Q D+A +L +  V +   PD     PL++  +  GR+D
Sbjct: 230 DRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLD 289

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
           +   LL +M                                  +       V  Y +++ 
Sbjct: 290 SALGLLRRM----------------------------------VSQGCIPDVVTYTVVID 315

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII-EMSQV 479
            L ++G V  A  +F ++       N +++S  I  +  +  + E      K++ EM+  
Sbjct: 316 KLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEG----GKVMREMACR 371

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
           P+V  YN +  GL  +   + A  + R+
Sbjct: 372 PNVVTYNTMIWGLSMVDRNEEAYGMFRE 399



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 128/306 (41%), Gaps = 22/306 (7%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKM 194
           A   F       G + N  +YNAL   L + +   AA  V               I E  
Sbjct: 115 AFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAV---------------ITEAR 159

Query: 195 RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
           +R+   PDV  Y  ++  L     +D  L  + +M ++     ++++  +I GLC+  R+
Sbjct: 160 KRDF-APDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRL 218

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
               E+F EM +     +   Y V+I+GL    ++ +A  LL  +V  G R DL  Y  +
Sbjct: 219 ADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPL 278

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
           + G     + D A  L    V     PD  T   ++    ++GR+D+  ++  ++   K 
Sbjct: 279 VLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKC 338

Query: 375 SVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKAL 432
           S   ++  +   + G  +  R+     V  E+  +   +V  YN ++  L  +   ++A 
Sbjct: 339 S--PNVVTYSALIGGYCRASRVDEGGKVMREMACR--PNVVTYNTMIWGLSMVDRNEEAY 394

Query: 433 YLFGKM 438
            +F +M
Sbjct: 395 GMFREM 400


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 197/470 (41%), Gaps = 51/470 (10%)

Query: 163 SRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
           SR   F     +  L+DS G I   L +  +M    C P+   Y  ++  L  +      
Sbjct: 168 SRPTAFVYNTILKALVDS-GVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDA 226

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
           L++++EM    +  +V  Y  L+  LC  G++    +L   MK+ G L D   Y   + G
Sbjct: 227 LKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSG 286

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           L   G+V +A   L  L D G+   L  Y+ +I GL + ++FD+ +  ++  ++ +++PD
Sbjct: 287 LCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPD 346

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF--------------SVAADLEKFFEF-- 386
                 ++  CAE GR+++    L  M+K  F                  DLE+      
Sbjct: 347 VVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRS 406

Query: 387 --------LVGKEERIMM-----------ALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
                   L    + IM+           A+ +F+E+   G   +V  YN L+      G
Sbjct: 407 EMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREG 466

Query: 427 EVKKALYLFGKMR-------------GLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            +++A  LF KM              G N   +S S    +    +SG +L+A +    I
Sbjct: 467 RLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSI 526

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           I+   VP V  YN L  GLCK   +D A+ L ++ L      P E  Y   I  + R+  
Sbjct: 527 IDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKE-LQLKGISPDEITYGTLIDGLLRAHR 585

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
               + +   + Q G  P+  I ++++  +C+   L +A  ++ +   +K
Sbjct: 586 ENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKK 635



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 197/418 (47%), Gaps = 21/418 (5%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S GR A+ ++   +M     +P  F Y  +++ L     +   L ++  M       +  
Sbjct: 149 SAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRA 208

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  L+ GLCK G      ++F EM + GI+ +  IY VL+  L   GK+ +A  LL  +
Sbjct: 209 TYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSM 268

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D G   D   YN+ + GLC+V + ++A++   +      A      + L+    +  R 
Sbjct: 269 KDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRF 328

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGYSSVP---I 414
           D  F     M  L+ +++ D+  +   + G  E  RI  AL   + +K KG+  VP    
Sbjct: 329 DEGFGYYKTM--LERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGF--VPDTFC 384

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YN ++  L + G++++A  L  +M   NL ++S + +I I    + G + EA +  +++ 
Sbjct: 385 YNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMG 444

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVAS-------GPTEFKYALT-- 524
           E    P+V  YN L  G  + G ++ A ML     +GN  S       G  + + + +  
Sbjct: 445 EHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDSESLR 504

Query: 525 -ILH-VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
            ++H +C+SG+  K  ++L  +   G  P+ V  + +I+G+CK   L+ A ++F  L+
Sbjct: 505 KLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQ 562



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/395 (21%), Positives = 166/395 (42%), Gaps = 36/395 (9%)

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           + RN+  PDV  YT MIR  A    ++  L   + MKK     D   Y T++  LC  G 
Sbjct: 339 LERNI-SPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGD 397

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           + R H L  EM +N +++D     ++I GL   G V +A  +  ++ + G    +  YN+
Sbjct: 398 LERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNA 457

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           +I G  R  + ++A  LF                       EMG   + F        L+
Sbjct: 458 LIDGFYREGRLEEARMLFHKM--------------------EMGNNPSLF--------LR 489

Query: 374 FSVAADLEKFFEFL------VGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIG 426
            ++ A+  +  E L      + +  +++ A  +   +   G    V  YN L+  L +  
Sbjct: 490 LTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKAR 549

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            +  A+ LF +++   +  + +++   I   + +    +A      I++    PS++ YN
Sbjct: 550 NLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYN 609

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            + + LC++ ++  A+ L  D L    + P E +           G  +  +  L ++ Q
Sbjct: 610 SMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQ 669

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           E    +    +  + G+C+    ++A ++F  L+E
Sbjct: 670 EYGSISSNPYTIWLIGLCQVRRTDDALRIFHTLQE 704



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 89/185 (48%), Gaps = 2/185 (1%)

Query: 398 LDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
            D   + +  G  +S   +  L+ A    G    A+  F +M        +  ++  ++ 
Sbjct: 122 FDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKA 181

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
            V+SG IL A   +N+++     P+ A YN L  GLCK G    A+ +  + L +    P
Sbjct: 182 LVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEML-DRGIMP 240

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
               Y + +  +C +G+ ++ +++L  M  +GC P+EV  +A +SG+CK G + EA +  
Sbjct: 241 NVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRL 300

Query: 577 TNLRE 581
             L++
Sbjct: 301 VMLQD 305



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 49/216 (22%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           M   G++ +  ++L  +  +   PDV  Y  +I  L   RNLD  +R+++E++   +  D
Sbjct: 510 MCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPD 569

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
            + Y TLI GL +  R      LF+ + ++G     +IY  ++  L    K+ +A +L  
Sbjct: 570 EITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWL 629

Query: 298 DL-------------------------VDSGYRADLGI---YNSI--------IGGLCRV 321
           D                          +D G R  + I   Y SI        + GLC+V
Sbjct: 630 DYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQEYGSISSNPYTIWLIGLCQV 689

Query: 322 KQFDKAYKLFEVTVQD---DLAPDFSTVNPLLVCCA 354
           ++ D A ++F  T+Q+   D+ P          CCA
Sbjct: 690 RRTDDALRIFH-TLQEFGIDITP---------ACCA 715


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 119/535 (22%), Positives = 235/535 (43%), Gaps = 62/535 (11%)

Query: 110 ELSKLRR----VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRN 165
           +L +LRR    +TP  + ++L +  + + +   F WAG QKGY H F  Y+ L   L   
Sbjct: 56  DLKELRRSFNQITPFQLCKLLLLPLDVSTSMAIFQWAGSQKGYCHTFDVYHVLIDKLGAA 115

Query: 166 NLFRAADQVPELMDSQG---RIAEMLEILEKM-RRNL----------------CKPDVFA 205
             F+  D++   +  +G   R +  + I++   R NL                C+P   +
Sbjct: 116 KEFKVIDKLLLQIKEEGIAFRESLFICIMKYYGRANLPGQATRMLLDMKGVYCCEPTFKS 175

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  ++ +L +         V+ EM    V   V  +  ++  LC    V     L R+M 
Sbjct: 176 YNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMT 235

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           ++G + +  +Y  LI  L    +V +A  LL+++   G   D+  +N +I GLCR+ +  
Sbjct: 236 KHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIH 295

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM---------------- 369
           +  KL +  +     P+  T   L+     +G++D    LL ++                
Sbjct: 296 EGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFTILINGYV 355

Query: 370 --------------EKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SV 412
                         + +K     D+  F   + G  ++ +M  A+D+  ++   G + ++
Sbjct: 356 KSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNL 415

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             Y  L+    +  ++++A Y+  +M     E+N + +++ ++   ++G + +A +   +
Sbjct: 416 ITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGE 475

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVCR 530
           + +    P +  +N L  GLCK+   + A+ L RD L  G +A+  T   Y   I    R
Sbjct: 476 MSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVT---YNTLIHAFLR 532

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
            G  ++ ++++N+M   GCP +E+  + +I   CK G  E+A  +F  +  + L+
Sbjct: 533 GGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLV 587



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 190/452 (42%), Gaps = 36/452 (7%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
            +L  M ++ C P+   Y  +I  L+    ++  L++ EEM       DV  +  +I GL
Sbjct: 229 SLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGL 288

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD---------- 298
           C+  R+  G +L   M   G   +   YGVL+ GL   GKV +A  LL            
Sbjct: 289 CRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFT 348

Query: 299 ----------------------LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
                                 ++ +G R D+  +N++I GLC+      A  +      
Sbjct: 349 ILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSA 408

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
           +   P+  T   LL    +  +++    +L +M    F +           + K  ++  
Sbjct: 409 NGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPK 468

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           ALD+  E+  KG    +  +N L+  L ++   + AL L+  M    +  N+++++  I 
Sbjct: 469 ALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIH 528

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
             +  G I EA +  N ++          YN L K  CK+G  + A+ L  D +      
Sbjct: 529 AFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLF-DEMVRKDLV 587

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P+     L I  +CR G+    +E+L +M   G  P+ V  +++I+G+CK G + EA  +
Sbjct: 588 PSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNL 647

Query: 576 FTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           F  L+   +  + + I Y+ ++  H +    D
Sbjct: 648 FNKLQAEGI--QPDAITYNTLICWHCRAGMFD 677



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 163/386 (42%), Gaps = 36/386 (9%)

Query: 181 QGRIAEMLEIL-EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
            GR+ E    L +KM +N C+PDVF +  +I  L  +  + + + +  +M  +    +++
Sbjct: 357 SGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLI 416

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TL+ G CK  ++     +  EM   G  ++   Y VL+  L   GKV KA D+L ++
Sbjct: 417 TYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEM 476

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D G + D+  +N++I GLC+V + + A  L+   + D +  +  T N L+      G +
Sbjct: 477 SDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAI 536

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
               KL+  M                                   +G     +  YN L+
Sbjct: 537 QEALKLVNDM---------------------------------LFRGCPLDEIT-YNGLI 562

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            A  ++G  +KAL LF +M   +L  +++S ++ I      G +  A E    +I     
Sbjct: 563 KAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLA 622

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P V  YN L  GLCK+G I  A  L    L      P    Y   I   CR+G  +    
Sbjct: 623 PDVVTYNSLINGLCKMGNIREAFNLFNK-LQAEGIQPDAITYNTLICWHCRAGMFDDAYL 681

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCK 565
           +L    +    PN+V    ++S   K
Sbjct: 682 LLLRGVENAFIPNDVTWYILVSNFIK 707



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 191/431 (44%), Gaps = 40/431 (9%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +  + R+ E L++LE+M    C PDV  +  +I  L     +    ++ + M       +
Sbjct: 253 LSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPN 312

Query: 238 VMAYVTLIMGLCKGGRV---------------------VRGHE-----------LFREMK 265
            + Y  L+ GLC+ G+V                     + G+            L+ +M 
Sbjct: 313 DITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFTILINGYVKSGRLDEANAFLYDKMI 372

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           +NG   D   +  LI GL  +G +G A D++ D+  +G   +L  Y +++ G C+  Q +
Sbjct: 373 KNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLE 432

Query: 326 KA-YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           +A Y L E++ +     +    N LL    + G++     +L +M         D+  F 
Sbjct: 433 EAGYVLNEMSAKG-FELNIMGYNVLLRALCKNGKVPKALDMLGEMSDK--GCKPDIFTFN 489

Query: 385 EFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
             + G  K +R   AL ++ ++   G  ++   YN L+ A L  G +++AL L   M   
Sbjct: 490 TLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFR 549

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
              ++ ++++  I+   + G   +A    ++++    VPS  + N L  GLC++G++  A
Sbjct: 550 GCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNA 609

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           + L+RD + +    P    Y   I  +C+ G   +   + N++  EG  P+ +  + +I 
Sbjct: 610 LELLRDMI-HRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLIC 668

Query: 562 GMCKHGTLEEA 572
             C+ G  ++A
Sbjct: 669 WHCRAGMFDDA 679



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 156/379 (41%), Gaps = 53/379 (13%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG------------ 182
           A+ F +    + G + +  ++N L + L +  L  +A  +   M + G            
Sbjct: 363 ANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLL 422

Query: 183 -------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
                  ++ E   +L +M     + ++  Y  ++R L     +   L +  EM     +
Sbjct: 423 DGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCK 482

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            D+  + TLI GLCK  R      L+R+M  +G++ +   Y  LI   +  G + +A  L
Sbjct: 483 PDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKL 542

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
           + D++  G   D   YN +I   C++   +KA  LF+  V+ DL P   + N L+     
Sbjct: 543 VNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCR 602

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIY 415
           +G++ N  +LL  M  +   +A D                                V  Y
Sbjct: 603 VGKVCNALELLRDM--IHRGLAPD--------------------------------VVTY 628

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+  L ++G +++A  LF K++   ++ ++++++  I  H  +G   +A     + +E
Sbjct: 629 NSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVE 688

Query: 476 MSQVPSVAAYNCLTKGLCK 494
            + +P+   +  L     K
Sbjct: 689 NAFIPNDVTWYILVSNFIK 707



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 98/232 (42%), Gaps = 27/232 (11%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G   N  +YN L +   R                 G I E L+++  M    C  D   Y
Sbjct: 515 GVIANTVTYNTLIHAFLRG----------------GAIQEALKLVNDMLFRGCPLDEITY 558

Query: 207 TAMIRVLAAERNLDACLRVWEEM-KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
             +I+        +  L +++EM +KDLV +++   + LI GLC+ G+V    EL R+M 
Sbjct: 559 NGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNL-LINGLCRVGKVCNALELLRDMI 617

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
             G+  D   Y  LI GL   G + +A +L   L   G + D   YN++I   CR   FD
Sbjct: 618 HRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFD 677

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
            AY L    V++   P+  T   L+          NF K + +   + F  A
Sbjct: 678 DAYLLLLRGVENAFIPNDVTWYILV---------SNFIKEIGKENGISFGTA 720



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 36/75 (48%)

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           PT + + + +  +C   E +    +L +MT+ GC PN V+   +I  + K   + EA K+
Sbjct: 206 PTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKL 265

Query: 576 FTNLRERKLLTEANT 590
              +     L + +T
Sbjct: 266 LEEMFLMGCLPDVDT 280


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/479 (23%), Positives = 196/479 (40%), Gaps = 76/479 (15%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV-PELMDS------------------QGRI 184
           K+ G++    +Y AL     R      A+++  E+ DS                  +GR+
Sbjct: 257 KELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRM 316

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           +  + + E MR   C+P+V+ Y A+++       +   + + ++M++  VE DV+ Y  L
Sbjct: 317 SGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLL 376

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G C  G +     L R M+ NG+  D+  Y VLI+ L   GKV +AC L   L   G 
Sbjct: 377 IRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGI 436

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           R +   +N++I GLC+  +FD A    E  +    APD  T +P +         +N  K
Sbjct: 437 RPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFI---------ENLCK 487

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE 424
                E L F                         + E L+     S   Y I++  L  
Sbjct: 488 TKGSQEGLFF-------------------------IDEMLQKDVKPSTVNYTIVINRLFN 522

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA- 483
                 A  ++G+M       + ++++ +++ +   G + EA    N + EM +  ++  
Sbjct: 523 ERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEA---ENVVTEMKKCRTIVD 579

Query: 484 --AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY----------------ALTI 525
             AYN L  G   IG+ D A+ +++   G VAS P  F +                 L  
Sbjct: 580 AMAYNTLIDGHTSIGQTDRAVTILKHMTG-VASMPNHFTFFILLRHLLQRRLAEHVPLKA 638

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
             V ++ E   + E+   M +   P +     +I+ G  +   L+E   + + ++E  L
Sbjct: 639 TSVWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENL 697



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/500 (20%), Positives = 193/500 (38%), Gaps = 79/500 (15%)

Query: 187 MLEILEKMRRNLC-KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           ML +   M R+    P    Y A+IR L    +L    R    M +     D   + +LI
Sbjct: 112 MLRLFAHMYRHAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLI 171

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV----- 300
           +G C+  ++   H+LF +M   G   D   Y  LIEG    G++ +A +L +++      
Sbjct: 172 LGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQPDMY 231

Query: 301 --------------------------DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
                                     + G+R     Y +++   CR ++ ++A K+    
Sbjct: 232 THAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEM 291

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-----EKLKFSVAADLEKFFEFLVG 389
               L P   T   ++      GRM    ++   M     E   ++  A ++ F     G
Sbjct: 292 FDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCN--AG 349

Query: 390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
           K  + M  LD   E   +    V  YN+L+      G +  A  L   M G  L  +  +
Sbjct: 350 KVYKAMALLDQMRECGVE--PDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYT 407

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           +++ I    ++G + EAC   + +      P+   +N +  GLCK G+ D A   + + +
Sbjct: 408 YNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMI 467

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ----------------------- 546
            +    P  + Y+  I ++C++  +++ +  ++EM Q                       
Sbjct: 468 -SAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNY 526

Query: 547 ------------EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
                       +GC P+ V  +  +   C  G L+EA  V T +++ + + +A  + Y+
Sbjct: 527 GLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDA--MAYN 584

Query: 595 EILIEHMKKKTADLVLSGLK 614
            ++  H      D  ++ LK
Sbjct: 585 TLIDGHTSIGQTDRAVTILK 604



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 66/162 (40%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           +A++ E+ E M++N        Y +++   + ER LD    +   MK++ +  +   Y  
Sbjct: 647 LADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNA 706

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+   CK         L   M  +G L +   Y  L+ GL  EG+  +A ++ +      
Sbjct: 707 LVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSSRWKE 766

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           Y  D  ++  II G  R    D  + +  +  Q    P   T
Sbjct: 767 YNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQMKCKPSDET 808


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 190/402 (47%), Gaps = 7/402 (1%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           V  +M   G+ A  +E+L KM     K D   Y+ +I  L  + +LD    ++ EM+   
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 293

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
            +AD++ Y TLI G C  GR   G +L R+M +  I  +   + VLI+  V EGK+ +A 
Sbjct: 294 FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREAD 353

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            LLK+++  G   +   YNS+I G C+  + ++A ++ ++ +     PD  T N L+   
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGY 413

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS- 410
            +  R+D+  +L  +M  L+  V A+   +   + G  +  ++ +A  +F+E+  +    
Sbjct: 414 CKANRIDDGLELFREMS-LR-GVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP 471

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            +  Y IL+  L + GE++KAL +FGK+    +E++   + I I     +  + +A +  
Sbjct: 472 DIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLF 531

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
             +          AYN +   LC+   +  A +L R  +      P E  Y + I     
Sbjct: 532 CSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRK-MTEEGHAPDELTYNILIRAHLG 590

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
             +A    E++ EM   G P +      +I+ M   G L+++
Sbjct: 591 DDDATTAAELIEEMKSSGFPADVSTVKMVIN-MLSSGELDKS 631



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 194/405 (47%), Gaps = 12/405 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R++E LE++++M     KP +     ++  L     +   + + + M +   + + + Y 
Sbjct: 173 RVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYG 232

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++  +CK G+     EL R+M+E  I +D   Y ++I+GL  +G +  A +L  ++   
Sbjct: 233 PVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIK 292

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G++AD+  YN++IGG C   ++D   KL    ++  ++P+  T + L+    + G++   
Sbjct: 293 GFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREA 352

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILM 419
            +LL +M  ++  +A +   +   + G  KE R+  A+ + + +  KG    +  +NIL+
Sbjct: 353 DQLLKEM--MQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILI 410

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               +   +   L LF +M    +  N+++++  +Q   +SG +  A +   +++     
Sbjct: 411 NGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVR 470

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK---YALTILHVCRSGEAEK 536
           P + +Y  L  GLC  GE++ A+    +  G +     E     Y + I  +C + + + 
Sbjct: 471 PDIVSYKILLDGLCDNGELEKAL----EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDD 526

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
             ++   +  +G   +    + +IS +C+  +L +A  +F  + E
Sbjct: 527 AWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTE 571



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 178/387 (45%), Gaps = 6/387 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P V  +  +   +A  +  +  L + ++M+   +   +     +I   C+  ++      
Sbjct: 86  PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             ++ + G   D  I+  L+ GL  E +V +A +L+  +V+ G++  L   N+++ GLC 
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             +   A  L +  V+    P+  T  P+L    + G+     +LL +ME+   ++  D 
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEER--NIKLDA 263

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGK 437
            K+   + G  K+  +  A ++F E++ KG+ + +  YN L+G     G       L   
Sbjct: 264 VKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRD 323

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M    +  N ++FS+ I   V+ G + EA +   ++++    P+   YN L  G CK   
Sbjct: 324 MIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENR 383

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           ++ A+ +V D + +    P    + + I   C++   +  +E+  EM+  G   N V  +
Sbjct: 384 LEEAIQMV-DLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYN 442

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKL 584
            ++ G C+ G LE A+K+F  +  R++
Sbjct: 443 TLVQGFCQSGKLEVAKKLFQEMVSRRV 469



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 153/351 (43%), Gaps = 45/351 (12%)

Query: 99  NQFQW--GPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGK------------ 144
           N  +W  G +++ ++ K R+++P++V   + +++        F   GK            
Sbjct: 310 NAGRWDDGAKLLRDMIK-RKISPNVVTFSVLIDS--------FVKEGKLREADQLLKEMM 360

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+G   N  +YN+L     + N    A Q+ +LM S+G                C PD+ 
Sbjct: 361 QRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG----------------CDPDIM 404

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            +  +I        +D  L ++ EM    V A+ + Y TL+ G C+ G++    +LF+EM
Sbjct: 405 TFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEM 464

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
               +  D   Y +L++GL   G++ KA ++   +  S    D+GIY  II G+C   + 
Sbjct: 465 VSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKV 524

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           D A+ LF       +  D    N ++   +E+ R D+  K      K+     A  E  +
Sbjct: 525 DDAWDLFCSLPLKGVKLDARAYNIMI---SELCRKDSLSKADILFRKMTEEGHAPDELTY 581

Query: 385 EFLVGK---EERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKAL 432
             L+     ++    A ++ EE+K  G+ +      ++  +L  GE+ K+ 
Sbjct: 582 NILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSSGELDKSF 632



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 136/322 (42%), Gaps = 9/322 (2%)

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           L  GLVG  K   A DL +D++ S     +  +N +   + + KQ++    L +      
Sbjct: 60  LSSGLVGI-KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKG 118

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMM 396
           +A    T++ ++ C     ++   F  + ++ KL +    D   F   L G   E R+  
Sbjct: 119 IAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYE--PDTVIFNTLLNGLCLECRVSE 176

Query: 397 ALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           AL++ + +   G+    I  N L+  L   G+V  A+ L  +M     + N +++   + 
Sbjct: 177 ALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLN 236

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
              +SG    A E   K+ E +       Y+ +  GLCK G +D A  L  + +      
Sbjct: 237 VMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE-MEIKGFK 295

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
                Y   I   C +G  +   ++L +M +    PN V  S +I    K G L EA ++
Sbjct: 296 ADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQL 355

Query: 576 FTNLRERKLLTEANTIVYDEIL 597
              + +R +    NTI Y+ ++
Sbjct: 356 LKEMMQRGI--APNTITYNSLI 375


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/432 (25%), Positives = 191/432 (44%), Gaps = 24/432 (5%)

Query: 178 MDSQGRIAEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           M  +G     L +L KM   +   P+V  Y+A+I  L  +        ++ EM++  +  
Sbjct: 229 MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFP 288

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D+  Y ++I+G C  GR     +L +EM E  I  D   Y  LI   V EGK  +A +L 
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELY 348

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            +++  G   +   Y+S+I G C+  + D A  +F +      +P+  T N L+      
Sbjct: 349 DEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA 408

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFE-----FLVGKEERIMMALDVFEELKGKGYS- 410
            R+D+  +LL +M +    + AD   +       +LVG    +  ALD+ +E+   G   
Sbjct: 409 KRIDDGMELLHEMTET--GLVADTTTYNTLIHGFYLVGD---LNAALDLLQEMISSGLCP 463

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGL-----------NLEVNSLSFSIAIQCHVE 459
            +   + L+  L + G++K AL +F  M+              +E +  +++I I   + 
Sbjct: 464 DIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLIN 523

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
            G  LEA E + ++     VP    Y+ +  GLCK   +D A  +  D +G+ +  P   
Sbjct: 524 EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF-DSMGSKSFSPNVV 582

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            +   I   C++G  +  +E+  EM + G   N +    +I G  K G +  A  +F  +
Sbjct: 583 TFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642

Query: 580 RERKLLTEANTI 591
               +  +  TI
Sbjct: 643 ISSGVYPDTITI 654



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/450 (22%), Positives = 204/450 (45%), Gaps = 21/450 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + R++E L +  +M    C+P+V  +T ++  L  E  +   + + + M +D ++   + 
Sbjct: 162 EDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y T++ G+CK G  V    L R+M+E + I+ +  IY  +I+ L  +G+   A +L  ++
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            + G   DL  YNS+I G C   ++  A +L +  ++  ++PD  T N L+    + G+ 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
               +L  +M  L   +  +   +   + G  K+ R+  A  +F  +  KG S ++  +N
Sbjct: 342 FEAEELYDEM--LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFN 399

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+        +   + L  +M    L  ++ +++  I      GD+  A +   ++I  
Sbjct: 400 TLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISS 459

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV----ASGPTEF------KYALTIL 526
              P +   + L  GLC  G++  A+ + +    +     AS P          Y + I 
Sbjct: 460 GLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILIS 519

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
            +   G+  +  E+  EM   G  P+ +  S++I G+CK   L+EA ++F ++  +    
Sbjct: 520 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSF-- 577

Query: 587 EANTIVYDEILIEHMKKKTADLVLSGLKFF 616
             N + +  ++  + K    D    GL+ F
Sbjct: 578 SPNVVTFTTLINGYCKAGRVD---DGLELF 604



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 185/406 (45%), Gaps = 17/406 (4%)

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
           ++ + +KM R   + D++++T +I+   +   L   L  + ++ K  +  DV+ + TL+ 
Sbjct: 98  VISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLH 157

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC   RV     LF +M E     +   +  L+ GL  EG++ +A  LL  +++ G + 
Sbjct: 158 GLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQP 217

Query: 307 DLGIYNSIIGGLCR----VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
               Y +I+ G+C+    V   +   K+ EV+    + P+    + ++    + GR  + 
Sbjct: 218 TQITYGTIVDGMCKKGDTVSALNLLRKMEEVS---HIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILM 419
             L  +M++    +  DL  +   +VG     R   A  + +E+  +  S  V  YN L+
Sbjct: 275 QNLFTEMQEK--GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALI 332

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            A ++ G+  +A  L+ +M    +  N++++S  I    +   +  A      +      
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDC--LGNVASGPTEFKYALTILHVCRSGEAEKI 537
           P++  +N L  G C    ID  M L+ +    G VA   T   Y   I      G+    
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTT---YNTLIHGFYLVGDLNAA 449

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
           +++L EM   G  P+ V C  ++ G+C +G L++A ++F  +++ K
Sbjct: 450 LDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G+  E  E+ E+M      PD   Y++MI  L  +  LD   ++++ M       +V+
Sbjct: 523 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVV 582

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            + TLI G CK GRV  G ELF EM   GI+ +   Y  LI G    G +  A D+ +++
Sbjct: 583 TFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
           + SG   D     +++ GL   ++  +A  + E
Sbjct: 643 ISSGVYPDTITIRNMLTGLWSKEELKRAVAMLE 675



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 3/202 (1%)

Query: 397 ALDVFEE-LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A+D+F + L+ +   SV  +  LMG ++ +      + L+ KM    +  +  SF+I I+
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIK 122

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
           C      +  A     KI ++   P V  +N L  GLC    +  A+ L    +      
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQ-MFETTCR 181

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    +   +  +CR G   + + +L+ M ++G  P ++    I+ GMCK G    A  +
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNL 241

Query: 576 FTNLRERKLLTEANTIVYDEIL 597
              + E   +   N ++Y  I+
Sbjct: 242 LRKMEEVSHII-PNVVIYSAII 262



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 89/199 (44%), Gaps = 11/199 (5%)

Query: 186 EMLEILEKMRRNL--------CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           EM ++++K +++L         +PDV  Y  +I  L  E        ++EEM    +  D
Sbjct: 486 EMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 545

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
            + Y ++I GLCK  R+    ++F  M       +   +  LI G    G+V    +L  
Sbjct: 546 TITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFC 605

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           ++   G  A+   Y ++I G  +V   + A  +F+  +   + PD  T+  +L     + 
Sbjct: 606 EMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML---TGLW 662

Query: 358 RMDNFFKLLAQMEKLKFSV 376
             +   + +A +EKL+ S+
Sbjct: 663 SKEELKRAVAMLEKLQMSM 681



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 59/119 (49%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q R+ E  ++ + M      P+V  +T +I        +D  L ++ EM +  + A+ + 
Sbjct: 559 QSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAIT 618

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y+TLI G  K G +    ++F+EM  +G+  D      ++ GL  + ++ +A  +L+ L
Sbjct: 619 YITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/432 (25%), Positives = 191/432 (44%), Gaps = 24/432 (5%)

Query: 178 MDSQGRIAEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           M  +G     L +L KM   +   P+V  Y+A+I  L  +        ++ EM++  +  
Sbjct: 229 MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFP 288

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D+  Y ++I+G C  GR     +L +EM E  I  D   Y  LI   V EGK  +A +L 
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELY 348

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            +++  G   +   Y+S+I G C+  + D A  +F +      +P+  T N L+      
Sbjct: 349 DEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA 408

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFE-----FLVGKEERIMMALDVFEELKGKGYS- 410
            R+D+  +LL +M +    + AD   +       +LVG    +  ALD+ +E+   G   
Sbjct: 409 KRIDDGMELLHEMTET--GLVADTTTYNTLIHGFYLVGD---LNAALDLLQEMISSGLCP 463

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGL-----------NLEVNSLSFSIAIQCHVE 459
            +   + L+  L + G++K AL +F  M+              +E +  +++I I   + 
Sbjct: 464 DIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLIN 523

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
            G  LEA E + ++     VP    Y+ +  GLCK   +D A  +  D +G+ +  P   
Sbjct: 524 EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF-DSMGSKSFSPNVV 582

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            +   I   C++G  +  +E+  EM + G   N +    +I G  K G +  A  +F  +
Sbjct: 583 TFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642

Query: 580 RERKLLTEANTI 591
               +  +  TI
Sbjct: 643 ISSGVYPDTITI 654



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/450 (22%), Positives = 204/450 (45%), Gaps = 21/450 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + R++E L +  +M    C+P+V  +T ++  L  E  +   + + + M +D ++   + 
Sbjct: 162 EDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y T++ G+CK G  V    L R+M+E + I+ +  IY  +I+ L  +G+   A +L  ++
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            + G   DL  YNS+I G C   ++  A +L +  ++  ++PD  T N L+    + G+ 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
               +L  +M  L   +  +   +   + G  K+ R+  A  +F  +  KG S ++  +N
Sbjct: 342 FEAEELYDEM--LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFN 399

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+        +   + L  +M    L  ++ +++  I      GD+  A +   ++I  
Sbjct: 400 TLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISS 459

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV----ASGPTEF------KYALTIL 526
              P +   + L  GLC  G++  A+ + +    +     AS P          Y + I 
Sbjct: 460 GLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILIS 519

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
            +   G+  +  E+  EM   G  P+ +  S++I G+CK   L+EA ++F ++  +    
Sbjct: 520 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSF-- 577

Query: 587 EANTIVYDEILIEHMKKKTADLVLSGLKFF 616
             N + +  ++  + K    D    GL+ F
Sbjct: 578 SPNVVTFTTLINGYCKAGRVD---DGLELF 604



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 184/406 (45%), Gaps = 17/406 (4%)

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
           ++ + +KM R   + D++++  +I+   +   L   L  + ++ K  +  DV+ + TL+ 
Sbjct: 98  VISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLH 157

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC   RV     LF +M E     +   +  L+ GL  EG++ +A  LL  +++ G + 
Sbjct: 158 GLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQP 217

Query: 307 DLGIYNSIIGGLCR----VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
               Y +I+ G+C+    V   +   K+ EV+    + P+    + ++    + GR  + 
Sbjct: 218 TQITYGTIVDGMCKKGDTVSALNLLRKMEEVS---HIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILM 419
             L  +M++    +  DL  +   +VG     R   A  + +E+  +  S  V  YN L+
Sbjct: 275 QNLFTEMQEK--GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALI 332

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            A ++ G+  +A  L+ +M    +  N++++S  I    +   +  A      +      
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDC--LGNVASGPTEFKYALTILHVCRSGEAEKI 537
           P++  +N L  G C    ID  M L+ +    G VA   T   Y   I      G+    
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTT---YNTLIHGFYLVGDLNAA 449

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
           +++L EM   G  P+ V C  ++ G+C +G L++A ++F  +++ K
Sbjct: 450 LDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G+  E  E+ E+M      PD   Y++MI  L  +  LD   ++++ M       +V+
Sbjct: 523 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVV 582

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            + TLI G CK GRV  G ELF EM   GI+ +   Y  LI G    G +  A D+ +++
Sbjct: 583 TFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
           + SG   D     +++ GL   ++  +A  + E
Sbjct: 643 ISSGVYPDTITIRNMLTGLWSKEELKRAVAMLE 675



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 87/202 (43%), Gaps = 3/202 (1%)

Query: 397 ALDVFEE-LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A+D+F + L+ +   SV  +  LMG ++ +      + L+ KM    +  +  SF+I I+
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIK 122

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
           C      +  A     KI ++   P V  +  L  GLC    +  A+ L    +      
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQ-MFETTCR 181

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    +   +  +CR G   + + +L+ M ++G  P ++    I+ GMCK G    A  +
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNL 241

Query: 576 FTNLRERKLLTEANTIVYDEIL 597
              + E   +   N ++Y  I+
Sbjct: 242 LRKMEEVSHII-PNVVIYSAII 262



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 89/199 (44%), Gaps = 11/199 (5%)

Query: 186 EMLEILEKMRRNL--------CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           EM ++++K +++L         +PDV  Y  +I  L  E        ++EEM    +  D
Sbjct: 486 EMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 545

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
            + Y ++I GLCK  R+    ++F  M       +   +  LI G    G+V    +L  
Sbjct: 546 TITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFC 605

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           ++   G  A+   Y ++I G  +V   + A  +F+  +   + PD  T+  +L     + 
Sbjct: 606 EMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML---TGLW 662

Query: 358 RMDNFFKLLAQMEKLKFSV 376
             +   + +A +EKL+ S+
Sbjct: 663 SKEELKRAVAMLEKLQMSM 681



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 59/119 (49%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q R+ E  ++ + M      P+V  +T +I        +D  L ++ EM +  + A+ + 
Sbjct: 559 QSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAIT 618

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y+TLI G  K G +    ++F+EM  +G+  D      ++ GL  + ++ +A  +L+ L
Sbjct: 619 YITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677


>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
 gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
          Length = 900

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/474 (23%), Positives = 194/474 (40%), Gaps = 100/474 (21%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL-- 248
            E MR    +P+ F +T+++   A  R++   L   EEMK + +E  ++ Y  LI G   
Sbjct: 286 FENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAK 345

Query: 249 ---------------------------------CKGGRVVRGHELFREMKENGI------ 269
                                            C+ G + R  EL  EM+E+GI      
Sbjct: 346 INDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDV 405

Query: 270 -------------------LIDR----------AIYGVLIEGLVGEGKVGKACDLLKDLV 300
                              + +R            YG L+   V  GKV KA  + K++ 
Sbjct: 406 YHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEME 465

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + +   Y+ +I G   +  F  A+ +FE  ++  L PD +  N L+    +MG MD
Sbjct: 466 SCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMD 525

Query: 361 NFFKLLAQMEKLK--------------FSVAADLEKFFEFLVGKEERIMMALDVFEELKG 406
               +L +M+K +              ++VA D++               ALD  + ++ 
Sbjct: 526 RAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKS--------------ALDTLDLMRR 571

Query: 407 KG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G   +V  YN L+  L+   +V++A+ +  KM    +  N  +++I ++ +  SGDI +
Sbjct: 572 SGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGK 631

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A E   KI E      V  Y  L +  CK G + +A+ + R+         T F Y + I
Sbjct: 632 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT-FIYNILI 690

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
               R G+  +  +++ +M ++G PPN    ++ I+  CK G ++ A KV   +
Sbjct: 691 DGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEM 744



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 16/217 (7%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           +YNAL + L R +                ++   + +L+KM      P+   YT ++R  
Sbjct: 580 TYNALIHGLVRKH----------------KVQRAVSVLDKMSIAGITPNEHTYTIIMRGY 623

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
           AA  ++      + ++K+  ++ DV  Y TL+   CK GR+     + REM    I  + 
Sbjct: 624 AASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT 683

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
            IY +LI+G    G V +A DL+K + + G   ++  Y S I   C+     +A K+ E 
Sbjct: 684 FIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEE 743

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
            V   L P+  T   L+   A +   D   K   +M+
Sbjct: 744 MVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMK 780



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 109/251 (43%), Gaps = 7/251 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +   L+ L+ MRR+ C P V  Y A+I  L  +  +   + V ++M    +  +   Y
Sbjct: 557 GDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTY 616

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++ G    G + +  E F ++KE+G+ +D  IY  L+      G++  A  + +++  
Sbjct: 617 TIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSF 676

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                +  IYN +I G  R     +A  L +   +D + P+  T    +  C + G M  
Sbjct: 677 QKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQR 736

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM---ALDVFEELKGKGYS-SVPIYNI 417
             K++ +M  +         K +  L+    R+ +   AL  FEE+K  G       Y+ 
Sbjct: 737 AEKVIEEMVDVGLKPNV---KTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHC 793

Query: 418 LMGALLEIGEV 428
           L+ +LL    V
Sbjct: 794 LVTSLLSRATV 804



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 52/109 (47%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + E  +++++M+ +   P++  YT+ I       ++    +V EEM    ++ +V  
Sbjct: 696 RGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKT 755

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
           Y TLI G  +     R  + F EMK  G+  D A Y  L+  L+    V
Sbjct: 756 YTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATV 804


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/432 (25%), Positives = 191/432 (44%), Gaps = 24/432 (5%)

Query: 178 MDSQGRIAEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           M  +G     L +L KM   +   P+V  Y+A+I  L  +        ++ EM++  +  
Sbjct: 229 MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFP 288

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D+  Y ++I+G C  GR     +L +EM E  I  D   Y  LI   V EGK  +A +L 
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELY 348

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            +++  G   +   Y+S+I G C+  + D A  +F +      +P+  T N L+      
Sbjct: 349 DEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA 408

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFE-----FLVGKEERIMMALDVFEELKGKGYS- 410
            R+D+  +LL +M +    + AD   +       +LVG    +  ALD+ +E+   G   
Sbjct: 409 KRIDDGMELLHEMTET--GLVADTTTYNTLIHGFYLVGD---LNAALDLLQEMISSGLCP 463

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGL-----------NLEVNSLSFSIAIQCHVE 459
            +   + L+  L + G++K AL +F  M+              +E +  +++I I   + 
Sbjct: 464 DIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLIN 523

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
            G  LEA E + ++     VP    Y+ +  GLCK   +D A  +  D +G+ +  P   
Sbjct: 524 EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF-DSMGSKSFSPNVV 582

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            +   I   C++G  +  +E+  EM + G   N +    +I G  K G +  A  +F  +
Sbjct: 583 TFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642

Query: 580 RERKLLTEANTI 591
               +  +  TI
Sbjct: 643 ISSGVYPDTITI 654



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/450 (22%), Positives = 204/450 (45%), Gaps = 21/450 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + R++E L +  +M    C+P+V  +T ++  L  E  +   + + + M +D ++   + 
Sbjct: 162 EDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y T++ G+CK G  V    L R+M+E + I+ +  IY  +I+ L  +G+   A +L  ++
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            + G   DL  YNS+I G C   ++  A +L +  ++  ++PD  T N L+    + G+ 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
               +L  +M  L   +  +   +   + G  K+ R+  A  +F  +  KG S ++  +N
Sbjct: 342 FEAEELYDEM--LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFN 399

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+        +   + L  +M    L  ++ +++  I      GD+  A +   ++I  
Sbjct: 400 TLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISS 459

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV----ASGPTEF------KYALTIL 526
              P +   + L  GLC  G++  A+ + +    +     AS P          Y + I 
Sbjct: 460 GLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILIS 519

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
            +   G+  +  E+  EM   G  P+ +  S++I G+CK   L+EA ++F ++  +    
Sbjct: 520 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSF-- 577

Query: 587 EANTIVYDEILIEHMKKKTADLVLSGLKFF 616
             N + +  ++  + K    D    GL+ F
Sbjct: 578 SPNVVTFTTLINGYCKAGRVD---DGLELF 604



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 185/406 (45%), Gaps = 17/406 (4%)

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
           ++ + +KM R   + D++++T +I+   +   L   L  + ++ K  +  DV+ + TL+ 
Sbjct: 98  VISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLH 157

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC   RV     LF +M E     +   +  L+ GL  EG++ +A  LL  +++ G + 
Sbjct: 158 GLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQP 217

Query: 307 DLGIYNSIIGGLCR----VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
               Y +I+ G+C+    V   +   K+ EV+    + P+    + ++    + GR  + 
Sbjct: 218 TQITYGTIVDGMCKKGDTVSALNLLRKMEEVS---HIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILM 419
             L  +M++    +  DL  +   +VG     R   A  + +E+  +  S  V  YN L+
Sbjct: 275 QNLFTEMQEK--GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALI 332

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            A ++ G+  +A  L+ +M    +  N++++S  I    +   +  A      +      
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDC--LGNVASGPTEFKYALTILHVCRSGEAEKI 537
           P++  +N L  G C    ID  M L+ +    G VA   T   Y   I      G+    
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTT---YNTLIHGFYLVGDLNAA 449

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
           +++L EM   G  P+ V C  ++ G+C +G L++A ++F  +++ K
Sbjct: 450 LDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G+  E  E+ E+M      PD   Y++MI  L  +  LD   ++++ M       +V+
Sbjct: 523 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVV 582

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            + TLI G CK GRV  G ELF EM   GI+ +   Y  LI G    G +  A D+ +++
Sbjct: 583 TFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
           + SG   D     +++ GL   ++  +A  + E
Sbjct: 643 ISSGVYPDTITIRNMLTGLWSKEELKRAVAMLE 675



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 3/202 (1%)

Query: 397 ALDVFEE-LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A+D+F + L+ +   SV  +  LMG ++ +      + L+ KM    +  +  SF+I I+
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIK 122

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
           C      +  A     K+ ++   P V  +N L  GLC    +  A+ L    +      
Sbjct: 123 CFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQ-MFETTCR 181

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    +   +  +CR G   + + +L+ M ++G  P ++    I+ GMCK G    A  +
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNL 241

Query: 576 FTNLRERKLLTEANTIVYDEIL 597
              + E   +   N ++Y  I+
Sbjct: 242 LRKMEEVSHII-PNVVIYSAII 262



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 89/199 (44%), Gaps = 11/199 (5%)

Query: 186 EMLEILEKMRRNL--------CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           EM ++++K +++L         +PDV  Y  +I  L  E        ++EEM    +  D
Sbjct: 486 EMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 545

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
            + Y ++I GLCK  R+    ++F  M       +   +  LI G    G+V    +L  
Sbjct: 546 TITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFC 605

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           ++   G  A+   Y ++I G  +V   + A  +F+  +   + PD  T+  +L     + 
Sbjct: 606 EMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML---TGLW 662

Query: 358 RMDNFFKLLAQMEKLKFSV 376
             +   + +A +EKL+ S+
Sbjct: 663 SKEELKRAVAMLEKLQMSM 681



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 59/119 (49%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q R+ E  ++ + M      P+V  +T +I        +D  L ++ EM +  + A+ + 
Sbjct: 559 QSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAIT 618

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y+TLI G  K G +    ++F+EM  +G+  D      ++ GL  + ++ +A  +L+ L
Sbjct: 619 YITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677


>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
 gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/481 (24%), Positives = 210/481 (43%), Gaps = 45/481 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADV 238
           S   I+   E+ + M +     +V  +  ++     E  L+  L + E M  +  V  D 
Sbjct: 181 SSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDN 240

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + Y T++  + K GR+    EL  +MK+NG++ +R  Y  L+ G    G + +A  +++ 
Sbjct: 241 VTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVEL 300

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +  +    DL  YN +I GLC      +  +L +      L PD  T N L+  C E+G 
Sbjct: 301 MKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGL 360

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKF-FEFLVGKEERIMMALDVFEELKGKGYS-SVPIYN 416
                KL+ QME               ++L  +E+R  +   V E +   G+S  +  Y+
Sbjct: 361 SLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYH 420

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC-------------------- 456
            L+ A L++G++  AL +  +M    +++N+++ +  +                      
Sbjct: 421 TLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKR 480

Query: 457 -----HVESGDIL----------EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
                 V  G ++          +A E  +++ ++   P+V+ +N L  GLC  G+ + A
Sbjct: 481 GFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELA 540

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           M    D L      P +  +   IL  C+ G  EK  E  NE  +    P+   C+ +++
Sbjct: 541 MEKF-DELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLN 599

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL---IEHMKKKTADLVLSGLKFFGL 618
           G+CK G  E+A   F  L E +   E +T+ Y+ ++    +  K K A  +LS ++  GL
Sbjct: 600 GLCKEGMTEKALNFFNTLIEER---EVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGL 656

Query: 619 E 619
           E
Sbjct: 657 E 657



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 197/437 (45%), Gaps = 24/437 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K+ G   N  +YN L Y   +                 G + E  +I+E M++    PD+
Sbjct: 267 KKNGLVPNRVTYNNLVYGYCK----------------LGSLKEAFQIVELMKQTNVLPDL 310

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  +I  L    ++   L + + MK   ++ DV+ Y TLI G  + G  +   +L  +
Sbjct: 311 CTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQ 370

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD-SGYRADLGIYNSIIGGLCRVK 322
           M+ +G+  ++  + + ++ L  E K       +K+LVD  G+  D+  Y+++I    +V 
Sbjct: 371 MENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVG 430

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
               A ++     Q  +  +  T+N +L    +  ++D    LL    K  F V  D   
Sbjct: 431 DLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIV--DEVT 488

Query: 383 FFEFLVG--KEERIMMALDVFEELKG-KGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
           +   ++G  +EE++  AL++++E+K  K   +V  +N L+G L   G+ + A+  F ++ 
Sbjct: 489 YGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELA 548

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              L  +  +F+  I  + + G + +A E +N+ I+ S  P     N L  GLCK G  +
Sbjct: 549 ESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTE 608

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A+      +           Y   I   C+  + ++  ++L+EM ++G  P+    ++ 
Sbjct: 609 KALNFFNTLIEEREVDTV--TYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSF 666

Query: 560 ISGMCKHGTLEEARKVF 576
           IS + + G L E  ++ 
Sbjct: 667 ISLLMEDGKLSETDELL 683



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/447 (23%), Positives = 202/447 (45%), Gaps = 15/447 (3%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           M  +GR++++ E+L  M++N   P+   Y  ++       +L    ++ E MK+  V  D
Sbjct: 250 MSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPD 309

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           +  Y  LI GLC  G +  G EL   MK   +  D   Y  LI+G    G   +A  L++
Sbjct: 310 LCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLME 369

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAY-KLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            + + G +A+   +N  +  LC+ ++ +    K+ E+      +PD  T + L+    ++
Sbjct: 370 QMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKV 429

Query: 357 GRMDNFFKLLAQMEKLKFSV-AADLEKFFEFLVGKEERIMMALDVFEELKGKGY--SSVP 413
           G +    +++ +M +    +    L    + L  KE ++  A ++      +G+    V 
Sbjct: 430 GDLSGALEMMREMGQKGIKMNTITLNTILDALC-KERKLDEAHNLLNSAHKRGFIVDEVT 488

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
              ++MG   E  +V+KAL ++ +M+ + +     +F+  I      G    A E  +++
Sbjct: 489 YGTLIMGFFRE-EKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDEL 547

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            E   +P  + +N +  G CK G ++ A     + + + +  P  +   + +  +C+ G 
Sbjct: 548 AESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKH-SFKPDNYTCNILLNGLCKEGM 606

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
            EK +   N + +E    + V  + +IS  CK   L+EA  + + + E+ L  E +   Y
Sbjct: 607 TEKALNFFNTLIEER-EVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGL--EPDRFTY 663

Query: 594 D---EILIEHMKKKTADLVLSGLKFFG 617
           +    +L+E  K    D +L   KF G
Sbjct: 664 NSFISLLMEDGKLSETDELLK--KFSG 688



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 163/378 (43%), Gaps = 46/378 (12%)

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCK---GGRVVRGHELFREMKENGILIDRAIYG 277
             L+++++M +  ++ +++   TL++GL +      +    E+F +M + G+ ++   + 
Sbjct: 149 VALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFN 208

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDS-GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
           VL+ G   EGK+  A  +L+ +V       D   YN+I+  + +  +     +L     +
Sbjct: 209 VLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKK 268

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
           + L P+  T N L+    ++G +   F+++  M++   +V  DL                
Sbjct: 269 NGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQT--NVLPDL---------------- 310

Query: 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
                             YNIL+  L   G +++ L L   M+ L L+ + ++++  I  
Sbjct: 311 ----------------CTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDG 354

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAA----YNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
             E G  LEA     K++E  +   V A    +N   K LCK  + +A    V++ +   
Sbjct: 355 CFELGLSLEA----RKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMH 410

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              P    Y   I    + G+    +E++ EM Q+G   N +  + I+  +CK   L+EA
Sbjct: 411 GFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEA 470

Query: 573 RKVFTNLRERKLLTEANT 590
             +  +  +R  + +  T
Sbjct: 471 HNLLNSAHKRGFIVDEVT 488



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 126/290 (43%), Gaps = 27/290 (9%)

Query: 145 QKGYKHNFASYNAL--AYCLSR-----NNLFRAADQVPELMDS------------QGRIA 185
           QKG K N  + N +  A C  R     +NL  +A +   ++D             + ++ 
Sbjct: 444 QKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVE 503

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + LE+ ++M++    P V  + ++I  L      +  +  ++E+ +  +  D   + ++I
Sbjct: 504 KALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSII 563

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
           +G CK GRV +  E + E  ++    D     +L+ GL  EG   KA +    L++    
Sbjct: 564 LGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEE-RE 622

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D   YN++I   C+ K+  +AY L     +  L PD  T N  +    E G++    +L
Sbjct: 623 VDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDEL 682

Query: 366 LAQME----KLKFSVAADLEKFFEFLVGKEERIMMAL---DVFEELKGKG 408
           L +       +K  +  + EK       KEE    A+   DV +EL  +G
Sbjct: 683 LKKFSGKFGSMKRDLQVETEKNPATSESKEELNTEAIAYSDVIDELCSRG 732


>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Vitis vinifera]
          Length = 835

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/447 (23%), Positives = 203/447 (45%), Gaps = 40/447 (8%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +P+V  YT +I      + L+  L +++EM    +  DV+ Y  ++ GLCK G+V     
Sbjct: 84  EPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKS 143

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           +FREM+E G++ +R  Y  LI+ L  EG V +A  L   +V  G   D+ +Y +++ GL 
Sbjct: 144 VFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLF 203

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-------L 372
           +    + A  +F+V +++ L P+  T + L+    ++G ++    LL +ME+       +
Sbjct: 204 KAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVI 263

Query: 373 KFSVAAD--------------LEKFFE-------FLVG-------KEERIMMALDVFEEL 404
            +S   D              + K  +       F+ G       K ++  +ALD+F+E+
Sbjct: 264 VYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEM 323

Query: 405 KGKGYSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
           K +G      + +  +  L   G +++A  LF  M    L  + ++++  +    ++G  
Sbjct: 324 KSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKE 383

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
            +A     ++ E S    V AYN L  GL K+G+ ++        +  +   P    +  
Sbjct: 384 SDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESF--HTGMRQLGLAPDSATFNT 441

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I   C+ G     +++LNEM   G  PN + C+ ++  +C  G +E+   +  ++    
Sbjct: 442 MINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMG 501

Query: 584 LLTEANTIVYDEILIEHMKKKTADLVL 610
                 T  +  +L    K + AD++L
Sbjct: 502 FHPTPTT--HKAVLDASSKSRRADVIL 526



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 175/425 (41%), Gaps = 44/425 (10%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + E ++++ KM +    P+VF Y  +I            L +++EMK   +E +   
Sbjct: 275 KGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFV 334

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             + +  L + GR+    ELF++M   G+L DR  Y  +++G    GK   A ++ +++ 
Sbjct: 335 IDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMT 394

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +     D+  YN +I GL ++ +++ +        Q  LAPD +T N ++    + G + 
Sbjct: 395 EKSSGFDVVAYNVLINGLFKLGKYE-SESFHTGMRQLGLAPDSATFNTMINAYCKEGNLG 453

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYNI 417
           N  KLL +M                                     K Y   P     NI
Sbjct: 454 NALKLLNEM-------------------------------------KSYGLKPNSITCNI 476

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L   GE++K + L   M  +       +    +    +S         H++++ M 
Sbjct: 477 LVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMG 536

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
               ++ YN L    C++G I  A ++ +D +G          Y   I   C S   +K 
Sbjct: 537 VKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADI-ITYNALIHGYCISSHLKKA 595

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             V ++M  EG  PN    + ++ G+     ++EA  +   ++ER L+  A T  YD ++
Sbjct: 596 FAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATT--YDILV 653

Query: 598 IEHMK 602
             H K
Sbjct: 654 SGHGK 658



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 157/362 (43%), Gaps = 20/362 (5%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +   V  +  LI G C+ G + R  EL   MK  G   D   Y  L+ G    G +  A 
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            L+ ++       ++  Y ++I   C+ +  + A  +++      L PD  T   ++   
Sbjct: 73  KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 354 AEMGRMDNFFKLLAQMEKL-----KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
            + G+++    +  +ME++     +FS A  ++  F+     E  ++    V   ++G G
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMV---VRGIG 189

Query: 409 YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           +  V +Y  LM  L + G    A  +F  +   +L  N +++S  I  H + GD+ +   
Sbjct: 190 FDVV-VYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGEL 248

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYAL 523
              ++ E    P+V  Y+ +  G  K G ++ AM     M+ R+ L NV      F Y  
Sbjct: 249 LLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNV------FVYGT 302

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I    ++ +    +++  EM   G   N  +  + ++ + + G +EEA ++F ++  R 
Sbjct: 303 LIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRG 362

Query: 584 LL 585
           LL
Sbjct: 363 LL 364



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 104/210 (49%), Gaps = 4/210 (1%)

Query: 394 IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           I  A+++ E +K +G +  +  YN LM    +IG++  A  L G++  +NLE N ++++ 
Sbjct: 33  ISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTT 92

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
            I  + +S  + +A   ++++   S VP V  Y C+  GLCK G+++ A  + R+ +  V
Sbjct: 93  LIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFRE-MEEV 151

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              P  F YA  I  + + G   +   +   M   G   + V+ +A++ G+ K G    A
Sbjct: 152 GVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNA 211

Query: 573 RKVFTNLRERKLLTEANTIVYDEILIEHMK 602
             +F  L E  L+   N + Y  ++  H K
Sbjct: 212 EDMFQVLLEESLV--PNCVTYSALIDGHCK 239



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 105/479 (21%), Positives = 189/479 (39%), Gaps = 62/479 (12%)

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIR-VLAAERNLD 220
           L  NN     D     +   GR+ E  E+ + M      PD   YT+M+     A +  D
Sbjct: 328 LEENNF--VIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESD 385

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGL-------------------------------- 248
           A   + +EM +     DV+AY  LI GL                                
Sbjct: 386 A-FNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMIN 444

Query: 249 --CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
             CK G +    +L  EMK  G+  +     +L++ L   G++ K  DLL D++  G+  
Sbjct: 445 AYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHP 504

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
               + +++    + ++ D    + +  V   +  D ST N L+     +G +     + 
Sbjct: 505 TPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVF 564

Query: 367 AQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
             M  +   + AD+  +   + G      +  A  V  ++  +G S +V  YNIL+G L 
Sbjct: 565 KDM--MGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLS 622

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
               +K+A  L  +M+   L  N+ ++ I +  H + G++ E  + + ++I    VP   
Sbjct: 623 AARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTR 682

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI---------------LHV 528
            YN L     K  ++  A  L+++ +      P    Y + I               L  
Sbjct: 683 TYNVLISCFAKGKKMSQAKELMQE-MQVRGIPPNSSTYDILICGWYKLSKQPELNKSLKR 741

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
               EA+++ E   EM ++G  P E   + I   + K G   +A+++   L ++K + E
Sbjct: 742 SYQAEAKRLFE---EMNEKGFIPCENTLACISFTLAKPGKKADAQRILNKLYKKKTVQE 797



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 127/305 (41%), Gaps = 22/305 (7%)

Query: 136 SKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMD-------------- 179
           S+ FH   +Q G   + A++N +  AYC    NL  A   + E+                
Sbjct: 420 SESFHTGMRQLGLAPDSATFNTMINAYC-KEGNLGNALKLLNEMKSYGLKPNSITCNILV 478

Query: 180 ----SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
               + G I + +++L  M      P    + A++   +  R  D  L + +++    V+
Sbjct: 479 QRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVK 538

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            D+  Y TLI   C+ G + R   +F++M   GIL D   Y  LI G      + KA  +
Sbjct: 539 LDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAV 598

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
              ++  G   ++  YN ++GGL   +   +A  L     +  L P+ +T + L+    +
Sbjct: 599 HSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGK 658

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPI 414
           +G M    KL  +M    F               K +++  A ++ +E++ +G   +   
Sbjct: 659 IGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSST 718

Query: 415 YNILM 419
           Y+IL+
Sbjct: 719 YDILI 723



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 111/276 (40%), Gaps = 36/276 (13%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGK--QKGYKHNFASYNALAYCLSRNNLFRAADQVP 175
           TP     VL   +    A    H   +    G K + ++YN L     R  + R A  V 
Sbjct: 505 TPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVF 564

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           + M  +G +A                D+  Y A+I       +L     V  +M  + V 
Sbjct: 565 KDMMGKGILA----------------DIITYNALIHGYCISSHLKKAFAVHSQMLTEGVS 608

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            +V  Y  L+ GL     +     L  +MKE G++ +   Y +L+    G GK+G   + 
Sbjct: 609 PNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVS---GHGKIGNMKEC 665

Query: 296 LK---DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
           +K   +++  G+      YN +I    + K+  +A +L +      + P+ ST + +L+C
Sbjct: 666 VKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYD-ILIC 724

Query: 353 CAEMGRMDNFFKLLAQME---KLKFSVAADLEKFFE 385
                    ++KL  Q E    LK S  A+ ++ FE
Sbjct: 725 --------GWYKLSKQPELNKSLKRSYQAEAKRLFE 752


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 180/408 (44%), Gaps = 9/408 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + +  +++++MR +  K   F +  +I    A  +++    +  EM+ + +   V+ 
Sbjct: 281 KGELEKAAQLVDRMRMSK-KASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVT 339

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I G+ + G V      F EM+  G+L D   Y  LI G    G + +A  L  DL 
Sbjct: 340 YNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLK 399

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE---MG 357
            +G    +  YN ++ G CR+   ++A +  +  V+    PD ST   L+    +   + 
Sbjct: 400 RAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLA 459

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YN 416
            +  FF  +          A +     E ++G       A  + E +  +G SS  + YN
Sbjct: 460 MVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSE---AFQLTEVMISRGISSDTVTYN 516

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           I +  L + G +K A  L+ KM    L+ + ++++  I  H E G + EA +  + ++  
Sbjct: 517 IFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVS 576

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              PS   Y       C+ G + +A    +  L      P E  Y + I  +CR G    
Sbjct: 577 GLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEE-GVRPNEVTYNVLIHALCRMGRTNL 635

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
             +  +EM + G  PN+   + +I G CK G  EEA ++++ + +  +
Sbjct: 636 AYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGI 683



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 179/419 (42%), Gaps = 18/419 (4%)

Query: 177 LMDS---QGRIAEMLEILEKM--RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK 231
           L+DS   +GR+ +  ++L +M  R   C P    Y  +I  LA +  L+   ++ + M+ 
Sbjct: 237 LLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRM 296

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
              +A    +  LI G    G V +   L  EM+  GI+     Y  +I G+   G V  
Sbjct: 297 S-KKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEA 355

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A     ++   G   DL  YNS+I G C+     +A  LF    +  LAP   T N LL 
Sbjct: 356 ARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLD 415

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY 409
               +G ++   +   + E ++     D+  +   + G  K   + M  + F+E+  KG 
Sbjct: 416 GYCRLGDLEEARRF--KQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGL 473

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
                 YN  + A L +G   +A  L   M    +  ++++++I +    +SG++ +A  
Sbjct: 474 QPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYV 533

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASG--PTEFKYALTI 525
              K++     P    Y CL    C+ G +  A    RD   G + SG  P+   Y + I
Sbjct: 534 LWMKMVSDGLQPDCITYTCLIHAHCERGRLREA----RDIFDGMLVSGLPPSAVTYTVFI 589

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
              CR G          +M +EG  PNEV  + +I  +C+ G    A + F  + ER L
Sbjct: 590 HAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGL 648



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 163/365 (44%), Gaps = 6/365 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P V  Y  +I  +    N++A    + EM+   +  D++ Y +LI G CK G +     L
Sbjct: 335 PTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWL 394

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F ++K  G+      Y +L++G    G + +A    +++V+ G + D+  Y  ++ G  +
Sbjct: 395 FGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRK 454

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           V+      + F+  +   L PD    N  +     +G     F+L   M  +   +++D 
Sbjct: 455 VRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVM--ISRGISSDT 512

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGK 437
             +  FL G  K   +  A  ++ ++   G     I Y  L+ A  E G +++A  +F  
Sbjct: 513 VTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDG 572

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M    L  +++++++ I  +   G++  A     K++E    P+   YN L   LC++G 
Sbjct: 573 MLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGR 632

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
            + A     + L    S P ++ Y L I   C+ G  E+ I + +EM Q G  P+    +
Sbjct: 633 TNLAYQHFHEMLERGLS-PNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHN 691

Query: 558 AIISG 562
           A+  G
Sbjct: 692 ALFKG 696



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 125/312 (40%), Gaps = 1/312 (0%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E L +   ++R    P V  Y  ++       +L+   R  +EM +   + DV  Y
Sbjct: 386 GNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTY 445

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ G  K   +    E F EM   G+  D   Y   I   +  G   +A  L + ++ 
Sbjct: 446 TILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMIS 505

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G  +D   YN  + GLC+      AY L+   V D L PD  T   L+    E GR+  
Sbjct: 506 RGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLRE 565

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
              +   M       +A     F     +   +  A   F+++  +G     + YN+L+ 
Sbjct: 566 ARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIH 625

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           AL  +G    A   F +M    L  N  ++++ I  + + G+  EA   ++++ +    P
Sbjct: 626 ALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHP 685

Query: 481 SVAAYNCLTKGL 492
               +N L KG 
Sbjct: 686 DHCTHNALFKGF 697



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 121/268 (45%), Gaps = 15/268 (5%)

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF-----SVAADLEKFFE 385
           F       + P     N +L    +  R D+   + A+M +L       +    L+ FF 
Sbjct: 184 FREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFF- 242

Query: 386 FLVGKEERIMMALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLN 442
               +E R+  A  +  E++ +    +P    YN+++  L   GE++KA  L  +MR ++
Sbjct: 243 ----REGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMR-MS 297

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
            + ++ +F+  I  +   G + +A     ++     VP+V  YN +  G+ + G ++AA 
Sbjct: 298 KKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAAR 357

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
           M   + +  +   P    Y   I   C++G  ++ + +  ++ + G  P+ +  + ++ G
Sbjct: 358 MKFVE-MRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDG 416

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANT 590
            C+ G LEEAR+    + E+    + +T
Sbjct: 417 YCRLGDLEEARRFKQEMVEQGCQPDVST 444



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 64/138 (46%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E  +I + M  +   P    YT  I       NL +    +++M ++ V  + + 
Sbjct: 560 RGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVT 619

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI  LC+ GR    ++ F EM E G+  ++  Y +LI+G   EG   +A  L  ++ 
Sbjct: 620 YNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMH 679

Query: 301 DSGYRADLGIYNSIIGGL 318
             G   D   +N++  G 
Sbjct: 680 QHGIHPDHCTHNALFKGF 697


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/432 (25%), Positives = 191/432 (44%), Gaps = 24/432 (5%)

Query: 178 MDSQGRIAEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           M  +G     L +L KM   +   P+V  Y+A+I  L  +        ++ EM++  +  
Sbjct: 229 MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFP 288

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D+  Y ++I+G C  GR     +L +EM E  I  D   Y  LI   V EGK  +A +L 
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELY 348

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            +++  G   +   Y+S+I G C+  + D A  +F +      +P+  T N L+      
Sbjct: 349 DEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA 408

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFE-----FLVGKEERIMMALDVFEELKGKGYS- 410
            R+D+  +LL +M +    + AD   +       +LVG    +  ALD+ +E+   G   
Sbjct: 409 KRIDDGMELLHEMTET--GLVADTTTYNTLIHGFYLVGD---LNAALDLLQEMISSGLCP 463

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGL-----------NLEVNSLSFSIAIQCHVE 459
            +   + L+  L + G++K AL +F  M+              +E +  +++I I   + 
Sbjct: 464 DIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLIN 523

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
            G  LEA E + ++     VP    Y+ +  GLCK   +D A  +  D +G+ +  P   
Sbjct: 524 EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF-DSMGSKSFSPNVV 582

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            +   I   C++G  +  +E+  EM + G   N +    +I G  K G +  A  +F  +
Sbjct: 583 TFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642

Query: 580 RERKLLTEANTI 591
               +  +  TI
Sbjct: 643 ISSGVYPDTITI 654



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/450 (22%), Positives = 204/450 (45%), Gaps = 21/450 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + R++E L+   +M    C+P+V  +T ++  L  E  +   + + + M +D ++   + 
Sbjct: 162 EDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y T++ G+CK G  V    L R+M+E + I+ +  IY  +I+ L  +G+   A +L  ++
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            + G   DL  YNS+I G C   ++  A +L +  ++  ++PD  T N L+    + G+ 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
               +L  +M  L   +  +   +   + G  K+ R+  A  +F  +  KG S ++  +N
Sbjct: 342 FEAEELYDEM--LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFN 399

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+        +   + L  +M    L  ++ +++  I      GD+  A +   ++I  
Sbjct: 400 TLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISS 459

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV----ASGPTEF------KYALTIL 526
              P +   + L  GLC  G++  A+ + +    +     AS P          Y + I 
Sbjct: 460 GLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILIS 519

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
            +   G+  +  E+  EM   G  P+ +  S++I G+CK   L+EA ++F ++  +    
Sbjct: 520 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSF-- 577

Query: 587 EANTIVYDEILIEHMKKKTADLVLSGLKFF 616
             N + +  ++  + K    D    GL+ F
Sbjct: 578 SPNVVTFTTLINGYCKAGRVD---DGLELF 604



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 184/406 (45%), Gaps = 17/406 (4%)

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
           ++ + +KM R   + D++++  +I+   +   L   L  + ++ K  +  DV+ + TL+ 
Sbjct: 98  VISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLH 157

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC   RV    + F +M E     +   +  L+ GL  EG++ +A  LL  +++ G + 
Sbjct: 158 GLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQP 217

Query: 307 DLGIYNSIIGGLCR----VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
               Y +I+ G+C+    V   +   K+ EV+    + P+    + ++    + GR  + 
Sbjct: 218 TQITYGTIVDGMCKKGDTVSALNLLRKMEEVS---HIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILM 419
             L  +M++    +  DL  +   +VG     R   A  + +E+  +  S  V  YN L+
Sbjct: 275 QNLFTEMQEK--GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALI 332

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            A ++ G+  +A  L+ +M    +  N++++S  I    +   +  A      +      
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDC--LGNVASGPTEFKYALTILHVCRSGEAEKI 537
           P++  +N L  G C    ID  M L+ +    G VA   T   Y   I      G+    
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTT---YNTLIHGFYLVGDLNAA 449

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
           +++L EM   G  P+ V C  ++ G+C +G L++A ++F  +++ K
Sbjct: 450 LDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G+  E  E+ E+M      PD   Y++MI  L  +  LD   ++++ M       +V+
Sbjct: 523 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVV 582

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            + TLI G CK GRV  G ELF EM   GI+ +   Y  LI G    G +  A D+ +++
Sbjct: 583 TFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
           + SG   D     +++ GL   ++  +A  + E
Sbjct: 643 ISSGVYPDTITIRNMLTGLWSKEELKRAVAMLE 675



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 13/207 (6%)

Query: 397 ALDVFEE-LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A+D+F + L+ +   SV  +  LMG ++ +      + L+ KM    +  +  SF+I I+
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIK 122

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLG 510
           C      +  A     KI ++   P V  +  L  GLC    +  A+     M    C  
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRP 182

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
           NV +      +   +  +CR G   + + +L+ M ++G  P ++    I+ GMCK G   
Sbjct: 183 NVVT------FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 571 EARKVFTNLRERKLLTEANTIVYDEIL 597
            A  +   + E   +   N ++Y  I+
Sbjct: 237 SALNLLRKMEEVSHII-PNVVIYSAII 262



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 89/199 (44%), Gaps = 11/199 (5%)

Query: 186 EMLEILEKMRRNL--------CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           EM ++++K +++L         +PDV  Y  +I  L  E        ++EEM    +  D
Sbjct: 486 EMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 545

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
            + Y ++I GLCK  R+    ++F  M       +   +  LI G    G+V    +L  
Sbjct: 546 TITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFC 605

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           ++   G  A+   Y ++I G  +V   + A  +F+  +   + PD  T+  +L     + 
Sbjct: 606 EMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML---TGLW 662

Query: 358 RMDNFFKLLAQMEKLKFSV 376
             +   + +A +EKL+ S+
Sbjct: 663 SKEELKRAVAMLEKLQMSM 681



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 59/119 (49%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q R+ E  ++ + M      P+V  +T +I        +D  L ++ EM +  + A+ + 
Sbjct: 559 QSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAIT 618

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y+TLI G  K G +    ++F+EM  +G+  D      ++ GL  + ++ +A  +L+ L
Sbjct: 619 YITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 129/554 (23%), Positives = 229/554 (41%), Gaps = 78/554 (14%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           R + P  VA V++ +N+P  A K F+    + G+KH   +Y  +   L  +  F A + V
Sbjct: 3   RALQPKHVAAVIRYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDV 62

Query: 175 PELM----DSQ----------------GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
              M    DS+                G++ E + + E+M    C+P V +Y A++ +L 
Sbjct: 63  LAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILV 122

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR--------------------- 253
                    +V+  MK   +  DV  +   +   C  GR                     
Sbjct: 123 EYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAV 182

Query: 254 ----VVRG----------HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
               V+ G          + LF EM + GI  D   +  LI  L  +G V ++  L   +
Sbjct: 183 SYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKV 242

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G   +L  +N  I GLCR    D+A +L E  V + L PD  + N L+    +  ++
Sbjct: 243 MKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKL 302

Query: 360 DNFFKLLAQM-----EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP- 413
                 L +M     E  +F+    +  F      K   +  A  +  +   KG+  +P 
Sbjct: 303 VEAECYLHKMVNSGVEPNEFTYNTIINGF-----CKAGMMQNADKILRDAMFKGF--IPD 355

Query: 414 --IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
              Y+ L+  L   G++ +A+ +F +      + + + ++  ++   + G +L+A +   
Sbjct: 356 EFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMK 415

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVC 529
            ++E    P +  YN +  GLCK+G +  A  ++ D    +A G  P  F +   I   C
Sbjct: 416 DMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDA---IAKGCIPDIFTFNTLIDGYC 472

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           +    +K IE+L+ M   G  P+ +  + +++G+CK   L+     F  + E+      N
Sbjct: 473 KQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKG--CTPN 530

Query: 590 TIVYDEILIEHMKK 603
            I Y+ ILIE   K
Sbjct: 531 IITYN-ILIESFCK 543



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 187/413 (45%), Gaps = 6/413 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR    L +L  M    C+ +  +Y A+I     E        +++EM K  +  D++ +
Sbjct: 160 GRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTF 219

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI  LCK G V    +LF ++ + G+  +   + + I+GL  +G + +A  LL+ +V 
Sbjct: 220 NKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVS 279

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  YN++I G C+  +  +A       V   + P+  T N ++    + G M N
Sbjct: 280 EGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQN 339

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
             K+L       F    D   +   + G   +  +  A+ VF E   KG+  S+ +YN L
Sbjct: 340 ADKILRDAMFKGF--IPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTL 397

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L + G V +AL L   M       +  ++++ +    + G + +A    N  I    
Sbjct: 398 VKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGC 457

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           +P +  +N L  G CK   +D A+ ++   L +  + P    Y   +  +C++ + + ++
Sbjct: 458 IPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGIT-PDVITYNTLLNGLCKARKLDNVV 516

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           +    M ++GC PN +  + +I   CK   + EA ++F  ++ R L  +  T+
Sbjct: 517 DTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTL 569



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 172/365 (47%), Gaps = 21/365 (5%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD F Y+++I  L  + +++  + V+ E  +   +  ++ Y TL+ GL K G V++  +L
Sbjct: 354 PDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQL 413

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
            ++M E+G   D   Y +++ GL   G +  A  +L D +  G   D+  +N++I G C+
Sbjct: 414 MKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCK 473

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL-AQMEK------LK 373
            +  DKA ++ +  +   + PD  T N LL    +  ++DN      A +EK      + 
Sbjct: 474 QRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIIT 533

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
           +++   +E F      K+ ++  A+++F+E+K +G +  +     L+  L   GE+ KA 
Sbjct: 534 YNIL--IESF-----CKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAY 586

Query: 433 YLFGKM-RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
            LF  + +      ++  F+I I    E  ++  A +  +K+      P    Y  +   
Sbjct: 587 ELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDS 646

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPT-EFKYALTILH-VCRSGEAEKIIEVLNEMTQEGC 549
            CK G ID A   +   L N++ G    F     +L+ +C +    + + ++N M Q G 
Sbjct: 647 YCKTGNIDLAHTFL---LENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGI 703

Query: 550 PPNEV 554
            P EV
Sbjct: 704 VPEEV 708



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/427 (20%), Positives = 183/427 (42%), Gaps = 49/427 (11%)

Query: 172 DQVPELMDSQGRIAEMLEILEK-MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK 230
           +++  ++  +G + E  ++  K M+R +C P++F +   I+ L  +  +D   R+ E + 
Sbjct: 220 NKLIHVLCKKGNVQESEKLFSKVMKRGVC-PNLFTFNIFIQGLCRKGAIDEAARLLESIV 278

Query: 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
            + +  DV++Y TLI G CK  ++V       +M  +G+  +   Y  +I G    G + 
Sbjct: 279 SEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQ 338

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            A  +L+D +  G+  D   Y+S+I GLC     ++A  +F   ++          N L+
Sbjct: 339 NADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLV 398

Query: 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS 410
              ++ G                                    ++ AL + +++   G S
Sbjct: 399 KGLSKQG-----------------------------------LVLQALQLMKDMMEHGCS 423

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
             +  YN+++  L ++G +  A  +           +  +F+  I  + +  ++ +A E 
Sbjct: 424 PDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEI 483

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALT 524
            + ++     P V  YN L  GLCK  ++D  +     ML + C  N+ +      Y + 
Sbjct: 484 LDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIIT------YNIL 537

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           I   C+  +  + +E+  EM   G  P+ V    +I G+C +G L++A ++F  + +   
Sbjct: 538 IESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYK 597

Query: 585 LTEANTI 591
            + +  I
Sbjct: 598 FSYSTAI 604



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/401 (21%), Positives = 169/401 (42%), Gaps = 15/401 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I E   +LE +      PDV +Y  +I        L        +M    VE +   
Sbjct: 264 KGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFT 323

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I G CK G +    ++ R+    G + D   Y  LI GL  +G + +A  +  + +
Sbjct: 324 YNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAM 383

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G++  + +YN+++ GL +     +A +L +  ++   +PD  T N ++    +MG + 
Sbjct: 384 EKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLS 443

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
           +   +L   + +      D+  F   + G  K+  +  A+++ + +   G +  V  YN 
Sbjct: 444 DANGILN--DAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNT 501

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L +  ++   +  F  M       N ++++I I+   +   + EA E   ++    
Sbjct: 502 LLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRG 561

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P +     L  GLC  GE+D A  L             +F Y+  I ++  +   EK+
Sbjct: 562 LTPDIVTLCTLICGLCSNGELDKAYELFV-----TIEKEYKFSYSTAIFNIMINAFCEKL 616

Query: 538 I-----EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
                 ++ ++M    C P+      +I   CK G ++ A 
Sbjct: 617 NVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAH 657



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 122/270 (45%), Gaps = 36/270 (13%)

Query: 141 WAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV-PELMD------------------SQ 181
           +   +KG+KH+   YN L   LS+  L   A Q+  ++M+                    
Sbjct: 380 YEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKM 439

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +++   IL       C PD+F +  +I     +RN+D  + + + M    +  DV+ Y
Sbjct: 440 GCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITY 499

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+ GLCK  ++    + F+ M E G   +   Y +LIE    + KV +A +L K++  
Sbjct: 500 NTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKT 559

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+    ++I GLC   + DKAY+LF VT++ +    +ST        A    M N
Sbjct: 560 RGLTPDIVTLCTLICGLCSNGELDKAYELF-VTIEKEYKFSYST--------AIFNIMIN 610

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKE 391
            F      EKL  S+A   EK F  + G +
Sbjct: 611 AF-----CEKLNVSMA---EKLFHKMGGSD 632


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/466 (23%), Positives = 203/466 (43%), Gaps = 54/466 (11%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           KG K NF ++N L     R+N    A+QV   + S G    M              DV +
Sbjct: 389 KGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNM--------------DVCS 434

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL-FREM 264
           Y  +I  L       + L++  ++    +         L++GLCK        EL F+  
Sbjct: 435 Y--VIHRLMERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLA 492

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              G+  +      L+ GL   G + +  ++LK +++ G   D   YN++I G C+  + 
Sbjct: 493 AVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKI 552

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           ++A+KL E  VQ +  PD  T N L+   A+MG++D+  +LL + ++  F          
Sbjct: 553 EEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGF---------- 602

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                                     +V  Y +L+    +   ++ A+  F  +    +E
Sbjct: 603 ------------------------VPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVE 638

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
           ++S+ ++I I  +   G++ EA +  + +     +P+ A Y+ L  G+C IG +D A  +
Sbjct: 639 LSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEI 698

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
             + + N    P  F Y   I   C+ G+ + +  +L EM+  G  PN++  + +I G C
Sbjct: 699 FEE-MRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYC 757

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVL 610
           K G ++EAR++   +    +    +T+ Y+ +   + K++   + L
Sbjct: 758 KLGNMKEARELLNEMIRNGI--APDTVTYNALQKGYCKERELTVTL 801



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 103/468 (22%), Positives = 196/468 (41%), Gaps = 38/468 (8%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + +++  KM      P+V  Y  +I  L      +  LR  + M +  V   V+ Y
Sbjct: 269 GRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTY 328

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GL K       +E+  EM   G   +  ++  LI+G   +G +G+A  +  ++  
Sbjct: 329 GVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAM 388

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + +   +N+++ G CR  Q ++A ++    +   L+ +    + ++    E     +
Sbjct: 389 KGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFVS 448

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKG-KGYSSVPIY-NILM 419
             K++ ++      V+  L       + K E    A++++ +L   KG ++  +  N L+
Sbjct: 449 ALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALL 508

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L E G +++   +  +M    L ++ +S++  I    + G I EA +   ++++    
Sbjct: 509 HGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQ 568

Query: 480 PSVAAYNCLTKGLCKIGEID--------------------AAMMLVRDCLGNVASGPTEF 519
           P    YN L KGL  +G+ID                     A++L   C  +      +F
Sbjct: 569 PDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKF 628

Query: 520 --------------KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
                          Y + I   CR G   +  ++ + M   G  P     S++I GMC 
Sbjct: 629 FKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCC 688

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
            G ++EA+++F  +R   LL   N   Y  ++  H K    D+V S L
Sbjct: 689 IGRVDEAKEIFEEMRNEGLL--PNVFCYTALIGGHCKLGQMDIVGSIL 734



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 104/456 (22%), Positives = 191/456 (41%), Gaps = 67/456 (14%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA-------------------DVM 239
           C  D+F       V+ ++R +  CL+    +   LV+A                   DV 
Sbjct: 204 CAFDIF-------VMFSKRGVFPCLKTCNLLLSSLVKANELHKSYEVFDLACQGVAPDVF 256

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGI-------------------------LIDRA 274
            + T I   CKGGRV    +LF +M+  G+                           DR 
Sbjct: 257 TFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRM 316

Query: 275 I----------YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           +          YGVLI GL+      +A ++L ++   G+  +  ++N++I G CR    
Sbjct: 317 VRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDM 376

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +A ++ +      + P+F T N LL       +M+   ++L  +     SV  D+  + 
Sbjct: 377 GEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYV 436

Query: 385 EFLVGKEERIMMALDVFEE-LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL-N 442
              + +    + AL +  + L G    S  +   L+  L +     +A+ L+ K+  +  
Sbjct: 437 IHRLMERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKG 496

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           L  N+++ +  +    E G++ E  E   +++E   +    +YN L  G CK G+I+ A 
Sbjct: 497 LAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAF 556

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            L  + +      P  + Y   +  +   G+ + +  +L+E  + G  PN    + ++ G
Sbjct: 557 KLKEEMVQQ-EFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEG 615

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
            CK   +E+A K F NL   K+  E +++VY+ ILI
Sbjct: 616 YCKADRIEDAVKFFKNLDYEKV--ELSSVVYN-ILI 648



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 119/272 (43%), Gaps = 21/272 (7%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCL-SRNNL---FRAAD 172
           +TP LV  + K E +      +F  A   KG   N  + NAL + L  R N+   F    
Sbjct: 468 LTP-LVVGLCKCEGHSEAIELWFKLAA-VKGLAANTVTSNALLHGLCERGNMEEVFEVLK 525

Query: 173 QVPE---LMD------------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER 217
           Q+ E   L+D              G+I E  ++ E+M +   +PD + Y  +++ LA   
Sbjct: 526 QMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMG 585

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
            +D   R+  E K+     +V  Y  L+ G CK  R+    + F+ +    + +   +Y 
Sbjct: 586 KIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYN 645

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           +LI      G V +A  L   +   G       Y+S+I G+C + + D+A ++FE    +
Sbjct: 646 ILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNE 705

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            L P+      L+    ++G+MD    +L +M
Sbjct: 706 GLLPNVFCYTALIGGHCKLGQMDIVGSILLEM 737



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E  ++ + M+     P    Y+++I  +     +D    ++EEM+ + +  +V  Y
Sbjct: 655 GNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCY 714

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G CK G++     +  EM  NGI  ++  Y ++I+G    G + +A +LL +++ 
Sbjct: 715 TALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIR 774

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           +G   D   YN++  G C+ ++         VT+Q D
Sbjct: 775 NGIAPDTVTYNALQKGYCKERELT-------VTLQSD 804


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 194/422 (45%), Gaps = 37/422 (8%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
             + +E + ++++M +  C+P++  Y  ++  L    ++D    +  +M+   +EADV+ 
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + T+I  LCK   V     LF+EM+  GI  +   Y  LI  L   G+   A  LL D++
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +     +L  +N++I    +  +F +A KL +  ++  + PD  T N L+          
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLI---------- 297

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
           N F +  +++K K        + FEF+V K        D F +L          YN L+ 
Sbjct: 298 NGFCMHDRLDKAK--------QMFEFMVSK--------DCFPDL--------DTYNTLIK 333

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              +   V+    LF +M    L  ++++++  IQ     GD   A +   +++     P
Sbjct: 334 GFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPP 393

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            +  Y+ L  GLC  G+++ A+  V D +         + Y   I  +C++G+ +   ++
Sbjct: 394 DIMTYSILLDGLCNNGKLEKALE-VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 452

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
              ++ +G  PN V  + +ISG+C    L+EA  +   ++E   L ++ T  Y+ ++  H
Sbjct: 453 FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGT--YNTLIRAH 510

Query: 601 MK 602
           ++
Sbjct: 511 LR 512



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 170/387 (43%), Gaps = 16/387 (4%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P +F +  ++  +A  +  D  + + E+M++  +  ++  Y  LI   C+  ++     L
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             +M + G          L+ G     ++  A  L+  +V+ GYR D   + ++I GL  
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             +  +A  L +  VQ    P+  T   ++    + G +D  F LL +ME  K  + AD+
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK--IEADV 185

Query: 381 EKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             F   +  + K   +  AL++F+E++ KG   +V  Y+ L+  L   G    A  L   
Sbjct: 186 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 245

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M    +  N ++F+  I   V+ G  +EA + H+ +I+ S  P +  YN L  G C    
Sbjct: 246 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDR 305

Query: 498 IDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           +D A      M+ +DC       P    Y   I   C+S   E   E+  EM+  G   +
Sbjct: 306 LDKAKQMFEFMVSKDCF------PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 359

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNL 579
            V  + +I G+   G  + A+KVF  +
Sbjct: 360 TVTYTTLIQGLFHDGDCDNAQKVFKQM 386



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 164/367 (44%), Gaps = 6/367 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I     +L KM     + DV  +  +I  L   R++D  L +++EM+   +  +V+ 
Sbjct: 163 RGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVT 222

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI  LC  GR     +L  +M E  I  +   +  LI+  V EGK  +A  L  D++
Sbjct: 223 YSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMI 282

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 D+  YNS+I G C   + DKA ++FE  V  D  PD  T N L+    +  R++
Sbjct: 283 KRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVE 342

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNI 417
           +  +L  +M      +  D   +   + G   +     A  VF+++   G    +  Y+I
Sbjct: 343 DGTELFREMSHR--GLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 400

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L   G+++KAL +F  M+   ++++   ++  I+   ++G + +  +    +    
Sbjct: 401 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 460

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P+V  YN +  GLC    +  A  L++  +      P    Y   I    R G+    
Sbjct: 461 VKPNVVTYNTMISGLCSKRLLQEAYALLKK-MKEDGPLPDSGTYNTLIRAHLRDGDKAAS 519

Query: 538 IEVLNEM 544
            E++ EM
Sbjct: 520 AELIREM 526



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 140/339 (41%), Gaps = 55/339 (16%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------PELMD---------SQGRI 184
           + KG + N  +Y++L  CL     +  A Q+          P L+           +G+ 
Sbjct: 212 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKF 271

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  ++ + M +    PD+F Y ++I        LD   +++E M       D+  Y TL
Sbjct: 272 VEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 331

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK  RV  G ELFREM   G++ D   Y  LI+GL  +G    A  + K +V  G 
Sbjct: 332 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  Y+ ++ GLC   + +KA ++F+   + ++  D      ++    + G++D+   
Sbjct: 392 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDD--- 448

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
                                             D+F  L  KG   +V  YN ++  L 
Sbjct: 449 --------------------------------GWDLFCSLSLKGVKPNVVTYNTMISGLC 476

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
               +++A  L  KM+      +S +++  I+ H+  GD
Sbjct: 477 SKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 515



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 95/192 (49%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ +  E+  +M       D   YT +I+ L  + + D   +V+++M  D V  D+M Y 
Sbjct: 340 RVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYS 399

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            L+ GLC  G++ +  E+F  M+++ I +D  IY  +IEG+   GKV    DL   L   
Sbjct: 400 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 459

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + ++  YN++I GLC  +   +AY L +   +D   PD  T N L+      G     
Sbjct: 460 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAAS 519

Query: 363 FKLLAQMEKLKF 374
            +L+ +M   +F
Sbjct: 520 AELIREMRSCRF 531



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 98/211 (46%), Gaps = 3/211 (1%)

Query: 404 LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
           +K +   S+  +N L+ A+ ++ +    + L  KM+ L +  N  +++I I C      I
Sbjct: 2   VKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQI 61

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
             A     K++++   PS+   + L  G C    I  A+ LV D +  +   P    +  
Sbjct: 62  SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALV-DQMVEMGYRPDTITFTT 120

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I  +    +A + + +++ M Q GC PN V    +++G+CK G ++ A  +   +   K
Sbjct: 121 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 180

Query: 584 LLTEANTIVYDEILIEHMKKKTADLVLSGLK 614
           +  EA+ ++++ I+    K +  D  L+  K
Sbjct: 181 I--EADVVIFNTIIDSLCKYRHVDDALNLFK 209



 Score = 42.0 bits (97), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           E M   G++ +  ++   +     KP+V  Y  MI  L ++R L     + ++MK+D   
Sbjct: 438 EGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL 497

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            D   Y TLI    + G      EL REM+    + D +  G L+  ++ +G++ K+
Sbjct: 498 PDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG-LVANMLHDGRLDKS 553


>gi|357494871|ref|XP_003617724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519059|gb|AET00683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 861

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 117/536 (21%), Positives = 232/536 (43%), Gaps = 40/536 (7%)

Query: 63  YLPNQKTQSPP-SDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDL 121
           Y  N  T++    DPK     + L+ I         +++ +W   ++++        P  
Sbjct: 12  YFRNLTTETTTKQDPKDQNFTQTLNEIC-----TITRSKPRWENTLISQYPSFNFSNPKF 66

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA-------DQV 174
               LK +NN  L+ +F HW     G+K + +S NAL   L      +AA       D V
Sbjct: 67  FLSYLKHQNNTFLSLRFLHWLTSHCGFKPDQSSCNALFDALVDAGAVKAAKSLLEYPDFV 126

Query: 175 PE---------LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV 225
           P+         L+   G + E+ ++   +++    P   ++   +         D   ++
Sbjct: 127 PKNDSLEGYVRLLGENGMVEEVFDVFVSLKKVGFLPSASSFNVCLLACLKVGRTDLVWKL 186

Query: 226 WEEMKKDLV--EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
           +E M +  V    DV     LI   C   +V  G+EL R++ E G+ +D  ++  LI G 
Sbjct: 187 YELMIESGVGVNIDVETVGCLIKAFCAENKVFNGYELLRQVLEKGLCVDNTVFNALINGF 246

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
             + +  +  ++L  ++       +  Y  II GL + ++ D+A+++F         PD 
Sbjct: 247 CKQKQYDRVSEILHIMIAMKCNPSIYTYQEIINGLLKRRKNDEAFRVFNDLKDRGYFPDR 306

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKF-----SVAADLEKFFEFLVG--KEERIMM 396
                ++    +MG       LLA+  KL F      +  +   +   + G  K      
Sbjct: 307 VMYTTVIKGFCDMG-------LLAEARKLWFEMIQKGLVPNEYTYNVMIYGYCKVRDFAE 359

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A  +++++ G+GY+ +V  Y+ ++  L   G+  +AL LF +M    +  + +S++  I+
Sbjct: 360 ARKLYDDMCGRGYAENVVSYSTMISGLYLHGKTDEALSLFHEMSRKGIARDLISYNSLIK 419

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
              + G++ +A    NK++     PSV+++  L K LCK+G+ + AM L++D + +    
Sbjct: 420 GLCQEGELAKATNLLNKLLIQGLEPSVSSFTPLIKCLCKVGDTEGAMRLLKD-MHDRHLE 478

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
           P    +   I+ + + G+  + +E L +M      PN      +I  + +   L++
Sbjct: 479 PIASTHDYMIIGLSKKGDFAQGMEWLLKMLSWKLKPNMQTFEHLIDCLKRENRLDD 534



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 134/323 (41%), Gaps = 37/323 (11%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R++E+L I+  M+   C P ++ Y  +I  L   R  D   RV+ ++K      D + Y 
Sbjct: 254 RVSEILHIMIAMK---CNPSIYTYQEIINGLLKRRKNDEAFRVFNDLKDRGYFPDRVMYT 310

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           T+I G C  G +    +L+ EM + G++ +   Y V+I G        +A  L  D+   
Sbjct: 311 TVIKGFCDMGLLAEARKLWFEMIQKGLVPNEYTYNVMIYGYCKVRDFAEARKLYDDMCGR 370

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           GY  ++  Y+++I GL    + D+A  LF    +  +A D  + N L+    + G +   
Sbjct: 371 GYAENVVSYSTMISGLYLHGKTDEALSLFHEMSRKGIARDLISYNSLIKGLCQEGELAKA 430

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422
             LL ++                        ++  L+           SV  +  L+  L
Sbjct: 431 TNLLNKL------------------------LIQGLE----------PSVSSFTPLIKCL 456

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            ++G+ + A+ L   M   +LE  + +    I    + GD  +  E   K++     P++
Sbjct: 457 CKVGDTEGAMRLLKDMHDRHLEPIASTHDYMIIGLSKKGDFAQGMEWLLKMLSWKLKPNM 516

Query: 483 AAYNCLTKGLCKIGEIDAAMMLV 505
             +  L   L +   +D  ++++
Sbjct: 517 QTFEHLIDCLKRENRLDDILIVL 539



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 108/230 (46%), Gaps = 4/230 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +AE  ++  +M +    P+ + Y  MI      R+     +++++M       +V++Y
Sbjct: 320 GLLAEARKLWFEMIQKGLVPNEYTYNVMIYGYCKVRDFAEARKLYDDMCGRGYAENVVSY 379

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T+I GL   G+      LF EM   GI  D   Y  LI+GL  EG++ KA +LL  L+ 
Sbjct: 380 STMISGLYLHGKTDEALSLFHEMSRKGIARDLISYNSLIKGLCQEGELAKATNLLNKLLI 439

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G    +  +  +I  LC+V   + A +L +      L P  ST + +++  ++ G    
Sbjct: 440 QGLEPSVSSFTPLIKCLCKVGDTEGAMRLLKDMHDRHLEPIASTHDYMIIGLSKKGDFAQ 499

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGY 409
             + L +M  L + +  +++ F   +  + +E R+   L V + +  +GY
Sbjct: 500 GMEWLLKM--LSWKLKPNMQTFEHLIDCLKRENRLDDILIVLDLMFREGY 547



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 113/272 (41%), Gaps = 14/272 (5%)

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG 389
           L  +T      PD S+ N L     + G +     LL   E   F    D  + +  L+G
Sbjct: 84  LHWLTSHCGFKPDQSSCNALFDALVDAGAVKAAKSLL---EYPDFVPKNDSLEGYVRLLG 140

Query: 390 KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKM----RGLNLE 444
           +   +    DVF  LK  G+  S   +N+ + A L++G       L+  M     G+N++
Sbjct: 141 ENGMVEEVFDVFVSLKKVGFLPSASSFNVCLLACLKVGRTDLVWKLYELMIESGVGVNID 200

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
           V ++   I   C      +    E   +++E         +N L  G CK  + D    +
Sbjct: 201 VETVGCLIKAFC--AENKVFNGYELLRQVLEKGLCVDNTVFNALINGFCKQKQYDRVSEI 258

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
           +   +  +   P+ + Y   I  + +  + ++   V N++   G  P+ V+ + +I G C
Sbjct: 259 LHIMIA-MKCNPSIYTYQEIINGLLKRRKNDEAFRVFNDLKDRGYFPDRVMYTTVIKGFC 317

Query: 565 KHGTLEEARKVFTNLRERKLLTEA---NTIVY 593
             G L EARK++  + ++ L+      N ++Y
Sbjct: 318 DMGLLAEARKLWFEMIQKGLVPNEYTYNVMIY 349


>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
          Length = 845

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/490 (24%), Positives = 205/490 (41%), Gaps = 46/490 (9%)

Query: 165 NNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCK----PDVFAYTAMIRVLAAERNLD 220
           N +  A  + P         A  +E+ ++M R  C     P +  Y  +I         D
Sbjct: 134 NGILAALARAPPSAACGDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPD 193

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280
             L +   + K+ +  D  +Y +LI G  K G V + H LF EM E G+L    I   +I
Sbjct: 194 LGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSII 252

Query: 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
           + L    ++ KA  +++ +VDSG   DL  Y+ II GLC+ K  DKA ++ E  V+    
Sbjct: 253 KELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTR 312

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400
           P+  T N L+   +  G  +   ++  QM         D    F   + K  R   A  +
Sbjct: 313 PNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCI 372

Query: 401 FEELKGKG------------------YSSV---------------------PIYNILMGA 421
           F+ +  KG                  Y +V                      ++NIL+ A
Sbjct: 373 FDSMVLKGPKPDIISYSTNASWVCYWYVTVVWVMWHNIFNLMLTKGIAPNKHVFNILINA 432

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
               G + KA+ +F  M+   +  ++++F+  I      G + +A    N ++++   PS
Sbjct: 433 YARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPS 492

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
            A Y CL +G C  GE+  A  L+ + +      P    ++  I ++C+ G   +  +++
Sbjct: 493 EAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIM 552

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
           + M Q G  PN V  ++++ G C  G +EEA  +   +    +  E N  +Y  ++  + 
Sbjct: 553 DMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGI--EPNCYIYGTLVDGYC 610

Query: 602 KKKTADLVLS 611
           K    D  L+
Sbjct: 611 KNGRIDDALT 620



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 132/315 (41%), Gaps = 2/315 (0%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + + + I E M+     PD   +  +I  L     LD  L  +  M    V      Y
Sbjct: 437 GMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVY 496

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY-GVLIEGLVGEGKVGKACDLLKDLV 300
             LI G C  G +V+  EL  EM    I      Y   +I  L  EG+V +  D++  +V
Sbjct: 497 GCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMV 556

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +G R ++  +NS++ G C V   ++A+ L +      + P+      L+    + GR+D
Sbjct: 557 QTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRID 616

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
           +   +   M        + L       + +  R   A  +F E+   G + S+  Y +++
Sbjct: 617 DALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVL 676

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
           G L       +A  L  K+  +N++ + ++F+I I    + G   EA E  + I     V
Sbjct: 677 GGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLV 736

Query: 480 PSVAAYNCLTKGLCK 494
           P++  Y+ +   L K
Sbjct: 737 PNIQTYSMMITNLIK 751



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 161/383 (42%), Gaps = 38/383 (9%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+   +  +I   A    +D  + ++E+M+   +  D + + T+I  LC+ GR+      
Sbjct: 421 PNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHK 480

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA-DLGIYNSIIGGLC 319
           F  M + G+    A+YG LI+G    G++ KA +L+ ++++       +  ++SII  LC
Sbjct: 481 FNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLC 540

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +  +  +   + ++ VQ    P+  T N L+     +G M+  F LL  M          
Sbjct: 541 KEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMAS-------- 592

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
                   +G E                      IY  L+    + G +  AL +F  M 
Sbjct: 593 --------IGIEPNCY------------------IYGTLVDGYCKNGRIDDALTVFRDML 626

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              ++  S+ +SI +    ++     A +  +++IE     S+  Y  +  GLC+    D
Sbjct: 627 HKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTD 686

Query: 500 AAMMLVRDCLG-NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
            A ML+      NV      F   ++ +   + G  ++  E+ + ++  G  PN    S 
Sbjct: 687 EANMLLEKLFAMNVKFDIITFNIVISAMF--KVGRRQEAKELFDAISTYGLVPNIQTYSM 744

Query: 559 IISGMCKHGTLEEARKVFTNLRE 581
           +I+ + K  + EEA  +F ++ +
Sbjct: 745 MITNLIKEESYEEADNLFISVEK 767



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 142/315 (45%), Gaps = 28/315 (8%)

Query: 161 CLSRNNLFRAADQVPELMDS-------------------QGRIAEMLEILEKMRRNLCKP 201
           C +   L +A + + E+M+                    +GR+AE  +I++ M +   +P
Sbjct: 503 CCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRP 562

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +V  + +++       N++    + + M    +E +   Y TL+ G CK GR+     +F
Sbjct: 563 NVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVF 622

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           R+M   G+     +Y +++ GL    +   A  +  ++++SG    +  Y  ++GGLCR 
Sbjct: 623 RDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRN 682

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
              D+A  L E     ++  D  T N ++    ++GR     +L   +    + +  +++
Sbjct: 683 NCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAIS--TYGLVPNIQ 740

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKKA---LYLF 435
            +   +    KEE    A ++F  ++  G++S   + N ++  LL   EV KA   L + 
Sbjct: 741 TYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSII 800

Query: 436 GKMRGLNLEVNSLSF 450
           G+   L LE +++S 
Sbjct: 801 GE-NNLTLEASTISL 814



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/455 (20%), Positives = 187/455 (41%), Gaps = 30/455 (6%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           + G + N  +YN+L +  S + ++  + +V + M S G I                P V 
Sbjct: 308 EAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVI----------------PTVD 351

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVV---RGHELF 261
              + I  L      +    +++ M     + D+++Y T    +C     V     H +F
Sbjct: 352 NCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTNASWVCYWYVTVVWVMWHNIF 411

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             M   GI  ++ ++ +LI      G + KA  + +D+ + G   D   + ++I  LCR+
Sbjct: 412 NLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRI 471

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            + D A   F   V   + P  +    L+  C   G +    +L+++M  +   +     
Sbjct: 472 GRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEM--MNKDIPPPGV 529

Query: 382 KFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
           K+F  ++    KE R+    D+ + +   G   +V  +N LM     +G +++A  L   
Sbjct: 530 KYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDA 589

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M  + +E N   +   +  + ++G I +A      ++     P+   Y+ +  GL +   
Sbjct: 590 MASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARR 649

Query: 498 IDAAMMLVRDCLGNVASGPTE--FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
             AA  +  +    + SG T     Y + +  +CR+   ++   +L ++       + + 
Sbjct: 650 TTAAKKMFHEM---IESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIIT 706

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            + +IS M K G  +EA+++F  +    L+    T
Sbjct: 707 FNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQT 741



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 101/276 (36%), Gaps = 54/276 (19%)

Query: 145 QKGYKHNFASYNAL--AYCLSRN--NLFRAADQVPE------------LMDS---QGRIA 185
           Q G + N  ++N+L   YCL  N    F   D +              L+D     GRI 
Sbjct: 557 QTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRID 616

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + L +   M     KP    Y+ ++  L   R   A  +++ EM +      +  Y  ++
Sbjct: 617 DALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVL 676

Query: 246 MGLCKG-----------------------------------GRVVRGHELFREMKENGIL 270
            GLC+                                    GR     ELF  +   G++
Sbjct: 677 GGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLV 736

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
            +   Y ++I  L+ E    +A +L   +  SG+ +D  + N I+  L    +  KA   
Sbjct: 737 PNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNY 796

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
             +  +++L  + ST++ L    +  G+     KLL
Sbjct: 797 LSIIGENNLTLEASTISLLASLFSREGKYREHIKLL 832


>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
          Length = 796

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 126/550 (22%), Positives = 226/550 (41%), Gaps = 66/550 (12%)

Query: 103 WGPQVVTELSKL-RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHN-FASYNALAY 160
           W P++  EL  L R + P  V  VL+++ +  +A +FF+WA +Q  Y+H+      A  Y
Sbjct: 178 WNPKLEGELRHLLRSLKPRQVCAVLQLQTDERVALRFFYWADRQWRYRHDPIRRPEAFGY 237

Query: 161 CL---SRNNLFRAADQVPELMDSQG-------------------RIAEMLEILEKMRRNL 198
            +   SR    R A +V  +M   G                   R+ + +  LE+M+   
Sbjct: 238 VMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVE 297

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV--VR 256
            +P+V  Y  +I+       L+  + +  EM       D ++Y T++  LCK  R+  VR
Sbjct: 298 IEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVR 357

Query: 257 -----------------------------GH-----ELFREMKENGILIDRAIYGVLIEG 282
                                        GH     E  RE +E    +D+  Y  ++  
Sbjct: 358 LLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHS 417

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
              EG++ KA +++ ++   G   D+  Y S+I GLC+ ++ D+A K+     +    P+
Sbjct: 418 FCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPN 477

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
             +   LL    + G      +++   E+  +   A           +E +   A D+  
Sbjct: 478 TVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVR 537

Query: 403 ELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           E+  KG+   P+  N+L+ +L +  +V +A     +       VN ++F+  I    +  
Sbjct: 538 EMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKD 597

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
           D+  A    + +   ++ P V  Y  +   L K G I+ A  L    L  V   PT   Y
Sbjct: 598 DLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKML-RVGLIPTPVTY 656

Query: 522 ALTILHVCRSGEAEKIIEVLNEM-TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
              I   CR G  E ++++L +M +++ C       + +I  +C  G LE+A K+   + 
Sbjct: 657 RTVIHQYCRMGRVEDLLKLLEKMLSRQEC---RTAYNQVIEKLCSFGNLEQAYKLLGKVL 713

Query: 581 ERKLLTEANT 590
                 +ANT
Sbjct: 714 RTASKIDANT 723



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 173/408 (42%), Gaps = 49/408 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ +  EI+ +M    C PDV  YT++I  L  ER +D   ++  +M K   + + ++
Sbjct: 421 EGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVS 480

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ GLCK G  +   E+    +E+  + +   Y VL+ G   EGK  +ACDL+++++
Sbjct: 481 YTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMI 540

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G+       N +I  LC+ ++ D+A +  E  + +  A     VN +           
Sbjct: 541 KKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCA-----VNVV----------- 584

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELK-GKGYSSVPIYNILM 419
           NF  ++       F    DLE               AL + +++     +  V  Y  ++
Sbjct: 585 NFTTVIH-----GFCQKDDLEA--------------ALSLLDDMYLSNKHPDVVTYTTII 625

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            AL + G +++A  L  KM  + L    +++   I  +   G + +  +   K+  +S+ 
Sbjct: 626 DALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKM--LSRQ 683

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
               AYN + + LC  G ++ A  L    LG V    T  K      H+       K I 
Sbjct: 684 ECRTAYNQVIEKLCSFGNLEQAYKL----LGKVLR--TASKIDANTCHMLIESYLSKGIP 737

Query: 540 VLN-----EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           +++      M      P+  +C  +   +   G  EEA K+     ER
Sbjct: 738 LMSYNVACRMFNRNLIPDLKLCEKVSKKLMLEGKSEEADKLILRFVER 785


>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
          Length = 882

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/447 (23%), Positives = 203/447 (45%), Gaps = 40/447 (8%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +P+V  YT +I      + L+  L +++EM    +  DV+ Y  ++ GLCK G+V     
Sbjct: 84  EPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKS 143

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           +FREM+E G++ +R  Y  LI+ L  EG V +A  L   +V  G   D+ +Y +++ GL 
Sbjct: 144 VFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLF 203

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-------L 372
           +    + A  +F+V +++ L P+  T + L+    ++G ++    LL +ME+       +
Sbjct: 204 KAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVI 263

Query: 373 KFSVAAD--------------LEKFFE-------FLVG-------KEERIMMALDVFEEL 404
            +S   D              + K  +       F+ G       K ++  +ALD+F+E+
Sbjct: 264 VYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEM 323

Query: 405 KGKGYSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
           K +G      + +  +  L   G +++A  LF  M    L  + ++++  +    ++G  
Sbjct: 324 KSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKE 383

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
            +A     ++ E S    V AYN L  GL K+G+ ++        +  +   P    +  
Sbjct: 384 SDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESF--HTGMRQLGLAPDSATFNT 441

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I   C+ G     +++LNEM   G  PN + C+ ++  +C  G +E+   +  ++    
Sbjct: 442 MINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMG 501

Query: 584 LLTEANTIVYDEILIEHMKKKTADLVL 610
                 T  +  +L    K + AD++L
Sbjct: 502 FHPTPTT--HKAVLDASSKSRRADVIL 526



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 177/426 (41%), Gaps = 46/426 (10%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + E ++++ KM +    P+VF Y  +I            L +++EMK   +E +   
Sbjct: 275 KGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFV 334

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             + +  L + GR+    ELF++M   G+L DR  Y  +++G    GK   A ++ +++ 
Sbjct: 335 IDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMT 394

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV-QDDLAPDFSTVNPLLVCCAEMGRM 359
           +     D+  YN +I GL ++ +++   + F   + Q  LAPD +T N ++    + G +
Sbjct: 395 EKSSGFDVVAYNVLINGLFKLGKYES--ESFHTGMRQLGLAPDSATFNTMINAYCKEGNL 452

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYN 416
            N  KLL +M                                     K Y   P     N
Sbjct: 453 GNALKLLNEM-------------------------------------KSYGLKPNSITCN 475

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+  L   GE++K + L   M  +       +    +    +S         H++++ M
Sbjct: 476 ILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHXHDQLVGM 535

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
                ++ YN L    C++G I  A ++ +D +G          Y   I   C S   +K
Sbjct: 536 GVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADI-ITYNALIHGYCISSHLKK 594

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
              V ++M  EG  PN    + ++ G+     ++EA  +   ++ER L+  A T  YD +
Sbjct: 595 AFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATT--YDIL 652

Query: 597 LIEHMK 602
           +  H K
Sbjct: 653 VSGHGK 658



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 157/362 (43%), Gaps = 20/362 (5%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +   V  +  LI G C+ G + R  EL   MK  G   D   Y  L+ G    G +  A 
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            L+ ++       ++  Y ++I   C+ +  + A  +++      L PD  T   ++   
Sbjct: 73  KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 354 AEMGRMDNFFKLLAQMEKL-----KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
            + G+++    +  +ME++     +FS A  ++  F+     E  ++    V   ++G G
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMV---VRGIG 189

Query: 409 YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           +  V +Y  LM  L + G    A  +F  +   +L  N +++S  I  H + GD+ +   
Sbjct: 190 FDVV-VYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGEL 248

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYAL 523
              ++ E    P+V  Y+ +  G  K G ++ AM     M+ R+ L NV      F Y  
Sbjct: 249 LLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNV------FVYGT 302

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I    ++ +    +++  EM   G   N  +  + ++ + + G +EEA ++F ++  R 
Sbjct: 303 LIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRG 362

Query: 584 LL 585
           LL
Sbjct: 363 LL 364



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 104/210 (49%), Gaps = 4/210 (1%)

Query: 394 IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           I  A+++ E +K +G +  +  YN LM    +IG++  A  L G++  +NLE N ++++ 
Sbjct: 33  ISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTT 92

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
            I  + +S  + +A   ++++   S VP V  Y C+  GLCK G+++ A  + R+ +  V
Sbjct: 93  LIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFRE-MEEV 151

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              P  F YA  I  + + G   +   +   M   G   + V+ +A++ G+ K G    A
Sbjct: 152 GVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNA 211

Query: 573 RKVFTNLRERKLLTEANTIVYDEILIEHMK 602
             +F  L E  L+   N + Y  ++  H K
Sbjct: 212 EDMFQVLLEESLV--PNCVTYSALIDGHCK 239



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 105/479 (21%), Positives = 188/479 (39%), Gaps = 62/479 (12%)

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIR-VLAAERNLD 220
           L  NN     D     +   GR+ E  E+ + M      PD   YT+M+     A +  D
Sbjct: 328 LEENNF--VIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESD 385

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGL-------------------------------- 248
           A   + +EM +     DV+AY  LI GL                                
Sbjct: 386 A-FNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMIN 444

Query: 249 --CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
             CK G +    +L  EMK  G+  +     +L++ L   G++ K  DLL D++  G+  
Sbjct: 445 AYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHP 504

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
               + +++    + ++ D      +  V   +  D ST N L+     +G +     + 
Sbjct: 505 TPTTHKAVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVF 564

Query: 367 AQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
             M  +   + AD+  +   + G      +  A  V  ++  +G S +V  YNIL+G L 
Sbjct: 565 KDM--MGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLS 622

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
               +K+A  L  +M+   L  N+ ++ I +  H + G++ E  + + ++I    VP   
Sbjct: 623 AARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTR 682

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI---------------LHV 528
            YN L     K  ++  A  L+++ +      P    Y + I               L  
Sbjct: 683 TYNVLISCFAKGKKMSQAKELMQE-MQVRGIPPNSSTYDILICGWYKLSKQPELNKSLKR 741

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
               EA+++ E   EM ++G  P E   + I   + K G   +A+++   L ++K + E
Sbjct: 742 SYQAEAKRLFE---EMNEKGFIPCENTLACISFTLAKPGKKADAQRILNKLYKKKTVQE 797



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 126/305 (41%), Gaps = 22/305 (7%)

Query: 136 SKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMD-------------- 179
           S+ FH   +Q G   + A++N +  AYC    NL  A   + E+                
Sbjct: 420 SESFHTGMRQLGLAPDSATFNTMINAYC-KEGNLGNALKLLNEMKSYGLKPNSITCNILV 478

Query: 180 ----SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
               + G I + +++L  M      P    + A++   +  R  D  L   +++    V+
Sbjct: 479 QRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHXHDQLVGMGVK 538

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            D+  Y TLI   C+ G + R   +F++M   GIL D   Y  LI G      + KA  +
Sbjct: 539 LDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAV 598

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
              ++  G   ++  YN ++GGL   +   +A  L     +  L P+ +T + L+    +
Sbjct: 599 HSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGK 658

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPI 414
           +G M    KL  +M    F               K +++  A ++ +E++ +G   +   
Sbjct: 659 IGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSST 718

Query: 415 YNILM 419
           Y+IL+
Sbjct: 719 YDILI 723



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 111/276 (40%), Gaps = 36/276 (13%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGK--QKGYKHNFASYNALAYCLSRNNLFRAADQVP 175
           TP     VL   +    A    H   +    G K + ++YN L     R  + R A  V 
Sbjct: 505 TPTTHKAVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVF 564

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           + M  +G +A                D+  Y A+I       +L     V  +M  + V 
Sbjct: 565 KDMMGKGILA----------------DIITYNALIHGYCISSHLKKAFAVHSQMLTEGVS 608

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            +V  Y  L+ GL     +     L  +MKE G++ +   Y +L+    G GK+G   + 
Sbjct: 609 PNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVS---GHGKIGNMKEC 665

Query: 296 LK---DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
           +K   +++  G+      YN +I    + K+  +A +L +      + P+ ST + +L+C
Sbjct: 666 VKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYD-ILIC 724

Query: 353 CAEMGRMDNFFKLLAQME---KLKFSVAADLEKFFE 385
                    ++KL  Q E    LK S  A+ ++ FE
Sbjct: 725 --------GWYKLSKQPELNKSLKRSYQAEAKRLFE 752


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 190/428 (44%), Gaps = 24/428 (5%)

Query: 182 GRIAEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           G     L++L KM   +   P+V  Y+A+I  L  +        ++ EM++  +  D+  
Sbjct: 233 GDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y ++I+G C  GR     +L +EM E  I  D   Y  LI   V EGK  +A +L  +++
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEML 352

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   +   Y+S+I G C+  + D A  +F +      +P+  T N L+       R+D
Sbjct: 353 PRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRID 412

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFE-----FLVGKEERIMMALDVFEELKGKGYS-SVPI 414
           +  +LL +M +    + AD   +       +LVG    +  ALD+ +E+   G    +  
Sbjct: 413 DGMELLHEMTET--GLVADTTTYNTLIHGFYLVGD---LNAALDLLQEMISSGLCPDIVT 467

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGL-----------NLEVNSLSFSIAIQCHVESGDI 463
            + L+  L + G++K AL +F  M+              +E +  +++I I   +  G  
Sbjct: 468 CDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKF 527

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
           LEA E + ++     VP    Y+ +  GLCK   +D A  +  D +G+ +  P    +  
Sbjct: 528 LEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF-DSMGSKSFSPNVVTFTT 586

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I   C++G  +  +E+  EM + G   N +    +I G  K G +  A  +F  +    
Sbjct: 587 LINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG 646

Query: 584 LLTEANTI 591
           +  +  TI
Sbjct: 647 VYPDTITI 654



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/450 (22%), Positives = 205/450 (45%), Gaps = 21/450 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + R++E L +  +M    C+P+V  +T ++  L  E  +   + + + M +D ++   + 
Sbjct: 162 EDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y T++ G+CK G  V   +L R+M+E + I+ +  IY  +I+ L  +G+   A +L  ++
Sbjct: 222 YGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            + G   DL  YNS+I G C   ++  A +L +  ++  ++PD  T N L+    + G+ 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
               +L  +M  L   +  +   +   + G  K+ R+  A  +F  +  KG S ++  +N
Sbjct: 342 FEAEELYDEM--LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFN 399

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+        +   + L  +M    L  ++ +++  I      GD+  A +   ++I  
Sbjct: 400 TLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISS 459

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV----ASGPTEF------KYALTIL 526
              P +   + L  GLC  G++  A+ + +    +     AS P          Y + I 
Sbjct: 460 GLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILIS 519

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
            +   G+  +  E+  EM   G  P+ +  S++I G+CK   L+EA ++F ++  +    
Sbjct: 520 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSF-- 577

Query: 587 EANTIVYDEILIEHMKKKTADLVLSGLKFF 616
             N + +  ++  + K    D    GL+ F
Sbjct: 578 SPNVVTFTTLINGYCKAGRVD---DGLELF 604



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 167/401 (41%), Gaps = 24/401 (5%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S GR ++  ++L++M      PDV  Y A+I     E        +++EM    +  + +
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y ++I G CK  R+     +F  M   G   +   +  LI+G  G  ++    +LL ++
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            ++G  AD   YN++I G   V   + A  L +  +   L PD  T + LL    + G++
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKL 481

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
            +  ++   M+K K     DL+    F  G E                    V  YNIL+
Sbjct: 482 KDALEMFKVMQKSK----KDLDASHPF-NGVE------------------PDVQTYNILI 518

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L+  G+  +A  L+ +M    +  +++++S  I    +   + EA +  + +   S  
Sbjct: 519 SGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFS 578

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+V  +  L  G CK G +D  + L  + +G          Y   I    + G     ++
Sbjct: 579 PNVVTFTTLINGYCKAGRVDDGLELFCE-MGRRGIVANAITYITLICGFRKVGNINGALD 637

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           +  EM   G  P+ +    +++G+     L+ A  +   L+
Sbjct: 638 IFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 185/406 (45%), Gaps = 17/406 (4%)

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
           ++ + +KM R   + D++++T +I+   +   L   L  + ++ K  +  DV+ + TL+ 
Sbjct: 98  VISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLH 157

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC   RV     LF +M E     +   +  L+ GL  EG++ +A  LL  +++ G + 
Sbjct: 158 GLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQP 217

Query: 307 DLGIYNSIIGGLCR----VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
               Y +I+ G+C+    V   D   K+ E++    + P+    + ++    + GR  + 
Sbjct: 218 TQITYGTIVDGMCKIGDTVSALDLLRKMEEIS---HIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILM 419
             L  +M++    +  DL  +   +VG     R   A  + +E+  +  S  V  YN L+
Sbjct: 275 QNLFTEMQEK--GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALI 332

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            A ++ G+  +A  L+ +M    +  N++++S  I    +   +  A      +      
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDC--LGNVASGPTEFKYALTILHVCRSGEAEKI 537
           P++  +N L  G C    ID  M L+ +    G VA   T   Y   I      G+    
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTT---YNTLIHGFYLVGDLNAA 449

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
           +++L EM   G  P+ V C  ++ G+C +G L++A ++F  +++ K
Sbjct: 450 LDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 3/202 (1%)

Query: 397 ALDVFEE-LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A+D+F + L+ +   SV  +  LMG ++ +      + L+ KM    +  +  SF+I I+
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIK 122

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
           C      +  A     KI ++   P V  +N L  GLC    +  A+ L    +      
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQ-MFETTCR 181

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    +   +  +CR G   + + +L+ M ++G  P ++    I+ GMCK G    A  +
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDL 241

Query: 576 FTNLRERKLLTEANTIVYDEIL 597
              + E   +   N ++Y  I+
Sbjct: 242 LRKMEEISHII-PNVVIYSAII 262



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 89/199 (44%), Gaps = 11/199 (5%)

Query: 186 EMLEILEKMRRNL--------CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           EM ++++K +++L         +PDV  Y  +I  L  E        ++EEM    +  D
Sbjct: 486 EMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 545

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
            + Y ++I GLCK  R+    ++F  M       +   +  LI G    G+V    +L  
Sbjct: 546 TITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFC 605

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           ++   G  A+   Y ++I G  +V   + A  +F+  +   + PD  T+  +L     + 
Sbjct: 606 EMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML---TGLW 662

Query: 358 RMDNFFKLLAQMEKLKFSV 376
             +   + +A +EKL+ S+
Sbjct: 663 SKEELKRAVAMLEKLQMSM 681


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 183/405 (45%), Gaps = 26/405 (6%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L + ++M  N    D F +  +I   +          V+ ++ K   + + + + TLI G
Sbjct: 90  LSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTLIKG 149

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC  G + +      ++   G  +D+  YG LI GL   G++  A  LLK +     + +
Sbjct: 150 LCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPN 209

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
             +YN II  +C+ K  + A+ L+   V   ++PD  T N L+     MG++     LL 
Sbjct: 210 AVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLH 269

Query: 368 QM-------EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
           +M           FS+  D   F +    KE ++M+ +     +K      V  YN LM 
Sbjct: 270 KMILENINPRMYTFSILVD--AFCKEGKVKEAKMMLGV----TMKKDIILDVVTYNSLMD 323

Query: 421 ALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHV----ESGDILEACECHNKII 474
               + E+ KA  +F  M  RG+   V S +  I   C +    E+ ++ E   C  KII
Sbjct: 324 GYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCR-KII 382

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                P+V  YN L  GL K+G+I   + LV D + +    P    Y   +  +C++   
Sbjct: 383 -----PNVVTYNSLIDGLGKLGKISCVLKLV-DEMHDRGQPPNIITYNSILDALCKNHHV 436

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           +K I +L  +  +G  P+    + +I G+C+ G LE+A+KVF +L
Sbjct: 437 DKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDL 481



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 162/370 (43%), Gaps = 6/370 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI   L++L+++   L +P+   Y  +I  +   + ++    ++ +M    +  D    
Sbjct: 189 GRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTC 248

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI G C  G++     L  +M    I      + +L++    EGKV +A  +L   + 
Sbjct: 249 NSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMK 308

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                D+  YNS++ G C VK+ +KA  +F+      +  +  +   ++    ++  +D 
Sbjct: 309 KDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDE 368

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGY-SSVPIYNIL 418
              L  +M   K  +  ++  +   +  +GK  +I   L + +E+  +G   ++  YN +
Sbjct: 369 AVNLFEEMRCRK--IIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSI 426

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + AL +   V KA+ L   ++   +  +  ++++ I+   +SG + +A +    ++    
Sbjct: 427 LDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGY 486

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
              V  Y  + +G C  G  DAA+ L+     N    P    Y + IL +    E +   
Sbjct: 487 NLDVYTYTVMIQGFCVKGLFDAALALLSKMEDN-GCIPNAKTYEIVILSLFEKDENDMAE 545

Query: 539 EVLNEMTQEG 548
           ++L EM   G
Sbjct: 546 KLLREMIARG 555



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 115/268 (42%), Gaps = 31/268 (11%)

Query: 151 NFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIA-------------------EMLE 189
           +  +YN+L   YCL +      A  + + M S+G IA                   E + 
Sbjct: 314 DVVTYNSLMDGYCLVKE--INKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVN 371

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           + E+MR     P+V  Y ++I  L     +   L++ +EM       +++ Y +++  LC
Sbjct: 372 LFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALC 431

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K   V +   L   +K+ GI  D   Y VLI+GL   GK+  A  + +DL+  GY  D+ 
Sbjct: 432 KNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVY 491

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            Y  +I G C    FD A  L      +   P+  T   +++   E    D   KLL +M
Sbjct: 492 TYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMAEKLLREM 551

Query: 370 EKLKFSVAADL--EKFFEFLVGKEERIM 395
                 +A  L  EK + +L  KE  +M
Sbjct: 552 ------IARGLLDEKSYIYLASKETGVM 573



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 111/275 (40%), Gaps = 36/275 (13%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ E   +L    +     DV  Y +++      + ++    +++ M    V A+V +
Sbjct: 293 EGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQS 352

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I GLCK   V     LF EM+   I+ +   Y  LI+GL   GK+     L+ ++ 
Sbjct: 353 YTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMH 412

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D G   ++  YNSI+  LC+    DKA  L        + PD  T   L+    + G+++
Sbjct: 413 DRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLE 472

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
           +                                   A  VFE+L  KGY+  V  Y +++
Sbjct: 473 D-----------------------------------AQKVFEDLLVKGYNLDVYTYTVMI 497

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
                 G    AL L  KM       N+ ++ I I
Sbjct: 498 QGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVI 532


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/479 (21%), Positives = 205/479 (42%), Gaps = 52/479 (10%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           + KG   N  +YN +   + R                +GR+ +  EIL ++     +PD+
Sbjct: 214 RAKGCTPNIVTYNVIINGMCR----------------EGRVDDAKEILNRLSSYGFQPDI 257

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            +YT +++ L A R  D    ++ EM       + + +  L+   C+GG V R  ++ ++
Sbjct: 258 VSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQ 317

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M ++G   +  +  ++I  +  +G+V  A D L ++   G   D   Y +++ GLCR  +
Sbjct: 318 MSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGR 377

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           ++ A +L    V+ +  P+  T N  +    + G ++   KL+  M +   SV       
Sbjct: 378 WEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNA 437

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
                  + R+  AL++F  L  +   +   Y  L+  L     +  A  L  +M   + 
Sbjct: 438 LVHGFCVQGRVDSALELFNNLPCE--PNTITYTTLLTGLCHAERLDAAAELLAEMIQKDC 495

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
            +N+++F++ +    + G + EA E  N+++E    P++  +N L  G+ K    + A+ 
Sbjct: 496 PLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALE 555

Query: 504 LVRDCLG--------------NVASGPTEFKYALTILH--------------------VC 529
           L+   +               +V S     + A+ +LH                    +C
Sbjct: 556 LLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALC 615

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           +  E ++ I+    M   GC PNE     +I G+   G L+EAR V + L  + +L+++
Sbjct: 616 KRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGVLSKS 674



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/435 (20%), Positives = 184/435 (42%), Gaps = 24/435 (5%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C+P V  YT ++  +         + V +EM+      +++ Y  +I G+C+ GRV    
Sbjct: 183 CQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAK 242

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           E+   +   G   D   Y  +++GL    +      L  ++VD     +   ++ ++   
Sbjct: 243 EILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFF 302

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           CR    ++A ++ +   Q    P+ +  N ++    + GR+D+ +  L  M    +    
Sbjct: 303 CRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMG--MYGCNP 360

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLF 435
           D   +   L G  +  R   A ++  E+  K      + +N  +  L + G +++A+ L 
Sbjct: 361 DTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLI 420

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             M      V  ++++  +      G +  A E  N    +   P+   Y  L  GLC  
Sbjct: 421 ELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNN---LPCEPNTITYTTLLTGLCHA 477

Query: 496 GEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
             +DAA      M+ +DC  N  +      + + +   C+ G  E+ +E++N+M + GC 
Sbjct: 478 ERLDAAAELLAEMIQKDCPLNAVT------FNVLVSFFCQKGFVEEAMELVNQMMEHGCT 531

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD---EILIEHMKKKTAD 607
           PN +  + ++ G+ K    EEA ++   L  + +    +TI Y    ++L    + + A 
Sbjct: 532 PNLITFNTLLDGITKDCNSEEALELLHGLVSKGV--SLDTITYSSVVDVLSREDRTEEAI 589

Query: 608 LVLSGLKFFGLESKL 622
            +L  ++  G+  K+
Sbjct: 590 QMLHAVQDMGMRPKV 604



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 146/373 (39%), Gaps = 48/373 (12%)

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M + G       Y VL+E +      G+A ++L ++   G   ++  YN II G+CR  +
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGR 237

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF---SVAADL 380
            D A ++          PD  +   +L       R D+   L A+M   K     V  D+
Sbjct: 238 VDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDM 297

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM- 438
              F    G  ER   A+ V +++   G + +  + NI++ A+ + G V  A      M 
Sbjct: 298 LVRFFCRGGMVER---AIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMG 354

Query: 439 ---------------RGL-------------------NLEVNSLSFSIAIQCHVESGDIL 464
                          RGL                   N   N ++F+  I    + G I 
Sbjct: 355 MYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIE 414

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
           +A +    + E      +  YN L  G C  G +D+A+ L      N+   P    Y   
Sbjct: 415 QAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALEL----FNNLPCEPNTITYTTL 470

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           +  +C +   +   E+L EM Q+ CP N V  + ++S  C+ G +EEA ++   + E   
Sbjct: 471 LTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHG- 529

Query: 585 LTEANTIVYDEIL 597
               N I ++ +L
Sbjct: 530 -CTPNLITFNTLL 541


>gi|255544732|ref|XP_002513427.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547335|gb|EEF48830.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 567

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/478 (23%), Positives = 209/478 (43%), Gaps = 55/478 (11%)

Query: 134 LASKFFHWAGKQK-GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
           ++  FFH     K G+K +      L Y L ++N  + A +V E+M S G I        
Sbjct: 78  ISDAFFHLEHIVKNGHKPDVVQATQLLYDLCKSNKMKKAIRVMEMMISCGII-------- 129

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
                   PD  +YT ++  L    N+   +++ E+M+     A+ + Y TL+ GLC  G
Sbjct: 130 --------PDAASYTFLVNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHG 181

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
            + +  +    + + G++ +   Y  L+E    E  V +A  LL +++  G + +L  YN
Sbjct: 182 NLNKSLQFLDRLMQKGLVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYN 241

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
            ++ GLC+  + ++A +LF+       +P+  + N LL      GR +   +LLA+M   
Sbjct: 242 VLLTGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANELLAEMN-- 299

Query: 373 KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKAL 432
                           G+E                   S+  YNIL+G+L   G++++AL
Sbjct: 300 ----------------GRERS----------------PSIVTYNILIGSLAFHGKIEQAL 327

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            +  +M     +  + S++  I    + G +     C +++I     P+   +N +   L
Sbjct: 328 QVIDEMMMGPFKPTATSYNPIIARLCKEGKVEAVVNCLDQMIFGRCSPNEGTFNAIAV-L 386

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           C  G++  A  L++  LGN  +      Y   +  +C+ G       +L EMT+ G  P+
Sbjct: 387 CYEGKVQEAFSLIQS-LGNKQNSSIHDYYKGVVSCLCKKGNTYPAFLLLYEMTKYGFTPD 445

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVL 610
               S++I G+C  G L EA ++F  L E     + +   ++ +++   K    DL L
Sbjct: 446 SYTYSSLIRGLCIEGMLYEAMEIFKLLEEDHYRPDIDN--FNALILGFCKSHRTDLSL 501



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 58/110 (52%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +L +M +    PD + Y+++IR L  E  L   + +++ +++D    D+  +  LI+G C
Sbjct: 433 LLYEMTKYGFTPDSYTYSSLIRGLCIEGMLYEAMEIFKLLEEDHYRPDIDNFNALILGFC 492

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           K  R     E+F  M E G       Y +L+EG++ E +   A ++L++L
Sbjct: 493 KSHRTDLSLEVFEMMIEKGYTPSETTYTILVEGIIHEEEKELAAEVLREL 542


>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 189/414 (45%), Gaps = 25/414 (6%)

Query: 116 RVTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSR---------- 164
           +V+P LV EVLK + N   LA  FF WA KQKG+ +N  SYNAL   L +          
Sbjct: 110 KVSPALVLEVLKRLSNAGALALSFFKWAEKQKGFMYNTESYNALIDSLGKIKQFNMIWNL 169

Query: 165 -NNLFRAADQVPELM-------DSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE 216
            N++ R      E            G++ E +   EKM +   K +   +  ++  L   
Sbjct: 170 VNDMKRKGVLTKETFALISRRYARSGKVKEAMNTFEKMEKFGLKIESTDFNRLLDTLIKS 229

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
           R + +   V+++MK      D+ +Y  L+ G  +   +++  E++REMK+ G   D   Y
Sbjct: 230 RQVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQEKNLLKLDEVYREMKDEGFEPDVVTY 289

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
           G+LI       K   A +L +++     +    I+ ++I GL  V++  +A + F  +  
Sbjct: 290 GILINAYCKVRKYDDAIELFREMESKNCQPSPHIFCTLINGLGSVRRLSEALEFFRRSKA 349

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
              AP+  T N ++       R+D+ ++++ +M K      +         + K E+   
Sbjct: 350 SGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSGVGPNSRTYDIILHHLIKAEKTTE 409

Query: 397 ALDVFEELKGKG--YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
           A  VFE++  +     +V  Y+I++     + +V+ A+ ++ +M+   +      FSI I
Sbjct: 410 AFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDKVESAIKVWDRMKAKGVHPGMHMFSILI 469

Query: 455 Q--CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
              CH    DI  AC+   +++++   P  A ++ L + L + G  D  ++L +
Sbjct: 470 NSLCHENKLDI--ACKYFQEMLDVGIRPPAALFSHLKQALIEDGRKDTVVLLAQ 521



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 13/195 (6%)

Query: 388 VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS 447
           +GK ++  M  ++  ++K KG  +   + ++       G+VK+A+  F KM    L++ S
Sbjct: 157 LGKIKQFNMIWNLVNDMKRKGVLTKETFALISRRYARSGKVKEAMNTFEKMEKFGLKIES 216

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG------LCKIGEIDAA 501
             F+  +   ++S  +L A    +K+     VP + +Y  L +G      L K+ E+   
Sbjct: 217 TDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQEKNLLKLDEVYRE 276

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           M        +    P    Y + I   C+  + +  IE+  EM  + C P+  I   +I+
Sbjct: 277 M-------KDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESKNCQPSPHIFCTLIN 329

Query: 562 GMCKHGTLEEARKVF 576
           G+     L EA + F
Sbjct: 330 GLGSVRRLSEALEFF 344



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 135/331 (40%), Gaps = 22/331 (6%)

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC---AEMGRM 359
           G+  +   YN++I  L ++KQF+  + L    V D       T     +     A  G++
Sbjct: 142 GFMYNTESYNALIDSLGKIKQFNMIWNL----VNDMKRKGVLTKETFALISRRYARSGKV 197

Query: 360 DNFFKLLAQMEKLKFSV-AADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNI 417
                   +MEK    + + D  +  + L+ K  +++ A +VF+++K + +   +  Y I
Sbjct: 198 KEAMNTFEKMEKFGLKIESTDFNRLLDTLI-KSRQVLSAQNVFDKMKIRRFVPDIKSYTI 256

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+    +   + K   ++ +M+    E + +++ I I  + +     +A E   ++   +
Sbjct: 257 LLEGWGQEKNLLKLDEVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESKN 316

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAE 535
             PS   +  L  GL  +  +  A+   R    + ASG  P    Y   +   C S   +
Sbjct: 317 CQPSPHIFCTLINGLGSVRRLSEALEFFR---RSKASGFAPETPTYNAVVGAYCWSMRID 373

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
               +++EM + G  PN      I+  + K     EA  VF  +   +   E     YD 
Sbjct: 374 DAYRMVDEMRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEE-ECEPTVSTYDI 432

Query: 596 ILIEHMKKKTADLVLSGLKFFGLESKLKAKG 626
           I+         D V S +K +    ++KAKG
Sbjct: 433 IVRMFC---NMDKVESAIKVW---DRMKAKG 457


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 184/422 (43%), Gaps = 44/422 (10%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
             R  + + +L++M+     PD+F Y ++I  L+  + +D       EM ++ ++ +   
Sbjct: 465 NSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFT 524

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y   I G  +        +  +EM+E G+L ++ +   LI     +GKV +AC   + +V
Sbjct: 525 YGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMV 584

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D G   D   Y  ++ GL +  + D A ++F       +APD  +   L+          
Sbjct: 585 DQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLI---------- 634

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
           N F  L  M+K                         A  +F+E+  +G + +V IYN+L+
Sbjct: 635 NGFSKLGNMQK-------------------------ASSIFDEMVEEGLTPNVIIYNMLL 669

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
           G     GE++KA  L  +M    L  N++++   I  + +SGD+ EA    +++     V
Sbjct: 670 GGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLV 729

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P    Y  L  G C++ +++ A+ +        AS    F   +    V + G+ E   E
Sbjct: 730 PDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALIN--WVFKFGKTELKTE 787

Query: 540 VLNEMTQEGC----PPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           VLN +          PN+V  + +I  +CK G LE A+++F  ++   L+     I Y  
Sbjct: 788 VLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLM--PTVITYTS 845

Query: 596 IL 597
           +L
Sbjct: 846 LL 847



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 184/409 (44%), Gaps = 37/409 (9%)

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           + Y   I V++ E  ++    +++ M    +     AY +LI G C+   V +G+EL  E
Sbjct: 348 YMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVE 407

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           MK+  I+I    YG +++G+   G +  A +++K+++ SG R ++ IY ++I    +  +
Sbjct: 408 MKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSR 467

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKLK---FSVAA 378
           F  A ++ +   +  +APD    N L++  ++  RMD     L +M    LK   F+  A
Sbjct: 468 FGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGA 527

Query: 379 DLEKFFE------------------------FLVG------KEERIMMALDVFEELKGKG 408
            +  + E                           G      K+ +++ A   +  +  +G
Sbjct: 528 FISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQG 587

Query: 409 -YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
                  Y +LM  L +  +V  A  +F +MRG  +  +  S+ + I    + G++ +A 
Sbjct: 588 ILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKAS 647

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
              ++++E    P+V  YN L  G C+ GEI+ A  L+ D +      P    Y   I  
Sbjct: 648 SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELL-DEMSVKGLHPNAVTYCTIIDG 706

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
            C+SG+  +   + +EM  +G  P+  + + ++ G C+   +E A  +F
Sbjct: 707 YCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF 755



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 127/533 (23%), Positives = 223/533 (41%), Gaps = 76/533 (14%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEM 187
           G + N   Y  L     +N+ F  A +V + M  QG                   R+ E 
Sbjct: 447 GCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEA 506

Query: 188 LEILEKMRRNLCKPDVFAYTAMIR--VLAAE----------------------------- 216
              L +M  N  KP+ F Y A I   + A+E                             
Sbjct: 507 RSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINE 566

Query: 217 -----RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
                + ++AC   +  M    +  D   Y  L+ GL K  +V    E+FREM+  GI  
Sbjct: 567 YCKKGKVIEAC-SAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAP 625

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           D   YGVLI G    G + KA  +  ++V+ G   ++ IYN ++GG CR  + +KA +L 
Sbjct: 626 DVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELL 685

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG-- 389
           +      L P+  T   ++    + G +   F+L  +M KLK  +  D   +   + G  
Sbjct: 686 DEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEM-KLK-GLVPDSFVYTTLVDGCC 743

Query: 390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV---- 445
           +   +  A+ +F   K    SS   +N L+  + + G+ +    +  ++   + +     
Sbjct: 744 RLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKP 803

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N ++++I I    + G++  A E  +++   + +P+V  Y  L  G  K+G   A M  V
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGR-RAEMFPV 862

Query: 506 RDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEM-----TQEGCPPNEVICSA 558
            D    +A+G  P    Y++ I    + G   K + ++++M       +GC  +   C A
Sbjct: 863 FD--EAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRA 920

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIV--YDEILIEHMKKKTADLV 609
           ++SG  K G +E A KV  N+   + + ++ T++   +E  I   ++  AD V
Sbjct: 921 LLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQRVEADAV 973



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 108/470 (22%), Positives = 190/470 (40%), Gaps = 52/470 (11%)

Query: 198 LCK---PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
           +CK   P  + Y  +I  L   + L+    +  EM    V  D   Y  LI GL KG   
Sbjct: 269 ICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNA 328

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
                L  EM  +GI I   +Y   I  +  EG + KA  L   ++ SG       Y S+
Sbjct: 329 DAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASL 388

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKL 372
           I G CR K   + Y+L     + ++     T   ++      G +D  + ++ +M     
Sbjct: 389 IEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGC 448

Query: 373 KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKA 431
           + +V         FL  +  R   A+ V +E+K +G +  +  YN L+  L +   + +A
Sbjct: 449 RPNVVIYTTLIKTFL--QNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEA 506

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVES------------------------------- 460
                +M    L+ N+ ++   I  ++E+                               
Sbjct: 507 RSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINE 566

Query: 461 ----GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
               G ++EAC  +  +++   +     Y  L  GL K  ++D A  + R+  G     P
Sbjct: 567 YCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK-GIAP 625

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
             F Y + I    + G  +K   + +EM +EG  PN +I + ++ G C+ G +E+A+++ 
Sbjct: 626 DVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELL 685

Query: 577 TNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKG 626
             +  + L    N + Y  I+  +   K+ DL     + F L  ++K KG
Sbjct: 686 DEMSVKGL--HPNAVTYCTIIDGYC--KSGDLA----EAFRLFDEMKLKG 727



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/587 (21%), Positives = 234/587 (39%), Gaps = 83/587 (14%)

Query: 78  TFQLQRHLSPIARFITDAFRK-----NQFQWGPQVVTELSKLRRVTPDLVAEVLKVE--N 130
            F L R  S     ++DA  +      Q  W   +V+    +  + P++V  VL+ +  +
Sbjct: 17  NFLLFRSFSVNVEKLSDASAEIAGILKQENWRDTLVSSNLSIE-INPEVVLSVLRSKRVD 75

Query: 131 NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE-LMDSQGRIAEMLE 189
           +P+    FF+W   QK  +    S++ LA  L     F  A  V E +++    +AE+  
Sbjct: 76  DPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNWPVAEVWS 135

Query: 190 ILEK----------------------MRRNLCKPDVFAYTAMI------RVLAAERNLDA 221
            + +                      + +   +  VF +++ +      R+   +  LDA
Sbjct: 136 SIVRCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDA 195

Query: 222 CLR---------VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE-LFREMKE----- 266
            LR         V++ M +  V  DV  Y  LI+  C+ G V  G + LF+  KE     
Sbjct: 196 LLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTAT 255

Query: 267 ---------------NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
                           G++  +  Y VLI+GL    ++  A  LL ++   G   D   Y
Sbjct: 256 LNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTY 315

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV-CC----AEMGRMDNFFKLL 366
           + +I GL + +  D A  L    V   +      + P +  CC    ++ G M+    L 
Sbjct: 316 SLLIDGLLKGRNADAAKGLVHEMVSHGI-----NIKPYMYDCCICVMSKEGVMEKAKALF 370

Query: 367 AQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP-IYNILMGALL 423
             M  +   +    + +   + G  +E+ +    ++  E+K +     P  Y  ++  + 
Sbjct: 371 DGM--IASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMC 428

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
             G++  A  +  +M       N + ++  I+  +++    +A     ++ E    P + 
Sbjct: 429 SSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIF 488

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            YN L  GL K   +D A   + + + N    P  F Y   I     + E     + + E
Sbjct: 489 CYNSLIIGLSKAKRMDEARSFLVEMVEN-GLKPNAFTYGAFISGYIEASEFASADKYVKE 547

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           M + G  PN+V+C+ +I+  CK G + EA   + ++ ++ +L +A T
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKT 594


>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
          Length = 795

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/447 (23%), Positives = 203/447 (45%), Gaps = 40/447 (8%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +P+V  YT +I      + L+  L +++EM    +  DV+ Y  ++ GLCK G+V     
Sbjct: 84  EPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKS 143

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           +FREM+E G++ +R  Y  LI+ L  EG V +A  L   +V  G   D+ +Y +++ GL 
Sbjct: 144 VFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLF 203

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-------L 372
           +    + A  +F+V +++ L P+  T + L+    ++G ++    LL +ME+       +
Sbjct: 204 KAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVI 263

Query: 373 KFSVAAD--------------LEKFFE-------FLVG-------KEERIMMALDVFEEL 404
            +S   D              + K  +       F+ G       K ++  +ALD+F+E+
Sbjct: 264 VYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEM 323

Query: 405 KGKGYSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
           K +G      + +  +  L   G +++A  LF  M    L  + ++++  +    ++G  
Sbjct: 324 KSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKE 383

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
            +A     ++ E S    V AYN L  GL K+G+ ++        +  +   P    +  
Sbjct: 384 SDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESF--HTGMRQLGLAPDSATFNT 441

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I   C+ G     +++LNEM   G  PN + C+ ++  +C  G +E+   +  ++    
Sbjct: 442 MINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMG 501

Query: 584 LLTEANTIVYDEILIEHMKKKTADLVL 610
                 T  +  +L    K + AD++L
Sbjct: 502 FHPTPTT--HKAVLDASSKSRRADVIL 526



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 177/426 (41%), Gaps = 46/426 (10%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + E ++++ KM +    P+VF Y  +I            L +++EMK   +E +   
Sbjct: 275 KGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFV 334

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             + +  L + GR+    ELF++M   G+L DR  Y  +++G    GK   A ++ +++ 
Sbjct: 335 IDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMT 394

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV-QDDLAPDFSTVNPLLVCCAEMGRM 359
           +     D+  YN +I GL ++ +++   + F   + Q  LAPD +T N ++    + G +
Sbjct: 395 EKSSGFDVVAYNVLINGLFKLGKYES--ESFHTGMRQLGLAPDSATFNTMINAYCKEGNL 452

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYN 416
            N  KLL +M                                     K Y   P     N
Sbjct: 453 GNALKLLNEM-------------------------------------KSYGLKPNSITCN 475

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+  L   GE++K + L   M  +       +    +    +S         H++++ M
Sbjct: 476 ILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGM 535

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
                ++ YN L    C++G I  A ++ +D +G          Y   I   C S   +K
Sbjct: 536 GVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADI-ITYNALIHGYCISSHLKK 594

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
              V ++M  EG  PN    + ++ G+     ++EA  +   ++ER L+  A T  YD +
Sbjct: 595 AFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATT--YDIL 652

Query: 597 LIEHMK 602
           +  H K
Sbjct: 653 VSGHGK 658



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 157/362 (43%), Gaps = 20/362 (5%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +   V  +  LI G C+ G + R  EL   MK  G   D   Y  L+ G    G +  A 
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            L+ ++       ++  Y ++I   C+ +  + A  +++      L PD  T   ++   
Sbjct: 73  KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 354 AEMGRMDNFFKLLAQMEKL-----KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
            + G+++    +  +ME++     +FS A  ++  F+     E  ++    V   ++G G
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMV---VRGIG 189

Query: 409 YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           +  V +Y  LM  L + G    A  +F  +   +L  N +++S  I  H + GD+ +   
Sbjct: 190 FDVV-VYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGEL 248

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYAL 523
              ++ E    P+V  Y+ +  G  K G ++ AM     M+ R+ L NV      F Y  
Sbjct: 249 LLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNV------FVYGT 302

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I    ++ +    +++  EM   G   N  +  + ++ + + G +EEA ++F ++  R 
Sbjct: 303 LIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRG 362

Query: 584 LL 585
           LL
Sbjct: 363 LL 364



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 104/210 (49%), Gaps = 4/210 (1%)

Query: 394 IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           I  A+++ E +K +G +  +  YN LM    +IG++  A  L G++  +NLE N ++++ 
Sbjct: 33  ISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTT 92

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
            I  + +S  + +A   ++++   S VP V  Y C+  GLCK G+++ A  + R+ +  V
Sbjct: 93  LIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFRE-MEEV 151

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              P  F YA  I  + + G   +   +   M   G   + V+ +A++ G+ K G    A
Sbjct: 152 GVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNA 211

Query: 573 RKVFTNLRERKLLTEANTIVYDEILIEHMK 602
             +F  L E  L+   N + Y  ++  H K
Sbjct: 212 EDMFQVLLEESLV--PNCVTYSALIDGHCK 239



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 104/476 (21%), Positives = 188/476 (39%), Gaps = 62/476 (13%)

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIR-VLAAERNLD 220
           L  NN     D     +   GR+ E  E+ + M      PD   YT+M+     A +  D
Sbjct: 328 LEENNF--VIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESD 385

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGL-------------------------------- 248
           A   + +EM +     DV+AY  LI GL                                
Sbjct: 386 A-FNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMIN 444

Query: 249 --CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
             CK G +    +L  EMK  G+  +     +L++ L   G++ K  DLL D++  G+  
Sbjct: 445 AYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHP 504

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
               + +++    + ++ D    + +  V   +  D ST N L+     +G +     + 
Sbjct: 505 TPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVF 564

Query: 367 AQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
             M  +   + AD+  +   + G      +  A  V  ++  +G S +V  YNIL+G L 
Sbjct: 565 KDM--MGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLS 622

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
               +K+A  L  +M+   L  N+ ++ I +  H + G++ E  + + ++I    VP   
Sbjct: 623 AARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTR 682

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI---------------LHV 528
            YN L     K  ++  A  L+++ +      P    Y + I               L  
Sbjct: 683 TYNVLISCFAKGKKMSQAKELMQE-MQVRGIPPNSSTYDILICGWYKLSKQPELNKSLKR 741

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
               EA+++ E   EM ++G  P E   + I   + K G   +A+++   L ++K+
Sbjct: 742 SYQAEAKRLFE---EMNEKGFIPCENTLACISFTLAKPGKKADAQRILNKLYKKKV 794



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 127/305 (41%), Gaps = 22/305 (7%)

Query: 136 SKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMD-------------- 179
           S+ FH   +Q G   + A++N +  AYC    NL  A   + E+                
Sbjct: 420 SESFHTGMRQLGLAPDSATFNTMINAYC-KEGNLGNALKLLNEMKSYGLKPNSITCNILV 478

Query: 180 ----SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
               + G I + +++L  M      P    + A++   +  R  D  L + +++    V+
Sbjct: 479 QRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVK 538

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            D+  Y TLI   C+ G + R   +F++M   GIL D   Y  LI G      + KA  +
Sbjct: 539 LDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAV 598

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
              ++  G   ++  YN ++GGL   +   +A  L     +  L P+ +T + L+    +
Sbjct: 599 HSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGK 658

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPI 414
           +G M    KL  +M    F               K +++  A ++ +E++ +G   +   
Sbjct: 659 IGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSST 718

Query: 415 YNILM 419
           Y+IL+
Sbjct: 719 YDILI 723



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 111/276 (40%), Gaps = 36/276 (13%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGK--QKGYKHNFASYNALAYCLSRNNLFRAADQVP 175
           TP     VL   +    A    H   +    G K + ++YN L     R  + R A  V 
Sbjct: 505 TPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVF 564

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           + M  +G +A                D+  Y A+I       +L     V  +M  + V 
Sbjct: 565 KDMMGKGILA----------------DIITYNALIHGYCISSHLKKAFAVHSQMLTEGVS 608

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            +V  Y  L+ GL     +     L  +MKE G++ +   Y +L+    G GK+G   + 
Sbjct: 609 PNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVS---GHGKIGNMKEC 665

Query: 296 LK---DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
           +K   +++  G+      YN +I    + K+  +A +L +      + P+ ST + +L+C
Sbjct: 666 VKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYD-ILIC 724

Query: 353 CAEMGRMDNFFKLLAQME---KLKFSVAADLEKFFE 385
                    ++KL  Q E    LK S  A+ ++ FE
Sbjct: 725 --------GWYKLSKQPELNKSLKRSYQAEAKRLFE 752


>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
          Length = 733

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/480 (24%), Positives = 212/480 (44%), Gaps = 20/480 (4%)

Query: 103 WGPQVVTELSKL-RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           W P++  EL  L R + P  V  VL+++ +  +A +FF+WA +Q  Y+H+   Y A+   
Sbjct: 84  WNPKLEGELRHLLRSLKPRQVCAVLQLQTDERVALRFFYWADRQWRYRHDPIVYYAMLEI 143

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221
           LS+  L + A +V  LM                RR   +P+ F Y  +    A +  L  
Sbjct: 144 LSKTKLCQGAKRVLRLMAK--------------RRIERRPEAFGYVMVSYSRAGK--LRN 187

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
            +R    M+K  +E D+    T I  L  G R+ +       M+   I  +   Y  LI+
Sbjct: 188 AMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIXPNVITYNCLIK 247

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD-DLA 340
           G     ++  A +L+ ++   G   D   Y +++G LC+ K+  +   L E  ++D +L 
Sbjct: 248 GYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKELRLLMEKMLKDSNLL 307

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400
           PD  T N  +   ++ G  D   + L + E+ +F V             +E R+  A ++
Sbjct: 308 PDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEI 367

Query: 401 FEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
             E+  KG    V  Y  ++  L +  +V +A  +  +M     + N++S++  +    +
Sbjct: 368 VNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCK 427

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           +G+ LEA E  N   E   +P+   Y+ L  G  + G+   A  LVR+ +      PT  
Sbjct: 428 NGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKK-GFFPTPV 486

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           +  L I  +C+  + ++    + +    GC  N V  + +I G C+   LE A  +  ++
Sbjct: 487 EINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDM 546



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 178/411 (43%), Gaps = 7/411 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMAY 241
           R+ +  E++ +M    C PD  +Y  ++  L  E+ +     + E+M KD  +  D + Y
Sbjct: 254 RLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKELRLLMEKMLKDSNLLPDQVTY 313

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T +  L K G      E  RE +E    +D+  Y  ++     EG++ KA +++ ++  
Sbjct: 314 NTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFS 373

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  Y S+I GLC+ ++ D+A K+     +    P+  +   LL    + G    
Sbjct: 374 KGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLE 433

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
             +++   E+  +   A           +E +   A D+  E+  KG+   P+  N+L+ 
Sbjct: 434 AREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQ 493

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           +L +  +V +A     +       VN ++F+  I    +  D+  A    + +   ++ P
Sbjct: 494 SLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHP 553

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  Y  +   L K G I+ A  L    L  V   PT   Y   I   CR G  E ++++
Sbjct: 554 DVVTYTTIIDALGKKGRIEEATKLAMKML-RVGWIPTPVTYRTVIHQYCRMGRVEDLLKL 612

Query: 541 LNEM-TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           L +M +++ C       + +I  +C  G LE+A K+   +       +ANT
Sbjct: 613 LEKMLSRQEC---RTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANT 660



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 171/408 (41%), Gaps = 49/408 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ +  EI+ +M    C PDV  YT++I  L  ER +D   ++  +M K   + + ++
Sbjct: 358 EGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVS 417

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ GLCK G  +   E+    +E   + +   Y VL+ G   EGK  +ACDL+++++
Sbjct: 418 YTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMI 477

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G+       N +I  LC+ ++ D+A +  E  + +  A     VN +           
Sbjct: 478 KKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCA-----VNVV----------- 521

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELK-GKGYSSVPIYNILM 419
           NF  ++       F    DLE               AL + +++     +  V  Y  ++
Sbjct: 522 NFTTVIH-----GFCQKDDLEA--------------ALSLLDDMYLSNKHPDVVTYTTII 562

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            AL + G +++A  L  KM  +      +++   I  +   G + +  +   K+  +S+ 
Sbjct: 563 DALGKKGRIEEATKLAMKMLRVGWIPTPVTYRTVIHQYCRMGRVEDLLKLLEKM--LSRQ 620

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
               AYN + + LC  G ++ A  L    LG V    T  K      H+       K I 
Sbjct: 621 ECRTAYNQVIEKLCSFGNLEQAYKL----LGKVLR--TASKIDANTCHMLIESYLSKGIP 674

Query: 540 VLN-----EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           +++      M      P+  +C  +   +   G  EEA K+     ER
Sbjct: 675 LMSYNVACRMFNRNLIPDLKLCEKVSKKLMLEGKSEEADKLILRFVER 722


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 184/422 (43%), Gaps = 44/422 (10%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
             R  + + +L++M+     PD+F Y ++I  L+  + +D       EM ++ ++ +   
Sbjct: 465 NSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFT 524

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y   I G  +        +  +EM+E G+L ++ +   LI     +GKV +AC   + +V
Sbjct: 525 YGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMV 584

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D G   D   Y  ++ GL +  + D A ++F       +APD  +   L+          
Sbjct: 585 DQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLI---------- 634

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
           N F  L  M+K                         A  +F+E+  +G + +V IYN+L+
Sbjct: 635 NGFSKLGNMQK-------------------------ASSIFDEMVEEGLTPNVIIYNMLL 669

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
           G     GE++KA  L  +M    L  N++++   I  + +SGD+ EA    +++     V
Sbjct: 670 GGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLV 729

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P    Y  L  G C++ +++ A+ +        AS    F   +    V + G+ E   E
Sbjct: 730 PDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALIN--WVFKFGKTELKTE 787

Query: 540 VLNEMTQEGC----PPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           VLN +          PN+V  + +I  +CK G LE A+++F  ++   L+     I Y  
Sbjct: 788 VLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLM--PTVITYTS 845

Query: 596 IL 597
           +L
Sbjct: 846 LL 847



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 184/409 (44%), Gaps = 37/409 (9%)

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           + Y   I V++ E  ++    +++ M    +     AY +LI G C+   V +G+EL  E
Sbjct: 348 YMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVE 407

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           MK+  I+I    YG +++G+   G +  A +++K+++ SG R ++ IY ++I    +  +
Sbjct: 408 MKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSR 467

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKLK---FSVAA 378
           F  A ++ +   +  +APD    N L++  ++  RMD     L +M    LK   F+  A
Sbjct: 468 FGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGA 527

Query: 379 DLEKFFE------------------------FLVG------KEERIMMALDVFEELKGKG 408
            +  + E                           G      K+ +++ A   +  +  +G
Sbjct: 528 FISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQG 587

Query: 409 -YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
                  Y +LM  L +  +V  A  +F +MRG  +  +  S+ + I    + G++ +A 
Sbjct: 588 ILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKAS 647

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
              ++++E    P+V  YN L  G C+ GEI+ A  L+ D +      P    Y   I  
Sbjct: 648 SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELL-DEMSVKGLHPNAVTYCTIIDG 706

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
            C+SG+  +   + +EM  +G  P+  + + ++ G C+   +E A  +F
Sbjct: 707 YCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF 755



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 127/533 (23%), Positives = 223/533 (41%), Gaps = 76/533 (14%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEM 187
           G + N   Y  L     +N+ F  A +V + M  QG                   R+ E 
Sbjct: 447 GCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEA 506

Query: 188 LEILEKMRRNLCKPDVFAYTAMIR--VLAAE----------------------------- 216
              L +M  N  KP+ F Y A I   + A+E                             
Sbjct: 507 RSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINE 566

Query: 217 -----RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
                + ++AC   +  M    +  D   Y  L+ GL K  +V    E+FREM+  GI  
Sbjct: 567 YCKKGKVIEAC-SAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAP 625

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           D   YGVLI G    G + KA  +  ++V+ G   ++ IYN ++GG CR  + +KA +L 
Sbjct: 626 DVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELL 685

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG-- 389
           +      L P+  T   ++    + G +   F+L  +M KLK  +  D   +   + G  
Sbjct: 686 DEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEM-KLK-GLVPDSFVYTTLVDGCC 743

Query: 390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV---- 445
           +   +  A+ +F   K    SS   +N L+  + + G+ +    +  ++   + +     
Sbjct: 744 RLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKP 803

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N ++++I I    + G++  A E  +++   + +P+V  Y  L  G  K+G   A M  V
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGR-RAEMFPV 862

Query: 506 RDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEM-----TQEGCPPNEVICSA 558
            D    +A+G  P    Y++ I    + G   K + ++++M       +GC  +   C A
Sbjct: 863 FD--EAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRA 920

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIV--YDEILIEHMKKKTADLV 609
           ++SG  K G +E A KV  N+   + + ++ T++   +E  I   ++  AD V
Sbjct: 921 LLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQRVEADAV 973



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 108/470 (22%), Positives = 190/470 (40%), Gaps = 52/470 (11%)

Query: 198 LCK---PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
           +CK   P  + Y  +I  L   + L+    +  EM    V  D   Y  LI GL KG   
Sbjct: 269 ICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNA 328

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
                L  EM  +GI I   +Y   I  +  EG + KA  L   ++ SG       Y S+
Sbjct: 329 DAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASL 388

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKL 372
           I G CR K   + Y+L     + ++     T   ++      G +D  + ++ +M     
Sbjct: 389 IEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGC 448

Query: 373 KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKA 431
           + +V         FL  +  R   A+ V +E+K +G +  +  YN L+  L +   + +A
Sbjct: 449 RPNVVIYTTLIKTFL--QNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEA 506

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVES------------------------------- 460
                +M    L+ N+ ++   I  ++E+                               
Sbjct: 507 RSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINE 566

Query: 461 ----GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
               G ++EAC  +  +++   +     Y  L  GL K  ++D A  + R+  G     P
Sbjct: 567 YCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK-GIAP 625

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
             F Y + I    + G  +K   + +EM +EG  PN +I + ++ G C+ G +E+A+++ 
Sbjct: 626 DVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELL 685

Query: 577 TNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKG 626
             +  + L    N + Y  I+  +   K+ DL     + F L  ++K KG
Sbjct: 686 DEMSVKGL--HPNAVTYCTIIDGYC--KSGDLA----EAFRLFDEMKLKG 727



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 126/587 (21%), Positives = 234/587 (39%), Gaps = 83/587 (14%)

Query: 78  TFQLQRHLSPIARFITDAFRK-----NQFQWGPQVVTELSKLRRVTPDLVAEVLKVE--N 130
            F L R  S     ++DA  +      Q  W   +V+    +  + P++V  VL+ +  +
Sbjct: 17  NFLLFRSFSVNVEKLSDASAEIAGILKQENWRDTLVSSNLSIE-INPEVVLSVLRSKRVD 75

Query: 131 NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE-LMDSQGRIAEMLE 189
           +P+    FF+W   QK  +    S++ LA  L     F  A  V E +++    +AE+  
Sbjct: 76  DPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNWPVAEVWS 135

Query: 190 ILEKMRRNLC-KPD---------------------VFAYTAMI------RVLAAERNLDA 221
            + +  +    K D                     VF +++ +      R+   +  LDA
Sbjct: 136 SIVRCSQEFVGKSDDGVLFGILFDGYIAKEYIEEAVFVFSSSMGLELVPRLSRCKVLLDA 195

Query: 222 CLR---------VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE-LFREMKE----- 266
            LR         V++ M +  V  DV  Y  LI+  C+ G V  G + LF+  KE     
Sbjct: 196 LLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTAT 255

Query: 267 ---------------NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
                           G++  +  Y VLI+GL    ++  A  LL ++   G   D   Y
Sbjct: 256 LNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTY 315

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV-CC----AEMGRMDNFFKLL 366
           + +I GL + +  D A  L    V   +      + P +  CC    ++ G M+    L 
Sbjct: 316 SLLIDGLLKGRNADAAKGLVHEMVSHGI-----NIKPYMYDCCICVMSKEGVMEKAKALF 370

Query: 367 AQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP-IYNILMGALL 423
             M  +   +    + +   + G  +E+ +    ++  E+K +     P  Y  ++  + 
Sbjct: 371 DGM--IASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMC 428

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
             G++  A  +  +M       N + ++  I+  +++    +A     ++ E    P + 
Sbjct: 429 SSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIF 488

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            YN L  GL K   +D A   + + + N    P  F Y   I     + E     + + E
Sbjct: 489 CYNSLIIGLSKAKRMDEARSFLVEMVEN-GLKPNAFTYGAFISGYIEASEFASADKYVKE 547

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           M + G  PN+V+C+ +I+  CK G + EA   + ++ ++ +L +A T
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKT 594


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 192/405 (47%), Gaps = 18/405 (4%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           + G + +  +YN++      N + R+ D            +  L++L KM     K DVF
Sbjct: 186 ENGCQPDVVTYNSIV-----NGICRSGDT-----------SLALDLLRKMEERNVKADVF 229

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y+ +I  L  +  +DA + +++EM+   +++ V+ Y +L+ GLCK G+   G  L ++M
Sbjct: 230 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM 289

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
               I+ +   + VL++  V EGK+ +A +L K+++  G   ++  YN+++ G C   + 
Sbjct: 290 VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 349

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +A  + ++ V++  +PD  T   L+     + R+D+  K+   + K      A      
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSIL 409

Query: 385 EFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
                +  +I +A ++F+E+   G    V  Y IL+  L + G+++KAL +F  ++   +
Sbjct: 410 VQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 469

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
           ++  + ++  I+   + G + +A      +      P+V  Y  +  GLCK G +  A +
Sbjct: 470 DLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 529

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
           L+R  +    + P +  Y   I    R G+     +++ EM   G
Sbjct: 530 LLRK-MEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 189/406 (46%), Gaps = 8/406 (1%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PD   +  +I+ L  E  +   + + + M ++  + DV+ Y +++ G+C+ G      +
Sbjct: 155 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALD 214

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L R+M+E  +  D   Y  +I+ L  +G +  A  L K++   G ++ +  YNS++ GLC
Sbjct: 215 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 274

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +  +++    L +  V  ++ P+  T N LL    + G++    +L  +M  +   ++ +
Sbjct: 275 KAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEM--ITRGISPN 332

Query: 380 LEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFG 436
           +  +   + G   + R+  A ++ + + + K    +  +  L+     +  V   + +F 
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 392

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            +    L  N++++SI +Q   +SG I  A E   +++    +P V  Y  L  GLC  G
Sbjct: 393 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           +++ A+ +  D L           Y   I  +C+ G+ E    +   +  +G  PN +  
Sbjct: 453 KLEKALEIFED-LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 511

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
           + +ISG+CK G+L EA  +   + E       N   Y+ ++  H++
Sbjct: 512 TVMISGLCKKGSLSEANILLRKMEEDG--NAPNDCTYNTLIRAHLR 555



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 205/437 (46%), Gaps = 11/437 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+++E + ++++M  N C+PDV  Y +++  +    +    L +  +M++  V+ADV  
Sbjct: 171 EGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFT 230

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I  LC+ G +     LF+EM+  GI      Y  L+ GL   GK      LLKD+V
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 290

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 ++  +N ++    +  +  +A +L++  +   ++P+  T N L+       R+ 
Sbjct: 291 SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLS 350

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
               +L  M + K S   D+  F   + G    +R+   + VF  +  +G  ++   Y+I
Sbjct: 351 EANNMLDLMVRNKCS--PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSI 408

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+    + G++K A  LF +M    +  + +++ I +    ++G + +A E    + +  
Sbjct: 409 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYALTILHVCRSGEAE 535
               +  Y  + +G+CK G+++ A  L     C G     P    Y + I  +C+ G   
Sbjct: 469 MDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKG---VKPNVMTYTVMISGLCKKGSLS 525

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI-VYD 594
           +   +L +M ++G  PN+   + +I    + G L  + K+   ++      +A++I +  
Sbjct: 526 EANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVI 585

Query: 595 EILIEHMKKKTADLVLS 611
           ++L+  MK+ T    LS
Sbjct: 586 DMLLSAMKRLTLRYCLS 602



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 196/422 (46%), Gaps = 11/422 (2%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + + + ++M R+   P +  ++     +A  +  +  L   ++++ + +  ++     +I
Sbjct: 71  DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 130

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              C+  +    + +  ++ + G   D   +  LI+GL  EGKV +A  L+  +V++G +
Sbjct: 131 NCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQ 190

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  YNSI+ G+CR      A  L     + ++  D  T + ++      G +D    L
Sbjct: 191 PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 250

Query: 366 LAQMEK--LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALL 423
             +ME   +K SV          L    +    AL + + +  +   +V  +N+L+   +
Sbjct: 251 FKEMETKGIKSSVVT-YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 309

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G++++A  L+ +M    +  N ++++  +  +     + EA    + ++     P + 
Sbjct: 310 KEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIV 369

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDC--LGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
            +  L KG C +  +D  M + R+    G VA+  T   Y++ +   C+SG+ +   E+ 
Sbjct: 370 TFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVT---YSILVQGFCQSGKIKLAEELF 426

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
            EM   G  P+ +    ++ G+C +G LE+A ++F +L++ K+  +   ++Y  I IE M
Sbjct: 427 QEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM--DLGIVMYTTI-IEGM 483

Query: 602 KK 603
            K
Sbjct: 484 CK 485



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/354 (20%), Positives = 142/354 (40%), Gaps = 25/354 (7%)

Query: 229 MKKDLVEADVMAYVTLIMGLCKG--GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
           +K   +  D++  ++     C+     +  G+  FRE   +GI+               +
Sbjct: 22  LKTGSLRTDLLCTISSFFSSCERDFSSISNGNVCFRERLRSGIV---------------D 66

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
            K   A  L ++++ S     L  ++     + R KQF+      +    + +A +  T+
Sbjct: 67  IKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTL 126

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL 404
           N ++ C     +    + +L ++ KL +    D   F   + G   E ++  A+ + + +
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYE--PDTTTFNTLIKGLFLEGKVSEAVVLVDRM 184

Query: 405 KGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
              G    V  YN ++  +   G+   AL L  KM   N++ +  ++S  I      G I
Sbjct: 185 VENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCI 244

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN-VASGPTEFKYA 522
             A     ++       SV  YN L +GLCK G+ +   +L++D +   +      F   
Sbjct: 245 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 304

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           L +    + G+ ++  E+  EM   G  PN +  + ++ G C    L EA  + 
Sbjct: 305 LDVF--VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 132/551 (23%), Positives = 238/551 (43%), Gaps = 80/551 (14%)

Query: 119 PDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV--PE 176
           P  VA VLK + +P  A + F+   ++ G+KH+  +Y  +   L  +  F A + V    
Sbjct: 7   PKHVAAVLKQQKDPLKALEMFNKVKREDGFKHSLLTYKCIIQKLGFHGNFVAMENVLAET 66

Query: 177 LMD------------------SQGRIAEMLEILEKMRRNLCKP----------------- 201
            MD                   +G++ E +++ E+M    C+P                 
Sbjct: 67  RMDIDNSLLEGVYIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGY 126

Query: 202 ------------------DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
                             DV+ +T  I+     +   + LR+   M     + + +AY T
Sbjct: 127 FKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCT 186

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           ++ G  +    V  +ELF +M   GI  D + +  L+  L  +G+V ++  LL  ++  G
Sbjct: 187 VVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKG 246

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
             ++L  +N  I GLCR      A  + +  +++ L PD  T N L+  C  + +  N  
Sbjct: 247 MCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLI--CG-LCKNSNVV 303

Query: 364 KLLAQMEKLKFSVAADLEK---FFEFLVGKEERIMMALDVFEELKG---KGYSSVP---I 414
           +    + KL   V   LE     +  L+    ++ M  +  + L+G   KG+  VP    
Sbjct: 304 EAEKYLHKL---VNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGF--VPDEFT 358

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y  L+  L +  E+ +AL LF    G  L+   + +++ I+   + G IL+A +  N++ 
Sbjct: 359 YCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMS 418

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSG 532
           E      +  YN +  GLCK+G +  A  L+ D    +A G  P  F +   I   C+  
Sbjct: 419 ENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDA---IAKGYVPDVFTFNTLIDGYCKQL 475

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           + E  I++LN+M   G  P+ +  +++++G+ K    E+  + F  + E+  +   N I 
Sbjct: 476 KMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCV--PNKIT 533

Query: 593 YDEILIEHMKK 603
           Y+ IL E + K
Sbjct: 534 YN-ILTESLCK 543



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 176/409 (43%), Gaps = 49/409 (11%)

Query: 181 QGRIAEMLEILEK-MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +G + E   +L K +++ +C  ++F +   I+ L  +  L   + + + + ++ +  DV+
Sbjct: 229 KGEVQESERLLNKVLKKGMC-SNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVV 287

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TLI GLCK   VV   +   ++   G+  D   Y  LI+G    G +  A  +L+  
Sbjct: 288 TYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGA 347

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G+  D   Y S+I GLC+  + D+A  LF   +   L P     N L+         
Sbjct: 348 ICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLI--------- 398

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS-VPIYNIL 418
               K L Q                      E  I+ AL +  E+   G SS +  YN++
Sbjct: 399 ----KGLCQ----------------------EGLILQALQMMNEMSENGCSSDIWTYNLV 432

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L ++G V  A  L           +  +F+  I  + +   +    +  NK+     
Sbjct: 433 INGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGV 492

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            P V  YN +  GL K  + +  M     M+ + C+      P +  Y +    +C++G+
Sbjct: 493 TPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCV------PNKITYNILTESLCKAGK 546

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             + +++++E+  +G  P+ V  + IISG   +G L+ A ++F  + E+
Sbjct: 547 VNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQ 595



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 171/397 (43%), Gaps = 46/397 (11%)

Query: 187 MLEILEKMRRN-LCK---PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ML+  EK+ +  +CK   PD F Y ++I  L     +D  L ++       ++  V+ Y 
Sbjct: 336 MLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYN 395

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI GLC+ G +++  ++  EM ENG   D   Y ++I GL   G V  A +L+ D +  
Sbjct: 396 MLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAK 455

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           GY  D+  +N++I G C+  + +   ++        + PD  T N               
Sbjct: 456 GYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYN--------------- 500

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYNILM 419
                       SV   L K       K E +M   + FE +  KG   VP    YNIL 
Sbjct: 501 ------------SVLNGLSKAV-----KNEDLM---ETFETMVEKG--CVPNKITYNILT 538

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            +L + G+V +AL L  ++    +  +++SF+  I     +GD+  A +   ++ E  +V
Sbjct: 539 ESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKV 598

Query: 480 P-SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
             + A YN +     +  ++     L  + +G     P  + Y + I   C +G  +   
Sbjct: 599 SHTTATYNIMINAFAEKLDLHMGEKLFLE-MGAGGCAPDTYTYRVMIDGFCITGNTDSGY 657

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           + L EM ++G  P+      +I+ +C    + EA  +
Sbjct: 658 KFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDI 694


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 185/409 (45%), Gaps = 37/409 (9%)

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           + Y   I V++ E  ++    +++ M    +     AY +LI G C+   V +G+EL  E
Sbjct: 348 YMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVE 407

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           MK+  I+I    YG +++G+   G +  A +++K+++ SG R ++ IY ++I    +  +
Sbjct: 408 MKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSR 467

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKLK---FSVAA 378
           F  A ++ +   +  +APD    N L++  ++  RMD     L +M    LK   F+  A
Sbjct: 468 FGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGA 527

Query: 379 DLEKFFE------------------------FLVG------KEERIMMALDVFEELKGKG 408
            +  + E                           G      K+E+++ A   +  +  +G
Sbjct: 528 FISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQG 587

Query: 409 -YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
                  Y +LM  L +  +V  A  +F +MRG  +  +  S+ + I    + G++ +A 
Sbjct: 588 ILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKAS 647

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
              ++++E    P+V  YN L  G C+ GEI+ A  L+ D +      P    Y   I  
Sbjct: 648 SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELL-DEMSVKGLHPNAVTYCTIIDG 706

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
            C+SG+  +   + +EM  +G  P+  + + ++ G C+   +E A  +F
Sbjct: 707 YCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF 755



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 128/533 (24%), Positives = 223/533 (41%), Gaps = 76/533 (14%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEM 187
           G + N   Y  L     +N+ F  A +V + M  QG                   R+ E 
Sbjct: 447 GCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEA 506

Query: 188 LEILEKMRRNLCKPDVFAYTAMI---------------------------RVLAA----- 215
              L +M  N  KP+ F Y A I                           +VL       
Sbjct: 507 RSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINE 566

Query: 216 ----ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
               E+ ++AC   +  M    +  D   Y  L+ GL K  +V    E+FREM+  GI  
Sbjct: 567 YCKKEKVIEAC-SAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAP 625

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           D   YGVLI G    G + KA  +  ++V+ G   ++ IYN ++GG CR  + +KA +L 
Sbjct: 626 DVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELL 685

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG-- 389
           +      L P+  T   ++    + G +   F+L  +M KLK  +  D   +   + G  
Sbjct: 686 DEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEM-KLK-GLVPDSFVYTTLVDGCC 743

Query: 390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV---- 445
           +   +  A+ +F   K    SS   +N L+  + + G+ +    +  ++   + +     
Sbjct: 744 RLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKP 803

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N ++++I I    + G++  A E  +++   + +P+V  Y  L  G  K+G   A M  V
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGR-RAEMFPV 862

Query: 506 RDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEM-----TQEGCPPNEVICSA 558
            D    +A+G  P    Y++ I    + G   K + ++++M       +GC  +   C A
Sbjct: 863 FD--EAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRA 920

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIV--YDEILIEHMKKKTADLV 609
           ++SG  K G +E A KV  N+   + + ++ T++   +E  I   ++  AD V
Sbjct: 921 LLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQRVEADAV 973



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 107/470 (22%), Positives = 190/470 (40%), Gaps = 52/470 (11%)

Query: 198 LCK---PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
           +CK   P  + Y  +I  L   + L+    +  EM    V  D   Y  LI GL KG   
Sbjct: 269 ICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNA 328

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
                L  EM  +GI I   +Y   I  +  EG + KA  L   ++ SG       Y S+
Sbjct: 329 DAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASL 388

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKL 372
           I G CR K   + Y+L     + ++     T   ++      G +D  + ++ +M     
Sbjct: 389 IEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGC 448

Query: 373 KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKA 431
           + +V         FL  +  R   A+ V +E+K +G +  +  YN L+  L +   + +A
Sbjct: 449 RPNVVIYTTLIKTFL--QNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEA 506

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGD----------------------------- 462
                +M    L+ N+ ++   I  ++E+ +                             
Sbjct: 507 RSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINE 566

Query: 463 ------ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
                 ++EAC  +  +++   +     Y  L  GL K  ++D A  + R+  G     P
Sbjct: 567 YCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK-GIAP 625

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
             F Y + I    + G  +K   + +EM +EG  PN +I + ++ G C+ G +E+A+++ 
Sbjct: 626 DVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELL 685

Query: 577 TNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKG 626
             +  + L    N + Y  I+  +   K+ DL     + F L  ++K KG
Sbjct: 686 DEMSVKGL--HPNAVTYCTIIDGYC--KSGDLA----EAFRLFDEMKLKG 727



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 125/587 (21%), Positives = 233/587 (39%), Gaps = 83/587 (14%)

Query: 78  TFQLQRHLSPIARFITDAFRK-----NQFQWGPQVVTELSKLRRVTPDLVAEVLKVE--N 130
            F L R  S     ++DA  +      Q  W   +V+    +  + P++V  VL+ +  +
Sbjct: 17  NFLLFRSFSVNVEKLSDASAEIAGILKQENWRDTLVSSNLSIE-INPEVVLSVLRSKRVD 75

Query: 131 NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE-LMDSQGRIAEMLE 189
           +P+    FF+W   QK  +    S++ LA  L     F  A  V E +++    +AE+  
Sbjct: 76  DPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNWPVAEVWS 135

Query: 190 ILEKMRRNLC-KPD---------------------VFAYTAMI------RVLAAERNLDA 221
            + +  +    K D                     VF +++ +      R+   +  LDA
Sbjct: 136 SIVRCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDA 195

Query: 222 CLR---------VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE-LFREMKE----- 266
            LR         V++ M +  V  DV  Y  LI+  C+ G V  G + LF+  KE     
Sbjct: 196 LLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTAT 255

Query: 267 ---------------NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
                           G++  +  Y VLI+GL    ++  A  LL ++   G   D   Y
Sbjct: 256 LNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTY 315

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV-CC----AEMGRMDNFFKLL 366
           + +I GL + +  D A  L    V   +      + P +  CC    ++ G M+    L 
Sbjct: 316 SLLIDGLLKGRNADAAKGLVHEMVSHGI-----NIKPYMYDCCICVMSKEGVMEKAKALF 370

Query: 367 AQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP-IYNILMGALL 423
             M  +   +    + +   + G  +E+ +    ++  E+K +     P  Y  ++  + 
Sbjct: 371 DGM--IASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMC 428

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
             G++  A  +  +M       N + ++  I+  +++    +A     ++ E    P + 
Sbjct: 429 SSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIF 488

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            YN L  GL K   +D A   + + + N    P  F Y   I     + E     + + E
Sbjct: 489 CYNSLIIGLSKAKRMDEARSFLVEMVEN-GLKPNAFTYGAFISGYIEASEFASADKYVKE 547

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           M + G  PN+V+C+ +I+  CK   + EA   + ++ ++ +L +A T
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKT 594


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 194/424 (45%), Gaps = 17/424 (4%)

Query: 183 RIAEMLEILEKMRR--NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           R  E L+++++M +    C PDV ++  +I     +  +     +  EM +  VE DV+ 
Sbjct: 242 RSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVT 301

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +++  LCK   + +   + R+M + G+  D   Y  +I G    G   ++  + + + 
Sbjct: 302 YNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMT 361

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR-- 358
             G    +  +NS +  LC+  +   A ++F+        PD  + + LL   A  GR  
Sbjct: 362 SKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFA 421

Query: 359 -MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPI 414
            M+N F  +A        + A+   F   +    +R MM  A+ VF E++G+G    V  
Sbjct: 422 DMNNLFHSMADK-----GIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVT 476

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y+ L+ A   +G +  A+  F +M  + LE N++ +   I      GD+++A E  ++++
Sbjct: 477 YSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMM 536

Query: 475 EMS-QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
                 P++  ++ +   LC  G +  A   V + + ++   PT   +   I   C  G+
Sbjct: 537 SKGIPRPNIVFFSSIIHSLCNEGRVMDAHD-VFNLVIHIGDRPTIVTFNSLIDGYCLVGK 595

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
            EK   VL+ M   G  P+ V  + ++SG CK G +++   +F  +  +K+  +  T+ Y
Sbjct: 596 MEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKV--KPTTVTY 653

Query: 594 DEIL 597
             +L
Sbjct: 654 SIVL 657



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 98/453 (21%), Positives = 192/453 (42%), Gaps = 15/453 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG +++   ++ +M +   +PDV  Y +++  L   R +D    V  +M    VE D + 
Sbjct: 277 QGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLT 336

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G    G      ++FR+M   G++     +   +  L   G+   A ++ + + 
Sbjct: 337 YTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMT 396

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G+  DL  Y+ ++ G     +F     LF       +  +    N L+   A+ G MD
Sbjct: 397 TKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMD 456

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
               +  +M+     V  D+  +   +    +  R+  A++ F ++   G   +  +Y+ 
Sbjct: 457 EAMLVFTEMQGQ--GVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHS 514

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNL-EVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           L+      G++ KA  L  +M    +   N + FS  I      G +++A +  N +I +
Sbjct: 515 LIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHI 574

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P++  +N L  G C +G+++ A   V D + +V   P    Y   +   C+SG+ + 
Sbjct: 575 GDRPTIVTFNSLIDGYCLVGKMEKAFG-VLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDD 633

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
            + +  EM  +   P  V  S ++ G+   G    A+K+F  + +     + +T    +I
Sbjct: 634 GLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTY---KI 690

Query: 597 LIEHMKKKTADLVLSGLKFFGLESKLKAKGCKL 629
           L++ + +   DL    +  F    KL A  CK 
Sbjct: 691 LLKGLCRN--DLTDEAITLF---HKLGAMDCKF 718



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 106/462 (22%), Positives = 194/462 (41%), Gaps = 53/462 (11%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++GR A+M  +   M       +   +  +I   A    +D  + V+ EM+   V  DV+
Sbjct: 416 TEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVV 475

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TLI   C+ GR+    E F +M   G+  +  +Y  LI G    G + KA +L+ ++
Sbjct: 476 TYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEM 535

Query: 300 VDSGY-RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +  G  R ++  ++SII  LC   +   A+ +F + +     P   T N L+     +G+
Sbjct: 536 MSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGK 595

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL 418
           M+  F +L  M                  VG E  ++                   YN L
Sbjct: 596 MEKAFGVLDAMVS----------------VGIEPDVV------------------TYNTL 621

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G++   L LF +M    ++  ++++SI +     +G    A +  +++I+   
Sbjct: 622 VSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGT 681

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG-----E 533
              +  Y  L KGLC+    D A+ L          G  + K+ +TIL+   +       
Sbjct: 682 AVDIDTYKILLKGLCRNDLTDEAITLFHKL------GAMDCKFDITILNTVINALYKVRR 735

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
            E+  ++   ++  G  PN      +I  + K G++EEA  +F+++ E+     ++ ++ 
Sbjct: 736 REEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSM-EKSGCAPSSRLLN 794

Query: 594 DEILIEHMKKKTADLVLSGL---KFFGLESKLKAKGCKLLSS 632
           D   I  M  +  D+V +G    K  G    L+A    LL S
Sbjct: 795 D---IIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMS 833



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 145/332 (43%), Gaps = 25/332 (7%)

Query: 147 GYKHNFASYNAL--AYCLSRNNLFRAADQVPELMD-------------------SQGRIA 185
           G + N   Y++L   +C+   +L +A + V E+M                    ++GR+ 
Sbjct: 504 GLEPNTVVYHSLIHGFCM-HGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVM 562

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           +  ++   +     +P +  + ++I        ++    V + M    +E DV+ Y TL+
Sbjct: 563 DAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLV 622

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G CK G++  G  LFREM    +      Y ++++GL   G+   A  +  +++DSG  
Sbjct: 623 SGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTA 682

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  Y  ++ GLCR    D+A  LF      D   D + +N ++    ++ R +    L
Sbjct: 683 VDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDL 742

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
            A +                  + KE  +  A  +F  ++  G + S  + N ++  LL+
Sbjct: 743 FAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQ 802

Query: 425 IGEVKKALYLFGKMRG--LNLEVNSLSFSIAI 454
            G++ KA Y   K+ G  ++LE ++ S  +++
Sbjct: 803 KGDIVKAGYYMSKVDGTIISLEASTTSLLMSL 834


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 197/454 (43%), Gaps = 56/454 (12%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           RI + L +   M  + CK D+ AY  +I VL  +           EM  + +  +V+ Y 
Sbjct: 314 RIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYT 373

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           ++I G CK G+V    E+FR M+  G   +   Y  LI GL+ + K+ KA  L+  + + 
Sbjct: 374 SIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQED 433

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G    +  Y ++I G C+  +FD A++LFE+  Q+ L PD    N L     + GR +  
Sbjct: 434 GITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEA 493

Query: 363 FKLLAQMEKL--KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
           +  L +   +  K +  + ++ F +        +++   V E  K   Y+    Y++L+ 
Sbjct: 494 YSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYT----YSVLLQ 549

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           AL +  ++ +AL +  +M    ++ N ++++I I   ++ G    A    N++I     P
Sbjct: 550 ALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKP 609

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLV----RDCLG-------------------------- 510
           S   Y       CKIG+I+ A  L+    RD +                           
Sbjct: 610 SATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTL 669

Query: 511 ----NVASGPTEFKYALTILH-----------VCRSG-----EAEKIIEVLNEMTQEGCP 550
               + +  P  + Y + + H           V  SG     E + + ++L  M + G  
Sbjct: 670 KRMIDASCEPNYWTYWILLKHFLKMSLVDAHYVDTSGMWNWIELDTVWQLLERMVKHGLN 729

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           P  V  S+II+G CK   LEEA  +F ++R + +
Sbjct: 730 PTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDI 763



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 134/591 (22%), Positives = 233/591 (39%), Gaps = 85/591 (14%)

Query: 105 PQVVTELSKL------------RRVTPDL----VAEVLKVEN---NPTLASKFFHWAGKQ 145
           P +V EL ++            +R+ P +    VA++ +      +P  A  FF W  ++
Sbjct: 22  PDIVAELGRVISTRRWNKGRAYKRLAPSVTAAHVADLFRAPVAPLDPATALAFFEWVARR 81

Query: 146 KGYKHNFASYNALAYCLSR---------------------NNLFRAADQVPELMDSQGRI 184
            G++H  AS+ AL   L+R                      ++  A D +  +    G +
Sbjct: 82  PGFRHTAASHAALLQLLARRRAPANYDKLVVSMVSCSDTAEDMREAVDAIQAIRRVGGDL 141

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            +   +L  M    C+ + ++YT +I+ L   R +   L +   M +D    ++  Y  L
Sbjct: 142 RKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTLL 201

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLCK GR+     +  EM   G++     Y  +I+G    G++  A  +   +  +G 
Sbjct: 202 IKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGC 261

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D   YN +I GLC  K  D+A +L    +     P   T   ++    +  R+D+  +
Sbjct: 262 NPDDWTYNILIYGLCGEKP-DEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALR 320

Query: 365 LLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
           +   M  L  +   DL+ +   +  + K+ R   A +   E+   G + +V IY  ++  
Sbjct: 321 VKTSM--LSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDG 378

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
             ++G+V  AL +F  M       N+ ++S  I   ++   + +A     K+ E    P 
Sbjct: 379 YCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPG 438

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V  Y  L +G CK  E D A  L  + +      P E  Y +    +C+SG AE+    L
Sbjct: 439 VITYTTLIQGQCKKHEFDNAFRLF-EMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSFL 497

Query: 542 --------------------------------NEMTQEGCPPNEVICSAIISGMCKHGTL 569
                                            +M  EGC  +    S ++  +CK   L
Sbjct: 498 VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKL 557

Query: 570 EEARKVF--TNLRERKLLTEANTIVYDEILIE----HMKKKTADLVLSGLK 614
            EA  +     L   K    A TI+  E++ E    H K    +++ SG K
Sbjct: 558 NEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHK 608



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 153/361 (42%), Gaps = 20/361 (5%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           ++EKM    CK D + Y+ +++ L  ++ L+  L + ++M    V+ +++AY  +I  + 
Sbjct: 528 LIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMI 587

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K G+      +F EM  +G       Y V I      G++ +A  L+ ++   G   D+ 
Sbjct: 588 KEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVV 647

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            YN  I G   +   D+A+   +  +     P++ T   LL    +M  +D  +   + M
Sbjct: 648 TYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSLVDAHYVDTSGM 707

Query: 370 EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEV 428
                    +L+  ++ L              E +   G +   + Y+ ++    +   +
Sbjct: 708 WNW-----IELDTVWQLL--------------ERMVKHGLNPTAVTYSSIIAGFCKATRL 748

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
           ++A  LF  MRG ++  N   +++ I+C  +     +A      +IE    P + +Y+ L
Sbjct: 749 EEACVLFDHMRGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLESYHYL 808

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
             GLC  G+ D A  L  D LG       E  + +    + ++G  +   ++L+ M    
Sbjct: 809 IVGLCDEGDYDKAKSLFCDLLGMEDYNHNEVAWKILNDGLLKAGHVDFCSQLLSAMENRH 868

Query: 549 C 549
           C
Sbjct: 869 C 869



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 131/340 (38%), Gaps = 58/340 (17%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q ++ E L IL++M  +  K ++ AYT +I  +  E   D    ++ EM     +     
Sbjct: 554 QKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATT 613

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK--- 297
           Y   I   CK G++     L  EM+ +G+  D   Y V I G    G + +A   LK   
Sbjct: 614 YTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMI 673

Query: 298 ---------------------DLVDSGYRADLGIYN------------------------ 312
                                 LVD+ Y    G++N                        
Sbjct: 674 DASCEPNYWTYWILLKHFLKMSLVDAHYVDTSGMWNWIELDTVWQLLERMVKHGLNPTAV 733

Query: 313 ---SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
              SII G C+  + ++A  LF+     D++P+      L+ CC ++         +  M
Sbjct: 734 TYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDM 793

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKG-KGYSSVPI-YNILMGALLEI 425
             ++F     LE +   +VG   E     A  +F +L G + Y+   + + IL   LL+ 
Sbjct: 794 --IEFGFQPHLESYHYLIVGLCDEGDYDKAKSLFCDLLGMEDYNHNEVAWKILNDGLLKA 851

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAI-QCHVESGDIL 464
           G V     L   M   + +++S ++S+     H  SG ++
Sbjct: 852 GHVDFCSQLLSAMENRHCQIDSETYSMVTDNIHEASGSVV 891


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/516 (21%), Positives = 216/516 (41%), Gaps = 55/516 (10%)

Query: 144 KQKGYKHNFASYNALAYCLSRNN-------LFRAA---DQVP----------ELMDSQGR 183
           ++ G + +F SYN +   L+R +       L+R     D+VP            +   GR
Sbjct: 131 RRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGR 190

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
             E L +L  M R+ C PD   Y  +I  L  +  +     +  EM      ADV  +  
Sbjct: 191 ADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDD 250

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL-------------------- 283
           ++ G+C  GRV     L   M   G +     YG L++GL                    
Sbjct: 251 VVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELN 310

Query: 284 -----------VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
                      + EGK+ +A +L + +   G + D   Y+ ++ GLC++ +   A +L  
Sbjct: 311 VVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLR 370

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392
              +   AP+  T   +L    + G  D+   LL +M     ++ +       + + K+ 
Sbjct: 371 EMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDG 430

Query: 393 RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
           R+  A+ + +E++ +G +  +  YN ++  L    ++++A ++F  +    +  N ++++
Sbjct: 431 RMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYN 490

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
             I   +  G   +A     ++I       V +YN L K +CK G +D +++L+ + +  
Sbjct: 491 TIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE-MAE 549

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
               P    Y + I  +C+       +E+  +M  +G  P+ V  + +I+G+CK G +  
Sbjct: 550 KGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHA 609

Query: 572 ARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           A  +   L    +    + I Y+ ++  H K +  D
Sbjct: 610 ALNLLEKLHNENV--HPDIITYNILISWHCKVRLLD 643



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 164/371 (44%), Gaps = 35/371 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G++AE  E+ E M    C+PD   Y+ ++  L     + + +R+  EM+K     +V+
Sbjct: 323 AEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVV 382

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  ++   CK G       L  EM   G+ ++   Y  +I  L  +G++ +A  L++++
Sbjct: 383 TYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEM 442

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   D+  YN+II  LC  +Q ++A  +FE  +++ +  +  T N ++      GR 
Sbjct: 443 RSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRW 502

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
            +  +L  +M                 L G       +LDV              YN L+
Sbjct: 503 QDAVRLAKEM----------------ILHG------CSLDVVS------------YNGLI 528

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            A+ + G V ++L L  +M    ++ N++S++I I    +   + +A E   +++     
Sbjct: 529 KAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLA 588

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P +  YN L  GLCK+G + AA+ L+   L N    P    Y + I   C+    +    
Sbjct: 589 PDIVTYNTLINGLCKMGWMHAALNLLEK-LHNENVHPDIITYNILISWHCKVRLLDDAAM 647

Query: 540 VLNEMTQEGCP 550
           +LN      CP
Sbjct: 648 LLNRAMAAVCP 658



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 177/416 (42%), Gaps = 9/416 (2%)

Query: 158 LAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER 217
           L  C +  N F   D V   M   GR+ E   ++++M    C P V  Y  +++ L   R
Sbjct: 238 LMGCAADVNTF---DDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVR 294

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
             D        M   + E +V+ + T+I G    G++    EL+  M   G   D   Y 
Sbjct: 295 QADEA----RAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYS 350

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           +L+ GL   G++G A  LL+++   G+  ++  Y  ++   C+   +D    L E     
Sbjct: 351 ILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAK 410

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA 397
            L  +    N ++    + GRMD    L+ +M     +          + +   E++  A
Sbjct: 411 GLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEA 470

Query: 398 LDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
             +FE L  +G  +  I YN ++ ALL  G  + A+ L  +M      ++ +S++  I+ 
Sbjct: 471 EHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKA 530

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
             + G++  +     ++ E    P+  +YN L   LCK   +  A+ L +  L N    P
Sbjct: 531 MCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQML-NQGLAP 589

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
               Y   I  +C+ G     + +L ++  E   P+ +  + +IS  CK   L++A
Sbjct: 590 DIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDA 645



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 88/230 (38%), Gaps = 41/230 (17%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPE-------------------LMDSQGRIA 185
           ++G   N  +YN + + L R+  ++ A ++ +                    M   G + 
Sbjct: 479 EEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVD 538

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
             L +LE+M     KP+  +Y  +I  L  ER +   L + ++M    +  D++ Y TLI
Sbjct: 539 RSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLI 598

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLCK G +     L  ++    +  D   Y +LI        +  A  LL         
Sbjct: 599 NGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLL--------- 649

Query: 306 ADLGIYNSIIGGLC-----RVKQF--DKAYKLFEVTVQDDLAPDFSTVNP 348
                 N  +  +C     R+ Q   DK +KL+  T  DD       V P
Sbjct: 650 ------NRAMAAVCPVGDRRIMQILPDKNFKLYLHTKGDDFQHSLGCVKP 693


>gi|302757477|ref|XP_002962162.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
 gi|300170821|gb|EFJ37422.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
          Length = 484

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 112/468 (23%), Positives = 195/468 (41%), Gaps = 63/468 (13%)

Query: 119 PDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM 178
           P LV  V++   +  LA KFF W+ KQ+GY+H+   Y  L + L R              
Sbjct: 11  PRLVGSVIRRVPSLALARKFFDWSSKQEGYRHDVYCYTRLLHHLVRAR------------ 58

Query: 179 DSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
               R  E +   ++     C+P ++++T +I+     RN     R    M+   +  DV
Sbjct: 59  ----RTREAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDV 114

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
            AY  ++ G C  GRV R                          L+  GK+GK C     
Sbjct: 115 TAYNVVLKGYCDLGRVGR-------------------------ALIKFGKMGKTC----- 144

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
                 + ++  YN++I GLC+  + D A  LF     D + PD  T + L+    +  R
Sbjct: 145 ------KPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAER 198

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNI 417
           ++   K+   M +  +   A           KE R+  AL+V + +  +G   SV  YN 
Sbjct: 199 LEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRGCKPSVVTYNC 258

Query: 418 LMGALLEI-GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           ++  + +    +++A  LF +M G +   N++++   I   +    I E   C      M
Sbjct: 259 IINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMI---LGLSKIYEVQRCLELFKGM 315

Query: 477 SQV---PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           S+    P   AY+ L     K+ ++D A  +++D   N   GP  + Y   I   CR+ +
Sbjct: 316 SKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARN-HVGPDVYMYTTLISGYCRARK 374

Query: 534 --AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
              ++ + +   M      PN +  + ++ G+CK G  +EA ++F  +
Sbjct: 375 PRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEM 422



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/308 (19%), Positives = 132/308 (42%), Gaps = 8/308 (2%)

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           GYR D+  Y  ++  L R ++  +A + F+  +     P   +   ++ C   +      
Sbjct: 39  GYRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRA 98

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGYSSVPIYNILMG 420
           ++ L  M  L   +  D+  +   L G  +  R+  AL  F ++      +V  YN ++ 
Sbjct: 99  WRYLGYMRSL--GIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMGKTCKPNVATYNTVIN 156

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L + G++  A++LF ++    ++ +  ++S  +    ++  +  A + ++ ++E +   
Sbjct: 157 GLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDG 216

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR-SGEAEKIIE 539
              AYN +  G CK   +D A+ +++  +      P+   Y   I  VC+     E+   
Sbjct: 217 DAGAYNAMADGFCKERRVDEALEVLKTMIQR-GCKPSVVTYNCIINGVCQYKNRIEEAYR 275

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           +  +M    CPPN V    +I G+ K   ++   ++F  + +  L    +   Y  ++  
Sbjct: 276 LFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGL--SPDGYAYHSLIYA 333

Query: 600 HMKKKTAD 607
            +K +  D
Sbjct: 334 FVKVRKLD 341



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER--NLDACLRVWEEMKKDLVEADVMA 240
           ++ E   IL+   RN   PDV+ YT +I      R   +D  L +++ MK   V  +V+ 
Sbjct: 339 KLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVIT 398

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  ++ GLCK GR    +++F+EM +     +R  + V+  G++  GK  K   +  D+V
Sbjct: 399 YNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGMIHCGKTDKFERIFMDMV 458

Query: 301 DSG 303
             G
Sbjct: 459 YKG 461


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 108/429 (25%), Positives = 184/429 (42%), Gaps = 22/429 (5%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G   N ASYN + + L +                 GR+ E  ++L +M    C PDV +Y
Sbjct: 248 GVCWNTASYNIITHSLCQ----------------LGRVVEAHQLLLQMELRGCIPDVISY 291

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           + +I        L   L++ EEM+   ++ +   Y  +I+ LCK G+V     + REM  
Sbjct: 292 STVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMIS 351

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            GI  D  IY  LI+G    G V  A  L  ++       D   Y ++I GLC+  +  +
Sbjct: 352 EGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVME 411

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A KLF   V   L PD  T   L+    + G+M   F L  QM  L+  +  ++  +   
Sbjct: 412 ADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQM--LQMGLTPNIVTYTAL 469

Query: 387 LVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
             G  K   +  A ++  E+  KG   ++  YN L+  L + G + +A+ L   M     
Sbjct: 470 ADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGF 529

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             ++++++  +  + +S +++ A E   ++++    P+V  +N L  G C  G ++    
Sbjct: 530 HPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEK 589

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L++  L      P    Y   I   C         E+   M  +G  P+    + +I G 
Sbjct: 590 LLKWMLEK-GIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGH 648

Query: 564 CKHGTLEEA 572
           CK   ++EA
Sbjct: 649 CKARNMKEA 657



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 133/603 (22%), Positives = 258/603 (42%), Gaps = 38/603 (6%)

Query: 13  YFFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSP--PFNVQKWDPHYLPNQKTQ 70
           + ++ H  P+ NR + +   FS + S  +  + + P  SP  P  +Q  +  +  +   +
Sbjct: 16  FSYHSHLDPALNRLSFFRRCFSEKLSSFDSTTRNFPDYSPKKPI-IQDSELVHRISIAIK 74

Query: 71  SPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVT----------ELSKLRRVTPD 120
              S+P    L+R L P        FR +   W    +           E + LRR  P 
Sbjct: 75  QRRSEP----LRRVLKPYE----SKFRADHLIWVLMNIKNDYRLVLSFFEWACLRR-DPS 125

Query: 121 L-----VAEVLKVENNPTLASKFFH--WAGKQKGYKHNFASY-NALAYCL-SRNNLFRAA 171
           L     VA++     +  +A K     W         +F  +   L Y      +  R  
Sbjct: 126 LEARCIVAQIATASKDLKMARKLIQDFWVNPNLDVGVSFGHFVEQLIYTYKDWGSDPRVF 185

Query: 172 DQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN-LDACLRVWEEMK 230
           D   +++   G + E  ++ +KM        V +    I  L+ + + +   L+V+ E  
Sbjct: 186 DIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVEFP 245

Query: 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
           +  V  +  +Y  +   LC+ GRVV  H+L  +M+  G + D   Y  +I G    G++ 
Sbjct: 246 EVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQ 305

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           +   L++++   G + +   YN +I  LC+  +  +A ++    + + +APD      L+
Sbjct: 306 RVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLI 365

Query: 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG 408
               ++G + + ++L  +M+K K  ++ D   +   + G  +  R+M A  +F E+  K 
Sbjct: 366 DGFCKLGNVSSAYRLFDEMQKRK--ISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKR 423

Query: 409 YSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
                + Y  L+    + G++K+A  L  +M  + L  N ++++       + G++  A 
Sbjct: 424 LEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTAN 483

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
           E  +++       ++  YN L  GLCK G ID A+ L++D +      P    Y   +  
Sbjct: 484 ELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKD-MEVAGFHPDAVTYTTLMDA 542

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
            C+S E  +  E+L +M      P  V  + +++G C  G LE+  K+   + E+ ++  
Sbjct: 543 YCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPN 602

Query: 588 ANT 590
           A T
Sbjct: 603 ATT 605



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 147/335 (43%), Gaps = 1/335 (0%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           L+   G++AE   +L +M      PD   YT +I       N+ +  R+++EM+K  +  
Sbjct: 332 LLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISP 391

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D + Y  +I GLC+ GRV+   +LF EM    +  D   Y  LI+G   EGK+ +A  L 
Sbjct: 392 DFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLH 451

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             ++  G   ++  Y ++  GLC+  + D A +L     +  L  +  T N L+    + 
Sbjct: 452 NQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKA 511

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIY 415
           G +D   KL+  ME   F   A           K   ++ A ++  ++  +    +V  +
Sbjct: 512 GNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTF 571

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N+LM      G ++    L   M    +  N+ +++  I+ +    ++    E +  +  
Sbjct: 572 NVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCA 631

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
              VP    YN L KG CK   +  A  L RD +G
Sbjct: 632 KGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVG 666



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 135/310 (43%), Gaps = 9/310 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E  ++  +M     +PD   YTA+I     E  +     +  +M +  +  +++ Y
Sbjct: 407 GRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTY 466

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L  GLCK G V   +EL  EM   G+ ++   Y  L+ GL   G + +A  L+KD+  
Sbjct: 467 TALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEV 526

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G+  D   Y +++   C+ ++  +A++L    +  +L P   T N L+      G +++
Sbjct: 527 AGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLED 586

Query: 362 FFKLLAQM-EKLKFSVAADLEKFF-EFLVGKEERIMMALDVFEELKGKGYSSVP---IYN 416
             KLL  M EK     A        ++ +    R     +++  +  KG   VP    YN
Sbjct: 587 GEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMR--ATTEIYRGMCAKGV--VPDGNTYN 642

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+    +   +K+A +L   M G    +   S++  I+   +    LEA E   ++   
Sbjct: 643 ILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRRE 702

Query: 477 SQVPSVAAYN 486
             V     YN
Sbjct: 703 GLVADREIYN 712



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 21/181 (11%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
             K   W   +KG   N  +YN+L   YC+ RNN+ RA  ++   M ++G +        
Sbjct: 587 GEKLLKWM-LEKGIMPNATTYNSLIKQYCI-RNNM-RATTEIYRGMCAKGVV-------- 635

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
                   PD   Y  +I+     RN+     +  +M        V +Y  LI G  K  
Sbjct: 636 --------PDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRK 687

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
           + +   ELF +M+  G++ DR IY +  +    EGK+    +L  + ++     D+   N
Sbjct: 688 KFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGDIQTKN 747

Query: 313 S 313
           +
Sbjct: 748 T 748


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/451 (23%), Positives = 189/451 (41%), Gaps = 53/451 (11%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K KG K +   YN +   L +N                G + E  ++L  MR+    PD 
Sbjct: 304 KGKGLKPDEYIYNNIILLLCKN----------------GEVVEAEQLLRGMRKWGVFPDN 347

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT +I       N+ A  ++++EM++  +  D++ Y ++I G+CK G++V   E+F E
Sbjct: 348 VVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNE 407

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M   G+  D   Y  LI+G    G++ +A  +   +V  G   ++  Y ++  GLC+  +
Sbjct: 408 MLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGE 467

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            D A +L     +  L P+  T N ++    ++G ++   KL+ +M         DL  F
Sbjct: 468 IDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEM---------DLAGF 518

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
                                    Y     Y  LM A  ++GE+ KA  L   M    L
Sbjct: 519 -------------------------YPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRL 553

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
           +   ++F++ +     SG + +       ++E   +P+   +N L K  C    + A   
Sbjct: 554 QPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTE 613

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           + +  + +    P    Y + I   C++   ++   +  EM ++G         A+I G 
Sbjct: 614 IYK-AMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGF 672

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
            K     EARK+F  +R+  L+ E +  +YD
Sbjct: 673 YKRKKFVEARKLFEEMRKHGLVAEKD--IYD 701



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 187/427 (43%), Gaps = 10/427 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E   +L +M      PDV +Y  ++        LD  L++ +E+K   ++ D   Y
Sbjct: 256 GKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIY 315

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I+ LCK G VV   +L R M++ G+  D  +Y  +I G    G V  AC L  ++  
Sbjct: 316 NNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRR 375

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                D+  Y S+I G+C+  +  +A ++F   +   L PD  T   L+    + G M  
Sbjct: 376 KKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKE 435

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
            F +  QM  ++  +  ++  +     G  K   I +A ++  E+  KG   +V  YN +
Sbjct: 436 AFSVHNQM--VQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTI 493

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L +IG +++ + L  +M       ++++++  +  + + G++ +A E    ++    
Sbjct: 494 VNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRL 553

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILHVCRSGEAEKI 537
            P++  +N L  G C  G ++    L+   L   +    T F   +     C        
Sbjct: 554 QPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMK--QYCIKNNMRAT 611

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            E+   M   G  P+    + +I G CK   ++EA  +   + E+     A T  YD ++
Sbjct: 612 TEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAAT--YDALI 669

Query: 598 IEHMKKK 604
               K+K
Sbjct: 670 RGFYKRK 676



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 174/371 (46%), Gaps = 6/371 (1%)

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
           ++V+EE  +  V  + ++   ++  LC+ G+V   H L  +M + G   D   YGV++ G
Sbjct: 227 VKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSG 286

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
               G++ K   L+ +L   G + D  IYN+II  LC+  +  +A +L     +  + PD
Sbjct: 287 YCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPD 346

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDV 400
                 ++    ++G +    KL  +M + K  +  D+  +   + G  K  +++ A ++
Sbjct: 347 NVVYTTVISGFCKLGNVSAACKLFDEMRRKK--IVPDIVTYTSVIHGICKSGKMVEAREM 404

Query: 401 FEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           F E+  KG     + Y  L+    + GE+K+A  +  +M    L  N ++++       +
Sbjct: 405 FNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCK 464

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           +G+I  A E  +++      P+V  YN +  GLCKIG I+  + L+ + +      P   
Sbjct: 465 NGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEE-MDLAGFYPDTI 523

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            Y   +   C+ GE  K  E+L  M  +   P  V  + +++G C  G LE+  ++   +
Sbjct: 524 TYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWM 583

Query: 580 RERKLLTEANT 590
            E+ ++  A T
Sbjct: 584 LEKGIMPNATT 594



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 9/180 (5%)

Query: 177 LMDSQGRIAEML---EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD+  ++ EM    E+L  M     +P +  +  ++        L+   R+ E M +  
Sbjct: 528 LMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKG 587

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  +   + +L+   C    +    E+++ M + G++ D   Y +LI+G      + +A 
Sbjct: 588 IMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAW 647

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE------VTVQDDLAPDFSTVN 347
            L K++V+ GY      Y+++I G  + K+F +A KLFE      +  + D+   F  VN
Sbjct: 648 FLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVN 707



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 99/211 (46%), Gaps = 44/211 (20%)

Query: 427 EVKKALYLFGKMRGLNLE---VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           +V K+ +LF +M     +    + L F +  Q  VE+G +LEA +  +K++    V SV 
Sbjct: 148 DVSKSFHLFTEMLIYTYKDWGSHPLVFDLYFQVLVENGFVLEAQKLFHKLLRYGVVVSVD 207

Query: 484 AYN-------CLTKG-----------------------------LCKIGEI-DAAMMLVR 506
           + N       C  +G                             LC++G++ +A  +LV+
Sbjct: 208 SCNLFLSRLSCNFEGIKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQ 267

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
             + +  + P    Y + +   CR GE +K++++++E+  +G  P+E I + II  +CK+
Sbjct: 268 --MTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKN 325

Query: 567 GTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           G + EA ++   +R+  +    + +VY  ++
Sbjct: 326 GEVVEAEQLLRGMRKWGVF--PDNVVYTTVI 354



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 20/145 (13%)

Query: 145 QKGYKHNFASYNALA--YCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           +KG   N  ++N+L   YC+ +NN+ RA  ++ + M  +G +                PD
Sbjct: 585 EKGIMPNATTFNSLMKQYCI-KNNM-RATTEIYKAMHDRGVM----------------PD 626

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
              Y  +I+     RN+     + +EM +         Y  LI G  K  + V   +LF 
Sbjct: 627 SNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFE 686

Query: 263 EMKENGILIDRAIYGVLIEGLVGEG 287
           EM+++G++ ++ IY + ++    EG
Sbjct: 687 EMRKHGLVAEKDIYDIFVDVNYEEG 711


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 176/403 (43%), Gaps = 8/403 (1%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           V + +  QG + E   +  +M+   C PDV  Y ++I        L+    +  EM+K  
Sbjct: 205 VIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSG 264

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
             ADV+ Y  LI    K G + + +  F EMK  G++ +       ++    EG V +A 
Sbjct: 265 CAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAM 324

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            L   +   G   +   Y S++ G C+  + D A  L +  V   L P+  T   ++   
Sbjct: 325 KLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGL 384

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFF---EFLVGKEERIMMALDVFEELKGKGYS 410
            + G++     +L+ ME+        L        F+    ER   ALD+  E+K KG  
Sbjct: 385 CKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSER---ALDLLNEMKNKGME 441

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
             V +Y  L+  L ++ ++ +A  L  KM    L  N++ ++  +    ++G   EA   
Sbjct: 442 LDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVAL 501

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
            +KI +    P+V  Y  L  GLCK G I  A+    D +  +   P    Y   I   C
Sbjct: 502 LHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHF-DKMRELGLDPNVQVYTTLIDGFC 560

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           + G   K + ++NEM  +G   ++V+ +++I G  K G L+ A
Sbjct: 561 KIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGA 603



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 95/430 (22%), Positives = 184/430 (42%), Gaps = 39/430 (9%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQ----------------VPELMDS---QGRI 184
           ++ G   +  +YNAL  C S+      A                  +   +D+   +G +
Sbjct: 261 RKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLV 320

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E +++  +MR     P+ F YT+++        LD  + + +EM    +  +V+ Y  +
Sbjct: 321 REAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVM 380

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + GLCK G+V    ++   M+  G+  +  +Y  LI G        +A DLL ++ + G 
Sbjct: 381 VDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGM 440

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+ +Y ++I GLC+V++ D+A  L        L P+      +         MD FFK
Sbjct: 441 ELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTI---------MDAFFK 491

Query: 365 LLAQMEKLKF-------SVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPI 414
              + E +          +  ++  +   + G  K   I  A+  F++++  G   +V +
Sbjct: 492 AGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQV 551

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y  L+    +IG + KA++L  +M    + ++ + ++  I  H++ GD+  A     K+I
Sbjct: 552 YTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMI 611

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           E      +  Y C   G C +  +  A  ++ + +G   + P +  Y   I    + G  
Sbjct: 612 ETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGIT-PDKTAYNCLIRKYQKLGNM 670

Query: 535 EKIIEVLNEM 544
           E+   + NEM
Sbjct: 671 EEASSLQNEM 680



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 97/191 (50%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+ +E + +L K+  +  +P+V  Y A+I  L    ++   +  +++M++  ++ +V  Y
Sbjct: 493 GKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVY 552

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G CK G + +   L  EM + G+ +D+ +Y  LI+G + +G +  A  L   +++
Sbjct: 553 TTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIE 612

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G + DL  Y   I G C +    +A  +    +   + PD +  N L+    ++G M+ 
Sbjct: 613 TGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEE 672

Query: 362 FFKLLAQMEKL 372
              L  +ME +
Sbjct: 673 ASSLQNEMESV 683


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 122/487 (25%), Positives = 216/487 (44%), Gaps = 50/487 (10%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E  E+ ++M+   CKP+   ++A+I       +++    + EEM+K  +E DV  Y 
Sbjct: 179 RLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYS 238

Query: 243 TLIMGLCKGGRVVRGHELFREM-------------------------KENGILIDR---- 273
            LI G C  G + RG ELF EM                         KE   ++D     
Sbjct: 239 ALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGC 298

Query: 274 ------AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
                   Y VL +GL   G+   A  +L  +V  G   +   YN+II GLC+  + D A
Sbjct: 299 KVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDA 358

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
             + E   +    PD  T + L+     +G++D    LL  +   +F +  D+  F   +
Sbjct: 359 LGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVI 418

Query: 388 --VGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
             + K+ R+  A  V+  +  +G+ S++  YNIL+   L  G++ KAL L+       + 
Sbjct: 419 QELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGIS 478

Query: 445 VNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
            N+ ++++ I   C ++   I +     NK       P+V+ YN L   LC+   ++ A 
Sbjct: 479 PNAATYTVLINGLCKMQMLSIAKG--LFNKKRASGTRPTVSEYNTLMASLCRESSVEQAR 536

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            L ++ + N    P    + + I    ++G+ E   E+L EM      P+ +  S +I+ 
Sbjct: 537 NLFQE-MRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINR 595

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFG----- 617
             K G L+EA  ++  +     + +A  +++D +L  +  K   + V+S L+        
Sbjct: 596 FLKLGQLDEAASLYERMVSCGHVPDA--VLFDSLLKGYSLKGKTEKVVSMLQQMADKDVV 653

Query: 618 LESKLKA 624
           L+SKL +
Sbjct: 654 LDSKLTS 660



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 184/405 (45%), Gaps = 8/405 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G   + +++   M+RN   PD  +Y  +I  L   + L     +++EMK    + + + 
Sbjct: 142 SGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVT 201

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  LI G CK G V  G  L  EM++ G+  D  +Y  LI G   +G + +  +L  +++
Sbjct: 202 FSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEML 261

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 ++  Y+ ++  LC+ +++ +A ++ +      + PD      L    ++ GR  
Sbjct: 262 RKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRAS 321

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
           +  K+L  M  +K     +   +   + G  KE R+  AL + E +  KG    V  Y+ 
Sbjct: 322 DAIKVLDLM--VKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYST 379

Query: 418 LMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           L+  L  +G++ +A+ L   +  +  +++ +  +F++ IQ   +   +  A   +  ++E
Sbjct: 380 LVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVE 439

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
                ++  YN L  G    G++  A+ L +D + +  S P    Y + I  +C+     
Sbjct: 440 RGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGIS-PNAATYTVLINGLCKMQMLS 498

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
               + N+    G  P     + +++ +C+  ++E+AR +F  +R
Sbjct: 499 IAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMR 543



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 183/404 (45%), Gaps = 21/404 (5%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +V+ +  +++      +    + ++  MK++ +  D ++Y T+I GLCKG R+V   ELF
Sbjct: 128 NVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELF 187

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           +EMK      +   +  LI+G    G V +   LL+++   G   D+ +Y+++I G C  
Sbjct: 188 KEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSK 247

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
              ++  +LF   ++ ++ P+  T + L+    +  +     ++L  M   K  V  D+ 
Sbjct: 248 GDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCK--VRPDVV 305

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKM 438
            +     G  K  R   A+ V + +  +G     + YN ++  L + G V  AL +   M
Sbjct: 306 AYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETM 365

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII--EMSQVPSVAAYNCLTKGLCKIG 496
                + + +++S  ++     G I EA +  N ++  E    P V A+N + + LCK  
Sbjct: 366 AKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQR 425

Query: 497 EIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
            +  A      M+ R    N+ +      Y + I     +G+  K +E+  +    G  P
Sbjct: 426 RLRHAKRVYYTMVERGFPSNIVT------YNILIDGYLSAGKLTKALELWKDAVDSGISP 479

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLR---ERKLLTEANTIV 592
           N    + +I+G+CK   L  A+ +F   R    R  ++E NT++
Sbjct: 480 NAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLM 523



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 105/505 (20%), Positives = 197/505 (39%), Gaps = 122/505 (24%)

Query: 98  KNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNA 157
           K   + G ++  E+ + + VTP++V             S   +   K++ +K      + 
Sbjct: 247 KGDIERGKELFNEMLR-KNVTPNVVT-----------YSCLMNALCKKQKWKEAAQMLDT 294

Query: 158 LAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER 217
           +  C  R ++  A   + + +   GR ++ +++L+ M +   +P+   Y A+I  L  E 
Sbjct: 295 MTGCKVRPDVV-AYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEG 353

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL----------------- 260
            +D  L + E M K   + DV+ Y TL+ GLC  G++    +L                 
Sbjct: 354 RVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFA 413

Query: 261 --------------------FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
                               +  M E G   +   Y +LI+G +  GK+ KA +L KD V
Sbjct: 414 FNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAV 473

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           DSG   +   Y  +I GLC+++    A  LF         P  S  N L+          
Sbjct: 474 DSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMAS-------- 525

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
                                      + +E  +  A ++F+E++   +   V  +NI++
Sbjct: 526 ---------------------------LCRESSVEQARNLFQEMRNANHDPDVVSFNIII 558

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
              L+ G+V+ A  L  +M  +NL  ++++FSI I   ++ G + EA   + +++    V
Sbjct: 559 DGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHV 618

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P    ++ L KG                             Y+L        G+ EK++ 
Sbjct: 619 PDAVLFDSLLKG-----------------------------YSL-------KGKTEKVVS 642

Query: 540 VLNEMTQEGCPPNEVICSAIISGMC 564
           +L +M  +    +  + S I++ +C
Sbjct: 643 MLQQMADKDVVLDSKLTSTILACLC 667



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 136/308 (44%), Gaps = 43/308 (13%)

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           LIE  V   K   A  +L  ++  G+  ++  +N ++ G C+     KA  LF +  ++ 
Sbjct: 100 LIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNC 159

Query: 339 LAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
           L PD  + N ++  +C                                     K +R++ 
Sbjct: 160 LIPDCVSYNTVINGLC-------------------------------------KGKRLVE 182

Query: 397 ALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A ++F+E+KG       + ++ L+    + G+V++   L  +M  + LE +   +S  I 
Sbjct: 183 AKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALIS 242

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI-DAAMMLVRDCLGNVAS 514
                GDI    E  N+++  +  P+V  Y+CL   LCK  +  +AA ML  D +     
Sbjct: 243 GFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQML--DTMTGCKV 300

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P    Y +    + ++G A   I+VL+ M + G  PN V  +AII+G+CK G +++A  
Sbjct: 301 RPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALG 360

Query: 575 VFTNLRER 582
           +   + ++
Sbjct: 361 ILETMAKK 368



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 90/200 (45%), Gaps = 10/200 (5%)

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKM-----RGLNLEVNSLSFSIAIQCHVESGDIL 464
           S  P +  L   +      +K  + FG +     RG +L V   +F++ ++   +SGD  
Sbjct: 89  SVFPCFTSLSALIESFVNTQKPSFAFGVLGLIMKRGFHLNV--YNFNLLLKGFCQSGDSH 146

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
           +A +    +     +P   +YN +  GLCK   +  A  L ++  G     P    ++  
Sbjct: 147 KAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGG-ECKPNSVTFSAL 205

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           I   C++G+ E+   +L EM + G   +  + SA+ISG C  G +E  +++F  +  + +
Sbjct: 206 IDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNV 265

Query: 585 LTEANTIVYDEILIEHMKKK 604
               N + Y  ++    KK+
Sbjct: 266 --TPNVVTYSCLMNALCKKQ 283



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 128/295 (43%), Gaps = 26/295 (8%)

Query: 111 LSKLRRVTPDLVAEVLKVE----NNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSR 164
           +SK   + PD+ A  L ++          +K  ++   ++G+  N  +YN L   Y LS 
Sbjct: 401 MSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGY-LSA 459

Query: 165 NNLFRAADQVPELMDS-------------QGRIA-EMLEI----LEKMRRNLCKPDVFAY 206
             L +A +   + +DS              G    +ML I      K R +  +P V  Y
Sbjct: 460 GKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEY 519

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             ++  L  E +++    +++EM+    + DV+++  +I G  K G V    EL  EM  
Sbjct: 520 NTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLN 579

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
             ++ D   + +LI   +  G++ +A  L + +V  G+  D  +++S++ G     + +K
Sbjct: 580 MNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEK 639

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
              + +     D+  D    + +L C   M +  +  K+L +  +   SV A ++
Sbjct: 640 VVSMLQQMADKDVVLDSKLTSTILACLCNMSKDVDIEKILPKFSQ-HTSVGASIK 693


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 188/420 (44%), Gaps = 20/420 (4%)

Query: 165 NNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLC---KPDVFAYTAMIRVLAAERNLDA 221
           N L  A  + P     +   A  +E+ ++M R  C    P ++ Y  +I      R  D 
Sbjct: 77  NELLSALARAPPSAACRDVPALAVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDL 136

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
            L V+  + +  +  DV +Y  LI G  K G V + H+LF +M+E GI+ +   Y  LI 
Sbjct: 137 GLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLIN 196

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
           GL    ++ KA  +L+ +V +G R +   YN +I G      + ++ ++F+      L P
Sbjct: 197 GLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVP 256

Query: 342 DFSTVNPLLVCCAEMGRM----DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA 397
           D    N  +    + GR+    D F  ++ +  K       D+  +   L G      +A
Sbjct: 257 DVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPK------PDVISYGALLHGYATAGCIA 310

Query: 398 --LDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
              ++F  +  +G   VP   ++N L+ A   +G + K+L +F  M    +  + ++FS 
Sbjct: 311 GMDNLFNVMVCEGV--VPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFST 368

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
            I      G + +A E  N +I+    P  A Y+CL +G C   ++  A  L+ D L   
Sbjct: 369 VISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKG 428

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              P    +   I ++C+ G   +  +V++ +   G  PN +  ++++ G C  G ++EA
Sbjct: 429 IPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEA 488



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/468 (22%), Positives = 184/468 (39%), Gaps = 54/468 (11%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           KG K +  SY AL +  +        D +  +M  +G +                PD   
Sbjct: 287 KGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVV----------------PDRHV 330

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           +  +I   A    +D  L ++E+M K  V  D++ + T+I   C+ GR+    E F  M 
Sbjct: 331 FNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMI 390

Query: 266 ENGILIDRAIYGVLIEG------------------------------------LVGEGKV 289
           + G+  D A+Y  LI+G                                    L  EG+V
Sbjct: 391 DTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRV 450

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            +  D++  ++ +G R +L  +NS++ G C V    +A  L +      + PD  T N L
Sbjct: 451 AEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTL 510

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY 409
           +    + GR+D+   L   M   + ++ +         + +  R ++A ++F E+   G 
Sbjct: 511 VDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGM 570

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           + S+  Y  ++G L       +A  L  K+  +N++ + L+F+I I+   + G   EA E
Sbjct: 571 AVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKE 630

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
               I     VP++  Y  +   L K    + A  L    +   +  P        I  +
Sbjct: 631 LFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSS-MEKSSCTPDSRILNEIIRML 689

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
              GE  K    L+++ ++G  P     S +I     +G   E  K+ 
Sbjct: 690 LNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKYREYIKLL 737



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/443 (20%), Positives = 183/443 (41%), Gaps = 23/443 (5%)

Query: 141 WAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCK 200
           +  +++G   N  +Y++L   L +      A++V   M   G                 +
Sbjct: 177 YKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG----------------VR 220

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+   Y  +I   +        +RV++EM   L+  DV    + +  LCK GR+    ++
Sbjct: 221 PNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDI 280

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F  M   G   D   YG L+ G    G +    +L   +V  G   D  ++N++I    R
Sbjct: 281 FDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYAR 340

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           +   DK+  +FE   +  + PD  T + ++     +GR+D+  +    M  +   V  D 
Sbjct: 341 LGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHM--IDTGVPPDT 398

Query: 381 EKFFEFLVGKEER--IMMALDVFEELKGKGY--SSVPIYNILMGALLEIGEVKKALYLFG 436
             +   + G+  R  ++ A ++  ++  KG     +  +  ++  L + G V +   +  
Sbjct: 399 AVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVD 458

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            +       N ++F+  +  +   G++ EA    + +  +   P +  YN L  G CK G
Sbjct: 459 LIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHG 518

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            ID A+ L RD L    +  T   Y + +  + ++       E+ +EM + G   +    
Sbjct: 519 RIDDALTLFRDMLHKRVT-LTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTY 577

Query: 557 SAIISGMCKHGTLEEARKVFTNL 579
           + ++ G+C++   +EA  +   L
Sbjct: 578 ATVLGGLCRNNCTDEANMLLEKL 600



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 1/169 (0%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           ++  YNIL+            L +FG++    L  +  S++  I    + G++ +A +  
Sbjct: 117 TIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLF 176

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
            K+ E   +P+V  Y+ L  GLCK  E+D A  ++R  +G     P    Y   I     
Sbjct: 177 YKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVG-AGVRPNNMTYNCLIHGYST 235

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           SG  ++ + V  EM+     P+   C++ ++ +CKHG ++EAR +F ++
Sbjct: 236 SGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSM 284



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/307 (19%), Positives = 122/307 (39%), Gaps = 41/307 (13%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           YN +I    R ++ D    +F   ++  L PD  + N L+   ++ G +D    L  +ME
Sbjct: 121 YNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKME 180

Query: 371 KLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKG--------------KGYSSVPI 414
           +    +  ++  +   + G  K + +  A  V  ++ G               GYS+  +
Sbjct: 181 EQ--GIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGM 238

Query: 415 Y----------------------NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           +                      N  M AL + G +K+A  +F  M     + + +S+  
Sbjct: 239 WKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGA 298

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
            +  +  +G I       N ++    VP    +N L     ++G +D ++++  D +   
Sbjct: 299 LLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFED-MTKQ 357

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              P    ++  I   CR G  +  +E  N M   G PP+  + S +I G C    L +A
Sbjct: 358 GVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKA 417

Query: 573 RKVFTNL 579
           +++ +++
Sbjct: 418 KELISDM 424



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 13/225 (5%)

Query: 150 HNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAM 209
           H   +  +++Y +  + LF+A   +         +A+  E+  +M  +     +  Y  +
Sbjct: 532 HKRVTLTSVSYNIILHGLFQARRTI---------VAK--EMFHEMIESGMAVSIHTYATV 580

Query: 210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
           +  L      D    + E++    V+ D++ +  +I  + K GR     ELF  +   G+
Sbjct: 581 LGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGL 640

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
           +     Y V+I  L+ E     A +L   +  S    D  I N II  L    +  KA  
Sbjct: 641 VPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGN 700

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
                 +  + P+ +T + L+   +  G+   + KLL   EK +F
Sbjct: 701 YLSKIDKKGILPEATTTSLLIYLFSVNGKYREYIKLLP--EKYRF 743


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 179/399 (44%), Gaps = 16/399 (4%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++ ++M     KP+   Y  +I  L   + +D    V+++M    V+   + Y T+I GL
Sbjct: 246 DVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGL 305

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           CK   V R   +F++M + G+  D   Y  +I+GL     + KA  + + ++D G + D 
Sbjct: 306 CKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDN 365

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             Y  II GLC+ +  D+A  +F+  +   + P+  T N L+      G+ +   + + +
Sbjct: 366 LTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKE 425

Query: 369 MEKLKFSVAADLEK-------FFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
           M       A DLE          ++L  K  +   A  +F+ +  KG   SV IY I++ 
Sbjct: 426 MS------AHDLEPDVFTYGLLLDYLC-KNGKCNEARSLFDSMIRKGIKPSVTIYGIMLH 478

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G + +   L   M    +  N   F+  I  + +   I E      K+ +    P
Sbjct: 479 GYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSP 538

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +V  Y  L   LCK+G +D A++     + N    P    +   +  +C   + EK+ E+
Sbjct: 539 NVVTYGTLIDALCKLGRVDDAVLQFNQMI-NEGVTPNNVVFNSLVYGLCTVDKWEKVEEL 597

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             EM  +G  P+ V  + ++  +CK G + EAR++  ++
Sbjct: 598 FLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSM 636



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 189/415 (45%), Gaps = 11/415 (2%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E+L ++   + + C PDV +Y  +I     E  +D    ++ EM    V  DV+ Y T+I
Sbjct: 176 ELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEMG---VSPDVVTYNTII 232

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLCK   V R  ++F++M E G+  +   Y  +I+GL    +V  A  + + +VD G +
Sbjct: 233 DGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVK 292

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
                YN+II GLC+ +  D+A  +F+  +   + PD  T N ++    +   +D    +
Sbjct: 293 PSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGV 352

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGAL 422
             QM  +   V  D   +   + G  K + +  A  VF+++  KG   +   YN L+   
Sbjct: 353 FQQM--IDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGY 410

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
           L  G+ ++ +    +M   +LE +  ++ + +    ++G   EA    + +I     PSV
Sbjct: 411 LSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSV 470

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             Y  +  G  K G +     L+   + N  S P    +   I    +    ++++ +  
Sbjct: 471 TIYGIMLHGYGKKGALSEMHDLLNLMVANGIS-PNHRIFNTVICAYAKRAMIDEVMHIFI 529

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +M Q+G  PN V    +I  +CK G +++A   F  +    +    N +V++ ++
Sbjct: 530 KMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGV--TPNNVVFNSLV 582



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 103/413 (24%), Positives = 183/413 (44%), Gaps = 6/413 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G ++EM ++L  M  N   P+   +  +I   A    +D  + ++ +MK+  +  +V+ 
Sbjct: 483 KGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVT 542

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI  LCK GRV      F +M   G+  +  ++  L+ GL    K  K  +L  +++
Sbjct: 543 YGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEML 602

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G R D+  +N+++  LC+  +  +A +L +  V   L PD  + N L+       RMD
Sbjct: 603 NQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMD 662

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
              KLL  M  +   +  ++  +   L G  K  RI  A  +F E+  KG +  V  YN 
Sbjct: 663 EAVKLLDGM--VSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNT 720

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++  L   G   +A  L+  M       +  ++SI +    ++    EA +    +  M 
Sbjct: 721 ILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMD 780

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
               +  +N +  GL K G  + AM L      N    P+   Y L   ++   G  E++
Sbjct: 781 LQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPAN-GLVPSVVTYRLIAENLIEEGSLEEL 839

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             + + M + G  PN  + +A+I  +   G +  A    + L E+    EA+T
Sbjct: 840 DCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSLEAST 892



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 106/441 (24%), Positives = 182/441 (41%), Gaps = 65/441 (14%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           KG K N  +YN    CL    L            S G+  E+++ +++M  +  +PDVF 
Sbjct: 394 KGVKPNNGTYN----CLIHGYL------------STGQWEEVVQRIKEMSAHDLEPDVFT 437

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  ++                                     LCK G+      LF  M 
Sbjct: 438 YGLLLDY-----------------------------------LCKNGKCNEARSLFDSMI 462

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
             GI     IYG+++ G   +G + +  DLL  +V +G   +  I+N++I    +    D
Sbjct: 463 RKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMID 522

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +   +F    Q  L+P+  T   L+    ++GR+D+      QM  +   V  +   F  
Sbjct: 523 EVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQM--INEGVTPNNVVFNS 580

Query: 386 FLVG-----KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
            + G     K E++    ++F E+  +G    +  +N ++  L + G V +A  L   M 
Sbjct: 581 LVYGLCTVDKWEKVE---ELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMV 637

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
            + L+ + +S++  I  H  +  + EA +  + ++     P++ +YN L  G CK G ID
Sbjct: 638 CMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRID 697

Query: 500 AAMMLVRDCL-GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
            A  L R+ L   V  G   +   L  L   RSG   +  E+   M +     +    S 
Sbjct: 698 NAYCLFREMLRKGVTPGVETYNTILNGLF--RSGRFSEARELYVNMIKSRKLWSICTYSI 755

Query: 559 IISGMCKHGTLEEARKVFTNL 579
           I+ G CK+   +EA K+F +L
Sbjct: 756 ILDGFCKNNCFDEAFKIFQSL 776



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 160/348 (45%), Gaps = 17/348 (4%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           V  D   Y  +I   C+ GR+  G   F  + + G  +D  +   L++GL    +VG+A 
Sbjct: 80  VAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAM 139

Query: 294 D-LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV--QD-DLAPDFSTVNPL 349
             LL+ + + G R  +  YN+++ GLC  ++ ++A +L  + V  QD   +PD  + N +
Sbjct: 140 HVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIV 199

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGK 407
           +      G++D  + L  +M      V+ D+  +   + G  K + +  A DVF+++  K
Sbjct: 200 INGFFNEGQVDKAYSLFLEM-----GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEK 254

Query: 408 GYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDIL 464
           G     + YN ++  L +  EV  A  +F KM    ++ ++++++  I   C  ++ D  
Sbjct: 255 GVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRA 314

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
           E      ++I+    P    YN +  GLCK   ID A  + +  + +    P    Y + 
Sbjct: 315 EG--VFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMI-DKGVKPDNLTYTII 371

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           I  +C++   ++   V  +M  +G  PN    + +I G    G  EE 
Sbjct: 372 IDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEV 419



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 136/279 (48%), Gaps = 7/279 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E   +++ M     KPDV +Y  +I        +D  +++ + M    ++ ++++
Sbjct: 623 EGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVS 682

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TL+ G CK GR+   + LFREM   G+      Y  ++ GL   G+  +A +L  +++
Sbjct: 683 YNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMI 742

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            S     +  Y+ I+ G C+   FD+A+K+F+     DL  D  T N ++    + GR +
Sbjct: 743 KSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKE 802

Query: 361 NFFKLLAQMEKLKFSVAADLEKFF-EFLVGKEERIMMALD-VFEELKGKGYS-SVPIYNI 417
           +   L A +       +    +   E L+  EE  +  LD +F  ++  G + +  + N 
Sbjct: 803 DAMDLFAAIPANGLVPSVVTYRLIAENLI--EEGSLEELDCLFSVMEKSGTAPNSHMLNA 860

Query: 418 LMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAI 454
           L+  LL+ GE+ +A     K+  +  +LE ++ S  I++
Sbjct: 861 LIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTSMLISL 899


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 106/507 (20%), Positives = 221/507 (43%), Gaps = 46/507 (9%)

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM--- 178
           V   L  +    +   FFHWA     ++H    Y   A  L  N     A +V   M   
Sbjct: 85  VVASLASDAGSMVTLSFFHWAIGYPKFRHFMRLYIVCAMSLIGNRNSEKACEVMRCMVES 144

Query: 179 -DSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
               GR+ E +E++ +M      P+      +I+V +    ++    ++EEM    V+ D
Sbjct: 145 FSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRGVQPD 204

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV------------------- 278
            ++Y  +++  CK G ++   +    M E G ++D A + +                   
Sbjct: 205 SISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFR 264

Query: 279 ----------------LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
                           +IEGL   G + +A ++L+++V  G++ ++  + S+I GLC+  
Sbjct: 265 RLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKG 324

Query: 323 QFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
             +KA++LF ++   ++  P+  T   ++       +++    LL++M++    +  +  
Sbjct: 325 WTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQ--GLVPNTN 382

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
            +   + G  K      A D+   +  +G+S ++  YN ++  L + G V++A  +    
Sbjct: 383 TYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDG 442

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
               L+ +  +++I +  H +  +I +A    NK++++   P + +Y  L    C+   +
Sbjct: 443 FQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRM 502

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
             + M   + +  +   PT   Y   I   CR G     ++  + ++  GC P+ +   A
Sbjct: 503 KESEMFFEEAV-RIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGA 561

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLL 585
           IISG+CK    +EAR ++ ++ E+ L+
Sbjct: 562 IISGLCKQSKRDEARSLYDSMIEKGLV 588



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 16/196 (8%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           +G+  N  +YNA+   L +                +GR+ E  ++LE   +N  KPD F 
Sbjct: 410 EGFSPNLCTYNAIVNGLCK----------------RGRVQEAYKMLEDGFQNGLKPDKFT 453

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  ++     + N+   L ++ +M K  ++ D+ +Y TLI   C+  R+      F E  
Sbjct: 454 YNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAV 513

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
             GI+     Y  +I G   EG +  A      L D G   D   Y +II GLC+  + D
Sbjct: 514 RIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKRD 573

Query: 326 KAYKLFEVTVQDDLAP 341
           +A  L++  ++  L P
Sbjct: 574 EARSLYDSMIEKGLVP 589


>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Glycine max]
          Length = 682

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 110/439 (25%), Positives = 203/439 (46%), Gaps = 38/439 (8%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM-KKDLVEADVM 239
            G +   LE+ ++MR    +PDV  Y  +I       +      +WE + +++LV   V+
Sbjct: 196 SGDLGFALEVFDEMRERGVEPDVVCYNMIIDGFFKRGDFVKAGEMWERLLREELVFPSVV 255

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y  +I GLCK GR   G E++  MK+N    D   Y  LI GL   G +G A  + +++
Sbjct: 256 SYNVMISGLCKCGRFSEGLEIWERMKKNERKCDLFTYSALIHGLSEAGDLGGARKVYEEM 315

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V  G R D+   N+++ GLC+    ++ ++L+E   +  L  +  + N  L    E G++
Sbjct: 316 VGRGVRPDVVTCNAMLNGLCKAGNVEECFELWEEMGKCSLR-NVRSYNIFLKGLFENGKV 374

Query: 360 DNFFKL---LAQMEKLKFSVAA--------------------------DLEKF-FEFLVG 389
           D+   L   L + +   + V                            D+++F +  L+ 
Sbjct: 375 DDAMMLWDGLLEADSATYGVVVHGLCWNGYVNRALQVLEEAEHREGGMDVDEFAYSSLIN 434

Query: 390 ---KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
              KE R+  A  V E +  +G   +  + N+L+   ++  ++  A+ +F +M G    +
Sbjct: 435 ALCKEGRLDEADGVVELMNKRGCKFNSHVCNVLIDGFVKHSKLDSAVKVFREMSGKGCSL 494

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
             +S++I I   + +    EA +C N+++E    P +  Y+ L  GL +   +DAA+ L 
Sbjct: 495 TVVSYNILINGLLRAERFREAYDCVNEMLEKGWKPDIITYSTLIGGLYESNMMDAALRLW 554

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
              L +    P    Y + I  +C SG+ E  +++ + + Q+ C  N V  + I+ G  K
Sbjct: 555 HQFL-DTGHKPDIIMYNIVIHRLCSSGKVEDALQLYSTLRQKKC-VNLVTHNTIMEGFYK 612

Query: 566 HGTLEEARKVFTNLRERKL 584
            G  E A K++ ++ E +L
Sbjct: 613 VGNCEMASKIWAHILEDEL 631



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 119/508 (23%), Positives = 221/508 (43%), Gaps = 34/508 (6%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--------AYCLSRNN 166
           + ++P  + ++LK E +P  A   F  A ++ G+  + A ++ +           L+   
Sbjct: 6   KSLSPHRLLKLLKAEKSPLSALNVFDAAVRRPGFSPSSAVFHHILRRVAADPGLLLAHAP 65

Query: 167 LFRAADQVP-------ELMDSQGRIA---EMLEILEKMRRNL-CKPDVFAYTAMIRVLAA 215
              AA   P        L+ +  +     E L + + M     C P + ++  ++     
Sbjct: 66  RIIAAIHCPCPEDVPLTLLKAYAKTRMPNEALHVFQTMPHVFGCSPTIRSFNTLLNAFVE 125

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
                     ++  +   V  +V  Y  L+  +CK G   +G  L   M   G+  DR  
Sbjct: 126 SHQWARAENFFKYFEAARVSPNVETYNVLMKVMCKKGEFEKGRGLLTWMWGAGMSPDRIT 185

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           YG LI G+   G +G A ++  ++ + G   D+  YN II G  +   F KA +++E  +
Sbjct: 186 YGTLIGGVAKSGDLGFALEVFDEMRERGVEPDVVCYNMIIDGFFKRGDFVKAGEMWERLL 245

Query: 336 QDDLA-PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER- 393
           +++L  P   + N ++    + GR     ++  +M+K +     DL  +   + G  E  
Sbjct: 246 REELVFPSVVSYNVMISGLCKCGRFSEGLEIWERMKKNERK--CDLFTYSALIHGLSEAG 303

Query: 394 -IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
            +  A  V+EE+ G+G    V   N ++  L + G V++   L+ +M   +L  N  S++
Sbjct: 304 DLGGARKVYEEMVGRGVRPDVVTCNAMLNGLCKAGNVEECFELWEEMGKCSLR-NVRSYN 362

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
           I ++   E+G + +A    + ++E       A Y  +  GLC  G ++ A+ ++ +    
Sbjct: 363 IFLKGLFENGKVDDAMMLWDGLLEADS----ATYGVVVHGLCWNGYVNRALQVLEEAEHR 418

Query: 512 VASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
                  EF Y+  I  +C+ G  ++   V+  M + GC  N  +C+ +I G  KH  L+
Sbjct: 419 EGGMDVDEFAYSSLINALCKEGRLDEADGVVELMNKRGCKFNSHVCNVLIDGFVKHSKLD 478

Query: 571 EARKVFTNLRERKLLTEANTIVYDEILI 598
            A KVF   RE      + T+V   ILI
Sbjct: 479 SAVKVF---REMSGKGCSLTVVSYNILI 503



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 95/420 (22%), Positives = 180/420 (42%), Gaps = 26/420 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K+   K +  +Y+AL + LS       A +V E M  +G                 +PDV
Sbjct: 281 KKNERKCDLFTYSALIHGLSEAGDLGGARKVYEEMVGRG----------------VRPDV 324

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
               AM+  L    N++ C  +WEEM K  +  +V +Y   + GL + G+V     L+  
Sbjct: 325 VTCNAMLNGLCKAGNVEECFELWEEMGKCSLR-NVRSYNIFLKGLFENGKVDDAMMLWDG 383

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL--VDSGYRADLGIYNSIIGGLCRV 321
           + E     D A YGV++ GL   G V +A  +L++    + G   D   Y+S+I  LC+ 
Sbjct: 384 LLE----ADSATYGVVVHGLCWNGYVNRALQVLEEAEHREGGMDVDEFAYSSLINALCKE 439

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            + D+A  + E+  +     +    N L+    +  ++D+  K+  +M     S+     
Sbjct: 440 GRLDEADGVVELMNKRGCKFNSHVCNVLIDGFVKHSKLDSAVKVFREMSGKGCSLTVVSY 499

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
                 + + ER   A D   E+  KG+   +  Y+ L+G L E   +  AL L+ +   
Sbjct: 500 NILINGLLRAERFREAYDCVNEMLEKGWKPDIITYSTLIGGLYESNMMDAALRLWHQFLD 559

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
              + + + ++I I     SG + +A + ++ + +   V ++  +N + +G  K+G  + 
Sbjct: 560 TGHKPDIIMYNIVIHRLCSSGKVEDALQLYSTLRQKKCV-NLVTHNTIMEGFYKVGNCEM 618

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A  +    L +    P    Y +T+  +C  G     +  L++    G  P  +  + ++
Sbjct: 619 ASKIWAHILEDELQ-PDIISYNITLKGLCSCGRVTDAVGFLDDALVRGFLPTAITWNILV 677



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 127/279 (45%), Gaps = 9/279 (3%)

Query: 340 APDFSTVNPLL---VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
           +P   + N LL   V   +  R +NFFK     E  + S   +       ++ K+     
Sbjct: 110 SPTIRSFNTLLNAFVESHQWARAENFFKYF---EAARVSPNVETYNVLMKVMCKKGEFEK 166

Query: 397 ALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
              +   + G G S   I Y  L+G + + G++  AL +F +MR   +E + + +++ I 
Sbjct: 167 GRGLLTWMWGAGMSPDRITYGTLIGGVAKSGDLGFALEVFDEMRERGVEPDVVCYNMIID 226

Query: 456 CHVESGDILEACECHNKIIEMSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
              + GD ++A E   +++    V PSV +YN +  GLCK G     + +      N   
Sbjct: 227 GFFKRGDFVKAGEMWERLLREELVFPSVVSYNVMISGLCKCGRFSEGLEIWERMKKNERK 286

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
               F Y+  I  +  +G+     +V  EM   G  P+ V C+A+++G+CK G +EE  +
Sbjct: 287 CDL-FTYSALIHGLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAMLNGLCKAGNVEECFE 345

Query: 575 VFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
           ++  + +  L    +  ++ + L E+ K   A ++  GL
Sbjct: 346 LWEEMGKCSLRNVRSYNIFLKGLFENGKVDDAMMLWDGL 384



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 112/246 (45%), Gaps = 6/246 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E   ++E M +  CK +      +I        LD+ ++V+ EM        V++
Sbjct: 439 EGRLDEADGVVELMNKRGCKFNSHVCNVLIDGFVKHSKLDSAVKVFREMSGKGCSLTVVS 498

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI GL +  R    ++   EM E G   D   Y  LI GL     +  A  L    +
Sbjct: 499 YNILINGLLRAERFREAYDCVNEMLEKGWKPDIITYSTLIGGLYESNMMDAALRLWHQFL 558

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D+G++ D+ +YN +I  LC   + + A +L+  T++     +  T N ++    ++G  +
Sbjct: 559 DTGHKPDIIMYNIVIHRLCSSGKVEDALQLYS-TLRQKKCVNLVTHNTIMEGFYKVGNCE 617

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNI 417
              K+ A +  L+  +  D+  +   L G     R+  A+   ++   +G+    I +NI
Sbjct: 618 MASKIWAHI--LEDELQPDIISYNITLKGLCSCGRVTDAVGFLDDALVRGFLPTAITWNI 675

Query: 418 LMGALL 423
           L+ A++
Sbjct: 676 LVRAVI 681


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 185/422 (43%), Gaps = 18/422 (4%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+      +I      + +D    V  +  K  ++  ++ + TLI GL K G+  +  EL
Sbjct: 8   PNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVEL 67

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F +M   G   D   Y  +I GL   G+   A  L K + ++G + ++  Y+++I  LC+
Sbjct: 68  FDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCK 127

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK------- 373
            ++ ++A  +F      D++P   T   L+       R      LL +M  L        
Sbjct: 128 YRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVT 187

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
           F+V  D          KE +++ A  V + +   G    V  YN LM       EV +A 
Sbjct: 188 FNVLVD-------TFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEAR 240

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            LF  M     + +  S+SI I  + ++  I EA +  N++I     P+  +YN L  GL
Sbjct: 241 KLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGL 300

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           C++G +  A  L ++   N  + P  + YA+ +   C+ G   K   +   M      PN
Sbjct: 301 CQLGRLREAQDLFKNMHTN-GNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPN 359

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSG 612
            V+ + +++ MCK G L++AR++F+ L    L  + N  +Y  I+    K+   D  L  
Sbjct: 360 LVMYNILVNAMCKSGNLKDARELFSELFVIGL--QPNVQIYTTIINGLCKEGLLDEALEA 417

Query: 613 LK 614
            +
Sbjct: 418 FR 419



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 177/415 (42%), Gaps = 41/415 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G  A    + +KM    C+ +V  Y+ +I  L   R ++  L ++  MK   +   +  Y
Sbjct: 94  GETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTY 153

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI GLC   R      L  EM    I+ +   + VL++    EGKV  A  +LK + +
Sbjct: 154 TSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTE 213

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  YNS++ G     +  +A KLF+V +     PD  + + L+    +  R+D 
Sbjct: 214 MGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDE 273

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
             +L  +M  +      +   +   + G  +  R+  A D+F+ +   G   ++  Y IL
Sbjct: 274 AKQLFNEM--IHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAIL 331

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G + KA  LF  M+   L+ N + ++I +    +SG++ +A E  +++  +  
Sbjct: 332 LDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGL 391

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P+V  Y  +  GLCK G +D A+                                    
Sbjct: 392 QPNVQIYTTIINGLCKEGLLDEAL------------------------------------ 415

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
           E    M  +GCPP+E   + II G  +H     A  +   +R+R  +T+A T  +
Sbjct: 416 EAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITDAGTTAW 470



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 139/318 (43%), Gaps = 2/318 (0%)

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M+  G+  +     +LI       +V     +L   +  G +  +  + ++I GL +V +
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK 60

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           F +A +LF+  V     PD  T   ++    ++G       L  +ME+    +       
Sbjct: 61  FAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYST 120

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
               + K  R+  ALD+F  +K K  S ++  Y  L+  L      K+A  L  +M  LN
Sbjct: 121 LIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLN 180

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           +  N ++F++ +    + G +L A      + EM   P V  YN L  G     E+  A 
Sbjct: 181 IMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEAR 240

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            L  D +      P  F Y++ I   C++   ++  ++ NEM  +G  PN V  + +I G
Sbjct: 241 KLF-DVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHG 299

Query: 563 MCKHGTLEEARKVFTNLR 580
           +C+ G L EA+ +F N+ 
Sbjct: 300 LCQLGRLREAQDLFKNMH 317



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 101/253 (39%), Gaps = 42/253 (16%)

Query: 94  DAFRKNQFQWGPQVVTELSKLRRV---------TPDLVAEVL---------KVENNPTLA 135
           D    N   +G  + TE+ + R++          PD+ +  +         +++    L 
Sbjct: 219 DVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLF 278

Query: 136 SKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS--------------- 180
           ++  H     +G   N  SYN L + L +    R A  + + M +               
Sbjct: 279 NEMIH-----QGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLD 333

Query: 181 ----QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
               QG + +   +   M+    KP++  Y  ++  +    NL     ++ E+    ++ 
Sbjct: 334 GFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQP 393

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           +V  Y T+I GLCK G +    E FR M+++G   D   Y V+I G +      +A  L+
Sbjct: 394 NVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLI 453

Query: 297 KDLVDSGYRADLG 309
            ++ D G+  D G
Sbjct: 454 GEMRDRGFITDAG 466


>gi|255578371|ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530468|gb|EEF32352.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 554

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 183/403 (45%), Gaps = 17/403 (4%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           E+L  M    C PD++A+   + +L  E  +D  L V+E++ K+  + DV+ Y  +I G+
Sbjct: 100 ELLHDMETLNCLPDIWAFNIYLHLLFVEGRIDLALEVFEKIVKNGRKPDVVTYTIIIHGV 159

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           CK  +     + +R+M   G   D    G ++ GL    KV  A +L+ D++ SG R  L
Sbjct: 160 CKIKKFDTAIQFWRDMIHKGFSPDNKACGAIVVGLCDGRKVDLAYELIIDVMKSG-RVKL 218

Query: 309 G--IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
              +YN++I G CR  + DKA  +     ++   PD  T N  L    +   +D+  KLL
Sbjct: 219 STLVYNALISGFCRAGRIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDELMLDDAKKLL 278

Query: 367 AQMEKLKFSVAADLEKFFEFLVG-------KEERIMMALDVFEELKGKGYSSVPIYNILM 419
             ME+    +  D+  + + L G        +  ++M      ++  KG   V  YN ++
Sbjct: 279 KLMERS--GIEPDVYSYNQLLKGICKGNCPDKAYLLMT----NKMWPKGLCDVVSYNTII 332

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            A  +IG+   A  LF +M    +  + ++F+I I+  +  G    A +  +++ EM   
Sbjct: 333 KAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLS 392

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P    Y  +   LCK G+++ A  +  D +    S P    +   I   C+     + + 
Sbjct: 393 PDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGIS-PDVISFNALINGFCKCSRVSEAMH 451

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           +  EM   G  P+EV    II G+ +   +  A  V+  + ++
Sbjct: 452 LYEEMQNRGSYPDEVTYKLIIGGLIEEKKISIACMVWGQMMDK 494



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 177/428 (41%), Gaps = 49/428 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I + +++ ++M ++ C+     Y   I VL      D     + +M           Y
Sbjct: 23  GLIDKAVQVFDEMSQSNCRVFSIDYNRFIGVLINHSRFDLANHYYSQMGTRGFSLSSFTY 82

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
              I GLCK        EL  +M+    L D   + + +  L  EG++  A ++ + +V 
Sbjct: 83  SRFITGLCKVKNFTFIDELLHDMETLNCLPDIWAFNIYLHLLFVEGRIDLALEVFEKIVK 142

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G + D+  Y  II G+C++K+FD A + +   +    +PD      ++V   +  ++D 
Sbjct: 143 NGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMIHKGFSPDNKACGAIVVGLCDGRKVDL 202

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
            ++L+  + K                                  G+   S  +YN L+  
Sbjct: 203 AYELIIDVMK---------------------------------SGRVKLSTLVYNALISG 229

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-P 480
               G + KA  +   MR    E + +++++ +    +   +L+  +   K++E S + P
Sbjct: 230 FCRAGRIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDEL-MLDDAKKLLKLMERSGIEP 288

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRD-----CLGNVASGPTEFKYALTILHVCRSGEAE 535
            V +YN L KG+CK    D A +L+ +      L +V S      Y   I   C+ G+  
Sbjct: 289 DVYSYNQLLKGICKGNCPDKAYLLMTNKMWPKGLCDVVS------YNTIIKAFCKIGDTT 342

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
              ++  EM Q+G PP+ V  +  I      G+   A+K+   + E  L    + I Y  
Sbjct: 343 SAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGL--SPDCIFYTT 400

Query: 596 ILIEHMKK 603
           I I+H+ K
Sbjct: 401 I-IDHLCK 407



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 123/301 (40%), Gaps = 73/301 (24%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI +   I   MRRN C+PD+  Y   +     E  LD   ++ + M++  +E DV +Y
Sbjct: 234 GRIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLMERSGIEPDVYSY 293

Query: 242 VTLIMGLCKG-----------------------------------GRVVRGHELFREMKE 266
             L+ G+CKG                                   G     ++LF EM +
Sbjct: 294 NQLLKGICKGNCPDKAYLLMTNKMWPKGLCDVVSYNTIIKAFCKIGDTTSAYKLFEEMGQ 353

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            GI  D   + + I+  +G+G    A  LL  + + G   D   Y +II  LC+  + + 
Sbjct: 354 KGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEM 413

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A+ +F   V+  ++PD  + N L+         + F K                      
Sbjct: 414 AHSIFCDMVEQGISPDVISFNALI---------NGFCKC--------------------- 443

Query: 387 LVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM--RGLNL 443
                 R+  A+ ++EE++ +G Y     Y +++G L+E  ++  A  ++G+M  +G  L
Sbjct: 444 -----SRVSEAMHLYEEMQNRGSYPDEVTYKLIIGGLIEEKKISIACMVWGQMMDKGFTL 498

Query: 444 E 444
           +
Sbjct: 499 D 499



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 64/129 (49%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++L++M      PD   YT +I  L     ++    ++ +M +  +  DV+++  LI G 
Sbjct: 381 KLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGF 440

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           CK  RV     L+ EM+  G   D   Y ++I GL+ E K+  AC +   ++D G+  D 
Sbjct: 441 CKCSRVSEAMHLYEEMQNRGSYPDEVTYKLIIGGLIEEKKISIACMVWGQMMDKGFTLDR 500

Query: 309 GIYNSIIGG 317
            I  ++I G
Sbjct: 501 AIAQTLIRG 509


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 130/589 (22%), Positives = 235/589 (39%), Gaps = 98/589 (16%)

Query: 69  TQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTEL------SKLRRVTPD-- 120
           T+ P  DPK   L    +P +   +     N   +    +++L      SKL+ +  +  
Sbjct: 16  TRFPSLDPK---LNNTKTPFSSPNSTYTTPNSHTFDTPTISQLIAKQHWSKLKTIVKETN 72

Query: 121 ---LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177
              L+  +   E  P L   +F W  K+ G  HN   +  L + L+     +  +++  L
Sbjct: 73  PSSLLQHLFNSEAQPDLILCYFKWTQKEFGAIHNVEQFCRLLHLLANA---KNYNKIRAL 129

Query: 178 MDS---------------------------------------QGRIAEMLEILEKMRRNL 198
           +DS                                        G +   LE  ++     
Sbjct: 130 LDSFAKNAHYSNSTIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYG 189

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
            +    +   M+  L  E  +     V++EM +  +  +V+ +  +I GLCK G+  +  
Sbjct: 190 FRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAG 249

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           ++  +MK  G       Y  +I+G    GK+ KA  LLK++V      +   +N +I G 
Sbjct: 250 DVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGF 309

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           CR +    A K+FE   +  L P+  T N L+      G++D                  
Sbjct: 310 CRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDE----------------- 352

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
                             AL + +++ G G   +V  YN L+    +   +K+A  +   
Sbjct: 353 ------------------ALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDD 394

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           +    L  N ++F+  I  + ++G + +A    + +++    P+V+ YNCL  G C+ G 
Sbjct: 395 IGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGN 454

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT---QEGCPPNEV 554
           +  A  L ++  GN         Y + +  +C+ GE  K + +L+EMT   ++G   N V
Sbjct: 455 VKEARKLAKEMEGNGLKADL-VTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIV 513

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
             + +I G C  G LEEA ++   + E+ L+   N   YD +  E M+K
Sbjct: 514 TYNVLIKGFCNKGKLEEANRLLNEMLEKGLI--PNRTTYDILRDEMMEK 560



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 153/323 (47%), Gaps = 8/323 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  +  +++E M+     P V  Y  +I        +     + +EM    +  + + +
Sbjct: 243 GKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITF 302

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G C+   V    ++F EM+  G+  +   Y  LI GL   GK+ +A  L   +  
Sbjct: 303 NILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSG 362

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + ++  YN++I G C+ K   +A ++ +   +  LAP+  T N L+    + GRMD+
Sbjct: 363 MGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDD 422

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNIL 418
            F L + M  L   V  ++  +   +VG  +E  +  A  + +E++G G  + +  YNIL
Sbjct: 423 AFLLRSMM--LDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNIL 480

Query: 419 MGALLEIGEVKKALYLFGKMRGL---NLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           + AL + GE +KA+ L  +M  +       N +++++ I+     G + EA    N+++E
Sbjct: 481 VDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLE 540

Query: 476 MSQVPSVAAYNCLTKGLCKIGEI 498
              +P+   Y+ L   + + G I
Sbjct: 541 KGLIPNRTTYDILRDEMMEKGFI 563


>gi|224135537|ref|XP_002322098.1| predicted protein [Populus trichocarpa]
 gi|222869094|gb|EEF06225.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 188/430 (43%), Gaps = 21/430 (4%)

Query: 128 VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEM 187
           +E    L    F     ++    N A+++ L  CL R  LF     + E M    R+ E 
Sbjct: 243 IERGRELMHVLFQRMRHEEDQSVNSAAFDNLVDCLCREGLFNEVFMIAEEMPQGNRVNE- 301

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
                           FAY  +I  L          RV   M+K      V++Y ++I G
Sbjct: 302 ---------------DFAYGHLIDSLCKVGRSHGASRVVYIMRKKGFTPSVVSYNSIIHG 346

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK G  +R ++L  E    G L+    Y VL+E L     + KA ++LK +++ G    
Sbjct: 347 LCKEGGCMRAYQLLEEGVGFGYLLSEYTYKVLVEALCQAMDLDKAREVLKVMLNKGGMDR 406

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
             IYN  +  LC +    +   +    +Q +  PD  T+N ++    +MGR++   K+L 
Sbjct: 407 TRIYNIYLRALCLMNNPTELLNVLVSMLQTNCQPDVITLNTVINGFCKMGRVEEALKVLN 466

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
            M   KFS A D   F   + G     R   A ++  ++  KG +  V  YN ++  L +
Sbjct: 467 DMMTGKFS-APDAVTFTSIISGLLNVGRSQEARNLLLQMLEKGITPGVVTYNAILRGLFK 525

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
           +   K+A+ +F +M    +  NS ++SI ++   ESG I  A +  +++I  S++     
Sbjct: 526 LQLTKEAMAVFDEMITDGVAANSQTYSIIVEGLCESGQIDGAKKFWDEVIWPSKIHDDFV 585

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y  + KGLC+ G ++ A+  + + L +    P    Y + I   C  G   +  ++  EM
Sbjct: 586 YAAILKGLCRSGHLNEAIHFLYE-LVDSGVNPNIVSYNIVIDRACSLGMKREAYQIAGEM 644

Query: 545 TQEGCPPNEV 554
            + G  P+ V
Sbjct: 645 QKNGLTPDAV 654



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 154/348 (44%), Gaps = 6/348 (1%)

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           +++Y TL+ G  K G +   ++LF EM E G++ +   Y +LI G++ +  + +  +L+ 
Sbjct: 192 IVSYTTLVNGYSKIGEISDAYKLFDEMPEWGVVPNSLSYSLLIRGVLRKRDIERGRELMH 251

Query: 298 DLV-----DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
            L      +     +   +++++  LCR   F++ + + E   Q +   +      L+  
Sbjct: 252 VLFQRMRHEEDQSVNSAAFDNLVDCLCREGLFNEVFMIAEEMPQGNRVNEDFAYGHLIDS 311

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-S 411
             ++GR     +++  M K  F+ +          + KE   M A  + EE  G GY  S
Sbjct: 312 LCKVGRSHGASRVVYIMRKKGFTPSVVSYNSIIHGLCKEGGCMRAYQLLEEGVGFGYLLS 371

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
              Y +L+ AL +  ++ KA  +   M        +  ++I ++      +  E      
Sbjct: 372 EYTYKVLVEALCQAMDLDKAREVLKVMLNKGGMDRTRIYNIYLRALCLMNNPTELLNVLV 431

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
            +++ +  P V   N +  G CK+G ++ A+ ++ D +    S P    +   I  +   
Sbjct: 432 SMLQTNCQPDVITLNTVINGFCKMGRVEEALKVLNDMMTGKFSAPDAVTFTSIISGLLNV 491

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           G +++   +L +M ++G  P  V  +AI+ G+ K    +EA  VF  +
Sbjct: 492 GRSQEARNLLLQMLEKGITPGVVTYNAILRGLFKLQLTKEAMAVFDEM 539



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 80/168 (47%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR  E   +L +M      P V  Y A++R L   +     + V++EM  D V A+   Y
Sbjct: 492 GRSQEARNLLLQMLEKGITPGVVTYNAILRGLFKLQLTKEAMAVFDEMITDGVAANSQTY 551

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++ GLC+ G++    + + E+     + D  +Y  +++GL   G + +A   L +LVD
Sbjct: 552 SIIVEGLCESGQIDGAKKFWDEVIWPSKIHDDFVYAAILKGLCRSGHLNEAIHFLYELVD 611

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
           SG   ++  YN +I   C +    +AY++     ++ L PD  T   L
Sbjct: 612 SGVNPNIVSYNIVIDRACSLGMKREAYQIAGEMQKNGLTPDAVTWRTL 659



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 137/320 (42%), Gaps = 17/320 (5%)

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           Y  LI+          A  +L D+++ G+   +  Y +++ G  ++ +   AYKLF+   
Sbjct: 160 YNRLIDQFCSVSLPNVAHRMLYDMINRGHCPSIVSYTTLVNGYSKIGEISDAYKLFDEMP 219

Query: 336 QDDLAPDFSTVNPLLVCC-----AEMGR--MDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
           +  + P+  + + L+         E GR  M   F+ +   E    + AA     F+ LV
Sbjct: 220 EWGVVPNSLSYSLLIRGVLRKRDIERGRELMHVLFQRMRHEEDQSVNSAA-----FDNLV 274

Query: 389 GKEERIMMALDVF---EEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
               R  +  +VF   EE+ +G   +    Y  L+ +L ++G    A  +   MR     
Sbjct: 275 DCLCREGLFNEVFMIAEEMPQGNRVNEDFAYGHLIDSLCKVGRSHGASRVVYIMRKKGFT 334

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            + +S++  I    + G  + A +   + +    + S   Y  L + LC+  ++D A  +
Sbjct: 335 PSVVSYNSIIHGLCKEGGCMRAYQLLEEGVGFGYLLSEYTYKVLVEALCQAMDLDKAREV 394

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
           ++  L       T   Y + +  +C      +++ VL  M Q  C P+ +  + +I+G C
Sbjct: 395 LKVMLNKGGMDRTRI-YNIYLRALCLMNNPTELLNVLVSMLQTNCQPDVITLNTVINGFC 453

Query: 565 KHGTLEEARKVFTNLRERKL 584
           K G +EEA KV  ++   K 
Sbjct: 454 KMGRVEEALKVLNDMMTGKF 473


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 115/487 (23%), Positives = 208/487 (42%), Gaps = 60/487 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK--------- 231
           Q R+ + L++ +KM+++   PDV  Y A+I  L A++ ++  L +  EMK+         
Sbjct: 316 QSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQI 375

Query: 232 -----------------------DL-VEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
                                  DL  EA ++ Y +++ GL  G  V + + L R M  +
Sbjct: 376 LSKLIAYCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLRAMTGD 435

Query: 268 G----------------ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
                            +  D   + ++I+GL   GK+  A  L +D+V  G + ++ +Y
Sbjct: 436 NYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLY 495

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N++I  L    + ++ Y L +        P   T N +  C   + R ++    L  + +
Sbjct: 496 NNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGC---LCRREDVTGALDMVRE 552

Query: 372 LKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGE 427
           ++        K +  LV    K +R   A +   E+  +G+   +  Y+  +   ++I  
Sbjct: 553 MRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKA 612

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           V +AL +F  +       + ++++  I    +   + EA +  ++++    VPSV  YN 
Sbjct: 613 VDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNL 672

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L  G CK G+ID A   +   +G     P    Y   I  +C +G  +  I + NEM  +
Sbjct: 673 LIDGWCKNGDIDQAFHCLSRMVGK-EREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGK 731

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           GC PN +   A+I G+CK G  + A   F  + ER+     +TIVY  ++   +  K   
Sbjct: 732 GCSPNRISFIALIHGLCKCGWPDAALLYFREMGERE---TPDTIVYVALITSFISNKNPT 788

Query: 608 LVLSGLK 614
           L    LK
Sbjct: 789 LAFEILK 795



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 128/573 (22%), Positives = 235/573 (41%), Gaps = 82/573 (14%)

Query: 86  SPIARFITDA----FRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHW 141
           SP    IT+A    F K  F    Q +     +  +T ++V  VL    +  +A +FF+W
Sbjct: 60  SPHGAHITNALISIFTKQPFNPDNQELRNFGSM--LTHEVVENVLSGLKSWKIAYRFFNW 117

Query: 142 AGKQKGYKHNFASYNALAYCLS--RNNL---FRAADQVPE--------------LMDSQG 182
           A  Q G+ HN  +YNA+A CLS  R N      + D V                 + S G
Sbjct: 118 ASDQGGFNHNCYTYNAMASCLSHARQNAPLSLLSMDIVNSRCAMSPGALGFFIRCLGSTG 177

Query: 183 RIAEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
            + E   + ++++   LC P+ +++  ++  ++   ++D      +EM     E D    
Sbjct: 178 LVEEANLLFDQVKMMRLCVPNSYSFNCLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTL 237

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +++   C   +  +   +F E+   G  +D  +  +L+      G+V KA +L++ + D
Sbjct: 238 TSVLQAYCNSRKFDKALSVFNEIYGRG-WVDGHVLSILVLTFSKCGEVDKAFELIERMED 296

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G R +   +  +I G  R  + DKA +LF+   +   APD S  + L+        ++ 
Sbjct: 297 LGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEK 356

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS-VPIYNILMG 420
              LL++M++L   +  D++   + +    E + +   + E L+     + + +YN ++ 
Sbjct: 357 ALHLLSEMKEL--GIDPDIQILSKLIAYCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLN 414

Query: 421 ALLEIGEVKKALYLFGKMRG----LNLEVN------------SLSFSIAIQCHVESGDIL 464
            L+    V KA YL   M G     N EVN            + SFSI I     +G + 
Sbjct: 415 GLVNGKSVDKAYYLLRAMTGDNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLD 474

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK---- 520
            A      ++ +    +V  YN L   L     ++   +L+++  G+    PT+F     
Sbjct: 475 LALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGS-GFRPTQFTHNSI 533

Query: 521 -------------------------------YALTILHVCRSGEAEKIIEVLNEMTQEGC 549
                                          Y L +  +C+   + +    L EM +EG 
Sbjct: 534 FGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGF 593

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
            P+ V  SA I G  K   +++A ++F ++  R
Sbjct: 594 LPDIVAYSAAIDGFVKIKAVDQALEIFRDICAR 626



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 111/460 (24%), Positives = 172/460 (37%), Gaps = 92/460 (20%)

Query: 93  TDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNF 152
           TD F  N+F     +V E+ +    +  +V + L       LA   F     + G K N 
Sbjct: 438 TDNFEVNKFF----MVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFR-DMVRVGCKQNV 492

Query: 153 ASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRV 212
             YN L   LS +N                R+ E   +L++M+ +  +P  F + ++   
Sbjct: 493 LLYNNLIDKLSNSN----------------RLEECYLLLKEMKGSGFRPTQFTHNSIFGC 536

Query: 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           L    ++   L +  EM+    E  +  Y  L+  LCK  R         EM   G L D
Sbjct: 537 LCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPD 596

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              Y   I+G V    V +A ++ +D+   GY  D+  YN++I G C+VK+  +A+ + +
Sbjct: 597 IVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILD 656

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392
             V   L P   T N L+    + G +D  F  L++M                  VGKE 
Sbjct: 657 EMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRM------------------VGKER 698

Query: 393 RIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
                             +V  Y  L+  L   G    A++L+ +MRG     N +SF I
Sbjct: 699 E----------------PNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISF-I 741

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
           A                                  L  GLCK G  DAA++  R+ +G  
Sbjct: 742 A----------------------------------LIHGLCKCGWPDAALLYFRE-MGER 766

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
            + P    Y   I     +       E+L EM  +G  P+
Sbjct: 767 ET-PDTIVYVALITSFISNKNPTLAFEILKEMVAKGKFPD 805


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 188/412 (45%), Gaps = 46/412 (11%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+G  A+M+ +   M+ N    +   +T +I   A    +D  + ++ EM++  V  DV+
Sbjct: 417 SEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVV 476

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I    + GR+    E F +M   GI  + A+Y  +I+G    G + KA +L+ ++
Sbjct: 477 TYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEM 536

Query: 300 VDSGY-RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           ++ G  R D+  ++S+I  LC+  +   A+ +F++       P   T N L+     +G+
Sbjct: 537 INKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGK 596

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL 418
           MD  FK+L  ME                +VG E  I+                   YN L
Sbjct: 597 MDKAFKILDAME----------------VVGVEPDIV------------------TYNTL 622

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G +   L LF +M+   ++ N++++ I +     +G  + A +  +++IE   
Sbjct: 623 LDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGT 682

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC-----RSGE 533
             +V+ Y  +  GLC+    D A++L +        G    K+++TIL+       +   
Sbjct: 683 TVTVSIYGIILGGLCRNNCADEAIILFQKL------GTMNVKFSITILNTMINAMYKVQR 736

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
            E+  E+   ++  G  PNE     +I  + K G +E+A  +F+++ +  ++
Sbjct: 737 KEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIV 788



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/432 (21%), Positives = 185/432 (42%), Gaps = 9/432 (2%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G   +   +  +M R   KPDV  Y  +I  L   R +D    V  +M  D  + D +
Sbjct: 277 NEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTV 336

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I G    GR+    ++FREMK+ G++ +       +  L   G+  +A +    +
Sbjct: 337 TYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSM 396

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G++ D+  Y +++ G      F     LF     + +A +      L+   A+ G +
Sbjct: 397 TAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMV 456

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYN 416
           D+   +  +M++    V+ D+  +   +    +  R+  A++ F ++  +G   +  +Y+
Sbjct: 457 DDAMLIFTEMQQQ--GVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYS 514

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNL-EVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
            ++      G + KA  L  +M    +   + + FS  I    + G +++A +  +   +
Sbjct: 515 SIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATD 574

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
           + + P V  +N L  G C +G++D A  ++ D +  V   P    Y   +    ++G   
Sbjct: 575 IGERPGVITFNSLIDGYCLVGKMDKAFKIL-DAMEVVGVEPDIVTYNTLLDGYFKNGRIN 633

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
             + +  EM ++G  PN V    +++G+ + G    ARK F  + E    T     +Y  
Sbjct: 634 DGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESG--TTVTVSIYGI 691

Query: 596 ILIEHMKKKTAD 607
           IL    +   AD
Sbjct: 692 ILGGLCRNNCAD 703



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 115/513 (22%), Positives = 212/513 (41%), Gaps = 39/513 (7%)

Query: 118 TPDLVAEVLKV-----ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAAD 172
           +PD+VA    +     E     A   FH   +Q G K +  +YN +   L +    RA D
Sbjct: 262 SPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQ-GVKPDVVTYNLIIDALCKA---RAMD 317

Query: 173 QVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
           +           AE+  +L +M  +  +PD   Y+ MI   A    L    +++ EMKK 
Sbjct: 318 K-----------AEL--VLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKR 364

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            +  +++   + +  LCK GR     E F  M   G   D   Y  L+ G   EG     
Sbjct: 365 GLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADM 424

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
             L   +  +G  A+  ++  +I    +    D A  +F    Q  ++PD  T + ++  
Sbjct: 425 IGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVIST 484

Query: 353 CAEMGR----MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
            + MGR    M+ F +++A+  +   +V + + + F    G    ++ A ++  E+  KG
Sbjct: 485 FSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGG----LVKAKELVSEMINKG 540

Query: 409 YS--SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
                +  ++ ++ +L + G V  A  +F     +      ++F+  I  +   G + +A
Sbjct: 541 IPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKA 600

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
            +  + +  +   P +  YN L  G  K G I+  + L R+ +      P    Y + + 
Sbjct: 601 FKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFRE-MQRKGVKPNTVTYGIMLA 659

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL-- 584
            + R+G      +  +EM + G      I   I+ G+C++   +EA  +F  L    +  
Sbjct: 660 GLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKF 719

Query: 585 -LTEANTIV---YDEILIEHMKKKTADLVLSGL 613
            +T  NT++   Y     E  K+  A +  SGL
Sbjct: 720 SITILNTMINAMYKVQRKEEAKELFATISASGL 752



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 148/360 (41%), Gaps = 41/360 (11%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + + + I  +M++    PDV  Y+ +I   +    L   +  + +M    ++ +   
Sbjct: 453 RGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAV 512

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGI-LIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y ++I G C  G +V+  EL  EM   GI   D   +  +I  L  +G+V  A D+    
Sbjct: 513 YSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLA 572

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D G R  +  +NS+I G C V + DKA+K+ +      + PD  T N LL    + GR+
Sbjct: 573 TDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRI 632

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS------- 410
           ++   L  +M++    V  +   +   L G  +  R + A   F E+   G +       
Sbjct: 633 NDGLTLFREMQRK--GVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYG 690

Query: 411 -----------------------------SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
                                        S+ I N ++ A+ ++   ++A  LF  +   
Sbjct: 691 IILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISAS 750

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            L  N  ++ + I   ++ G + +A    + + +   VP     N + + L + GEI  A
Sbjct: 751 GLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKA 810



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 150/335 (44%), Gaps = 29/335 (8%)

Query: 146 KGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDS-------------------QGRI 184
           +G + N A Y+++   +C+    L +A + V E+++                     GR+
Sbjct: 504 RGIQPNTAVYSSIIQGFCM-HGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRV 562

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            +  +I +       +P V  + ++I        +D   ++ + M+   VE D++ Y TL
Sbjct: 563 MDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTL 622

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + G  K GR+  G  LFREM+  G+  +   YG+++ GL   G+   A     ++++SG 
Sbjct: 623 LDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGT 682

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
              + IY  I+GGLCR    D+A  LF+     ++    + +N ++    ++ R +   +
Sbjct: 683 TVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKE 742

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYNILMGA 421
           L A +                  + K+  +  A ++F  ++  G   VP   + N ++  
Sbjct: 743 LFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGI--VPGSRLLNRIIRM 800

Query: 422 LLEIGEVKKALYLFGKMRG--LNLEVNSLSFSIAI 454
           LLE GE+ KA     K+ G  + LE ++ S  +++
Sbjct: 801 LLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSL 835



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 15/251 (5%)

Query: 341 PDFSTVNPLLVCCAEMGRMD----NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
           P F T N L+ CC    R D     F  +L    K+    A  L K   +    EE + +
Sbjct: 155 PTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNV 214

Query: 397 ALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFS 451
            L    EL       VP    Y+I++ AL +    ++AL L   M  +G     + +++S
Sbjct: 215 LLHRMSEL-----GCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYS 269

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
             I      G+  +AC   +++      P V  YN +   LCK   +D A +++R    +
Sbjct: 270 TVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTD 329

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
            A  P    Y+  I      G  ++  ++  EM + G  PN V C++ ++ +CKHG  +E
Sbjct: 330 GAQ-PDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKE 388

Query: 572 ARKVFTNLRER 582
           A + F ++  +
Sbjct: 389 AAEFFDSMTAK 399


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 111/438 (25%), Positives = 188/438 (42%), Gaps = 39/438 (8%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI-------RVLAA---------ERNLDA 221
           + + GR AE   +L       C PDV AY AM+       +V AA         ER+   
Sbjct: 108 LSASGRTAEARRVLAA-----CGPDVMAYNAMMAGYCGAGQVDAARRWCAERAVERDAYT 162

Query: 222 C----------------LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           C                L V +EM +     DV+ Y  L+   CK     +  +L  EM+
Sbjct: 163 CDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMR 222

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           + G   D   Y V++ G+  EG+V  A + LK+L   G   +   YN ++ GLC  ++++
Sbjct: 223 DKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWE 282

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
            A +L     Q    P+  T N L+      G ++   ++L Q+ K   S  +       
Sbjct: 283 DAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLL 342

Query: 386 FLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
               K++++  A+   + +  +G Y  +  YN L+ AL   GEV  A+ L  +++     
Sbjct: 343 HAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCA 402

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
              +S++  I    ++G   EA E  N+++     P +  Y+ +  GLC+   I+ A+  
Sbjct: 403 PVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRA 462

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
               + ++   P    Y   IL +C+  E    I++   M   GC PNE   + +I G+ 
Sbjct: 463 FGK-VQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLA 521

Query: 565 KHGTLEEARKVFTNLRER 582
             G ++EAR +   L  R
Sbjct: 522 YEGLIKEARDLLDELCSR 539



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 170/371 (45%), Gaps = 6/371 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR A  L +L++M R  C PDV  YT ++            +++ +EM+      D++ 
Sbjct: 173 RGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVT 232

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  ++ G+C+ GRV    E  + +   G   +   Y ++++GL    +   A +L+ ++ 
Sbjct: 233 YNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMG 292

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   ++  +N +I  LCR    + A ++ E   +   +P+  + NPLL    +  +MD
Sbjct: 293 QKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMD 352

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNI 417
                L  M  +      D+  +   L    +   + +A+++  +LK KG + V I YN 
Sbjct: 353 KAMAFLDLM--VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNT 410

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++  L + G+ K+AL L  +M    L+ + +++S           I +A     K+ +M 
Sbjct: 411 VIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMG 470

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P+   YN +  GLCK  E  +A+ L    +GN    P E  Y + I  +   G  ++ 
Sbjct: 471 IRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGN-GCMPNESTYTILIEGLAYEGLIKEA 529

Query: 538 IEVLNEMTQEG 548
            ++L+E+   G
Sbjct: 530 RDLLDELCSRG 540



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 17/193 (8%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           QKG   N  ++N L   L R  L   A                LE+LE++ +  C P+  
Sbjct: 293 QKGCPPNVVTFNMLISFLCRKGLVEPA----------------LEVLEQIPKYGCSPNSL 336

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
           +Y  ++     ++ +D  +   + M       D+++Y TL+  LC+ G V    EL  ++
Sbjct: 337 SYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQL 396

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K+ G       Y  +I+GL   GK  +A +LL ++V  G + D+  Y++I  GLCR  + 
Sbjct: 397 KDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRI 456

Query: 325 DKAYKLFEVTVQD 337
           + A + F   VQD
Sbjct: 457 EDAIRAFG-KVQD 468



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 19/178 (10%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAA-------------------DQVPELMDSQGRIA 185
            +G   +  SYN L   L R+     A                   + V + +   G+  
Sbjct: 363 SRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTK 422

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E LE+L +M     +PD+  Y+ +   L  E  ++  +R + +++   +  + + Y  +I
Sbjct: 423 EALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAII 482

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +GLCK        +LF  M  NG + + + Y +LIEGL  EG + +A DLL +L   G
Sbjct: 483 LGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 540


>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
 gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
          Length = 826

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 131/594 (22%), Positives = 234/594 (39%), Gaps = 105/594 (17%)

Query: 102 QWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYN--ALA 159
            W   + T  S        +   V     +P L  K F WA K+  +      ++  +L 
Sbjct: 47  HWEKSLETRFSDCETPVSGIAHFVFDRIRDPGLGLKLFEWASKRSDFNDLLDGFSCSSLL 106

Query: 160 YCLSRNNLFRAADQVPELMDSQ----------------------GRIAEMLEILEKMRRN 197
             L+R  +F   + + E M  +                       R  E+  I   +   
Sbjct: 107 KLLARCRVFVEVENLLETMKCKDLAPTREALSFVVGAYVDSGLVNRALELYHIAYDIHNY 166

Query: 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEM--------------------KKDLVEA- 236
           L  PDV A  A++  L  ++ ++   +V+EEM                    K+  VE  
Sbjct: 167 L--PDVIACNALLNALIQQKKVEIARKVYEEMVKRDGCWDNYSVCIMVRGLCKERKVEEG 224

Query: 237 --------------DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
                         +++ Y TL+ G  K G V R + LF+E+K  G L     YG++I G
Sbjct: 225 RKLINDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTETYGIMING 284

Query: 283 L------------------------------VGEGKVGKACDL-----LKDLVDSGYRAD 307
           L                              + + ++   C +     L+ + ++G   D
Sbjct: 285 LCKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEPD 344

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  YN++I G CR  +  +A +L E  ++  L+P+  +  PL+    + G+    F L  
Sbjct: 345 ITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYCKQGKCLRAFDLFI 404

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLE 424
            M +    +  DL  +   + G      + +AL V +++  +G      +YN+LM  L +
Sbjct: 405 GMTEKGHPL--DLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGLCK 462

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G +  A  L  +M   NL +++   +  +   +  G + EA +     I     P V  
Sbjct: 463 KGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVG 522

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN + KG CK G ++ A+  V+  + +    P EF Y+  I    +  +    +++  +M
Sbjct: 523 YNAMIKGYCKFGMMNDALTCVQR-MKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQM 581

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
            ++ C PN V  +++I+G C+ G    A K F  +R   L  + N + Y  ILI
Sbjct: 582 VKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGL--KPNVVTY-TILI 632



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 113/506 (22%), Positives = 209/506 (41%), Gaps = 76/506 (15%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------------PELMDSQGRIAEM 187
           K KG+     +Y  +   L +   F+A D +                  ++D+Q +    
Sbjct: 267 KMKGFLPTTETYGIMINGLCKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCK 326

Query: 188 LEILEKMR---RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           +E+ + +R    N C+PD+  Y  +I     +  +     + E   K  +  + ++Y  L
Sbjct: 327 IEVGKTLRWITENGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPL 386

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I   CK G+ +R  +LF  M E G  +D   YG L+ GLV  G+V  A  +   +V+ G 
Sbjct: 387 IHVYCKQGKCLRAFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGV 446

Query: 305 RADLGIYNSIIGGLC-----------------------------------RVKQFDKAYK 329
             D  +YN ++ GLC                                   R  + D+A K
Sbjct: 447 LPDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKK 506

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG 389
           LFE+T+   + P     N ++    + G M++    + +M+    S   D   +   + G
Sbjct: 507 LFELTIAKGMDPGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHS--PDEFTYSTIIDG 564

Query: 390 --KEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
             K+  +  AL +F ++ K K   +V  Y  L+      G+  +A   F +MR   L+ N
Sbjct: 565 YVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPN 624

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC------------K 494
            ++++I I C  + G I +AC     ++    +P+   +N L  GL             +
Sbjct: 625 VVTYTILIGCFCKEGKISKACSFFELMLLNRCIPNDVTFNYLINGLTNNLATAVSNKANE 684

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFK---YALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
             EI A++M+  D    + S   E +   Y   ++ +C        +++ ++MT +G  P
Sbjct: 685 SLEIKASLMM--DFFRTMISDGWEQRVAAYNSVLICLCHHKMVNAALQLRDKMTGKGIFP 742

Query: 552 NEVICSAIISGMCKHGTLEEARKVFT 577
           + V  +A++ G+C  G  +E +   +
Sbjct: 743 DPVSFAALVYGLCLEGRSKEWKNTIS 768


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 191/402 (47%), Gaps = 9/402 (2%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +P+      +++ L  E  +   LR  +++         ++Y  LI G+CK G       
Sbjct: 125 QPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIR 184

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L R ++   I  +  IY ++I+ L  +  V +A DL  ++V  G   D+  Y+ ++ G C
Sbjct: 185 LLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFC 244

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
            V Q ++A  L    V +++ PD  T   L+    + G++     +LA M  +K  V  D
Sbjct: 245 IVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVM--VKACVNLD 302

Query: 380 LEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
           +  +   + G      +  A  VF  +   G +  V  Y+I++  L +I  V +AL LF 
Sbjct: 303 VVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFE 362

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           ++   N+  ++++++  I C  +SG I    +  +++++  Q P V  YN L   LCK G
Sbjct: 363 EIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNG 422

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            +D A+ L    + + A  P  + + + +  +C+ G  +  +E   ++  +G   N    
Sbjct: 423 HLDRAIALFNK-MKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTY 481

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           + +I+G+CK G L+EA  + + + +   +++A T    EI+I
Sbjct: 482 TVMINGLCKEGLLDEALALQSRMEDNGCISDAVTF---EIMI 520



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 114/492 (23%), Positives = 204/492 (41%), Gaps = 43/492 (8%)

Query: 42  PNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQR---HLSPIARFITDAFRK 98
           PN     H  PP      D     N      P+ P TF   +    L  + R+ T     
Sbjct: 23  PNLCFHSHSLPPLTHNADDAVSQFNHMFHVHPT-PHTFHFNKILISLVNVKRYPTAISLY 81

Query: 99  NQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQK----GYKHNFAS 154
            Q +           L  V PD     + +            ++G  K    GY+ N  +
Sbjct: 82  KQME-----------LSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTIT 130

Query: 155 YNALAYCLSRNNLFRAADQVPELMDSQG----------------RIAEM---LEILEKMR 195
            N L   L      + A +  + + +QG                +I E    + +L ++ 
Sbjct: 131 LNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIE 190

Query: 196 RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVV 255
           R   +P+V  Y+ +I  L  +  +D    ++ EM    +  DV+ Y  L+ G C  G++ 
Sbjct: 191 RWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLN 250

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
           R  +L  EM    I  D   Y +L++ L  EGKV +A ++L  +V +    D+ +Y++++
Sbjct: 251 RAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLM 310

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            G C V + + A ++F    Q  + PD    + ++    ++ R+D    L  ++ +   +
Sbjct: 311 DGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQK--N 368

Query: 376 VAADLEKFFEFL--VGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKAL 432
           +  D   +   +  + K  RI    D+F+E+  +G    V  YN L+ AL + G + +A+
Sbjct: 369 MVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAI 428

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            LF KM+   +  N  +F+I +    + G +  A E    ++      +V  Y  +  GL
Sbjct: 429 ALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGL 488

Query: 493 CKIGEIDAAMML 504
           CK G +D A+ L
Sbjct: 489 CKEGLLDEALAL 500



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/390 (21%), Positives = 174/390 (44%), Gaps = 12/390 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P  F +  ++  L   +     + ++++M+   VE D      +I   C  G+VV     
Sbjct: 56  PHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSG 115

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             ++ + G   +      L++GL  EGKV +A      ++  G+R     Y  +I G+C+
Sbjct: 116 VSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCK 175

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           + +   A +L     +  + P+    + ++    +   +D  + L  +M  +   ++ D+
Sbjct: 176 IGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEM--VGKGISPDV 233

Query: 381 EKFFEF-----LVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL 434
             +        +VG+  R   A+D+  E+  +  +  +  Y IL+ AL + G+VK+A  +
Sbjct: 234 VTYSILVSGFCIVGQLNR---AIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENV 290

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
              M    + ++ + +S  +  +    ++  A      + +M   P V  Y+ +  GLCK
Sbjct: 291 LAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCK 350

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
           I  +D A+ L  + +      P    Y   I  +C+SG    + ++ +EM   G PP+ +
Sbjct: 351 IKRVDEALNLFEE-IHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVI 409

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKL 584
             + +I  +CK+G L+ A  +F  ++++ +
Sbjct: 410 TYNNLIDALCKNGHLDRAIALFNKMKDQAI 439



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 128/277 (46%), Gaps = 5/277 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++   +++L +M      PD++ YT ++  L  E  +     V   M K  V  DV+ Y
Sbjct: 247 GQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVY 306

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+ G C    V     +F  M + G+  D   Y ++I GL    +V +A +L +++  
Sbjct: 307 STLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQ 366

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                D   Y S+I  LC+  +    + LF+  +     PD  T N L+    + G +D 
Sbjct: 367 KNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDR 426

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
              L  +M+    ++  ++  F   L G  K  R+  AL+ F++L  KGY  +V  Y ++
Sbjct: 427 AIALFNKMKDQ--AIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVM 484

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           +  L + G + +AL L  +M       ++++F I I+
Sbjct: 485 INGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIR 521



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 6/190 (3%)

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           NI++      G+V  A     K+  L  + N+++ +  ++     G + EA   H+K++ 
Sbjct: 97  NIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLA 156

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
                S  +Y  L  G+CKIGE  AA+ L+R  +   +  P    Y++ I  +C+    +
Sbjct: 157 QGFRLSGISYGILINGVCKIGETRAAIRLLRR-IERWSIRPNVVIYSMIIDRLCKDTLVD 215

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD- 594
           +  ++  EM  +G  P+ V  S ++SG C  G L  A     +L    +L   N  +Y  
Sbjct: 216 EAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRA----IDLLNEMVLENINPDIYTY 271

Query: 595 EILIEHMKKK 604
            IL++ + K+
Sbjct: 272 TILVDALCKE 281


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 162/392 (41%), Gaps = 36/392 (9%)

Query: 180 SQGRIAEMLEIL-EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           S+GR+ E   ++ E M    C PD+F Y  +I  L  +  L +   +  EM+    E +V
Sbjct: 365 SRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNV 424

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + Y  LI   CK GR+     +  EM   G+ ++   Y  LI  L  + KV  A ++  D
Sbjct: 425 ITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGD 484

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +   G + D+  +NS+I GLC+V +F++A  L++  + + +  +  T N L+      G 
Sbjct: 485 MSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGA 544

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL 418
           M    KL+  M                                   +G     +  YN L
Sbjct: 545 MQEALKLVNDML---------------------------------FRGCPLDDIT-YNGL 570

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + AL   G ++K L LF  M    L  N++S +I I     +G+I  A E    +I    
Sbjct: 571 IKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGL 630

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P +  YN L  GLCK G    A+ L  D L      P    Y   I   C+ G  +   
Sbjct: 631 TPDIVTYNSLINGLCKTGRAQEALNLF-DKLQVEGICPDAITYNTLISWHCKEGMFDDAH 689

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
            +L+     G  PNEV    ++S   K G  E
Sbjct: 690 LLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 721



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 137/602 (22%), Positives = 247/602 (41%), Gaps = 82/602 (13%)

Query: 53  PFNVQKWDPHYLPNQ----KTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQ------FQ 102
           PF V    P +  N     KT S    P  F          RF  D    N        +
Sbjct: 6   PFTVMLKIPKFTKNLQYFFKTPSFSISPSGFN---------RFYNDTVFNNTNGLDSGTE 56

Query: 103 W----GPQVVTEL-SKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNA 157
           W     P  + EL + L R+TP  + ++L++  +   + + F WAG QKGY H F  Y  
Sbjct: 57  WERLLKPFDLPELRTSLTRITPYQLCKLLELPLDVPTSMELFQWAGTQKGYCHMFDVYYM 116

Query: 158 LAYCLSRNNLFRAADQVPELMDSQGRI-------------------AEMLEILEKMRRNL 198
           L   L     F+  D +   M  +G +                    +   +L  MR   
Sbjct: 117 LIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVY 176

Query: 199 -CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
            C+P   +Y  ++ VL A         V+ EM    +   V  +  ++  LC    V   
Sbjct: 177 SCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSA 236

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
             L ++M  +G + +  +Y  LI  L   G+V +   LL++++  G   D+  +N  I G
Sbjct: 237 CALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHG 296

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL----------- 366
           LC++ +  +A KL +  +     P+  T   L+     MG++D    LL           
Sbjct: 297 LCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLF 356

Query: 367 -----------------AQMEKLKFSVAA--DLEKFFEFLVG--KEERIMMALDVFEELK 405
                            A M +   SV    D+  +   ++G  K+  ++ A ++  E++
Sbjct: 357 NTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQ 416

Query: 406 GKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
            KG   +V  Y IL+    + G +++A  +  +M G  L +N++ ++  I    +   + 
Sbjct: 417 IKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQ 476

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTEFKYA 522
           +A      +      P +  +N L  GLCK+ + + A+ L +D L  G +A+  T   Y 
Sbjct: 477 DALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTIT---YN 533

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             I    R G  ++ ++++N+M   GCP +++  + +I  +C+ G +E+   +F ++  +
Sbjct: 534 TLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSK 593

Query: 583 KL 584
            L
Sbjct: 594 GL 595



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 116/497 (23%), Positives = 224/497 (45%), Gaps = 14/497 (2%)

Query: 116 RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVP 175
           +V P++  E+L    +PT+ +  F    K     +   S  AL   ++R+     A    
Sbjct: 199 KVVPNVFYEMLSKGISPTVYT--FGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQ 256

Query: 176 ELMDSQ---GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
            L+ +    GR+ E+L++LE+M    C PDV  +   I  L     +    ++ + M   
Sbjct: 257 TLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLR 316

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
               +   Y  L+ GLC+ G+V     L  ++    +++    +  LI G V  G++ +A
Sbjct: 317 GFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVL----FNTLINGYVSRGRLDEA 372

Query: 293 CDLLKD-LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
             ++ + ++  G   D+  YN++I GLC+      A +L          P+  T   L+ 
Sbjct: 373 KAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILID 432

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS- 410
              + GR++    +L +M     ++ A         + K+E++  AL++F ++  KG   
Sbjct: 433 RFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKP 492

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            +  +N L+  L ++ + ++AL L+  M    +  N+++++  I   +  G + EA +  
Sbjct: 493 DIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLV 552

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
           N ++          YN L K LC+ G I+  + L  D +      P      + I  +CR
Sbjct: 553 NDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSK-GLNPNNISCNILINGLCR 611

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +G  +  +E L +M   G  P+ V  +++I+G+CK G  +EA  +F  L+   +  +A  
Sbjct: 612 TGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDA-- 669

Query: 591 IVYDEILIEHMKKKTAD 607
           I Y+ ++  H K+   D
Sbjct: 670 ITYNTLISWHCKEGMFD 686



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/434 (22%), Positives = 182/434 (41%), Gaps = 58/434 (13%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           +G+  N  +Y  L + L R                 G++ E   +L K+      P+V  
Sbjct: 316 RGFTPNSFTYGVLMHGLCR----------------MGKVDEARMLLNKVP----NPNVVL 355

Query: 206 YTAMIRVLAAERNLDACLRVWEE-MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
           +  +I    +   LD    V  E M       D+  Y TLI+GLCK G +V   EL  EM
Sbjct: 356 FNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEM 415

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           +  G   +   Y +LI+    EG++ +A ++L ++   G   +   YN +I  LC+ ++ 
Sbjct: 416 QIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKV 475

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
             A  +F         PD  T N L+                                  
Sbjct: 476 QDALNMFGDMSSKGCKPDIFTFNSLI---------------------------------- 501

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNL 443
            F + K  +   AL +++++  +G  +  I YN L+ A L  G +++AL L   M     
Sbjct: 502 -FGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGC 560

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
            ++ ++++  I+    +G+I +       ++     P+  + N L  GLC+ G I  A+ 
Sbjct: 561 PLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALE 620

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
            +RD +    + P    Y   I  +C++G A++ + + +++  EG  P+ +  + +IS  
Sbjct: 621 FLRDMIHRGLT-PDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWH 679

Query: 564 CKHGTLEEARKVFT 577
           CK G  ++A  + +
Sbjct: 680 CKEGMFDDAHLLLS 693



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 168/395 (42%), Gaps = 22/395 (5%)

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI  L   G       L  +MK+ GI+   +++ ++++     G  G+A  LL D+
Sbjct: 113 VYYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDM 172

Query: 300 -----VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
                 +  +R+   + + ++ G C     +  Y++    +   ++P   T   ++    
Sbjct: 173 RGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEM----LSKGISPTVYTFGVVMKALC 228

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVP 413
            +  +D+   LL  M +      A + +     + K  R+   L + EE+   G    V 
Sbjct: 229 LVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVN 288

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            +N  +  L ++  + +A  L  +M       NS ++ + +      G + EA    NK+
Sbjct: 289 TFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKV 348

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
                 P+V  +N L  G    G +D A  ++ + + +V  GP  F Y   IL +C+ G 
Sbjct: 349 PN----PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGY 404

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
                E++NEM  +GC PN +  + +I   CK G LEEAR V   +  + L    N + Y
Sbjct: 405 LVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGL--ALNAVGY 462

Query: 594 DEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
           + ++    K +    V   L  FG    + +KGCK
Sbjct: 463 NCLISALCKDEK---VQDALNMFG---DMSSKGCK 491


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 178/408 (43%), Gaps = 17/408 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD-------- 232
           +G    M E++EKM     +P+V  +  +I  +   R +D  L V E+M           
Sbjct: 318 EGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISV 377

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMK-ENGILIDRAIYGVLIEGLVGEGKVGK 291
            VE DV+ Y TLI GLCK GR   G  L   M+ + G   D   Y  LI+G    G++ K
Sbjct: 378 SVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEK 437

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
             +L  ++   G   ++   N+++GG+CR  +   A   F    +  +  D  T   L+ 
Sbjct: 438 GKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALIN 497

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGY 409
               +   +   +L  +M  LK   + D   ++  + G  +  R+  A  V  ELK  G 
Sbjct: 498 AFCNVNNFEKAMELFNEM--LKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGI 555

Query: 410 SSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
               + YN L+G      +  +   +  +M    L+ ++++++  I    ++GD+  A +
Sbjct: 556 RPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQK 615

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
              K+I+   VP+VA Y  +    C  G  + AM + +D        P    Y + I  +
Sbjct: 616 VMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSL 675

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           C++ + +  + ++ +M   G  PN    +AI  G+     LE   KVF
Sbjct: 676 CKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLE---KVF 720



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 165/372 (44%), Gaps = 52/372 (13%)

Query: 182 GRIAEMLEILEKMR-RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           GR  E L ++E+MR +  C PD   Y  +I        ++    +++EM K+ V  +V+ 
Sbjct: 397 GRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVT 456

Query: 241 YVTLIMGLCKGGRVV-----------------------------------RGHELFREMK 265
             TL+ G+C+ GRV                                    +  ELF EM 
Sbjct: 457 VNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEML 516

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           ++G   D  +Y  LI G    G++  A  +L +L   G R D   YN++IGG CR  +F 
Sbjct: 517 KSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFH 576

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF-----SVAADL 380
           + +++ +   +  L PD  T N L+   ++ G +    K++ +M K        +  A +
Sbjct: 577 RVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVI 636

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVP----IYNILMGALLEIGEVKKALYLFG 436
             +     G E     A+++F+++K    S VP    IYNIL+ +L +  +VK A+ L  
Sbjct: 637 NAYCLNGNGNE-----AMEIFKDMKAA--SKVPPNTVIYNILINSLCKNNKVKSAVSLME 689

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            M+   +  N+ +++   +   +  D+ +  E  +++IE +  P       LT+ L  +G
Sbjct: 690 DMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVG 749

Query: 497 EIDAAMMLVRDC 508
           EI+     V  C
Sbjct: 750 EIERLKKFVAGC 761



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 159/344 (46%), Gaps = 15/344 (4%)

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           LI  LC+  +  RG +LF EM + G +++ A    L+ GL  EG   +  +L++ +V+  
Sbjct: 276 LITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMD 335

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVT--------VQDDLAPDFSTVNPLLVCCAE 355
            + ++  +  +I  +C+ ++ D A ++ E          +   + PD    N L+    +
Sbjct: 336 IQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCK 395

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SV 412
           +GR      L+ +M   K   A D   +   + G  K   I    ++F+E+  +G + +V
Sbjct: 396 VGRQQEGLGLMERMRSQK-GCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNV 454

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
              N L+G +   G V  A+  F + +   ++ ++++++  I       +  +A E  N+
Sbjct: 455 VTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNE 514

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEI-DAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           +++    P    Y  L  G  + G + DA+ +L    L  +   P    Y   I   CR+
Sbjct: 515 MLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAE--LKKLGIRPDTVCYNTLIGGFCRT 572

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
            +  ++ E+L EM + G  P+ +  + +I+   K+G L+ A+KV
Sbjct: 573 NKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKV 616



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 149/333 (44%), Gaps = 30/333 (9%)

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           E+G+LI     G LI  L    K  +  DL  +++  G   +    NS++ GL R   F+
Sbjct: 263 EHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFN 322

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +  +L E  V+ D+ P+  T   L+    +  R+D+  ++L +M                
Sbjct: 323 RMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMS--------------- 367

Query: 386 FLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL-NLE 444
              G +E   +++ V  +        V IYN L+  L ++G  ++ L L  +MR      
Sbjct: 368 ---GGKESGGISVSVEPD--------VVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCA 416

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            ++++++  I    ++G+I +  E  +++ +    P+V   N L  G+C+ G + +A+  
Sbjct: 417 PDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNF 476

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
             +       G     Y   I   C     EK +E+ NEM + GC P+ ++   +ISG  
Sbjct: 477 FVEAQRRGMKGDA-VTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFS 535

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           + G + +A  V   L  +KL    +T+ Y+ ++
Sbjct: 536 QAGRMADASFVLAEL--KKLGIRPDTVCYNTLI 566



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 17/228 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K+ G + +   YN L     R N F              R+ EML+ +E+      KPD 
Sbjct: 551 KKLGIRPDTVCYNTLIGGFCRTNKFH-------------RVFEMLKEMEEAG---LKPDT 594

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  +I   +   +L    +V  +M K  V   V  Y  +I   C  G      E+F++
Sbjct: 595 ITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKD 654

Query: 264 MKE-NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           MK  + +  +  IY +LI  L    KV  A  L++D+   G   +   YN+I  GL   K
Sbjct: 655 MKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEK 714

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
             +K ++  +  ++    PD+ T+  L    + +G ++   K +A  E
Sbjct: 715 DLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIERLKKFVAGCE 762


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 191/426 (44%), Gaps = 15/426 (3%)

Query: 180 SQGRIAEMLEILEKM-----RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
           ++ R  E LE+L  M     RR  C P+V +Y+ +I     E  +D    ++ EM    +
Sbjct: 173 NEKRAEEALELLHMMADDHGRR--CPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGI 230

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
             DV+ Y T+I GLCK     R   +F++M +NG   +   Y  LI G +  GK  +   
Sbjct: 231 PPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQ 290

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           +L+++   G + D   Y S++  LC+  +  +A   F+  ++  + P  ST   L+   A
Sbjct: 291 MLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYA 350

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVP 413
             G +      L  M +   S    +   F     K   I  A+D+F +++  G S +V 
Sbjct: 351 TKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVV 410

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHN 471
            Y  L+ AL ++G V  A   F +M    +  N + F+  +   C V+  +  E  E   
Sbjct: 411 NYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAE--ELVY 468

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           ++++    P+   +N L   LC +G +     L+ D + +V   P  F Y   I   C +
Sbjct: 469 EMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLI-DLMEHVGVRPDAFSYTPLISGYCLT 527

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           G  ++  +V + M   G  P EV  + ++ G C    +++A  +F  +  RK +T    +
Sbjct: 528 GRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREML-RKGVTPG-VV 585

Query: 592 VYDEIL 597
            Y+ IL
Sbjct: 586 TYNTIL 591



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 197/440 (44%), Gaps = 15/440 (3%)

Query: 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEIL-EKMRRNLCKPDVFAYT 207
           +H FA++  +     R +   A +Q+ + +    R+ E +++L ++M    C PD  +YT
Sbjct: 107 EHGFAAFGLILKTGWRMDHI-AINQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYT 165

Query: 208 AMIRVLAAERNLDACLRVWEEMKKD---LVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            +++ L  E+  +  L +   M  D       +V++Y  +I G    G+V + + LF EM
Sbjct: 166 ILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEM 225

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            + GI  D   Y  +I+GL       +A  + + ++D+G++ +   YN +I G   + ++
Sbjct: 226 IDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKW 285

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN----FFKLLAQMEKLKFSVAADL 380
            +  ++ E      L PD  T   LL    + GR       F  ++ +  K K S    L
Sbjct: 286 KEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGIL 345

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
              +    G    +   LD+  E    G S    I+NI   A  + G + KA+ +F KMR
Sbjct: 346 IHGYA-TKGALSEMHSFLDLMVE---NGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMR 401

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              L  N +++   I    + G + +A    N++I     P++  +N L  GLC + + +
Sbjct: 402 QHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWE 461

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A  LV + L +    P    +   I ++C  G   +   +++ M   G  P+    + +
Sbjct: 462 RAEELVYEML-DQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPL 520

Query: 560 ISGMCKHGTLEEARKVFTNL 579
           ISG C  G  +EA KVF  +
Sbjct: 521 ISGYCLTGRTDEAEKVFDGM 540



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 178/412 (43%), Gaps = 18/412 (4%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           + ++M  N  KP+ + Y  +I    +       +++ EEM    ++ D   Y +L+  LC
Sbjct: 256 VFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLC 315

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K GR       F  M   GI    + YG+LI G   +G + +    L  +V++G   D  
Sbjct: 316 KNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHH 375

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
           I+N       +    DKA  +F    Q  L+P+      L+    ++GR+D+      QM
Sbjct: 376 IFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQM 435

Query: 370 EKLKFSVAADLEKFFEFLVG-----KEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
             +   V  ++  F   + G     K ER   A ++  E+  +G   +   +N L+  L 
Sbjct: 436 --INEGVTPNIVVFNSLVYGLCTVDKWER---AEELVYEMLDQGICPNAVFFNTLICNLC 490

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
            +G V +   L   M  + +  ++ S++  I  +  +G   EA +  + ++ +   P+  
Sbjct: 491 NVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEV 550

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILH-VCRSGEAEKIIEVL 541
            YN L  G C    ID A  L R+ L   V  G   +    TILH + ++    +  E+ 
Sbjct: 551 TYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYN---TILHGLFQTKRFSEAKELY 607

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
             M   G   +    + I++G+CK   ++EA K+F +L  + L  + N I +
Sbjct: 608 LNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGL--QLNIITF 657



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 172/412 (41%), Gaps = 41/412 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I + ++I  KMR++   P+V  Y A+I  L     +D     + +M  + V  +++ +
Sbjct: 388 GMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVF 447

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +L+ GLC   +  R  EL  EM + GI  +   +  LI  L   G+V +   L+  +  
Sbjct: 448 NSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEH 507

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G R D   Y  +I G C   + D+A K+F+  V   L+P   T N LL       R+D+
Sbjct: 508 VGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDD 567

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
            + L  +M  L+  V   +  +   L G  + +R   A +++  +   G    +  YNI+
Sbjct: 568 AYCLFREM--LRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNII 625

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L +   V +A  +F  +    L++N ++F+I I   ++ G   +A +    I     
Sbjct: 626 LNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGL 685

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           VP+V  Y  + + L +                                     G  E+  
Sbjct: 686 VPNVVTYRLVAENLIE------------------------------------EGSLEEFD 709

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            + + M + G  PN  + +A++  +   G +  A    + L ER    EA+T
Sbjct: 710 SLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEAST 761



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 100/475 (21%), Positives = 187/475 (39%), Gaps = 57/475 (12%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
             G+K N  +YN    CL    L            S G+  E++++LE+M     KPD +
Sbjct: 262 DNGFKPNNYTYN----CLIHGYL------------SIGKWKEVVQMLEEMSARGLKPDCY 305

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y +++  L            ++ M +  ++  V  Y  LI G    G +   H     M
Sbjct: 306 TYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLM 365

Query: 265 KENGI------------------LIDRAI-----------------YGVLIEGLVGEGKV 289
            ENG+                  +ID+A+                 YG LI+ L   G+V
Sbjct: 366 VENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRV 425

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
             A      +++ G   ++ ++NS++ GLC V ++++A +L    +   + P+    N L
Sbjct: 426 DDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTL 485

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGK 407
           +     +GR+    +L+  ME +   V  D   +   + G     R   A  VF+ +   
Sbjct: 486 ICNLCNVGRVMEGRRLIDLMEHV--GVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSI 543

Query: 408 GYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           G S   + YN L+        +  A  LF +M    +    ++++  +    ++    EA
Sbjct: 544 GLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEA 603

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
            E +  +I       +  YN +  GLCK   +D A  + +  L +         + + I 
Sbjct: 604 KELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQS-LCSKGLQLNIITFTIMIG 662

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            + + G  E  +++   +   G  PN V    +   + + G+LEE   +F+ + +
Sbjct: 663 ALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEK 717



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 162/374 (43%), Gaps = 12/374 (3%)

Query: 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
            D V  ++  Y  LI   C+ G +  G   F  + + G  +D      L++GL    +VG
Sbjct: 83  SDKVAPNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVG 142

Query: 291 KACD-LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD---LAPDFSTV 346
           +A D LL+ + + G   D   Y  ++ GLC  K+ ++A +L  +   D      P+  + 
Sbjct: 143 EAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSY 202

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL 404
           + ++      G++D  + L  +M  +   +  D+  +   + G  K +    A  VF+++
Sbjct: 203 SIVINGFFTEGQVDKPYNLFLEM--IDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQM 260

Query: 405 KGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
              G+  +   YN L+   L IG+ K+ + +  +M    L+ +  ++   +    ++G  
Sbjct: 261 IDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRC 320

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
            EA    + +I     P V+ Y  L  G    G + + M    D +      P    + +
Sbjct: 321 REARFFFDSMIRKGIKPKVSTYGILIHGYATKGAL-SEMHSFLDLMVENGLSPDHHIFNI 379

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
                 + G  +K +++ N+M Q G  PN V   A+I  +CK G +++A   F  +    
Sbjct: 380 FFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEG 439

Query: 584 LLTEANTIVYDEIL 597
           +    N +V++ ++
Sbjct: 440 V--TPNIVVFNSLV 451



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/210 (19%), Positives = 91/210 (43%), Gaps = 9/210 (4%)

Query: 150 HNFASYNAL--AYCLSRNNLFRAA-------DQVPELMDSQGRIAEMLEILEKMRRNLCK 200
           H + S + +  AYCL R  L +         + +   +    R +E  E+   M  +  K
Sbjct: 557 HGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTK 616

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
            D++ Y  ++  L     +D   ++++ +    ++ +++ +  +I  L KGGR     +L
Sbjct: 617 CDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDL 676

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F  +  NG++ +   Y ++ E L+ EG + +   L   +  +G   +  + N+++  L  
Sbjct: 677 FAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLH 736

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
                +A        + + + + ST + L+
Sbjct: 737 RGDISRAGAYLSKLDERNFSVEASTTSLLM 766


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/427 (23%), Positives = 198/427 (46%), Gaps = 47/427 (11%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           LE++E+M+ +  +P+V  YTA+I      + +D    ++E M +  V  DV+    L+ G
Sbjct: 242 LEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDG 301

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC+ G+    + LFREM + G+  +   Y  LI+ L    +  ++  LL ++V  G   D
Sbjct: 302 LCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMD 361

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           L +Y +++  L +  + ++A  +      D++ P+F T   L+      G +D   ++L 
Sbjct: 362 LVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLL 421

Query: 368 QMEK-------LKFSV-------------AAD--------------------LEKFFEFL 387
           QME+       + FS              AAD                    ++ FF+F 
Sbjct: 422 QMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKF- 480

Query: 388 VGKEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
            G+E     ALDV+ ++  +G  +   + + L+  L + G ++ A  LF  M    L ++
Sbjct: 481 QGQEA----ALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLD 536

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
            ++++  +    ++G++  A +   +++E +  P    YN     LC +G+   A   ++
Sbjct: 537 HVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLK 596

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
           + + N    P +  Y   I   CR G+  K +++L EM +    PN +  + ++ G+ + 
Sbjct: 597 E-MRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEA 655

Query: 567 GTLEEAR 573
           G +++A+
Sbjct: 656 GVVKKAK 662



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 110/504 (21%), Positives = 214/504 (42%), Gaps = 62/504 (12%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQ-------------------GRIAEMLEIL 191
           NF +Y  L     R      A+QV   M+ +                   G + +  + +
Sbjct: 396 NFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYM 455

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
            KM+ +   P+V  Y  +I      +  +A L V+ +M  + VEA+     +L+ GL K 
Sbjct: 456 RKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKN 515

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           G +     LF++M E G+L+D   Y  L++GL   G +  A  + ++L++     D  +Y
Sbjct: 516 GNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVY 575

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N  I  LC + +F +A    +      L PD +T N ++      G+     KLL +M+ 
Sbjct: 576 NVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMK- 634

Query: 372 LKFSVAADLEKFFEFLVG---------------------------KEERIMMA------- 397
            + S+  +L  +   +VG                             +R++ A       
Sbjct: 635 -RNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRP 693

Query: 398 ---LDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
              L++ E + G G ++ + +YN L+  L   G  + A  +  +M    +  ++++F+  
Sbjct: 694 DVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNAL 753

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
           I  H +S  +  A   + +++     P++A +N L  GL   G I  A  ++ D +  V 
Sbjct: 754 ILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSD-MKKVG 812

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
             P    Y + +    +     + + +  EM  +G  P     ++++S   K G + +A+
Sbjct: 813 LEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAK 872

Query: 574 KVFTNLRERKLLTEANTIVYDEIL 597
           ++F+ ++ R +L  ++T  YD +L
Sbjct: 873 ELFSEMKRRGVLHTSST--YDILL 894



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 105/469 (22%), Positives = 192/469 (40%), Gaps = 46/469 (9%)

Query: 177 LMD---SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD    +G+I E  ++L   + +   P+   YT ++       N+D   +V  +M++  
Sbjct: 368 LMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKS 427

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE------------ 281
           V  +V+ + ++I GL K G + +  +  R+MK++GI  +   YG LI+            
Sbjct: 428 VIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAAL 487

Query: 282 -----------------------GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
                                  GL   G +  A  L KD+ + G   D   Y +++ GL
Sbjct: 488 DVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGL 547

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
            +      A+K+ +  ++ +L+PD    N  + C   +G+       L +M      +  
Sbjct: 548 FKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNT--GLEP 605

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
           D   +   +    +E +   AL + +E+K      ++  Y  L+  LLE G VKKA +L 
Sbjct: 606 DQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLL 665

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M        SL+    +Q    S       E H  ++       +  YN L   LC  
Sbjct: 666 NEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCH 725

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G    A +++ + L      P    +   IL  C+S   +    +  +M  +G  PN   
Sbjct: 726 GMARNATVVLDEMLTR-GIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIAT 784

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
            + ++ G+   G + EA  V +++++  L  E N + YD ++  + KK 
Sbjct: 785 FNTLLGGLESAGRIGEADTVLSDMKKVGL--EPNNLTYDILVTGYAKKS 831



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/429 (20%), Positives = 173/429 (40%), Gaps = 78/429 (18%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREM-----KENGILIDRAIYGVLIEGLVGEGK 288
           V AD ++Y   +  L + G       +  EM       +G+ +  A+ G+   GLVGE  
Sbjct: 111 VAADTVSYNIFLAALSEQGHGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAA 170

Query: 289 V-------GKACD-------------------------LLKDLVDSGYRADLGIYNSIIG 316
                   G+  D                         +++ +   G   D+  YNS++ 
Sbjct: 171 ALAEMLVRGRGIDGLDVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVA 230

Query: 317 GL-----------------------------------CRVKQFDKAYKLFEVTVQDDLAP 341
           G                                    C+ K  D+A+ L+E  V+  + P
Sbjct: 231 GFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLP 290

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALD 399
           D  T++ L+      G+    + L  +M+K+   VA +   +   +  + K  R   +L 
Sbjct: 291 DVVTLSALVDGLCRDGQFSEAYALFREMDKI--GVAPNHVTYCTLIDSLAKARRGSESLG 348

Query: 400 VFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV 458
           +  E+  +G    + +Y  LM  L + G++++A  +    +  N+  N +++++ +  H 
Sbjct: 349 LLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHC 408

Query: 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE 518
            +G+I  A +   ++ E S +P+V  ++ +  GL K G +  A   +R  + +    P  
Sbjct: 409 RAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRK-MKDSGIAPNV 467

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
             Y   I    +    E  ++V  +M  EG   N  +  ++++G+ K+G +E A  +F +
Sbjct: 468 VTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKD 527

Query: 579 LRERKLLTE 587
           + ER LL +
Sbjct: 528 MDERGLLLD 536



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 20/223 (8%)

Query: 115 RRVTPDLV---AEVLKVENNPTLASKFFHWAGK-QKGYKHNFASYNALAYCLSRNNLFRA 170
           R + PD +   A +L    +  L + F  +A    +G   N A++N L   L        
Sbjct: 741 RGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGL-------- 792

Query: 171 ADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK 230
                   +S GRI E   +L  M++   +P+   Y  ++   A + N    LR++ EM 
Sbjct: 793 --------ESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMV 844

Query: 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
                     Y +L+    K G + +  ELF EMK  G+L   + Y +L+ G        
Sbjct: 845 SKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGI 904

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
           +   LLKD+ + G++   G  +S+     R     +A +L + 
Sbjct: 905 EVRILLKDMKELGFKPSKGTISSMSRAFSRPGMTGEARRLLKT 947


>gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 917

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 174/386 (45%), Gaps = 2/386 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+ +  L +L  M  N CKP +  +  +I     E N++   + ++E++   +  + + 
Sbjct: 336 KGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIV 395

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G  K   + + + LF EM+   I+ D   +  L+ G    GK      LL+DL 
Sbjct: 396 YNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLS 455

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            SG   D  + +  + GLC   ++D+A KL E  +   + P     N ++      G  +
Sbjct: 456 VSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLGKGIPPSVVAFNSIIAAYGNAGLEE 515

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILM 419
             F     M K   + ++         + ++  +  A     ++  KG+    + + +L+
Sbjct: 516 RAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLL 575

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
                IG V  A  L+ +M+G  +  ++++F+  I     SG + +A +  + ++    V
Sbjct: 576 DGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFV 635

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+   YN L  G CK+G+++ A+ LVR+ +      P  F   + I  +C+ G  +  IE
Sbjct: 636 PNNFVYNSLIGGFCKVGKLNEALKLVRE-MNKRGLLPDIFTVNMIICGLCKQGRMKLAIE 694

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCK 565
              +M + G  P+ V  + +I G CK
Sbjct: 695 TFMDMCRMGLSPDIVTYNTLIDGYCK 720



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 112/445 (25%), Positives = 182/445 (40%), Gaps = 43/445 (9%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN--------------------------- 218
           E LEIL KMR     P+  A + + R+L    +                           
Sbjct: 236 EALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLI 295

Query: 219 LDACLRVWEEMKKDLV--------EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
           L+ C + W  + + L+        E DV +Y  +I   C  G+      L   M ENG  
Sbjct: 296 LEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCK 355

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
              A +  +I+    EG V  A     ++ D G   +  +YN +I G  + +   +A  L
Sbjct: 356 PSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLL 415

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK---LKFSVAADLEKFFEFL 387
           FE     D+ PD  T N L+      G+ ++  +LL  +     L  S   D+       
Sbjct: 416 FEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCW 475

Query: 388 VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
            G+ +    A+ + E L GKG   SV  +N ++ A    G  ++A Y +G M    L  +
Sbjct: 476 AGRYDE---AMKLLENLLGKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPS 532

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           S + S  +   V  G + EA      +I+     +  A+  L  G  +IG ++ A  L  
Sbjct: 533 SSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWN 592

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
           +  G     P    +A  I  +C SG      +V ++M ++G  PN  + +++I G CK 
Sbjct: 593 EMKGR-GVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKV 651

Query: 567 GTLEEARKVFTNLRERKLLTEANTI 591
           G L EA K+   + +R LL +  T+
Sbjct: 652 GKLNEALKLVREMNKRGLLPDIFTV 676



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 126/265 (47%), Gaps = 14/265 (5%)

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           MA+  L+ G  + G V     L+ EMK  G+  D   +   I GL   G +  A D+  D
Sbjct: 569 MAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSD 628

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           ++  G+  +  +YNS+IGG C+V + ++A KL     +  L PD  TVN ++    + GR
Sbjct: 629 MLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGR 688

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIY 415
           M     +   M+  +  ++ D+  +   + G  K   +  A D+  ++   G+   +  Y
Sbjct: 689 MK--LAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTY 746

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHV--ESGDILEACECHN 471
           NI +     + ++ +A+ +  ++  + +  N+++++  I   C+V  +   IL A     
Sbjct: 747 NIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINAVCNVILDHAMILTA----- 801

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIG 496
           K+++M+ VP+    N L    CK G
Sbjct: 802 KLLKMAFVPNTVTVNVLLSQFCKQG 826



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 1/194 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G + +  ++   M R    P+ F Y ++I        L+  L++  EM K  +  D+  
Sbjct: 616 SGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFT 675

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
              +I GLCK GR+    E F +M   G+  D   Y  LI+G      VG A DL+  + 
Sbjct: 676 VNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMS 735

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           DSG+  DL  YN  I G C V++ ++A  + E  +   + P+  T N ++     +  +D
Sbjct: 736 DSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINAVCNV-ILD 794

Query: 361 NFFKLLAQMEKLKF 374
           +   L A++ K+ F
Sbjct: 795 HAMILTAKLLKMAF 808



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 129/306 (42%), Gaps = 36/306 (11%)

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           + AY  F++  +DD      +      CC           LLA  E+L+F +A D+  + 
Sbjct: 147 ETAYAFFKLAFKDDSEETVRS------CCV-------LAHLLAA-EQLRF-LAQDIVSWV 191

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
              +G      +A  ++E  +    S   + + LM A ++     +AL +  KMR + + 
Sbjct: 192 VARIGPGRSKNLAAFMWEGHRVYE-SDYSVLDTLMRAFVKSEMHFEALEILSKMREVGVT 250

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG--EIDAAM 502
            N  + SI  +  + +GD     +    ++     P+   +N L    C+ G   I  A+
Sbjct: 251 PNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEAL 310

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
           + V   +G     P  + Y + I   C  G++   + +LN M + GC P+      II  
Sbjct: 311 LHV---MGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDA 367

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK-------------KTADLV 609
            CK G +E ARK F  + +  L    NTIVY+ ++  ++K              +T D+V
Sbjct: 368 FCKEGNVELARKYFDEIEDMGL--SQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIV 425

Query: 610 LSGLKF 615
             G+ F
Sbjct: 426 PDGITF 431



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 146/360 (40%), Gaps = 10/360 (2%)

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
            +NL A +  WE  +  + E+D     TL+    K        E+  +M+E G+  + + 
Sbjct: 200 SKNLAAFM--WEGHR--VYESDYSVLDTLMRAFVKSEMHFEALEILSKMREVGVTPNPSA 255

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
             +L   L+  G  G    L  D+V  G   +   +N +I   CR         L  V  
Sbjct: 256 ISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHVMG 315

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKLKFSVAADLEKFFEFLVGKEER 393
           +    PD  + N ++      G+      LL  M     K S+A        F   KE  
Sbjct: 316 KFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFC--KEGN 373

Query: 394 IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           + +A   F+E++  G S +  +YNI++   ++  ++ +A  LF +MR  ++  + ++F+ 
Sbjct: 374 VELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNT 433

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
            +  H   G   +       +     +   +  +    GLC  G  D AM L+ + LG  
Sbjct: 434 LVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLGK- 492

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              P+   +   I     +G  E+       M + G  P+   CS+++  + + G+L+EA
Sbjct: 493 GIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEA 552



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 3/174 (1%)

Query: 177 LMDSQGRIA--EMLEIL-EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L+D   RI    M E L  +M+     PD  A+ A I  L     +     V+ +M +  
Sbjct: 574 LLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKG 633

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
              +   Y +LI G CK G++    +L REM + G+L D     ++I GL  +G++  A 
Sbjct: 634 FVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAI 693

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
           +   D+   G   D+  YN++I G C+      A  L          PD +T N
Sbjct: 694 ETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYN 747


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 112/465 (24%), Positives = 203/465 (43%), Gaps = 46/465 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADV 238
           S   IA   E+ + M +     DV  +  ++     E  L+  L + E M  +  V  D 
Sbjct: 181 SSFSIASAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDN 240

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + Y T++  + K GR+    +L  +MK NG++ +R  Y  L+ G    G + +A  +++ 
Sbjct: 241 VTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVEL 300

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +  +    DL  YN +I G+C      +  +L +V     L PD  T N L+  C E+G 
Sbjct: 301 MKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGL 360

Query: 359 MDNFFKLLAQMEKLKF---SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPI 414
                KL+ QME        V  ++    ++L  +E+R  +   V E ++  G+S  +  
Sbjct: 361 SLEAKKLMEQMENDGVKPNQVTHNIS--LKWLCKEEKREEVTRKVKELVEMHGFSPDIVT 418

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV------ESGDILEACE 468
           Y+ L+ A L++G++  AL +  +M    +++N+++ +  +          E+ ++L++  
Sbjct: 419 YHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAH 478

Query: 469 CHNKII--------------------------EMSQV---PSVAAYNCLTKGLCKIGEID 499
               I+                          EM ++   P+V  +N L  GLC  G+ +
Sbjct: 479 KRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTE 538

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            AM    D L      P +  +   IL  C+ G  EK  E  NE  +    P+   C+ +
Sbjct: 539 LAMEKF-DELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNIL 597

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           ++G+CK G  E+A   F  L   +   E +T+ Y+ ++    K K
Sbjct: 598 LNGLCKEGMTEKALNFFNTLITER---EVDTVTYNTMISAFCKDK 639



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 198/437 (45%), Gaps = 24/437 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K+ G   N  +YN L Y   +                 G + E  +I+E M++    PD+
Sbjct: 267 KRNGLVPNRVTYNNLVYGYCK----------------LGSLKEAFQIVELMKQTNILPDL 310

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  +I  +    ++   L + + MK   ++ DV+ Y TLI G  + G  +   +L  +
Sbjct: 311 CTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLMEQ 370

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD-SGYRADLGIYNSIIGGLCRVK 322
           M+ +G+  ++  + + ++ L  E K  +    +K+LV+  G+  D+  Y+++I    +V 
Sbjct: 371 MENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVG 430

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
               A ++     Q  +  +  T+N +L    +  ++D    LL    K  + V  D   
Sbjct: 431 DLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIV--DEVT 488

Query: 383 FFEFLVG--KEERIMMALDVFEELKG-KGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
           +   ++G  +EE++  A ++++E+K  K   +V  +N L+G L   G+ + A+  F ++ 
Sbjct: 489 YGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDELA 548

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              L  +  +F+  I  + + G + +A E +N+ I+ S  P     N L  GLCK G  +
Sbjct: 549 ESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTE 608

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A+      +           Y   I   C+  + ++  ++L+EM ++   P+    ++I
Sbjct: 609 KALNFFNTLI--TEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNSI 666

Query: 560 ISGMCKHGTLEEARKVF 576
           I+ + + G L EA ++ 
Sbjct: 667 ITSLMEDGKLSEADELL 683



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 119/263 (45%), Gaps = 8/263 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G ++  LE++ +M +   K +      ++  L  ER +D    + +   K     D + Y
Sbjct: 430 GDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTY 489

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLIMG  +  +V +  E++ EMK   I      +  LI GL   GK   A +   +L +
Sbjct: 490 GTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAE 549

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD- 360
           SG   D   +NSII G C+  + +KA++ +  +++    PD  T N LL    + G  + 
Sbjct: 550 SGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEK 609

Query: 361 --NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNI 417
             NFF  L    ++       +   F     K++++  A D+  E++ K        YN 
Sbjct: 610 ALNFFNTLITEREVDTVTYNTMISAF----CKDKKLKEAYDLLSEMEEKRLEPDRFTYNS 665

Query: 418 LMGALLEIGEVKKALYLFGKMRG 440
           ++ +L+E G++ +A  L  K  G
Sbjct: 666 IITSLMEDGKLSEADELLKKFSG 688



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/374 (20%), Positives = 159/374 (42%), Gaps = 38/374 (10%)

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCK---GGRVVRGHELFREMKENGILIDRAIYG 277
             L+V+++M +  ++ +++   TL++GL +      +    E+F +M + G+ +D   + 
Sbjct: 149 VALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSIASAREVFDDMVKIGVSLDVKTFN 208

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDS-GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
           VL+ G   EGK+  A  +L+ +V       D   YN+I+  + +  +      L     +
Sbjct: 209 VLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKR 268

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
           + L P+  T N L+    ++G +   F+++  M++   ++  DL                
Sbjct: 269 NGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQT--NILPDL---------------- 310

Query: 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
                             YNIL+  +   G +++ L L   M+ L L+ + ++++  I  
Sbjct: 311 ----------------CTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDG 354

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
             E G  LEA +   ++      P+   +N   K LCK  + +     V++ +      P
Sbjct: 355 CFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSP 414

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
               Y   I    + G+    +E++ EM Q+G   N +  + I+  +CK   ++EA  + 
Sbjct: 415 DIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLL 474

Query: 577 TNLRERKLLTEANT 590
            +  +R  + +  T
Sbjct: 475 DSAHKRGYIVDEVT 488



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS---FSIAIQCHVESGDILEAC 467
           S  +++I + A L  G+   AL +F KM  L L+ N L+     I +  +  S  I  A 
Sbjct: 130 SKALFDIALSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSIASAR 189

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
           E  + ++++     V  +N L  G C  G+++ A+ ++   +      P    Y   +  
Sbjct: 190 EVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTILKA 249

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
           + + G    + ++L +M + G  PN V  + ++ G CK G+L+EA ++   +++  +L
Sbjct: 250 MSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNIL 307


>gi|449504220|ref|XP_004162287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Cucumis sativus]
          Length = 566

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 117/480 (24%), Positives = 206/480 (42%), Gaps = 60/480 (12%)

Query: 134 LASKFFHWAGK-QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
           L   FFH     +KG K +      L Y L +    R A +V E+M   G I        
Sbjct: 78  LNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGII-------- 129

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
                   PD  +YT ++  L  + N+   +++ ++M++     +   Y +L+ GLC  G
Sbjct: 130 --------PDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHG 181

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
            + +  +L   + + G++ +   Y  L+E    E    +A  LL +++  G + +L  YN
Sbjct: 182 NLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYN 241

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
            ++ GLC+  + + A +LF        +P+  + N LL      GR +    LLA+M+  
Sbjct: 242 VLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMD-- 299

Query: 373 KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKAL 432
                           G E                   S   YNIL+G+L   G  + AL
Sbjct: 300 ----------------GDERS----------------PSTVTYNILIGSLTLHGRTEHAL 327

Query: 433 YLFGKMRGLNLEVNSLSFS--IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
            +  +M     +  + S++  IA  C     D++   +C ++++     P+   YN +  
Sbjct: 328 EVLEEMIRARFKPTASSYNPIIARLCKDRKVDLV--VKCLDQMMYRHCNPNEGTYNAIAT 385

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
            LC+ G +  A  +++  LGN     T+  Y + I  +CR G      ++L EMT+ G  
Sbjct: 386 -LCEEGMVQEAFSIIQS-LGNKQHFSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFT 443

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVL 610
           P+    S++I G+C  G L EA ++F+ + E   L   N   Y+ +++   K +  DL L
Sbjct: 444 PDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENIKLDTEN---YNSLILGCCKSRRTDLAL 500



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/409 (22%), Positives = 172/409 (42%), Gaps = 34/409 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ GY  N A+YN+L   L  +                G + + L++L+++ +    P+ 
Sbjct: 159 EEYGYPTNTATYNSLVRGLCMH----------------GNLTQSLQLLDRLIQKGLVPNA 202

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           + Y+ ++     ER  D   ++ +E+     + ++++Y  L+ GLCK GR     +LFRE
Sbjct: 203 YTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTEDAMQLFRE 262

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +   G   +   Y +L+  L  EG+  +A  LL ++           YN +IG L    +
Sbjct: 263 LPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGR 322

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-------EKLKFSV 376
            + A ++ E  ++    P  S+ NP++    +  ++D   K L QM        +  ++ 
Sbjct: 323 TEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVVKCLDQMMYRHCNPNEGTYNA 382

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGK-GYSSVPIYNILMGALLEIGEVKKALYLF 435
            A L         +E  +  A  + + L  K  +S+   Y I++ +L   G    A  L 
Sbjct: 383 IATL--------CEEGMVQEAFSIIQSLGNKQHFSTQEFYKIVITSLCRKGNTYPAFQLL 434

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M       +S ++S  I+     G + EA E  + ++E +       YN L  G CK 
Sbjct: 435 YEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFS-VMEENIKLDTENYNSLILGCCKS 493

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
              D A+ +    +G       E  Y + +  +    E +   EVL E+
Sbjct: 494 RRTDLALDVFEIMVGK-GYLANETTYTILVEGIIHEKEMDLATEVLREL 541



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 106/278 (38%), Gaps = 54/278 (19%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS-------------------QGRIAE 186
           KG+  N  SYN L   L     +  A+ +   MD                     GR   
Sbjct: 266 KGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGRTEH 325

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK--------------KD 232
            LE+LE+M R   KP   +Y  +I  L  +R +D  ++  ++M                 
Sbjct: 326 ALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVVKCLDQMMYRHCNPNEGTYNAIAT 385

Query: 233 LVEADVMA--------------------YVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           L E  ++                     Y  +I  LC+ G      +L  EM + G   D
Sbjct: 386 LCEEGMVQEAFSIIQSLGNKQHFSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPD 445

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              Y  LI GL  EG + +A ++   +++   + D   YNS+I G C+ ++ D A  +FE
Sbjct: 446 SFTYSSLIRGLCMEGMLNEAIEIF-SVMEENIKLDTENYNSLILGCCKSRRTDLALDVFE 504

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           + V      + +T   L+        MD   ++L +++
Sbjct: 505 IMVGKGYLANETTYTILVEGIIHEKEMDLATEVLRELQ 542


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 129/554 (23%), Positives = 229/554 (41%), Gaps = 78/554 (14%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           R + P  VA V++ +N+P  A K F+    + G+KH   +Y  +   L  +  F A + V
Sbjct: 3   RALQPKHVAAVIRYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDV 62

Query: 175 PELM----DSQ----------------GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
              M    DS+                G++ E + + E+M    C+P V +Y A++ +L 
Sbjct: 63  LAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILV 122

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR--------------------- 253
                    +V+  MK   +  DV  +   +   C  GR                     
Sbjct: 123 EYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAV 182

Query: 254 ----VVRG----------HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
               V+ G          + LF EM + GI  D   +  LI  L  +G V ++  L   +
Sbjct: 183 SYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKV 242

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G   +L  +N  I GLCR    D+A +L E  V + L PD  + N L+    +  ++
Sbjct: 243 MKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKL 302

Query: 360 DNFFKLLAQM-----EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP- 413
                 L +M     E  +F+    +  F      K   +  A  +  +   KG+  +P 
Sbjct: 303 VEAECYLHKMVNSGVEPNEFTYNTIINGF-----CKAGMMQNADKILRDAMFKGF--IPD 355

Query: 414 --IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
              Y+ L+  L   G++ +A+ +F +      + + + ++  ++   + G +L+A +   
Sbjct: 356 EFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMK 415

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVC 529
            ++E    P +  YN +  GLCK+G +  A  ++ D    +A G  P  F +   I   C
Sbjct: 416 DMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDA---IAKGCIPDIFTFNTLIDGYC 472

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           +    +K IE+L+ M   G  P+ +  + +++G+CK   L+     F  + E+      N
Sbjct: 473 KQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKG--CTPN 530

Query: 590 TIVYDEILIEHMKK 603
            I Y+ ILIE   K
Sbjct: 531 IITYN-ILIESFCK 543



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 188/413 (45%), Gaps = 6/413 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR    L +L  M    C+ +  +Y A+I     E        +++EM K  +  D++ +
Sbjct: 160 GRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTF 219

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI  LCK G V    +LF ++ + G+  +   + + I+GL  +G + +A  LL+ +V 
Sbjct: 220 NKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVS 279

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  YN++I G C+  +  +A       V   + P+  T N ++    + G M N
Sbjct: 280 EGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQN 339

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
             K+L   + +      D   +   + G   +  +  A+ VF E   KG+  S+ +YN L
Sbjct: 340 ADKILR--DAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTL 397

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L + G V +AL L   M       +  ++++ +    + G + +A    N  I    
Sbjct: 398 VKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGC 457

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           +P +  +N L  G CK   +D A+ ++ D + +    P    Y   +  +C++ + + ++
Sbjct: 458 IPDIFTFNTLIDGYCKQRNMDKAIEIL-DTMLSHGITPDVITYNTLLNGLCKARKLDNVV 516

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           +    M ++GC PN +  + +I   CK   + EA ++F  ++ R L  +  T+
Sbjct: 517 DTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTL 569



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 171/365 (46%), Gaps = 21/365 (5%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD F Y+++I  L  + +++  + V+ E  +   +  ++ Y TL+ GL K G V++  +L
Sbjct: 354 PDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQL 413

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
            ++M E+G   D   Y +++ GL   G +  A  +L D +  G   D+  +N++I G C+
Sbjct: 414 MKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCK 473

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL-AQMEK------LK 373
            +  DKA ++ +  +   + PD  T N LL    +  ++DN      A +EK      + 
Sbjct: 474 QRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIIT 533

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
           +++   +E F      K+ ++  A+++F+E+K +G +  +     L+  L   GE+ KA 
Sbjct: 534 YNIL--IESF-----CKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAY 586

Query: 433 YLFGKM-RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
            LF  + +      ++  F+I I       ++  A +  +K+      P    Y  +   
Sbjct: 587 ELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDS 646

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPT-EFKYALTILH-VCRSGEAEKIIEVLNEMTQEGC 549
            CK G ID A   +   L N++ G    F     +L+ +C +    + + ++N M Q G 
Sbjct: 647 YCKTGNIDLAHTFL---LENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGI 703

Query: 550 PPNEV 554
            P EV
Sbjct: 704 VPEEV 708



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/427 (20%), Positives = 183/427 (42%), Gaps = 49/427 (11%)

Query: 172 DQVPELMDSQGRIAEMLEILEK-MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK 230
           +++  ++  +G + E  ++  K M+R +C P++F +   I+ L  +  +D   R+ E + 
Sbjct: 220 NKLIHVLCKKGNVQESEKLFSKVMKRGVC-PNLFTFNIFIQGLCRKGAIDEAARLLESIV 278

Query: 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
            + +  DV++Y TLI G CK  ++V       +M  +G+  +   Y  +I G    G + 
Sbjct: 279 SEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQ 338

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            A  +L+D +  G+  D   Y+S+I GLC     ++A  +F   ++          N L+
Sbjct: 339 NADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLV 398

Query: 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS 410
              ++ G                                    ++ AL + +++   G S
Sbjct: 399 KGLSKQG-----------------------------------LVLQALQLMKDMMEHGCS 423

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
             +  YN+++  L ++G +  A  +           +  +F+  I  + +  ++ +A E 
Sbjct: 424 PDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEI 483

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALT 524
            + ++     P V  YN L  GLCK  ++D  +     ML + C  N+ +      Y + 
Sbjct: 484 LDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIIT------YNIL 537

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           I   C+  +  + +E+  EM   G  P+ V    +I G+C +G L++A ++F  + +   
Sbjct: 538 IESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYK 597

Query: 585 LTEANTI 591
            + +  I
Sbjct: 598 FSYSTAI 604



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/401 (21%), Positives = 166/401 (41%), Gaps = 15/401 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I E   +LE +      PDV +Y  +I        L        +M    VE +   
Sbjct: 264 KGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFT 323

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I G CK G +    ++ R+    G + D   Y  LI GL  +G + +A  +  + +
Sbjct: 324 YNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAM 383

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G++  + +YN+++ GL +     +A +L +  ++   +PD  T N ++    +MG + 
Sbjct: 384 EKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLS 443

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
           +   +L   + +      D+  F   + G  K+  +  A+++ + +   G +  V  YN 
Sbjct: 444 DANGILN--DAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNT 501

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L +  ++   +  F  M       N ++++I I+   +   + EA E   ++    
Sbjct: 502 LLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRG 561

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV-----CRSG 532
             P +     L  GLC  GE+D A  L             +F Y+  I ++     C   
Sbjct: 562 LTPDIVTLCTLICGLCSNGELDKAYELFV-----TIEKEYKFSYSTAIFNIMINAFCXKL 616

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
                 ++ ++M    C P+      +I   CK G ++ A 
Sbjct: 617 NVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAH 657



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 20/224 (8%)

Query: 141 WAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV-PELMD------------------SQ 181
           +   +KG+KH+   YN L   LS+  L   A Q+  ++M+                    
Sbjct: 380 YEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKM 439

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +++   IL       C PD+F +  +I     +RN+D  + + + M    +  DV+ Y
Sbjct: 440 GCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITY 499

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+ GLCK  ++    + F+ M E G   +   Y +LIE    + KV +A +L K++  
Sbjct: 500 NTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKT 559

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
            G   D+    ++I GLC   + DKAY+LF VT++ +    +ST
Sbjct: 560 RGLTPDIVTLCTLICGLCSNGELDKAYELF-VTIEKEYKFSYST 602


>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g19290-like [Cucumis
           sativus]
          Length = 885

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 175/386 (45%), Gaps = 2/386 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+ +  L +L  M  N CKP +  +  +I     E N++   + ++E++   +  + + 
Sbjct: 305 KGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIV 364

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G  K   + + + LF EM+   I+ D   +  L+ G    GK      LL+DL 
Sbjct: 365 YNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLS 424

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            SG   D  + +  + GLC   ++D+A KL E  ++  + P     N ++      G  +
Sbjct: 425 VSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLEE 484

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILM 419
             F     M K   + ++         + ++  +  A     ++  KG+    + + +L+
Sbjct: 485 RAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLL 544

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
                IG V  A  L+ +M+G  +  ++++F+  I     SG + +A +  + ++    V
Sbjct: 545 DGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFV 604

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+   YN L  G CK+G+++ A+ LVR+ +      P  F   + I  +C+ G  +  IE
Sbjct: 605 PNNFVYNSLIGGFCKVGKLNEALKLVRE-MNKRGLLPDIFTVNMIICGLCKQGRMKLAIE 663

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCK 565
              +M + G  P+ V  + +I G CK
Sbjct: 664 TFMDMCRMGLSPDIVTYNTLIDGYCK 689



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 174/409 (42%), Gaps = 55/409 (13%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +   Y  MI      R++     ++EEM+   +  D + + TL+ G  + G+   G+ L 
Sbjct: 361 NTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLL 420

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           R++  +G+L D ++  V + GL   G+  +A  LL++L++ G    +  +NSII      
Sbjct: 421 RDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLEKGIPPSVVAFNSIIAAYGNA 480

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA---- 377
              ++A+  + + V+  L P  ST + LL+     G +D  +  L  M    F V     
Sbjct: 481 GLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAF 540

Query: 378 -----------------------------ADLEKFFEFLVGKEERIMM--ALDVFEELKG 406
                                         D   F  F+ G     +M  A DVF ++  
Sbjct: 541 TVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLR 600

Query: 407 KGYSSVP---IYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESG 461
           KG+  VP   +YN L+G   ++G++ +AL L  +M  RGL  ++ +++  I   C  + G
Sbjct: 601 KGF--VPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLC--KQG 656

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCK---IGEIDAAMMLVRDCLGNVASG--P 516
            +  A E    +  M   P +  YN L  G CK   +G  D  MM + D      SG  P
Sbjct: 657 RMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSD------SGWEP 710

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
               Y + I   C   +  + + +L E+   G  PN V  + +I+ +C 
Sbjct: 711 DLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINAVCN 759



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 123/512 (24%), Positives = 204/512 (39%), Gaps = 46/512 (8%)

Query: 121 LVAEVLKVENNPTLASKFFHW--AGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM 178
           ++A +L  E    LA     W  A    G   N A++    + +  ++ F   D + +  
Sbjct: 139 VLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRVYESD-FSVLDTLMQAF 197

Query: 179 DSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN-------------------- 218
                  E LEIL KMR     P+  A + + R+L    +                    
Sbjct: 198 VKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNN 257

Query: 219 -------LDACLRVWEEMKKDLV--------EADVMAYVTLIMGLCKGGRVVRGHELFRE 263
                  L+ C + W  + + L+        E DV +Y  +I   C  G+      L   
Sbjct: 258 FTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNL 317

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M ENG     A +  +I+    EG V  A     ++ D G   +  +YN +I G  + + 
Sbjct: 318 MIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARD 377

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK---LKFSVAADL 380
             +A  LFE     D+ PD  T N L+      G+ ++  +LL  +     L  S   D+
Sbjct: 378 ISQANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDV 437

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
                   G+ +    A+ + E L  KG   SV  +N ++ A    G  ++A Y +G M 
Sbjct: 438 TVAGLCWAGRYDE---AMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMV 494

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              L  +S + S  +   V  G + EA      +I+     +  A+  L  G  +IG ++
Sbjct: 495 KFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVN 554

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A  L  +  G     P    +A  I  +C SG      +V ++M ++G  PN  + +++
Sbjct: 555 MAESLWNEMKGR-GVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSL 613

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           I G CK G L EA K+   + +R LL +  T+
Sbjct: 614 IGGFCKVGKLNEALKLVREMNKRGLLPDIFTV 645



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 126/265 (47%), Gaps = 14/265 (5%)

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           MA+  L+ G  + G V     L+ EMK  G+  D   +   I GL   G +  A D+  D
Sbjct: 538 MAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSD 597

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           ++  G+  +  +YNS+IGG C+V + ++A KL     +  L PD  TVN ++    + GR
Sbjct: 598 MLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGR 657

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIY 415
           M     +   M+  +  ++ D+  +   + G  K   +  A D+  ++   G+   +  Y
Sbjct: 658 MK--LAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTY 715

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHV--ESGDILEACECHN 471
           NI +     + ++ +A+ +  ++  + +  N+++++  I   C+V  +   IL A     
Sbjct: 716 NIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINAVCNVILDHAMILTA----- 770

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIG 496
           K+++M+ VP+    N L    CK G
Sbjct: 771 KLLKMAFVPNTVTVNVLLSQFCKQG 795



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 1/194 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G + +  ++   M R    P+ F Y ++I        L+  L++  EM K  +  D+  
Sbjct: 585 SGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFT 644

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
              +I GLCK GR+    E F +M   G+  D   Y  LI+G      VG A DL+  + 
Sbjct: 645 VNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMS 704

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           DSG+  DL  YN  I G C V++ ++A  + E  +   + P+  T N ++     +  +D
Sbjct: 705 DSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINAVCNV-ILD 763

Query: 361 NFFKLLAQMEKLKF 374
           +   L A++ K+ F
Sbjct: 764 HAMILTAKLLKMAF 777



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 129/306 (42%), Gaps = 36/306 (11%)

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           + AY  F++  +DD      +      CC           LLA  E+L+F +A D+  + 
Sbjct: 116 ETAYAFFKLAFKDDSEETVRS------CCV-------LAHLLAA-EQLRF-LAQDIVSWV 160

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
              +G      +A  ++E  +    S   + + LM A ++     +AL +  KMR + + 
Sbjct: 161 VARIGPGRSKNLAAFMWEGHRVYE-SDFSVLDTLMQAFVKSEMHFEALEILSKMREVGVT 219

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG--EIDAAM 502
            N  + SI  +  + +GD     +    ++     P+   +N L    C+ G   I  A+
Sbjct: 220 PNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEAL 279

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
           + V   +G     P  + Y + I   C  G++   + +LN M + GC P+      II  
Sbjct: 280 LHV---MGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDA 336

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK-------------KTADLV 609
            CK G +E ARK F  + +  L    NTIVY+ ++  ++K              +T D+V
Sbjct: 337 FCKEGNVELARKYFDEIEDMGL--SQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIV 394

Query: 610 LSGLKF 615
             G+ F
Sbjct: 395 PDGITF 400



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 3/174 (1%)

Query: 177 LMDSQGRIA--EMLEIL-EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L+D   RI    M E L  +M+     PD  A+ A I  L     +     V+ +M +  
Sbjct: 543 LLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKG 602

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
              +   Y +LI G CK G++    +L REM + G+L D     ++I GL  +G++  A 
Sbjct: 603 FVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAI 662

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
           +   D+   G   D+  YN++I G C+      A  L          PD +T N
Sbjct: 663 ETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYN 716


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 172/386 (44%), Gaps = 2/386 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ +  + +  M  +  KP++  Y  ++    +   ++A   +   MK+  +E D   
Sbjct: 234 EGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFT 293

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI G+CK GR+    ++F EM + G+     IY  LI+G   +G +  A     +++
Sbjct: 294 YGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEML 353

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G    +  YNS+I  L   ++ D+A  + +   +  ++PD  T N L+          
Sbjct: 354 KKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAK 413

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILM 419
             F L  +M                 ++ K+ R+  A D+F+++  +G    V ++N L+
Sbjct: 414 KAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALI 473

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
                   VK A  L   M  + +  + ++F+  +Q H   G + EA E  +++      
Sbjct: 474 DGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIK 533

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P   ++N L  G  + G+I  A   VR+ + +    PT   Y   +  +C++ E +   E
Sbjct: 534 PDHISFNTLISGYSRRGDIKDAFR-VRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEE 592

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCK 565
           +L EM  +G  P++     +I G+ K
Sbjct: 593 LLKEMVSKGMTPDDTTYFTLIEGIAK 618



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 161/384 (41%), Gaps = 37/384 (9%)

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
           +M R   K  V+ +  MI VL  E  L         M+   V+ +++ Y T++ G C  G
Sbjct: 211 EMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSG 270

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
           RV     +   MK   I  D   YG LI G+  +G++ +A  + +++V  G R    IYN
Sbjct: 271 RVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYN 330

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
           ++I G C     D A    +  ++  ++P  ST N L+                      
Sbjct: 331 TLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLI---------------------- 368

Query: 373 KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKA 431
                          +  E+R   A  + +E++ KG S   I YNIL+         KKA
Sbjct: 369 -------------HALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKA 415

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
             L  +M    ++    +++  +    +   + EA +   KI     +P V  +N L  G
Sbjct: 416 FLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDG 475

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
            C    +  A  L++D +  +   P E  +   +   CR G+ E+  E+ +EM + G  P
Sbjct: 476 HCSNSNVKGAFELLKD-MDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKP 534

Query: 552 NEVICSAIISGMCKHGTLEEARKV 575
           + +  + +ISG  + G +++A +V
Sbjct: 535 DHISFNTLISGYSRRGDIKDAFRV 558



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 161/370 (43%), Gaps = 33/370 (8%)

Query: 147 GYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           G K N  +YN +   YC                  S GR+     IL  M+R   +PD F
Sbjct: 251 GVKPNIVTYNTIVHGYC------------------SSGRVEAADAILTTMKRQKIEPDSF 292

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y ++I  +  +  L+   +++EEM +  +    + Y TLI G C  G +        EM
Sbjct: 293 TYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEM 352

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            + GI    + Y  LI  L  E +  +A  ++K++ + G   D   YN +I G CR    
Sbjct: 353 LKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANA 412

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM---DNFFKLLAQMEKLKFSVAADLE 381
            KA+ L +  +   + P   T   LL   ++  RM   D+ FK +         V  D+ 
Sbjct: 413 KKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSE-----GVLPDVI 467

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVP----IYNILMGALLEIGEVKKALYLFGK 437
            F   + G      +    FE LK      VP     +N +M      G+V++A  LF +
Sbjct: 468 MFNALIDGHCSNSNVK-GAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDE 526

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M+   ++ + +SF+  I  +   GDI +A    N++++    P+V  YN L +GLCK  E
Sbjct: 527 MKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQE 586

Query: 498 IDAAMMLVRD 507
            D A  L+++
Sbjct: 587 GDLAEELLKE 596



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 98/204 (48%), Gaps = 16/204 (7%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G K    +Y +L + LS+ N  + AD + + + S+G +                PDV  +
Sbjct: 426 GIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVL----------------PDVIMF 469

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
            A+I    +  N+     + ++M +  V  D + + T++ G C+ G+V    ELF EMK 
Sbjct: 470 NALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKR 529

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            GI  D   +  LI G    G +  A  +  +++D+G+   +  YN+++ GLC+ ++ D 
Sbjct: 530 RGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDL 589

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLL 350
           A +L +  V   + PD +T   L+
Sbjct: 590 AEELLKEMVSKGMTPDDTTYFTLI 613


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 105/443 (23%), Positives = 193/443 (43%), Gaps = 34/443 (7%)

Query: 145  QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            + G+  +  +Y  L + L R+                GR  E +EIL+ M    C P+  
Sbjct: 641  EAGFHPSVVTYTTLCHGLCRS----------------GRFDEAVEILDYMAARGCAPNAI 684

Query: 205  AYTAMIRVLAAERNLDACLRVWEEMKKD-LVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y++++  L     +   L  +E+M +D +V   V+AY  LI GLCK GR+   +E    
Sbjct: 685  TYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLER 744

Query: 264  MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
            M   G + D   + +LI GL   G++    +L   + + G +AD+  YN++I   C   +
Sbjct: 745  MIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGE 804

Query: 324  FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD---NFFKLLAQMEKLKFSVAADL 380
            F  AY L E      +A +  T   ++       R+D   ++F  + +  + + S    +
Sbjct: 805  FSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEISYNTLI 864

Query: 381  EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
                        R   AL++   +   G S     Y  +M  L + G  + A  L  +MR
Sbjct: 865  TSLV-----ASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMR 919

Query: 440  GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
                  +  +++I I    ++  +  AC+   +++  +  P    Y+ L    CK  ++D
Sbjct: 920  SRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVD 979

Query: 500  AAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
             A  L+R      +SG  PT   Y+  +  +C++   +K +EV+ EM  + C P   I +
Sbjct: 980  DAWKLLR------SSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWT 1033

Query: 558  AIISGMCKHGTLEEARKVFTNLR 580
            ++ +     G ++EA K+  +L+
Sbjct: 1034 SLATAYVAEGRVDEAVKLVNDLQ 1056



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 176/392 (44%), Gaps = 13/392 (3%)

Query: 197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
            +C+P +  Y  ++  L+    +   L + E M +  +  DV+ + +++ GLCK  R++ 
Sbjct: 467 QVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILD 526

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
            H +F+   E G   +   Y  LI+GL    K+ +A  LL  +V+ G RA+   Y++++ 
Sbjct: 527 AHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVD 586

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           GL +V + + A  +          PD  T N L+    +  R+     LL +M +  F  
Sbjct: 587 GLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHP 646

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLF 435
           +          + +  R   A+++ + +  +G +   I Y+ ++  L + G V +AL  F
Sbjct: 647 SVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYF 706

Query: 436 GKM-RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
            KM R   +  + +++S  I    ++G I EA E   ++I   ++P V  ++ L  GLC 
Sbjct: 707 EKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCD 766

Query: 495 IGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
            G ID  +     M  R C  ++      + Y   I   C  GE      +L EM   G 
Sbjct: 767 AGRIDTGLELFCGMAERGCKADI------YAYNAMINAYCLKGEFSAAYALLEEMKTHGI 820

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
             N V    +I  +C +  ++EA   F ++ E
Sbjct: 821 AKNTVTHGIVIKALCGNDRIDEAVSYFHSIPE 852



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/460 (22%), Positives = 197/460 (42%), Gaps = 34/460 (7%)

Query: 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEMLE 189
           +    +YN L   LS++ + R A  + E M   G                   RI +   
Sbjct: 470 RPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHN 529

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           + ++     C+P+V  Y+ +I  L+    +D  L++  +M +    A+ + Y T++ GL 
Sbjct: 530 VFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLL 589

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K GR+     + R+M++ G L D   Y  LI+G     ++ +A  LL++++++G+   + 
Sbjct: 590 KVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVV 649

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            Y ++  GLCR  +FD+A ++ +       AP+  T + ++    + GR+        +M
Sbjct: 650 TYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKM 709

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIG 426
            + +  VA  +  +   + G  K  RI  A +  E +   G    V  ++IL+  L + G
Sbjct: 710 ARDEV-VAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAG 768

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            +   L LF  M     + +  +++  I  +   G+   A     ++       +   + 
Sbjct: 769 RIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHG 828

Query: 487 CLTKGLCKIGEIDAAM----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
            + K LC    ID A+     +  DC         E  Y   I  +  S  +E+ +E+L 
Sbjct: 829 IVIKALCGNDRIDEAVSYFHSIPEDC-------RDEISYNTLITSLVASRRSEQALELLR 881

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
            M  +G  P+      ++ G+ K G+ E A K+   +R R
Sbjct: 882 AMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSR 921



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 184/409 (44%), Gaps = 27/409 (6%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ +      K  +   +P V  Y+ +I  L  +  +D   ++ EEM       + + Y
Sbjct: 15  GRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTY 74

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+  L   GR      L   M  NG   +   +G++I+GL  EG++  A  ++ ++VD
Sbjct: 75  NTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVD 134

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G+  D+ I+  ++  LC + + D+A+  F+  +     PD  T N ++    + GR++ 
Sbjct: 135 RGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEA 194

Query: 362 ---FFKLLAQM----EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVP 413
                +LLA+         F++A D        + K   +  A + F+ +   G S +  
Sbjct: 195 AGMVLQLLAESFSSPTVFTFTIAVD-------GLSKAGNLTGAYEFFDSMPQTGVSPNTV 247

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            Y+ L+  L + G++  AL   G +R  N +    +FS  +    ++  + EA +    +
Sbjct: 248 TYDALIDGLCKAGKLDIAL---GLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQL---L 301

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC---R 530
             M  VP+V  +N L  GLC+   +D A  L  D +           Y + +  +C   R
Sbjct: 302 KAMPCVPNVVCFNSLMNGLCQARRVDEAFELF-DVMKESGCSADVITYNILLKGLCKLRR 360

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             EA + +E++     EGC PN V  S +I G+C  G + +A +V+  +
Sbjct: 361 IPEAYRHVELMRR--TEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERM 407



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 139/563 (24%), Positives = 230/563 (40%), Gaps = 84/563 (14%)

Query: 95  AFRKN-QFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFH-WAGKQKGYKHNF 152
           AFRK  QF + P VVT  +         V + L  +N      K     AG+  G   N 
Sbjct: 23  AFRKAIQFGFRPTVVTYST---------VIDGLCRDNEVDKGCKLLEEMAGR--GCAPNA 71

Query: 153 ASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRV 212
            +YN L      N L             QGR  E   +LE+M  N C P++  +  +I+ 
Sbjct: 72  VTYNTLV-----NALL-----------GQGRAKEAFSLLERMAANGCPPELITFGLIIKG 115

Query: 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           L  E  ++A  RV +EM       DV  +  L+  LC+ GRV      F+++   G   D
Sbjct: 116 LCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPD 175

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              Y  +++GL   G++  A  +L+ L +S     +  +   + GL +      AY+ F+
Sbjct: 176 AVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFD 235

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL----AQMEKLKFSV-------AADLE 381
              Q  ++P+  T + L+    + G++D    LL    +Q     FS        A  LE
Sbjct: 236 SMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLE 295

Query: 382 KFFEFL------------------VGKEERIMMALDVFEELKGKGYSS-VPIYNILMGAL 422
           +  + L                  + +  R+  A ++F+ +K  G S+ V  YNIL+  L
Sbjct: 296 EAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGL 355

Query: 423 LEIGEVKKALYLFGKMRGL-NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-P 480
            ++  + +A      MR       N ++FS  IQ    +G + +A E + +++ +  + P
Sbjct: 356 CKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISP 415

Query: 481 SVAAYNCLTKGLCKIG-----EIDAAMMLVR---------------DCLGNVASGPTEFK 520
           +   Y  L +GLCK G     E     ML R               D L      PT   
Sbjct: 416 NRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVT 475

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           Y   +  + +SG     + +L  M + G  P+ +  ++++ G+CK   + +A  VF    
Sbjct: 476 YNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRAL 535

Query: 581 ERKLLTEANTIVYDEILIEHMKK 603
           ER      N + Y   LI+ + K
Sbjct: 536 ERG--CRPNVVTY-STLIDGLSK 555



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 175/362 (48%), Gaps = 12/362 (3%)

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           ++ Y  LI GLCK GRV      FR+  + G       Y  +I+GL  + +V K C LL+
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           ++   G   +   YN+++  L    +  +A+ L E    +   P+  T   ++    + G
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEG 120

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YN 416
            ++  F+++ +M    F    ++       + +  R+  A   F+++   G++   + YN
Sbjct: 121 EIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYN 180

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++  L + G ++ A  +   +          +F+IA+    ++G++  A E  + + + 
Sbjct: 181 TMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQT 240

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH-VCRSGEAE 535
              P+   Y+ L  GLCK G++D A+ L+RD   N  +G   F    ++LH +C++   E
Sbjct: 241 GVSPNTVTYDALIDGLCKAGKLDIALGLLRD--KNSQAGMFAFS---SLLHGLCQAHRLE 295

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           + I++L  M    C PN V  +++++G+C+   ++EA ++F  ++E      A+ I Y+ 
Sbjct: 296 EAIQLLKAMP---CVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESG--CSADVITYNI 350

Query: 596 IL 597
           +L
Sbjct: 351 LL 352



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 110/531 (20%), Positives = 209/531 (39%), Gaps = 91/531 (17%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELM-------------------DSQGRIAEM 187
           G+  +  +YN +   L +     AA  V +L+                      G +   
Sbjct: 171 GFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGA 230

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            E  + M +    P+   Y A+I  L     LD  L +  +      +A + A+ +L+ G
Sbjct: 231 YEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNS---QAGMFAFSSLLHG 287

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC+  R+    +L + M     + +   +  L+ GL    +V +A +L   + +SG  AD
Sbjct: 288 LCQAHRLEEAIQLLKAMP---CVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSAD 344

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD-LAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           +  YN ++ GLC++++  +AY+  E+  + +  +P+  T + L+      GR++  +++ 
Sbjct: 345 VITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVY 404

Query: 367 AQMEKL------KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI------ 414
            +M  +      +F+ A  LE   +   G   R+    +   E + +  SS PI      
Sbjct: 405 ERMVAVEGISPNRFTYAFLLEGLCK--AGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVD 462

Query: 415 -------------YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
                        YN L+  L + G V+ AL L   M    L  + ++F+  +    +  
Sbjct: 463 FLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQ 522

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
            IL+A     + +E    P+V  Y+ L  GL K+ ++D A+ L+   +  +        Y
Sbjct: 523 RILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAK-MVELGCRANTVTY 581

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG------------------- 562
           +  +  + + G  E  + VL +M   GC P+ V  + +I G                   
Sbjct: 582 STVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLE 641

Query: 563 ----------------MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
                           +C+ G  +EA ++   +  R      N I Y  I+
Sbjct: 642 AGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG--CAPNAITYSSIV 690


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 184/389 (47%), Gaps = 7/389 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD  ++ A+I     +  ++    +   M+      D      ++   C+ GR     EL
Sbjct: 183 PDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVFCQKGRFRDVSEL 242

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           FR M E G   +   Y   I+GL     V +A  +L+++V  G + ++  + S+I GLC+
Sbjct: 243 FRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGLCK 302

Query: 321 VKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +   ++A++LF ++       P+  T   ++    + G++     LL +M  ++  +A +
Sbjct: 303 IGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRM--VEQGLAPN 360

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
              +   + G  KE     A ++  +++ +G+  ++  YN L+  L + G++++A  +  
Sbjct: 361 TNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLR 420

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
                 L+++ +++++ I  H + G I  A +  N++ E    P +  Y  L    C+  
Sbjct: 421 MANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQR 480

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           +++ +  L   CL  +   PT+  Y   I   C+ G++   + V   M Q GC  + +  
Sbjct: 481 QMEESQKLFDKCLA-IELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITY 539

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLL 585
            A+ISG+CK   LEEAR ++  + +++L+
Sbjct: 540 GALISGLCKESRLEEARALYEGMLDKRLV 568



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 158/373 (42%), Gaps = 17/373 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR  ++ E+  +M      P+V  YTA I  L     +     V EEM    ++ +V  
Sbjct: 233 KGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYT 292

Query: 241 YVTLIMGLCKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           + +LI GLCK G   R   LF ++ K +    +   Y V+I G   EGK+ +A  LL  +
Sbjct: 293 HTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRM 352

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V+ G   +   Y ++I G C+   F+ A++L     ++   P+  T N L+    + G++
Sbjct: 353 VEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKI 412

Query: 360 DNFFKLLA-------QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSS 411
              +K+L        Q++K+ ++V             K+  I  ALD+F  +   G +  
Sbjct: 413 QEAYKVLRMANNQGLQLDKVTYTVMITEH-------CKQGHITYALDLFNRMAENGCHPD 465

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           +  Y  L+    +  +++++  LF K   + L     +++  I  + + G    A     
Sbjct: 466 IHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFE 525

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           ++++         Y  L  GLCK   ++ A  L    L      P E          CR 
Sbjct: 526 RMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDKRLV-PCEVTPVTLAFEYCRR 584

Query: 532 GEAEKIIEVLNEM 544
            +A   + +L+ +
Sbjct: 585 EKAVVAVSILDRL 597



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 149/369 (40%), Gaps = 27/369 (7%)

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           YVT        G +   HE  R M               +      G++ +A D++ ++ 
Sbjct: 97  YVTAATTFVDRGSLPMAHEAMRRM---------------VAAFAEAGRLPEAADMVFEMR 141

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE-VTVQDDLAPDFSTVNPLLVCCAEMGRM 359
             G    +   N ++        F  A K+F+ +  +  L PD  +   L+V C   GRM
Sbjct: 142 SHGLPFCVETANWVLRAGLDTGSFAYARKVFDGMVTRGGLLPDARSFRALIVGCCRDGRM 201

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNIL 418
           +    LL  M+   F +          +  ++ R     ++F  +   G   +V  Y   
Sbjct: 202 EEVDALLTVMQGQGFCLDNATCTVIVRVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAW 261

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L +   VK+A Y+  +M    L+ N  + +  I    + G    A     K+I+ S 
Sbjct: 262 IDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSS 321

Query: 479 V-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS---GPTEFKYALTILHVCRSGEA 534
             P+V  Y  +  G CK G++  A ML    LG +      P    Y   I   C+ G  
Sbjct: 322 YKPNVHTYTVMIGGYCKEGKLARAEML----LGRMVEQGLAPNTNTYTTLISGHCKEGSF 377

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
               E++N+M +EG  PN    +A+I G+CK G ++EA KV      + L  + + + Y 
Sbjct: 378 NCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGL--QLDKVTYT 435

Query: 595 EILIEHMKK 603
            ++ EH K+
Sbjct: 436 VMITEHCKQ 444



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/367 (20%), Positives = 149/367 (40%), Gaps = 57/367 (15%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           K   YK N  +Y  +   YC                   +G++A    +L +M      P
Sbjct: 318 KSSSYKPNVHTYTVMIGGYC------------------KEGKLARAEMLLGRMVEQGLAP 359

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +   YT +I     E + +    +  +M+++  + ++  Y  LI GLCK G++   +++ 
Sbjct: 360 NTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVL 419

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           R     G+ +D+  Y V+I     +G +  A DL   + ++G   D+  Y ++I   C+ 
Sbjct: 420 RMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQ 479

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
           +Q +++ KLF+  +  +L P   T   ++    ++G+  +  ++  +M  ++    AD  
Sbjct: 480 RQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERM--VQNGCQADSI 537

Query: 382 KFFEFLVG--KEERIMMALDVFEEL---------------------KGKGYSSVPI---- 414
            +   + G  KE R+  A  ++E +                     + K   +V I    
Sbjct: 538 TYGALISGLCKESRLEEARALYEGMLDKRLVPCEVTPVTLAFEYCRREKAVVAVSILDRL 597

Query: 415 --------YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
                    N+L+  L  IG V+ A     K   ++L V+ L+++  I     +     A
Sbjct: 598 DKRRKNHTVNVLVRKLSAIGHVEDASLFLKKALDVDLAVDRLAYTSFINSCYANKKYALA 657

Query: 467 CECHNKI 473
            E   KI
Sbjct: 658 TEISEKI 664


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 192/408 (47%), Gaps = 34/408 (8%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  +   ++ +M      PD   Y+ +I  L     ++   ++++EMK++ +  DV  Y
Sbjct: 201 GKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVY 260

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI   CK G + +    F EM+ +G   +   Y  LI   +   KV KA ++ + ++ 
Sbjct: 261 TTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLS 320

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++  Y ++I GLC+  + +KA +++++  ++++               E+  +D 
Sbjct: 321 KGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENV---------------EIPDVDM 365

Query: 362 FFKLL--AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
            F+++  A  E   F+  A ++   +    KE R     D+ + +  +G   +  +Y+ L
Sbjct: 366 HFRVVDGASNEPNVFTYGALVDGLCKAYQVKEAR-----DLLKSMSVEGCEPNHVVYDAL 420

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G++ +A  +F  M     + N  ++S  I    +   +  A +  +K++E S 
Sbjct: 421 IDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSC 480

Query: 479 VPSVAAYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            P+V  Y  +  GLCK+G+ D A     MM  + C  NV +      Y   I    +SG 
Sbjct: 481 APNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVT------YTAMIDGFGKSGR 534

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            EK +E+L +M+ +GC PN V    +I+  C  G L+EA K+   +++
Sbjct: 535 VEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQ 582



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 108/456 (23%), Positives = 195/456 (42%), Gaps = 29/456 (6%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G+  E L +LEK       PD   YT MI  L      +  +     M+      +V+ 
Sbjct: 23  SGKWREALSLLEKEEF---VPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLT 79

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ G     ++ R   +   M   G      I+  L+      G    A  LLK +V
Sbjct: 80  YRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMV 139

Query: 301 DSGYRADLGIYNSIIGGLCRVKQ-----FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
             G +    +YN +IGG+C  ++      D A K +   ++  +  +   ++    C   
Sbjct: 140 QCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCG 199

Query: 356 MGRMDNFFKLLAQMEKLKF-SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVP 413
           +G+ +  + ++ +M    F    +   K   +L     ++  A  +F+E+K  G +  V 
Sbjct: 200 IGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNA-SKVEKAFQLFQEMKRNGIAPDVY 258

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           +Y  L+ +  + G +++A   F +M       N ++++  I  +++S  + +A E +  +
Sbjct: 259 VYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMM 318

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR------------DCLGNVASG----PT 517
           +     P++  Y  L  GLCK G+I+ A  + +            D    V  G    P 
Sbjct: 319 LSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPN 378

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
            F Y   +  +C++ + ++  ++L  M+ EGC PN V+  A+I G CK G L+EA++VFT
Sbjct: 379 VFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFT 438

Query: 578 NLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
            + E     + N   Y  ++    K K  DL L  L
Sbjct: 439 TMLECGY--DPNVYTYSSLIDRLFKDKRLDLALKVL 472



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 103/502 (20%), Positives = 208/502 (41%), Gaps = 71/502 (14%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E ++ L +MR + C P+V  Y  ++     +  L  C R+   M  +        + +L+
Sbjct: 60  EAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLV 119

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG----------------------- 282
              C+ G     ++L ++M + G      +Y +LI G                       
Sbjct: 120 HAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEML 179

Query: 283 -----------------LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
                            L G GK  KA +++++++  G+  D   Y+ +IG LC   + +
Sbjct: 180 EAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVE 239

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           KA++LF+   ++ +APD      L+    + G ++       +ME+     A ++  +  
Sbjct: 240 KAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMER--DGCAPNVVTYTA 297

Query: 386 FLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            +    K  ++  A +V+E +  KG + ++  Y  L+  L + G+++KA  ++  M+  N
Sbjct: 298 LIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKEN 357

Query: 443 LEV-----------------NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           +E+                 N  ++   +    ++  + EA +    +      P+   Y
Sbjct: 358 VEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVY 417

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           + L  G CK G++D A  +    L      P  + Y+  I  + +    +  ++VL++M 
Sbjct: 418 DALIDGCCKAGKLDEAQEVFTTML-ECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKML 476

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKT 605
           +  C PN VI + +I G+CK G  +EA K+   + E+      N + Y  ++    K   
Sbjct: 477 ENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKG--CNPNVVTYTAMIDGFGKSGR 534

Query: 606 ADLVLSGLKFFGLESKLKAKGC 627
            +  L  L+      ++ +KGC
Sbjct: 535 VEKCLELLQ------QMSSKGC 550



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 111/482 (23%), Positives = 205/482 (42%), Gaps = 73/482 (15%)

Query: 162 LSRNNLFRAADQVPELMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
           + RN +         L+DS    G I +     ++M R+ C P+V  YTA+I      R 
Sbjct: 248 MKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRK 307

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI--------- 269
           +     V+E M       +++ Y  LI GLCK G++ +  ++++ MK+  +         
Sbjct: 308 VSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHF 367

Query: 270 -LIDRA-------IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            ++D A        YG L++GL    +V +A DLLK +   G   +  +Y+++I G C+ 
Sbjct: 368 RVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKA 427

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            + D+A ++F   ++    P+  T + L+    +  R+D   K+L++M  L+ S A ++ 
Sbjct: 428 GKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKM--LENSCAPNVV 485

Query: 382 KFFEFL-----VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
            + E +     VGK +     + + EE   KG + +V  Y  ++    + G V+K L L 
Sbjct: 486 IYTEMIDGLCKVGKTDEAYKLMVMMEE---KGCNPNVVTYTAMIDGFGKSGRVEKCLELL 542

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ----------------- 478
            +M       N +++ + I  H  S  +L+  E H  + EM Q                 
Sbjct: 543 QQMSSKGCAPNFVTYRVLIN-HCCSTGLLD--EAHKLLEEMKQTYWPRHVAGYRKVIEGF 599

Query: 479 -------------------VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA--SGPT 517
                              VP    Y  L     K G ++ A+ L  + L + +  S   
Sbjct: 600 NREFIASLYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIALELNEE-LSSFSPFSAAN 658

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
           +  +   I ++  + +A+K  E+  +M   G  P   I   +I G+ +    EEA ++  
Sbjct: 659 QNIHITLIENLSLAHKADKAFELYADMISRGSIPELSILVHLIKGLLRVNRWEEALQLLD 718

Query: 578 NL 579
           ++
Sbjct: 719 SI 720



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 31/220 (14%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           GY  N  +Y++L      + LF+             R+   L++L KM  N C P+V  Y
Sbjct: 444 GYDPNVYTYSSLI-----DRLFK-----------DKRLDLALKVLSKMLENSCAPNVVIY 487

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           T MI  L      D   ++   M++     +V+ Y  +I G  K GRV +  EL ++M  
Sbjct: 488 TEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSS 547

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G   +   Y VLI      G + +A  LL+++  + +   +  Y  +I G  R +    
Sbjct: 548 KGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNR-EFIAS 606

Query: 327 AYKLFEVTVQDD--LAPDFSTVNPLLVCCAEMGRMDNFFK 364
            Y  FE++  D   +AP +  +            +DNF K
Sbjct: 607 LYLSFEISENDSVPVAPVYRVL------------IDNFIK 634


>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 794

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 181/416 (43%), Gaps = 8/416 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ +  +++EK     C P++  Y  +I     + + +    +++E+K       V  
Sbjct: 185 EGKVEDGWKLIEKRWGRGCMPNIVFYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKT 244

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G CK G+     +L  EM E G+ +   IY  +I+     G   +A D +  ++
Sbjct: 245 YGAIINGFCKKGKFEVVDKLLVEMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMI 304

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            SG   D+  YN +I G C   +  KA +L E  ++  L P+  +  PL+    + G   
Sbjct: 305 KSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYL 364

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
               LL +M +       DL  +   + G      + +AL V  ++  KG      IYN+
Sbjct: 365 RALDLLIKMSERGHK--PDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNV 422

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           LM  L + G +  A  L  +M   N+  ++   +  +   +  GD  EA +     IE  
Sbjct: 423 LMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKG 482

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P V  YN + KG CK G +  A++  +  +  + S P EF Y+  I    +  +    
Sbjct: 483 IDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHS-PDEFTYSTIIDGYIKMNDLHGA 541

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
           + +   M +  C PN V  + +I+G C  G +  A K F  +   +L  + N + Y
Sbjct: 542 LRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRL--KPNVVTY 595



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 199/481 (41%), Gaps = 17/481 (3%)

Query: 98  KNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNA 157
           K   +W   + T          D+   +    ++P +  +FFHWA KQ            
Sbjct: 10  KTDPEWQESLETHFLDTEIPASDIACHMFDQIHDPEMGLEFFHWASKQSN---------- 59

Query: 158 LAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER 217
              C +  N F  +  +  L   +   +E+  +L+ M+     P   A++ +I V A   
Sbjct: 60  ---CGNYLNEFSCSSLLRLLARRR-LFSEVESLLKIMKSKDLMPTREAFSLVISVFADCG 115

Query: 218 NLDACLRVWEE-MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
            +D  L  +   +K      DV +  +L+  L K G+V    +++ EM +    +D    
Sbjct: 116 LVDRALEFYRTFIKIHHCVPDVFSCNSLLNVLVKHGKVEIACKVYDEMVDRNGEVDNYTV 175

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
            ++++GL  EGKV     L++     G   ++  YN++I G C+    ++A  LF+    
Sbjct: 176 CIMVKGLCKEGKVEDGWKLIEKRWGRGCMPNIVFYNTLIDGYCKKGDTERANVLFKELKM 235

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL-EKFFEFLVGKEERIM 395
               P   T   ++    + G+ +   KLL +M +    V+  +     +       RI 
Sbjct: 236 KGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEMSERGLDVSIHIYNNIIDAQFKHGCRIE 295

Query: 396 MALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
            A  V   +K      +  YNIL+      GEV KA  L  +     L  N +S++  I 
Sbjct: 296 AADTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIH 355

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
            + + G+ L A +   K+ E    P +  Y  L  GL   GE+D A+  VR+ +      
Sbjct: 356 NYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALT-VRNKMVEKGVL 414

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    Y + +  +C+ G       +L EM  +   P+  I + ++ G  +HG  EEA+K+
Sbjct: 415 PDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKL 474

Query: 576 F 576
           F
Sbjct: 475 F 475



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 101/429 (23%), Positives = 194/429 (45%), Gaps = 35/429 (8%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE----RNLDACLRVWEEMKKDLVE 235
           S G + +  ++LE+  +    P+  +YT +I     +    R LD  +++ E   K    
Sbjct: 324 SCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHK---- 379

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            D++ Y  LI GL   G V     +  +M E G+L D  IY VL+ GL  +G++  A  L
Sbjct: 380 PDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVL 439

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
           L +++D     D  I  +++ G  R   F++A KLFE+T++  + P     N ++    +
Sbjct: 440 LAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCK 499

Query: 356 MGRMDNFFKLLAQM-----EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL-KGKGY 409
            G M +      +M        +F+ +  ++ +      K   +  AL +F  + KG   
Sbjct: 500 FGMMKDALLCFKRMIQGLHSPDEFTYSTIIDGYI-----KMNDLHGALRMFGLMVKGACK 554

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
            +V  Y +L+      G++ +A   F +M  L L+ N ++++I I C  +  ++ +AC  
Sbjct: 555 PNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVTYTILIGCFCKGVNLTKACSF 614

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM----------MLVRDCLGNVASGPTEF 519
             +++    +P+   YN L  GL     +D  +           LV +  G + S   + 
Sbjct: 615 FEQMLMEKCLPNDVTYNYLMNGL--TNNVDFVISNQRSEQTENSLVLESFGMMISDGWDR 672

Query: 520 K---YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           +   Y   ++ +C+    +  + + ++M  +G  P+ V   A++ G+C  G  ++   V 
Sbjct: 673 RAASYNSILICLCQHKMVKHALHLRDKMMSKGFLPDPVSLVALLHGLCLEGRSQDWNNVI 732

Query: 577 T-NLRERKL 584
           +  L ER+L
Sbjct: 733 SCKLNEREL 741



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 4/173 (2%)

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ-VPSVAAYNCLTKGLCKIG 496
           M+  +L     +FS+ I    + G +  A E +   I++   VP V + N L   L K G
Sbjct: 92  MKSKDLMPTREAFSLVISVFADCGLVDRALEFYRTFIKIHHCVPDVFSCNSLLNVLVKHG 151

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           +++ A   V D + +       +   + +  +C+ G+ E   +++ +    GC PN V  
Sbjct: 152 KVEIACK-VYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGRGCMPNIVFY 210

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLV 609
           + +I G CK G  E A  +F  L+ +  L    T  Y  I+    KK   ++V
Sbjct: 211 NTLIDGYCKKGDTERANVLFKELKMKGFLPTVKT--YGAIINGFCKKGKFEVV 261


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 187/403 (46%), Gaps = 22/403 (5%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G++ N  SYN +   L +                 G  +  +++ +KM +N CKPDV 
Sbjct: 186 RRGHEPNVISYNTIINGLCKT----------------GNTSMAVDVFKKMEQNGCKPDVV 229

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  +I  L  +R ++  +    EM    +  +V  Y  ++ G C  G++     LF+EM
Sbjct: 230 TYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEM 289

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
               ++ D     +L++GL  EG V +A  + + + + G   ++  YN+++ G C  +  
Sbjct: 290 VGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLM 349

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           ++A K+FE+ ++   AP   + N L+    +  RMD    LLA+M     ++  D   + 
Sbjct: 350 NEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHK--ALNPDTVTYS 407

Query: 385 EFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
             + G  +  R   AL++F+E+   G   ++  Y+IL+    + G + +AL L   M+  
Sbjct: 408 TLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEK 467

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            LE N +  +I I+    +G +  A E  +K+      P++  Y  + KGL K G  D A
Sbjct: 468 KLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEA 527

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
             L R  + +    P    Y + I    ++ ++   I +++EM
Sbjct: 528 YDLFRK-MEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEM 569



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 200/442 (45%), Gaps = 22/442 (4%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G  HN  S N L  CL R N    A                + IL KM +    P    +
Sbjct: 118 GVTHNVYSLNVLINCLCRLNHVDFA----------------VSILGKMFKLGIHPTASTF 161

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
            A+I  L  E  +   + ++ EM +   E +V++Y T+I GLCK G      ++F++M++
Sbjct: 162 NALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQ 221

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           NG   D   Y  +I+ L  +  V  A + L +++D G   ++  YN ++ G C + Q ++
Sbjct: 222 NGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNE 281

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A +LF+  V  D+ PD  T+  L+    + G +     +   M +    V  ++  +   
Sbjct: 282 ATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEK--GVEPNISTYNAL 339

Query: 387 LVGK-EERIMM-ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           + G   +R+M  A  VFE +  +G +  V  YNIL+    +   + +A  L  +M    L
Sbjct: 340 MDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKAL 399

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             +++++S  +Q   + G   EA     ++     +P++  Y+ L  G CK G +D A+ 
Sbjct: 400 NPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALK 459

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L++  +      P    + + I  +  +G+ E   E+ +++  +G  P     + +I G+
Sbjct: 460 LLKS-MQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGL 518

Query: 564 CKHGTLEEARKVFTNLRERKLL 585
            K G  +EA  +F  + +   L
Sbjct: 519 LKEGLSDEAYDLFRKMEDDGFL 540



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 195/421 (46%), Gaps = 9/421 (2%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           I + L    +M R   +P V  +   +   A ++     + +  +M    V  +V +   
Sbjct: 69  IDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNV 128

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           LI  LC+   V     +  +M + GI    + +  LI GL  EGK+ +A +L  ++V  G
Sbjct: 129 LINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRG 188

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
           +  ++  YN+II GLC+      A  +F+   Q+   PD  T N ++    +   +++  
Sbjct: 189 HEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAM 248

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMG 420
           + L++M  L   +  ++  +   + G     ++  A  +F+E+ G+          IL+ 
Sbjct: 249 EFLSEM--LDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVD 306

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L + G V +A  +F  M    +E N  +++  +  +     + EA +    +I     P
Sbjct: 307 GLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAP 366

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V +YN L  G CK   +D A  L+ + + + A  P    Y+  +  +C+ G  ++ + +
Sbjct: 367 GVHSYNILINGFCKSRRMDEAKSLLAE-MYHKALNPDTVTYSTLMQGLCQFGRPKEALNI 425

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
             EM   G  PN V  S ++ G CKHG L+EA K+  +++E+KL  E N IV+  ILIE 
Sbjct: 426 FKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKL--EPN-IVHHTILIEG 482

Query: 601 M 601
           M
Sbjct: 483 M 483



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 121/310 (39%), Gaps = 61/310 (19%)

Query: 115 RRVTPDLVAEVLKVEN----NPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLF 168
           R V PD V   + V+          ++       +KG + N ++YNAL   YCL R  L 
Sbjct: 292 RDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQR--LM 349

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
             A +V E+M  QG                C P V +Y  +I      R +D    +  E
Sbjct: 350 NEAKKVFEIMIRQG----------------CAPGVHSYNILINGFCKSRRMDEAKSLLAE 393

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL------------------ 270
           M    +  D + Y TL+ GLC+ GR      +F+EM   G+L                  
Sbjct: 394 MYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGH 453

Query: 271 IDRAI-----------------YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           +D A+                 + +LIEG+   GK+  A +L   L   G R  +  Y  
Sbjct: 454 LDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTV 513

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           +I GL +    D+AY LF     D   P+  + N ++    +        +L+ +M   +
Sbjct: 514 MIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKR 573

Query: 374 FSVAADLEKF 383
           FS  A+L  F
Sbjct: 574 FS--ANLSTF 581


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 201/452 (44%), Gaps = 14/452 (3%)

Query: 181 QGRIAEMLE-ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +G   ++LE +  +M     KPDV  +  +++ L     +   + + EEM    V  D  
Sbjct: 158 EGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDET 217

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            + TL+ G  + G +     +   M E G    +    VLI G    G+V  A   ++  
Sbjct: 218 TFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQE 277

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G+  D   YN+ + GLC+      A K+ +V VQ+   PD  T N ++ C  + G++
Sbjct: 278 IADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQL 337

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           +    +L QM  +      D+  F   +       R+  ALD+  ++  KG S  V  +N
Sbjct: 338 EEAKGILNQM--VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFN 395

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+ AL ++G+   AL LF +M+      + ++++  I      G + +A +   K +E 
Sbjct: 396 ILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLL-KDMES 454

Query: 477 SQVP-SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
           +  P S   YN +  GLCK   I+ A   V D +           +   I  +C+  + +
Sbjct: 455 TGCPRSTITYNTIIDGLCKKMRIEEAEE-VFDQMDLQGISRNAITFNTLIDGLCKDKKID 513

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
              E++N+M  EG  PN +  ++I++  CK G +++A  +   +       E + + Y  
Sbjct: 514 DAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGF--EVDVVTYGT 571

Query: 596 I---LIEHMKKKTADLVLSGLKFFGLESKLKA 624
           +   L +  + + A  VL G++  G+    KA
Sbjct: 572 LINGLCKAGRTQVALKVLRGMRIKGMRPTPKA 603



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 159/355 (44%), Gaps = 21/355 (5%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+G+  +  +YN +  CL +N                G++ E   IL +M    C PD+ 
Sbjct: 314 QEGHDPDVFTYNIVVNCLCKN----------------GQLEEAKGILNQMVDRGCLPDIT 357

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            +  +I  L     L+  L +  ++    V  DV  +  LI  LCK G       LF EM
Sbjct: 358 TFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM 417

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K +G   D   Y  LI+ L   GK+GKA DLLKD+  +G       YN+II GLC+  + 
Sbjct: 418 KNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           ++A ++F+      ++ +  T N L+    +  ++D+ F+L+ QM  +   +  +   + 
Sbjct: 478 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQM--ISEGLQPNNITYN 535

Query: 385 EFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
             L    K+  I  A D+ E +   G+   V  Y  L+  L + G  + AL +   MR  
Sbjct: 536 SILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIK 595

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            +     +++  +Q      +I +A     ++ E+ + P    Y  + +GLC+ G
Sbjct: 596 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGG 650



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 169/389 (43%), Gaps = 6/389 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + L  +++   +  +PD   Y   +  L    ++   L+V + M ++  + DV  Y
Sbjct: 265 GRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTY 324

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++  LCK G++     +  +M + G L D   +  LI  L    ++ +A DL + +  
Sbjct: 325 NIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTV 384

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  +N +I  LC+V     A +LFE        PD  T N L+     +G++  
Sbjct: 385 KGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGK 444

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
              LL  ME      +          + K+ RI  A +VF+++  +G S   I +N L+ 
Sbjct: 445 ALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLID 504

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L +  ++  A  L  +M    L+ N+++++  +  + + GDI +A +    +       
Sbjct: 505 GLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEV 564

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKII 538
            V  Y  L  GLCK G    A+ ++R   G    G  PT   Y   +  + R       +
Sbjct: 565 DVVTYGTLINGLCKAGRTQVALKVLR---GMRIKGMRPTPKAYNPVLQSLFRRNNIRDAL 621

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            +  EM + G PP+ +    +  G+C+ G
Sbjct: 622 SLFREMAEVGEPPDALTYKIVFRGLCRGG 650



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 168/379 (44%), Gaps = 45/379 (11%)

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           GI  D  +Y  L+  LV   K+     +  ++   G + D+  +N+++  LCR  Q   A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS------------ 375
             + E      +APD +T   L+    E G ++   ++ A+M ++  S            
Sbjct: 201 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 260

Query: 376 -------------VAADLEKFFE--------FLVG--KEERIMMALDVFEELKGKGYS-S 411
                        +  ++   FE        F+ G  + + +  AL V + +  +G+   
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 320

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDIL-EACE 468
           V  YNI++  L + G++++A  +  +M  RG   ++ + +  IA  C   +G+ L EA +
Sbjct: 321 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC---TGNRLEEALD 377

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
              ++      P V  +N L   LCK+G+   A+ L  + + N    P E  Y   I ++
Sbjct: 378 LARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE-MKNSGCTPDEVTYNTLIDNL 436

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C  G+  K +++L +M   GCP + +  + II G+CK   +EEA +VF  +  + +    
Sbjct: 437 CSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGI--SR 494

Query: 589 NTIVYDEILIEHMKKKTAD 607
           N I ++ ++    K K  D
Sbjct: 495 NAITFNTLIDGLCKDKKID 513



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 135/311 (43%), Gaps = 44/311 (14%)

Query: 287 GKVGKACDLLKDLV----DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           G VG A DL+K LV      G++  LG+ +S +      + FD A  L            
Sbjct: 85  GAVG-ALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLI----------- 132

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
            + + PL    A+    ++   +L +  K+K      LE                  V+ 
Sbjct: 133 LNQLQPLFGIQADTVVYNHLLNVLVEGSKMKL-----LES-----------------VYS 170

Query: 403 ELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           E+  +G    V  +N LM AL    +V+ A+ +  +M    +  +  +F+  +Q  VE G
Sbjct: 171 EMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEG 230

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEF 519
            I  A     +++EM    +    N L  G CK+G ++ A+  ++     +A G  P + 
Sbjct: 231 SIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQ---EIADGFEPDQI 287

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            Y   +  +C++      ++V++ M QEG  P+    + +++ +CK+G LEEA+ +   +
Sbjct: 288 TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 347

Query: 580 RERKLLTEANT 590
            +R  L +  T
Sbjct: 348 VDRGCLPDITT 358



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 9/154 (5%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR    L++L  MR    +P   AY  +++ L    N+   L ++ EM +     D + Y
Sbjct: 580 GRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTY 639

Query: 242 VTLIMGLCKGGRVVR-GHELFREMKENGILIDRAIYGVLIEGLVGEGKVG---KACDLLK 297
             +  GLC+GG  ++   +   EM + G + + + + +L EGL+  G      +A +++ 
Sbjct: 640 KIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIM 699

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           + VD    +D+    S I G  ++++F  A   F
Sbjct: 700 EKVDL-RESDV----SAIRGYLKIRKFYDALATF 728


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 193/426 (45%), Gaps = 19/426 (4%)

Query: 183 RIAEMLEI-LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA----D 237
           R ++ ++I L +M    C P+ F+Y  +++ L  E      L +   M  D        D
Sbjct: 146 RTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPD 205

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V++Y T+I GL + G++ + + LF EM + G+  +   Y  L+ G    GK  +A  + +
Sbjct: 206 VVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFR 265

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            +   G   D+  YN+++  LC+  +  +A K+F+  V+    PD S    LL   A  G
Sbjct: 266 KMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEG 325

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKG-YSSVP 413
            +    +LL  M  ++     D    F  L+G   K   +  A+  F +++ +G + ++ 
Sbjct: 326 YLVQMHQLLDVM--VRNGTQPD-HYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIV 382

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHN 471
            Y  +M AL  +G+V  A+  F ++    L  N + F   I   C  +  D  E  E   
Sbjct: 383 TYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAE--ELAV 440

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           ++I     P+   +N L   LCK G +  A  +  D +  V        Y   I   C  
Sbjct: 441 EMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIF-DLMVRVDVQCDVITYTTLIDGYCLD 499

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           G+ ++  ++L  M  +G  PNEV  + II+G CK+G +E+A  +F  +  + +      +
Sbjct: 500 GKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGV--NPGIV 557

Query: 592 VYDEIL 597
           +Y  IL
Sbjct: 558 IYSTIL 563



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 109/443 (24%), Positives = 193/443 (43%), Gaps = 49/443 (11%)

Query: 181 QGRIAEMLEILEKM----RRNLCKPDVFAYTAMIRVLAAERNLDA--------------- 221
           + R  + L +L  M     R  C PDV +YT +I  L  E  LD                
Sbjct: 180 ENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSP 239

Query: 222 ------CL--------------RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
                 CL               ++ +M +D VE DV+ Y TL++ LCK GR +   ++F
Sbjct: 240 NCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVF 299

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             M + G   D +IYG L+ G   EG + +   LL  +V +G + D  I+N +IG   + 
Sbjct: 300 DSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKH 359

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
              D+A   F    Q  L P+  T   ++     +G++D+    ++Q ++L         
Sbjct: 360 GMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDD---AMSQFDRLISEGLTPNG 416

Query: 382 KFFEFLVGKE---ERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGK 437
             F  L+      ++   A ++  E+ G+G     I +N L+  L + G V +A  +F  
Sbjct: 417 VVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDL 476

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M  ++++ + ++++  I  +   G + EA +    ++     P+   YN +  G CK G 
Sbjct: 477 MVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGR 536

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILH-VCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           I+ A  L R  + +    P    Y+ TILH + ++       E+   M + G        
Sbjct: 537 IEDACSLFRQ-MASKGVNPGIVIYS-TILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTY 594

Query: 557 SAIISGMCKHGTLEEARKVFTNL 579
           + I+ G+C++   ++A ++F NL
Sbjct: 595 NIILQGLCQNNCTDDALRMFHNL 617



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 90/418 (21%), Positives = 188/418 (44%), Gaps = 14/418 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + +M ++L+ M RN  +PD + +  +I   A    +D  +  + +M++  +  +++
Sbjct: 323 TEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIV 382

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T++  LC+ G+V      F  +   G+  +  ++  LI GL    K  KA +L  ++
Sbjct: 383 TYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEM 442

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G   +   +N+++  LC+     +A  +F++ V+ D+  D  T   L+      G++
Sbjct: 443 IGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKV 502

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           D   KLL  M  +   V  +   +   + G  K  RI  A  +F ++  KG +  + IY+
Sbjct: 503 DEATKLLEGM--VLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYS 560

Query: 417 ILMGALLEIGEVKKA--LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
            ++  L +   +  A  LYL+    G+ L +   +++I +Q   ++    +A    + + 
Sbjct: 561 TILHGLFQTRRIAAAKELYLWMIKCGIKLPIG--TYNIILQGLCQNNCTDDALRMFHNLC 618

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSG 532
            +        +N +   L K G  D A  L    L   A G  P    Y L +  +   G
Sbjct: 619 LIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLL---ARGLVPNVVTYWLMMKSLIEQG 675

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             E++ ++   + + GC  +  + +A++  + + G + +A    + + E     EA+T
Sbjct: 676 LLEELDDLFLSLEKNGCTADSRMLNALVGKLPQKGEVRKAGVYLSKIDENNFSLEAST 733



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 122/300 (40%), Gaps = 11/300 (3%)

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV-CCAEMGRMDNFF 363
           RADL  Y+ +IG   R    D A+      ++        T +PLL   C +    D   
Sbjct: 93  RADLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMD 152

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVF-----EELKGKGYSSVPIYNIL 418
             L +M  L  +  A         +  E R   AL +      ++ +G     V  Y  +
Sbjct: 153 IALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTV 212

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  LL  G++ KA  LF +M    +  N ++++  +  +  SG   EA     K+     
Sbjct: 213 INGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGV 272

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH-VCRSGEAEKI 537
            P V  YN L   LCK G    A   V D +      P    Y  T+LH     G   ++
Sbjct: 273 EPDVVTYNTLMVYLCKNGRSMEARK-VFDSMVKKGHKPDSSIYG-TLLHGYATEGYLVQM 330

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            ++L+ M + G  P+  I + +I    KHG ++EA   F+ +R++ L    N + Y  ++
Sbjct: 331 HQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGL--HPNIVTYGTVM 388



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 11/205 (5%)

Query: 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
           A  +F+EL  +  +S+   N  + A+        AL LF +M   +L     ++SI I C
Sbjct: 51  AHHLFDELLRRDTTSIFDLNSALSAVARESPAV-ALSLFNRMPRADL----CTYSIVIGC 105

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
              +G +  A     ++I          ++ L KGLC       AM +    +  +   P
Sbjct: 106 CSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIALRRMPALGCTP 165

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEM----TQEGCPPNEVICSAIISGMCKHGTLEEA 572
             F Y + +  +C    +++ + +L+ M    T+ GCPP+ V  + +I+G+ + G L++A
Sbjct: 166 NAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKA 225

Query: 573 RKVFTNLRERKLLTEANTIVYDEIL 597
             +F  + ++ +    N I Y+ +L
Sbjct: 226 YCLFDEMLDQGM--SPNCITYNCLL 248



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 85/190 (44%), Gaps = 10/190 (5%)

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVE-SGDILEACECHN 471
           Y+I++G     G +  A    G++        +++FS  ++  CH + + D ++      
Sbjct: 99  YSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIAL--R 156

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHV 528
           ++  +   P+  +YN L KGLC       A+ L+   + +   G   P    Y   I  +
Sbjct: 157 RMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGL 216

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
            R G+ +K   + +EM  +G  PN +  + ++ G C  G  +EA  +F  +    +  E 
Sbjct: 217 LREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGV--EP 274

Query: 589 NTIVYDEILI 598
           + + Y+ +++
Sbjct: 275 DVVTYNTLMV 284



 Score = 38.9 bits (89), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 39/208 (18%), Positives = 85/208 (40%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GRI +   +  +M      P +  Y+ ++  L   R + A   ++  M K  ++  +  
Sbjct: 534 NGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGT 593

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  ++ GLC+         +F  +      +    + ++I+ L+  G+  +A DL   L+
Sbjct: 594 YNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLL 653

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   ++  Y  ++  L      ++   LF    ++    D   +N L+    + G + 
Sbjct: 654 ARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTADSRMLNALVGKLPQKGEVR 713

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLV 388
                L+++++  FS+ A   +   FLV
Sbjct: 714 KAGVYLSKIDENNFSLEASTAESLVFLV 741


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 201/452 (44%), Gaps = 14/452 (3%)

Query: 181 QGRIAEMLE-ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +G   ++LE +  +M     KPDV  +  +++ L     +   + + EEM    V  D  
Sbjct: 158 EGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDET 217

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            + TL+ G  + G +     +   M E G    +    VLI G    G+V  A   ++  
Sbjct: 218 TFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQE 277

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G+  D   YN+ + GLC+      A K+ +V VQ+   PD  T N ++ C  + G++
Sbjct: 278 IADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQL 337

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           +    +L QM  +      D+  F   +       R+  ALD+  ++  KG S  V  +N
Sbjct: 338 EEAKGILNQM--VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFN 395

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+ AL ++G+   AL LF +M+      + ++++  I      G + +A +   K +E 
Sbjct: 396 ILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLL-KDMES 454

Query: 477 SQVP-SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
           +  P S   YN +  GLCK   I+ A   V D +           +   I  +C+  + +
Sbjct: 455 TGCPRSTITYNTIIDGLCKKMRIEEAEE-VFDQMDLQGISRNAITFNTLIDGLCKDKKID 513

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
              E++N+M  EG  PN +  ++I++  CK G +++A  +   +       E + + Y  
Sbjct: 514 DAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGF--EVDVVTYGT 571

Query: 596 I---LIEHMKKKTADLVLSGLKFFGLESKLKA 624
           +   L +  + + A  VL G++  G+    KA
Sbjct: 572 LINGLCKAGRTQVALKVLRGMRIKGMRPTPKA 603



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 159/355 (44%), Gaps = 21/355 (5%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+G+  +  +YN +  CL +N                G++ E   IL +M    C PD+ 
Sbjct: 314 QEGHDPDVFTYNIVVNCLCKN----------------GQLEEAKGILNQMVDRGCLPDIT 357

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            +  +I  L     L+  L +  ++    V  DV  +  LI  LCK G       LF EM
Sbjct: 358 TFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM 417

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K +G   D   Y  LI+ L   GK+GKA DLLKD+  +G       YN+II GLC+  + 
Sbjct: 418 KNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           ++A ++F+      ++ +  T N L+    +  ++D+ F+L+ QM  +   +  +   + 
Sbjct: 478 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQM--ISEGLQPNNITYN 535

Query: 385 EFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
             L    K+  I  A D+ E +   G+   V  Y  L+  L + G  + AL +   MR  
Sbjct: 536 SILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIK 595

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            +     +++  +Q      +I +A     ++ E+ + P    Y  + +GLC+ G
Sbjct: 596 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGG 650



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 169/389 (43%), Gaps = 6/389 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + L  +++   +  +PD   Y   +  L    ++   L+V + M ++  + DV  Y
Sbjct: 265 GRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTY 324

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++  LCK G++     +  +M + G L D   +  LI  L    ++ +A DL + +  
Sbjct: 325 NIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTV 384

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  +N +I  LC+V     A +LFE        PD  T N L+     +G++  
Sbjct: 385 KGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGK 444

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
              LL  ME      +          + K+ RI  A +VF+++  +G S   I +N L+ 
Sbjct: 445 ALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLID 504

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L +  ++  A  L  +M    L+ N+++++  +  + + GDI +A +    +       
Sbjct: 505 GLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEV 564

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKII 538
            V  Y  L  GLCK G    A+ ++R   G    G  PT   Y   +  + R       +
Sbjct: 565 DVVTYGTLINGLCKAGRTQVALKVLR---GMRIKGMRPTPKAYNPVLQSLFRRNNIRDAL 621

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            +  EM + G PP+ +    +  G+C+ G
Sbjct: 622 SLFREMAEVGEPPDALTYKIVFRGLCRGG 650



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 168/379 (44%), Gaps = 45/379 (11%)

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           GI  D  +Y  L+  LV   K+     +  ++   G + D+  +N+++  LCR  Q   A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS------------ 375
             + E      +APD +T   L+    E G ++   ++ A+M ++  S            
Sbjct: 201 VIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 260

Query: 376 -------------VAADLEKFFE--------FLVG--KEERIMMALDVFEELKGKGYS-S 411
                        +  ++   FE        F+ G  + + +  AL V + +  +G+   
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 320

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDIL-EACE 468
           V  YNI++  L + G++++A  +  +M  RG   ++ + +  IA  C   +G+ L EA +
Sbjct: 321 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC---TGNRLEEALD 377

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
              ++      P V  +N L   LCK+G+   A+ L  + + N    P E  Y   I ++
Sbjct: 378 LARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE-MKNSGCTPDEVTYNTLIDNL 436

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C  G+  K +++L +M   GCP + +  + II G+CK   +EEA +VF  +  + +    
Sbjct: 437 CSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGI--SR 494

Query: 589 NTIVYDEILIEHMKKKTAD 607
           N I ++ ++    K K  D
Sbjct: 495 NAITFNTLIDGLCKDKKID 513



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 135/311 (43%), Gaps = 44/311 (14%)

Query: 287 GKVGKACDLLKDLV----DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           G VG A DL+K LV      G++  LG+ +S +      + FD A  L            
Sbjct: 85  GAVG-ALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLI----------- 132

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
            + + PL    A+    ++   +L +  K+K      LE                  V+ 
Sbjct: 133 LNQLQPLFGIQADTVVYNHLLNVLVEGSKMKL-----LES-----------------VYS 170

Query: 403 ELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           E+  +G    V  +N LM AL    +V+ A+ +  +M    +  +  +F+  +Q  VE G
Sbjct: 171 EMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEG 230

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEF 519
            I  A     +++EM    +    N L  G CK+G ++ A+  ++     +A G  P + 
Sbjct: 231 SIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQ---EIADGFEPDQI 287

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            Y   +  +C++      ++V++ M QEG  P+    + +++ +CK+G LEEA+ +   +
Sbjct: 288 TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 347

Query: 580 RERKLLTEANT 590
            +R  L +  T
Sbjct: 348 VDRGCLPDITT 358



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 9/154 (5%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR    L++L  MR    +P   AY  +++ L    N+   L ++ EM +     D + Y
Sbjct: 580 GRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTY 639

Query: 242 VTLIMGLCKGGRVVR-GHELFREMKENGILIDRAIYGVLIEGLVGEGKVG---KACDLLK 297
             +  GLC+GG  ++   +   EM + G + + + + +L EGL+  G      +A +++ 
Sbjct: 640 KIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIM 699

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           + VD    +D+    S I G  ++++F  A   F
Sbjct: 700 EKVDL-RESDV----SAIRGYLKIRKFYDALATF 728


>gi|449453792|ref|XP_004144640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Cucumis sativus]
          Length = 566

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 117/480 (24%), Positives = 206/480 (42%), Gaps = 60/480 (12%)

Query: 134 LASKFFHWAGK-QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
           L   FFH     +KG K +      L Y L +    R A +V E+M   G I        
Sbjct: 78  LNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGII-------- 129

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
                   PD  +YT ++  L  + N+   +++ ++M++     +   Y +L+ GLC  G
Sbjct: 130 --------PDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHG 181

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
            + +  +L   + + G++ +   Y  L+E    E    +A  LL +++  G + +L  YN
Sbjct: 182 NLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYN 241

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
            ++ GLC+  + + A +LF        +P+  + N LL      GR +    LLA+M+  
Sbjct: 242 VLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMD-- 299

Query: 373 KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKAL 432
                           G E                   S   YNIL+G+L   G  + AL
Sbjct: 300 ----------------GDERS----------------PSTVTYNILIGSLTLHGRTEHAL 327

Query: 433 YLFGKMRGLNLEVNSLSFS--IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
            +  +M     +  + S++  IA  C     D++   +C ++++     P+   YN +  
Sbjct: 328 EVLEEMIRARFKPTASSYNPIIARLCKDRKVDLV--VKCLDQMMYRHCNPNEGTYNAIAT 385

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
            LC+ G +  A  +++  LGN     T+  Y + I  +CR G      ++L EMT+ G  
Sbjct: 386 -LCEEGMVQEAFSIIQS-LGNKQHFSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFT 443

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVL 610
           P+    S++I G+C  G L EA ++F+ + E   L   N   Y+ +++   K +  DL L
Sbjct: 444 PDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENIKLDTEN---YNSLILGCCKSRRTDLAL 500



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 92/409 (22%), Positives = 172/409 (42%), Gaps = 34/409 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ GY  N A+YN+L   L  +                G + + L++L+++ +    P+ 
Sbjct: 159 EEYGYPTNTATYNSLVRGLCMH----------------GNLTQSLQLLDRLIQKGLVPNA 202

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           + Y+ ++     ER  D   ++ +E+     + ++++Y  L+ GLCK GR     +LFRE
Sbjct: 203 YTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTEDAMQLFRE 262

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +   G   +   Y +L+  L  EG+  +A  LL ++           YN +IG L    +
Sbjct: 263 LPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGR 322

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-------EKLKFSV 376
            + A ++ E  ++    P  S+ NP++    +  ++D   K L QM        +  ++ 
Sbjct: 323 TEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVVKCLDQMMYRHCNPNEGTYNA 382

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGK-GYSSVPIYNILMGALLEIGEVKKALYLF 435
            A L         +E  +  A  + + L  K  +S+   Y I++ +L   G    A  L 
Sbjct: 383 IATL--------CEEGMVQEAFSIIQSLGNKQHFSTQEFYKIVITSLCRKGNTYPAFQLL 434

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M       +S ++S  I+     G + EA E  + ++E +       YN L  G CK 
Sbjct: 435 YEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFS-VMEENIKLDTENYNSLILGCCKS 493

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
              D A+ +    +G       E  Y + +  +    E +   EVL E+
Sbjct: 494 RRTDLALDVFEIMVGK-GYLANETTYTILVEGIIHEKEMDLATEVLREL 541


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 189/411 (45%), Gaps = 4/411 (0%)

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221
           LSR+ L   +  V +L+  +G++ +  E +  M     KP+V +Y  +I   ++  N++ 
Sbjct: 169 LSRDRLSVKSSIVFDLL--EGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEG 226

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
             R+ + M+   +E D   Y +LI G+CK GR+     LF +M E G++ +   Y  LI+
Sbjct: 227 ARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLID 286

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
           G   +G + +A     ++V  G    +  YN ++  L    +  +A  + +   +  + P
Sbjct: 287 GYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIP 346

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVF 401
           D  T N L+   +  G     F L  +M                +++ +  R+  A D+F
Sbjct: 347 DAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLF 406

Query: 402 EELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
           E++  +G S  V ++N ++      G V++A  L  +M   ++  + ++F+  +Q     
Sbjct: 407 EKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCRE 466

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
           G + EA    +++      P   +YN L  G  + G+I  A   VRD + ++   PT   
Sbjct: 467 GKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFX-VRDEMLSIGFNPTLLT 525

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
           Y   I  +C++ E +   E+L EM  +G  P++    ++I GM    TL E
Sbjct: 526 YNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLVE 576



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 115/492 (23%), Positives = 203/492 (41%), Gaps = 63/492 (12%)

Query: 92  ITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVL-KVENNPTLASKFFHWAGKQKGYKH 150
           I+ +   +Q+ +  QV   L      TP L++ VL  + + P L S F H       + H
Sbjct: 74  ISKSVLSSQWHFIEQVSPNL------TPALISNVLYNLCSKPQLVSDFIHHL-----HPH 122

Query: 151 NFASYNALAYCLSRNNLFR------AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
                +  +YCL+   L R      A   + ++M++  RIA   E+ +++       D  
Sbjct: 123 ---CLDTKSYCLAVVLLARLPSPKLALQLLKQVMET--RIATNRELFDELT---LSRDRL 174

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
           +  + I     E  L         M+    + +V++Y T+I G    G +     +   M
Sbjct: 175 SVKSSIVFDLLEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAM 234

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           +  GI  D   YG LI G+  EG++ +A  L   +V+ G   +   YN++I G C     
Sbjct: 235 RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDL 294

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           ++A+   +  V+  + P  ST N L+      GRM                         
Sbjct: 295 ERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGE----------------------- 331

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNL 443
                       A D+ +E++ KG     I YNIL+      G  K+A  L  +M    +
Sbjct: 332 ------------ADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGI 379

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
           E   ++++  I        + EA +   KI++    P V  +N +  G C  G ++ A M
Sbjct: 380 EPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFM 439

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L+++ +   +  P E  +   +   CR G+ E+   +L+EM   G  P+ +  + +ISG 
Sbjct: 440 LLKE-MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGY 498

Query: 564 CKHGTLEEARKV 575
            + G +++A  V
Sbjct: 499 GRRGDIKDAFXV 510



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 99/224 (44%), Gaps = 19/224 (8%)

Query: 139 FHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNL 198
            H     KG +    +Y +L Y LSR N  + AD + E +  QG                
Sbjct: 370 LHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQG---------------- 413

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
             PDV  + AMI    A  N++    + +EM +  V  D + + TL+ G C+ G+V    
Sbjct: 414 VSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEAR 473

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L  EMK  GI  D   Y  LI G    G +  A  +  +++  G+   L  YN++I  L
Sbjct: 474 MLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCL 533

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           C+ ++ D A +L +  V   ++PD ST   L+     MG +D  
Sbjct: 534 CKNQEGDLAEELLKEMVNKGISPDDSTYLSLI---EGMGNVDTL 574



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 524 TILHVCRS-GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           TI+H   S G  E    +L+ M  +G  P+     ++ISGMCK G LEEA  +F  + E 
Sbjct: 213 TIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEI 272

Query: 583 KLLTEANTIVYDEIL 597
            L+   N + Y+ ++
Sbjct: 273 GLV--PNAVTYNTLI 285


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 112/462 (24%), Positives = 217/462 (46%), Gaps = 18/462 (3%)

Query: 161 CLSRNNLFRAADQV---PELM-----DSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRV 212
           C  + N FR   +V    EL+      S+G +A  L   + M      P VF Y  +I  
Sbjct: 203 CFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLA--LSFFKDMVVAGLSPSVFTYNMVIGC 260

Query: 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           LA E +L+A   ++EEMK   +  D++ Y +LI G  K G +     +F EMK+ G   D
Sbjct: 261 LAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPD 320

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              Y  LI       ++ +A + L  +   G + ++  Y+++I   C+     +A K F 
Sbjct: 321 VITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFV 380

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--K 390
             ++  L P+  T   L+    ++G ++  FKL ++M++    V  ++  +   L G  +
Sbjct: 381 DMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQA--GVNLNIVTYTALLDGLCE 438

Query: 391 EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
           + R+  A ++F  L   G++ +  IY  L    ++   ++KA+ +  +M   NL+ + L 
Sbjct: 439 DGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLL 498

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           +   I       +I ++     ++++     +   Y  L     K+G+   A+ L+++ +
Sbjct: 499 YGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQE-M 557

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
            ++    T   Y + I  +C+ G  ++ +   + MT+ G  PN +I +A+I G+CK+  L
Sbjct: 558 QDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCL 617

Query: 570 EEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLS 611
           EEA+ +F  + ++ +    + +VY  ++  +MK       LS
Sbjct: 618 EEAKNLFNEMLDKGI--SPDKLVYTSLIDGNMKHGNPGEALS 657



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 183/427 (42%), Gaps = 18/427 (4%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G   +  +YN +  CL+R     AA  + E M ++G                 +PD+  Y
Sbjct: 246 GLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKG----------------LRPDIVTY 289

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
            ++I        L   + V+EEMK    E DV+ Y +LI   CK  R+ +  E    MK+
Sbjct: 290 NSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQ 349

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G+  +   Y  LI+     G + +A     D++  G + +   Y S+I   C++   ++
Sbjct: 350 RGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNE 409

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A+KL     Q  +  +  T   LL    E GRM    +L   + K  +++   +      
Sbjct: 410 AFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFH 469

Query: 387 LVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
              K + +  A+D+ EE+  K     + +Y   +  L    E++ ++ +  +M    L  
Sbjct: 470 GYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTA 529

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           NS  ++  I  + + G   EA     ++ ++    +V  Y  L  GLCKIG +  A+   
Sbjct: 530 NSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYF 589

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
            D +      P    Y   I  +C++   E+   + NEM  +G  P++++ +++I G  K
Sbjct: 590 -DHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMK 648

Query: 566 HGTLEEA 572
           HG   EA
Sbjct: 649 HGNPGEA 655



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/492 (21%), Positives = 211/492 (42%), Gaps = 28/492 (5%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177
           T ++V   L  E +   A   F    K KG + +  +YN+L     +  +   A  V E 
Sbjct: 253 TYNMVIGCLAREGDLEAARSLFE-EMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEE 311

Query: 178 MDSQG-------------------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
           M   G                   RI +  E L  M++   +P+V  Y+ +I        
Sbjct: 312 MKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGM 371

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
           L    + + +M +  ++ +   Y +LI   CK G +    +L  EM++ G+ ++   Y  
Sbjct: 372 LLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTA 431

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           L++GL  +G++ +A +L   L+ +G+  +  IY S+  G  + K  +KA  + E   + +
Sbjct: 432 LLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKN 491

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF---EFLVGKEERIM 395
           L PD       +        +++   ++ +M     +  + +        F VGK     
Sbjct: 492 LKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTE-- 549

Query: 396 MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
            A+++ +E++  G   +V  Y +L+  L +IG V++A+  F  M    L+ N + ++  I
Sbjct: 550 -AVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALI 608

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
               ++  + EA    N++++    P    Y  L  G  K G    A+ L R+ +  +  
Sbjct: 609 DGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSL-RNRMVEIGM 667

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
                 Y   I    R G+ +    +L+EM ++G  P++V+C  ++    + G + EA  
Sbjct: 668 ELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALA 727

Query: 575 VFTNLRERKLLT 586
           +  ++  R L++
Sbjct: 728 LHDDMARRGLIS 739


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 113/500 (22%), Positives = 225/500 (45%), Gaps = 33/500 (6%)

Query: 105 PQVVTELSKL-RRVTPDLVAEVLKVENNPTLASKFFHWAGK-QKGYK-HNFASYNALAYC 161
           P+    L+K  R + P+ V  VL+V  +  ++  FF W  +  +G   HN  + N L   
Sbjct: 19  PEAEAALAKYSRNLVPNTVGRVLQVIKDVDVSLFFFRWVTRSHRGESIHNNFTCNCLLRT 78

Query: 162 LSRNNLFRAADQV--PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL 219
           L +      A Q+   EL+                    C  +   Y  +I       ++
Sbjct: 79  LVKARRHHQAYQIFRDELLGQH-----------------CDTNHITYNTLIGGFCKAGDM 121

Query: 220 DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL 279
           +   ++  EMK+     DV+ + +++  LC  G + R  + FRE  E     D  ++ +L
Sbjct: 122 ERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVECAP--DSVLFNIL 179

Query: 280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339
           + GL    ++ +A  +++++ + G   D+  YNS+I GLC+  + ++A +L E  V+  +
Sbjct: 180 VHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKV 239

Query: 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMA 397
            P+  T N L+    + G      +L+ +M  ++     D+  F   + G  ++ +I  A
Sbjct: 240 RPNLVTYNTLIYGYCKTGCTGLAHQLIERM--IQSGTHPDVVTFNSLISGFCQKSKIDKA 297

Query: 398 LDVFEELK-GKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
            +V   +K G    ++  YN+L+  L + G   +A  L  +M G  +  + ++++  I  
Sbjct: 298 CEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGI 357

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
              +  I +A +  N ++E   +P   +Y  L   L K    D A  L+ D + +  + P
Sbjct: 358 FCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALL-DNMFDAGAIP 416

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
             F +   +  +C S   ++   +L  M + GC P       +++G+CK G +++A++V 
Sbjct: 417 NLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVL 476

Query: 577 TNLRE---RKLLTEANTIVY 593
             +     + L++ + TIV+
Sbjct: 477 VMMVSEGIQPLVSSSGTIVH 496



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 94/441 (21%), Positives = 181/441 (41%), Gaps = 55/441 (12%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           +  ++ S G   E    L K  RNL  P+        RVL   +++D  L  +  + +  
Sbjct: 8   IVAILTSVGDRPEAEAALAKYSRNLV-PNTVG-----RVLQVIKDVDVSLFFFRWVTRSH 61

Query: 234 VEADVMAYVT---LIMGLCKGGRVVRGHELFR-EMKENGILIDRAIYGVLIEGLVGEGKV 289
               +    T   L+  L K  R  + +++FR E+       +   Y  LI G    G +
Sbjct: 62  RGESIHNNFTCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDM 121

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            +A  LL ++ + G+  D+  ++SI+  LC      +A + F  +V+   APD    N L
Sbjct: 122 ERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVE--CAPDSVLFNIL 179

Query: 350 L--VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK 407
           +  +C                                     K  ++  A  + EE+  +
Sbjct: 180 VHGLC-------------------------------------KANQLSEARQMIEEMSER 202

Query: 408 G-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           G    V  YN L+  L +   +++A  L   M    +  N ++++  I  + ++G    A
Sbjct: 203 GIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLA 262

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
            +   ++I+    P V  +N L  G C+  +ID A  ++   +      P    Y + I 
Sbjct: 263 HQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLH-LMKKGLCAPNLVTYNVLIS 321

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
            +C +G A +  E+L+EM   G  P+ +  +++I   C++  +E+A ++   + ER ++ 
Sbjct: 322 GLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIP 381

Query: 587 EANTIVYDEILIEHMKKKTAD 607
           +   I Y  + +  +K +  D
Sbjct: 382 DG--ISYCTLAVALLKSERFD 400


>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 808

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 187/420 (44%), Gaps = 10/420 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+I E   +++      C P V  Y  +I     + +L    R  +E+K   V   V  Y
Sbjct: 215 GKIEEGRRLVKDRWGKGCVPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETY 274

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G CK G      +L  EM   G+ ++  ++  +I+     G V KA + ++ + +
Sbjct: 275 GALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAE 334

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  YN++I   C+  +  +A +  E   +  L P+  +  PL+    + G   +
Sbjct: 335 MGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQG---D 391

Query: 362 FFKLLAQMEKL-KFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
           + K    + ++ +     DL  +  F+ G      I +AL V E++  KG +    IYN+
Sbjct: 392 YVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNV 451

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           LM  L + G       L  +M   N++ +   F+  +   + +G++ EA +    II   
Sbjct: 452 LMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKG 511

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P +  YN + KG CK G++  A+  +   + NV   P E+ Y+  I    +  +    
Sbjct: 512 VDPGIVGYNAMIKGFCKFGKMTDALSCLNK-MKNVHHAPDEYTYSTVIDGYVKQHDMSSA 570

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +++  +M +    PN +  +++I+G CK   +  A KVF  ++   L+   N + Y  ++
Sbjct: 571 LKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFRGMKSFDLV--PNVVTYTTLV 628



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 102/475 (21%), Positives = 185/475 (38%), Gaps = 61/475 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR-------------------I 184
           K KG      +Y AL     +   F A DQ+   M ++G                    +
Sbjct: 263 KMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFKYGLV 322

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            +  E + +M    C PD+  Y  MI        +       E+ K+  +  +  +Y  L
Sbjct: 323 TKAAETMRRMAEMGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPL 382

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           +   CK G  V+   +   + E G   D   YG  I G+V  G++  A  + + +++ G 
Sbjct: 383 MHAYCKQGDYVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGV 442

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D  IYN ++ GLC+  +F     L    +  ++ PD      L         MD F +
Sbjct: 443 FPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATL---------MDGFIR 493

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
                         +L++              A+ +F+ +  KG    +  YN ++    
Sbjct: 494 ------------NGELDE--------------AIKIFKVIIRKGVDPGIVGYNAMIKGFC 527

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G++  AL    KM+ ++   +  ++S  I  +V+  D+  A +   ++++    P+V 
Sbjct: 528 KFGKMTDALSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVI 587

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            Y  L  G CK  ++  A  + R  + +    P    Y   +    ++G+ EK   +   
Sbjct: 588 TYTSLINGFCKKADMIRAEKVFRG-MKSFDLVPNVVTYTTLVGGFFKAGKPEKATSIFEL 646

Query: 544 MTQEGCPPNEVICSAIISGMCKHGT---LEEARKVFTNLRERKLLTEANTIVYDE 595
           M   GCPPN+     +I+G+    T   L E +    N  ER L+ +  T++  E
Sbjct: 647 MLMNGCPPNDATFHYLINGLTNTATSPVLIEEKDSMEN--ERSLILDFFTMMLSE 699



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/413 (21%), Positives = 182/413 (44%), Gaps = 20/413 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI E  E LEK +     P+ F+YT ++     + +      +   + +   + D+++Y
Sbjct: 355 GRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGMLFRIAEIGEKPDLVSY 414

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
              I G+   G +     +  +M E G+  D  IY VL+ GL   G+      LL +++D
Sbjct: 415 GAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLD 474

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              + D+ ++ +++ G  R  + D+A K+F+V ++  + P     N ++    + G+M +
Sbjct: 475 RNVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTD 534

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYNIL 418
               L +M+ +    A D   +   + G  K+  +  AL +F ++ K K   +V  Y  L
Sbjct: 535 ALSCLNKMKNVHH--APDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSL 592

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    +  ++ +A  +F  M+  +L  N ++++  +    ++G   +A      ++    
Sbjct: 593 INGFCKKADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMNGC 652

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF--------------KYALT 524
            P+ A ++ L  GL         ++  +D + N  S   +F               Y   
Sbjct: 653 PPNDATFHYLINGLTNTAT-SPVLIEEKDSMENERSLILDFFTMMLSEGWDQVIAAYNSV 711

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
           I+ +C+ G  +    +L +M  +G   + V  +A++ G+C  G  +E R + +
Sbjct: 712 IVCLCKHGMVDTAQLLLTKMLTKGFLIDSVCFTAMLHGLCHKGKSKEWRNIIS 764



 Score = 38.9 bits (89), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 84/207 (40%), Gaps = 39/207 (18%)

Query: 129 ENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYC-----LSRNNLFRAA---DQVPELM 178
           +++ + A K F    K K +K N  +Y +L   +C     +    +FR     D VP ++
Sbjct: 564 QHDMSSALKMFGQMMKHK-FKPNVITYTSLINGFCKKADMIRAEKVFRGMKSFDLVPNVV 622

Query: 179 D---------SQGRIAEMLEILEKMRRNLCKPD--VFAY-------TAMIRVLAAERN-- 218
                       G+  +   I E M  N C P+   F Y       TA   VL  E++  
Sbjct: 623 TYTTLVGGFFKAGKPEKATSIFELMLMNGCPPNDATFHYLINGLTNTATSPVLIEEKDSM 682

Query: 219 ---LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
                  L  +  M  +  +  + AY ++I+ LCK G V     L  +M   G LID   
Sbjct: 683 ENERSLILDFFTMMLSEGWDQVIAAYNSVIVCLCKHGMVDTAQLLLTKMLTKGFLIDSVC 742

Query: 276 YGVLIEGLVGEGKVGK-----ACDLLK 297
           +  ++ GL  +GK  +     +CDL K
Sbjct: 743 FTAMLHGLCHKGKSKEWRNIISCDLNK 769


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 178/370 (48%), Gaps = 8/370 (2%)

Query: 228 EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGE 286
           E+ + +   + + Y T+I G C  GRV    ++ REM+E  GI  ++  YG +I G    
Sbjct: 175 ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 234

Query: 287 GKVGKACDLLKDLVDSG-YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           G+V +A  +  +++  G  + +  +YN++IGG C   + D A    +  V+  +A   +T
Sbjct: 235 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 294

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE 403
            N L+      GR    ++L+ +M      +A D+  +   + G  KE  +  AL++FE 
Sbjct: 295 YNLLVHALFMDGRGTEAYELVEEMGG--KGLALDVFTYNILINGHCKEGNVKKALEIFEN 352

Query: 404 LKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
           +  +G  ++V  Y  L+ AL + G+V++   LF +     +  + + ++  I  H  SG+
Sbjct: 353 MSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGN 412

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
           I  A E   ++ +    P    YN L +GLC +G +D A  L+ D +      P    Y 
Sbjct: 413 IDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLI-DEMTKRGIQPDLVTYN 471

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             I      G+ +  + + NEM  +G  P  +  +A+I G+CK+G  ++A  +   + E 
Sbjct: 472 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 531

Query: 583 KLLTEANTIV 592
            +  + +T +
Sbjct: 532 GITPDDSTYI 541



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 151/331 (45%), Gaps = 35/331 (10%)

Query: 182 GRIAEMLEILEKM-RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           GR+ E +++ ++M  +   KP+   Y A+I     +  LD  L   + M +  V   V  
Sbjct: 235 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 294

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+  L   GR    +EL  EM   G+ +D   Y +LI G   EG V KA ++ +++ 
Sbjct: 295 YNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMS 354

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G RA +  Y S+I  L +  Q  +  KLF+  V+  + PD    N L+   +  G +D
Sbjct: 355 RRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNID 414

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
             F+++ +MEK +  +A D                   DV              YN LM 
Sbjct: 415 RAFEIMGEMEKKR--IAPD-------------------DV-------------TYNTLMR 440

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L  +G V +A  L  +M    ++ + ++++  I  +   GD+ +A    N+++     P
Sbjct: 441 GLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 500

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
           ++  YN L +GLCK G+ D A  +V++ + N
Sbjct: 501 TLLTYNALIQGLCKNGQGDDAENMVKEMVEN 531



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 152/352 (43%), Gaps = 48/352 (13%)

Query: 248 LCKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           LC  G+  R  EL R+M + N +      Y  +I G    G+V  A D+++++ + G  A
Sbjct: 164 LCSAGKPARALELLRQMPRPNAV-----TYNTVIAGFCSRGRVQAALDIMREMRERGGIA 218

Query: 307 -DLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
            +   Y ++I G C+V + D+A K+F E+  + ++ P+    N L+    + G++D    
Sbjct: 219 PNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALL 278

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
              +M +   ++           +  + R   A ++ EE+ GKG +  V  YNIL+    
Sbjct: 279 YRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHC 338

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G VKKAL +F  M    +    ++++  I    + G + E  +  ++ +     P + 
Sbjct: 339 KEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLV 398

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            YN L       G ID A                                     E++ E
Sbjct: 399 LYNALINSHSTSGNIDRA------------------------------------FEIMGE 422

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIV 592
           M ++   P++V  + ++ G+C  G ++EARK+   + +R +   L   NT++
Sbjct: 423 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLI 474



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 98/201 (48%), Gaps = 16/201 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G +    +Y +L Y LS+                +G++ E  ++ ++  R   +PD+ 
Sbjct: 355 RRGVRATVVTYTSLIYALSK----------------KGQVQETDKLFDEAVRRGIRPDLV 398

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y A+I   +   N+D    +  EM+K  +  D + Y TL+ GLC  GRV    +L  EM
Sbjct: 399 LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM 458

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            + GI  D   Y  LI G   +G V  A  +  ++++ G+   L  YN++I GLC+  Q 
Sbjct: 459 TKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQG 518

Query: 325 DKAYKLFEVTVQDDLAPDFST 345
           D A  + +  V++ + PD ST
Sbjct: 519 DDAENMVKEMVENGITPDDST 539



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 115/261 (44%), Gaps = 5/261 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG++   L   ++M        V  Y  ++  L  +        + EEM    +  DV  
Sbjct: 270 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFT 329

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK G V +  E+F  M   G+      Y  LI  L  +G+V +   L  + V
Sbjct: 330 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAV 389

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G R DL +YN++I         D+A+++     +  +APD  T N L+     +GR+D
Sbjct: 390 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 449

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYS-SVPIYNI 417
              KL+ +M   K  +  DL  +   + G   +  +  AL +  E+  KG++ ++  YN 
Sbjct: 450 EARKLIDEMT--KRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNA 507

Query: 418 LMGALLEIGEVKKALYLFGKM 438
           L+  L + G+   A  +  +M
Sbjct: 508 LIQGLCKNGQGDDAENMVKEM 528



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 5/163 (3%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           S+PI    +  LL       A  LF  M  L L + + +F+I ++    +G    A E  
Sbjct: 118 SLPISTASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALE-- 175

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
             ++     P+   YN +  G C  G + AA+ ++R+        P ++ Y   I   C+
Sbjct: 176 --LLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCK 233

Query: 531 SGEAEKIIEVLNEMTQEG-CPPNEVICSAIISGMCKHGTLEEA 572
            G  ++ ++V +EM  +G   P  V+ +A+I G C  G L+ A
Sbjct: 234 VGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTA 276



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 55/105 (52%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E  +++++M +   +PD+  Y  +I   + + ++   LR+  EM        ++ Y
Sbjct: 446 GRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTY 505

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
             LI GLCK G+      + +EM ENGI  D + Y  LIEGL  E
Sbjct: 506 NALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 550


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 181/418 (43%), Gaps = 47/418 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G  A    +++KM    C+PDV  Y+ +I  L  +R ++  L ++  MK   +   V++Y
Sbjct: 210 GETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSY 269

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI GLC   R      +  EM    I+ D   + +LI+    EG V +A  +LK + +
Sbjct: 270 TSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTE 329

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++  YNS++ G     +  +A KLF+V +     PD  + + L+     + R+D 
Sbjct: 330 MGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDE 389

Query: 362 FFKLLAQMEKLKF-----SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIY 415
             +L  +M          S    +  F +    +E R     ++F+++   GY   +  Y
Sbjct: 390 AKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREAR-----ELFKDMHTNGYLPDLCTY 444

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           ++L+    + G + KA  LF  M+G  L+ N + ++I I    +SG++  A +  +++  
Sbjct: 445 SVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFV 504

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P V  Y  +  GLCK G +D A+                                 
Sbjct: 505 HGLQPDVQIYTTIINGLCKEGLLDEAL--------------------------------- 531

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
              E   +M ++GCPPNE   + II G  +H     A ++   +R++  + +  T  +
Sbjct: 532 ---EAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVADEGTTAW 586



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 176/397 (44%), Gaps = 6/397 (1%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
             +L K+ +   +P +  +T +I  L         L ++++M     + DV  Y T+I G
Sbjct: 146 FSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIING 205

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK G       L ++M E G   D   Y  LI+ L  +  V +A D+   +   G    
Sbjct: 206 LCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPT 265

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  Y S+I GLC   ++ +A  +       ++ PD  T + L+    + G +     +L 
Sbjct: 266 VVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLK 325

Query: 368 QMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
            M ++   V  ++  +   + G   +  ++ A  +F+ +  +G    V  Y+IL+     
Sbjct: 326 TMTEM--GVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCM 383

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
           +  + +A  LF +M    L  N++S++  I    + G + EA E    +     +P +  
Sbjct: 384 VKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCT 443

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y+ L +G CK G +  A  L R   G     P    Y + I  +C+SG      ++ +E+
Sbjct: 444 YSVLLEGFCKQGYLGKAFRLFRAMQGTYLK-PNLVMYTILIDSMCKSGNLNHARKLFSEL 502

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              G  P+  I + II+G+CK G L+EA + F  + E
Sbjct: 503 FVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEE 539



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/466 (24%), Positives = 200/466 (42%), Gaps = 20/466 (4%)

Query: 165 NNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLR 224
           N L  A  ++ +  D+   +++ +E L  +  N C  ++     +I      +++D    
Sbjct: 94  NKLLSAIVRMRQYYDAVISLSKQME-LAGLSPNTCTLNI-----LINCFCLMQHVDLGFS 147

Query: 225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
           V  ++ K  ++  ++ + TLI GLCK G   +  ELF +M   G   D   Y  +I GL 
Sbjct: 148 VLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLC 207

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
             G+   A  L+K + + G + D+  Y+++I  LC+ +  ++A  +F       ++P   
Sbjct: 208 KMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVV 267

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF--LVGKEERIMMALDVFE 402
           +   L+       R      +L +M  L  ++  D+  F     +  KE  ++ A  V +
Sbjct: 268 SYTSLIQGLCSFSRWKEASAMLNEMTSL--NIMPDIVTFSLLIDIFCKEGNVLEAQGVLK 325

Query: 403 ELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
            +   G   +V  YN LM       EV +A  LF  M     + +  S+SI I  +    
Sbjct: 326 TMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVK 385

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
            I EA +  N++I     P+  +Y  L    C++G++  A  L +D   N    P    Y
Sbjct: 386 RIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTN-GYLPDLCTY 444

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           ++ +   C+ G   K   +   M      PN V+ + +I  MCK G L  ARK+F+ L  
Sbjct: 445 SVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFV 504

Query: 582 RKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
             L  + +  +Y  I+    K+   D  L   +      K++  GC
Sbjct: 505 HGL--QPDVQIYTTIINGLCKEGLLDEALEAFR------KMEEDGC 542



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 144/320 (45%), Gaps = 31/320 (9%)

Query: 99  NQFQWGPQVVTELSKLRRVTPDLVAEVLKVE----NNPTLASKFFHWAGKQKGYKHNFAS 154
           ++++    ++ E++ L  + PD+V   L ++        L ++       + G + N  +
Sbjct: 280 SRWKEASAMLNEMTSLN-IMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVIT 338

Query: 155 YNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
           YN+L +  S                 Q  + E  ++ + M    CKPDVF+Y+ +I    
Sbjct: 339 YNSLMHGYSL----------------QMEVVEARKLFDVMITRGCKPDVFSYSILINGYC 382

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
             + +D   +++ EM    +  + ++Y TLI   C+ G++    ELF++M  NG L D  
Sbjct: 383 MVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLC 442

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
            Y VL+EG   +G +GKA  L + +  +  + +L +Y  +I  +C+    + A KLF   
Sbjct: 443 TYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSEL 502

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-----LKFSVAADLEKFFEFLVG 389
               L PD      ++    + G +D   +   +ME+      +FS    +  F +    
Sbjct: 503 FVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQH--- 559

Query: 390 KEERIMMALDVFEELKGKGY 409
           K+E    A+ +  E++ KG+
Sbjct: 560 KDES--RAVQLIGEMRDKGF 577



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 123/262 (46%), Gaps = 5/262 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + E   +L+ M     +P+V  Y +++   + +  +    ++++ M     + DV +
Sbjct: 314 EGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFS 373

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G C   R+    +LF EM   G+  +   Y  LI      GK+ +A +L KD+ 
Sbjct: 374 YSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMH 433

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +GY  DL  Y+ ++ G C+     KA++LF       L P+      L+    + G ++
Sbjct: 434 TNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLN 493

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNI 417
           +  KL +++      +  D++ +   + G  KE  +  AL+ F +++  G       YN+
Sbjct: 494 HARKLFSEL--FVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNV 551

Query: 418 LMGALLEIGEVKKALYLFGKMR 439
           ++   L+  +  +A+ L G+MR
Sbjct: 552 IIRGFLQHKDESRAVQLIGEMR 573



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 66/129 (51%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG + +   +   M+    KP++  YT +I  +    NL+   +++ E+    ++ DV  
Sbjct: 454 QGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQI 513

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I GLCK G +    E FR+M+E+G   +   Y V+I G +      +A  L+ ++ 
Sbjct: 514 YTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMR 573

Query: 301 DSGYRADLG 309
           D G+ AD G
Sbjct: 574 DKGFVADEG 582


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 188/410 (45%), Gaps = 9/410 (2%)

Query: 182 GRIAEMLEILEKMRRNL--CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           G  A   E  + M R     +PD  ++ A++     E   +    +   M       D  
Sbjct: 158 GCFAHAREAFDGMARAAGGVRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSA 217

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
               ++   C+ GR     +LFR M E G   +   Y   I+GL   G V +A  +L+++
Sbjct: 218 TCTVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEM 277

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           V  G + ++  + S+I GLC++   ++A++LF ++       P+  T   ++    + G+
Sbjct: 278 VGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGK 337

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIY 415
           +     LL +M  ++  +A +   +   + G  K      A ++  ++K +G+  ++  Y
Sbjct: 338 LARAEMLLGRM--VEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTY 395

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N ++G   + G++++A  +        L ++ ++++I I  H + G I  A +   ++ E
Sbjct: 396 NAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAE 455

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
            S  P +  Y  +    C+  +++ +  L   CL ++   PT+  Y   I   CR G+  
Sbjct: 456 KSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCL-SIGLVPTKQTYTSMIAGYCRLGKLT 514

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
             ++V   M Q GC P+ +   A+IS +CK   LEEAR +F  + ++ L+
Sbjct: 515 SALKVFERMVQHGCLPDSITYGALISSLCKESRLEEARALFETMLDKHLV 564



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 151/330 (45%), Gaps = 10/330 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QGR   + ++  +M      P++  Y+A I  L     +     V EEM    ++ +V  
Sbjct: 229 QGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYT 288

Query: 241 YVTLIMGLCKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           + +LI GLCK G + R   LF ++ K +    +   Y V+I G   EGK+ +A  LL  +
Sbjct: 289 HTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRM 348

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V+ G   +   Y ++I G C+   FD+A++L      +   P+  T N ++    + G++
Sbjct: 349 VEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKI 408

Query: 360 DNFFKLLAQMEKLKFSVAADLEKF-FEFLVG---KEERIMMALDVFEELKGKG-YSSVPI 414
              +K+L    ++  S    L+K  +  L+    K+  I  ALD+F+++  K  +  +  
Sbjct: 409 QEAYKVL----RMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHT 464

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y  ++    +  +++++  LF K   + L     +++  I  +   G +  A +   +++
Sbjct: 465 YTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMV 524

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
           +   +P    Y  L   LCK   ++ A  L
Sbjct: 525 QHGCLPDSITYGALISSLCKESRLEEARAL 554



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/393 (20%), Positives = 152/393 (38%), Gaps = 71/393 (18%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           V  D  ++  L++G C+ GR      L   M   G  +D A   V++     +G+     
Sbjct: 177 VRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVT 236

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           DL + + + G   ++  Y++ I GLC      +A+ + E  V   L P+  T   L+   
Sbjct: 237 DLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGL 296

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SV 412
            ++G M+  F+L  ++                                  +K   Y  +V
Sbjct: 297 CKIGWMERAFRLFLKL----------------------------------VKSSSYKPNV 322

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             Y +++G   + G++ +A  L G+M    L  N+ +++  I  H + G    A E  NK
Sbjct: 323 HTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNK 382

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           +     +P++  YN +  G CK G+I  A  ++R           +  Y + I   C+ G
Sbjct: 383 MKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQ-GLHLDKVTYTILITEHCKQG 441

Query: 533 EAEKIIEVLNEMTQEGCPPN--------EVIC---------------------------S 557
                +++  +M ++ C P+         + C                           +
Sbjct: 442 HITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYT 501

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           ++I+G C+ G L  A KVF  + +   L ++ T
Sbjct: 502 SMIAGYCRLGKLTSALKVFERMVQHGCLPDSIT 534



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 153/348 (43%), Gaps = 10/348 (2%)

Query: 250 KGGRVVRGHELFREMKENGI-LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS--GYRA 306
           + GR+    ++  E++ +G+ L+      VL  GL   G    A +    +  +  G R 
Sbjct: 120 EAGRLREAADMLLELRSHGLPLVVETANWVLRVGLRHPGCFAHAREAFDGMARAAGGVRP 179

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D   + +++ G CR  +F++A  L           D +T   ++      GR  N   L 
Sbjct: 180 DHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDLF 239

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYS-SVPIYNILMGALL 423
            +M ++      ++  +  ++ G  ER  +  A  V EE+ GKG   +V  +  L+  L 
Sbjct: 240 RRMSEM--GTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLC 297

Query: 424 EIGEVKKALYLFGKM-RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
           +IG +++A  LF K+ +  + + N  ++++ I  + + G +  A     +++E    P+ 
Sbjct: 298 KIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNT 357

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             Y  L  G CK G  D A  L+   +      P  + Y   I   C+ G+ ++  +VL 
Sbjct: 358 NTYTTLIHGHCKGGSFDRAFELMNK-MKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLR 416

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             T +G   ++V  + +I+  CK G +  A  +F  + E+    + +T
Sbjct: 417 MATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHT 464



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 20/228 (8%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           K   YK N  +Y  +   YC                   +G++A    +L +M      P
Sbjct: 314 KSSSYKPNVHTYTVMIGGYC------------------KEGKLARAEMLLGRMVEQGLAP 355

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +   YT +I       + D    +  +MK +    ++  Y  +I G CK G++   +++ 
Sbjct: 356 NTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVL 415

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           R     G+ +D+  Y +LI     +G +  A DL K + +     D+  Y +II   C+ 
Sbjct: 416 RMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQ 475

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
           +Q +++ +LF+  +   L P   T   ++     +G++ +  K+  +M
Sbjct: 476 RQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERM 523



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 128/313 (40%), Gaps = 8/313 (2%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           KP+V  YT MI     E  L     +   M +  +  +   Y TLI G CKGG   R  E
Sbjct: 319 KPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFE 378

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L  +MK  G L +   Y  +I G   +GK+ +A  +L+     G   D   Y  +I   C
Sbjct: 379 LMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHC 438

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +      A  LF+   +    PD  T   ++    +  +M+   +L  +   L   +   
Sbjct: 439 KQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKC--LSIGLVPT 496

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFG 436
            + +   + G  +  ++  AL VFE +   G     I Y  L+ +L +   +++A  LF 
Sbjct: 497 KQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEARALFE 556

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            M   +L    ++       +     I  A    +++ +  Q  +  A   L + L  +G
Sbjct: 557 TMLDKHLVPCDVTRVTLAYEYCRRDKITIAVSFLDRLDKRQQAHTADA---LVRKLSTVG 613

Query: 497 EIDAAMMLVRDCL 509
            +DAA + +++ L
Sbjct: 614 NLDAASLFLKNVL 626



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 123/321 (38%), Gaps = 41/321 (12%)

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIG-GLCRVKQFDKAYKLFE--VTVQDDLAPDF 343
           G++ +A D+L +L   G    +   N ++  GL     F  A + F+        + PD 
Sbjct: 122 GRLREAADMLLELRSHGLPLVVETANWVLRVGLRHPGCFAHAREAFDGMARAAGGVRPDH 181

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE 403
            +   L++ C   GR +    LLA M    F + +           ++ R     D+F  
Sbjct: 182 RSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDLFRR 241

Query: 404 LKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
           +   G     + Y+  +  L E G VK+A ++  +M G  L+                  
Sbjct: 242 MSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLK------------------ 283

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
                            P+V  +  L  GLCKIG ++ A  L    + + +  P    Y 
Sbjct: 284 -----------------PNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYT 326

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           + I   C+ G+  +   +L  M ++G  PN    + +I G CK G+ + A ++   ++  
Sbjct: 327 VMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLE 386

Query: 583 KLLTEANTIVYDEILIEHMKK 603
             L   N   Y+ I+    KK
Sbjct: 387 GFL--PNIYTYNAIIGGFCKK 405



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 62/121 (51%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG I   L++ ++M    C PD+  YT +I +   +R ++   +++++     +      
Sbjct: 440 QGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQT 499

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y ++I G C+ G++    ++F  M ++G L D   YG LI  L  E ++ +A  L + ++
Sbjct: 500 YTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEARALFETML 559

Query: 301 D 301
           D
Sbjct: 560 D 560


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 192/413 (46%), Gaps = 9/413 (2%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L +L +MR     P    +T++I     E N+   LR+ ++M       ++    +L+ G
Sbjct: 213 LSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKG 272

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            C  G +     L  E+ E+G++ ++  Y VLI+G    G + KA +   ++   G R+ 
Sbjct: 273 YCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSS 332

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +   NSI+ G  + + +  A+ +F   ++  LA  F T N LL    + G+M+    L  
Sbjct: 333 VYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVF-TFNTLLSWLCKEGKMNEACNLWD 391

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
           ++  +   ++ ++  +   ++G  +++ I  A  V++E+   G++ +   + ILM    +
Sbjct: 392 EV--IAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFK 449

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G+++ A  +F +M+  N+     +  I I+   ++G   E  +  NK +    VP+   
Sbjct: 450 KGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMP 509

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN +  G  K G I+ A  + R+ +  V   P+   Y   I   C+    +  +++LN+M
Sbjct: 510 YNTIIDGFIKEGNINLASNVYRE-MCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDM 568

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            ++G   +      +I G CK   ++ A ++   LR   L    N  +Y+ ++
Sbjct: 569 KRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGL--SPNRFIYNSMI 619



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 173/385 (44%), Gaps = 6/385 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ E   + +++      P+V +Y  +I     + N++A  +V++EM  +    + + 
Sbjct: 380 EGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVT 439

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  L+ G  K G +     +F  MK+  IL      G++I+GL   G+  +  DL    V
Sbjct: 440 FTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFV 499

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G+      YN+II G  +    + A  ++    +  + P   T   L+    +   +D
Sbjct: 500 SQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNID 559

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
              KLL  M++    +  D++ +   + G  K   +  A ++  EL+G G S +  IYN 
Sbjct: 560 LALKLLNDMKRKGLKM--DIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNS 617

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++     +  V++A+ L+ KM    +  +  +++  I   ++SG +L A + H +++   
Sbjct: 618 MITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKG 677

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
            +P   A+  L  GLC  G+ + A  ++ D  G     P+   Y   I    + G  ++ 
Sbjct: 678 ILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMI-PSVLIYNTLIAGHFKEGNLQEA 736

Query: 538 IEVLNEMTQEGCPPNEVICSAIISG 562
             + +EM   G  P+ +    +++G
Sbjct: 737 FRLHDEMLDRGLVPDNITYDILVNG 761



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/419 (20%), Positives = 183/419 (43%), Gaps = 9/419 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG +   L ++ ++  +   P+   Y+ +I       N++     + EMK   + + V +
Sbjct: 276 QGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYS 335

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             +++ G  K         +F +  E+G L +   +  L+  L  EGK+ +AC+L  +++
Sbjct: 336 LNSILEGYLKCQSWQNAFTMFNDALESG-LANVFTFNTLLSWLCKEGKMNEACNLWDEVI 394

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   ++  YN+II G CR    + A K+++  + +   P+  T   L+    + G ++
Sbjct: 395 AKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIE 454

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI---YNI 417
           N F +  +M+                 + K  R     D+F +   +G+  VP    YN 
Sbjct: 455 NAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGF--VPTCMPYNT 512

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++   ++ G +  A  ++ +M  + +  ++++++  I    +  +I  A +  N +    
Sbjct: 513 IIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKG 572

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
               + AY  L  G CK  ++ +A  L+ +  G     P  F Y   I         E+ 
Sbjct: 573 LKMDIKAYGTLIDGFCKRRDMKSAHELLNELRG-AGLSPNRFIYNSMITGFKNMNNVEEA 631

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE--ANTIVYD 594
           I++  +M  EG P +    +++I G+ K G L  A  + T +  + +L +  A+T++ +
Sbjct: 632 IDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLIN 690



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 119/267 (44%), Gaps = 28/267 (10%)

Query: 92  ITDAF-RKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVE-----NNPTLASKFFHWAGKQ 145
           I D F ++        V  E+ ++  +TP  V     ++     NN  LA K  +   K+
Sbjct: 513 IIDGFIKEGNINLASNVYREMCEVG-ITPSTVTYTSLIDGFCKGNNIDLALKLLNDM-KR 570

Query: 146 KGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           KG K +  +Y  L   +C  R+                  +    E+L ++R     P+ 
Sbjct: 571 KGLKMDIKAYGTLIDGFCKRRD------------------MKSAHELLNELRGAGLSPNR 612

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           F Y +MI       N++  + ++++M  + +  D+  Y +LI GL K GR++   ++  E
Sbjct: 613 FIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTE 672

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M   GIL D   + VLI GL  +G+   A  +L+D+        + IYN++I G  +   
Sbjct: 673 MLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGN 732

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLL 350
             +A++L +  +   L PD  T + L+
Sbjct: 733 LQEAFRLHDEMLDRGLVPDNITYDILV 759


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 114/514 (22%), Positives = 226/514 (43%), Gaps = 62/514 (12%)

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKH----------------NFASYNALAYCLSRN 165
           V   L  E    +A  F +WA     ++H                N    N +  C+  N
Sbjct: 104 VVASLADEAGSMVALSFLYWAIGFPKFRHFMRLYIVSATALIGNKNLERANEVMQCMVMN 163

Query: 166 -----NLFRAADQVPELMDSQGRIAE---------------MLEILEKMRRNLCK----P 201
                 L  A + V E M +QG +                 ++EI E M   +C+    P
Sbjct: 164 FAENGKLKEAVNMVVE-MQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSP 222

Query: 202 DVFAYTAMI-------RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
           D  ++  M+       RVL AE+ L+A       M +     D      +I   C+ G V
Sbjct: 223 DCVSFKLMVVACCNMGRVLEAEKWLNA-------MVERGFIVDNATCTLIIDAFCQKGYV 275

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
            R    F +M E G+  +   +  LI GL  +G + +A +LL+++V  G++ ++  + ++
Sbjct: 276 NRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTL 335

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDD-LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           I GLC+    +KA++LF   V+ D   P+  T   ++    +  +++    LL++M++  
Sbjct: 336 IDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQ- 394

Query: 374 FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKK 430
             +  +   +   + G  K    + A ++ + +  +G+S ++  YN ++  L + G + +
Sbjct: 395 -GLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDE 453

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A  L  K+    L+ + ++++I +  H    D   +    NK++++   P + +Y  L  
Sbjct: 454 AYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLIS 513

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
             C+  ++  +  L  + + ++   PT+  Y   I   CR G     +++   M+  GC 
Sbjct: 514 XFCRQKQMKESERLFEEAV-SLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCA 572

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           P+ +   A+ISG+CK   L++AR ++  + ++ L
Sbjct: 573 PDSITYGALISGLCKESKLDDARNLYDAMMDKGL 606



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 168/413 (40%), Gaps = 36/413 (8%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G +  ++    KM      P+V  +TA+I  L  + ++     + EEM +   + +V  
Sbjct: 272 KGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYT 331

Query: 241 YVTLIMGLCKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           + TLI GLCK G   +   LF ++ + +G   +   Y  +I G   E K+ +A  LL  +
Sbjct: 332 HTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRM 391

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            + G   +   Y ++I G C+V  F +AY+L ++  ++  +P+  T N ++    + G +
Sbjct: 392 QEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSL 451

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
           D  ++LL      K SV                           L+  G +    Y ILM
Sbjct: 452 DEAYRLLN-----KVSVHG-------------------------LQADGVT----YTILM 477

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
                  +  ++L  F KM  +    +  S++  I        + E+     + + +  +
Sbjct: 478 SVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLI 537

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+   Y  +  G C+ G    A+ L +  + N    P    Y   I  +C+  + +    
Sbjct: 538 PTKKTYTSMICGYCRYGNTSLAVKLFQR-MSNHGCAPDSITYGALISGLCKESKLDDARN 596

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           + + M  +G  P EV    +    CK      A  V   L +R+ +   NT+V
Sbjct: 597 LYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLV 649



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 139/325 (42%), Gaps = 14/325 (4%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
           L+ +R +  KP+V  YTAMI     E  L+    +   M++  +  +   Y TLI G CK
Sbjct: 353 LKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCK 412

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
            G  VR +EL   M + G   +   Y  +I+GL  +G + +A  LL  +   G +AD   
Sbjct: 413 VGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVT 472

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           Y  ++   CR    +++   F   ++    PD  +   L+       +M    +L    E
Sbjct: 473 YTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFE--E 530

Query: 371 KLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGE 427
            +   +    + +   + G  +     +A+ +F+ +   G +   I Y  L+  L +  +
Sbjct: 531 AVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESK 590

Query: 428 VKKALYLFGKM--RGLN-LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
           +  A  L+  M  +GL+  EV  L+ +     + +  D   A    +++ +   + +V  
Sbjct: 591 LDDARNLYDAMMDKGLSPCEVTRLTLAYE---YCKKDDSSTAINVLDRLEKRQWIRTV-- 645

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCL 509
            N L + LC  G++D A +     L
Sbjct: 646 -NTLVRKLCSEGKLDMAALFFHKLL 669



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/367 (20%), Positives = 151/367 (41%), Gaps = 42/367 (11%)

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           ++M   + G++     +  EM+  G++        +++  VG G V  A ++  ++   G
Sbjct: 160 MVMNFAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRG 219

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
              D   +  ++   C + +  +A K     V+     D +T   ++    + G ++   
Sbjct: 220 VSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVV 279

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
               +M  ++  +A ++  F   + G  K+  I  A ++ EE+  +G+  +V  +  L+ 
Sbjct: 280 GYFWKM--VEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLID 337

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L + G  +KA  LF K+      V S  +                             P
Sbjct: 338 GLCKKGWTEKAFRLFLKL------VRSDGYK----------------------------P 363

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +V  Y  +  G CK  +++ A ML+   +      P    Y   I   C+ G   +  E+
Sbjct: 364 NVHTYTAMINGYCKEDKLNRAEMLLSR-MQEQGLVPNTNTYTTLIDGHCKVGNFVRAYEL 422

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           ++ M +EG  PN    +AII G+CK G+L+EA ++   +    L  +A+ + Y  ++  H
Sbjct: 423 MDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGL--QADGVTYTILMSVH 480

Query: 601 MKKKTAD 607
            ++   +
Sbjct: 481 CRQADTN 487



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 108/278 (38%), Gaps = 20/278 (7%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKM 194
           A + F    +  GYK N  +Y A+     + +    A+ +   M  QG +          
Sbjct: 348 AFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLV---------- 397

Query: 195 RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
                 P+   YT +I       N      + + M K+    ++  Y  +I GLCK G +
Sbjct: 398 ------PNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSL 451

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
              + L  ++  +G+  D   Y +L+     +    ++      ++  G+  D+  Y ++
Sbjct: 452 DEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTL 511

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
           I   CR KQ  ++ +LFE  V   L P   T   ++      G      KL  +M     
Sbjct: 512 ISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMS--NH 569

Query: 375 SVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS 410
             A D   +   + G  KE ++  A ++++ +  KG S
Sbjct: 570 GCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLS 607


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 170/392 (43%), Gaps = 35/392 (8%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L   ++M RN C P+V  Y  MI      +  D        M    +E +++ +  +I G
Sbjct: 3   LRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIING 62

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC+ GR+    E+  EM   G + D   Y  L+ G   EG   +A  L  ++V +G   +
Sbjct: 63  LCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPN 122

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  Y S+I  +C+    ++A + F+      L P+  T   ++   A+ G +D  +++L 
Sbjct: 123 VVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLN 182

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE 427
           +M +  F                                    S+  YN L+     +G 
Sbjct: 183 EMTRSGF----------------------------------IPSIVTYNALINGHCVLGR 208

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           +++A+ L   M G  +  + +S+S  I     + ++  A +   ++I  S +P    Y+ 
Sbjct: 209 MEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSS 268

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L +GLC+   +  A  + ++ L  +   P EF Y   I   C+ G+  K + + +EM Q+
Sbjct: 269 LIQGLCEQRRLTEACDMFQEML-TIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQK 327

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           G  P+ V  + +I+G+ K    +EAR++   L
Sbjct: 328 GFLPDAVTYNVLINGLNKQARSKEARRLLLKL 359



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/487 (23%), Positives = 212/487 (43%), Gaps = 41/487 (8%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           KG + N  ++N +   L R+                GR+ E  E+L +M R    PD   
Sbjct: 47  KGLEPNLITFNMIINGLCRD----------------GRLKETSEVLVEMSRKGYVPDEVT 90

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  ++     E N    L +  EM ++ +  +V+ Y +LI  +CK G + R  E F +M 
Sbjct: 91  YNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMH 150

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
             G+  +   Y  +I G   +G + +A  +L ++  SG+   +  YN++I G C + + +
Sbjct: 151 VRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRME 210

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +A  L +  V   + PD  + + ++   A    +D  F++  ++E +  SV  D   +  
Sbjct: 211 EAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQM--KVEMIGKSVLPDAVTYSS 268

Query: 386 FLVG--KEERIMMALDVFEE-LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            + G  ++ R+  A D+F+E L  K       Y  L+ A  + G++ KAL+L  +M    
Sbjct: 269 LIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKG 328

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
              +++++++ I    +     EA     K+     +PS   YN L +  C I E  +A+
Sbjct: 329 FLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNI-EFKSAV 387

Query: 503 MLVR---------------DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
            LV+               + + N    P E  Y + I   CR G   K  ++  EM   
Sbjct: 388 ALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHV 447

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE-HMKKKTA 606
              P+ V   A++  +   G   E  +V  ++     LT+A      ++L+E + K+   
Sbjct: 448 DFVPHTVTVLALVKALFTEGMDGELNEVIGDILRSCKLTDAE---LSKVLVEINQKEGNM 504

Query: 607 DLVLSGL 613
           D+V + L
Sbjct: 505 DMVFNLL 511



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 174/413 (42%), Gaps = 23/413 (5%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  E    L  M     +P++  +  +I  L  +  L     V  EM +     D + Y 
Sbjct: 33  RTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYN 92

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TL+ G CK G   +   L  EM  NG+  +   Y  LI  +   G + +A +    +   
Sbjct: 93  TLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVR 152

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   +   Y +II G  +    D+AY++     +    P   T N L+     +GRM+  
Sbjct: 153 GLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEA 212

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IYNI 417
             LL  M  +   V  D+  +   + G  + + +  A  +  E+ GK  S +P    Y+ 
Sbjct: 213 IGLLQDM--VGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGK--SVLPDAVTYSS 268

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L E   + +A  +F +M  + L  +  +++  I  + + GD+ +A   H+++I+  
Sbjct: 269 LIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKG 328

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLV-----RDCLGNVASGPT--------EFKYALT 524
            +P    YN L  GL K      A  L+      D + +  +  T        EFK A+ 
Sbjct: 329 FLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVA 388

Query: 525 ILH-VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           ++   C  G  ++  +V   M  +   PNE I + II G C+ G + +A K++
Sbjct: 389 LVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLY 441



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 135/328 (41%), Gaps = 35/328 (10%)

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
           G   F+EM+ NG L +   Y  +I+G     +  +A   L+ +   G   +L  +N II 
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIIN 61

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           GLCR  +  +  ++     +    PD  T N L+    + G       L A+M +   S 
Sbjct: 62  GLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLS- 120

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFG 436
                                             +V  Y  L+ ++ + G + +A+  F 
Sbjct: 121 ---------------------------------PNVVTYTSLINSMCKAGNLNRAMEFFD 147

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M    L  N  +++  I    + G + EA    N++     +PS+  YN L  G C +G
Sbjct: 148 QMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLG 207

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            ++ A+ L++D +G     P    Y+  I    R+ E ++  ++  EM  +   P+ V  
Sbjct: 208 RMEEAIGLLQDMVGK-GVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTY 266

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKL 584
           S++I G+C+   L EA  +F  +   KL
Sbjct: 267 SSLIQGLCEQRRLTEACDMFQEMLTIKL 294



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 15/243 (6%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q R+ E  ++ ++M      PD F YT +I     E +L+  L + +EM +     D + 
Sbjct: 276 QRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVT 335

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE---------------GLVG 285
           Y  LI GL K  R      L  ++  +  +     Y  LIE               G   
Sbjct: 336 YNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCM 395

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           +G + +A  + + +++  ++ +  IYN II G CR+    KAYKL++  V  D  P   T
Sbjct: 396 KGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVT 455

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELK 405
           V  L+      G      +++  + +      A+L K    +  KE  + M  ++  E+ 
Sbjct: 456 VLALVKALFTEGMDGELNEVIGDILRSCKLTDAELSKVLVEINQKEGNMDMVFNLLTEMA 515

Query: 406 GKG 408
             G
Sbjct: 516 KDG 518


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 192/405 (47%), Gaps = 18/405 (4%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           + G + +  +YN++      N + R+ D            +  L++L KM     K DVF
Sbjct: 186 ENGCQPDVVTYNSIV-----NGICRSGDT-----------SLALDLLRKMEERNVKADVF 229

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y+ +I  L  +  +DA + +++EM+   +++ V+ Y +L+ GLCK G+   G  L ++M
Sbjct: 230 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM 289

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
               I+ +   + VL++  V EGK+ +A +L K+++  G   ++  YN+++ G C   + 
Sbjct: 290 VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 349

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +A  + ++ V++  +PD  T   L+     + R+D+  K+   + K      A      
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSIL 409

Query: 385 EFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
                +  +I +A ++F+E+   G    V  Y IL+  L + G+++KAL +F  ++   +
Sbjct: 410 VQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 469

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
           ++  + ++  I+   + G + +A      +      P+V  Y  +  GLCK G +  A +
Sbjct: 470 DLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 529

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
           L+R  +    + P +  Y   I    R G+     +++ EM   G
Sbjct: 530 LLRK-MEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 189/406 (46%), Gaps = 8/406 (1%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PD   +  +I+ L  E  +   + + + M ++  + DV+ Y +++ G+C+ G      +
Sbjct: 155 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALD 214

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L R+M+E  +  D   Y  +I+ L  +G +  A  L K++   G ++ +  YNS++ GLC
Sbjct: 215 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 274

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +  +++    L +  V  ++ P+  T N LL    + G++    +L  +M  +   ++ +
Sbjct: 275 KAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEM--ITRGISPN 332

Query: 380 LEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFG 436
           +  +   + G   + R+  A ++ + + + K    +  +  L+     +  V   + +F 
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 392

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            +    L  N++++SI +Q   +SG I  A E   +++    +P V  Y  L  GLC  G
Sbjct: 393 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           +++ A+ +  D L           Y   I  +C+ G+ E    +   +  +G  PN +  
Sbjct: 453 KLEKALEIFED-LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 511

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
           + +ISG+CK G+L EA  +   + E       N   Y+ ++  H++
Sbjct: 512 TVMISGLCKKGSLSEANILLRKMEEDG--NAPNDCTYNTLIRAHLR 555



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/436 (22%), Positives = 203/436 (46%), Gaps = 12/436 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G+++E + ++++M  N C+PDV  Y +++  +    +    L +  +M++  V+ADV  
Sbjct: 171 EGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFT 230

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I  LC+ G +     LF+EM+  GI      Y  L+ GL   GK      LLKD+V
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 290

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 ++  +N ++    +  +  +A +L++  +   ++P+  T N L+       R+ 
Sbjct: 291 SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLS 350

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
               +L  M + K S   D+  F   + G    +R+   + VF  +  +G  ++   Y+I
Sbjct: 351 EANNMLDLMVRNKCS--PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSI 408

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+    + G++K A  LF +M    +  + +++ I +    ++G + +A E    + +  
Sbjct: 409 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYALTILHVCRSGEAE 535
               +  Y  + +G+CK G+++ A  L     C G     P    Y + I  +C+ G   
Sbjct: 469 MDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKG---VKPNVMTYTVMISGLCKKGSLS 525

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI--VY 593
           +   +L +M ++G  PN+   + +I    + G L  + K+   ++      +A++I  V 
Sbjct: 526 EANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVI 585

Query: 594 DEILIEHMKKKTADLV 609
           D +L   + K   D++
Sbjct: 586 DMLLSGELDKSFLDML 601



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 196/422 (46%), Gaps = 11/422 (2%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + + + ++M R+   P +  ++     +A  +  +  L   ++++ + +  ++     +I
Sbjct: 71  DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 130

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              C+  +    + +  ++ + G   D   +  LI+GL  EGKV +A  L+  +V++G +
Sbjct: 131 NCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQ 190

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  YNSI+ G+CR      A  L     + ++  D  T + ++      G +D    L
Sbjct: 191 PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 250

Query: 366 LAQMEK--LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALL 423
             +ME   +K SV          L    +    AL + + +  +   +V  +N+L+   +
Sbjct: 251 FKEMETKGIKSSVVT-YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 309

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G++++A  L+ +M    +  N ++++  +  +     + EA    + ++     P + 
Sbjct: 310 KEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIV 369

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDC--LGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
            +  L KG C +  +D  M + R+    G VA+  T   Y++ +   C+SG+ +   E+ 
Sbjct: 370 TFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVT---YSILVQGFCQSGKIKLAEELF 426

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
            EM   G  P+ +    ++ G+C +G LE+A ++F +L++ K+  +   ++Y  I IE M
Sbjct: 427 QEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM--DLGIVMYTTI-IEGM 483

Query: 602 KK 603
            K
Sbjct: 484 CK 485



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 72/354 (20%), Positives = 142/354 (40%), Gaps = 25/354 (7%)

Query: 229 MKKDLVEADVMAYVTLIMGLCKG--GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
           +K   +  D++  ++     C+     +  G+  FRE   +GI+               +
Sbjct: 22  LKTGSLRTDLLCTISSFFSSCERDFSSISNGNVCFRERLRSGIV---------------D 66

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
            K   A  L ++++ S     L  ++     + R KQF+      +    + +A +  T+
Sbjct: 67  IKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTL 126

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL 404
           N ++ C     +    + +L ++ KL +    D   F   + G   E ++  A+ + + +
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYE--PDTTTFNTLIKGLFLEGKVSEAVVLVDRM 184

Query: 405 KGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
              G    V  YN ++  +   G+   AL L  KM   N++ +  ++S  I      G I
Sbjct: 185 VENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCI 244

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN-VASGPTEFKYA 522
             A     ++       SV  YN L +GLCK G+ +   +L++D +   +      F   
Sbjct: 245 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 304

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           L +    + G+ ++  E+  EM   G  PN +  + ++ G C    L EA  + 
Sbjct: 305 LDVF--VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 113/472 (23%), Positives = 192/472 (40%), Gaps = 57/472 (12%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G + + A YN L   L+  +  +  + V   M  +G                 +PDV   
Sbjct: 155 GVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRG----------------IQPDVVTL 198

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +I+ L     +   + + EEM    V  D   + TL+ G  + G +     +  +M E
Sbjct: 199 NTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMME 258

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G    R    VLI G    G+V  A   ++  +  G+  D   YN+ +  LC+      
Sbjct: 259 TGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSH 318

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A K+ ++ +Q+   PD  T N ++ C ++ G +D    ++ QM  +      D   F   
Sbjct: 319 ALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQM--VDRGCLPDTTTFNTL 376

Query: 387 LVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           +V    + R+  ALD+  EL  KG S  V  +NIL+ AL ++G+    + LF +M+    
Sbjct: 377 IVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGC 436

Query: 444 EVNSLSFSIAIQCHVESGDILEACE---------------CHNKII----------EMSQ 478
             + ++++I I      G ++ A +                +N II          E  +
Sbjct: 437 APDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEE 496

Query: 479 V----------PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
           V           S   +N L  GLCK   ID A  L+   +      P+   Y   + H 
Sbjct: 497 VFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKE-GLQPSNITYNSILTHY 555

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           C+ G+ +K  ++L  MT  G   + V    +I+G+CK G  + A K+   +R
Sbjct: 556 CKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMR 607



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 171/389 (43%), Gaps = 6/389 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + L  ++K   +  +PD   Y   +  L    ++   L+V + M ++  + DV  Y
Sbjct: 279 GRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTY 338

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T+I  L K G +     +  +M + G L D   +  LI  L  + ++ +A DL ++L  
Sbjct: 339 NTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTV 398

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  +N +I  LC+V       +LFE       APD  T N L+     MG++ N
Sbjct: 399 KGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVN 458

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
              LL +ME      +          + K+ RI  A +VF+++   G S S   +N L+ 
Sbjct: 459 ALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLID 518

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L +   +  A  L  +M    L+ ++++++  +  + + GD+ +A +    +       
Sbjct: 519 GLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEI 578

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKII 538
            V  Y  L  GLCK G    A+ L+R   G    G  PT   Y   I  + R       +
Sbjct: 579 DVVTYGTLINGLCKAGRTQVALKLLR---GMRIKGIRPTPKAYNPVIQSLFRRNNLRDAL 635

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            +  EMT+ G PP+ +    +  G+C+ G
Sbjct: 636 SLFREMTEVGEPPDALTYKIVFRGLCRGG 664



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 158/353 (44%), Gaps = 17/353 (4%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+G+  +  +YN +  CLS+N          EL +++G + +M++         C PD  
Sbjct: 328 QEGHDPDVFTYNTVINCLSKNG---------ELDEAKGIVNQMVD-------RGCLPDTT 371

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            +  +I  L ++  L+  L +  E+    +  DV  +  LI  LCK G    G  LF EM
Sbjct: 372 TFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEM 431

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K +G   D   Y +LI+ L   GK+  A DLLK++  +G       YN+II  LC+  + 
Sbjct: 432 KSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRI 491

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           ++A ++F+      ++    T N L+    +  R+D+  +L+ QM K     +       
Sbjct: 492 EEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSI 551

Query: 385 EFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
                K+  +  A D+ E +   G+   V  Y  L+  L + G  + AL L   MR   +
Sbjct: 552 LTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGI 611

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
                +++  IQ      ++ +A     ++ E+ + P    Y  + +GLC+ G
Sbjct: 612 RPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGG 664



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 104/253 (41%), Gaps = 23/253 (9%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           +  G   +  +YN +   L +      A++V + MD+ G                   RI
Sbjct: 467 ESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRI 526

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            +  E++E+M +   +P    Y +++     + +L     + E M  +  E DV+ Y TL
Sbjct: 527 DDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTL 586

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLCK GR     +L R M+  GI      Y  +I+ L     +  A  L +++ + G 
Sbjct: 587 INGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGE 646

Query: 305 RADLGIYNSIIGGLCRVKQ-FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
             D   Y  +  GLCR      +A+      V     P+FS+   L      +G MD++ 
Sbjct: 647 PPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLG-MDDYL 705

Query: 364 KLLAQM--EKLKF 374
               ++  EK KF
Sbjct: 706 ISAIELIIEKAKF 718


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 106/451 (23%), Positives = 198/451 (43%), Gaps = 12/451 (2%)

Query: 181 QGRIAEMLE-ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +G   ++LE +  +M     +PDV     +I+ L     +   + + EEM    V  D  
Sbjct: 174 EGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDET 233

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            + TL+ G  + G +     +  +M E G         VLI G    G+V  A   ++  
Sbjct: 234 TFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQE 293

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G+  D   YN+ + GLC+      A K+ ++ +Q+   PD  T N ++ C ++ G +
Sbjct: 294 IADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGEL 353

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           D    ++ QM  +      D   F   +V    + R+  ALD+  EL  KG S  V  +N
Sbjct: 354 DEAKGIVNQM--VDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFN 411

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+ AL ++G+    + LF +M+      + ++++I I      G +  A +  N++   
Sbjct: 412 ILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESN 471

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
               S   YN +   LCK   I+ A   V D +       +   +   I  +C++   + 
Sbjct: 472 GCPRSTVTYNTIIDALCKKMRIEEAEE-VFDQMDAQGISRSAVTFNTLIDGLCKAKRIDD 530

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
             E++ +M +EG  PN +  ++I++  CK G +++A  +   +       E + + Y  +
Sbjct: 531 ATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGF--EIDVVTYGTL 588

Query: 597 ---LIEHMKKKTADLVLSGLKFFGLESKLKA 624
              L +  + + A  +L G++  G+    KA
Sbjct: 589 INGLCKAGRTQVALKLLRGMRIKGIRPTPKA 619



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 170/389 (43%), Gaps = 6/389 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + L  +++   +  +PD   Y   +  L    ++   L+V + M ++  + DV  Y
Sbjct: 281 GRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTY 340

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T+I  L K G +     +  +M + G L D   +  LI  L  + ++ +A DL ++L  
Sbjct: 341 NTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTV 400

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  +N +I  LC+V       +LFE        PD  T N L+     MG++ N
Sbjct: 401 KGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGN 460

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
              LL +ME      +          + K+ RI  A +VF+++  +G S S   +N L+ 
Sbjct: 461 ALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLID 520

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L +   +  A  L  +M    L+ N+++++  +  + + G+I +A +    +       
Sbjct: 521 GLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEI 580

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKII 538
            V  Y  L  GLCK G    A+ L+R   G    G  PT   Y   I  + R       +
Sbjct: 581 DVVTYGTLINGLCKAGRTQVALKLLR---GMRIKGIRPTPKAYNPVIQSLFRRNNLRDAL 637

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            +  EMT+ G PP+ +    +   +C+ G
Sbjct: 638 NLFREMTEVGEPPDALTYKIVFRSLCRGG 666



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 162/355 (45%), Gaps = 21/355 (5%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+G+  +  +YN +  CLS+N          EL +++G + +M++         C PD  
Sbjct: 330 QEGHDPDVFTYNTVINCLSKNG---------ELDEAKGIVNQMVD-------RGCLPDTT 373

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            +  +I  L+++  L+  L +  E+    +  DV  +  LI  LCK G    G  LF EM
Sbjct: 374 TFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEM 433

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K +G   D   Y +LI+ L   GK+G A DLL ++  +G       YN+II  LC+  + 
Sbjct: 434 KSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRI 493

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           ++A ++F+      ++    T N L+    +  R+D+  +L+ QM  +K  +  +   + 
Sbjct: 494 EEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQM--VKEGLQPNNITYN 551

Query: 385 EFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
             L    K+  I  A D+ E +   G+   V  Y  L+  L + G  + AL L   MR  
Sbjct: 552 SILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIK 611

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            +     +++  IQ      ++ +A     ++ E+ + P    Y  + + LC+ G
Sbjct: 612 GIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGG 666



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 24/165 (14%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQG-------------------R 183
           ++G + N  +YN++   YC  + N+ +AAD + E M + G                   R
Sbjct: 540 KEGLQPNNITYNSILTHYC-KQGNIKKAAD-ILETMTANGFEIDVVTYGTLINGLCKAGR 597

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
               L++L  MR    +P   AY  +I+ L    NL   L ++ EM +     D + Y  
Sbjct: 598 TQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKI 657

Query: 244 LIMGLCKGGRVVR-GHELFREMKENGILIDRAIYGVLIEGLVGEG 287
           +   LC+GG  ++   +   EM   G + + + + +L EGL+  G
Sbjct: 658 VFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLG 702


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 111/461 (24%), Positives = 209/461 (45%), Gaps = 17/461 (3%)

Query: 173 QVPELMDSQGRI---AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
           Q  +++DS  ++   +  + +  ++     +PD+F    +I        +     V  ++
Sbjct: 309 QFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKI 368

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
            K       +   TLI GLC  G+V +      ++   G  +++  Y  LI G+   G  
Sbjct: 369 LKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDT 428

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
             A  LL+ +     + ++ +Y++II  LC+ +   +AY LF       ++ D  T + L
Sbjct: 429 RGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTL 488

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFE-ELKG 406
           +     +G++     LL +M  LK ++  D+  +   +  +GKE ++  A  V    LK 
Sbjct: 489 IYGFCIVGKLKEAIGLLNEMV-LK-TINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKA 546

Query: 407 KGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
                V  YN LM   L + EVKKA ++F  M  + +  +  +++I I    +S  + EA
Sbjct: 547 CVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEA 606

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
                ++ + + VP    Y+ L  GLCK G I     L+ D + +         Y   I 
Sbjct: 607 LNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLI-DEMRDRGQPADVITYNSLID 665

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
            +C++G  +K I + N+M  +G  PN    + ++ G+CK G L++A++VF +L  +    
Sbjct: 666 GLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGY-- 723

Query: 587 EANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
             +  +Y+ ++  H K+   +  L+ L      SK++  GC
Sbjct: 724 HLDVYIYNVMIYGHCKQGLLEEALTML------SKMEENGC 758



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 192/450 (42%), Gaps = 57/450 (12%)

Query: 139 FHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNL 198
           FH     +G++ N  SY  L             + V ++ D++G I    ++L K+   L
Sbjct: 399 FHDKLLAQGFQLNQVSYATLI------------NGVCKIGDTRGAI----KLLRKIDGRL 442

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
            KP+V  Y+ +I  L   + +     ++ EM    + ADV+ Y TLI G C  G++    
Sbjct: 443 TKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAI 502

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L  EM    I  D   Y +L++ L  EGKV +A  +L  ++ +  + D+  YN+++ G 
Sbjct: 503 GLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGY 562

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
             V +  KA  +F       + PD  T   L+    +   +D    L  +M +   ++  
Sbjct: 563 LLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQK--NMVP 620

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLF 435
           D   +   + G  K  RI    D+ +E++ +G  + V  YN L+  L + G + KA+ LF
Sbjct: 621 DTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALF 680

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            KM+   +  N+ +F+I +    + G + +A E    ++       V  YN +  G CK 
Sbjct: 681 NKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQ 740

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G ++ A+ +                                    L++M + GC PN V 
Sbjct: 741 GLLEEALTM------------------------------------LSKMEENGCIPNAVT 764

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLL 585
              II+ + K    ++A K+   +  R LL
Sbjct: 765 FDIIINALFKKDENDKAEKLLRQMIARGLL 794



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/429 (24%), Positives = 188/429 (43%), Gaps = 8/429 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+I     +L K+ +    P       +I+ L  +  +   L   +++     + + ++Y
Sbjct: 356 GQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSY 415

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G+CK G      +L R++       +  +Y  +I+ L     V +A  L  ++  
Sbjct: 416 ATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTV 475

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G  AD+  Y+++I G C V +  +A  L    V   + PD  T   L+    + G++  
Sbjct: 476 KGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKE 535

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYNIL 418
              +LA M  LK  V  D+  +   + G      +  A  VF  +   G +  V  Y IL
Sbjct: 536 AKSVLAVM--LKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTIL 593

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    +   V +AL LF +M   N+  +++++S  +    +SG I    +  +++ +  Q
Sbjct: 594 INGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQ 653

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
              V  YN L  GLCK G +D A+ L    + +    P  F + + +  +C+ G  +   
Sbjct: 654 PADVITYNSLIDGLCKNGHLDKAIALFNK-MKDQGIRPNTFTFTILLDGLCKGGRLKDAQ 712

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           EV  ++  +G   +  I + +I G CK G LEEA  + + + E   +   N + +D I+ 
Sbjct: 713 EVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCI--PNAVTFDIIIN 770

Query: 599 EHMKKKTAD 607
              KK   D
Sbjct: 771 ALFKKDEND 779



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 187/435 (42%), Gaps = 19/435 (4%)

Query: 139 FHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNL 198
           FH     +G++ N  SY  L   + R    RAA                ++ L K+   L
Sbjct: 85  FHDKLLAQGFQLNQVSYATLINGVCRIGDTRAA----------------IKFLRKIDGRL 128

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
            KP+V  Y  +I  L   + +     ++ EM    + A+V+ Y TLI G C  G++    
Sbjct: 129 AKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEAL 188

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L   M    I  +   Y +L++ L  EGKV +A  +L  ++ +  ++++  Y++++ G 
Sbjct: 189 GLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGY 248

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
             V +  KA  +F       + PD  + N ++    ++ R+D    L  +M   +F    
Sbjct: 249 FLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPII 308

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
              K  +    K +    A+ +   L+ KG    +   NIL+     +G++     +  K
Sbjct: 309 QFNKILDSF-AKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAK 367

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           +       ++++ +  I+     G + +A   H+K++      +  +Y  L  G+CKIG+
Sbjct: 368 ILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGD 427

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
              A+ L+R   G +     E  Y+  I  +C+     +   + +EMT +G   + V  S
Sbjct: 428 TRGAIKLLRKIDGRLTKPNVEM-YSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYS 486

Query: 558 AIISGMCKHGTLEEA 572
            +I G C  G L+EA
Sbjct: 487 TLIYGFCIVGKLKEA 501



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 96/209 (45%), Gaps = 16/209 (7%)

Query: 396 MALDVFEELKGKGY--SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
           ++L V  ++  +GY   +V +  ++ G  L+ G+VK+AL+   K+     ++N +S++  
Sbjct: 46  VSLSVLTKILKRGYPPDTVTLNTLIKGLCLK-GQVKEALHFHDKLLAQGFQLNQVSYATL 104

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDC 508
           I      GD   A +   KI      P+V  YN +   LCK   +  A      M V+  
Sbjct: 105 INGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGI 164

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
             NV +      Y+  I   C  G+ ++ + +LN M  +   PN    + ++  +CK G 
Sbjct: 165 SANVVT------YSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGK 218

Query: 569 LEEARKVFTNLRERKLLTEANTIVYDEIL 597
           ++EA+ V   +   K   ++N I Y  ++
Sbjct: 219 VKEAKSVLAVM--LKACVKSNVITYSTLM 245



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 11/171 (6%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           +V +YN ++ AL +   V +A  LF +M    +  N +++S  I      G + EA    
Sbjct: 132 NVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLL 191

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA----MMLVRDCL-GNVASGPTEFKYALTI 525
           N ++  +  P+V  YN L   LCK G++  A     ++++ C+  NV +  T       +
Sbjct: 192 NVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLV 251

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
                  E +K   V N M+  G  P+    + +I+G CK   +++A  +F
Sbjct: 252 Y------EVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLF 296


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 176/394 (44%), Gaps = 6/394 (1%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           + +K+ +  C+ D FAY  +IR       LD+ + ++ EMK    E D   Y  L+  L 
Sbjct: 87  VYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALG 146

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K GRV      F  M E G+  +   Y +L++     G++  A  L  ++   G++  + 
Sbjct: 147 KAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVV 206

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            YN ++  LC   +   A KLF     D  +PD  T + L+    + GR++   K+  +M
Sbjct: 207 TYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREM 266

Query: 370 EKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIG 426
             +   VA DL  +   L  + K   +     + +E+  KG+      +N +M AL +  
Sbjct: 267 --VDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKAN 324

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
           +   A  +F +M     + + +S++I I  +   GD  +A +   +++E   +P    YN
Sbjct: 325 KPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYN 384

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L   L   G++D A  ++ + +      P    Y   +  + + GE ++   +  +M  
Sbjct: 385 SLIHWLATDGQVDEAFAVLEE-METAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKD 443

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           +G  P+ +  +  I G+     L+EA  +F +++
Sbjct: 444 KGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMK 477



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 172/398 (43%), Gaps = 8/398 (2%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C P V A+T +I +L      +    V++++ +   + D  AY  LI    + G++    
Sbjct: 61  CSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAM 120

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           E+FREMK  G   D   YG L+  L   G+V +A      +++ G   ++  YN ++   
Sbjct: 121 EMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAF 180

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
            +V Q D A  LF    +    P   T N LL      GR+    KL  +M     S  +
Sbjct: 181 RKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDS 240

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
                    +GK  R+  A  VF E+  +G +  +  YN L+  L + G + +   L  +
Sbjct: 241 YTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKE 300

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M       ++ SF+  +    ++     A E   +++E    P + +YN L     + G+
Sbjct: 301 MSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGD 360

Query: 498 IDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
              A  ++ +    V +G  P    Y   I  +   G+ ++   VL EM   GC P+ V 
Sbjct: 361 AAQARQMLEEM---VEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVT 417

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
            + ++  + K G  + A ++F  ++++ +  E +T+ Y
Sbjct: 418 YNRLMDMLGKRGENQRAARLFQQMKDKGV--EPDTLSY 453



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 136/282 (48%), Gaps = 4/282 (1%)

Query: 177 LMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD+  ++ ++   L +  +M+R   +P V  Y  ++  L +   + A  +++ +M  D 
Sbjct: 176 LMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDG 235

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
              D   Y TL+ GL K GRV   H++FREM + G+ +D   Y  L+  L   G + +  
Sbjct: 236 CSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVW 295

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            L+K++   G+  D   +N+I+  L +  + D A ++F   V+    PD  + N L+   
Sbjct: 296 KLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSY 355

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSV 412
           A  G      ++L +M +  F             +  + ++  A  V EE++  G    V
Sbjct: 356 ARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDV 415

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
             YN LM  L + GE ++A  LF +M+   +E ++LS+++ I
Sbjct: 416 VTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRI 457



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 151/390 (38%), Gaps = 37/390 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E     + M      P++  Y  ++        LD  L ++ EMK+   +  V+ Y
Sbjct: 149 GRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTY 208

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+  LC  GRV    +LF +M  +G   D   Y  L+ GL   G+V +A  + +++VD
Sbjct: 209 NILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVD 268

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   DL  YNS++  L +    D+ +KL +   +    PD  + N ++           
Sbjct: 269 RGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDA--------- 319

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
                                     +GK  +   A +VF  +   G     I YNIL+ 
Sbjct: 320 --------------------------LGKANKPDAAREVFARMVESGCKPDLISYNILID 353

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           +    G+  +A  +  +M        + +++  I      G + EA     ++      P
Sbjct: 354 SYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRP 413

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  YN L   L K GE   A  L +  + +    P    YA+ I  +      ++ + +
Sbjct: 414 DVVTYNRLMDMLGKRGENQRAARLFQQ-MKDKGVEPDTLSYAVRIDGLAFDDRLDEALVL 472

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
             +M   GCP ++ +   +I    + G  E
Sbjct: 473 FKDMKAVGCPVDKAMYRILIRAAHRAGDTE 502



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 20/178 (11%)

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQ-------- 173
           + + L   N P  A + F     + G K +  SYN L    +R      A Q        
Sbjct: 316 IMDALGKANKPDAAREVFARM-VESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEA 374

Query: 174 --VPEL---------MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
             +PE          + + G++ E   +LE+M    C+PDV  Y  ++ +L         
Sbjct: 375 GFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRA 434

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280
            R++++MK   VE D ++Y   I GL    R+     LF++MK  G  +D+A+Y +LI
Sbjct: 435 ARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILI 492



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 82/179 (45%), Gaps = 9/179 (5%)

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           +F+  I   V SG+   A   + K+++        AYN L +   + G++D+AM + R+ 
Sbjct: 67  AFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFRE- 125

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
           +    S P E+ Y   +  + ++G  ++     + M + G  PN    + ++    K G 
Sbjct: 126 MKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQ 185

Query: 569 LEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
           L+ A  +F  ++ R    + + + Y+ IL++ +   +A  V +  K F    K+   GC
Sbjct: 186 LDMALGLFAEMKRRGF--QPSVVTYN-ILLDAL--CSAGRVGAARKLF---HKMTGDGC 236


>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
          Length = 1184

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 196/424 (46%), Gaps = 31/424 (7%)

Query: 119 PDLVAEVL-KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA------ 171
           P L+  VL +  +   L  +FF WA KQ GY H++    ++   LS+   F A       
Sbjct: 97  PGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEE 156

Query: 172 --DQVPELMD------------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER 217
                PEL++            S   + + +E+L++M +   +PD + +  ++  L    
Sbjct: 157 MRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNG 216

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
           ++    +V+E+M++     ++  + +L+ G C+ G+++   E+  +MKE G+  D  ++ 
Sbjct: 217 SVKEASKVFEDMREKF-PPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFT 275

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV-KQFDKAYKLFEVTVQ 336
            L+ G    GK+  A DL+ D+   G+  ++  Y  +I  LCR  K+ D+A ++F    +
Sbjct: 276 NLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMER 335

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERI 394
                D  T   L+    + G +D  + +L  M K    V      + + +V   K+E+ 
Sbjct: 336 YGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKK--GVMPSQVTYMQIMVAHEKKEQF 393

Query: 395 MMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
              L++ E++K +G +  + IYN+++    ++GEVK+A+ L+ +M    L     +F I 
Sbjct: 394 EECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIM 453

Query: 454 IQCHVESGDILEACECHNKIIE--MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
           I      G ++EAC    +++   +   P       L   L +  +++ A   V  C+ N
Sbjct: 454 INGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKD-VWSCISN 512

Query: 512 VASG 515
             S 
Sbjct: 513 KTSS 516



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 144/320 (45%), Gaps = 41/320 (12%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA-AERNLDACLRVWEEMKKDLVEADVMA 240
           G++A+  +++  MR+   +P+V  YT +I+ L   E+ +D  +RV+ EM++   EAD++ 
Sbjct: 285 GKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVT 344

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK G + +G+ +  +M++ G++  +  Y  ++     + +  +  +L++ + 
Sbjct: 345 YTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMK 404

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   DL IYN +I   C++ +  +A +L+     + L+P   T   ++      G   
Sbjct: 405 RRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQG--- 461

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
                                    FL+        A + F+E+  +G  S P Y  L  
Sbjct: 462 -------------------------FLIE-------ACNHFKEMVSRGIFSAPQYGTLKS 489

Query: 421 ALLEIG-----EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
            L  +      E+ K ++     +  + E+N  +++I I      G + EAC     ++E
Sbjct: 490 LLNNLVRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEACSYCLDMME 549

Query: 476 MSQVPSVAAYNCLTKGLCKI 495
           M  +P    Y  L KGL K+
Sbjct: 550 MDLMPQPNTYAKLMKGLNKL 569


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 115/496 (23%), Positives = 215/496 (43%), Gaps = 43/496 (8%)

Query: 111 LSKLRRVT--PDLVAEVL-KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNL 167
           L KL  +T  P  V  VL +++ +P LA KFF W+  + G+KH+  SY  +A+ L    +
Sbjct: 98  LEKLFDLTLAPIWVPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARM 157

Query: 168 FRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWE 227
           +  A+ V + M       ++ ++L    RN+C P    + A+  VL     L+  ++ + 
Sbjct: 158 YYDANSVLKEMVLSKADCDVFDVLWS-TRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFS 216

Query: 228 EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
           +MK+  V     +   L+    K G+       F++M   G       Y ++I+ +  EG
Sbjct: 217 KMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEG 276

Query: 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
            V  A  L +++   G   D   YNS+I G  +V + D     FE        PD  T N
Sbjct: 277 DVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYN 336

Query: 348 PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK 407
            L+ C  + G++                                    + L+ + E+KG 
Sbjct: 337 ALINCFCKFGKLP-----------------------------------IGLEFYREMKGN 361

Query: 408 GYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           G   +V  Y+ L+ A  + G +++A+  +  MR + L  N  +++  I  + + G++ +A
Sbjct: 362 GLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDA 421

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
               N+++++    +V  Y  L  GLC    +  A  L    +      P    Y   I 
Sbjct: 422 FRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGK-MDTAGVIPNLASYNALIH 480

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
              ++   ++ +E+LNE+   G  P+ ++    I G+C    +E A+ V   ++E  +  
Sbjct: 481 GFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGI-- 538

Query: 587 EANTIVYDEILIEHMK 602
           +AN+++Y  ++  + K
Sbjct: 539 KANSLIYTTLMDAYFK 554



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/446 (23%), Positives = 201/446 (45%), Gaps = 40/446 (8%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + +   E+M+   C+PDV  Y A+I        L   L  + EMK + ++ +V++Y
Sbjct: 311 GRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSY 370

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+   CK G + +  + + +M+  G++ +   Y  LI+     G +  A  L  +++ 
Sbjct: 371 STLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQ 430

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++  Y ++I GLC  ++  +A +LF       + P+ ++ N L+    +   MD 
Sbjct: 431 VGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDR 490

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNIL 418
             +LL +++     +  DL  +  F+ G    E+I  A  V  E+K  G  ++  IY  L
Sbjct: 491 ALELLNELKGR--GIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTL 548

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII-EMS 477
           M A  + G   + L+L  +M+ L++EV  ++F + I    ++  + +A +  N+I  +  
Sbjct: 549 MDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFG 608

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMML--------------------------------- 504
              + A +  +  GLCK  +++AA  L                                 
Sbjct: 609 LQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEAL 668

Query: 505 -VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
            +RD +  +        Y   +  +    + +K    L EM  EG  P+EV+C +++   
Sbjct: 669 ALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKH 728

Query: 564 CKHGTLEEARKVFTNLRERKLLTEAN 589
            + G ++EA ++ + L + +LLT  N
Sbjct: 729 YELGCIDEAVELQSYLMKHQLLTSDN 754



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 175/400 (43%), Gaps = 5/400 (1%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           + M  +G +     + E+M+     PD   Y +MI        LD  +  +EEMK    E
Sbjct: 270 DCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCE 329

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            DV+ Y  LI   CK G++  G E +REMK NG+  +   Y  L++    EG + +A   
Sbjct: 330 PDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKF 389

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
             D+   G   +   Y S+I   C++     A++L    +Q  +  +  T   L+    +
Sbjct: 390 YVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCD 449

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SV 412
             RM    +L  +M+     V  +L  +   + G  K + +  AL++  ELKG+G    +
Sbjct: 450 AERMKEAEELFGKMDTA--GVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDL 507

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
            +Y   +  L  + +++ A  +  +M+   ++ NSL ++  +  + +SG+  E     ++
Sbjct: 508 LLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDE 567

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           + E+    +V  +  L  GLCK   +  A+        +         +   I  +C+  
Sbjct: 568 MKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDN 627

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           + E    +  +M Q+G  P+    ++++ G  K G + EA
Sbjct: 628 QVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEA 667



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 4/199 (2%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD+    G   E L +L++M+    +  V  +  +I  L   + +   +  +  +  D 
Sbjct: 548 LMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDF 607

Query: 234 -VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            ++A+   +  +I GLCK  +V     LF +M + G++ DR  Y  L++G   +G V +A
Sbjct: 608 GLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEA 667

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
             L   + + G + DL  Y S++ GL    Q  KA    E  + + + PD      +L  
Sbjct: 668 LALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKK 727

Query: 353 CAEMGRMDNFFKLLAQMEK 371
             E+G +D   +L + + K
Sbjct: 728 HYELGCIDEAVELQSYLMK 746


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 126/500 (25%), Positives = 222/500 (44%), Gaps = 33/500 (6%)

Query: 81  LQRHLSPIARFITDAFRKNQFQWGPQVVTELSK---LRRVTPDLVAEVLKVENNPTLASK 137
           L RH+ PI  F        + +  P V++ LSK    + + PDLV   + +     L   
Sbjct: 3   LLRHIPPIIEFGKILGSLVKMKHYPTVIS-LSKQMEAKGIVPDLVTLSILINCFCHLGQM 61

Query: 138 FFHWA--GK--QKGYKHNFASYNALAYCLSRNNLFRAA--------------DQVPE--L 177
            F ++  GK  + GY+ N    N L   L      + +              DQV    L
Sbjct: 62  AFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGIL 121

Query: 178 MDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
           ++   +I E    +++L  +     +PDV  Y+ +I  L  ++ +D    ++ EM    +
Sbjct: 122 LNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGI 181

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
             DV+ Y TLI G C  G+++    L  EM    I  +   Y  LI+ L  EGKV ++ +
Sbjct: 182 FPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKN 241

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           LL  +   G + D+ IY+ ++ G C V +  KA ++F V VQ  + PD  + N ++    
Sbjct: 242 LLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLC 301

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SS 411
           +  R+D    LL +M  L  ++  D   +   + G  K  RI   LD+ +E+  +G  ++
Sbjct: 302 KGKRVDEAMNLLREM--LHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPAN 359

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           +  YN L+  L +   + KA+ LF KM+   ++ N  +++  I    + G + +      
Sbjct: 360 LVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQ 419

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
            ++       V  Y  +  GLCK G  D A+ + +  + +    P    + + I  +   
Sbjct: 420 HLLVKGYCIDVWTYTVMISGLCKEGMFDEALAM-KSKMEDNGCIPNAVTFEIIIRSLLEK 478

Query: 532 GEAEKIIEVLNEMTQEGCPP 551
            E +K  ++L+EM  +G  P
Sbjct: 479 DENDKAEKLLHEMIAKGLLP 498



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 171/382 (44%), Gaps = 35/382 (9%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD+   + +I        +     V  ++ K   + + +   TL+ GLC  G V +    
Sbjct: 43  PDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHF 102

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             ++   G  +D+  YG+L+ GL   G+   A  LL+ + D   R D+ +Y++II GLC+
Sbjct: 103 HDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCK 162

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            K  D+AY L+       + PD  T   L+      G++   F LL +M           
Sbjct: 163 DKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEM----------- 211

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
                              + + +    Y+    YN L+  L + G+VK++  L   M  
Sbjct: 212 -------------------ILKNINPNIYT----YNTLIDTLCKEGKVKESKNLLAVMTK 248

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             ++ + + +SI +  +   G++ +A +    +++    P V +YN +  GLCK   +D 
Sbjct: 249 KGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDE 308

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           AM L+R+ L      P    Y+  I  +C+ G    I+++  EM   G P N V  ++++
Sbjct: 309 AMNLLREMLHKNMI-PDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLL 367

Query: 561 SGMCKHGTLEEARKVFTNLRER 582
            G+CK+  L++A  +F  ++ER
Sbjct: 368 DGLCKNQNLDKAIALFMKMKER 389


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 194/421 (46%), Gaps = 14/421 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + EM  +L+ M RN  +PD   +  +I   A +  +D  + V+ +M++  +  +V+
Sbjct: 353 TKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVV 412

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I  LCK G V      F +M + G+  +  +Y  LI GL    K  KA +L+ ++
Sbjct: 413 CYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEM 472

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +D G   +   +NSII   C+  +  ++ KLF++ V+  + PD  T N L+  C   G+M
Sbjct: 473 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKM 532

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           D   KLLA M  +   V  D+  +   + G  +  R+  AL +F+E+   G S ++  YN
Sbjct: 533 DEATKLLASM--VSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYN 590

Query: 417 ILMGALLEIGEVKKA--LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           I++  L        A  LY+     G  LE+++ +  +   C     D  EA      + 
Sbjct: 591 IILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTD--EALRMFQNLC 648

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSG 532
                     +N +   L K G +D A  L      + A+G  P    Y+L   ++   G
Sbjct: 649 LTDLQLETRTFNIMIGALLKCGRMDEAKDLFA---AHSANGLVPDVRTYSLMAENLIEQG 705

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
             E++ ++   M + GC  +  + ++I+  + + G +  A      + E+    EA+T  
Sbjct: 706 SLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTAS 765

Query: 593 Y 593
           +
Sbjct: 766 F 766



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 114/493 (23%), Positives = 204/493 (41%), Gaps = 59/493 (11%)

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKM---RRNLCKPDVFAYTAMIRVLAAERN 218
            S NNL +        +  + R  E LE+L  M   R     PDV +Y  ++     E +
Sbjct: 164 FSYNNLLKG-------LCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGD 216

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
            D     + EM    +  DV+ Y ++I  LCK   + +  E+   M +NG++ D   Y  
Sbjct: 217 SDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNS 276

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           ++ G    G+  +A   LK +   G   ++  Y+S++  LC+  +  +A K+F+   +  
Sbjct: 277 ILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRG 336

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV---GKEERIM 395
           L PD +T   LL   A  G +     LL  M  ++  +  D    F  L+    K+E++ 
Sbjct: 337 LEPDIATYRTLLQGYATKGALVEMHALLDLM--VRNGIQPD-HHVFNILICAYAKQEKVD 393

Query: 396 MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM---------------- 438
            A+ VF +++  G + +V  Y  ++  L + G V  A+  F +M                
Sbjct: 394 QAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLI 453

Query: 439 ---------------------RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
                                RG+ L  N++ F+  I  H + G ++E+ +  + ++ + 
Sbjct: 454 HGLCTCDKWDKAEELILEMLDRGICL--NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 511

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P +  YN L  G C  G++D A  L+   + +V   P    Y   I   CR    +  
Sbjct: 512 VKPDIITYNTLIDGCCLAGKMDEATKLLASMV-SVGVKPDIVTYGTLINGYCRVSRMDDA 570

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           + +  EM   G  PN +  + I+ G+        A++++ ++ +     E +T  Y+ IL
Sbjct: 571 LALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELST--YNIIL 628

Query: 598 IEHMKKKTADLVL 610
               K    D  L
Sbjct: 629 HGLCKNNLTDEAL 641



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 184/411 (44%), Gaps = 24/411 (5%)

Query: 183 RIAEMLEI-LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL---VEADV 238
           R ++ ++I L +M    C PDVF+Y  +++ L  E      L +   M  D       DV
Sbjct: 142 RTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDV 201

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           ++Y T++ G  K G   + +  + EM + GIL D   Y  +I  L     + KA ++L  
Sbjct: 202 VSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNT 261

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +V +G   D   YNSI+ G C   Q  +A    +    D + P+  T + L+    + GR
Sbjct: 262 MVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGR 321

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK-------EERIMMALDVFEELKGKGYSS 411
                K+   M K    +  D+  +   L G        E   ++ L V   ++   +  
Sbjct: 322 STEARKIFDSMTKR--GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHH-- 377

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
             ++NIL+ A  +  +V +A+ +F KMR   L  N + +   I    +SG + +A     
Sbjct: 378 --VFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFE 435

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           ++I+    P++  Y  L  GLC   + D A  L+ + L       T F  ++   H C+ 
Sbjct: 436 QMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSH-CKE 494

Query: 532 G---EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           G   E+EK+ ++   M + G  P+ +  + +I G C  G ++EA K+  ++
Sbjct: 495 GRVIESEKLFDL---MVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASM 542



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/434 (22%), Positives = 172/434 (39%), Gaps = 50/434 (11%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHE---------------------------------- 259
           V   V  Y  LI   C+ GR+  G                                    
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 260 --LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD---SGYRADLGIYNSI 314
             + R M E G + D   Y  L++GL  E +  +A +LL  + D    G   D+  YN++
Sbjct: 148 DIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTV 207

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
           + G  +    DKAY  +   +   + PD  T + ++    +   MD   ++L  M  +K 
Sbjct: 208 LNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTM--VKN 265

Query: 375 SVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKA 431
            V  D   +   L G     +   A+   ++++  G   +V  Y+ LM  L + G   +A
Sbjct: 266 GVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEA 325

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
             +F  M    LE +  ++   +Q +   G ++E     + ++     P    +N L   
Sbjct: 326 RKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICA 385

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
             K  ++D A MLV   +      P    Y   I  +C+SG  +  +    +M  EG  P
Sbjct: 386 YAKQEKVDQA-MLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTP 444

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLS 611
           N ++ +++I G+C     ++A ++   + +R +    NTI ++ I+  H K+     V+ 
Sbjct: 445 NIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICL--NTIFFNSIIDSHCKEGR---VIE 499

Query: 612 GLKFFGLESKLKAK 625
             K F L  ++  K
Sbjct: 500 SEKLFDLMVRIGVK 513



 Score = 45.8 bits (107), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 76/168 (45%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R A   E+   + ++  + ++  Y  ++  L      D  LR+++ +    ++ +   + 
Sbjct: 601 RTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFN 660

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            +I  L K GR+    +LF     NG++ D   Y ++ E L+ +G + +  DL   + ++
Sbjct: 661 IMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEEN 720

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           G  AD  + NSI+  L +     +A     +  +   + + ST + LL
Sbjct: 721 GCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLL 768


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/465 (23%), Positives = 194/465 (41%), Gaps = 58/465 (12%)

Query: 138 FFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEML------- 188
           FF    + KG   +  +YN L  AYC  R  L   A Q+     S+G    +L       
Sbjct: 278 FFLSDMEGKGVFADIVTYNTLINAYC--REGLVEEAFQLLNSFSSRGMEPGLLTYNAILY 335

Query: 189 ------------EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
                       ++L +M +    P+   Y  ++  +    N+     +++EM +  V  
Sbjct: 336 GLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLP 395

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D++++ +LI  L + G + +    FREM+ +GI+ D  IY +LI+G    G +  A  + 
Sbjct: 396 DLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMR 455

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            +++  G   D+  YN+ + GLC+ K F  A  LF   V+  + PDF T   L+    + 
Sbjct: 456 DEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKD 515

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN 416
           G MD    L   M +                  K +++                    YN
Sbjct: 516 GNMDKALNLFEAMVRTNL---------------KPDKV-------------------TYN 541

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+    + GE+ +A  L+  M   ++  + +S+   +     SG + EA    ++++E 
Sbjct: 542 TLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEK 601

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P++   N L KG C+ G++  A   +   + N    P  F Y   I    +    EK
Sbjct: 602 GIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISN-GIIPDSFSYNTLIDGYLKEANLEK 660

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              ++NEM + G   N +  + I++G C  G ++EA +V   + E
Sbjct: 661 AFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIE 705



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/449 (21%), Positives = 195/449 (43%), Gaps = 28/449 (6%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           EI  ++ R   + +V+    M+  L  +R  +  +    +M+   V AD++ Y TLI   
Sbjct: 243 EIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAY 302

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C+ G V    +L       G+      Y  ++ GL   GK  +A D+L +++  G   + 
Sbjct: 303 CREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNA 362

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             YN+++  +CR     +A ++F+   +  + PD  + + L+   A  G +   ++ L  
Sbjct: 363 ATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHL---YQALMH 419

Query: 369 MEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLE 424
             +++ S        +  L+    +   +  AL + +E+  +G +  V  YN  +  L +
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCK 479

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
                 A  LF +M    +  +  +F+  I+ + + G++ +A      ++  +  P    
Sbjct: 480 KKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVT 539

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN L  G CK GE+  A  L  D +      P    Y   +   C SG   + + + ++M
Sbjct: 540 YNTLIDGFCKAGEMGRAKELWDDMIRKDII-PDHISYGTVLNGFCSSGLLPEALNLCDQM 598

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIVYDE------ 595
            ++G  PN V C+ +I G C+ G + +A +  + +    ++ ++   NT++         
Sbjct: 599 LEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANL 658

Query: 596 ----ILIEHMKKK-------TADLVLSGL 613
               ILI  M+K+       T +L+L+G 
Sbjct: 659 EKAFILINEMEKRGLQFNIITYNLILNGF 687



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 176/395 (44%), Gaps = 8/395 (2%)

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  ++R     + L      ++ +++  V   + A   L+ GL + G V    E++ E+ 
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
             GI ++     +++  L  + K       L D+   G  AD+  YN++I   CR    +
Sbjct: 250 RGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVE 309

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +A++L        + P   T N +L    ++G+ D    +L +M +L  +  A       
Sbjct: 310 EAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLL 369

Query: 386 FLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
             + + + I+ A ++F+E+  +G    +  ++ L+G L   G + +AL  F +M    + 
Sbjct: 370 VEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIV 429

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            +++ ++I I     +G + +A +  ++++       V  YN    GLCK      A ML
Sbjct: 430 PDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADML 489

Query: 505 VRDCL--GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
             + +  G V   P  + +   I   C+ G  +K + +   M +    P++V  + +I G
Sbjct: 490 FNEMVERGMV---PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDG 546

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            CK G +  A++++ ++  + ++ +   I Y  +L
Sbjct: 547 FCKAGEMGRAKELWDDMIRKDIIPDH--ISYGTVL 579


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/513 (22%), Positives = 213/513 (41%), Gaps = 67/513 (13%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS--------------------QGRI 184
           ++G+KH   +Y ++   L  +  F   + +   M S                    +G+I
Sbjct: 112 KQGFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSNLDNTLLEGVYVEAMRFYGRKGKI 171

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E ++  E+M    C P V++Y A++ +L      +   +V+  MK   VE+DV  Y   
Sbjct: 172 QEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIR 231

Query: 245 IMGLCKGGR-------------------------VV----------RGHELFREMKENGI 269
           I   C+ GR                         VV          R  ELF EM E  +
Sbjct: 232 IKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCL 291

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
             D   +  L+  L  +G V ++  L   ++  G   +L  +N  I GLC+    D+A +
Sbjct: 292 CPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVR 351

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-----EKLKFSVAADLEKFF 384
           L     ++ L PD  T N ++       R+    + L +M     E   F+  + ++ + 
Sbjct: 352 LLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYC 411

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
           +  +  +   ++   VF+  K   ++    Y  L+    + G+  +A+ +F    G  L 
Sbjct: 412 KKGMVVDANRILKDAVFKGFKPDEFT----YCSLVNGFCQDGDPDQAMAVFKDGLGKGLR 467

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            + + ++  I+   + G IL A +  N++ E    P +  YN +  GLCK+G +  A  L
Sbjct: 468 PSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHL 527

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
           + D +      P  F Y   +   CR  + +  IE++N M  +G  P+ +  + +++G+C
Sbjct: 528 IGDAITK-GCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLC 586

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           K    EE  ++F  + E+      N I Y+ I+
Sbjct: 587 KTAKSEEVMEIFKAMTEKG--CAPNIITYNTII 617



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 109/517 (21%), Positives = 208/517 (40%), Gaps = 64/517 (12%)

Query: 156 NALAYCLSRNNL--FRAADQVPELMD----------------------SQGRIAEMLEIL 191
           NA+AYC        F   D+  EL D                       +G + E   + 
Sbjct: 259 NAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLF 318

Query: 192 EK-MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
           +K ++R +C P++F +   I+ L  E +LD  +R+   + ++ +  DV+ Y T+I GLC+
Sbjct: 319 DKVLKRGVC-PNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCR 377

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
             RVV   E   +M   G   +   Y  +I+G   +G V  A  +LKD V  G++ D   
Sbjct: 378 KSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFT 437

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM- 369
           Y S++ G C+    D+A  +F+  +   L P     N L+    + G +    +L+ +M 
Sbjct: 438 YCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMA 497

Query: 370 --------------------------------EKLKFSVAADLEKFFEFLVG--KEERIM 395
                                           + +      D+  +   + G  ++ ++ 
Sbjct: 498 EKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLD 557

Query: 396 MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
            A+++   +  +G +  V  YN L+  L +  + ++ + +F  M       N ++++  I
Sbjct: 558 SAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTII 617

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
           +    S  + EA +   ++      P V ++  L  G CK+G++D A  L R        
Sbjct: 618 ESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDV 677

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
             T   Y + I         +  + + +EM + GC P+      +I G CK G + +  K
Sbjct: 678 SHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYK 737

Query: 575 VFTNLRERKLLTEANTI--VYDEILIEHMKKKTADLV 609
                 E+  +    T   V + + +EH  ++   ++
Sbjct: 738 FLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGII 774



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 180/412 (43%), Gaps = 14/412 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + +   IL+       KPD F Y +++     + + D  + V+++     +   ++ 
Sbjct: 413 KGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIV 472

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI GLC+ G ++   +L  EM E G   D   Y ++I GL   G +  A  L+ D +
Sbjct: 473 YNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAI 532

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D+  YN+++ G CR  + D A +L        + PD  T N LL    +  + +
Sbjct: 533 TKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSE 592

Query: 361 NFFKLLAQM-EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
              ++   M EK             E L    +++  A+D+  E+K KG +  V  +  L
Sbjct: 593 EVMEIFKAMTEKGCAPNIITYNTIIESLC-NSKKVNEAVDLLGEMKSKGLTPDVVSFGTL 651

Query: 419 MGALLEIGEVKKALYLF-GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           +    ++G++  A  LF G  +  ++   + +++I I    E  ++  A    +++ +  
Sbjct: 652 ITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNG 711

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAE 535
             P    Y  L  G CK G ++     +   L N+  G  P+   +   +  +C   + +
Sbjct: 712 CDPDNYTYRVLIDGFCKTGNVNQGYKFL---LENIEKGFIPSLTTFGRVLNCLCVEHKVQ 768

Query: 536 KIIEVLNEMTQEGCPPNEV--ICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
           + + +++ M Q+   P+ V  I  A   G   H T      ++  +R++K+L
Sbjct: 769 EAVGIIHLMVQKDIVPDTVNTIFEADKKG---HITYHAYEFLYDGVRDKKIL 817



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 19/210 (9%)

Query: 142 AGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           A  +KG   N  +YN +               +  L +S+ ++ E +++L +M+     P
Sbjct: 600 AMTEKGCAPNIITYNTI---------------IESLCNSK-KVNEAVDLLGEMKSKGLTP 643

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMAYVTLIMGLCKGGRVVRGHEL 260
           DV ++  +I       +LD    ++  M+K   V      Y  +I    +   +     L
Sbjct: 644 DVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRL 703

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F EMK+NG   D   Y VLI+G    G V +    L + ++ G+   L  +  ++  LC 
Sbjct: 704 FSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCV 763

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
             +  +A  +  + VQ D+ PD  TVN + 
Sbjct: 764 EHKVQEAVGIIHLMVQKDIVPD--TVNTIF 791


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/516 (21%), Positives = 216/516 (41%), Gaps = 55/516 (10%)

Query: 144 KQKGYKHNFASYNALAYCLSRNN-------LFRAA---DQVP----------ELMDSQGR 183
           ++ G + +F SYN +   L+R +       L+R     D+VP            +   GR
Sbjct: 131 RRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGR 190

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
             E L +L  M R+ C PD   Y  +I  L  +  +     +  EM      ADV  +  
Sbjct: 191 ANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDD 250

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL-------------------- 283
           ++ G+C  GRV     L   M   G +     YG L++GL                    
Sbjct: 251 VVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELN 310

Query: 284 -----------VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
                      + EGK+ +A +L + +   G + D   Y+ ++ GLC++ +   A +L  
Sbjct: 311 VVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLR 370

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392
              +   AP+  T   +L    + G  D+   LL +M     ++ +       + + K+ 
Sbjct: 371 EMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDG 430

Query: 393 RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
           R+  A+ + +E++ +G +  +  YN ++  L    ++++A ++F  +    +  N ++++
Sbjct: 431 RMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYN 490

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
             I   +  G   +A     ++I       V +YN L K +CK G +D +++L+ + +  
Sbjct: 491 TIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE-MAE 549

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
               P    Y + I  +C+       +E+  +M  +G  P+ V  + +I+G+CK G +  
Sbjct: 550 KGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHA 609

Query: 572 ARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           A  +   L    +    + I Y+ ++  H K +  D
Sbjct: 610 ALNLLEKLHNENV--HPDIITYNILISWHCKVRLLD 643



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 164/371 (44%), Gaps = 35/371 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G++AE  E+ E M    C+PD   Y+ ++  L     + + +R+  EM+K     +V+
Sbjct: 323 AEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVV 382

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  ++   CK G       L  EM   G+ ++   Y  +I  L  +G++ +A  L++++
Sbjct: 383 TYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEM 442

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   D+  YN+II  LC  +Q ++A  +FE  +++ +  +  T N ++      GR 
Sbjct: 443 RSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRW 502

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
            +  +L  +M                 L G       +LDV              YN L+
Sbjct: 503 QDAVRLAKEM----------------ILHG------CSLDVVS------------YNGLI 528

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            A+ + G V ++L L  +M    ++ N++S++I I    +   + +A E   +++     
Sbjct: 529 KAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLA 588

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P +  YN L  GLCK+G + AA+ L+   L N    P    Y + I   C+    +    
Sbjct: 589 PDIVTYNTLINGLCKMGWMHAALNLLEK-LHNENVHPDIITYNILISWHCKVRLLDDAAM 647

Query: 540 VLNEMTQEGCP 550
           +LN      CP
Sbjct: 648 LLNRAMAAVCP 658



 Score = 40.4 bits (93), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 26/134 (19%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           +KG K N  SYN L               + EL   + R+ + LE+ ++M      PD+ 
Sbjct: 549 EKGIKPNNVSYNIL---------------ISELCKER-RVRDALELSKQMLNQGLAPDIV 592

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  +I  L     + A L + E++  + V  D++ Y  LI   CK           R +
Sbjct: 593 TYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCK----------VRLL 642

Query: 265 KENGILIDRAIYGV 278
            +  +L++RA+  V
Sbjct: 643 DDAAMLLNRAMAAV 656


>gi|302763305|ref|XP_002965074.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
 gi|300167307|gb|EFJ33912.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
          Length = 484

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 195/468 (41%), Gaps = 63/468 (13%)

Query: 119 PDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM 178
           P LV  V++   +  LA KFF W+ KQ+GY+H+   Y  L + L R              
Sbjct: 11  PRLVGSVIRRVPSLALARKFFDWSSKQEGYRHDVYCYTRLLHHLVRAR------------ 58

Query: 179 DSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
               R  E +   ++     C+P ++++T +I+     RN     R    M+   +  DV
Sbjct: 59  ----RTREAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDV 114

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
            AY  ++ G C  GRV R                          L+  GK+GK C     
Sbjct: 115 TAYNVVLKGYCDLGRVGR-------------------------ALIKFGKMGKTC----- 144

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
                 + ++  YN++I GLC+  + D A  LF     D + PD  T + L+    +  R
Sbjct: 145 ------KPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAER 198

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL-KGKGYSSVPIYNI 417
           ++   K+   M +  +   A           KE R+  AL+V + + + +   SV  YN 
Sbjct: 199 LEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRRCKPSVVTYNC 258

Query: 418 LMGALLEI-GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           ++  + +    +++A  LF +M G +   N++++   I   +    I E   C      M
Sbjct: 259 IINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMI---LGLSKIYEVQRCLELFKGM 315

Query: 477 SQV---PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           S+    P   AY+ L     K+ ++D A  +++D   N   GP  + Y   I   CR+ +
Sbjct: 316 SKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARN-HVGPDVYMYTTLISGYCRARK 374

Query: 534 --AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
              ++ + +   M      PN +  + ++ G+CK G  +EA ++F  +
Sbjct: 375 PRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEM 422



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/308 (19%), Positives = 132/308 (42%), Gaps = 8/308 (2%)

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           GYR D+  Y  ++  L R ++  +A + F+  +     P   +   ++ C   +      
Sbjct: 39  GYRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRA 98

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGYSSVPIYNILMG 420
           ++ L  M  L   +  D+  +   L G  +  R+  AL  F ++      +V  YN ++ 
Sbjct: 99  WRYLGYMRSL--GIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMGKTCKPNVATYNTVIN 156

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L + G++  A++LF ++    ++ +  ++S  +    ++  +  A + ++ ++E +   
Sbjct: 157 GLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDG 216

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR-SGEAEKIIE 539
              AYN +  G CK   +D A+ +++  +      P+   Y   I  VC+     E+   
Sbjct: 217 DAGAYNAMADGFCKERRVDEALEVLKTMIQRRCK-PSVVTYNCIINGVCQYKNRIEEAYR 275

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           +  +M    CPPN V    +I G+ K   ++   ++F  + +  L    +   Y  ++  
Sbjct: 276 LFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGL--SPDGYAYHSLIYA 333

Query: 600 HMKKKTAD 607
            +K +  D
Sbjct: 334 FVKVRKLD 341



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 2/123 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER--NLDACLRVWEEMKKDLVEADVMA 240
           ++ E   IL+   RN   PDV+ YT +I      R   +D  L +++ MK   V  +V+ 
Sbjct: 339 KLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVIT 398

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  ++ GLCK GR    +++F+EM +     +R  + V+  G++   K  K   +  D+V
Sbjct: 399 YNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGMIHCRKTDKFERIFMDMV 458

Query: 301 DSG 303
             G
Sbjct: 459 YKG 461


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 161/348 (46%), Gaps = 35/348 (10%)

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           + D +   TL+ GLC  G V +      ++   G  +D   YG L+ GL   G+   A  
Sbjct: 77  QPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVK 136

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           LL+ + D   R ++ +YN+II GLC+ K  ++AY L+       + PD  T   L+    
Sbjct: 137 LLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFC 196

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI 414
            +G++   F LL                        +E I+  ++            V I
Sbjct: 197 LLGQLMGAFSLL------------------------DEMILKNIN----------PGVYI 222

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YNIL+ AL + G VK+A  L   M    ++   +++S  +  +   G++  A +  + ++
Sbjct: 223 YNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMV 282

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           +M   P+V +YN +  GLCK   +D AM L+R+ L      P    Y   I  +C+SG  
Sbjct: 283 QMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMV-PDTVTYNSLIDGLCKSGRI 341

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
              + ++NEM   G P + V  ++++  +CK+  L++A  +F  ++ER
Sbjct: 342 TSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKER 389



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 198/467 (42%), Gaps = 35/467 (7%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           KG + NF + N L  C                    G++A    +L K+ +   +PD   
Sbjct: 39  KGIRANFVTLNILINCFCH----------------LGQMAFSFSVLGKILKLGYQPDTIT 82

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
              +++ L  +  +   L   +++     + D ++Y TL+ GLCK G      +L R ++
Sbjct: 83  LNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIE 142

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           +     +  +Y  +I+GL  +  V +A DL  ++   G   D   Y ++I G C + Q  
Sbjct: 143 DRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLM 202

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-------LKFSVAA 378
            A+ L +  +  ++ P     N L+    + G +     LLA M K       + +S   
Sbjct: 203 GAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLM 262

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
           D       LVG+ +    A  +F  +   G + +V  YNI++  L +   V +A+ L  +
Sbjct: 263 D----GYCLVGEVQN---AKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLRE 315

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M   N+  ++++++  I    +SG I  A    N++    Q   V  Y  L   LCK   
Sbjct: 316 MLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQN 375

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           +D A  L    +      PT + Y   I  +C+ G  +   E+   +  +GC  +    +
Sbjct: 376 LDKATALFMK-MKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYT 434

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
            +ISG+CK G  +EA  + + + +   +  A T    EI+I  + +K
Sbjct: 435 VMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTF---EIIIRSLFEK 478



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 107/459 (23%), Positives = 189/459 (41%), Gaps = 67/459 (14%)

Query: 136 SKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMR 195
           S  FH     +G++ +  SY  L   L +    R A ++  +++ +              
Sbjct: 99  SLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRST------------ 146

Query: 196 RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVV 255
               +P+V  Y  +I  L  ++ ++    ++ EM    +  D + Y TLI G C  G+++
Sbjct: 147 ----RPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLM 202

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
               L  EM    I     IY +LI  L  EG V +A +LL  +   G +  +  Y++++
Sbjct: 203 GAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLM 262

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            G C V +   A ++F   VQ  + P+  + N ++    +  R+D    LL +M  L  +
Sbjct: 263 DGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREM--LHKN 320

Query: 376 VAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKAL 432
           +  D   +   + G  K  RI  AL++  E+  +G  + V  Y  L+ AL +   + KA 
Sbjct: 321 MVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKAT 380

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            LF KM+                                   E    P++  Y  L  GL
Sbjct: 381 ALFMKMK-----------------------------------ERGIQPTMYTYTALIDGL 405

Query: 493 CKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           CK G +  A      +LV+ C  +V      + Y + I  +C+ G  ++ + + ++M   
Sbjct: 406 CKGGRLKNAQELFQHLLVKGCCIDV------WTYTVMISGLCKEGMFDEALAIKSKMEDN 459

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
           GC PN V    II  + +    ++A K+   +  + LL 
Sbjct: 460 GCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLV 498



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 105/233 (45%), Gaps = 21/233 (9%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSR-------NNLFRAA---DQVPE------LM 178
           A + FH A  Q G   N  SYN +   L +        NL R     + VP+      L+
Sbjct: 274 AKQIFH-AMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLI 332

Query: 179 DS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           D     GRI   L ++ +M       DV  YT+++  L   +NLD    ++ +MK+  ++
Sbjct: 333 DGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQ 392

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
             +  Y  LI GLCKGGR+    ELF+ +   G  ID   Y V+I GL  EG   +A  +
Sbjct: 393 PTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAI 452

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVN 347
              + D+G   +   +  II  L    + DKA KL  E+  +  L  DF   +
Sbjct: 453 KSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLVLDFKVAD 505



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 122/276 (44%), Gaps = 7/276 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + E   +L  M +   KP V  Y+ ++        +    +++  M +  V  +V +
Sbjct: 233 EGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYS 292

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I GLCK  RV     L REM    ++ D   Y  LI+GL   G++  A +L+ ++ 
Sbjct: 293 YNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMH 352

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G  AD+  Y S++  LC+ +  DKA  LF    +  + P   T   L+    + GR+ 
Sbjct: 353 HRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLK 412

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
           N  +L   +  L      D+  +   + G  KE     AL +  +++  G   +   + I
Sbjct: 413 NAQELFQHL--LVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEI 470

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
           ++ +L E  E  KA  L  +M    L V  L F +A
Sbjct: 471 IIRSLFEKDENDKAEKLLHEMIAKGLLV--LDFKVA 504


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/465 (23%), Positives = 194/465 (41%), Gaps = 58/465 (12%)

Query: 138 FFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEML------- 188
           FF    + KG   +  +YN L  AYC  R  L   A Q+     S+G    +L       
Sbjct: 278 FFLSDMEGKGVFADIVTYNTLINAYC--REGLVEEAFQLLNSFSSRGMEPGLLTYNAILY 335

Query: 189 ------------EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
                       ++L +M +    P+   Y  ++  +    N+     +++EM +  V  
Sbjct: 336 GLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLP 395

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D++++ +LI  L + G + +    FREM+ +GI+ D  IY +LI+G    G +  A  + 
Sbjct: 396 DLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMR 455

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            +++  G   D+  YN+ + GLC+ K F  A  LF   V+  + PDF T   L+    + 
Sbjct: 456 DEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKD 515

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN 416
           G MD    L   M +                  K +++                    YN
Sbjct: 516 GNMDKALNLFEAMVRTNL---------------KPDKV-------------------TYN 541

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+    + GE+ +A  L+  M   ++  + +S+   +     SG + EA    ++++E 
Sbjct: 542 TLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEK 601

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P++   N L KG C+ G++  A   +   + N    P  F Y   I    +    EK
Sbjct: 602 GIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISN-GIIPDSFSYNTLIDGYLKEANLEK 660

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              ++NEM + G   N +  + I++G C  G ++EA +V   + E
Sbjct: 661 AFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIE 705



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 98/449 (21%), Positives = 195/449 (43%), Gaps = 28/449 (6%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           EI  ++ R   + +V+    M+  L  +R  +  +    +M+   V AD++ Y TLI   
Sbjct: 243 EIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAY 302

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C+ G V    +L       G+      Y  ++ GL   GK  +A D+L +++  G   + 
Sbjct: 303 CREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNA 362

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             YN+++  +CR     +A ++F+   +  + PD  + + L+   A  G +   ++ L  
Sbjct: 363 ATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHL---YQALMH 419

Query: 369 MEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLE 424
             +++ S        +  L+    +   +  AL + +E+  +G +  V  YN  +  L +
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCK 479

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
                 A  LF +M    +  +  +F+  I+ + + G++ +A      ++  +  P    
Sbjct: 480 KKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVT 539

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN L  G CK GE+  A  L  D +      P    Y   +   C SG   + + + ++M
Sbjct: 540 YNTLIDGFCKAGEMGRAKELWDDMIRKDII-PDHISYGTVLNGFCSSGLLPEALNLCDQM 598

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIVYDE------ 595
            ++G  PN V C+ +I G C+ G + +A +  + +    ++ ++   NT++         
Sbjct: 599 LEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANL 658

Query: 596 ----ILIEHMKKK-------TADLVLSGL 613
               ILI  M+K+       T +L+L+G 
Sbjct: 659 EKAFILINEMEKRGLQFNIITYNLILNGF 687



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 176/395 (44%), Gaps = 8/395 (2%)

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  ++R     + L      ++ +++  V   + A   L+ GL + G V    E++ E+ 
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
             GI ++     +++  L  + K       L D+   G  AD+  YN++I   CR    +
Sbjct: 250 RGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVE 309

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +A++L        + P   T N +L    ++G+ D    +L +M +L  +  A       
Sbjct: 310 EAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLL 369

Query: 386 FLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
             + + + I+ A ++F+E+  +G    +  ++ L+G L   G + +AL  F +M    + 
Sbjct: 370 VEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIV 429

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            +++ ++I I     +G + +A +  ++++       V  YN    GLCK      A ML
Sbjct: 430 PDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADML 489

Query: 505 VRDCL--GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
             + +  G V   P  + +   I   C+ G  +K + +   M +    P++V  + +I G
Sbjct: 490 FNEMVERGMV---PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDG 546

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            CK G +  A++++ ++  + ++ +   I Y  +L
Sbjct: 547 FCKAGEMGRAKELWDDMIRKDIIPDH--ISYGTVL 579


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 120/554 (21%), Positives = 228/554 (41%), Gaps = 77/554 (13%)

Query: 88  IARFITDAFRKNQFQWGPQVVTELSKLRR---VTPDLVAEVLK-VENNPTLASKFFHWAG 143
           I  F+   FR   F   PQ+   ++         P+ +  VL  V++ P  A +FF W  
Sbjct: 17  ITLFLKPHFRFYPFSTNPQIDNSVNPHFHSAVTQPEFLLRVLNSVKHRPLTALRFFRWVE 76

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPE----------LMDSQ-----GRIAEM- 187
           KQ  +  +  ++ A+   L++N   + A  V E          ++D       GR +E+ 
Sbjct: 77  KQPNFHRSETAFVAILDILAKNGFMKPAYWVMEKAIEVKVDGGVLDVLVGIGCGRNSEVS 136

Query: 188 --------------------LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWE 227
                               L +  KM  N   PDV     ++++L  +  ++    V+ 
Sbjct: 137 VKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYS 196

Query: 228 EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
            M K  +   ++ + T++   CK G V R  E+   M+  G   +   Y VL+ GL G+G
Sbjct: 197 VMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKG 256

Query: 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
           +  +A +L++ +   G +     YN +I G C+ + F++A  L    +     P   T N
Sbjct: 257 EFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYN 316

Query: 348 PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK 407
            ++     +GR+                  +D  ++ + +V +        D+  +L   
Sbjct: 317 TIMYSLCRLGRV------------------SDARRYLDVMVNE--------DLMPDLVS- 349

Query: 408 GYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
                  YN L+     +G   +AL LF ++R  NL  + ++++  I     +G++  A 
Sbjct: 350 -------YNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAK 402

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
              + +I+    P V  +  L +G C++G +  A  L  + L      P    Y   I+ 
Sbjct: 403 GMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSR-GLKPDCIAYTTRIVG 461

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
             + G   K   +  EM  EG PP+ +  + +I+G+CK G  ++A ++   +R   ++ +
Sbjct: 462 ELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPD 521

Query: 588 ANTIVYDEILIEHM 601
              + Y  I+  H+
Sbjct: 522 H--VTYTSIIHAHL 533



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/463 (22%), Positives = 209/463 (45%), Gaps = 18/463 (3%)

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
           R  ++V +L+  +  + E+ E+   M +   +P +  +  M+     E  +   + V + 
Sbjct: 173 RNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDV 232

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           M+    + + ++Y  L+ GL   G   R  EL  +M   G+ +    Y  LI G   +  
Sbjct: 233 MRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEM 292

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
             +A DL ++++  G    +  YN+I+  LCR+ +   A +  +V V +DL PD  + N 
Sbjct: 293 FEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNT 352

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKF-SVAADLEKFFEFLVG--KEERIMMALDVFEELK 405
           L+   + +G   NF + L    +L+  ++   +  +   + G  +   + +A  + +++ 
Sbjct: 353 LIYGYSRLG---NFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMI 409

Query: 406 GKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
             G    V  + IL+    ++G +  A  LF +M    L+ + ++++  I   ++ G+  
Sbjct: 410 KHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPS 469

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYAL 523
           +A     ++      P +  YN L  GLCK+G  D A  LV+   L  +   P    Y  
Sbjct: 470 KAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIV--PDHVTYTS 527

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I     SG   K  EV ++M ++G  P+ V  + +I      G L+ A+K F  ++++ 
Sbjct: 528 IIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKG 587

Query: 584 LLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKG 626
           +    N I Y+ ++    K+   D+       + L +++++KG
Sbjct: 588 V--SPNVITYNALIYGLCKENMMDVA------YNLFAEMESKG 622



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 106/468 (22%), Positives = 192/468 (41%), Gaps = 47/468 (10%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           +MDS   +G +   +E+L+ MR   C P+  +Y  ++  L+ +   D    + E+M    
Sbjct: 213 MMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLG 272

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           ++     Y  LI G CK       ++L REM   G L     Y  ++  L   G+V  A 
Sbjct: 273 LKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDAR 332

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
             L  +V+     DL  YN++I G  R+  F +A  LF      +L P   T N L+   
Sbjct: 333 RYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGG 392

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVF---------- 401
              G +D    +   M  +K  +  D+  F   + G  +   + MA ++F          
Sbjct: 393 CRTGNLDIAKGMKDDM--IKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKP 450

Query: 402 -------------------------EELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
                                    EE+K +G+   +  YN+L+  L ++G    A  L 
Sbjct: 451 DCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELV 510

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            KMR   +  + ++++  I  H+ SG + +A E  + +++    PSV  Y  L       
Sbjct: 511 QKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVR 570

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G +D A     D + +    P    Y   I  +C+    +    +  EM  +G  PN+  
Sbjct: 571 GRLDFAKKYF-DEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYT 629

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
            + +I+        ++A K++ ++ +R++  ++ T      L++H+ K
Sbjct: 630 YTILINENSNLQYWQDALKLYKDMLDREIKPDSCT---HSALMKHLSK 674



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 146/355 (41%), Gaps = 17/355 (4%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           +  SYN L Y  SR                 G  AE L +  ++R     P V  Y  +I
Sbjct: 346 DLVSYNTLIYGYSR----------------LGNFAEALLLFSELRSKNLVPSVVTYNTLI 389

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
                  NLD    + ++M K  +  DV+ +  L+ G C+ G +    ELF EM   G+ 
Sbjct: 390 DGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLK 449

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
            D   Y   I G +  G   KA  + +++   G+  DL  YN +I GLC++  FD A +L
Sbjct: 450 PDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANEL 509

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK 390
            +    + + PD  T   ++      G +    ++ + M K     +             
Sbjct: 510 VQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAV 569

Query: 391 EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
             R+  A   F+E++ KG S +V  YN L+  L +   +  A  LF +M    +  N  +
Sbjct: 570 RGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYT 629

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
           ++I I  +       +A + +  +++    P    ++ L K L K  ++ A + L
Sbjct: 630 YTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHLSKDYKLLAVLRL 684


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 210/466 (45%), Gaps = 32/466 (6%)

Query: 115 RRVTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQ 173
           + + P +  EV+K ++NNP +  +F+ ++  +   +H+F +YN L   L +  +   A Q
Sbjct: 65  KNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGMHDLAGQ 124

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLC-KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
           + E M S G I+    +L  +  +   K  +   TA++            L+ +E     
Sbjct: 125 MFECMKSDG-ISPNSRLLGFLVSSFAEKGKLHCATALL------------LQSYE----- 166

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            VE   M   +L+  L K  RV    +LF E        D   + +LI GL G GK  KA
Sbjct: 167 -VEGCCMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKA 225

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLV 351
            +LL  +   G   D+  YN++I G C+  +  KA ++F +V      +PD  T   ++ 
Sbjct: 226 VELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMIS 285

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS- 410
              + G+M     LL  M  L+  +      F   + G  +   M     EE++GK  S 
Sbjct: 286 GYCKAGKMQEASVLLDDM--LRLGIYPTNVTFNVLVDGYAKAGEM--HTAEEIRGKMISF 341

Query: 411 ----SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
                V  +  L+     +G+V +   L+ +M    +  N+ ++SI I    +   +L+A
Sbjct: 342 GCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKA 401

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
            E   ++     +P    YN +  G CK G+++ A+++V + +      P +  + + I+
Sbjct: 402 RELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEE-MEKKKCKPDKITFTILII 460

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
             C  G   + + + ++M   GC P+++  S+++S + K G  +EA
Sbjct: 461 GHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEA 506



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 170/386 (44%), Gaps = 12/386 (3%)

Query: 223 LRVWEEMKKDL-VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
            R WE  +  L +      Y  L   LCK G      ++F  MK +GI  +  + G L+ 
Sbjct: 87  FRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVS 146

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
               +GK+  A  LL  L          + NS++  L ++ + + A KLFE  ++     
Sbjct: 147 SFAEKGKLHCATALL--LQSYEVEGCCMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCN 204

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALD 399
           D  T N L+     +G+ +   +LL  M    F    D+  +   + G  K   +  A +
Sbjct: 205 DTKTFNILIRGLCGVGKAEKAVELLGGMSG--FGCLPDIVTYNTLIKGFCKSNELKKANE 262

Query: 400 VFEELKGKGYSS--VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
           +F+++K     S  V  Y  ++    + G++++A  L   M  L +   +++F++ +  +
Sbjct: 263 MFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGY 322

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
            ++G++  A E   K+I     P V  +  L  G C++G+++    L  + +      P 
Sbjct: 323 AKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEE-MNARGMFPN 381

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
            F Y++ I  +C+     K  E+L ++  +   P   + + +I G CK G + EA  +  
Sbjct: 382 AFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVE 441

Query: 578 NLRERKLLTEANTIVYDEILIEHMKK 603
            + ++K   + + I +  ++I H  K
Sbjct: 442 EMEKKK--CKPDKITFTILIIGHCMK 465



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 146/354 (41%), Gaps = 43/354 (12%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMA 240
           G+  + +E+L  M    C PD+  Y  +I+       L     +++++K       DV+ 
Sbjct: 220 GKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVT 279

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y ++I G CK G++     L  +M   GI      + VL++G    G++  A ++   ++
Sbjct: 280 YTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMI 339

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGR 358
             G   D+  + S+I G CRV Q ++ ++L+E      + P+  T + L+  +C      
Sbjct: 340 SFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALC------ 393

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYNI 417
                                          KE R++ A ++  +L  K     P +YN 
Sbjct: 394 -------------------------------KENRLLKARELLGQLASKDIIPQPFMYNP 422

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++    + G+V +A+ +  +M     + + ++F+I I  H   G + EA    +K++ + 
Sbjct: 423 VIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIG 482

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASG-PTEFKYALTILHVC 529
             P     + L   L K G    A  L +    G +  G P E K A   L  C
Sbjct: 483 CSPDKITVSSLLSCLLKAGMAKEAYHLNQIAHKGQINDGAPLETKTANVTLAAC 536



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 3/208 (1%)

Query: 177 LMDSQGRIAEML---EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L+D   +  EM    EI  KM    C PDV  +T++I        ++   R+WEEM    
Sbjct: 318 LVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARG 377

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  +   Y  LI  LCK  R+++  EL  ++    I+    +Y  +I+G    GKV +A 
Sbjct: 378 MFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAI 437

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            +++++     + D   +  +I G C   +  +A  +F   V    +PD  TV+ LL C 
Sbjct: 438 VIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCL 497

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            + G     + L     K + +  A LE
Sbjct: 498 LKAGMAKEAYHLNQIAHKGQINDGAPLE 525


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 113/508 (22%), Positives = 208/508 (40%), Gaps = 51/508 (10%)

Query: 88  IARFITDAFRKNQFQWGPQV---------VTELSKLRRVTPDLVAEVLKVENNPTLASKF 138
           + R + D  + NQ  +G  V         V+ L+ LR++      E+  ++ N  + S  
Sbjct: 201 LDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKM-----EEMSHIKPNVVIYSAI 255

Query: 139 FH--WAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD---SQGRIAEMLEILEK 193
               W   +    HN  +       +    +F        ++D   S GR +E   +L++
Sbjct: 256 IDGLWKDGRHSDAHNLYTE------MQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQE 309

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M      P+V  Y+A+I     ER       +++EM    +  + + Y ++I G CK  R
Sbjct: 310 MLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNR 369

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           +     +F  M   G   D   +  LI+G  G  ++    +LL ++ ++G  AD   YN+
Sbjct: 370 LDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNT 429

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           +I G C V   + A  L +  +   + PD  T N LL    + G++ +  ++   M+K K
Sbjct: 430 LIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSK 489

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALY 433
                                 M LD      G     V  YNIL+  L+  G+  +A  
Sbjct: 490 ----------------------MDLDASRPFNGV-EPDVQTYNILISGLINEGKFLEAEE 526

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           L+ +M    +  N++++S  I    +   + EA +  + +   S  P V  +N L  G C
Sbjct: 527 LYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYC 586

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS-GEAEKIIEVLNEMTQEGCPPN 552
           K G +D  + L  + +G          Y +T++H  R  G     +++  EM   G  P+
Sbjct: 587 KAGRVDDGLELFCE-MGRRGIVADAITY-ITLIHGFRKVGNINGALDIFQEMISSGVYPD 644

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLR 580
            +   ++++ +     L+ A  +  +L+
Sbjct: 645 TITIRSMLTVLWSKEELKRAVAMLEDLQ 672



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 188/428 (43%), Gaps = 24/428 (5%)

Query: 182 GRIAEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           G     L +L KM   +  KP+V  Y+A+I  L  +        ++ EM++  +  D+  
Sbjct: 227 GDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFT 286

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G C  GR      L +EM E  I  +   Y  LI   V E K  +A +L  +++
Sbjct: 287 YNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEML 346

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   +   YNS+I G C+  + D A  +F V      +PD  T N L+       R+D
Sbjct: 347 PRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRID 406

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEF-----LVGKEERIMMALDVFEELKGKGYS-SVPI 414
           +  +LL +M +    + AD   +        LVG    +  ALD+ +++   G    +  
Sbjct: 407 DGTELLHEMTET--GLVADTTTYNTLIHGFCLVGD---LNAALDLSQQMISSGVCPDIVT 461

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNS-----------LSFSIAIQCHVESGDI 463
            N L+  L + G++K AL +F  M+   +++++            +++I I   +  G  
Sbjct: 462 CNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKF 521

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
           LEA E + ++     VP+   Y+ +  GLCK   +D A  +  D +G+ +  P    +  
Sbjct: 522 LEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMF-DSMGSKSFSPDVVTFNT 580

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            +   C++G  +  +E+  EM + G   + +    +I G  K G +  A  +F  +    
Sbjct: 581 LVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSG 640

Query: 584 LLTEANTI 591
           +  +  TI
Sbjct: 641 VYPDTITI 648



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/510 (20%), Positives = 214/510 (41%), Gaps = 72/510 (14%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           S+N L  C      F +  ++P  + + G+I ++            +PDV  ++ ++  L
Sbjct: 114 SFNILIKC------FCSCSKLPFALSTFGKITKLG----------FQPDVVTFSTLLHGL 157

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
             E  +   L ++ +M +     +V+ + TL+ GLC+ GRVV    L   M E+G+  ++
Sbjct: 158 CVEDRVSEALDLFHQMCR----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQ 213

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVD-SGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
             YG +++G+   G    A +LL+ + + S  + ++ IY++II GL +  +   A+ L+ 
Sbjct: 214 ITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYT 273

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392
              +  + PD  T N ++      GR     +LL +M + K +              KE 
Sbjct: 274 EMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKER 333

Query: 393 RIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
           +   A ++++E+  +G     I YN ++    +   +  A ++F  M       +  +F+
Sbjct: 334 KFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFN 393

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-- 509
             I  +  +  I +  E  +++ E   V     YN L  G C +G+++AA+ L +  +  
Sbjct: 394 TLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISS 453

Query: 510 -------------------GNVASGPTEFK------------------------YALTIL 526
                              G +      FK                        Y + I 
Sbjct: 454 GVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILIS 513

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
            +   G+  +  E+  EM   G  PN +  S++I+G+CK   L+EA ++F ++  +    
Sbjct: 514 GLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSF-- 571

Query: 587 EANTIVYDEILIEHMKKKTADLVLSGLKFF 616
             + + ++ ++  + K    D    GL+ F
Sbjct: 572 SPDVVTFNTLVSGYCKAGRVD---DGLELF 598



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 94/441 (21%), Positives = 194/441 (43%), Gaps = 79/441 (17%)

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
           ++ + +KM R     DV+++  +I+   +   L   L  + ++ K   + DV+ + TL+ 
Sbjct: 96  VISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLH 155

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC   RV    +LF +M    ++     +  L+ GL  EG+V +A  LL  +V+ G + 
Sbjct: 156 GLCVEDRVSEALDLFHQMCRPNVV----TFTTLMNGLCREGRVVEAVALLDRMVEDGLQP 211

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           +   Y +I+ G+C++                       TV+ L           N  + +
Sbjct: 212 NQITYGTIVDGMCKIGD---------------------TVSAL-----------NLLRKM 239

Query: 367 AQMEKLKFSV---AADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGAL 422
            +M  +K +V   +A ++  +     K+ R   A +++ E++ KG +  +  YN ++   
Sbjct: 240 EEMSHIKPNVVIYSAIIDGLW-----KDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGF 294

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
              G   +A  L  +M    +  N +++S  I  +V+     EA E +++++    +P+ 
Sbjct: 295 CSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNT 354

Query: 483 AAYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVAS---------------GPTEFKYA 522
             YN +  G CK   +DAA     +M  + C  +V +                 TE  + 
Sbjct: 355 ITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHE 414

Query: 523 L-------------TILH-VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
           +             T++H  C  G+    +++  +M   G  P+ V C+ ++ G+C +G 
Sbjct: 415 MTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGK 474

Query: 569 LEEARKVFTNLRERKLLTEAN 589
           L++A ++F  +++ K+  +A+
Sbjct: 475 LKDALEMFKAMQKSKMDLDAS 495



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 9/203 (4%)

Query: 397 ALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A+D+F ++ + +   SV  +N LMG ++ +      + L+ KM    +  +  SF+I I+
Sbjct: 61  AIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIK 120

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-CLGNVAS 514
           C      +  A     KI ++   P V  ++ L  GLC    +  A+ L    C  NV +
Sbjct: 121 CFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCRPNVVT 180

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
                 +   +  +CR G   + + +L+ M ++G  PN++    I+ GMCK G    A  
Sbjct: 181 ------FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALN 234

Query: 575 VFTNLRERKLLTEANTIVYDEIL 597
           +   + E   + + N ++Y  I+
Sbjct: 235 LLRKMEEMSHI-KPNVVIYSAII 256



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 89/207 (42%), Gaps = 14/207 (6%)

Query: 181 QGRIAEMLEILEKMRR-----------NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
            G++ + LE+ + M++           N  +PDV  Y  +I  L  E        +++EM
Sbjct: 472 NGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEM 531

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
               +  + + Y ++I GLCK  R+    ++F  M       D   +  L+ G    G+V
Sbjct: 532 PHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRV 591

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
               +L  ++   G  AD   Y ++I G  +V   + A  +F+  +   + PD  T+  +
Sbjct: 592 DDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSM 651

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           L     +   +   + +A +E L+ S+
Sbjct: 652 LTV---LWSKEELKRAVAMLEDLQMSM 675


>gi|255661036|gb|ACU25687.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 376

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 153/329 (46%), Gaps = 2/329 (0%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI +  ++ E M R     +V ++  M+R L     +D  + +WE MKK     D + Y
Sbjct: 39  GRIKDCFDLWELMGRK-GSQNVVSFNIMMRGLFDNGEVDKAISIWELMKKSGFVEDSITY 97

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I G CK G + +   +    +  G ++D   Y  +I GL  E K+ KA  +L  ++ 
Sbjct: 98  GIIIDGFCKNGYINKSLHVLEIAEGKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIK 157

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           SG + +  +YN++I G     +FD A ++F      D +P   T + L+    +  R   
Sbjct: 158 SGCKPNAHVYNTLINGFVGASKFDDAIRVFREMGSMDCSPTIVTYHTLINGLCKGERFSE 217

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
            + L+ +M +  +             + +  ++ MAL ++ ++  KG+   V ++NIL+ 
Sbjct: 218 AYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVLSKGFKPDVQMHNILIH 277

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L  +G+ + AL L+  M   N   N ++ +  ++   + GDI  A     +I+     P
Sbjct: 278 GLCSVGKTQHALMLYFDMNHWNCAPNLVTHNTLMEGFYKDGDIRNALVIWARILRSGLQP 337

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
            + +YN   KGLC    I  A++ + D L
Sbjct: 338 DIISYNITLKGLCSCNRISFAILFLHDAL 366



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 107/245 (43%), Gaps = 19/245 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           K+ G+  +  +Y  +     +N     +  V E+ + +G                   ++
Sbjct: 86  KKSGFVEDSITYGIIIDGFCKNGYINKSLHVLEIAEGKGGVLDAFAYSAMINGLCKEAKL 145

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            + + +L  M ++ CKP+   Y  +I         D  +RV+ EM        ++ Y TL
Sbjct: 146 DKAVSVLNGMIKSGCKPNAHVYNTLINGFVGASKFDDAIRVFREMGSMDCSPTIVTYHTL 205

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLCKG R    ++L +EM E G       Y +L++GL    KV  A  L   ++  G+
Sbjct: 206 INGLCKGERFSEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVLSKGF 265

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           + D+ ++N +I GLC V +   A  L+      + AP+  T N L+    + G + N   
Sbjct: 266 KPDVQMHNILIHGLCSVGKTQHALMLYFDMNHWNCAPNLVTHNTLMEGFYKDGDIRNALV 325

Query: 365 LLAQM 369
           + A++
Sbjct: 326 IWARI 330



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 111/236 (47%), Gaps = 17/236 (7%)

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSV 412
           E G +D   ++  +M + K  V+ D   +   L+G  +  RI    D++E +  KG  +V
Sbjct: 2   ESGDIDGAKRVYMEMAESK--VSPDAVVYNAMLIGFLRVGRIKDCFDLWELMGRKGSQNV 59

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             +NI+M  L + GEV KA+ ++  M+      +S+++ I I    ++G I ++      
Sbjct: 60  VSFNIMMRGLFDNGEVDKAISIWELMKKSGFVEDSITYGIIIDGFCKNGYINKSLH---- 115

Query: 473 IIEMSQ----VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTIL 526
           ++E+++    V    AY+ +  GLCK  ++D A+ ++    G + SG  P    Y   I 
Sbjct: 116 VLEIAEGKGGVLDAFAYSAMINGLCKEAKLDKAVSVLN---GMIKSGCKPNAHVYNTLIN 172

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
               + + +  I V  EM    C P  V    +I+G+CK     EA  +   + E+
Sbjct: 173 GFVGASKFDDAIRVFREMGSMDCSPTIVTYHTLINGLCKGERFSEAYDLVKEMLEK 228



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/265 (20%), Positives = 115/265 (43%), Gaps = 3/265 (1%)

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C     D A +++    +  ++PD    N +L+    +GR+ + F L   M +       
Sbjct: 1   CESGDIDGAKRVYMEMAESKVSPDAVVYNAMLIGFLRVGRIKDCFDLWELMGRKGSQNVV 60

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGK 437
                   L    E +  A+ ++E +K  G+    I Y I++    + G + K+L++   
Sbjct: 61  SFNIMMRGLFDNGE-VDKAISIWELMKKSGFVEDSITYGIIIDGFCKNGYINKSLHVLEI 119

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
             G    +++ ++S  I    +   + +A    N +I+    P+   YN L  G     +
Sbjct: 120 AEGKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNTLINGFVGASK 179

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
            D A+ + R+ +G++   PT   Y   I  +C+     +  +++ EM ++G  P  +  S
Sbjct: 180 FDDAIRVFRE-MGSMDCSPTIVTYHTLINGLCKGERFSEAYDLVKEMLEKGWKPCVITYS 238

Query: 558 AIISGMCKHGTLEEARKVFTNLRER 582
            ++ G+C+   +E A +++  +  +
Sbjct: 239 LLMKGLCQGHKVEMALQLWNQVLSK 263



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 91/194 (46%), Gaps = 13/194 (6%)

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           +YN ++   L +G +K    L+ ++ G     N +SF+I ++   ++G++ +A      +
Sbjct: 27  VYNAMLIGFLRVGRIKDCFDLW-ELMGRKGSQNVVSFNIMMRGLFDNGEVDKAISIWELM 85

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP----TEFKYALTILHVC 529
            +   V     Y  +  G CK G I+ ++ ++      +A G       F Y+  I  +C
Sbjct: 86  KKSGFVEDSITYGIIIDGFCKNGYINKSLHVLE-----IAEGKGGVLDAFAYSAMINGLC 140

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           +  + +K + VLN M + GC PN  + + +I+G       ++A +VF   RE   +  + 
Sbjct: 141 KEAKLDKAVSVLNGMIKSGCKPNAHVYNTLINGFVGASKFDDAIRVF---REMGSMDCSP 197

Query: 590 TIVYDEILIEHMKK 603
           TIV    LI  + K
Sbjct: 198 TIVTYHTLINGLCK 211



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 130/299 (43%), Gaps = 7/299 (2%)

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
            G +  A  +  ++ +S    D  +YN+++ G  RV +    + L+E+  +   + +  +
Sbjct: 3   SGDIDGAKRVYMEMAESKVSPDAVVYNAMLIGFLRVGRIKDCFDLWELMGRKG-SQNVVS 61

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE 403
            N ++    + G +D    +   M+K  F    D   +   + G  K   I  +L V E 
Sbjct: 62  FNIMMRGLFDNGEVDKAISIWELMKKSGF--VEDSITYGIIIDGFCKNGYINKSLHVLEI 119

Query: 404 LKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
            +GKG       Y+ ++  L +  ++ KA+ +   M     + N+  ++  I   V +  
Sbjct: 120 AEGKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNTLINGFVGASK 179

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
             +A     ++  M   P++  Y+ L  GLCK      A  LV++ L      P    Y+
Sbjct: 180 FDDAIRVFREMGSMDCSPTIVTYHTLINGLCKGERFSEAYDLVKEMLEK-GWKPCVITYS 238

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           L +  +C+  + E  +++ N++  +G  P+  + + +I G+C  G  + A  ++ ++  
Sbjct: 239 LLMKGLCQGHKVEMALQLWNQVLSKGFKPDVQMHNILIHGLCSVGKTQHALMLYFDMNH 297



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 71/163 (43%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R +E  +++++M     KP V  Y+ +++ L     ++  L++W ++     + DV  + 
Sbjct: 214 RFSEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVLSKGFKPDVQMHN 273

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI GLC  G+      L+ +M       +   +  L+EG   +G +  A  +   ++ S
Sbjct: 274 ILIHGLCSVGKTQHALMLYFDMNHWNCAPNLVTHNTLMEGFYKDGDIRNALVIWARILRS 333

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           G + D+  YN  + GLC   +   A       +   + P   T
Sbjct: 334 GLQPDIISYNITLKGLCSCNRISFAILFLHDALTKKIFPTIIT 376


>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
 gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 115/467 (24%), Positives = 215/467 (46%), Gaps = 27/467 (5%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKM 194
           A  F  W  K+ G+K +  SY+ +      N+L +A           G++ + LE+ ++M
Sbjct: 168 ARGFLDWMWKE-GFKPDVFSYSTVI-----NDLAKA-----------GKLDDALELFDEM 210

Query: 195 RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMAYVTLIMGLCKGGR 253
                 PDV  Y  +I     E++    + +W+ + +D  V  +V  +  +I GL K GR
Sbjct: 211 SERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGR 270

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           V    +++  MK+N    D   Y  LI GL   G V KA  +  +L +     D+  YN+
Sbjct: 271 VDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNT 330

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           ++GG CR  +  ++ +L+ +    + + +  + N L+    E G++D    +   M    
Sbjct: 331 MLGGFCRCGKIKESLELWRIMEHKN-SVNIVSYNILIKGLLENGKIDEATMIWRLMPAKG 389

Query: 374 FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGK-GYSSVPIYNILMGALLEIGEVKK 430
           +  AAD   +  F+ G      +  AL V +E++   G+  V  Y  ++  L +   +++
Sbjct: 390 Y--AADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEE 447

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A  L  +M    +E+NS   +  I   +    + EA     ++ +    P+V +YN L  
Sbjct: 448 ASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILIC 507

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           GLCK G+   A   V++ L N    P    Y++ +  +CR  + +  +E+ ++  Q G  
Sbjct: 508 GLCKAGKFGEASAFVKEMLEN-GWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLE 566

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            + ++ + +I G+C  G L++A  V  N+  R     AN + Y+ ++
Sbjct: 567 TDVMMHNILIHGLCSVGKLDDAMTVMANMEHRN--CTANLVTYNTLM 611



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 133/571 (23%), Positives = 240/571 (42%), Gaps = 70/571 (12%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           + ++P  V ++LK E NP  A   F  A +  GY H+   Y+ +   LS   +     ++
Sbjct: 6   KSLSPKHVLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRI 65

Query: 175 PELMDSQ----------------GRIA---EMLEILEKMRRNL-CKPDV----------- 203
            EL+ SQ                G+ +   + L++ ++MR    C+P +           
Sbjct: 66  VELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFV 125

Query: 204 -----------FAY-------------TAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
                      FAY               +I++   ++  +      + M K+  + DV 
Sbjct: 126 EAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVF 185

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y T+I  L K G++    ELF EM E G+  D   Y +LI+G + E     A +L   L
Sbjct: 186 SYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRL 245

Query: 300 V-DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           + DS    ++  +N +I GL +  + D   K++E   Q++   D  T + L+    + G 
Sbjct: 246 LEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGN 305

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIYN 416
           +D    +  ++++ K S+  D+  +   L G  +  +I  +L+++  ++ K   ++  YN
Sbjct: 306 VDKAESVFNELDERKASI--DVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIVSYN 363

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+  LLE G++ +A  ++  M       +  ++ I I     +G + +A     ++   
Sbjct: 364 ILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESS 423

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT--ILHVCRSGEA 534
                V AY  +   LCK   ++ A  LV++   +     +    AL   ++   R GEA
Sbjct: 424 GGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEA 483

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
                 L EM + GC P  V  + +I G+CK G   EA      + E     +  T  Y 
Sbjct: 484 SFF---LREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKT--YS 538

Query: 595 EILIEHMKKKTADLVLSGLKFF---GLESKL 622
            +L    + +  DL L     F   GLE+ +
Sbjct: 539 ILLCGLCRDRKIDLALELWHQFLQSGLETDV 569



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 188/417 (45%), Gaps = 17/417 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + L+I E+M++N  + D++ Y+++I  L    N+D    V+ E+ +     DV+ Y
Sbjct: 269 GRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTY 328

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T++ G C+ G++    EL+R M E+   ++   Y +LI+GL+  GK+ +A  + + +  
Sbjct: 329 NTMLGGFCRCGKIKESLELWRIM-EHKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPA 387

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            GY AD   Y   I GLC     +KA  + +         D      ++ C  +  R++ 
Sbjct: 388 KGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEE 447

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
              L+ +M K    + + +       + ++ R+  A     E+   G   +V  YNIL+ 
Sbjct: 448 ASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILIC 507

Query: 421 ALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
            L + G+  +A     +M   G   ++ + S  +   C     D+  A E  ++ ++   
Sbjct: 508 GLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDL--ALELWHQFLQSGL 565

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLV-----RDCLGNVASGPTEFKYALTILHVCRSGE 533
              V  +N L  GLC +G++D AM ++     R+C  N+ +      Y   +    + G+
Sbjct: 566 ETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVT------YNTLMEGFFKVGD 619

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           + +   +   M + G  P+ +  + I+ G+C    +  A + F + R   +     T
Sbjct: 620 SNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYT 676



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 77/169 (45%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  E    +++M  N  KPD+  Y+ ++  L  +R +D  L +W +  +  +E DVM +
Sbjct: 513 GKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMH 572

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GLC  G++     +   M+      +   Y  L+EG    G   +A  +   +  
Sbjct: 573 NILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYK 632

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            G + D+  YN+I+ GLC  +    A + F+      + P   T N L+
Sbjct: 633 MGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNILV 681



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 24/300 (8%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAE 186
           KGY  +  +Y    + L  N     A  V + ++S G                   R+ E
Sbjct: 388 KGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEE 447

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
              ++++M ++  + +     A+I  L  +  L        EM K+     V++Y  LI 
Sbjct: 448 ASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILIC 507

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLCK G+        +EM ENG   D   Y +L+ GL  + K+  A +L    + SG   
Sbjct: 508 GLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLET 567

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D+ ++N +I GLC V + D A  +       +   +  T N L+    ++G  +    + 
Sbjct: 568 DVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIW 627

Query: 367 AQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
             M K+   +  D+  +   + G      +  A++ F++ +  G + +V  +NIL+ A++
Sbjct: 628 GYMYKM--GLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNILVRAVV 685


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 206/448 (45%), Gaps = 25/448 (5%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R++E L++  +    +C+PDV  +T ++  L  E  +   + + + M ++ ++ D + Y 
Sbjct: 166 RVSEALDLFHQ----ICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYG 221

Query: 243 TLIMGLCKGGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
           T + G+CK G  V    L R+M+E + I  +  IY  +I+GL  +G+   + +L  ++ D
Sbjct: 222 TFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQD 281

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++  YN +IGG C   ++  A +L +  ++  ++P+  T N L+    + G+   
Sbjct: 282 KGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFE 341

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
             +L  +M  L   +  +   +   + G  K++R+  A D+F  +  KG S  V  +  L
Sbjct: 342 AAELYDEM--LPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTL 399

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +        +   + L  +M    L  N+++++  I      GD+  A +   ++I    
Sbjct: 400 IDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGV 459

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDC----LGNVASGPTE------FKYALTILHV 528
            P +   N L  GLC  G++  A+ + +      +   AS P          Y + I  +
Sbjct: 460 CPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGL 519

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
              G+  +  E+  EM   G  P+ +  S++I G+CK   L+EA ++F ++  +      
Sbjct: 520 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSF--SP 577

Query: 589 NTIVYDEILIEHMKKKTADLVLSGLKFF 616
           N + ++ ++  + K    D    GL+ F
Sbjct: 578 NVVTFNTLINGYCKAGRVD---DGLELF 602



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/463 (23%), Positives = 202/463 (43%), Gaps = 57/463 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK-DLVEADVM 239
           +GR+ E + +L++M  N  +PD   Y   +  +    +  + L +  +M++   ++ +V+
Sbjct: 195 EGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVV 254

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGI-----------------------------L 270
            Y  +I GLCK GR    H LF EM++ GI                             +
Sbjct: 255 IYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEM 314

Query: 271 IDRAI------YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           ++R I      Y  LI   V EGK  +A +L  +++  G   +   YNS+I G C+  + 
Sbjct: 315 LERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRL 374

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK---LKFSVAADLE 381
           D A  +F +      +PD  T   L+       R+D+  +LL +M +   +  +V  +  
Sbjct: 375 DAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTL 434

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
                LVG    +  ALD+ +++   G    +   N L+  L + G++K AL +F  M+ 
Sbjct: 435 IHGFCLVGD---LNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQK 491

Query: 441 LNLEVNS-----------LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
             +++++           L+++I I   +  G  LEA E + ++     VP    Y+ + 
Sbjct: 492 SKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 551

Query: 490 KGLCKIGEID-AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
            GLCK   +D A  M V   +G+ +  P    +   I   C++G  +  +E+  EM + G
Sbjct: 552 DGLCKQSRLDEATQMFVS--MGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRG 609

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
              + +I   +I G  K G +  A  +F  +    +  +  TI
Sbjct: 610 IVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITI 652



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 99/446 (22%), Positives = 177/446 (39%), Gaps = 44/446 (9%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           + KG   N  +YN +   +C+S                  GR +    +L++M      P
Sbjct: 280 QDKGIFPNIVTYNCMIGGFCIS------------------GRWSAAQRLLQEMLERKISP 321

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +V  Y A+I     E        +++EM    +  + + Y ++I G CK  R+    ++F
Sbjct: 322 NVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMF 381

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             M   G   D   +  LI+G  G  ++    +LL ++   G  A+   YN++I G C V
Sbjct: 382 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 441

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
              + A  L +  +   + PD  T N LL    + G++ +  ++   M+K K        
Sbjct: 442 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSK-------- 493

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
                         M LD      G     V  YNIL+  L+  G+  +A  L+ +M   
Sbjct: 494 --------------MDLDASHPFNGV-EPDVLTYNILICGLINEGKFLEAEELYEEMPHR 538

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            +  +++++S  I    +   + EA +    +   S  P+V  +N L  G CK G +D  
Sbjct: 539 GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDG 598

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           + L  + +G          Y   I    + G     +++  EM   G  P+ +    +++
Sbjct: 599 LELFCE-MGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLT 657

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTE 587
           G      LE A  +  +L+  +L  E
Sbjct: 658 GFWSKEELERAVAMLEDLQRYQLEDE 683



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/440 (21%), Positives = 191/440 (43%), Gaps = 77/440 (17%)

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
           ++ + +KM R   + D++++T +I+   +   L   L  + ++ K  +  DV+ + TL+ 
Sbjct: 100 VISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLH 159

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC   RV    +LF ++    +L     +  L+ GL  EG+V +A  LL  +V++G + 
Sbjct: 160 GLCLDHRVSEALDLFHQICRPDVL----TFTTLMNGLCREGRVVEAVALLDRMVENGLQP 215

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D   Y + + G+C+                                   MG   +   LL
Sbjct: 216 DQITYGTFVDGMCK-----------------------------------MGDTVSALNLL 240

Query: 367 AQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
            +ME++   +  ++  +   + G  K+ R   + ++F E++ KG + ++  YN ++G   
Sbjct: 241 RKMEEIS-HIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFC 299

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
             G    A  L  +M    +  N ++++  I   V+ G   EA E +++++    +P+  
Sbjct: 300 ISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTI 359

Query: 484 AYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVAS---------GPTEFKYALTILH-- 527
            YN +  G CK   +DAA     +M  + C  +V +         G       + +LH  
Sbjct: 360 TYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEM 419

Query: 528 ------------------VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
                              C  G+    +++  +M   G  P+ V C+ ++ G+C +G L
Sbjct: 420 PRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 479

Query: 570 EEARKVFTNLRERKLLTEAN 589
           ++A ++F  +++ K+  +A+
Sbjct: 480 KDALEMFKAMQKSKMDLDAS 499



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 7/202 (3%)

Query: 397 ALDVFEE-LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A+D+F + L+ +   SV  +N LMGA++ +      + L+ KM    +  +  SF+I I+
Sbjct: 65  AIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIK 124

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
           C      +  A     K+ ++   P V  +  L  GLC    +  A+ L           
Sbjct: 125 CFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQ-----ICR 179

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    +   +  +CR G   + + +L+ M + G  P+++     + GMCK G    A  +
Sbjct: 180 PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNL 239

Query: 576 FTNLRERKLLTEANTIVYDEIL 597
              + E   + + N ++Y  I+
Sbjct: 240 LRKMEEISHI-KPNVVIYSAII 260


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/458 (21%), Positives = 194/458 (42%), Gaps = 35/458 (7%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR  E L +L  M R+ C PD   Y  +I  L  +  +     +  EM      ADV  +
Sbjct: 173 GRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTF 232

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL------------------ 283
             ++ G+C  GRV     L   M   G +     YG L++GL                  
Sbjct: 233 DDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPE 292

Query: 284 -------------VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
                        + EGK+ +A +L + +   G + D   Y+ ++ GLC++ +   A +L
Sbjct: 293 LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRL 352

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK 390
                +   AP+  T   +L    + G  D+   LL +M     ++ +       + + K
Sbjct: 353 LREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCK 412

Query: 391 EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
           + R+  A+ + +E++ +G +  +  YN ++  L    ++++A ++F  +    +  N ++
Sbjct: 413 DGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGIT 472

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           ++  I   +  G   +A     ++I       V +YN L K +CK G +D +++L+ + +
Sbjct: 473 YNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE-M 531

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
                 P    Y + I  +C+       +E+  +M  +G  P+ V  + +I+G+CK G +
Sbjct: 532 AEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWM 591

Query: 570 EEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
             A  +   L    +    + I Y+ ++  H K +  D
Sbjct: 592 HAALNLLEKLHNENV--HPDIITYNILISWHCKVRLLD 627



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 164/371 (44%), Gaps = 35/371 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G++AE  E+ E M    C+PD   Y+ ++  L     + + +R+  EM+K     +V+
Sbjct: 307 AEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVV 366

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  ++   CK G       L  EM   G+ ++   Y  +I  L  +G++ +A  L++++
Sbjct: 367 TYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEM 426

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   D+  YN+II  LC  +Q ++A  +FE  +++ +  +  T N ++      GR 
Sbjct: 427 RSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRW 486

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
            +  +L  +M                 L G       +LDV              YN L+
Sbjct: 487 QDAVRLAKEM----------------ILHG------CSLDVVS------------YNGLI 512

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            A+ + G V ++L L  +M    ++ N++S++I I    +   + +A E   +++     
Sbjct: 513 KAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLA 572

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P +  YN L  GLCK+G + AA+ L+   L N    P    Y + I   C+    +    
Sbjct: 573 PDIVTYNTLINGLCKMGWMHAALNLLEK-LHNENVHPDIITYNILISWHCKVRLLDDAAM 631

Query: 540 VLNEMTQEGCP 550
           +LN      CP
Sbjct: 632 LLNRAMAAVCP 642



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 107/225 (47%), Gaps = 16/225 (7%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           KG   N   YN + Y L ++                GR+ E + ++++MR   C PD+ +
Sbjct: 394 KGLTLNSQGYNGMIYALCKD----------------GRMDEAMGLIQEMRSQGCNPDICS 437

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  +I  L     ++    ++E + ++ V A+ + Y T+I  L + GR      L +EM 
Sbjct: 438 YNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMI 497

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
            +G  +D   Y  LI+ +  +G V ++  LL+++ + G + +   YN +I  LC+ ++  
Sbjct: 498 LHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVR 557

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
            A +L +  +   LAPD  T N L+    +MG M     LL ++ 
Sbjct: 558 DALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLH 602



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 88/230 (38%), Gaps = 41/230 (17%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPE-------------------LMDSQGRIA 185
           ++G   N  +YN + + L R+  ++ A ++ +                    M   G + 
Sbjct: 463 EEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVD 522

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
             L +LE+M     KP+  +Y  +I  L  ER +   L + ++M    +  D++ Y TLI
Sbjct: 523 RSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLI 582

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLCK G +     L  ++    +  D   Y +LI        +  A  LL         
Sbjct: 583 NGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLL--------- 633

Query: 306 ADLGIYNSIIGGLC-----RVKQF--DKAYKLFEVTVQDDLAPDFSTVNP 348
                 N  +  +C     R+ Q   DK +KL+  T  DD       V P
Sbjct: 634 ------NRAMAAVCPVGDRRIMQILPDKNFKLYLHTKGDDFQHSLGCVKP 677


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 206/448 (45%), Gaps = 25/448 (5%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R++E L++  +    +C+PDV  +T ++  L  E  +   + + + M ++ ++ D + Y 
Sbjct: 166 RVSEALDLFHQ----ICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYG 221

Query: 243 TLIMGLCKGGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
           T + G+CK G  V    L R+M+E + I  +  IY  +I+GL  +G+   + +L  ++ D
Sbjct: 222 TFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQD 281

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++  YN +IGG C   ++  A +L +  ++  ++P+  T N L+    + G+   
Sbjct: 282 KGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFE 341

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
             +L  +M  L   +  +   +   + G  K++R+  A D+F  +  KG S  V  +  L
Sbjct: 342 AAELYDEM--LPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTL 399

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +        +   + L  +M    L  N+++++  I      GD+  A +   ++I    
Sbjct: 400 IDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGV 459

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDC----LGNVASGPTE------FKYALTILHV 528
            P +   N L  GLC  G++  A+ + +      +   AS P          Y + I  +
Sbjct: 460 CPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGL 519

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
              G+  +  E+  EM   G  P+ +  S++I G+CK   L+EA ++F ++  +      
Sbjct: 520 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSF--SP 577

Query: 589 NTIVYDEILIEHMKKKTADLVLSGLKFF 616
           N + ++ ++  + K    D    GL+ F
Sbjct: 578 NVVTFNTLINGYCKAGRVD---DGLELF 602



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/463 (23%), Positives = 202/463 (43%), Gaps = 57/463 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK-DLVEADVM 239
           +GR+ E + +L++M  N  +PD   Y   +  +    +  + L +  +M++   ++ +V+
Sbjct: 195 EGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVV 254

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGI-----------------------------L 270
            Y  +I GLCK GR    H LF EM++ GI                             +
Sbjct: 255 IYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEM 314

Query: 271 IDRAI------YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           ++R I      Y  LI   V EGK  +A +L  +++  G   +   YNS+I G C+  + 
Sbjct: 315 LERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRL 374

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK---LKFSVAADLE 381
           D A  +F +      +PD  T   L+       R+D+  +LL +M +   +  +V  +  
Sbjct: 375 DAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTL 434

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
                LVG    +  ALD+ +++   G    +   N L+  L + G++K AL +F  M+ 
Sbjct: 435 IHGFCLVGD---LNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQK 491

Query: 441 LNLEVNS-----------LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
             +++++           L+++I I   +  G  LEA E + ++     VP    Y+ + 
Sbjct: 492 SKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 551

Query: 490 KGLCKIGEID-AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
            GLCK   +D A  M V   +G+ +  P    +   I   C++G  +  +E+  EM + G
Sbjct: 552 DGLCKQSRLDEATQMFVS--MGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRG 609

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
              + +I   +I G  K G +  A  +F  +    +  +  TI
Sbjct: 610 IVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITI 652



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/440 (21%), Positives = 191/440 (43%), Gaps = 77/440 (17%)

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
           ++ + +KM R   + D++++T +I+   +   L   L  + ++ K  +  DV+ + TL+ 
Sbjct: 100 VISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLH 159

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC   RV    +LF ++    +L     +  L+ GL  EG+V +A  LL  +V++G + 
Sbjct: 160 GLCLDHRVSEALDLFHQICRPDVL----TFTTLMNGLCREGRVVEAVALLDRMVENGLQP 215

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D   Y + + G+C+                                   MG   +   LL
Sbjct: 216 DQITYGTFVDGMCK-----------------------------------MGDTVSALNLL 240

Query: 367 AQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
            +ME++   +  ++  +   + G  K+ R   + ++F E++ KG + ++  YN ++G   
Sbjct: 241 RKMEEIS-HIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFC 299

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
             G    A  L  +M    +  N ++++  I   V+ G   EA E +++++    +P+  
Sbjct: 300 ISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTI 359

Query: 484 AYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVAS---------GPTEFKYALTILH-- 527
            YN +  G CK   +DAA     +M  + C  +V +         G       + +LH  
Sbjct: 360 TYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEM 419

Query: 528 ------------------VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
                              C  G+    +++  +M   G  P+ V C+ ++ G+C +G L
Sbjct: 420 PRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 479

Query: 570 EEARKVFTNLRERKLLTEAN 589
           ++A ++F  +++ K+  +A+
Sbjct: 480 KDALEMFKAMQKSKMDLDAS 499



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/439 (22%), Positives = 174/439 (39%), Gaps = 44/439 (10%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           + KG   N  +YN +   +C+S                  GR +    +L++M      P
Sbjct: 280 QDKGIFPNIVTYNCMIGGFCIS------------------GRWSAAQRLLQEMLERKISP 321

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +V  Y A+I     E        +++EM    +  + + Y ++I G CK  R+    ++F
Sbjct: 322 NVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMF 381

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             M   G   D   +  LI+G  G  ++    +LL ++   G  A+   YN++I G C V
Sbjct: 382 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 441

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
              + A  L +  +   + PD  T N LL    + G++ +  ++   M+K K        
Sbjct: 442 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSK-------- 493

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
                         M LD      G     V  YNIL+  L+  G+  +A  L+ +M   
Sbjct: 494 --------------MDLDASHPFNGV-EPDVLTYNILICGLINEGKFLEAEELYEEMPHR 538

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            +  +++++S  I    +   + EA +    +   S  P+V  +N L  G CK G +D  
Sbjct: 539 GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDG 598

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           + L  + +G          Y   I    + G     +++  EM   G  P+ +    +++
Sbjct: 599 LELFCE-MGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLT 657

Query: 562 GMCKHGTLEEARKVFTNLR 580
           G      LE A  +  +L+
Sbjct: 658 GFWSKEELERAVAMLEDLQ 676



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 110/268 (41%), Gaps = 35/268 (13%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDS------------------QGRI 184
           ++G   N  +YN L   +CL   +L  A D   +++ S                   G++
Sbjct: 421 RRGLVANTVTYNTLIHGFCLV-GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 479

Query: 185 AEMLEILEKMRR-----------NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
            + LE+ + M++           N  +PDV  Y  +I  L  E        ++EEM    
Sbjct: 480 KDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRG 539

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  D + Y ++I GLCK  R+    ++F  M       +   +  LI G    G+V    
Sbjct: 540 IVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGL 599

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           +L  ++   G  AD  IY ++I G  +V   + A  +F+  +   + PD  T+  +L   
Sbjct: 600 ELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNML--- 656

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLE 381
                 +   + +A +E L+ SV   LE
Sbjct: 657 TGFWSKEELERAVAMLEDLQMSVGYQLE 684



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 7/202 (3%)

Query: 397 ALDVFEE-LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A+D+F + L+ +   SV  +N LMGA++ +      + L+ KM    +  +  SF+I I+
Sbjct: 65  AIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIK 124

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
           C      +  A     K+ ++   P V  +  L  GLC    +  A+ L           
Sbjct: 125 CFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQ-----ICR 179

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    +   +  +CR G   + + +L+ M + G  P+++     + GMCK G    A  +
Sbjct: 180 PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNL 239

Query: 576 FTNLRERKLLTEANTIVYDEIL 597
              + E   + + N ++Y  I+
Sbjct: 240 LRKMEEISHI-KPNVVIYSAII 260


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 181/388 (46%), Gaps = 10/388 (2%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+V  +  +I+ +     +D  ++V+ +M     E DV  Y TL+ GLCK  R+     L
Sbjct: 197 PNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSL 256

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             EM+ +G       + VLI GL  +G + +A  L+ ++   G   +   YN++I GLC 
Sbjct: 257 LDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCL 316

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             + +KA  L +  V     P+  T   ++    + GR  +   +LA ME+  + V    
Sbjct: 317 KGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVN--- 373

Query: 381 EKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
           E  +  L+    KE +   A+ +F+E+  KGY  +  +Y+ ++  L   G+   A+ +  
Sbjct: 374 EYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLS 433

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M       N+ + S  ++   E+G+   A E    + + +   +   Y+ L  GLCK G
Sbjct: 434 EMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDG 493

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG--CPPNEV 554
           ++  AMM+    LG     P    Y+  I  +  +G  E  +++ NEM  +G    P+ V
Sbjct: 494 KVKEAMMVWTQMLGK-GCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVV 552

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRER 582
             + +++ +CK  ++  A  +  ++ +R
Sbjct: 553 TYNILLNTLCKQSSISRAIDLLNSMLDR 580



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 102/505 (20%), Positives = 227/505 (44%), Gaps = 30/505 (5%)

Query: 128 VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIA-- 185
           +E +P ++ K F    K   Y+   +++ +L    +    F++ ++V + M  + R+   
Sbjct: 66  IEPDPPISDKIFKSGPKMGSYRLGDSTFYSLINNYANLGDFKSLEKVLDRMKCEKRVIFE 125

Query: 186 -----------------EMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRVWE 227
                            + +++ ++M     CK    ++ +++ V+  E      L  + 
Sbjct: 126 KCFIVIFKAYGKAHLPEKAVDLFDRMACEFECKRTGKSFNSVLNVIIQEGLFHRALEFYN 185

Query: 228 EM---KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
            +   K   +  +V+ +  +I  +CK G V    ++FR+M       D   Y  L++GL 
Sbjct: 186 HVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLC 245

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
              ++ +A  LL ++   G       +N +I GLC+     +A KL +        P+  
Sbjct: 246 KADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEV 305

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFE 402
           T N L+      G+++    LL +M   K     ++  +   + G  K+ R +    V  
Sbjct: 306 TYNTLIHGLCLKGKLEKAISLLDRMVSSK--CVPNVVTYGTIINGLVKQGRALDGACVLA 363

Query: 403 ELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
            ++ +GY  +  +Y+ L+  L + G+ ++A++LF +M     E+N++ +S  I      G
Sbjct: 364 LMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDG 423

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
              +A E  +++      P+    + L KG  + G    A+ + +D +        E  Y
Sbjct: 424 KPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKD-MAKHNFTQNEVCY 482

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           ++ I  +C+ G+ ++ + V  +M  +GC P+ V  S++I+G+   G +E+A +++  +  
Sbjct: 483 SVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLC 542

Query: 582 RKLLTEANTIVYDEILIEHMKKKTA 606
           +   ++ + + Y+ IL+  + K+++
Sbjct: 543 QGPDSQPDVVTYN-ILLNTLCKQSS 566



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 179/411 (43%), Gaps = 64/411 (15%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G ++   ++++ M    C P+   Y  +I  L  +  L+  + + + M       +V+ 
Sbjct: 282 KGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVT 341

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I GL K GR + G  +   M+E G  ++  +Y  LI GL  EGK  +A  L K++ 
Sbjct: 342 YGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMT 401

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             GY  +  +Y+++I GLCR  + D A ++          P+  T + L           
Sbjct: 402 VKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSL----------- 450

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILM 419
                              ++ FFE   G   R   A++V++++    ++   + Y++L+
Sbjct: 451 -------------------MKGFFE--AGNSHR---AVEVWKDMAKHNFTQNEVCYSVLI 486

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM--S 477
             L + G+VK+A+ ++ +M G   + + +++S  I     +G + +A + +N+++     
Sbjct: 487 HGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPD 546

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPT--------------- 517
             P V  YN L   LCK   I  A+     ML R C  ++ +                  
Sbjct: 547 SQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFLRMLREKLDPPQDG 606

Query: 518 -EF--KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
            EF  +  + +L   R   A KI+EV   M Q+  PP     + ++  +CK
Sbjct: 607 REFLDELVVRLLKRQRVLGASKIVEV---MLQKLLPPKHSTWARVVENLCK 654


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/425 (23%), Positives = 189/425 (44%), Gaps = 43/425 (10%)

Query: 167 LFRAADQVPELMDSQGRIAEM------LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLD 220
           L R    + E     G + +M      + + ++M     +PD+   + +I        + 
Sbjct: 125 LMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMA 184

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280
               V  ++ K   + + +   TL+ GLC  G V +      ++   G  +++  YG L+
Sbjct: 185 FSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLL 244

Query: 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
            GL   G+   A  LL+ + D   R D+ +YN+II GLC+ K  ++AY  +       + 
Sbjct: 245 NGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIF 304

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400
           PD  T + L+      G++   F LL +M                               
Sbjct: 305 PDVITYSTLICGFCLAGQLMGAFSLLNEM------------------------------T 334

Query: 401 FEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
            + +    Y+    Y IL+ AL + G++K+A  L G M    ++ N +++S  +  +   
Sbjct: 335 LKNINPDVYT----YTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLV 390

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG-NVASGPTEF 519
           G++  A +  + +++    PSV +YN +  GLCK   +D AM L+R+ L  NV   P   
Sbjct: 391 GEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVV--PNTV 448

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            Y   I  +C+SG     ++++ E+   G P + +  ++++ G+CK+  L++A  +F  +
Sbjct: 449 TYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKM 508

Query: 580 RERKL 584
           +ER +
Sbjct: 509 KERGI 513



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 185/416 (44%), Gaps = 22/416 (5%)

Query: 136 SKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMR 195
           S  FH     +G++ N  SY  L   L +    R A ++  +++ +              
Sbjct: 221 SLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRST------------ 268

Query: 196 RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVV 255
               +PDV  Y  +I  L  ++ ++     + EM    +  DV+ Y TLI G C  G+++
Sbjct: 269 ----RPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLM 324

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
               L  EM    I  D   Y +LI+ L  EGK+ +A +LL  +   G + ++  Y++++
Sbjct: 325 GAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLM 384

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            G C V +   A ++F   VQ ++ P   + N ++    +   +D    LL +M  L  +
Sbjct: 385 DGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREM--LHKN 442

Query: 376 VAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKAL 432
           V  +   +   + G  K  RI  ALD+ +EL  +G  + V  Y  L+  L +   + KA+
Sbjct: 443 VVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAI 502

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            LF KM+   ++ N  +++  I    +   +  A +    I+       V  YN +  GL
Sbjct: 503 ALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGL 562

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
           CK G +D A+ + +  + +    P    + + I  +    E +K  ++L+EM  +G
Sbjct: 563 CKEGMLDEALAM-KSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKG 617



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 101/446 (22%), Positives = 193/446 (43%), Gaps = 43/446 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++A    +L K+ +   +P+    T +++ L  +  +   L   +++     + + ++Y
Sbjct: 181 GQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSY 240

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+ GLCK G      +L R +++     D  +Y  +I+GL  +  V +A D   ++  
Sbjct: 241 GTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNS 300

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  Y+++I G C   Q   A+ L       ++ PD  T   L+    + G++  
Sbjct: 301 RGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKE 360

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
              LL  M K                              E +K     +V  Y+ LM  
Sbjct: 361 AKNLLGVMTK------------------------------EGVK----PNVVTYSTLMDG 386

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
              +GEV  A  +F  M    +  +  S++I I    +   + EA     +++  + VP+
Sbjct: 387 YCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPN 446

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
              YN L  GLCK G I +A+ L+++ L +         Y   +  +C++   +K I + 
Sbjct: 447 TVTYNSLIDGLCKSGRITSALDLMKE-LHHRGQPADVITYTSLLDGLCKNQNLDKAIALF 505

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
            +M + G  PN+   +A+I G+CK   L+ A+K+F ++  +    +  T  Y+ ++    
Sbjct: 506 MKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYT--YNVMIGGLC 563

Query: 602 KKKTADLVLSGLKFFGLESKLKAKGC 627
           K+   D  L+      ++SK++  GC
Sbjct: 564 KEGMLDEALA------MKSKMEDNGC 583



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/424 (21%), Positives = 174/424 (41%), Gaps = 38/424 (8%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + + L   +K+     + +  +Y  ++  L         +++   ++      DV+ 
Sbjct: 215 KGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVM 274

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I GLCK   V   ++ + EM   GI  D   Y  LI G    G++  A  LL ++ 
Sbjct: 275 YNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMT 334

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 D+  Y  +I  LC+  +  +A  L  V  ++ + P+  T + L+     +G + 
Sbjct: 335 LKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVH 394

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
           N                   ++ F  +V  E                   SV  YNI++ 
Sbjct: 395 N------------------AKQIFHAMVQTEVN----------------PSVCSYNIMIN 420

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L +   V +A+ L  +M   N+  N+++++  I    +SG I  A +   ++    Q  
Sbjct: 421 GLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPA 480

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  Y  L  GLCK   +D A+ L    +      P ++ Y   I  +C+    +   ++
Sbjct: 481 DVITYTSLLDGLCKNQNLDKAIALFMK-MKERGIQPNKYTYTALIDGLCKGARLKNAQKL 539

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
              +  +GC  +    + +I G+CK G L+EA  + + + +   + +A T    EI+I  
Sbjct: 540 FQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTF---EIIIRS 596

Query: 601 MKKK 604
           + +K
Sbjct: 597 LFEK 600



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 5/218 (2%)

Query: 125 VLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRN---NLFRAADQVPELMDSQ 181
           +++ E NP++ S      G  KG K    + N L   L +N   N       +  L  S 
Sbjct: 403 MVQTEVNPSVCSYNIMINGLCKG-KSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKS- 460

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI   L++++++       DV  YT+++  L   +NLD  + ++ +MK+  ++ +   Y
Sbjct: 461 GRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTY 520

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GLCKG R+    +LF+ +   G  ID   Y V+I GL  EG + +A  +   + D
Sbjct: 521 TALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMED 580

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339
           +G   D   +  II  L    + DKA KL    +   L
Sbjct: 581 NGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 618


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 191/413 (46%), Gaps = 9/413 (2%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L +L +MR     P    +T++I     E N+   LR+ ++M       ++    +L+ G
Sbjct: 95  LSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKG 154

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            C  G +     L  E+ E+G++ ++  Y VLI+G    G + KA +   ++   G R+ 
Sbjct: 155 YCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSS 214

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +   NSI+ G  + + +  A+ +F   ++  LA  F T N LL    + G+M+    L  
Sbjct: 215 VYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVF-TFNTLLSWLCKEGKMNEACNLWD 273

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
             E +   ++ ++  +   ++G  +++ I  A  V++E+   G++ +   + ILM    +
Sbjct: 274 --EVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFK 331

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G+++ A  +F +M+  N+     +  I I+   ++G   E  +  NK +    VP+   
Sbjct: 332 KGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMP 391

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN +  G  K G I+ A  + R+ +  V   P+   Y   I   C+    +  +++LN+M
Sbjct: 392 YNTIIDGFIKEGNINLASNVYRE-MCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDM 450

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            ++G   +      +I G CK   ++ A ++   LR   L    N  +Y+ ++
Sbjct: 451 KRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGL--SPNRFIYNSMI 501



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 103/449 (22%), Positives = 194/449 (43%), Gaps = 16/449 (3%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E  E+  KM       D F    M+R    E N+    + + + K   VE D  AY   +
Sbjct: 23  EARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQHFLQAKARGVELDQEAYSIFV 82

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
             LC          L REM+  G +     +  +I   V EG V +A  L  D+V+ G  
Sbjct: 83  HLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKS 142

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            +L +  S++ G C       A  L     +  L P+  T + L+  C + G ++  F+ 
Sbjct: 143 MNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEF 202

Query: 366 LAQMEKLK-----FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
            ++M+        +S+ + LE +      K +    A  +F +    G ++V  +N L+ 
Sbjct: 203 YSEMKTKGIRSSVYSLNSILEGYL-----KCQSWQNAFTMFNDALESGLANVFTFNTLLS 257

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L + G++ +A  L+ ++    +  N +S++  I  H    +I  AC+ + ++++    P
Sbjct: 258 WLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTP 317

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +   +  L  G  K G+I+ A  +    + +    PT+    + I  +C++G + +  ++
Sbjct: 318 NAVTFTILMDGYFKKGDIENAFSIFHR-MKDANILPTDTTLGIIIKGLCKAGRSFEGRDL 376

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
            N+   +G  P  +  + II G  K G +  A  V+  + E  +    +T+ Y  ++   
Sbjct: 377 FNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGI--TPSTVTYTSLIDGF 434

Query: 601 MKKKTADL---VLSGLKFFGLESKLKAKG 626
            K    DL   +L+ +K  GL+  +KA G
Sbjct: 435 CKGNNIDLALKLLNDMKRKGLKMDIKAYG 463



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 173/385 (44%), Gaps = 6/385 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ E   + +++      P+V +Y  +I     + N++A  +V++EM  +    + + 
Sbjct: 262 EGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVT 321

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  L+ G  K G +     +F  MK+  IL      G++I+GL   G+  +  DL    V
Sbjct: 322 FTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFV 381

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G+      YN+II G  +    + A  ++    +  + P   T   L+    +   +D
Sbjct: 382 SQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNID 441

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
              KLL  M++    +  D++ +   + G  K   +  A ++  EL+G G S +  IYN 
Sbjct: 442 LALKLLNDMKRKGLKM--DIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNS 499

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++     +  V++A+ L+ KM    +  +  +++  I   ++SG +L A + H +++   
Sbjct: 500 MITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKG 559

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
            +P   A+  L  GLC  G+ + A  ++ D  G     P+   Y   I    + G  ++ 
Sbjct: 560 ILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMI-PSVLIYNTLIAGHFKEGNLQEA 618

Query: 538 IEVLNEMTQEGCPPNEVICSAIISG 562
             + +EM   G  P+ +    +++G
Sbjct: 619 FRLHDEMLDRGLVPDNITYDILVNG 643



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 88/419 (21%), Positives = 184/419 (43%), Gaps = 9/419 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG +   L ++ ++  +   P+   Y+ +I       N++     + EMK   + + V +
Sbjct: 158 QGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYS 217

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             +++ G  K         +F +  E+G L +   +  L+  L  EGK+ +AC+L  +++
Sbjct: 218 LNSILEGYLKCQSWQNAFTMFNDALESG-LANVFTFNTLLSWLCKEGKMNEACNLWDEVI 276

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   ++  YN+II G CR    + A K+++  + +   P+  T   L+    + G ++
Sbjct: 277 AKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIE 336

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI---YNI 417
           N F +  +M+                 + K  R     D+F +   +G+  VP    YN 
Sbjct: 337 NAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGF--VPTCMPYNT 394

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++   ++ G +  A  ++ +M  + +  ++++++  I    +  +I  A +  N +    
Sbjct: 395 IIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKG 454

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
               + AY  L  G CK  ++ +A  L+ +  G   S P  F Y   I         E+ 
Sbjct: 455 LKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLS-PNRFIYNSMITGFKNMNNVEEA 513

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE--ANTIVYD 594
           I++  +M  EG P +    +++I G+ K G L  A  + T +  + +L +  A+T++ +
Sbjct: 514 IDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLIN 572



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 119/267 (44%), Gaps = 28/267 (10%)

Query: 92  ITDAF-RKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVE-----NNPTLASKFFHWAGKQ 145
           I D F ++        V  E+ ++  +TP  V     ++     NN  LA K  +   K+
Sbjct: 395 IIDGFIKEGNINLASNVYREMCEVG-ITPSTVTYTSLIDGFCKGNNIDLALKLLNDM-KR 452

Query: 146 KGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           KG K +  +Y  L   +C  R+                  +    E+L ++R     P+ 
Sbjct: 453 KGLKMDIKAYGTLIDGFCKRRD------------------MKSAHELLNELRGAGLSPNR 494

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           F Y +MI       N++  + ++++M  + +  D+  Y +LI GL K GR++   ++  E
Sbjct: 495 FIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTE 554

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M   GIL D   + VLI GL  +G+   A  +L+D+        + IYN++I G  +   
Sbjct: 555 MLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGN 614

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLL 350
             +A++L +  +   L PD  T + L+
Sbjct: 615 LQEAFRLHDEMLDRGLVPDNITYDILV 641



 Score = 42.7 bits (99), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 42/212 (19%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA---- 466
           S+   NIL+ A++      +A  L  KM  + +  +  +  + ++  ++ G+ILEA    
Sbjct: 4   SIQCMNILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQHF 63

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD------------------- 507
            +   + +E+ Q     AY+     LC       A+ L+R+                   
Sbjct: 64  LQAKARGVELDQ----EAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITA 119

Query: 508 CL--GNVASG------------PTEFKYALTILH-VCRSGEAEKIIEVLNEMTQEGCPPN 552
           C+  GNVA                    A +++   C  G     + ++NE+++ G  PN
Sbjct: 120 CVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPN 179

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           +V  S +I G CK+G +E+A + ++ ++ + +
Sbjct: 180 KVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGI 211


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 191/405 (47%), Gaps = 18/405 (4%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           + G + +  +YN++      N + R+ D            +   ++L KM     K DVF
Sbjct: 186 ENGCQPDMVTYNSIV-----NGICRSGDT-----------SLAFDMLRKMEERNVKADVF 229

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y+ +I  L  +  +DA + +++EM+   +++ V+ Y +L+ GLCK G+   G  L ++M
Sbjct: 230 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM 289

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
               I+ +   + VL++  V EGK+ +A +L K+++  G   ++  YN+++ G C   + 
Sbjct: 290 VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 349

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +A  + ++ V++  +PD  T   L+     + R+D+  K+   + K      A      
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSIL 409

Query: 385 EFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
                +  +I +A ++F+E+   G    V  Y IL+  L + G+++KAL +F  ++   +
Sbjct: 410 VQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 469

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
           ++  + ++  I+   + G + +A      +      P+V  Y  +  GLCK G +  A +
Sbjct: 470 DLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 529

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
           L+R  +    + P +  Y   I    R G+     +++ EM   G
Sbjct: 530 LLRK-MEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/406 (21%), Positives = 188/406 (46%), Gaps = 8/406 (1%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PD   +  +I  L  E  +   + + + M ++  + D++ Y +++ G+C+ G      +
Sbjct: 155 EPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFD 214

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           + R+M+E  +  D   Y  +I+ L  +G +  A  L K++   G ++ +  YNS++ GLC
Sbjct: 215 MLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 274

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +  +++    L +  V  ++ P+  T N LL    + G++    +L  +M  +   ++ +
Sbjct: 275 KAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEM--ITRGISPN 332

Query: 380 LEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFG 436
           +  +   + G   + R+  A ++ + + + K    +  +  L+     +  V   + +F 
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 392

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            +    L  N++++SI +Q   +SG I  A E   +++    +P V  Y  L  GLC  G
Sbjct: 393 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           +++ A+ +  D L           Y   I  +C+ G+ E    +   +  +G  PN +  
Sbjct: 453 KLEKALEIFED-LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 511

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
           + +ISG+CK G+L EA  +   + E       N   Y+ ++  H++
Sbjct: 512 TVMISGLCKKGSLSEANILLRKMEEDG--NAPNDCTYNTLIRAHLR 555



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 196/422 (46%), Gaps = 11/422 (2%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + + + ++M R+   P +  ++     +A  +  +  L   ++++ + +  ++     +I
Sbjct: 71  DAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 130

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              C+  +    + +  ++ + G   D   +  LI GL  EGKV KA  L+  +V++G +
Sbjct: 131 NCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQ 190

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  YNSI+ G+CR      A+ +     + ++  D  T + ++      G +D    L
Sbjct: 191 PDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 250

Query: 366 LAQMEK--LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALL 423
             +ME   +K SV          L    +    AL + + +  +   +V  +N+L+   +
Sbjct: 251 FKEMETKGIKSSVVT-YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 309

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G++++A  L+ +M    +  N ++++  +  +     + EA    + ++     P + 
Sbjct: 310 KEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIV 369

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDC--LGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
            +  L KG C +  +D  M + R+    G VA+  T   Y++ +   C+SG+ +   E+ 
Sbjct: 370 TFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVT---YSILVQGFCQSGKIKLAEELF 426

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
            EM   G  P+ +    ++ G+C +G LE+A ++F +L++ K+  +   ++Y  I IE M
Sbjct: 427 QEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM--DLGIVMYTTI-IEGM 483

Query: 602 KK 603
            K
Sbjct: 484 CK 485



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/354 (19%), Positives = 142/354 (40%), Gaps = 25/354 (7%)

Query: 229 MKKDLVEADVMAYVTLIMGLCKG--GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
           +K   +  D++  ++  +  C+     +  G+  FRE   +GI+               +
Sbjct: 22  LKTGTLRTDLLCTISSFLSSCERDFSSITNGNVCFRERLRSGIV---------------D 66

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
            K   A  L ++++ S     L  ++     + R KQF+      +    + +A +  T+
Sbjct: 67  IKKDDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTL 126

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL 404
           N ++ C     +    + +L ++ KL +    D   F   + G   E ++  A+ + + +
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYE--PDTTTFNTLINGLCLEGKVSKAVVLVDRM 184

Query: 405 KGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
              G    +  YN ++  +   G+   A  +  KM   N++ +  ++S  I      G I
Sbjct: 185 VENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCI 244

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN-VASGPTEFKYA 522
             A     ++       SV  YN L +GLCK G+ +   +L++D +   +      F   
Sbjct: 245 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 304

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           L +    + G+ ++  E+  EM   G  PN +  + ++ G C    L EA  + 
Sbjct: 305 LDVF--VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/477 (23%), Positives = 213/477 (44%), Gaps = 50/477 (10%)

Query: 179 DSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           D++ ++ EML    KM       DV  +  +I+ L     L   + + EEM    ++ D 
Sbjct: 136 DNKLKLVEMLH--SKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDE 193

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + + TL+ G  + G +    ++ ++M   G L+      VL+ G   EG+V +A   + +
Sbjct: 194 ITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLE 253

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           + + G+  D   +NS++ G CR+   + A  + +  ++    PD  T N L+    ++G 
Sbjct: 254 VSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGE 313

Query: 359 MDNFFKLLAQM--------------------EKLKFSVAADLEKF------------FEF 386
            +   ++L QM                    ++ +   A DL +             F  
Sbjct: 314 FEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNT 373

Query: 387 LV-----GKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRG 440
           L+      K + I  A+++FEE+K KG       Y+IL+ +L     +K+AL L  +M  
Sbjct: 374 LIQGLCLSKNQDI--AMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMES 431

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
                N++ ++  I    +S  I +A E  +++  +    S   YN L  GLCK   ++ 
Sbjct: 432 SGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEE 491

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A  L+ D +      P +F Y   + + CR G+ EK  +++  M   GC P+      +I
Sbjct: 492 ASQLM-DQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLI 550

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE-HMKKKTADLVLSGLKFF 616
            G+C+ G ++ A K+  +++ + ++   +   Y+ ++    M+K+T +    G++ F
Sbjct: 551 GGLCRAGRVDVASKLLRSVQMKGIVLTPH--AYNPVIQALFMRKRTKE----GMRLF 601



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 181/411 (44%), Gaps = 7/411 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E L  + ++      PD   + +++       N++  L + + M +   + DV  
Sbjct: 241 EGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYT 300

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI G+CK G   +  E+ ++M       +   Y  LI  L  E ++  A DL + LV
Sbjct: 301 YNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILV 360

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D+  +N++I GLC  K  D A ++FE        PD  T + L+       R+ 
Sbjct: 361 SKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLK 420

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE--ELKGKGYSSVPIYNIL 418
               LL +ME    +  A +       + K  RI  A ++F+  EL G   SSV  YN L
Sbjct: 421 EALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSV-TYNTL 479

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L +   V++A  L  +M    L+ +  +++  +      GDI +A +    +     
Sbjct: 480 IDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGC 539

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKI 537
            P +  Y  L  GLC+ G +D A  L+R   +  +   P  +   +  L + +    ++ 
Sbjct: 540 EPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRK--RTKEG 597

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCK-HGTLEEARKVFTNLRERKLLTE 587
           + +  EM ++  PP+ +    +  G+C   G ++EA      + E+ +L E
Sbjct: 598 MRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPE 648



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 158/377 (41%), Gaps = 58/377 (15%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEM-------------------LEIL 191
           N  +YN L   L + N   AA  +  ++ S+G + ++                   +E+ 
Sbjct: 332 NTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMF 391

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           E+M+   CKPD F Y+ +I  L  ER L   L + +EM+      + + Y TLI GLCK 
Sbjct: 392 EEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKS 451

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
            R+    E+F +M+  G+      Y  LI+GL    +V +A  L+  ++  G + D   Y
Sbjct: 452 RRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTY 511

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           NS++   CRV   +KA  + +    +   PD  T   L+      GR+D   KLL  ++ 
Sbjct: 512 NSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQM 571

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKK 430
                                              KG    P  YN ++ AL      K+
Sbjct: 572 -----------------------------------KGIVLTPHAYNPVIQALFMRKRTKE 596

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
            + LF +M   +   ++L+  I  +  C+   G I EA +   +++E   +P   ++  L
Sbjct: 597 GMRLFREMMEKSDPPDALTHKIVFRGLCN-GGGPIQEAIDFTVEMLEKGILPEFPSFGFL 655

Query: 489 TKGLCKIGEIDAAMMLV 505
            +GLC +   D  + L+
Sbjct: 656 AEGLCSLSMEDTLIELI 672



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 102/450 (22%), Positives = 184/450 (40%), Gaps = 57/450 (12%)

Query: 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK----ENG 268
           L    + D+   + +++K      +   + TLI            HE+   +K    E G
Sbjct: 65  LTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSF------TNFHEIENLLKILENELG 118

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
              D   Y + +  LV + K+     L   +V+ G   D+  +N +I  LC+  Q   A 
Sbjct: 119 FKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAI 178

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM------------------- 369
            + E      L PD  T   L+    E G ++   K+  QM                   
Sbjct: 179 LMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGF 238

Query: 370 -------EKLKFSVAADLEKF------FEFLVGKEERIMM---ALDVFEELKGKGYS-SV 412
                  E L+F +    E F      F  LV    RI     ALD+ + +  KG+   V
Sbjct: 239 CKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDV 298

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             YN L+  + ++GE +KA+ +  +M       N+++++  I    +  +I  A +    
Sbjct: 299 YTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARI 358

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           ++    +P V  +N L +GLC     D AM +  + + N    P EF Y++ I  +C   
Sbjct: 359 LVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEE-MKNKGCKPDEFTYSILIDSLCYER 417

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
             ++ + +L EM   GC  N V+ + +I G+CK   +E+A ++F  +    L    +++ 
Sbjct: 418 RLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQM--ELLGVSRSSVT 475

Query: 593 YDEIL--------IEHMKKKTADLVLSGLK 614
           Y+ ++        +E   +    +++ GLK
Sbjct: 476 YNTLIDGLCKNKRVEEASQLMDQMIMEGLK 505



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 158/387 (40%), Gaps = 47/387 (12%)

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TL++ L +         L +++K +G + +   +  LI+      ++     +L++  + 
Sbjct: 60  TLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLKILEN--EL 117

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G++ D   YN  +  L    +      L    V + +  D ST N L+            
Sbjct: 118 GFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLI------------ 165

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGA 421
            K L +  +L+                       A+ + EE+   G     I +  LM  
Sbjct: 166 -KALCKAHQLR----------------------PAILMLEEMANHGLKPDEITFTTLMQG 202

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
            +E G++  AL +  +M G    + ++S  + +    + G + EA     ++ E    P 
Sbjct: 203 FIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPD 262

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
              +N L  G C+IG ++ A+ +V D +      P  + Y   I  +C+ GE EK IE+L
Sbjct: 263 QVTFNSLVNGFCRIGNVNDALDIV-DFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEIL 321

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
            +M    C PN V  + +IS +CK   +E A  +   L  + LL +  T  ++ ++    
Sbjct: 322 QQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCT--FNTLIQGLC 379

Query: 602 KKKTADLVLSGLKFFGLESKLKAKGCK 628
             K  D+ +   +      ++K KGCK
Sbjct: 380 LSKNQDIAMEMFE------EMKNKGCK 400


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 178/370 (48%), Gaps = 8/370 (2%)

Query: 228 EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGE 286
           E+ + +   + + Y T+I G C  GRV    ++ REM+E  GI  ++  YG +I G    
Sbjct: 135 ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 194

Query: 287 GKVGKACDLLKDLVDSG-YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           G+V +A  +  +++  G  + +  +YN++IGG C   + D A    +  V+  +A   +T
Sbjct: 195 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 254

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE 403
            N L+      GR    ++L+ +M      +A D+  +   + G  KE  +  AL++FE 
Sbjct: 255 YNLLVHALFMDGRGTEAYELVEEMGG--KGLAPDVFTYNILINGHCKEGNVKKALEIFEN 312

Query: 404 LKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
           +  +G  ++V  Y  L+ AL + G+V++   LF +     +  + + ++  I  H  SG+
Sbjct: 313 MSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGN 372

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
           I  A E   ++ +    P    YN L +GLC +G +D A  L+ D +      P    Y 
Sbjct: 373 IDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLI-DEMTERGIQPDLVTYN 431

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             I      G+ +  + + NEM  +G  P  +  +A+I G+CK+G  ++A  +   + E 
Sbjct: 432 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 491

Query: 583 KLLTEANTIV 592
            +  + +T +
Sbjct: 492 GITPDDSTYI 501



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 150/331 (45%), Gaps = 35/331 (10%)

Query: 182 GRIAEMLEILEKM-RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           GR+ E +++ ++M  +   KP+   Y A+I     +  LD  L   + M +  V   V  
Sbjct: 195 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 254

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+  L   GR    +EL  EM   G+  D   Y +LI G   EG V KA ++ +++ 
Sbjct: 255 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 314

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G RA +  Y ++I  L +  Q  +  KLF+  V+  + PD    N L+   +  G +D
Sbjct: 315 RRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNID 374

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
             F+++ +MEK +  +A D                   DV              YN LM 
Sbjct: 375 RAFEIMGEMEKKR--IAPD-------------------DV-------------TYNTLMR 400

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L  +G V +A  L  +M    ++ + ++++  I  +   GD+ +A    N+++     P
Sbjct: 401 GLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 460

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
           ++  YN L +GLCK G+ D A  +V++ + N
Sbjct: 461 TLLTYNALIQGLCKNGQGDDAENMVKEMVEN 491



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 16/206 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G +    +Y AL Y LS+                +G++ E  ++ ++  R   +PD+ 
Sbjct: 315 RRGVRATVVTYTALIYALSK----------------KGQVQETDKLFDEAVRRGIRPDLV 358

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y A+I   +   N+D    +  EM+K  +  D + Y TL+ GLC  GRV    +L  EM
Sbjct: 359 LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM 418

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            E GI  D   Y  LI G   +G V  A  +  ++++ G+   L  YN++I GLC+  Q 
Sbjct: 419 TERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQG 478

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLL 350
           D A  + +  V++ + PD ST   L+
Sbjct: 479 DDAENMVKEMVENGITPDDSTYISLI 504



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 152/352 (43%), Gaps = 48/352 (13%)

Query: 248 LCKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           LC  G+  R  EL R+M + N +      Y  +I G    G+V  A D+++++ + G  A
Sbjct: 124 LCSAGKPARALELLRQMPRPNAV-----TYNTVIAGFCSRGRVQAALDIMREMRERGGIA 178

Query: 307 -DLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
            +   Y ++I G C+V + D+A K+F E+  + ++ P+    N L+    + G++D    
Sbjct: 179 PNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALL 238

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
              +M +   ++           +  + R   A ++ EE+ GKG +  V  YNIL+    
Sbjct: 239 YRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHC 298

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G VKKAL +F  M    +    ++++  I    + G + E  +  ++ +     P + 
Sbjct: 299 KEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLV 358

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            YN L       G ID A                                     E++ E
Sbjct: 359 LYNALINSHSTSGNIDRA------------------------------------FEIMGE 382

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIV 592
           M ++   P++V  + ++ G+C  G ++EARK+   + ER +   L   NT++
Sbjct: 383 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLI 434



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 16/231 (6%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G     A+YN L + L               MD  GR  E  E++E+M      PDVF
Sbjct: 245 ERGVAMTVATYNLLVHAL--------------FMD--GRGTEAYELVEEMGGKGLAPDVF 288

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  +I     E N+   L ++E M +  V A V+ Y  LI  L K G+V    +LF E 
Sbjct: 289 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEA 348

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              GI  D  +Y  LI      G + +A +++ ++       D   YN+++ GLC + + 
Sbjct: 349 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 408

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
           D+A KL +   +  + PD  T N L+   +  G + +  ++  +M    F+
Sbjct: 409 DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFN 459



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 5/261 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG++   L   ++M        V  Y  ++  L  +        + EEM    +  DV  
Sbjct: 230 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 289

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK G V +  E+F  M   G+      Y  LI  L  +G+V +   L  + V
Sbjct: 290 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAV 349

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G R DL +YN++I         D+A+++     +  +APD  T N L+     +GR+D
Sbjct: 350 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 409

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYS-SVPIYNI 417
              KL+ +M   +  +  DL  +   + G   +  +  AL +  E+  KG++ ++  YN 
Sbjct: 410 EARKLIDEMT--ERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNA 467

Query: 418 LMGALLEIGEVKKALYLFGKM 438
           L+  L + G+   A  +  +M
Sbjct: 468 LIQGLCKNGQGDDAENMVKEM 488



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 5/163 (3%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           S+PI    +  LL       A  LF  M  L L + + +F+I ++    +G    A E  
Sbjct: 78  SLPISTASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALE-- 135

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
             ++     P+   YN +  G C  G + AA+ ++R+        P ++ Y   I   C+
Sbjct: 136 --LLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCK 193

Query: 531 SGEAEKIIEVLNEMTQEG-CPPNEVICSAIISGMCKHGTLEEA 572
            G  ++ ++V +EM  +G   P  V+ +A+I G C  G L+ A
Sbjct: 194 VGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTA 236



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 54/105 (51%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E  +++++M     +PD+  Y  +I   + + ++   LR+  EM        ++ Y
Sbjct: 406 GRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTY 465

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
             LI GLCK G+      + +EM ENGI  D + Y  LIEGL  E
Sbjct: 466 NALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 510


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/453 (22%), Positives = 197/453 (43%), Gaps = 43/453 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ +   ++  M     +P+ + Y  +I  L     +   L V ++M       DV+ Y
Sbjct: 149 GRLGDARRVVGGMP---VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTY 205

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+   CKG    +  EL   M+  G   +   Y VL++G+ GEG V  A +LL++L  
Sbjct: 206 NILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPS 265

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G +     YN+++ GLC  +++  A +L    ++++  P+ +T N ++      G +  
Sbjct: 266 HGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQ 325

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
             +LL +M   K    A++  +   + G  ++  +  A+ +  ++K  G    +  YN L
Sbjct: 326 AIQLLEKMS--KHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTL 383

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L    +   A  L   M       ++++F+  I    + G +++A E   ++ +   
Sbjct: 384 LKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGC 443

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAM-----------------MLVRDCLGNVAS------- 514
            P+   Y+ +  GL K  ++D A+                  L+ +CL +  +       
Sbjct: 444 TPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQT 503

Query: 515 ---------GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
                     P    Y   +L +CR+G+ E  I+++  M   GC P+++    +I G+  
Sbjct: 504 VRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAY 563

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
            G L EAR++   L  R +L   N+++  E L+
Sbjct: 564 EGYLNEARELLIKLCSRDVLV--NSLIKSEALL 594



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 141/308 (45%), Gaps = 24/308 (7%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           N A++N + Y L R  L + A                +++LEKM ++ C  ++  Y A+I
Sbjct: 306 NEATFNVVIYSLCRKGLLQQA----------------IQLLEKMSKHGCTANIVTYNAII 349

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
             L  +RN+D  + +  +MK    + D++ Y TL+ GLC   + V   EL   M +NG L
Sbjct: 350 NGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCL 409

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
            D   +  LI  L  +G +  A ++ K + D G   +   Y++II GL +  + D+A +L
Sbjct: 410 PDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALEL 469

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS-VAADLEKFFEFLVG 389
           F         PD   +  LL  C  +   D   + +  + KL+ S ++     +   L+G
Sbjct: 470 FNEMGHKGFNPD--KIYQLLAEC--LNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLG 525

Query: 390 --KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
             +  +   A+D+   +   G     + Y IL+  L   G + +A  L  K+   ++ VN
Sbjct: 526 LCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRDVLVN 585

Query: 447 SLSFSIAI 454
           SL  S A+
Sbjct: 586 SLIKSEAL 593



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 167/401 (41%), Gaps = 13/401 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G +   L ++E   R    PD      ++R L      D   RV          A V+A
Sbjct: 84  RGDLDAALRLVESSPR---PPDAALANRLVRDLCRRGRPDDAERVVGACGP---AATVVA 137

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L  G C+ GR+     +   M    +  +   Y  LI  L   G+V  A  +L D++
Sbjct: 138 YGALTDGYCRAGRLGDARRVVGGMP---VQPNAYTYNPLIHTLCERGQVRDALSVLDDML 194

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D+  YN ++   C+ + + +A +L ++   +   P+  T N L+      G +D
Sbjct: 195 CRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVD 254

Query: 361 NFFKLLAQMEKLKFSVAA-DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
           +  +LL  +       +  +     + L   E        V E L+     +   +N+++
Sbjct: 255 DALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVI 314

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            +L   G +++A+ L  KM       N ++++  I    E  ++  A    +K+      
Sbjct: 315 YSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCK 374

Query: 480 PSVAAYNCLTKGLCKIGE-IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           P +  YN L KGLC   + +DA  ++  D +      P    +   I  +C+ G     I
Sbjct: 375 PDIVTYNTLLKGLCSAAQWVDAEELM--DNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAI 432

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           EV  +M  +GC PN +  S IISG+ K   L++A ++F  +
Sbjct: 433 EVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEM 473



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 104/254 (40%), Gaps = 47/254 (18%)

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
           ++V  Y  L       G +  A  + G   G+ ++ N+ +++  I    E G + +A   
Sbjct: 133 ATVVAYGALTDGYCRAGRLGDARRVVG---GMPVQPNAYTYNPLIHTLCERGQVRDALSV 189

Query: 470 HNKIIEMSQVPSVAAYNCLTK-----------------------------------GLCK 494
            + ++     P V  YN L +                                   G+C 
Sbjct: 190 LDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCG 249

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
            G++D A+ L+R+ L +    P+   Y   +  +C +       E++ EM +E CPPNE 
Sbjct: 250 EGDVDDALELLRN-LPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEA 308

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK 614
             + +I  +C+ G L++A ++   + +      AN + Y+ I+    +++  D       
Sbjct: 309 TFNVVIYSLCRKGLLQQAIQLLEKMSKHG--CTANIVTYNAIINGLCEQRNVD------G 360

Query: 615 FFGLESKLKAKGCK 628
             GL SK+K+ GCK
Sbjct: 361 AMGLLSKMKSYGCK 374


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 191/428 (44%), Gaps = 20/428 (4%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           D   Y  +I  L   R     L +   M  +  +A V+ Y TLI GLCK G +     L 
Sbjct: 9   DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALL 68

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           ++M + G   +   Y  LI+GL    +   A   +K ++ SG   DL  YNS+I GLC  
Sbjct: 69  QKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMA 128

Query: 322 KQFDKA-YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            + D A   L E+ ++    PD  T N  +    + G++D   ++L +M+  +  ++ D+
Sbjct: 129 NRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMD--RGGISPDV 186

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLF 435
             F   + G  K  RI  A  VF+ +  +G   VP    Y+I++  L     +     + 
Sbjct: 187 VTFCSIISGLCKANRIDDAFQVFKGMLERG--CVPDSLTYSIMLDNLSRANRLDTVEEVL 244

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             M        S +++  I   + +GDI  A   + + +E   V  V  +N     LC+ 
Sbjct: 245 EHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRS 304

Query: 496 GEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG-CPPN 552
           G+   A  ++   LG + SG  P    Y   I  +C+SG  +   ++  +M   G C P+
Sbjct: 305 GKFPLAKNIL---LGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPD 361

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK---KKTADLV 609
            +  + +ISG CK G L +A+++   ++ + +    + + Y+ ++    K    K A L+
Sbjct: 362 VIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVP-DVVTYNTMIDGQSKFGSLKQAKLL 420

Query: 610 LSGLKFFG 617
           L  ++  G
Sbjct: 421 LEEMQAVG 428



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 185/405 (45%), Gaps = 21/405 (5%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           LE+L  M  N     V  YT +I  L    +LDA   + ++M       +V+ Y  LI G
Sbjct: 30  LELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDG 89

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL-VDSGYRA 306
           LCK  R     +  + M  +G   D   Y  LI GL    ++  A  +L++L ++SG   
Sbjct: 90  LCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIP 149

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D+  YN+ I GLC+  + DK  ++ E   +  ++PD  T   ++    +  R+D+ F++ 
Sbjct: 150 DVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVF 209

Query: 367 AQM-------EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNIL 418
             M       + L +S+  D        + +  R+    +V E +   G Y+    Y  L
Sbjct: 210 KGMLERGCVPDSLTYSIMLD-------NLSRANRLDTVEEVLEHMVKSGHYALSATYAPL 262

Query: 419 MGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           + AL+  G+++ A + + +    G  +EV + +  I   C   SG    A      +IE 
Sbjct: 263 IHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALC--RSGKFPLAKNILLGMIES 320

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
             +P++ +YN +  GLCK G +D A  L R  L +    P    +   I   C++G   +
Sbjct: 321 GSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQ 380

Query: 537 IIEVLNEMTQEG-CPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
             ++L EM  +  C P+ V  + +I G  K G+L++A+ +   ++
Sbjct: 381 AQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQ 425



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 138/338 (40%), Gaps = 59/338 (17%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQV-PELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           + G + +  +YN+L + L   N    A  V  ELM   GRI                PDV
Sbjct: 108 RSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRI----------------PDV 151

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y   I  L     LD  L + EEM +  +  DV+ + ++I GLCK  R+    ++F+ 
Sbjct: 152 VTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKG 211

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA----------------- 306
           M E G + D   Y ++++ L    ++    ++L+ +V SG+ A                 
Sbjct: 212 MLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGD 271

Query: 307 ------------------DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
                             ++  +N+ IG LCR  +F  A  +    ++    P+  + N 
Sbjct: 272 IESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNF 331

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELK 405
           ++    + G +D+ +KL  +M  L          FF  L+    K  R+  A  + +E+K
Sbjct: 332 VIDGLCKSGNVDDAWKLSRKM--LDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMK 389

Query: 406 GKGYS--SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
            K      V  YN ++    + G +K+A  L  +M+ +
Sbjct: 390 AKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAV 427



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 115/317 (36%), Gaps = 88/317 (27%)

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
           +R D  IYN++I GLC+ ++   A +L  V   +       T   L+    + G +D   
Sbjct: 6   FRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQ 65

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
            LL +M       A ++  +   + G  K  R   A+   + +   G    +  YN L+ 
Sbjct: 66  ALLQKMADA--GCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIH 123

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L     +  A        GL L+                            +IE  ++P
Sbjct: 124 GLCMANRMDDA--------GLVLQ--------------------------ELMIESGRIP 149

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  YN    GLCK G++D                                    K +E+
Sbjct: 150 DVVTYNTFISGLCKAGKLD------------------------------------KGLEM 173

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL-------------LTE 587
           L EM + G  P+ V   +IISG+CK   +++A +VF  + ER               L+ 
Sbjct: 174 LEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSR 233

Query: 588 ANTIVYDEILIEHMKKK 604
           AN +   E ++EHM K 
Sbjct: 234 ANRLDTVEEVLEHMVKS 250


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 197/462 (42%), Gaps = 45/462 (9%)

Query: 192 EKMRRNLCK----PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           ++M R  C     P +  Y  +I         D  L +   + K+ +  D  +Y +LI G
Sbjct: 85  QRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYG 143

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
             K G V + H LF EM E G+L    I   +I+ L    ++ KA  +++ +VDSG   D
Sbjct: 144 FVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 203

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           L  Y+ II GLC+ K  DKA ++ E  V+    P+  T N L+   +  G  +   ++  
Sbjct: 204 LFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFK 263

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE--LKG------------KGYSSVP 413
           QM         D    F   + K  R   A  +F+   LKG             GY++  
Sbjct: 264 QMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATAT 323

Query: 414 ------------------------IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
                                   ++NIL+ A    G + KA+ +F  M+   +  ++++
Sbjct: 324 DSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVT 383

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           F+  I      G + +A    N ++++   PS A Y CL +G C  GE+  A  L+ + +
Sbjct: 384 FATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMM 443

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
                 P    ++  I ++C+ G   +  ++++ M Q G  PN V  ++++ G C  G +
Sbjct: 444 NKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNM 503

Query: 570 EEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLS 611
           EEA  +   +    +  E N  +Y  ++  + K    D  L+
Sbjct: 504 EEAFALLDAMASIGI--EPNCYIYGTLVDGYCKNGRIDDALT 543



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 173/412 (41%), Gaps = 7/412 (1%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           +A++  I   M      P+   +  +I   A    +D  + ++E+M+   +  D + + T
Sbjct: 327 LADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 386

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I  LC+ GR+      F  M + G+    A+YG LI+G    G++ KA +L+ ++++  
Sbjct: 387 VISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKD 446

Query: 304 Y-RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
                +  ++SII  LC+  +  +   + ++ VQ    P+  T N L+     +G M+  
Sbjct: 447 IPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEA 506

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGA 421
           F LL  M  +       +         K  RI  AL VF ++  KG     + Y+I++  
Sbjct: 507 FALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHG 566

Query: 422 LLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
           L +      A  +F +M   G  + +++    +   C     D  EA     K+  M+  
Sbjct: 567 LFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTD--EANMLLEKLFAMNVK 624

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
             +  +N +   + K+G    A  L  D +      P    Y++ I ++ +    E+   
Sbjct: 625 FDIITFNIVISAMFKVGRRQEAKELF-DAISTYGLVPNIQTYSMMITNLIKEESYEEADN 683

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           +   + + G   +  + + I+  +     + +A    + + E  L  EA+TI
Sbjct: 684 LFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNLTLEASTI 735



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 142/315 (45%), Gaps = 28/315 (8%)

Query: 161 CLSRNNLFRAADQVPELMDS-------------------QGRIAEMLEILEKMRRNLCKP 201
           C +   L +A + + E+M+                    +GR+AE  +I++ M +   +P
Sbjct: 426 CCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRP 485

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +V  + +++       N++    + + M    +E +   Y TL+ G CK GR+     +F
Sbjct: 486 NVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVF 545

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           R+M   G+     +Y +++ GL    +   A  +  ++++SG    +  Y  ++GGLCR 
Sbjct: 546 RDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRN 605

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
              D+A  L E     ++  D  T N ++    ++GR     +L   +    + +  +++
Sbjct: 606 NCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAIS--TYGLVPNIQ 663

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKKA---LYLF 435
            +   +    KEE    A ++F  ++  G++S   + N ++  LL   EV KA   L + 
Sbjct: 664 TYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSII 723

Query: 436 GKMRGLNLEVNSLSF 450
           G+   L LE +++S 
Sbjct: 724 GE-NNLTLEASTISL 737


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 126/511 (24%), Positives = 217/511 (42%), Gaps = 96/511 (18%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G+  N  ++N L   L RN                    + + +L +MRRN   PDVF
Sbjct: 135 KRGFAFNVYNHNILLKGLCRN----------------LECGKAVSLLREMRRNSLMPDVF 178

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMK-------------------------------KDL 233
           +Y  +IR     + L+  L +  EMK                               K++
Sbjct: 179 SYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEM 238

Query: 234 ----VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
               +EAD++ Y +LI G C  G + RG  LF E+ E G       Y  LI G    G++
Sbjct: 239 KFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQL 298

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            +A ++ + +++ G R ++  Y  +I GLC V +  +A +L  + ++ D  P+  T N +
Sbjct: 299 KEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNII 358

Query: 350 L--VC----------------------------------CAEMGRMDNFFKLLAQMEKLK 373
           +  +C                                  CA+ G +D   KLL  M K  
Sbjct: 359 INKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAK-GDLDEASKLLYLMLKDS 417

Query: 374 FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGK-GYSSVPIYNILMGALLEIGEVKK 430
                D+  +   + G  KE R+  ALD+++ L  K G       NIL+ + L+ G+V K
Sbjct: 418 SYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNK 477

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESG--DILEACECHNKIIEMSQVPSVAAYNCL 488
           A+ L+ ++    +  NS +++  I    ++G  ++ +   C  ++ E+   PSV  YNCL
Sbjct: 478 AMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQ--PSVFDYNCL 535

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
              LCK G +D A  L  + +    + P    + + I    ++G+ +    +L  M++ G
Sbjct: 536 LSSLCKEGSLDQAWRLFEE-MQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAG 594

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             P+    S +I+   K G L+EA   F  +
Sbjct: 595 LSPDLFTYSKLINRFLKLGYLDEAISFFDKM 625



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 112/445 (25%), Positives = 195/445 (43%), Gaps = 41/445 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E +  L++M+    + D+  YT++IR       LD    +++E+ +       + Y
Sbjct: 226 GKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITY 285

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G CK G++    E+F  M E G+  +   Y  LI+GL G GK  +A  LL  +++
Sbjct: 286 NTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIE 345

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                +   YN II  LC+      A ++ E+  +    PD  T N LL      G +D 
Sbjct: 346 KDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDE 405

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGK-GYSSVPIYNIL 418
             KLL  M K       D+  +   + G  KE R+  ALD+++ L  K G       NIL
Sbjct: 406 ASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNIL 465

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG--DILEACECHNKIIEM 476
           + + L+ G+V KA+ L+ ++    +  NS +++  I    ++G  ++ +   C  ++ E+
Sbjct: 466 LNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSEL 525

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC---------------------LGNVASG 515
              PSV  YNCL   LCK G +D A  L  +                       G++ S 
Sbjct: 526 Q--PSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSA 583

Query: 516 -------------PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
                        P  F Y+  I    + G  ++ I   ++M   G  P+  IC +++  
Sbjct: 584 ESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKY 643

Query: 563 MCKHGTLEEARKVFTNLRERKLLTE 587
               G  ++  ++   L ++ ++ +
Sbjct: 644 CISQGETDKLTELVKKLVDKDIVLD 668



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 159/347 (45%), Gaps = 43/347 (12%)

Query: 256 RGHEL----FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           R HEL    +R+M E    I+      L+E  V   K G A  +L  ++  G+  ++  +
Sbjct: 86  RNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNH 145

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N ++ GLCR  +  KA  L     ++ L PD  + N ++                     
Sbjct: 146 NILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVI--------------------- 184

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKK 430
             F    +LEK              AL++  E+KG G S S+  + IL+ A  + G++ +
Sbjct: 185 RGFCEGKELEK--------------ALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDE 230

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A+    +M+ + LE + + ++  I+   + G++       ++++E    P    YN L +
Sbjct: 231 AMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIR 290

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           G CK+G++  A  +  + +      P  + Y   I  +C  G+ ++ +++LN M ++   
Sbjct: 291 GFCKLGQLKEASEIF-EFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEE 349

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           PN V  + II+ +CK G + +A ++   +++R+  T  + I Y+ +L
Sbjct: 350 PNAVTYNIIINKLCKDGLVADAVEIVELMKKRR--TRPDNITYNILL 394



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 154/326 (47%), Gaps = 12/326 (3%)

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M + G   +   + +L++GL    + GKA  LL+++  +    D+  YN++I G C  K+
Sbjct: 133 MLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKE 192

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            +KA +L         +    T   L+    + G+MD     L +M+ +   + ADL  +
Sbjct: 193 LEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFM--GLEADLVVY 250

Query: 384 FEFLVGKEE--RIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKM-- 438
              + G  +   +     +F+E+  +G S   I YN L+    ++G++K+A  +F  M  
Sbjct: 251 TSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIE 310

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
           RG+   V + +  I   C V  G   EA +  N +IE  + P+   YN +   LCK G +
Sbjct: 311 RGVRPNVYTYTGLIDGLCGV--GKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLV 368

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG--CPPNEVIC 556
             A+ +V + +    + P    Y + +  +C  G+ ++  ++L  M ++     P+ +  
Sbjct: 369 ADAVEIV-ELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISY 427

Query: 557 SAIISGMCKHGTLEEARKVFTNLRER 582
           +A+I G+CK   L +A  ++  L E+
Sbjct: 428 NALIHGLCKENRLHQALDIYDLLVEK 453



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 118/287 (41%), Gaps = 25/287 (8%)

Query: 108 VTELSKLRRVTPD-----LVAEVLKVENNPTLASKFFHWAGKQKGYKH-NFASYNALAYC 161
           + EL K RR  PD     ++   L  + +   ASK  +   K   Y   +  SYNAL + 
Sbjct: 374 IVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHG 433

Query: 162 LSRNNLFRAADQVPELMDSQ-------------------GRIAEMLEILEKMRRNLCKPD 202
           L + N    A  + +L+  +                   G + + +E+ +++  +    +
Sbjct: 434 LCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRN 493

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
              YTAMI        L+    +  +M+   ++  V  Y  L+  LCK G + +   LF 
Sbjct: 494 SDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFE 553

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EM+ +    D   + ++I+G +  G +  A  LL  +  +G   DL  Y+ +I    ++ 
Sbjct: 554 EMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLG 613

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
             D+A   F+  V     PD    + +L  C   G  D   +L+ ++
Sbjct: 614 YLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKL 660



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 3/184 (1%)

Query: 162 LSRNNLFRAADQVPELMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
           +S + + R +D    ++D     G +     +L KMR +  +P VF Y  ++  L  E +
Sbjct: 485 ISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGS 544

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
           LD   R++EEM++D    DV+++  +I G  K G +     L   M   G+  D   Y  
Sbjct: 545 LDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSK 604

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           LI   +  G + +A      +VDSG+  D  I +S++       + DK  +L +  V  D
Sbjct: 605 LINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKD 664

Query: 339 LAPD 342
           +  D
Sbjct: 665 IVLD 668


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/451 (23%), Positives = 202/451 (44%), Gaps = 12/451 (2%)

Query: 181 QGRIAEMLE-ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +G   ++LE +  +M     KPDV  +  +++ L     +   + + EEM    V  D  
Sbjct: 162 EGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDET 221

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            + TL+ G  + G +     +   M E G    +    VLI G    G+V  A   ++  
Sbjct: 222 TFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQE 281

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           + +G+  D   YN+ + GLC+      A K+ +V VQ+   PD  T N ++ C  + G++
Sbjct: 282 IANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQL 341

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           +    +L QM  ++     D+  F   +V      R+  ALD+  ++  KG S  V  +N
Sbjct: 342 EEAKGILNQM--VERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFN 399

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+ AL ++G+ + AL LF +M+      + ++++  I      G + +A +   ++   
Sbjct: 400 ILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESA 459

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
               S   YN +  GLCK   I+ A   V D +           +   I  +C+    + 
Sbjct: 460 GCPRSTVTYNTIIDGLCKKMRIEEAEE-VFDQMDLQGISRNAITFNTLIDGLCKDKRIDD 518

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
             +++++M  EG  PN +  ++I++  CK G +++A  +   +       E + + Y  +
Sbjct: 519 ANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGF--EVDVVTYGTL 576

Query: 597 ---LIEHMKKKTADLVLSGLKFFGLESKLKA 624
              L +  + + A  +L G++  G+ +  KA
Sbjct: 577 INGLCKAGRTQVALKLLRGMRIKGMRATPKA 607



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 177/410 (43%), Gaps = 7/410 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + L  +++   N  +PD   Y   +  L    ++   L+V + M ++  + DV  Y
Sbjct: 269 GRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTY 328

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++  LCK G++     +  +M E G L D   +  LI  L    ++ +A DL + +  
Sbjct: 329 NIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTL 388

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  +N +I  LC+V     A +LFE        PD  T N L+     +G++  
Sbjct: 389 KGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGK 448

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
              LL +ME      +          + K+ RI  A +VF+++  +G S   I +N L+ 
Sbjct: 449 ALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLID 508

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L +   +  A  L  +M    L+ N+++++  +  + + GDI +A +    +       
Sbjct: 509 GLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEV 568

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKII 538
            V  Y  L  GLCK G    A+ L+R   G    G   T   Y   I  + R       +
Sbjct: 569 DVVTYGTLINGLCKAGRTQVALKLLR---GMRIKGMRATPKAYNPVIQSLFRRNNTRDAM 625

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCK-HGTLEEARKVFTNLRERKLLTE 587
            +  EMT+ G PP+      +  G+C+  G++ EA      + ++  + E
Sbjct: 626 NLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPE 675



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 159/355 (44%), Gaps = 21/355 (5%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+G+  +  +YN +  CL +N                G++ E   IL +M    C PD+ 
Sbjct: 318 QEGHDPDVFTYNIVVNCLCKN----------------GQLEEAKGILNQMVERGCLPDIT 361

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            +  +I  L +   L+  L +  ++    +  DV  +  LI  LCK G       LF EM
Sbjct: 362 TFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEM 421

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K +G   D   Y  LI+ L   GK+GKA DLLK++  +G       YN+II GLC+  + 
Sbjct: 422 KSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRI 481

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           ++A ++F+      ++ +  T N L+    +  R+D+  +L++QM  +   +  +   + 
Sbjct: 482 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQM--ISEGLQPNNITYN 539

Query: 385 EFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
             L    K+  I  A D+ + +   G+   V  Y  L+  L + G  + AL L   MR  
Sbjct: 540 SILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIK 599

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            +     +++  IQ      +  +A     ++ E+ + P    Y  + +GLC+ G
Sbjct: 600 GMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGG 654



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 178/380 (46%), Gaps = 14/380 (3%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           ++AD + Y  L+  L +G ++     ++ EM E GI  D   +  L++ L    +V  A 
Sbjct: 146 IQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAV 205

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            +L+++  SG   D   + +++ G         A ++    ++   +P   TVN L+   
Sbjct: 206 LMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGY 265

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS- 410
            ++GR+++    + Q  ++      D   +  F+ G  +   +  AL V + +  +G+  
Sbjct: 266 CKLGRVEDALGYIQQ--EIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDP 323

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDIL-EAC 467
            V  YNI++  L + G++++A  +  +M  RG   ++ + +  I   C   SG+ L EA 
Sbjct: 324 DVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALC---SGNRLEEAL 380

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
           +   ++      P V  +N L   LCK+G+   A+ L  + + +    P E  Y   I +
Sbjct: 381 DLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEE-MKSSGCTPDEVTYNTLIDN 439

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           +C  G+  K +++L EM   GCP + V  + II G+CK   +EEA +VF  +  + +   
Sbjct: 440 LCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGI--S 497

Query: 588 ANTIVYDEILIEHMKKKTAD 607
            N I ++ ++    K K  D
Sbjct: 498 RNAITFNTLIDGLCKDKRID 517



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 154/355 (43%), Gaps = 7/355 (1%)

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           GI  D  +Y  L+  LV   K+     +  ++ + G + D+  +N+++  LCR  Q   A
Sbjct: 145 GIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTA 204

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
             + E      +APD +T   L+    E G +    ++ A+M ++  S            
Sbjct: 205 VLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLING 264

Query: 388 VGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
             K  R+  AL   ++    G+    I YN  +  L + G V  AL +   M     + +
Sbjct: 265 YCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPD 324

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
             +++I + C  ++G + EA    N+++E   +P +  +N L   LC    ++ A+ L R
Sbjct: 325 VFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLAR 384

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
                  S P  + + + I  +C+ G+ +  + +  EM   GC P+EV  + +I  +C  
Sbjct: 385 QVTLKGLS-PDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSL 443

Query: 567 GTLEEARKVFTNLRERKLLTEANTIVYDEI---LIEHMKKKTADLVLSGLKFFGL 618
           G L +A  +   +         +T+ Y+ I   L + M+ + A+ V   +   G+
Sbjct: 444 GKLGKALDLLKEMESAG--CPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGI 496



 Score = 45.4 bits (106), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 5/152 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR    L++L  MR    +    AY  +I+ L    N    + ++ EM +     D   Y
Sbjct: 584 GRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTY 643

Query: 242 VTLIMGLCKGGRVVR-GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             +  GLC+GG  +R   +   EM + G + + + + +L EGL+  G        ++ ++
Sbjct: 644 KIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIII 703

Query: 301 DSGYRADLGIYN-SIIGGLCRVKQFDKAYKLF 331
           +   +ADLG  + S I G  ++++F  A   F
Sbjct: 704 E---KADLGDSDVSAIRGYLKIRKFYDALATF 732


>gi|414591629|tpg|DAA42200.1| TPA: hypothetical protein ZEAMMB73_531547 [Zea mays]
          Length = 462

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 194/412 (47%), Gaps = 30/412 (7%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + +M ++ + M  +   PD++ +  +I+  A    LD  + ++ EM+   V+  V+
Sbjct: 41  TKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVV 100

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y+T+I  LC+ G++    E F +M + G++ D+  Y  LI+G    G + KA +L+ ++
Sbjct: 101 TYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEI 160

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +++G R D+  + SII  LC++ +   A  +F++TV   L PD    N L+     +G+M
Sbjct: 161 MNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKM 220

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
           +   ++   M      V+A +E                 +V  E+  KG   S  +YNI+
Sbjct: 221 EKALRVFDAM------VSAGIEP----------------NVVGEMLQKGIKPSTILYNII 258

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L E G    A   F +M    + +N  ++SI ++   ++    EA     ++  M+ 
Sbjct: 259 IDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNV 318

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA-SG--PTEFKYALTILHVCRSGEAE 535
              +   N +  G+ +   ++ A    +D   +++ SG  P    Y++ I ++ + G  E
Sbjct: 319 KIDIITLNTMIAGMFQTRRVEEA----KDLFASISRSGLVPCAVTYSIMITNLIKEGLVE 374

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           +  ++ + M   GC P+  + + ++  + K   +  A    + + ER    E
Sbjct: 375 EAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLE 426



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 162/372 (43%), Gaps = 34/372 (9%)

Query: 225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
           V++ M       DV +Y  ++ G    G +V   +LF  M  +GI  D   + VLI+   
Sbjct: 16  VFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYA 75

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
             G + KA  +  ++ D G +  +  Y ++I  LCR+ + D A + F   +   + PD  
Sbjct: 76  NCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKY 135

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQM--EKLKFSVAADLEKFFEFLVG---KEERIMMALD 399
             + L+      G +    +L++++    ++  +      FF  ++    K  R+M A +
Sbjct: 136 AYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIV-----FFGSIINNLCKLGRVMDAQN 190

Query: 400 VFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV 458
           +F+     G +    +YN+LM     +G+++KAL +F  M    +E N +          
Sbjct: 191 IFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV---------- 240

Query: 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE 518
             G++L+      K I+    PS   YN +  GL + G    A +   + +        +
Sbjct: 241 --GEMLQ------KGIK----PSTILYNIIIDGLFEAGRTVPAKVKFHE-MTESGIAMNK 287

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
             Y++ +  + ++   ++ I +  E+       + +  + +I+GM +   +EEA+ +F +
Sbjct: 288 CTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFAS 347

Query: 579 LRERKLLTEANT 590
           +    L+  A T
Sbjct: 348 ISRSGLVPCAVT 359



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/388 (20%), Positives = 158/388 (40%), Gaps = 62/388 (15%)

Query: 248 LCKGGRV-----------------------------------VRGHELFREMKENGILID 272
           LCK G++                                   V   +LF  M  +GI  D
Sbjct: 4   LCKYGKIKEDRDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 63

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              + VLI+     G + KA  +  ++ D G +  +  Y ++I  LCR+ + D A + F 
Sbjct: 64  IYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFN 123

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKLKFSVAADLEKFFEFLVG- 389
             +   + PD    + L+      G +    +L++++    ++  +      FF  ++  
Sbjct: 124 QMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIV-----FFGSIINN 178

Query: 390 --KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
             K  R+M A ++F+     G +    +YN+LM     +G+++KAL +F  M    +E N
Sbjct: 179 LCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 238

Query: 447 -------------SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
                        ++ ++I I    E+G  + A    +++ E     +   Y+ + +GL 
Sbjct: 239 VVGEMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLF 298

Query: 494 KIGEIDAAMMLVRDCLG-NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           K    D A+ L ++    NV          +  +   R  E  K  ++   +++ G  P 
Sbjct: 299 KNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAK--DLFASISRSGLVPC 356

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLR 580
            V  S +I+ + K G +EEA  +F++++
Sbjct: 357 AVTYSIMITNLIKEGLVEEAEDMFSSMQ 384


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 178/400 (44%), Gaps = 5/400 (1%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           + M  +G I     + E+M+     PD   Y +MI        LD  +  +EEMK    E
Sbjct: 141 DCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCE 200

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            DV+ Y +LI   CK G++ +G E +REMK++G+  +   Y  L++    E  + +A   
Sbjct: 201 PDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKF 260

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
             D+   G+  +   Y S++   C++     A++L    ++  +  +  T   L+    +
Sbjct: 261 YVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCD 320

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SV 412
             RM    KL  +M  +   V  +L  +   + G  K + +  AL++  ELKG+G    +
Sbjct: 321 AERMKEAEKLFGKM--VTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDL 378

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
            +Y   +  L  + +++ A  +  +M+   ++ N+L ++  +  + +SG+  E      +
Sbjct: 379 LLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEE 438

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           + E+    +V  +  L  GLCK   +  A+        +    P    Y   I  +C+  
Sbjct: 439 MQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKEN 498

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           + +    +  +M QEG  P+    ++++ G  K G + EA
Sbjct: 499 QVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEA 538



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/447 (22%), Positives = 196/447 (43%), Gaps = 40/447 (8%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + +   E+M+   C+PDV  Y ++I        L   L  + EMK+  ++ +V++Y
Sbjct: 182 GRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSY 241

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+   CK   + +  + + +M+  G + +   Y  L++     G +  A  L  ++++
Sbjct: 242 STLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLE 301

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++  Y ++I GLC  ++  +A KLF   V   + P+ ++ N L+    +   MD 
Sbjct: 302 VGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDR 361

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNIL 418
             +LL +++     +  DL  +  F+ G    E+I  A  V  E++  G  ++  IY  L
Sbjct: 362 ALELLNELKGR--GIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTL 419

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII-EMS 477
           M A  + G   + L+L  +M+ L+ EV  ++F + I    ++  + +A +   ++  +  
Sbjct: 420 MDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFG 479

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMML--------------------------------- 504
             P+ A Y  +  GLCK  ++ AA  L                                 
Sbjct: 480 LQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEAL 539

Query: 505 -VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
            +RD +  +        Y   +    +  + +K    L EM  E   P+EV+C  ++   
Sbjct: 540 ALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDEVLCIGVLKKH 599

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANT 590
            + G ++EA  + + L + +LLT  N 
Sbjct: 600 YELGCIDEAVGLQSYLMKHQLLTSDNN 626



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 114/484 (23%), Positives = 215/484 (44%), Gaps = 25/484 (5%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQV-PELMDSQGRIAEMLEILEKM--RRNLCKP 201
           + G+ H   SY  +A+ L    ++  A+ +  E++ S+  + E  ++ +++   RN+C P
Sbjct: 3   RNGFNHTIESYCIVAHILFCARMYYDANSILREIVLSKAELEE-CDVFDELWSTRNVCVP 61

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
               + A+  VL     L+   + + +MK+  V     +   L+    K G+       F
Sbjct: 62  GFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFF 121

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           ++M   G       Y ++I+ +  EG +  A  L +++   G   D   YNS+I G  +V
Sbjct: 122 KDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKV 181

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK--LKFSVAAD 379
            + D     FE        PD  T N L+ C  + G++    +   +M++  LK +V + 
Sbjct: 182 GRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVS- 240

Query: 380 LEKFFEFLVG---KEERIMMALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALY 433
               +  LV    KE+ +  A+  + +++  G+  VP    Y  L+ A  +IG +  A  
Sbjct: 241 ----YSTLVDAFCKEDMMQQAIKFYVDMRRVGH--VPNEFTYTSLVDANCKIGNLSDAFR 294

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           L  +M  + +E N ++++  I    ++  + EA +   K++    +P++A+YN L  G  
Sbjct: 295 LANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFV 354

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           K   +D A+ L+ +  G     P    Y   I  +C   + E    V+NEM + G   N 
Sbjct: 355 KAKNMDRALELLNELKGR-GIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANT 413

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
           +I + ++    K G   E   +   ++E   L    T+V   +LI+ + K    LV   +
Sbjct: 414 LIYTTLMDAYFKSGNPTEGLHLLEEMQE---LDHEVTVVTFCVLIDGLCKNK--LVSKAI 468

Query: 614 KFFG 617
            +FG
Sbjct: 469 DYFG 472



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 20/150 (13%)

Query: 134 LASKFFHWAGKQK---GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEI 190
           L SK   + G+     G + N A Y A+   L + N  +AA  + E M  +G +      
Sbjct: 463 LVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLV------ 516

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
                     PD  AYT+++     + N+   L + ++M +  ++ D++AY +L+ G  +
Sbjct: 517 ----------PDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQ 566

Query: 251 GGRVVRGHELFREMKENGILIDRAI-YGVL 279
             ++ +      EM    IL D  +  GVL
Sbjct: 567 CNQLQKARSFLEEMIGEEILPDEVLCIGVL 596


>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 195/413 (47%), Gaps = 11/413 (2%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           E+L++MR     P    YTA+I     + N    LR+ +EM    +  +V+   +L+ G 
Sbjct: 276 ELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGY 335

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C  G V    +LF E+ E G++ D  I+ VLI G    G + KA +L   +   G + ++
Sbjct: 336 CVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNV 395

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
            I NS++ G       + AY LF+  V+  +  +  T N LL    E+G+++    L  +
Sbjct: 396 FIVNSLLEGFHEQNLLEHAYGLFDEAVEHGIT-NVVTYNILLKWLGELGKVNEACNLWEK 454

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYNILMGALLEI 425
           M  +   +   L  +   ++G  ++  M  A  + + +  +G   +   Y +L+    + 
Sbjct: 455 M--VSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKK 512

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G+ ++A  +F +M   N+     +F+  I    ++G + E  +  N  I+   V +   Y
Sbjct: 513 GDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITY 572

Query: 486 NCLTKGLCKIGEIDAAMMLVRD-CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           N +  G  K G +D+A++  R+ C   ++  P    Y   I  +C+S +    +E+ ++M
Sbjct: 573 NSIIDGFFKEGAVDSALLAYREMCESGIS--PDVITYTSLIDGLCKSNKIGLALEMHSDM 630

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             +G   + V  SA+I G CK   +E A K FT L +  L    NT+VY+ ++
Sbjct: 631 KYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGL--TPNTVVYNSMI 681



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 113/471 (23%), Positives = 212/471 (45%), Gaps = 28/471 (5%)

Query: 165 NNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLR 224
           NNL  A  +   + D++    EM+E      R +   D +    ++R    E   +   +
Sbjct: 189 NNLLTAMVRRNMVCDARQLYDEMVE------RGI-YGDCYTLHVVMRACMKEGKFEEVEK 241

Query: 225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
            ++E K   +E D  AY  L+  +C+   +    EL +EM+E G +  +  Y  +I   V
Sbjct: 242 FFKEAKGRGLEVDAAAYSILVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACV 301

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
            +G   +A  L  ++V  G   ++ +  S++ G C +   + A +LF+  V+  + PD  
Sbjct: 302 KQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVV 361

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLK-----FSVAADLEKFFEFLVGKEERIMMALD 399
             + L+  C+++G M+  ++L  +M+ +      F V + LE F E     +  +  A  
Sbjct: 362 IFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHE-----QNLLEHAYG 416

Query: 400 VFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           +F+E    G ++V  YNIL+  L E+G+V +A  L+ KM    +  + +S++  I  H +
Sbjct: 417 LFDEAVEHGITNVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCK 476

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTE 518
            G + +A      I+E    P+   Y  L  G  K G+ + A ++    +  N+A  PT+
Sbjct: 477 KGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIA--PTD 534

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
             +   I  + ++G   +  + LN   ++G     +  ++II G  K G ++ A   +  
Sbjct: 535 HTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYRE 594

Query: 579 LRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKL 629
           + E  +    + I Y  ++    K     L L       + S +K KG KL
Sbjct: 595 MCESGI--SPDVITYTSLIDGLCKSNKIGLALE------MHSDMKYKGMKL 637



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 136/317 (42%), Gaps = 40/317 (12%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR++E  + L    +         Y ++I     E  +D+ L  + EM +  +  DV+ Y
Sbjct: 548 GRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITY 607

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI GLCK  ++    E+  +MK  G+ +D   Y  LI+G      +  A     +L+D
Sbjct: 608 TSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLD 667

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   +  +YNS+I G   +   + A  L +                             
Sbjct: 668 IGLTPNTVVYNSMISGFIHLNNMEAALNLHQ----------------------------- 698

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
                   E +K  V  DL+ +   + G  KE ++ +ALD++ E+  K     + +Y +L
Sbjct: 699 --------EMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVL 750

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L   G+++ A  +  +M G N+  + L ++I I  +   G++ EA   H+++++   
Sbjct: 751 INGLSNNGQLENASKILKEMDGNNITPSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGL 810

Query: 479 VPSVAAYNCLTKGLCKI 495
           VP    Y+ L  G  K+
Sbjct: 811 VPDDTTYDILVNGKLKV 827



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/397 (20%), Positives = 186/397 (46%), Gaps = 10/397 (2%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +V  Y  +++ L     ++    +WE+M    +   +++Y  LI+G CK G + + + + 
Sbjct: 428 NVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSML 487

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           + + E G+  +   Y +LI+G   +G   +A  + + ++ +        +N++I GL + 
Sbjct: 488 KSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKT 547

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            +  +        ++        T N ++    + G +D+   LLA  E  +  ++ D+ 
Sbjct: 548 GRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDS--ALLAYREMCESGISPDVI 605

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
            +   + G  K  +I +AL++  ++K KG    V  Y+ L+    ++ +++ A   F ++
Sbjct: 606 TYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTEL 665

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP-SVAAYNCLTKGLCKIGE 497
             + L  N++ ++  I   +   ++  A   H ++I+ ++VP  +  Y  +  GL K G+
Sbjct: 666 LDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIK-NKVPCDLQVYTSIIGGLLKEGK 724

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           +  A+ L  + L      P    Y + I  +  +G+ E   ++L EM      P+ ++ +
Sbjct: 725 LSLALDLYSEMLSKDIV-PDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSVLVYN 783

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
            +I+G  + G L+EA ++   + ++ L+ +  T  YD
Sbjct: 784 ILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTT--YD 818



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 92/190 (48%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G +   L    +M  +   PDV  YT++I  L     +   L +  +MK   ++ DV+A
Sbjct: 582 EGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVA 641

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK   +    + F E+ + G+  +  +Y  +I G +    +  A +L ++++
Sbjct: 642 YSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMI 701

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +    DL +Y SIIGGL +  +   A  L+   +  D+ PD      L+   +  G+++
Sbjct: 702 KNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLE 761

Query: 361 NFFKLLAQME 370
           N  K+L +M+
Sbjct: 762 NASKILKEMD 771



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 130/299 (43%), Gaps = 11/299 (3%)

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G+ +D  ++N ++    RV +   A + F   ++ DL P    +N LL        + + 
Sbjct: 145 GFESDSRVFNYLLKSFVRVNKITDAVECFRTMLEHDLVPWVPIMNNLLTAMVRRNMVCDA 204

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILM 419
            +L  +M  ++  +  D       +    KE +       F+E KG+G       Y+IL+
Sbjct: 205 RQLYDEM--VERGIYGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILV 262

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            A+    ++  A  L  +MR      +  +++  I   V+ G+ +EA    ++++ +   
Sbjct: 263 QAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLP 322

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILHVCRSGEAEKII 538
            +V     L KG C +G+++ A+ L  + + G V   P    +++ I    + G+ EK  
Sbjct: 323 MNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVV--PDVVIFSVLINGCSKVGDMEKAY 380

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           E+   M   G  PN  I ++++ G  +   LE A  +F    E  +    N + Y+ +L
Sbjct: 381 ELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGI---TNVVTYNILL 436


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 171/386 (44%), Gaps = 2/386 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ +  + +  M  +  KP++  Y  ++    +   ++A   +   MK+  +E D   
Sbjct: 234 EGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFT 293

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI G+CK GR+    ++F EM + G+     IY  LI+G   +G +  A     +++
Sbjct: 294 YGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEML 353

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G    +  YNS+I  L   ++ D+A  + +   +  ++PD  T N L+          
Sbjct: 354 KKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAK 413

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILM 419
             F L  +M                 ++ K+ R+  A D+F+++  +G      ++N L+
Sbjct: 414 KAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALI 473

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
                   VK A  L   M  + +  + ++F+  +Q H   G + EA E  +++      
Sbjct: 474 DGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIK 533

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P   ++N L  G  + G+I  A   VR+ + +    PT   Y   +  +C++ E +   E
Sbjct: 534 PDHISFNTLISGYSRRGDIKDAFR-VRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEE 592

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCK 565
           +L EM  +G  P++     +I G+ K
Sbjct: 593 LLKEMVSKGMTPDDTTYFTLIEGIAK 618



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 160/370 (43%), Gaps = 33/370 (8%)

Query: 147 GYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           G K N  +YN +   YC                  S GR+     IL  M+R   +PD F
Sbjct: 251 GVKPNIVTYNTIVHGYC------------------SSGRVEAADAILTTMKRQKIEPDSF 292

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y ++I  +  +  L+   +++EEM +  +    + Y TLI G C  G +        EM
Sbjct: 293 TYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEM 352

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            + GI    + Y  LI  L  E +  +A  ++K++ + G   D   YN +I G CR    
Sbjct: 353 LKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANA 412

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM---DNFFKLLAQMEKLKFSVAADLE 381
            KA+ L +  +   + P   T   LL   ++  RM   D+ FK +     L  ++     
Sbjct: 413 KKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAI----- 467

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVP----IYNILMGALLEIGEVKKALYLFGK 437
             F  L+            FE LK      VP     +N +M      G+V++A  LF +
Sbjct: 468 -MFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDE 526

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M+   ++ + +SF+  I  +   GDI +A    N++++    P+V  YN L +GLCK  E
Sbjct: 527 MKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQE 586

Query: 498 IDAAMMLVRD 507
            D A  L+++
Sbjct: 587 GDLAEELLKE 596



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 160/384 (41%), Gaps = 37/384 (9%)

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
           +M R   K  V+ +  MI VL  E  L         M+   V+ +++ Y T++ G C  G
Sbjct: 211 EMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSG 270

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
           RV     +   MK   I  D   YG LI G+  +G++ +A  + +++V  G R    IYN
Sbjct: 271 RVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYN 330

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
           ++I G C     D A    +  ++  ++P  ST N L+                      
Sbjct: 331 TLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLI---------------------- 368

Query: 373 KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKA 431
                          +  E+R   A  + +E++ KG S   I YNIL+         KKA
Sbjct: 369 -------------HALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKA 415

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
             L  +M    ++    +++  +    +   + EA +   KI     +P    +N L  G
Sbjct: 416 FLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDG 475

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
            C    +  A  L++D +  +   P E  +   +   CR G+ E+  E+ +EM + G  P
Sbjct: 476 HCSNSNVKGAFELLKD-MDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKP 534

Query: 552 NEVICSAIISGMCKHGTLEEARKV 575
           + +  + +ISG  + G +++A +V
Sbjct: 535 DHISFNTLISGYSRRGDIKDAFRV 558



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 97/204 (47%), Gaps = 16/204 (7%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G K    +Y +L + LS+ N  + AD + + + S+G +                PD   +
Sbjct: 426 GIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVL----------------PDAIMF 469

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
            A+I    +  N+     + ++M +  V  D + + T++ G C+ G+V    ELF EMK 
Sbjct: 470 NALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKR 529

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            GI  D   +  LI G    G +  A  +  +++D+G+   +  YN+++ GLC+ ++ D 
Sbjct: 530 RGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDL 589

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLL 350
           A +L +  V   + PD +T   L+
Sbjct: 590 AEELLKEMVSKGMTPDDTTYFTLI 613


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/551 (20%), Positives = 226/551 (41%), Gaps = 48/551 (8%)

Query: 80   QLQRHLSPIARFITDAF-RKNQFQWGPQVVT---ELSKLRRVTPDLVAEVLKVENNPTLA 135
            +L    S I   + D + R+   ++ P  +    + + L          +L  E    +A
Sbjct: 665  ELSLESSEICSLVLDTYLRQPHLRFSPSKLNLDMDAASLTHEQAISAVALLASEEGSMVA 724

Query: 136  SKFFHWAGKQKGYKHNFASYNALAYCL-SRNNLFRAADQVPELMD---SQGRIAEMLEIL 191
              FF+WA     +++    Y      L  + NL RA + V  ++      G++ E ++++
Sbjct: 725  LSFFYWAVGFPKFRYFMRLYIVCTMSLVGKCNLERAHEVVECMVGVFAEIGKLKEAVDMI 784

Query: 192  EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
              MR             +I V A  R ++    V++EM    V  D   Y  +I+G C+ 
Sbjct: 785  LDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRN 844

Query: 252  GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
            G V+       EM E G ++D A   ++I     +  V +A      +   G   +L  Y
Sbjct: 845  GNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINY 904

Query: 312  NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
            +S+I GLC+     +A++L E  V++   P+  T   L+    + G  +  F+L  ++ +
Sbjct: 905  SSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIR 964

Query: 372  LKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG--------------------- 408
               +   ++  +   + G  KEE++  A  +FE +K +G                     
Sbjct: 965  SD-NYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNF 1023

Query: 409  ---------------YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
                           + +   YN ++  L + G  ++A  L        +E + ++++I 
Sbjct: 1024 SKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTIL 1083

Query: 454  IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
            I    +  D+ +A    NK+ ++   P +  Y  L    C+   +  +  L  + +  + 
Sbjct: 1084 ISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVI-KLG 1142

Query: 514  SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
              PT+  Y   I   CR  +    ++   +M+  GC P+ +   A+ISG+CK   L+EAR
Sbjct: 1143 LAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEAR 1202

Query: 574  KVFTNLRERKL 584
            +++  + ++ L
Sbjct: 1203 QLYDTMIDKGL 1213



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 79/393 (20%), Positives = 161/393 (40%), Gaps = 36/393 (9%)

Query: 201  PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
            P++  Y++MI  L    ++     + EEM K+  + +V  + +LI GLCK G   R   L
Sbjct: 899  PNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRL 958

Query: 261  FREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
            F ++ + +    +   Y  +I G   E K+ +A  L + + + G   +   Y ++I G C
Sbjct: 959  FLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHC 1018

Query: 320  RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
            +   F KAY+L E+   +   P+  T N ++    + GR +  FKLL             
Sbjct: 1019 KAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLN------------ 1066

Query: 380  LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
                     G + +I        E  G  Y+      IL+    +  ++ +AL    KM 
Sbjct: 1067 --------TGFQNQI--------EADGVTYT------ILISEQCKRADMNQALVFLNKMF 1104

Query: 440  GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
             +  + +   ++  I        + ++ +  +++I++   P+   Y  +  G C+  ++ 
Sbjct: 1105 KVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVS 1164

Query: 500  AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
             A+   +  + +    P    Y   I  +C+    ++  ++ + M  +G  P EV    +
Sbjct: 1165 LAVKFFQK-MSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTL 1223

Query: 560  ISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
                CK      A  +   L ++  +   +T++
Sbjct: 1224 TYEYCKTEDFASAMVILERLNKKLWIRTVHTLI 1256



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 23/219 (10%)

Query: 144  KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQG------------------- 182
            K++G   N  +Y  L   +C + N  F  A ++ ELM ++G                   
Sbjct: 999  KEQGLVPNTNTYTTLIDGHCKAGN--FSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRG 1056

Query: 183  RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
            R  E  ++L    +N  + D   YT +I       +++  L    +M K   + D+  Y 
Sbjct: 1057 RAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYT 1116

Query: 243  TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            TLI   C+   +    +LF E+ + G+   +  Y  +I G   E KV  A    + + D 
Sbjct: 1117 TLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDH 1176

Query: 303  GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
            G   D   Y ++I GLC+  + D+A +L++  +   L+P
Sbjct: 1177 GCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSP 1215



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 110/252 (43%), Gaps = 7/252 (2%)

Query: 354  AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM-MALDVFEELKGKG-YSS 411
            AE+G++     ++  M      +   +      LV  E R++  A +VF+E+  +G Y  
Sbjct: 772  AEIGKLKEAVDMILDMRNQGLVLTTRVMNRI-ILVAAEMRLVEYAGNVFDEMSARGVYPD 830

Query: 412  VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
               Y  ++      G V +A     +M      V++ + ++ I    E   +  A    +
Sbjct: 831  SCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFH 890

Query: 472  KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
            K+ +M   P++  Y+ +  GLCK G +  A  L+ + + N    P  + +   I  +C+ 
Sbjct: 891  KVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKN-GWKPNVYTHTSLIHGLCKK 949

Query: 532  GEAEKIIEV-LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            G  E+   + L  +  +   PN    +A+ISG CK   L  A  +F  ++E+ L+   NT
Sbjct: 950  GWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNT 1009

Query: 591  IVYDEILIEHMK 602
              Y  ++  H K
Sbjct: 1010 --YTTLIDGHCK 1019



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 135/363 (37%), Gaps = 32/363 (8%)

Query: 103  WGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AY 160
            W P V T  S +  +      E          A + F    +   YK N  +Y A+   Y
Sbjct: 932  WKPNVYTHTSLIHGLCKKGWTE---------RAFRLFLKLIRSDNYKPNVHTYTAMISGY 982

Query: 161  C----LSRNNLF--RAADQ--VPE------LMDSQ---GRIAEMLEILEKMRRNLCKPDV 203
            C    LSR  +   R  +Q  VP       L+D     G  ++  E++E M      P+ 
Sbjct: 983  CKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNT 1042

Query: 204  FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
              Y +++  L      +   ++     ++ +EAD + Y  LI   CK   + +      +
Sbjct: 1043 CTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNK 1102

Query: 264  MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
            M + G   D  +Y  LI     +  +  +  L  +++  G       Y S+I G CR K+
Sbjct: 1103 MFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKK 1162

Query: 324  FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
               A K F+       APD  +   L+    +  R+D   +L   M     S        
Sbjct: 1163 VSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVT 1222

Query: 384  FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
              +   K E    A+ + E L  K +  +   + L+  L    +V  A   F K+  L+ 
Sbjct: 1223 LTYEYCKTEDFASAMVILERLNKKLW--IRTVHTLIRKLCCEKKVALAALFFHKL--LDK 1278

Query: 444  EVN 446
            EVN
Sbjct: 1279 EVN 1281


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 162/392 (41%), Gaps = 36/392 (9%)

Query: 180 SQGRIAEMLEIL-EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           S+GR+ E   ++ E M    C PD+F Y  +I  L  +  L +   +  EM+    E +V
Sbjct: 383 SRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNV 442

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + Y  LI   CK GR+     +  EM   G+ ++   Y  LI  L  + KV  A ++  D
Sbjct: 443 ITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGD 502

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +   G + D+  +NS+I GLC+V +F++A  L++  + + +  +  T N L+      G 
Sbjct: 503 MSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGA 562

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL 418
           M    KL+  M                                   +G     +  YN L
Sbjct: 563 MQEALKLVNDML---------------------------------FRGCPLDDIT-YNGL 588

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + AL   G ++K L LF  M    L  N++S +I I     +G+I  A E    +I    
Sbjct: 589 IKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGL 648

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P +  YN L  GLCK G    A+ L  D L      P    Y   I   C+ G  +   
Sbjct: 649 TPDIVTYNSLINGLCKTGRAQEALNLF-DKLQVEGICPDAITYNTLISWHCKEGMFDDAH 707

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
            +L+     G  PNEV    ++S   K G  E
Sbjct: 708 LLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 739



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 119/528 (22%), Positives = 226/528 (42%), Gaps = 58/528 (10%)

Query: 112 SKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA 171
           + L R+TP  + ++L++  +   + + F WAG QKGY H F  Y  L   L     F+  
Sbjct: 89  TSLTRITPYQLCKLLELPLDVPTSMELFQWAGTQKGYCHMFDVYYMLIDKLGAAGEFKTT 148

Query: 172 DQVPELMDSQGRI-------------------AEMLEILEKMRRNL-CKPDVFAYTAMIR 211
           D +   M  +G +                    +   +L  MR    C+P   +Y  ++ 
Sbjct: 149 DALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLD 208

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
           VL A         V+ EM    +   V  +  ++  LC    V     L ++M  +G + 
Sbjct: 209 VLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVP 268

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           +  +Y  LI  L   G+V +   LL++++  G   D+  +N  I GLC++ +  +A KL 
Sbjct: 269 NAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLV 328

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL------------------------- 366
           +  +     P+  T   L+     MG++D    LL                         
Sbjct: 329 DRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLD 388

Query: 367 ---AQMEKLKFSVAA--DLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
              A M +   SV    D+  +   ++G  K+  ++ A ++  E++ KG   +V  Y IL
Sbjct: 389 EAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTIL 448

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G +++A  +  +M G  L +N++ ++  I    +   + +A      +     
Sbjct: 449 IDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGC 508

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVCRSGEAEK 536
            P +  +N L  GLCK+ + + A+ L +D L  G +A+  T   Y   I    R G  ++
Sbjct: 509 KPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTIT---YNTLIHAFLRRGAMQE 565

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
            ++++N+M   GCP +++  + +I  +C+ G +E+   +F ++  + L
Sbjct: 566 ALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGL 613



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 116/497 (23%), Positives = 224/497 (45%), Gaps = 14/497 (2%)

Query: 116 RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVP 175
           +V P++  E+L    +PT+ +  F    K     +   S  AL   ++R+     A    
Sbjct: 217 KVVPNVFYEMLSKGISPTVYT--FGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQ 274

Query: 176 ELMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
            L+ +    GR+ E+L++LE+M    C PDV  +   I  L     +    ++ + M   
Sbjct: 275 TLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLR 334

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
               +   Y  L+ GLC+ G+V     L  ++    +++    +  LI G V  G++ +A
Sbjct: 335 GFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVL----FNTLINGYVSRGRLDEA 390

Query: 293 CDLLKD-LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
             ++ + ++  G   D+  YN++I GLC+      A +L          P+  T   L+ 
Sbjct: 391 KAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILID 450

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS- 410
              + GR++    +L +M     ++ A         + K+E++  AL++F ++  KG   
Sbjct: 451 RFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKP 510

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            +  +N L+  L ++ + ++AL L+  M    +  N+++++  I   +  G + EA +  
Sbjct: 511 DIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLV 570

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
           N ++          YN L K LC+ G I+  + L  D +      P      + I  +CR
Sbjct: 571 NDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSK-GLNPNNISCNILINGLCR 629

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +G  +  +E L +M   G  P+ V  +++I+G+CK G  +EA  +F  L+   +  +A  
Sbjct: 630 TGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDA-- 687

Query: 591 IVYDEILIEHMKKKTAD 607
           I Y+ ++  H K+   D
Sbjct: 688 ITYNTLISWHCKEGMFD 704



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/434 (22%), Positives = 182/434 (41%), Gaps = 58/434 (13%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           +G+  N  +Y  L + L R                 G++ E   +L K+      P+V  
Sbjct: 334 RGFTPNSFTYGVLMHGLCR----------------MGKVDEARMLLNKVP----NPNVVL 373

Query: 206 YTAMIRVLAAERNLDACLRVWEE-MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
           +  +I    +   LD    V  E M       D+  Y TLI+GLCK G +V   EL  EM
Sbjct: 374 FNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEM 433

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           +  G   +   Y +LI+    EG++ +A ++L ++   G   +   YN +I  LC+ ++ 
Sbjct: 434 QIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKV 493

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
             A  +F         PD  T N L+                                  
Sbjct: 494 QDALNMFGDMSSKGCKPDIFTFNSLI---------------------------------- 519

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNL 443
            F + K  +   AL +++++  +G  +  I YN L+ A L  G +++AL L   M     
Sbjct: 520 -FGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGC 578

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
            ++ ++++  I+    +G+I +       ++     P+  + N L  GLC+ G I  A+ 
Sbjct: 579 PLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALE 638

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
            +RD +    + P    Y   I  +C++G A++ + + +++  EG  P+ +  + +IS  
Sbjct: 639 FLRDMIHRGLT-PDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWH 697

Query: 564 CKHGTLEEARKVFT 577
           CK G  ++A  + +
Sbjct: 698 CKEGMFDDAHLLLS 711



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 168/395 (42%), Gaps = 22/395 (5%)

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI  L   G       L  +MK+ GI+   +++ ++++     G  G+A  LL D+
Sbjct: 131 VYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDM 190

Query: 300 -----VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
                 +  +R+   + + ++ G C     +  Y++    +   ++P   T   ++    
Sbjct: 191 RGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEM----LSKGISPTVYTFGVVMKALC 246

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVP 413
            +  +D+   LL  M +      A + +     + K  R+   L + EE+   G    V 
Sbjct: 247 LVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVN 306

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            +N  +  L ++  + +A  L  +M       NS ++ + +      G + EA    NK+
Sbjct: 307 TFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKV 366

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
                 P+V  +N L  G    G +D A  ++ + + +V  GP  F Y   IL +C+ G 
Sbjct: 367 PN----PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGY 422

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
                E++NEM  +GC PN +  + +I   CK G LEEAR V   +  + L    N + Y
Sbjct: 423 LVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGL--ALNAVGY 480

Query: 594 DEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
           + ++    K +    V   L  FG    + +KGCK
Sbjct: 481 NCLISALCKDEK---VQDALNMFG---DMSSKGCK 509


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/451 (24%), Positives = 198/451 (43%), Gaps = 43/451 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G+ ++ L++ ++M      P+   Y  MI       +L+A  R+ ++M +D  + +V+ 
Sbjct: 208 SGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVT 267

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV------------GE-- 286
           Y  L+ GLC+ GR+     L  EM    +L D   Y +L +GL             GE  
Sbjct: 268 YNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESL 327

Query: 287 ---------------------GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
                                GKV KA  +L+ LV +G      IYN++I G C+V+   
Sbjct: 328 KKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQ 387

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
            A+ +FE      + PD  T N L+    +M  +     L+ +ME  K  V   +E F  
Sbjct: 388 GAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEME--KSGVDPSVETFNT 445

Query: 386 FL--VGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            +   G+  ++     V  +++ KG  S+V  +  ++ A  + G++ +A+ +   M   +
Sbjct: 446 LIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKD 505

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           +  N+  ++  I  ++ESG   +A     K+       S+  YN L KGLCK  +ID A 
Sbjct: 506 VVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAE 565

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            L+ + L N    P    Y   I   C  G+ ++ +E+L EM +    P       ++S 
Sbjct: 566 ELIYN-LTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSA 624

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
           +   G + +   ++ ++  + +  E ++ +Y
Sbjct: 625 LGSAGRVHDMECLYQHMVHKNV--EPSSSIY 653



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 97/449 (21%), Positives = 181/449 (40%), Gaps = 44/449 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD--LVEAD 237
           S GR A++      +     +PD FA+   ++   A  +LD  L +   M +       D
Sbjct: 135 SVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPD 194

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
             +Y  +I GL + G+     ++F EM + G+  ++  Y  +I+G V  G +     L  
Sbjct: 195 AFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRD 254

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            ++  G + ++  YN ++ GLCR  + D+   L +      + PD  T + L       G
Sbjct: 255 QMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTG 314

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYN 416
                  L  +  K    + A         + K+ ++  A  V E L   G   +  IYN
Sbjct: 315 DSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYN 374

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+    ++ +++ A  +F +M+  ++                                 
Sbjct: 375 TLINGYCQVRDLQGAFSIFEQMKSRHIR-------------------------------- 402

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P    YN L  GLCK+  I  A  LV + +      P+   +   I    R+G+ EK
Sbjct: 403 ---PDHITYNALINGLCKMEMITEAEDLVME-MEKSGVDPSVETFNTLIDAYGRAGQLEK 458

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
              VL++M  +G   N +   +++   CK+G + EA  +  ++  + ++  A   VY+ I
Sbjct: 459 CFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQ--VYNSI 516

Query: 597 L---IEHMKKKTADLVLSGLKFFGLESKL 622
           +   IE    + A L++  +K  G+ + +
Sbjct: 517 IDAYIESGGTEQAFLLVEKMKSSGVSASI 545



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 5/183 (2%)

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI-- 473
           N+L+ +LL +G        FG +       ++ +++ A+Q  V +GD+ EA     ++  
Sbjct: 127 NLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAMLRRMGR 186

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            E +  P   +YN +  GL + G+   A+  V D + +    P +  Y   I    + G+
Sbjct: 187 SEGAPPPDAFSYNVVIAGLWRSGKGSDALK-VFDEMVDRGVAPNQITYNTMIDGHVKGGD 245

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT--I 591
            E    + ++M Q+G  PN V  + ++SG+C+ G ++E R +   +    +L +  T  I
Sbjct: 246 LEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSI 305

Query: 592 VYD 594
           ++D
Sbjct: 306 LFD 308


>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
          Length = 595

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/425 (23%), Positives = 192/425 (45%), Gaps = 16/425 (3%)

Query: 195 RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
           R  +  P     + ++R  ++       LR  + +       D+  + +L+  L + G +
Sbjct: 90  RHRIPPPSALLLSKLVRRFSSPAEAAGFLR--DSLASGAPAPDISIFNSLLTALGRAGNL 147

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA--DLGIYN 312
               ELF  M++  +  D   YG+L+ GL   G VG A  +L  +   G     D+ I N
Sbjct: 148 RGMTELFTSMRDASVKPDVVTYGILLNGLCKSGHVGDALKVLDRMSSPGSDVCPDIAILN 207

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQD--DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           +++ GLC++ +  +A    +  ++     AP+  T N L      +G +    K++A+ME
Sbjct: 208 TVVDGLCKIGRLQQAIIFVDERMRHVHGCAPNAVTYNCLADAFCRVGDIGMACKIVARME 267

Query: 371 KLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKG---KGYSSVPIYNILMGALLEI 425
           K    VA ++      + G  +  R+  AL+ F E +    +   +   Y+ L  A L  
Sbjct: 268 K--EGVAPNVITMNTIIGGLCRVGRVGAALEFFREKRTVWPEARGNAVTYSTLASAFLHC 325

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
             V  A+ LF +M       +++ +   I    ++G +L+AC     + +        AY
Sbjct: 326 NNVDMAMELFHEMADHGHRPDAVMYFTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAY 385

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           N L  G C+  ++  A  L+ +  G V   P  + Y   +  +C++G+   + E+L  M 
Sbjct: 386 NILIGGFCRKKKLHEAYELLEEMKG-VGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMI 444

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKT 605
            +GC P+ V    ++ G CK G  +EA ++F ++ E ++  + NT++Y+ ++    K + 
Sbjct: 445 DDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARI--QPNTVIYNTLIDFLCKSRE 502

Query: 606 ADLVL 610
            D+ +
Sbjct: 503 VDVAI 507



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 101/444 (22%), Positives = 194/444 (43%), Gaps = 36/444 (8%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD+  + +++  L    NL     ++  M+   V+ DV+ Y  L+ GLCK G V    ++
Sbjct: 129 PDISIFNSLLTALGRAGNLRGMTELFTSMRDASVKPDVVTYGILLNGLCKSGHVGDALKV 188

Query: 261 FREMKENG--ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS--GYRADLGIYNSIIG 316
              M   G  +  D AI   +++GL   G++ +A   + + +    G   +   YN +  
Sbjct: 189 LDRMSSPGSDVCPDIAILNTVVDGLCKIGRLQQAIIFVDERMRHVHGCAPNAVTYNCLAD 248

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL---------A 367
             CRV     A K+     ++ +AP+  T+N ++     +GR+    +           A
Sbjct: 249 AFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVGAALEFFREKRTVWPEA 308

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
           +   + +S  A       FL      + MA+++F E+   G+     +Y  ++  L + G
Sbjct: 309 RGNAVTYSTLAS-----AFL--HCNNVDMAMELFHEMADHGHRPDAVMYFTMISGLTQAG 361

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            +  A      M+    ++++ +++I I        + EA E   ++  +   P V  YN
Sbjct: 362 RLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYN 421

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNV---ASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            L  GLCK G+  A    V + LG++      P+   +   +   C++G+ ++ + +   
Sbjct: 422 TLLSGLCKAGDFSA----VDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRS 477

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           M +    PN VI + +I  +CK   ++ A K+F  +RE+ +   AN   Y+ +L     K
Sbjct: 478 MDEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREKNV--PANVTTYNALLKGLQDK 535

Query: 604 KTADLVLSGLKFFGLESKLKAKGC 627
           K A+      K F L  +++ + C
Sbjct: 536 KMAE------KAFELMDRMREERC 553



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 121/523 (23%), Positives = 207/523 (39%), Gaps = 71/523 (13%)

Query: 110 ELSKLRRVTPD---LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNN 166
            L+   R+ P    L++++++  ++P  A+ F   +        + + +N+L   L R  
Sbjct: 86  SLAARHRIPPPSALLLSKLVRRFSSPAEAAGFLRDSLASGAPAPDISIFNSLLTALGR-- 143

Query: 167 LFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVW 226
                          G +  M E+   MR    KPDV  Y  ++  L    ++   L+V 
Sbjct: 144 --------------AGNLRGMTELFTSMRDASVKPDVVTYGILLNGLCKSGHVGDALKVL 189

Query: 227 EEMKK--DLVEADVMAYVTLIMGLCKGGRVVRGHELFRE-MKE-NGILIDRAIYGVLIEG 282
           + M      V  D+    T++ GLCK GR+ +      E M+  +G   +   Y  L + 
Sbjct: 190 DRMSSPGSDVCPDIAILNTVVDGLCKIGRLQQAIIFVDERMRHVHGCAPNAVTYNCLADA 249

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV--------------------- 321
               G +G AC ++  +   G   ++   N+IIGGLCRV                     
Sbjct: 250 FCRVGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVGAALEFFREKRTVWPEAR 309

Query: 322 ----------------KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
                              D A +LF         PD      ++    + GR+ +    
Sbjct: 310 GNAVTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTMISGLTQAGRLLDACTT 369

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
            A M+K  F + A   K +  L+G   +++++  A ++ EE+KG G    V  YN L+  
Sbjct: 370 AASMKKAGFKLDA---KAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSG 426

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L + G+      L G M     + + ++F   +  + ++G   EA      + E    P+
Sbjct: 427 LCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPN 486

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
              YN L   LCK  E+D A+ L  +    NV +  T +   L  L       AEK  E+
Sbjct: 487 TVIYNTLIDFLCKSREVDVAIKLFDEMREKNVPANVTTYNALLKGLQ--DKKMAEKAFEL 544

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
           ++ M +E C PN V    ++  + + G  E   K F   R++K
Sbjct: 545 MDRMREERCTPNYVTVDVLMEWLPEIGETERL-KCFMQQRDQK 586


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 180/419 (42%), Gaps = 40/419 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G   + L +   M ++  +PD + +  ++      + +D+  +++EEM+      +V+ Y
Sbjct: 103 GYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITY 162

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI  +CK G V +  ++F +MK  G   +   Y  +I+GL   G V KA  L +++  
Sbjct: 163 SILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTS 222

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G  A   +YNS+I GL R  + D A KLF   +   L PD  T   L+      GR   
Sbjct: 223 EGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASE 282

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
             ++  +   +  ++  +L       + K +R+  A ++F EL+  G    V  +N LM 
Sbjct: 283 ARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMD 342

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L + G +  A  L G M+                                        P
Sbjct: 343 GLCKSGRIHDAFILLGDMK-----------------------------------RAGCTP 367

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  YN L  GL K G ++ A  L+ + + ++   P    Y   I   C+ G  E  + +
Sbjct: 368 DVTVYNTLIDGLRKSGRVEEAGQLLLE-MQSLGYEPDVVTYNTLIDESCKGGRIEDALRL 426

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL--LTEANTIVYDEIL 597
             E++ +G   N V  + I++G+C  G ++EA K+F  +++  +  + + + + Y  +L
Sbjct: 427 FEEISAKGFA-NTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLL 484



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/408 (22%), Positives = 176/408 (43%), Gaps = 14/408 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P V A T ++ +L   R  +    V  E++K         ++ L  G    G + +  E 
Sbjct: 17  PSVRACTTLVEMLGIARRFNEAEEVLAEVEKSRYILQPRIFIELARGYASAGLLEKSVEA 76

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
            + M+ +   +  + Y  LI+  V  G   KA  + + +  SG R D   +N ++    +
Sbjct: 77  LKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKK 136

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK-----FS 375
            K+ D  +KLFE     + +P+  T + L+    + G ++   K+   M+        F+
Sbjct: 137 AKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFT 196

Query: 376 VAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYL 434
             + ++      +GK   +  A  +FEE+  +G  ++  +YN L+  L   G    A  L
Sbjct: 197 YTSMIDG-----LGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKL 251

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           F +M    L+ + ++F+  +     +G   EA     +  ++     V  YN L   LCK
Sbjct: 252 FREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCK 311

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
              +D A  +  + L      P  + +   +  +C+SG       +L +M + GC P+  
Sbjct: 312 SKRLDEAWEIFGE-LEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVT 370

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
           + + +I G+ K G +EEA ++   L  + L  E + + Y+ ++ E  K
Sbjct: 371 VYNTLIDGLRKSGRVEEAGQLL--LEMQSLGYEPDVVTYNTLIDESCK 416


>gi|224115398|ref|XP_002317023.1| predicted protein [Populus trichocarpa]
 gi|222860088|gb|EEE97635.1| predicted protein [Populus trichocarpa]
          Length = 455

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 187/406 (46%), Gaps = 39/406 (9%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           ++E M  +   PD  +YT ++  L    N+   +++ E+M+++    + + Y +L+ GLC
Sbjct: 7   VMEMMIESGIIPDAASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNSLVRGLC 66

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
             G + +  +L  ++   G++ +   Y  L+E    E  V +A  LL +++  G++ +L 
Sbjct: 67  MHGNLNQSLQLLDKLMWKGLVPNEFTYSFLLEAAYKERGVNEAMKLLDEIIAKGWQPNLV 126

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            YN ++ GLC+  + ++A + F         P+  + N +L      GR +   +LLA+M
Sbjct: 127 SYNVLLTGLCKEGRTEEAIRFFRDLPSKGFNPNVVSYNIILRSLCHEGRWEEANQLLAEM 186

Query: 370 EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVK 429
           +                    EER                 S+  YNIL+G+L   G ++
Sbjct: 187 D-------------------SEER---------------SPSLVTYNILIGSLAFHGRIE 212

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
            A  +  +M   + + ++ +++  I    + G +    +C +++I     P+   +N + 
Sbjct: 213 HAFEVLDEMVRASFKPSATTYNPIIAHLCKEGKLDLVIKCLDQMIHHRCNPNEGTFNAIA 272

Query: 490 KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
             LCK G +  A  ++++ LGN     T   Y   I  +CR G      ++L EMT+ G 
Sbjct: 273 V-LCKQGRVPEAFSIIQN-LGNKQRSSTHDFYKGVITSLCRKGNTYPAFQLLYEMTKFGF 330

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVFTNLRE---RKLLTEANTIV 592
            P+    S++I G+C  G L+EA ++F  L E   R +L   N ++
Sbjct: 331 VPDPYTYSSLIRGLCIEGMLDEALEIFRLLEENDYRPILDNFNALI 376



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/443 (22%), Positives = 179/443 (40%), Gaps = 54/443 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ GY  N  +YN+L   L                   G + + L++L+K+      P+ 
Sbjct: 47  EENGYPTNTVTYNSLVRGLCM----------------HGNLNQSLQLLDKLMWKGLVPNE 90

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           F Y+ ++     ER ++  +++ +E+     + ++++Y  L+ GLCK GR       FR+
Sbjct: 91  FTYSFLLEAAYKERGVNEAMKLLDEIIAKGWQPNLVSYNVLLTGLCKEGRTEEAIRFFRD 150

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +   G   +   Y +++  L  EG+  +A  LL ++        L  YN +IG L    +
Sbjct: 151 LPSKGFNPNVVSYNIILRSLCHEGRWEEANQLLAEMDSEERSPSLVTYNILIGSLAFHGR 210

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            + A+++ +  V+    P  +T NP++    + G++D   K L QM   + +        
Sbjct: 211 IEHAFEVLDEMVRASFKPSATTYNPIIAHLCKEGKLDLVIKCLDQMIHHRCNPNEGTFNA 270

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSV-PIYNILMGALLEIGEVKKALYLFGKMRGLN 442
              L  K+ R+  A  + + L  K  SS    Y  ++ +L   G    A  L  +M    
Sbjct: 271 IAVLC-KQGRVPEAFSIIQNLGNKQRSSTHDFYKGVITSLCRKGNTYPAFQLLYEMTKFG 329

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
                                               VP    Y+ L +GLC  G +D A+
Sbjct: 330 F-----------------------------------VPDPYTYSSLIRGLCIEGMLDEAL 354

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            + R  L      P    +   IL  C+SG  +  +++L  M ++G  PNE   + I+ G
Sbjct: 355 EIFR-LLEENDYRPILDNFNALILGFCKSGRTDLSLDILEMMVEKGYTPNETTYTIIVEG 413

Query: 563 MCKHGTLEEARKVFTNLRERKLL 585
           +      E A +V   L  R+++
Sbjct: 414 IAHEEEKELAAEVLKELLLRQVM 436



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 139/297 (46%), Gaps = 9/297 (3%)

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           KA  +++ +++SG   D   Y  ++  LC+      A +L E   ++    +  T N L+
Sbjct: 3   KATRVMEMMIESGIIPDAASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNSLV 62

Query: 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGK 407
                 G ++   +LL   +KL +      E  + FL+    KE  +  A+ + +E+  K
Sbjct: 63  RGLCMHGNLNQSLQLL---DKLMWKGLVPNEFTYSFLLEAAYKERGVNEAMKLLDEIIAK 119

Query: 408 GYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           G+  ++  YN+L+  L + G  ++A+  F  +       N +S++I ++     G   EA
Sbjct: 120 GWQPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFNPNVVSYNIILRSLCHEGRWEEA 179

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
            +   ++    + PS+  YN L   L   G I+ A   V D +   +  P+   Y   I 
Sbjct: 180 NQLLAEMDSEERSPSLVTYNILIGSLAFHGRIEHAFE-VLDEMVRASFKPSATTYNPIIA 238

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
           H+C+ G+ + +I+ L++M    C PNE   +A I+ +CK G + EA  +  NL  ++
Sbjct: 239 HLCKEGKLDLVIKCLDQMIHHRCNPNEGTFNA-IAVLCKQGRVPEAFSIIQNLGNKQ 294



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 3/170 (1%)

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           +KKA  +   M    +  ++ S++  +    + G+I  A +   K+ E     +   YN 
Sbjct: 1   MKKATRVMEMMIESGIIPDAASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNS 60

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L +GLC  G ++ ++ L+ D L      P EF Y+  +    +     + +++L+E+  +
Sbjct: 61  LVRGLCMHGNLNQSLQLL-DKLMWKGLVPNEFTYSFLLEAAYKERGVNEAMKLLDEIIAK 119

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           G  PN V  + +++G+CK G  EEA + F +L  +      N + Y+ IL
Sbjct: 120 GWQPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGF--NPNVVSYNIIL 167


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 190/410 (46%), Gaps = 11/410 (2%)

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M R+   P+V+ Y  ++R L A   L+  + V  +M+      + + Y TL+   C+ G 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 254 VVRGHELFREMKENG-ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
           +     +   M+E G    +   +  ++ GL   G++  A  +  ++V  G   D+  YN
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
           +++ G C+V    ++  +F    Q  L PD  T   L+    + G ++    L+AQM + 
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 373 KFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEV 428
              +    E  F  L+    K+  +  AL   EE++  G   SV  YN L+    ++G +
Sbjct: 181 GLRMN---EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRM 237

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
             A  L  +M    ++ + +++S  I  + + G++  A + + K+++   +P    Y+ L
Sbjct: 238 DLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSL 297

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
            +GLC+   ++ A  L  + L  +   P EF Y   I   C+ G  EK + + +EM ++G
Sbjct: 298 IRGLCEEKRLNDACELFENML-QLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKG 356

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
             P+ V  S +I+G+ K    +EA ++   L     + +   I YD +++
Sbjct: 357 VLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPD--NIKYDALML 404



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 111/481 (23%), Positives = 195/481 (40%), Gaps = 55/481 (11%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCK--- 200
           +  G   N  +YN L     R      A++V  LM  +G     L     M   LCK   
Sbjct: 37  RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGR 96

Query: 201 -----------------PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
                            PDV +Y  ++        L   L V+ EM +  +  DV+ + +
Sbjct: 97  MEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTS 156

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           LI   CK G + +   L  +M+E G+ ++   +  LI+G   +G +  A   ++++   G
Sbjct: 157 LIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG 216

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            +  +  YN++I G C++ + D A +L        + PD  T + ++    ++G +D+ F
Sbjct: 217 IQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAF 276

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
           +L  +M  LK  V  D   +   + G  +E+R+  A ++FE +   G       Y  L+ 
Sbjct: 277 QLNQKM--LKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLID 334

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G V+KAL L  +M    +  + +++S+ I    +S    EA     K+     VP
Sbjct: 335 GHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVP 394

Query: 481 SVAAYNCLT---------------KGLCKIGEIDAAMMLVRDCL-------GNVASGPTE 518
               Y+ L                KG C  G +  A  + +  L       G+V      
Sbjct: 395 DNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSV------ 448

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
             Y++ I   CR G   K +    +M + G  PN     +++ G+ + G + EA     +
Sbjct: 449 --YSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQD 506

Query: 579 L 579
           L
Sbjct: 507 L 507



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 160/372 (43%), Gaps = 57/372 (15%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+    E++ +M     KPDV  Y+ +I       NLD+  ++ ++M K  V  D + Y
Sbjct: 235 GRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITY 294

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI GLC+  R+    ELF  M + G+  D   Y  LI+G   EG V KA  L  +++ 
Sbjct: 295 SSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIR 354

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  Y+ +I GL +  +  +A++L      +D  PD    + L++CC+       
Sbjct: 355 KGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCS------- 407

Query: 362 FFKLLAQMEKLKF-SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
                    K +F SV A L+ F                    +KG           LM 
Sbjct: 408 ---------KAEFKSVVALLKGFC-------------------MKG-----------LM- 427

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
                   K+A  ++  M   N +++   +SI I  H   G++ +A   H +++     P
Sbjct: 428 --------KEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSP 479

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +  +   L +GL + G +  A   ++D L        E   AL  L+  + G  + +I+V
Sbjct: 480 NSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNR-KEGNVDALIDV 538

Query: 541 LNEMTQEGCPPN 552
           L  M ++G  P+
Sbjct: 539 LCGMARDGLLPS 550



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 4/198 (2%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           +V  YNIL+ AL   G +++A+ + G MRG     N+++++  +     +G++  A    
Sbjct: 9   NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 68

Query: 471 NKIIEMSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
           + + E     P++  +N +  GLCK G ++ A   V D +      P    Y   +   C
Sbjct: 69  SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARK-VFDEMVREGLAPDVVSYNTLLSGYC 127

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           + G   + + V +EMTQ G  P+ V  +++I   CK G LE+A  +   +RER L    N
Sbjct: 128 KVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGL--RMN 185

Query: 590 TIVYDEILIEHMKKKTAD 607
            + +  ++    KK   D
Sbjct: 186 EVTFTALIDGFCKKGFLD 203



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 104/218 (47%), Gaps = 5/218 (2%)

Query: 393 RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL-NLEVNSLSF 450
           R+  A+ V  +++G G + +   YN L+ A    GE+  A  +   MR   N + N ++F
Sbjct: 25  RLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTF 84

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +  +    ++G +  A +  ++++     P V +YN L  G CK+G +  ++ +  + + 
Sbjct: 85  NSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSE-MT 143

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
                P    +   I   C++G  E+ + ++ +M + G   NEV  +A+I G CK G L+
Sbjct: 144 QRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLD 203

Query: 571 EARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADL 608
           +A      +  RK   + + + Y+ ++  + K    DL
Sbjct: 204 DALLAVEEM--RKCGIQPSVVCYNALINGYCKLGRMDL 239


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/476 (22%), Positives = 213/476 (44%), Gaps = 45/476 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + +   E+M+   C+PDV  Y A+I        L   L  + EMK + ++ +V++Y
Sbjct: 179 GRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSY 238

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+   CK G + +  + + +M+  G++ +   Y  LI+     G +  A  L  +++ 
Sbjct: 239 STLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQ 298

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++  Y ++I GLC  ++  +A +LF       + P+ ++ N L+    +   MD 
Sbjct: 299 VGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDR 358

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNIL 418
             +LL +++     +  DL  +  F+ G    E+I  A  V  E+K  G  ++  IY  L
Sbjct: 359 ALELLNELKGR--GIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTL 416

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII-EMS 477
           M A  + G   + L+L  +M+ L++EV  ++F + I    ++  + +A +  N+I  +  
Sbjct: 417 MDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFG 476

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMML--------------------------------- 504
              + A +  +  GLCK  +++AA  L                                 
Sbjct: 477 LQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEAL 536

Query: 505 -VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
            +RD +  +        Y   +  +    + +K    L EM  EG  P+EV+C +++   
Sbjct: 537 ALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKH 596

Query: 564 CKHGTLEEARKVFTNLRERKLLTEAN-----TIVYDEILIEHMKKKTADLVLSGLK 614
            + G ++EA ++ + L + +LLT  N      I  D+ L+   + +  +  +S L+
Sbjct: 597 YELGCIDEAVELQSYLMKHQLLTSDNDNALPNIYSDQNLVSSREHEEQETRISNLQ 652



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 175/400 (43%), Gaps = 5/400 (1%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           + M  +G +     + E+M+     PD   Y +MI        LD  +  +EEMK    E
Sbjct: 138 DCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCE 197

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            DV+ Y  LI   CK G++  G E +REMK NG+  +   Y  L++    EG + +A   
Sbjct: 198 PDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKF 257

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
             D+   G   +   Y S+I   C++     A++L    +Q  +  +  T   L+    +
Sbjct: 258 YVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCD 317

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SV 412
             RM    +L  +M+     V  +L  +   + G  K + +  AL++  ELKG+G    +
Sbjct: 318 AERMKEAEELFGKMDTA--GVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDL 375

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
            +Y   +  L  + +++ A  +  +M+   ++ NSL ++  +  + +SG+  E     ++
Sbjct: 376 LLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDE 435

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           + E+    +V  +  L  GLCK   +  A+        +         +   I  +C+  
Sbjct: 436 MKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDN 495

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           + E    +  +M Q+G  P+    ++++ G  K G + EA
Sbjct: 496 QVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEA 535



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 102/461 (22%), Positives = 196/461 (42%), Gaps = 44/461 (9%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           + G+KH+  SY  +A+ L    ++  A+ V + M       ++ ++L   R N+C P   
Sbjct: 3   RNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWSTR-NVCVPGFG 61

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            + A+  VL     L+  ++ + +MK+  V     +   L+    K G+       F++M
Sbjct: 62  VFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDM 121

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              G       Y ++I+ +  EG V  A  L +++   G   D   YNS+I G  +V + 
Sbjct: 122 IGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRL 181

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           D     FE        PD  T N L+ C  + G++                         
Sbjct: 182 DDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLP------------------------ 217

Query: 385 EFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
                      + L+ + E+KG G   +V  Y+ L+ A  + G +++A+  +  MR + L
Sbjct: 218 -----------IGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL 266

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             N  +++  I  + + G++ +A    N+++++    +V  Y  L  GLC    +  A  
Sbjct: 267 VPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEE 326

Query: 504 LV--RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           L    D  G +   P    Y   I    ++   ++ +E+LNE+   G  P+ ++    I 
Sbjct: 327 LFGKMDTAGVI---PNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIW 383

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
           G+C    +E A+ V   ++E  +  +AN+++Y  ++  + K
Sbjct: 384 GLCSLEKIEAAKVVMNEMKECGI--KANSLIYTTLMDAYFK 422



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 4/199 (2%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD+    G   E L +L++M+    +  V  +  +I  L   + +   +  +  +  D 
Sbjct: 416 LMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDF 475

Query: 234 -VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            ++A+   +  +I GLCK  +V     LF +M + G++ DR  Y  L++G   +G V +A
Sbjct: 476 GLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEA 535

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
             L   + + G + DL  Y S++ GL    Q  KA    E  + + + PD      +L  
Sbjct: 536 LALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKK 595

Query: 353 CAEMGRMDNFFKLLAQMEK 371
             E+G +D   +L + + K
Sbjct: 596 HYELGCIDEAVELQSYLMK 614


>gi|356495305|ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Glycine max]
          Length = 618

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/455 (23%), Positives = 188/455 (41%), Gaps = 57/455 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K +G   N   YN L + L RN                G++     ++ +M      P+ 
Sbjct: 202 KSRGVAPNTVVYNTLLHALCRN----------------GKVGRARNLMNEME----DPND 241

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             +  +I     E N    L + E+        DV++   ++  LC  GR +   E+   
Sbjct: 242 VTFNILISGYCKEGNSVQALVLLEKSFSMGFVPDVVSVTKVLEILCNAGRTMEAAEVLER 301

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           ++  G L+D   Y  LI+G  G GKV      LK + + G   ++  YN +I G      
Sbjct: 302 VESMGGLLDVVAYNTLIKGFCGAGKVKVGLHFLKQMENKGCLPNVDTYNVLISGFSESGM 361

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            D A  LF     D +  +F T + L+       R+++ F +L  ME             
Sbjct: 362 LDLALDLFNDMKTDGIKWNFVTFDTLIRGLCSEERIEDGFSILELME------------- 408

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
                              E K      +  YN ++  LL+     ++     KM   NL
Sbjct: 409 -------------------ESKEGSRGHISPYNSIIYGLLKKNGFDESAEFLTKMG--NL 447

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
              ++  S+ I  H + G I +A   ++++I+   +PS+  YNCL  G  K G +  A+ 
Sbjct: 448 FPRAVDRSLMILEHCKKGAIEDAKRVYDQMIDEGGIPSILVYNCLVHGFSKQGNVREAVE 507

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L+ + + N    P    +   I   CR G+ E  ++++ ++T  GC PN    S +I  +
Sbjct: 508 LMNEMIAN-NCFPIPSTFNAVITGFCRQGKVESALKLVEDITARGCVPNTETYSPLIDVL 566

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           C++G L++A +VF  + ++ +L   +  +++ +L+
Sbjct: 567 CRNGDLQKAMQVFMQMVDKGIL--PDLFIWNSLLL 599



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 125/517 (24%), Positives = 230/517 (44%), Gaps = 64/517 (12%)

Query: 93  TDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNF 152
           T   R+ QFQ      T  S     + + V++++  + + + A ++F WA     + H+ 
Sbjct: 16  THFLRRFQFQ------THSSSSSAPSQEHVSQLILDQKSASEALEYFRWASTVPNFVHSQ 69

Query: 153 ASYNALAYCLSRNNLFRAADQVPELMDSQ--------------------GR---IAEMLE 189
           ++Y AL + L     FR  D V +L+D                      GR      +++
Sbjct: 70  STYRALIHKLCT---FRRFDTVKQLLDEMPHSLGAPPGDDIFITIIRGLGRARMTRTVIK 126

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVW-EEMKKDLVEADVMAYVTLIMGL 248
           +L+ + +    P +  + +++ VL  E ++D     + + M    VE D   +  L+ GL
Sbjct: 127 VLDLVYKFHGSPSLKIFNSILDVLVKE-DIDMAREFYRKSMMASGVEGDDYTFGILMKGL 185

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C   R+  G +L + +K  G+  +  +Y  L+  L   GKVG+A +L+ ++ D     D+
Sbjct: 186 CLTNRIGEGFKLLQLIKSRGVAPNTVVYNTLLHALCRNGKVGRARNLMNEMEDPN---DV 242

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             +N +I G C+     +A  L E +      PD  +V  +L      GR     ++L +
Sbjct: 243 -TFNILISGYCKEGNSVQALVLLEKSFSMGFVPDVVSVTKVLEILCNAGRTMEAAEVLER 301

Query: 369 MEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEI 425
           +E +      D+  +   + G     ++ + L   ++++ KG   +V  YN+L+    E 
Sbjct: 302 VESM--GGLLDVVAYNTLIKGFCGAGKVKVGLHFLKQMENKGCLPNVDTYNVLISGFSES 359

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--C---HVESG-DILEACECHNKIIEMSQV 479
           G +  AL LF  M+   ++ N ++F   I+  C    +E G  ILE       ++E S+ 
Sbjct: 360 GMLDLALDLFNDMKTDGIKWNFVTFDTLIRGLCSEERIEDGFSILE-------LMEESKE 412

Query: 480 PS---VAAYNCLTKGLCKIGEID-AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
            S   ++ YN +  GL K    D +A  L +  +GN+   P     +L IL  C+ G  E
Sbjct: 413 GSRGHISPYNSIIYGLLKKNGFDESAEFLTK--MGNLF--PRAVDRSLMILEHCKKGAIE 468

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
               V ++M  EG  P+ ++ + ++ G  K G + EA
Sbjct: 469 DAKRVYDQMIDEGGIPSILVYNCLVHGFSKQGNVREA 505



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 18/211 (8%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G + + + YN++ Y L + N F   D+  E +   G +                P   
Sbjct: 411 KEGSRGHISPYNSIIYGLLKKNGF---DESAEFLTKMGNLF---------------PRAV 452

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
             + MI     +  ++   RV+++M  +     ++ Y  L+ G  K G V    EL  EM
Sbjct: 453 DRSLMILEHCKKGAIEDAKRVYDQMIDEGGIPSILVYNCLVHGFSKQGNVREAVELMNEM 512

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
             N      + +  +I G   +GKV  A  L++D+   G   +   Y+ +I  LCR    
Sbjct: 513 IANNCFPIPSTFNAVITGFCRQGKVESALKLVEDITARGCVPNTETYSPLIDVLCRNGDL 572

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
            KA ++F   V   + PD    N LL+  ++
Sbjct: 573 QKAMQVFMQMVDKGILPDLFIWNSLLLSLSQ 603



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 86/209 (41%), Gaps = 17/209 (8%)

Query: 84  HLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLK-VENNPTLASKFFHWA 142
           H+SP    I    +KN F    + +T++  L     D    +L+  +      +K  +  
Sbjct: 417 HISPYNSIIYGLLKKNGFDESAEFLTKMGNLFPRAVDRSLMILEHCKKGAIEDAKRVYDQ 476

Query: 143 GKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
              +G   +   YN L +  S+                QG + E +E++ +M  N C P 
Sbjct: 477 MIDEGGIPSILVYNCLVHGFSK----------------QGNVREAVELMNEMIANNCFPI 520

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
              + A+I     +  +++ L++ E++       +   Y  LI  LC+ G + +  ++F 
Sbjct: 521 PSTFNAVITGFCRQGKVESALKLVEDITARGCVPNTETYSPLIDVLCRNGDLQKAMQVFM 580

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGK 291
           +M + GIL D  I+  L+  L  E    K
Sbjct: 581 QMVDKGILPDLFIWNSLLLSLSQERHFSK 609


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 187/440 (42%), Gaps = 57/440 (12%)

Query: 136 SKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEK 193
           +K F  + +  G K N  +YN +   YC                  S+GR+     +L+ 
Sbjct: 255 AKDFIGSMENLGVKPNVVTYNTVIHGYC------------------SRGRVEGARMVLDI 296

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M+    +PD + Y ++I  +     L+    + E+MK+  +    + Y TLI G C  G 
Sbjct: 297 MKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGD 356

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           +V+      EM    IL   + Y +LI  L  EGK+ +A  ++KD+ DSG   D   YN 
Sbjct: 357 LVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNI 416

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           +I G CR     KA+ L +  +   + P   T   L+                       
Sbjct: 417 LINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLI----------------------- 453

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
                       +++ K  R+  A D+FE++  +G S  + ++N L+      G + +A 
Sbjct: 454 ------------YVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAF 501

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            L  +M   N+  + ++++  +Q     G + EA E   ++      P   +YN L  G 
Sbjct: 502 ALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGY 561

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
            K G+I+ A   +RD + ++   PT   Y   I  +C++ + +   E+L EM  +G  P+
Sbjct: 562 SKRGDINDAFT-IRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPD 620

Query: 553 EVICSAIISGMCKHGTLEEA 572
           +    ++I G+ K     EA
Sbjct: 621 DSTYFSLIEGIGKVDDSSEA 640



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 167/394 (42%), Gaps = 8/394 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  +  E  + M+     P +  + AM+ +       +    ++ EM +  +++ V  + 
Sbjct: 181 RGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFN 240

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            +I  LCK G++ +  +    M+  G+  +   Y  +I G    G+V  A  +L  + + 
Sbjct: 241 IMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNR 300

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D   Y S+I G+C+  + ++A  + E   +  L P   T N L+      G +   
Sbjct: 301 GVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKA 360

Query: 363 FKLLAQMEK---LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNIL 418
           F    +M +   L      +L     FL GK +    A  + +++   G     I YNIL
Sbjct: 361 FGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDE---ADGMIKDMGDSGIVPDSITYNIL 417

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +      G  KKA  L  +M    ++   ++++  I    +   +  A +   KII    
Sbjct: 418 INGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGA 477

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P +  +N L  G C  G +D A  L+++ +      P E  Y   +   CR G+ E+  
Sbjct: 478 SPDLIMFNALIDGHCANGNLDRAFALLKE-MDKRNIVPDEVTYNTLMQGRCREGKVEEAR 536

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           E+L EM + G  P+ +  + +ISG  K G + +A
Sbjct: 537 ELLKEMKRRGIRPDHISYNTLISGYSKRGDINDA 570



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 111/549 (20%), Positives = 226/549 (41%), Gaps = 40/549 (7%)

Query: 65  PNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLV-A 123
           PN  T SP            L    + + D+ + +Q+     +   LS      P L+ A
Sbjct: 46  PNASTDSP------------LVITHQSLLDSIQSSQWHLIKHLAPNLS------PSLISA 87

Query: 124 EVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL----MD 179
            +L +     LA +F    G        F   +    CL+   + R+      L      
Sbjct: 88  TLLSLHKKSDLALQFVTHIG--------FKGLDIKTKCLAVAVVSRSPSPKSTLHLLKQT 139

Query: 180 SQGRIAEMLEILEKM---RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
            + R+A + ++  ++   R  L       +  +IR     +  D     ++ MK+  V  
Sbjct: 140 IESRVAGVKDVFHELAITRDRLGTKSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVP 199

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
            +  +  ++    K  +      L+ EM    I      + ++I  L  EGK+ KA D +
Sbjct: 200 KIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFI 259

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             + + G + ++  YN++I G C   + + A  + ++     + PD  T   L+    + 
Sbjct: 260 GSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKG 319

Query: 357 GRMDNFFKLLAQMEKLK-FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPI 414
           G+++    +L +M+++     A       +    K + ++ A    +E+  +    +V  
Sbjct: 320 GKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGD-LVKAFGYRDEMVRRAILPTVST 378

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YN+L+ AL   G++ +A  +   M    +  +S++++I I  +   G+  +A   H+++I
Sbjct: 379 YNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMI 438

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                P++  Y  L   L K   + AA  L    +   AS P    +   I   C +G  
Sbjct: 439 SKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGAS-PDLIMFNALIDGHCANGNL 497

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           ++   +L EM +    P+EV  + ++ G C+ G +EEAR++   ++ R +    + I Y+
Sbjct: 498 DRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGI--RPDHISYN 555

Query: 595 EILIEHMKK 603
            ++  + K+
Sbjct: 556 TLISGYSKR 564


>gi|357127090|ref|XP_003565218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Brachypodium distachyon]
          Length = 886

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/478 (23%), Positives = 211/478 (44%), Gaps = 34/478 (7%)

Query: 151 NFASYNALAYCLSRNNLFRAADQ-VPELMDS------------------QGRIAEMLEIL 191
           N  +YNAL   + +N +F  AD+ V E+ D                   +G + + L +L
Sbjct: 336 NIFAYNALLNNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGMMDDALCML 395

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           ++MR    +  V+ Y ++I     + +LD  +    EM +  +  +  +Y  +I GLC+ 
Sbjct: 396 DRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRK 455

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           G +    EL R+M E G+  +   +  LI G     K+ +A  L   + +S    +   +
Sbjct: 456 GDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEVTF 515

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N++I G C V    KA++L++  +   L PD  T   L+             + +A +E 
Sbjct: 516 NAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGLCLTDGASKAKEFVADLEN 575

Query: 372 -----LKFSVAADLEKFFEFLVGKEERIMMALDVFEELK-GKGYSSVPIYNILMGALLEI 425
                 KFS+ A L  F      +E R+  A  V+ E+    G   +  + I++ A L+ 
Sbjct: 576 NCSVLNKFSLTALLHGFC-----REGRLTEAYHVWNEMAMWGGKLDLISFTIIVYAALKQ 630

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
            + +K+  LF +M+   +  +++  +  I  + + G++++A  C +++I    +P+   Y
Sbjct: 631 HDSEKSCVLFREMKEKGVRPDNVFHTCMINMYSKEGNMVQALNCWDEMIADGHLPNTVTY 690

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
             L   LCK   + +A +L ++ L +    P  + +   + +    G  E   ++   M 
Sbjct: 691 TALVNNLCKSWHLSSAELLCKEMLAS-HFLPNSYTFNCFLDYFATEGNLETAKDLYFAML 749

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           Q G   N V  + +I G CK G ++EA  + +   E     +   I Y  ++ E  KK
Sbjct: 750 Q-GFLANIVSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDC--ISYSTVIHELCKK 804



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 172/396 (43%), Gaps = 12/396 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD    + ++  L   R       +++ M    V  D   Y   I   C+   +     L
Sbjct: 160 PDQHTASQILFSLVKIRQFALARHLFDGMLHSGVLLDEYVYTAGIRAYCEVRNLDGAKGL 219

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              M++ G  +    Y VLI GL    +V +A D+   ++  G  AD     +++ G CR
Sbjct: 220 VARMQDEGDKVSAVPYNVLIYGLCKNQRVREAVDVKNSMLARGVAADEVTCRTLVYGFCR 279

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK-----FS 375
            ++ D A ++     +    P  +  + +L    + GR++  F+L  Q+ +L+     F+
Sbjct: 280 TEELDMALEMTGDMARLGFVPSEANCSFMLDGLRKKGRVEEAFRLACQLGELRMVPNIFA 339

Query: 376 VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYL 434
             A L       + K      A  +  E+  KG     + Y IL+ +L + G +  AL +
Sbjct: 340 YNALLNN-----MCKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGMMDDALCM 394

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
             +MR   + +    ++  I C  +  D+  A    ++++E+   P+ A+Y+ +  GLC+
Sbjct: 395 LDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCR 454

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
            G++  A+ L R  +         + +   I   C++ + ++   + N+MT+    PNEV
Sbjct: 455 KGDLSGAVELHRK-MAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEV 513

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             +A+I G C  G + +A +++  +  R L  +  T
Sbjct: 514 TFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYT 549



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 105/477 (22%), Positives = 203/477 (42%), Gaps = 58/477 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++KG +     YN+L  C  + +         +L  + G ++EM+EI          P+ 
Sbjct: 399 REKGVRMTVYPYNSLINCCCKKD---------DLDMAMGFLSEMVEIG-------LTPNA 442

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            +Y+ +I  L  + +L   + +  +M +  V  +   +  LI G CK  ++     LF +
Sbjct: 443 ASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNK 502

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M E+ +  +   +  +IEG    G + KA  L   ++  G   D   Y S+I GLC    
Sbjct: 503 MTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGLCLTDG 562

Query: 324 FDKAYKLFEVTVQDDLA--PDFSTVNPLLVCCAEMGRMDNFFKLLAQM-------EKLKF 374
             KA K F   ++++ +    FS    L   C E GR+   + +  +M       + + F
Sbjct: 563 ASKA-KEFVADLENNCSVLNKFSLTALLHGFCRE-GRLTEAYHVWNEMAMWGGKLDLISF 620

Query: 375 SVAA-------DLEK----FFEF-----------------LVGKEERIMMALDVFEELKG 406
           ++         D EK    F E                  +  KE  ++ AL+ ++E+  
Sbjct: 621 TIIVYAALKQHDSEKSCVLFREMKEKGVRPDNVFHTCMINMYSKEGNMVQALNCWDEMIA 680

Query: 407 KGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G+  +   Y  L+  L +   +  A  L  +M   +   NS +F+  +      G++  
Sbjct: 681 DGHLPNTVTYTALVNNLCKSWHLSSAELLCKEMLASHFLPNSYTFNCFLDYFATEGNLET 740

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A + +  +++   + ++ + N L KG CK+G+I  A+ L+     N    P    Y+  I
Sbjct: 741 AKDLYFAMLQ-GFLANIVSVNTLIKGFCKVGQIQEAIDLISRSTEN-GFFPDCISYSTVI 798

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             +C+ G+  + IE+ NEM  +G  P+ V  + +I     HG  ++   ++ ++ ++
Sbjct: 799 HELCKKGDINEAIELWNEMLYKGVKPDIVAYNILIRWCNIHGESDKCLGIYIDMVKK 855



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 99/458 (21%), Positives = 177/458 (38%), Gaps = 54/458 (11%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAE----------------- 186
           + +G K +   YN L Y L +N   R A  V   M ++G  A+                 
Sbjct: 224 QDEGDKVSAVPYNVLIYGLCKNQRVREAVDVKNSMLARGVAADEVTCRTLVYGFCRTEEL 283

Query: 187 --MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
              LE+   M R    P     + M+  L  +  ++   R+  ++ +  +  ++ AY  L
Sbjct: 284 DMALEMTGDMARLGFVPSEANCSFMLDGLRKKGRVEEAFRLACQLGELRMVPNIFAYNAL 343

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           +  +CK G       L  EM + G+  +   Y +LI  L   G +  A  +L  + + G 
Sbjct: 344 LNNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGMMDDALCMLDRMREKGV 403

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           R  +  YNS+I   C+    D A       V+  L P+ ++ +P++      G +    +
Sbjct: 404 RMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAVE 463

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE 424
           L  +M +                                 KG  +++   +  L+    +
Sbjct: 464 LHRKMAE---------------------------------KGVAWNTY-TFTALINGFCK 489

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
             ++ +A  LF KM   NLE N ++F+  I+ +   GDI +A + +++++     P    
Sbjct: 490 AKKMDEASRLFNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYT 549

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y  L  GLC       A   V D L N  S   +F     +   CR G   +   V NEM
Sbjct: 550 YRSLISGLCLTDGASKAKEFVAD-LENNCSVLNKFSLTALLHGFCREGRLTEAYHVWNEM 608

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
              G   + +  + I+    K    E++  +F  ++E+
Sbjct: 609 AMWGGKLDLISFTIIVYAALKQHDSEKSCVLFREMKEK 646



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 100/445 (22%), Positives = 181/445 (40%), Gaps = 39/445 (8%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           D + YTA IR     RNLD    +   M+ +  +   + Y  LI GLCK  RV    ++ 
Sbjct: 196 DEYVYTAGIRAYCEVRNLDGAKGLVARMQDEGDKVSAVPYNVLIYGLCKNQRVREAVDVK 255

Query: 262 REMKENGILIDRA-----IYGV------------------------------LIEGLVGE 286
             M   G+  D       +YG                               +++GL  +
Sbjct: 256 NSMLARGVAADEVTCRTLVYGFCRTEELDMALEMTGDMARLGFVPSEANCSFMLDGLRKK 315

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
           G+V +A  L   L +     ++  YN+++  +C+   F +A +L        L P+  T 
Sbjct: 316 GRVEEAFRLACQLGELRMVPNIFAYNALLNNMCKNGMFSEADRLVNEMSDKGLEPNEVTY 375

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKG 406
             L+    + G MD+   +L +M +    +             K++ + MA+    E+  
Sbjct: 376 AILIHSLCKRGMMDDALCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVE 435

Query: 407 KGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G + +   Y+ ++  L   G++  A+ L  KM    +  N+ +F+  I    ++  + E
Sbjct: 436 IGLTPNAASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDE 495

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A    NK+ E +  P+   +N + +G C +G+I  A  L  D +      P  + Y   I
Sbjct: 496 ASRLFNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLY-DQMMCRGLTPDNYTYRSLI 554

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER--K 583
             +C +  A K  E + ++       N+   +A++ G C+ G L EA  V+  +     K
Sbjct: 555 SGLCLTDGASKAKEFVADLENNCSVLNKFSLTALLHGFCREGRLTEAYHVWNEMAMWGGK 614

Query: 584 LLTEANTIVYDEILIEHMKKKTADL 608
           L   + TI+    L +H  +K+  L
Sbjct: 615 LDLISFTIIVYAALKQHDSEKSCVL 639



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 137/344 (39%), Gaps = 39/344 (11%)

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           + +G   D    + I+  L +++QF  A  LF+  +   +  D       +    E+  +
Sbjct: 154 LSAGIAPDQHTASQILFSLVKIRQFALARHLFDGMLHSGVLLDEYVYTAGIRAYCEVRNL 213

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIY-NIL 418
           D    L+A+M+     V+A       + + K +R+  A+DV   +  +G ++  +    L
Sbjct: 214 DGAKGLVARMQDEGDKVSAVPYNVLIYGLCKNQRVREAVDVKNSMLARGVAADEVTCRTL 273

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +       E+  AL + G M  L    +  + S  +    + G + EA     ++ E+  
Sbjct: 274 VYGFCRTEELDMALEMTGDMARLGFVPSEANCSFMLDGLRKKGRVEEAFRLACQLGELRM 333

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG------ 532
           VP++ AYN L   +CK G    A  LV + + +    P E  YA+ I  +C+ G      
Sbjct: 334 VPNIFAYNALLNNMCKNGMFSEADRLVNE-MSDKGLEPNEVTYAILIHSLCKRGMMDDAL 392

Query: 533 -----------------------------EAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
                                        + +  +  L+EM + G  PN    S +I+G+
Sbjct: 393 CMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGL 452

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           C+ G L  A ++   + E+ +    NT  +  ++    K K  D
Sbjct: 453 CRKGDLSGAVELHRKMAEKGV--AWNTYTFTALINGFCKAKKMD 494



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 1/158 (0%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+ + +   +   A E NL+    ++  M +  + A++++  TLI G CK G++    +L
Sbjct: 720 PNSYTFNCFLDYFATEGNLETAKDLYFAMLQGFL-ANIVSVNTLIKGFCKVGQIQEAIDL 778

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
                ENG   D   Y  +I  L  +G + +A +L  +++  G + D+  YN +I     
Sbjct: 779 ISRSTENGFFPDCISYSTVIHELCKKGDINEAIELWNEMLYKGVKPDIVAYNILIRWCNI 838

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
             + DK   ++   V+  + P++ T   L V  + M +
Sbjct: 839 HGESDKCLGIYIDMVKKGVQPNWHTHRALFVGTSLMSK 876


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 181/413 (43%), Gaps = 14/413 (3%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
            E MR +  KP+V  YT++I   A  R+++  +   EEM    ++ +   + ++I G   
Sbjct: 40  FEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYAS 99

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
            G        F + K   ++    +Y  +++     G +     LL  + + G++ +LG+
Sbjct: 100 AGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGL 159

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           Y +++ G   ++  +K    F       L+P  +T   ++    + G M     +L +M+
Sbjct: 160 YTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMD 219

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVK 429
           K   S    +         +      A  V+E++   G    + IYNIL+ A  + G + 
Sbjct: 220 KHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMD 279

Query: 430 KALYLFGKMRGLNLEVNSL-----SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
           KAL +       N+E N L     +++  +  +V+ G+I +A E  ++I      P V +
Sbjct: 280 KALGVLE-----NIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVS 334

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN L  GL K  +++ A +++ + L N    P E  Y        R+G+ EK   +   M
Sbjct: 335 YNSLLSGLAKARQMENARLMLNEMLANGVV-PNERSYTALTEGYARAGDVEKAFGMFQRM 393

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            +E    + V   A++   CK G ++ A +VF  + +  L  + N I Y  +L
Sbjct: 394 KKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGL--KHNRITYCTML 444



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 177/407 (43%), Gaps = 14/407 (3%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
            EK +     P    Y ++++      N++    +  +M+++  + ++  Y T++ G  +
Sbjct: 110 FEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAE 169

Query: 251 GGRVVRGHE----LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
               +R  E     F  +K  G+    A YG +++     G + KA D+L+++   G   
Sbjct: 170 ----IRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSP 225

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           +  IY  I+ G  R   F  A+K++E  V   L PD    N L+    + GRMD    +L
Sbjct: 226 NKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVL 285

Query: 367 AQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
             +E  +  +   +E +   L G  K   I  AL+VF+ +K  G    V  YN L+  L 
Sbjct: 286 ENIEANR--LLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLA 343

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           +  +++ A  +  +M    +  N  S++   + +  +GD+ +A     ++ + +    + 
Sbjct: 344 KARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIV 403

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           AY  L K  CK G +  A  + +  + +         Y   +    R GE  K  ++LN+
Sbjct: 404 AYGALLKACCKSGAMQRAAEVFQQ-ITDAGLKHNRITYCTMLDGWARKGELSKARDLLND 462

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           M + G   + +  ++ I    + G  EE  +    +RE+KL   A T
Sbjct: 463 MQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNART 509



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 148/332 (44%), Gaps = 5/332 (1%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           + +L    G +A+ L+ILE+M ++   P+   Y  ++   A   +  A  +VWE+M    
Sbjct: 198 IVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAG 257

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           ++ D++ Y  L+   CK GR+ +   +   ++ N +L     Y  +++G V  G + KA 
Sbjct: 258 LKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKAL 317

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           ++   +  +G R  +  YNS++ GL + +Q + A  +    + + + P+  +   L    
Sbjct: 318 EVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGY 377

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSS 411
           A  G ++  F +  +M+K   ++  D+  +   L    K   +  A +VF+++   G   
Sbjct: 378 ARAGDVEKAFGMFQRMKKENLAI--DIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKH 435

Query: 412 VPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
             I Y  ++      GE+ KA  L   M+     ++++ ++  I+    SGD  E  E  
Sbjct: 436 NRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETL 495

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
             + E     +   Y  L  G     + D A+
Sbjct: 496 AVMREKKLEVNARTYTTLIHGWLAAADPDQAI 527



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 139/339 (41%), Gaps = 12/339 (3%)

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+    + G  V     F  M+ + I  +  IY  LI        +  A    ++++
Sbjct: 20  YGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEML 79

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + +  ++ SII G       + A   FE    ++L P     N ++    + G M+
Sbjct: 80  SQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNME 139

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG-----KEERIMMALDVFEELKGKGYS-SVPI 414
               LLAQME+  F    +L  +   L G      EE+    L  F  LK  G S +   
Sbjct: 140 TVEALLAQMEEEGFQ--GNLGLYTTVLNGFAEIRDEEK---CLSFFHRLKACGLSPTAAT 194

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y  ++    + G + KAL +  +M    +  N + +++ +  +   GD   A +    ++
Sbjct: 195 YGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMV 254

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                P +  YN L    CK G +D A+ ++ +   N    PT   Y   +    + G  
Sbjct: 255 SAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLL-PTIETYTSILDGYVKGGNI 313

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
           +K +EV + +   G  P  V  ++++SG+ K   +E AR
Sbjct: 314 QKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENAR 352


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/518 (22%), Positives = 217/518 (41%), Gaps = 38/518 (7%)

Query: 81  LQRHLSP-----IARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLA 135
           L R L+P     +A  + D   +     GP+        R   P +V  +L +  +  L 
Sbjct: 93  LSRLLAPGHHPHLAASLVDLLHRAALALGPR--------RSALPSVVDTLLSLLADRGLL 144

Query: 136 SKFFHWAGKQKGYK--HNFASYNALAYCLSRNN----LFRAADQVP-----------ELM 178
                   + +  +   N  + N +  CL+R       +R  +Q+P           + +
Sbjct: 145 DDAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWRLFEQLPAPNVFTFNIMIDFL 204

Query: 179 DSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
             +G +AE   +L +M+   C PDV  Y ++I        L+   ++  EM+      DV
Sbjct: 205 CKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDV 264

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + Y  L+   CK GR+ R +  F EMK  G++ +   +   ++     G V +A  L   
Sbjct: 265 VTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQ 324

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +   G + +   Y  ++ G C+  + D A  L    VQ  +  +  T   L+    + G+
Sbjct: 325 MRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGK 384

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFF---EFLVGKEERIMMALDVFEELKGKGYS-SVPI 414
           +     +   ME+        L        F+    ER   AL +  E+K KG    V +
Sbjct: 385 VAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSER---ALSLLSEMKDKGMELDVSL 441

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y  L+  L  + ++ +A  L  KM    L+ N++ ++  +    ++    EA     K++
Sbjct: 442 YGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMM 501

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           +    P++  Y  L  GLCK G ID A+      + ++   P    Y   +  +C++G  
Sbjct: 502 DSGFRPNIVTYCALVDGLCKAGSIDEAISHFNK-MVDLGLEPNVQAYTALVDGLCKNGRL 560

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           +K + +L+EM  +G   + V+C++++ G  K G L++A
Sbjct: 561 DKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDA 598



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 184/448 (41%), Gaps = 60/448 (13%)

Query: 147 GYKHNFASYNALAYCLSR-NNLFRAADQVPEL---------------MDS---QGRIAEM 187
           G + +  +YNAL  C  +   + RA     E+               +D+    G + E 
Sbjct: 259 GCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREA 318

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           +++  +MR    KP+   YT ++        LD  L +  EM +  V  +V+ Y  L+ G
Sbjct: 319 MKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDG 378

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK G+V    ++FR M+  GI  +  +Y  LI G        +A  LL ++ D G   D
Sbjct: 379 LCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELD 438

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           + +Y ++I GLC +++ D+A  L     +  L P+      ++  C +  +      LL 
Sbjct: 439 VSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQ 498

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
           +M    F    ++  +   + G  K   I  A+  F ++   G   +V  Y  L+  L +
Sbjct: 499 KMMDSGFR--PNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCK 556

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G + KA+ L  +M    + ++++  +  +  H++ G++ +A     K+I       +  
Sbjct: 557 NGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYG 616

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y C   G C +  I  A                                     EVL+EM
Sbjct: 617 YTCFVWGFCNLNMIQEAR------------------------------------EVLSEM 640

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEA 572
            + G  P+ V+ + +I+   K G +EEA
Sbjct: 641 IENGITPDAVVYNCLINKCQKLGNMEEA 668



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 19/255 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           K KG + + + Y AL + L        A  +   MD  G                   + 
Sbjct: 431 KDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKE 490

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           +E + +L+KM  +  +P++  Y A++  L    ++D  +  + +M    +E +V AY  L
Sbjct: 491 SEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTAL 550

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + GLCK GR+ +   L  EM + G+ +D  +   L++G + +G +  A  L   +++SG 
Sbjct: 551 VDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGL 610

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           + DL  Y   + G C +    +A ++    +++ + PD    N L+  C ++G M+    
Sbjct: 611 QLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAI 670

Query: 365 LLAQMEKLKFSVAAD 379
           L  +ME L     AD
Sbjct: 671 LQNEMESLLSCTNAD 685



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 33/66 (50%)

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P  F + + I  +C+ G+  +   +L  M   GC P+ V  +++I G  K G LEE  K
Sbjct: 191 APNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEK 250

Query: 575 VFTNLR 580
           +   +R
Sbjct: 251 LVGEMR 256


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 116/550 (21%), Positives = 226/550 (41%), Gaps = 48/550 (8%)

Query: 81  LQRHLSPIARFITDAF-RKNQFQWGPQVVT---ELSKLRRVTPDLVAEVLKVENNPTLAS 136
           LQ  L  I   + D + R+   ++ P  +    + + L          +L  E    +A 
Sbjct: 79  LQSPLKKICSLVLDTYLRQPHLRFSPSKLNLDMDAASLTHEQAISAVALLASEEGSMVAL 138

Query: 137 KFFHWAGKQKGYKHNFASYNALAYCL-SRNNLFRAADQVPELMD---SQGRIAEMLEILE 192
            FF+WA     +++    Y      L  + NL RA + V  ++      G++ E ++++ 
Sbjct: 139 SFFYWAVGFPKFRYFMRLYIVCTMSLVGKCNLERAHEVVECMVGVFAEIGKLKEAVDMIL 198

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
            MR             +I V A  R ++    V++EM    V  D   Y  +I+G C+ G
Sbjct: 199 DMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNG 258

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
            V+       EM E G ++D A   ++I     +  V +A      +   G   +L  Y+
Sbjct: 259 NVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYS 318

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
           S+I GLC+     +A++L E  V++   P+  T   L+    + G  +  F+L  ++ + 
Sbjct: 319 SMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRS 378

Query: 373 KFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG---------------------- 408
             +   ++  +   + G  KEE++  A  +FE +K +G                      
Sbjct: 379 D-NYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFS 437

Query: 409 --------------YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
                         + +   YN ++  L + G  ++A  L        +E + ++++I I
Sbjct: 438 KAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILI 497

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
               +  D+ +A    NK+ ++   P +  Y  L    C+   +  +  L  + +  +  
Sbjct: 498 SEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVI-KLGL 556

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            PT+  Y   I   CR  +    ++   +M+  GC P+ +   A+ISG+CK   L+EAR+
Sbjct: 557 APTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQ 616

Query: 575 VFTNLRERKL 584
           ++  + ++ L
Sbjct: 617 LYDTMIDKGL 626



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/393 (19%), Positives = 161/393 (40%), Gaps = 36/393 (9%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P++  Y++MI  L    ++     + EEM K+  + +V  + +LI GLCK G   R   L
Sbjct: 312 PNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRL 371

Query: 261 FREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           F ++ + +    +   Y  +I G   E K+ +A  L + + + G   +   Y ++I G C
Sbjct: 372 FLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHC 431

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +   F KAY+L E+   +   P+  T N ++    + GR +  FKLL             
Sbjct: 432 KAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLN------------ 479

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
                    G + +I          +  G +    Y IL+    +  ++ +AL    KM 
Sbjct: 480 --------TGFQNQI----------EADGVT----YTILISEQCKRADMNQALVFLNKMF 517

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
            +  + +   ++  I        + ++ +  +++I++   P+   Y  +  G C+  ++ 
Sbjct: 518 KVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVS 577

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A+   +  + +    P    Y   I  +C+    ++  ++ + M  +G  P EV    +
Sbjct: 578 LAVKFFQK-MSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTL 636

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
               CK      A  +   L ++  +   +T++
Sbjct: 637 TYEYCKTEDFASAMVILERLNKKLWIRTVHTLI 669



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 3/194 (1%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDS---QGRIAEMLEILEKMRRNLCKPDVFAYT 207
           NF+    L   +S    F        ++D    +GR  E  ++L    +N  + D   YT
Sbjct: 435 NFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYT 494

Query: 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
            +I       +++  L    +M K   + D+  Y TLI   C+   +    +LF E+ + 
Sbjct: 495 ILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKL 554

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           G+   +  Y  +I G   E KV  A    + + D G   D   Y ++I GLC+  + D+A
Sbjct: 555 GLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEA 614

Query: 328 YKLFEVTVQDDLAP 341
            +L++  +   L+P
Sbjct: 615 RQLYDTMIDKGLSP 628



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 6/219 (2%)

Query: 387 LVGKEERIM-MALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
           LV  E R++  A +VF+E+  +G Y     Y  ++      G V +A     +M      
Sbjct: 217 LVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFV 276

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
           V++ + ++ I    E   +  A    +K+ +M   P++  Y+ +  GLCK G +  A  L
Sbjct: 277 VDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFEL 336

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV-LNEMTQEGCPPNEVICSAIISGM 563
           + + + N    P  + +   I  +C+ G  E+   + L  +  +   PN    +A+ISG 
Sbjct: 337 LEEMVKN-GWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGY 395

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
           CK   L  A  +F  ++E+ L+   NT  Y  ++  H K
Sbjct: 396 CKEEKLSRAEMLFERMKEQGLVPNTNT--YTTLIDGHCK 432



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 135/363 (37%), Gaps = 32/363 (8%)

Query: 103 WGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AY 160
           W P V T  S +  +      E          A + F    +   YK N  +Y A+   Y
Sbjct: 345 WKPNVYTHTSLIHGLCKKGWTE---------RAFRLFLKLIRSDNYKPNVHTYTAMISGY 395

Query: 161 C----LSRNNLF--RAADQ--VPE------LMDSQ---GRIAEMLEILEKMRRNLCKPDV 203
           C    LSR  +   R  +Q  VP       L+D     G  ++  E++E M      P+ 
Sbjct: 396 CKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNT 455

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y +++  L      +   ++     ++ +EAD + Y  LI   CK   + +      +
Sbjct: 456 CTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNK 515

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M + G   D  +Y  LI     +  +  +  L  +++  G       Y S+I G CR K+
Sbjct: 516 MFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKK 575

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
              A K F+       APD  +   L+    +  R+D   +L   M     S        
Sbjct: 576 VSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVT 635

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
             +   K E    A+ + E L  K +  +   + L+  L    +V  A   F K+  L+ 
Sbjct: 636 LTYEYCKTEDFASAMVILERLNKKLW--IRTVHTLIRKLCCEKKVALAALFFHKL--LDK 691

Query: 444 EVN 446
           EVN
Sbjct: 692 EVN 694


>gi|255586858|ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525946|gb|EEF28343.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 195/450 (43%), Gaps = 69/450 (15%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q R+ + +++  KM++    PD+  Y  +I    + + LD  L ++ EMK   ++ D+  
Sbjct: 92  QSRVDKGVQLFYKMQKYGLSPDISLYDVLIGGFCSNKKLDKALSLYAEMKMLKIQPDIGV 151

Query: 241 YVTLIMGLCKGGRVVRGHE---------------------------------LFREMKEN 267
              LI    + G+++   E                                 L R M  N
Sbjct: 152 VSKLISSFPEEGKLIDILEETLEDMNIETQTLLCNSVLSSLVNSGLIDKACCLLRNMMGN 211

Query: 268 G--------------ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           G              I  + A + ++I GL+   K+  A  L +D+ + G   DL +YN+
Sbjct: 212 GDDDDVQYKLFRDEKIRPNTASFSIVINGLMQACKLDLAVCLFQDMAEIGCNRDLLLYNN 271

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           +I GLC   + +++YKL +   +    P   T+N +  C  +   +     L+   +K++
Sbjct: 272 LINGLCNSDRLEESYKLLKEMEESGFKPTQFTLNSIFGCLCKRQDVSGALDLV---KKMR 328

Query: 374 FSVAADLEKFFEFLVGK-------EERIMMALDVFEELKGKGY-SSVPIYNILMGALLEI 425
                   K +  LV K        E  +   D+ +E    G+  ++  Y+ L+G L+E+
Sbjct: 329 LYGCEPWVKHYTLLVRKLCKHGKAAEASIFLTDMVQE----GFPPNIIAYSALLGGLIEV 384

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
            EV +AL LF  +       + ++++I ++   E+    EA    N+++    +PSV  Y
Sbjct: 385 QEVDQALKLFKDISARGRCPDVIAYNILMKGLYEAHRTEEARNLFNEMVMKGLIPSVVTY 444

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRSGEAEKIIEVLN 542
           N L  G CK G ID AM    +CL ++++    P  F Y   I  +C++G  +  + + N
Sbjct: 445 NLLIDGWCKNGCIDDAM----NCLCSMSAKEREPNVFTYTTLIDGLCKAGRPDDAVMLWN 500

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           EM + GC PN V     I G+CK    E A
Sbjct: 501 EMRRRGCRPNRVAFMGFIHGLCKCDKPEAA 530



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 171/394 (43%), Gaps = 19/394 (4%)

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           +  T +++V       D  L V+ E++ D    D   +  L++   K G+V +  E   +
Sbjct: 11  YTLTPVLQVYCNAGKFDEALNVFNEIQ-DHGWLDAYVFSILVLSFSKWGQVDKSFEFIEK 69

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M+E    ++   +  LI G V + +V K   L   +   G   D+ +Y+ +IGG C  K+
Sbjct: 70  MEEQNFRLNEKTFCNLIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYDVLIGGFCSNKK 129

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL-EK 382
            DKA  L+       + PD   V+ L+    E G++ +  +    +E +       L   
Sbjct: 130 LDKALSLYAEMKMLKIQPDIGVVSKLISSFPEEGKLIDILE--ETLEDMNIETQTLLCNS 187

Query: 383 FFEFLVGKE--------ERIMMALDVFEELKGKGYSSVPI------YNILMGALLEIGEV 428
               LV            R MM     ++++ K +    I      ++I++  L++  ++
Sbjct: 188 VLSSLVNSGLIDKACCLLRNMMGNGDDDDVQYKLFRDEKIRPNTASFSIVINGLMQACKL 247

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
             A+ LF  M  +    + L ++  I     S  + E+ +   ++ E    P+    N +
Sbjct: 248 DLAVCLFQDMAEIGCNRDLLLYNNLINGLCNSDRLEESYKLLKEMEESGFKPTQFTLNSI 307

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
              LCK  ++  A+ LV+  +      P    Y L +  +C+ G+A +    L +M QEG
Sbjct: 308 FGCLCKRQDVSGALDLVKK-MRLYGCEPWVKHYTLLVRKLCKHGKAAEASIFLTDMVQEG 366

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
            PPN +  SA++ G+ +   +++A K+F ++  R
Sbjct: 367 FPPNIIAYSALLGGLIEVQEVDQALKLFKDISAR 400



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 60/160 (37%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  E   +  +M      P V  Y  +I        +D  +     M     E +V  Y 
Sbjct: 421 RTEEARNLFNEMVMKGLIPSVVTYNLLIDGWCKNGCIDDAMNCLCSMSAKEREPNVFTYT 480

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TLI GLCK GR      L+ EM+  G   +R  +   I GL    K   A     ++ + 
Sbjct: 481 TLIDGLCKAGRPDDAVMLWNEMRRRGCRPNRVAFMGFIHGLCKCDKPEAALIHFHEMEEE 540

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
               D  +Y S++     +  F  A+++ +  V     PD
Sbjct: 541 EMEPDTYVYISLVSAFVNISNFPMAFEILKKMVDRRNFPD 580


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 201/452 (44%), Gaps = 14/452 (3%)

Query: 181 QGRIAEMLE-ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +G   ++LE +  +M     KPDV  +  +++ L     +   + + EEM    V  D  
Sbjct: 66  EGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDET 125

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            + TL+ G  + G +     +   M E G    +    VLI G    G+V  A   ++  
Sbjct: 126 TFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQE 185

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G+  D   YN+ + GLC+      A K+ +V VQ+   PD  T N ++ C  + G++
Sbjct: 186 IADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQL 245

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           +    +L QM  +      D+  F   +       R+  ALD+  ++  KG S  V  +N
Sbjct: 246 EEAKGILNQM--VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFN 303

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+ AL ++G+   AL LF +M+      + ++++  I      G + +A +   K +E 
Sbjct: 304 ILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLL-KDMES 362

Query: 477 SQVP-SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
           +  P S   YN +  GLCK   I+ A   V D +           +   I  +C+  + +
Sbjct: 363 TGCPRSTITYNTIIDGLCKKMRIEEAEE-VFDQMDLQGISRNAITFNTLIDGLCKDKKID 421

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
              E++N+M  EG  PN +  ++I++  CK G +++A  +   +       E + + Y  
Sbjct: 422 DAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGF--EVDVVTYGT 479

Query: 596 I---LIEHMKKKTADLVLSGLKFFGLESKLKA 624
           +   L +  + + A  VL G++  G+    KA
Sbjct: 480 LINGLCKAGRTQVALKVLRGMRIKGMRPTPKA 511



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 159/355 (44%), Gaps = 21/355 (5%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+G+  +  +YN +  CL +N                G++ E   IL +M    C PD+ 
Sbjct: 222 QEGHDPDVFTYNIVVNCLCKN----------------GQLEEAKGILNQMVDRGCLPDIT 265

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            +  +I  L     L+  L +  ++    V  DV  +  LI  LCK G       LF EM
Sbjct: 266 TFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM 325

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K +G   D   Y  LI+ L   GK+GKA DLLKD+  +G       YN+II GLC+  + 
Sbjct: 326 KNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 385

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           ++A ++F+      ++ +  T N L+    +  ++D+ F+L+ QM  +   +  +   + 
Sbjct: 386 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQM--ISEGLQPNNITYN 443

Query: 385 EFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
             L    K+  I  A D+ E +   G+   V  Y  L+  L + G  + AL +   MR  
Sbjct: 444 SILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIK 503

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            +     +++  +Q      +I +A     ++ E+ + P    Y  + +GLC+ G
Sbjct: 504 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGG 558



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 169/389 (43%), Gaps = 6/389 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + L  +++   +  +PD   Y   +  L    ++   L+V + M ++  + DV  Y
Sbjct: 173 GRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTY 232

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++  LCK G++     +  +M + G L D   +  LI  L    ++ +A DL + +  
Sbjct: 233 NIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTV 292

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  +N +I  LC+V     A +LFE        PD  T N L+     +G++  
Sbjct: 293 KGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGK 352

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
              LL  ME      +          + K+ RI  A +VF+++  +G S   I +N L+ 
Sbjct: 353 ALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLID 412

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L +  ++  A  L  +M    L+ N+++++  +  + + GDI +A +    +       
Sbjct: 413 GLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEV 472

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKII 538
            V  Y  L  GLCK G    A+ ++R   G    G  PT   Y   +  + R       +
Sbjct: 473 DVVTYGTLINGLCKAGRTQVALKVLR---GMRIKGMRPTPKAYNPVLQSLFRRNNIRDAL 529

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            +  EM + G PP+ +    +  G+C+ G
Sbjct: 530 SLFREMAEVGEPPDALTYKIVFRGLCRGG 558



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 168/379 (44%), Gaps = 45/379 (11%)

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           GI  D  +Y  L+  LV   K+     +  ++   G + D+  +N+++  LCR  Q   A
Sbjct: 49  GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 108

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS------------ 375
             + E      +APD +T   L+    E G ++   ++ A+M ++  S            
Sbjct: 109 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 168

Query: 376 -------------VAADLEKFFE--------FLVG--KEERIMMALDVFEELKGKGYS-S 411
                        +  ++   FE        F+ G  + + +  AL V + +  +G+   
Sbjct: 169 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 228

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDIL-EACE 468
           V  YNI++  L + G++++A  +  +M  RG   ++ + +  IA  C   +G+ L EA +
Sbjct: 229 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC---TGNRLEEALD 285

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
              ++      P V  +N L   LCK+G+   A+ L  + + N    P E  Y   I ++
Sbjct: 286 LARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE-MKNSGCTPDEVTYNTLIDNL 344

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C  G+  K +++L +M   GCP + +  + II G+CK   +EEA +VF  +  + +    
Sbjct: 345 CSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGI--SR 402

Query: 589 NTIVYDEILIEHMKKKTAD 607
           N I ++ ++    K K  D
Sbjct: 403 NAITFNTLIDGLCKDKKID 421



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 9/154 (5%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR    L++L  MR    +P   AY  +++ L    N+   L ++ EM +     D + Y
Sbjct: 488 GRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTY 547

Query: 242 VTLIMGLCKGGRVVR-GHELFREMKENGILIDRAIYGVLIEGLVGEGKVG---KACDLLK 297
             +  GLC+GG  ++   +   EM + G + + + + +L EGL+  G      +A +++ 
Sbjct: 548 KIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIM 607

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           + VD    +D+    S I G  ++++F  A   F
Sbjct: 608 EKVDL-RESDV----SAIRGYLKIRKFYDALATF 636


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 168/384 (43%), Gaps = 36/384 (9%)

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           E  R N+ +  ++ +  MI VL  E  L         M+   V+ +V+ Y T+I G C  
Sbjct: 206 EMFRMNI-RSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLR 264

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           G+  R   +F+ MK+ G+  D   Y   I GL  EG++ +A  L+  +++ G   +   Y
Sbjct: 265 GKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTY 324

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N++I G C     DKAY   +  +   +     T N  +      GRM +   ++ +M  
Sbjct: 325 NALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEM-- 382

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKA 431
                               E+ MM   V              +NIL+      G+ K+A
Sbjct: 383 -------------------REKGMMPDAV-------------THNILINGYCRCGDAKRA 410

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
             L  +M G  ++   ++++  I    +   + EA    +KI +   +P +  +N L  G
Sbjct: 411 FGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDG 470

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
            C  G ID A  L+++ + N+   P E  Y   +   CR G+ E+  ++L+EM + G  P
Sbjct: 471 HCANGNIDRAFQLLKE-MDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKP 529

Query: 552 NEVICSAIISGMCKHGTLEEARKV 575
           + +  + +ISG  K G +++A +V
Sbjct: 530 DHISYNTLISGYSKRGDMKDAFRV 553



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 164/384 (42%), Gaps = 2/384 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ +  E +  M     KP+V  Y  +I              +++ MK   +E D   
Sbjct: 229 EGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYT 288

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y + I GLCK GR+     L  +M E G++ +   Y  LI+G   +G + KA     +++
Sbjct: 289 YNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMI 348

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G  A L  YN  I  L    +   A  + +   +  + PD  T N L+      G   
Sbjct: 349 SKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAK 408

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILM 419
             F LL +M                +++GK  R+  A  +F +++ +G    + ++N L+
Sbjct: 409 RAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALI 468

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
                 G + +A  L  +M  + +  + ++++  +Q +   G + EA +  +++      
Sbjct: 469 DGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIK 528

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P   +YN L  G  K G++  A   VRD +      PT   Y   I  +C++ E E   E
Sbjct: 529 PDHISYNTLISGYSKRGDMKDAFR-VRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEE 587

Query: 540 VLNEMTQEGCPPNEVICSAIISGM 563
           +L EM  +G  P++    +II  M
Sbjct: 588 LLKEMVSKGITPDDSTYLSIIEAM 611



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 16/200 (8%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           KG +    +Y +L Y L + N  + AD +   +  +G +                PD+  
Sbjct: 420 KGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLL----------------PDIIV 463

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           + A+I    A  N+D   ++ +EM    V  D + Y TL+ G C+ G+V    +L  EMK
Sbjct: 464 FNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMK 523

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
             GI  D   Y  LI G    G +  A  +  +++ +G+   +  YN++I GLC+ ++ +
Sbjct: 524 RRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGE 583

Query: 326 KAYKLFEVTVQDDLAPDFST 345
            A +L +  V   + PD ST
Sbjct: 584 HAEELLKEMVSKGITPDDST 603



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 3/139 (2%)

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           +L F + ++ + E     EA EC   I E   VP++   N +     K+     A +L  
Sbjct: 146 TLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYA 205

Query: 507 DCLG-NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
           +    N+ S    F   + +L  C+ G+ +K  E +  M   G  PN V  + II G C 
Sbjct: 206 EMFRMNIRSSLYTFNIMINVL--CKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCL 263

Query: 566 HGTLEEARKVFTNLRERKL 584
            G  + AR +F  ++++ L
Sbjct: 264 RGKFQRARVIFQTMKDKGL 282


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 191/409 (46%), Gaps = 8/409 (1%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           + D++ +  +I        +   L +  +M K   E D +   +L+ G C+  RV     
Sbjct: 117 RNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 176

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L  +M E G   D   Y  +I+ L    +V  A D  K++   G R ++  Y +++ GLC
Sbjct: 177 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLC 236

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
              ++  A +L    ++  + P+  T + LL    + G++    +L  +M  ++ S+  D
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM--VRMSIDPD 294

Query: 380 LEKFFEFLVGK--EERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFG 436
           +  +   + G    +RI  A  +F+ +  KG  + V  YN L+    +   V+  + LF 
Sbjct: 295 IVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 354

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M    L  N+++++  IQ   ++GD+ +A E  +++      P +  YN L  GLC  G
Sbjct: 355 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNG 414

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           E++ A+++  D +           Y   I  +C++G+ E+   +   ++ +G  P+ V  
Sbjct: 415 ELEKALVIFED-MQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTY 473

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI--EHMKK 603
           + ++SG+C  G L E   ++T +++  L+    T+   +I +  E +KK
Sbjct: 474 TTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKK 522



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 162/322 (50%), Gaps = 11/322 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + R+++ + +++KM     KPD+ AY A+I  L   + ++     ++E+++  +  +V+ 
Sbjct: 168 RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVT 227

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ GLC   R      L  +M +  I  +   Y  L++  V  GKV +A +L +++V
Sbjct: 228 YTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV 287

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 D+  Y+S+I GLC   + D+A ++F++ V      D  + N L+    +  R++
Sbjct: 288 RMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVE 347

Query: 361 NFFKLLAQMEK---LKFSVAAD--LEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPI 414
           +  KL  +M +   +  +V  +  ++ FF+   G  ++   A + F ++   G S  +  
Sbjct: 348 DGMKLFREMSQRGLVSNTVTYNTLIQGFFQ--AGDVDK---AQEFFSQMDFFGISPDIWT 402

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YNIL+G L + GE++KAL +F  M+   ++++ ++++  I+   ++G + EA      + 
Sbjct: 403 YNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLS 462

Query: 475 EMSQVPSVAAYNCLTKGLCKIG 496
                P +  Y  +  GLC  G
Sbjct: 463 LKGLKPDIVTYTTMMSGLCTKG 484



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 153/370 (41%), Gaps = 63/370 (17%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------------PELMDS---QGRI 184
           ++KG + N  +Y AL   L  ++ +  A ++                  L+D+    G++
Sbjct: 217 ERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKV 276

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  E+ E+M R    PD+  Y+++I  L     +D   ++++ M      ADV++Y TL
Sbjct: 277 LEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 336

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK  RV  G +LFREM + G++ +   Y  LI+G    G V KA +    +   G 
Sbjct: 337 INGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI 396

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  YN ++GGLC   + +KA  +FE   + ++  D  T   ++    + G+++  + 
Sbjct: 397 SPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWS 456

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE 424
           L   +                                  LKG     +  Y  +M  L  
Sbjct: 457 LFCSL---------------------------------SLKGLK-PDIVTYTTMMSGLCT 482

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G + +   L+ KM+   L  N         C +  GDI  + E   K++     PS+  
Sbjct: 483 KGLLHEVEALYTKMKQEGLMKN--------DCTLSDGDITLSAELIKKMLSCGYAPSLLK 534

Query: 485 YNCLTKGLCK 494
              +  G+CK
Sbjct: 535 D--IKSGVCK 542


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/523 (21%), Positives = 223/523 (42%), Gaps = 62/523 (11%)

Query: 131 NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD----------- 179
           N  +A KFFH   K +G K +  SY ++ + L +      A+++   M+           
Sbjct: 264 NVDMAWKFFHEL-KAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAY 322

Query: 180 --------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK 231
                   S GR  +  ++LE++R   C P V ++ +++  L  +R +D  L ++E MKK
Sbjct: 323 NTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK 382

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
           D  E +   Y  +I  LC GGRV   + +  EM+   +  +     ++++ L    K+ +
Sbjct: 383 D-AEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEE 441

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A  + +     G   D   Y S+I GL +  Q D+AY+LFE  +      +      L+ 
Sbjct: 442 AYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 501

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGY 409
                GR ++  K+  ++  ++     DL     ++  V K   +     +FE+++  G+
Sbjct: 502 NFFIHGRKEDGHKIFKEL--IRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGF 559

Query: 410 -SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
              V  Y+IL+  L + G+ ++   +F  M+     +++ +++  +    +SG + +A E
Sbjct: 560 LPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYE 619

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR------------------DCLG 510
              ++ E    P+VA Y  +  GL KI  +D A ML                    D  G
Sbjct: 620 ILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFG 679

Query: 511 NVAS----------------GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
            V                   P  + +   +  + ++ E  + +     M +  CPPN  
Sbjct: 680 KVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTY 739

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             S +I+G+C+     +A   + +++++ L+   N + Y  ++
Sbjct: 740 TYSILINGLCRVQKYNKAFVFWQDMQKQGLVP--NVVTYTTMI 780



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 188/403 (46%), Gaps = 3/403 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++A+ L ++++++ +  +PD+  Y   I       N+D   + + E+K   ++ D ++
Sbjct: 227 EGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVS 286

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y ++I  LCK GR+    ELF +M+    +     Y  +I G    G+   A  LL+ L 
Sbjct: 287 YTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLR 346

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G    +  +NSI+  L + ++ D+A  LFEV ++ D  P+ ST N ++      GR++
Sbjct: 347 ERGCIPSVVSFNSILTCLGKKRKVDEALSLFEV-MKKDAEPNSSTYNIIIDMLCLGGRVE 405

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
             +++L +ME                 + K  ++  A  +FE    +G +     Y  L+
Sbjct: 406 EAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLI 465

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L + G+V +A  LF KM       N + ++  I+     G   +  +   ++I     
Sbjct: 466 DGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCK 525

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P +   N     + K GE++   M+  D + +    P    Y++ I  + ++G+A +   
Sbjct: 526 PDLTLLNTYMDCVFKAGEVEKGRMIFED-IRSYGFLPDVRSYSILIHGLTKAGQARETSN 584

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           + + M Q+G   +    +A++ G CK G + +A ++   ++E+
Sbjct: 585 IFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEK 627



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/437 (23%), Positives = 182/437 (41%), Gaps = 41/437 (9%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ E  +I E   +  C PD   Y ++I  L  +  +D   R++E+M      A+ + Y 
Sbjct: 438 KLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYT 497

Query: 243 TLIMGLCKGGRVVRGHELFREM-----------------------------------KEN 267
           +LI      GR   GH++F+E+                                   +  
Sbjct: 498 SLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSY 557

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           G L D   Y +LI GL   G+  +  ++   +   G+  D   YN+++ G C+  +  KA
Sbjct: 558 GFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKA 617

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
           Y++ E   +  + P  +T   ++   A++ R+D  + L  + +     +   L       
Sbjct: 618 YEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDG 677

Query: 388 VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
            GK  RI  A  + EE+  KG + +V  +N L+ AL++  E+ +AL  F  M+ +    N
Sbjct: 678 FGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPN 737

Query: 447 SLSFSIAIQ--CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
           + ++SI I   C V+  +  +A      + +   VP+V  Y  +  GL K+G I  A  L
Sbjct: 738 TYTYSILINGLCRVQKYN--KAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSL 795

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
                 N    P    +   I  +  +  A +  +V  E    GC  N   C +++  + 
Sbjct: 796 FERFKAN-GGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCISLLDALN 854

Query: 565 KHGTLEEARKVFTNLRE 581
           K   LE+A  V   LRE
Sbjct: 855 KSECLEQAAIVGAVLRE 871



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 125/527 (23%), Positives = 220/527 (41%), Gaps = 34/527 (6%)

Query: 103 WGPQVVTELSKLRRVTP--DLVAEVLKVENNPTLASKFFHWAGKQKGYKHN---FASYNA 157
           W P +   +S     +P  D+V  VL+   NP+LA+ FF  A        +     +Y+A
Sbjct: 57  WTPDLARAVSSTFSASPTADVVISVLRSIRNPSLAAPFFLLASSSSASAPHPLPADAYHA 116

Query: 158 LAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEMLEILEKMRRNL 198
           +   L  +    A ++V E M   G                   R+ + +  +  MRR  
Sbjct: 117 VLPFLHHD--LAALEKVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMRRLK 174

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
            +P   AYT +I  LA  R  +  L +  +M++   E  V  + TL+  L + G+V    
Sbjct: 175 FRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADAL 234

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L  E+K + +  D  +Y V I+     G V  A     +L   G + D   Y S+I  L
Sbjct: 235 ALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVL 294

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C+  +  +A +LF     +   P     N +++     GR ++ +KLL ++ +       
Sbjct: 295 CKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRER--GCIP 352

Query: 379 DLEKFFEFL--VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFG 436
            +  F   L  +GK+ ++  AL +FE +K     +   YNI++  L   G V++A  +  
Sbjct: 353 SVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILD 412

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M   +L  N L+ +I +    ++  + EA +      +    P    Y  L  GL K G
Sbjct: 413 EMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKG 472

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           ++D A  L    L +         Y   I +    G  E   ++  E+ + GC P+  + 
Sbjct: 473 QVDEAYRLFEKML-DAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLL 531

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           +  +  + K G +E+ R +F ++R    L +  +     ILI  + K
Sbjct: 532 NTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSY---SILIHGLTK 575



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 131/278 (47%), Gaps = 27/278 (9%)

Query: 136 SKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEK 193
           S  FH A KQ+G+  +  +YNA+   +C S                  G++ +  EILE+
Sbjct: 583 SNIFH-AMKQQGFALDARAYNAVVDGFCKS------------------GKVHKAYEILEE 623

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M+    +P V  Y A++  LA    LD    ++EE K   +E +V+ Y +LI G  K GR
Sbjct: 624 MKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGR 683

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           +   + +  EM + G+  +   +  L++ LV   ++ +A    + + +     +   Y+ 
Sbjct: 684 IDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSI 743

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           +I GLCRV++++KA+  ++   +  L P+  T   ++   A++G + + + L    E+ K
Sbjct: 744 LINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLF---ERFK 800

Query: 374 FSVAADLEKFFEFLV---GKEERIMMALDVFEELKGKG 408
            +        F  L+       R M A  VFEE + +G
Sbjct: 801 ANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRG 838


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 118/526 (22%), Positives = 218/526 (41%), Gaps = 69/526 (13%)

Query: 119 PDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM 178
           P  V  V++ + +P  A + F+   K+ G+KH  ++Y ++   L     F A ++V  L+
Sbjct: 7   PKHVTTVIRCQKDPMKALEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEV--LV 64

Query: 179 D----------------------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE 216
           D                       +G++ E + + E+M    C+P VF+Y A++ +L   
Sbjct: 65  DMRQNVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDS 124

Query: 217 RNLD-----------------------------------ACLRVWEEMKKDLVEADVMAY 241
              D                                   A LR+   M     E +V+AY
Sbjct: 125 GYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAY 184

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T++ G  +      G+ELF +M  +G+ +  + +  L+  L  +G V +   LL  ++ 
Sbjct: 185 CTVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIK 244

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   +L  YN  I GLC+  + D A ++    +     PD  T N L+    +  +   
Sbjct: 245 RGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQE 304

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IYN 416
               L ++  +   +  D   +   + G  K   + +A  +       G+  VP    Y 
Sbjct: 305 AEVYLGKL--VNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGF--VPDEFTYR 360

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  L   GE  +AL LF +  G  ++ N + ++  I+     G ILEA +  +++ E 
Sbjct: 361 SLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEK 420

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
             +P V  +N L  GLCK+G +  A  LV+  +      P  F + + I       + E 
Sbjct: 421 GLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISK-GYFPDIFTFNILIHGYSTQLKMEN 479

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
            +E+L+ M   G  P+    +++++G+CK    E+  + +  + E+
Sbjct: 480 ALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEK 525



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 197/474 (41%), Gaps = 59/474 (12%)

Query: 133 TLASKFFHWAGKQKGYK---HNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLE 189
           T+   F+    K +GY+      AS   ++ CLS  N      ++  ++  +G + E  +
Sbjct: 186 TVVGGFYEENFKDEGYELFGKMLAS--GVSLCLSTFN------KLLHVLCKKGDVKECEK 237

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +L+K+ +    P++F Y   I+ L  +  LDA +R+   +     + DV+ Y  LI GLC
Sbjct: 238 LLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLC 297

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K  +         ++   G+  D   Y  LI G    G V  A  +L + V +G+  D  
Sbjct: 298 KNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEF 357

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            Y S+I GLC   + ++A  LF   +   + P+    N L+   +  G            
Sbjct: 358 TYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQG------------ 405

Query: 370 EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEV 428
                                   I+ A  +  E+  KG    V  +NIL+  L ++G V
Sbjct: 406 -----------------------LILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCV 442

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
             A  L   M       +  +F+I I  +     +  A E  + +++    P V  YN L
Sbjct: 443 SDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSL 502

Query: 489 TKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
             GLCK  + +  M     M+ + C       P  F + + +  +CR  + +K + +L E
Sbjct: 503 LNGLCKTSKYEDVMETYKTMVEKGC------APNLFTFNILLESLCRYHKLDKALGLLEE 556

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           M  +   P+ V    +I G CK+G L+ A  +F  + E  +++  +T  Y+ I+
Sbjct: 557 MKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVS-CSTPTYNIII 609



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 111/492 (22%), Positives = 213/492 (43%), Gaps = 64/492 (13%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQV----------PELMDSQGRIAE-----MLE 189
            +G K +  +YN L Y L +N+ F+ A+            P+       IA      M++
Sbjct: 279 DQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQ 338

Query: 190 ILEKMRRNLC----KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + E++  N       PD F Y ++I  L  E   +  L ++ E     ++ +V+ Y TLI
Sbjct: 339 LAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLI 398

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GL   G ++   +L  EM E G++ +   + +L+ GL   G V  A  L+K ++  GY 
Sbjct: 399 KGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYF 458

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  +N +I G     + + A ++ +V + + + PD  T N LL    +  + ++    
Sbjct: 459 PDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYED---- 514

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
                                           ++ ++ +  KG + ++  +NIL+ +L  
Sbjct: 515 -------------------------------VMETYKTMVEKGCAPNLFTFNILLESLCR 543

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP-SVA 483
             ++ KAL L  +M+  ++  ++++F   I    ++GD+  A     K+ E+  V  S  
Sbjct: 544 YHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTP 603

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            YN +     +   +  A  L ++ + +   GP  + Y L +   C++G  +   + L E
Sbjct: 604 TYNIIIHAFTEKLNVTMAEKLFQEMV-DRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLE 662

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           M + G  P+      +I+ +C    + EA  +   + ++ L+ EA   ++D     H KK
Sbjct: 663 MMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAVNTIFD-----HDKK 717

Query: 604 KTA--DLVLSGL 613
           + A   LVL  L
Sbjct: 718 EVAAPKLVLEDL 729


>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 737

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 130/508 (25%), Positives = 235/508 (46%), Gaps = 39/508 (7%)

Query: 83  RHLSPIARFITDAFRKNQFQWGPQVVTELSKL-RRVTPDLVAEVLKVENNPTLASKFFHW 141
           RH  P+ R +     +    W  ++  +L +L R + P  V  VL+++++  +A  FF+W
Sbjct: 69  RH--PLVREVCRLIERRS-AWNAKLEGDLRRLLRSLKPRQVCAVLQLQSDERIALDFFYW 125

Query: 142 AGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           AG+Q  Y+H+   Y  +   LS+  L + A +V  LM  +G IA              +P
Sbjct: 126 AGRQWRYRHDPIVYYMMLQVLSKTKLCQGARRVLRLMVRRG-IAR-------------RP 171

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           + FA+  +    A +  L   ++V   M+K  VE +++   T I  L    ++ +     
Sbjct: 172 EAFAHVMVSYSRAGK--LRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFL 229

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             M+  GI  +   Y  LI+G     +V  A +L+ ++   G   D   Y +++G LC+ 
Sbjct: 230 ERMQLVGITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQD 289

Query: 322 KQFDKAYKLFEVTVQDD-LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV---- 376
           K+  +   L E  V+D+ L PD  T N L+   ++ G  D   + L + E+  F V    
Sbjct: 290 KRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVG 349

Query: 377 -AADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL 434
            +A +  F   + G+ +R   A ++  E+  KG S  V  Y  ++  L ++G+V++A  +
Sbjct: 350 YSAIVNSF--CMQGRMDR---AKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKM 404

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
             +M     + N++S++  +    + G+ LEA E  N   E    P+   Y+ +  GL +
Sbjct: 405 LQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRR 464

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC---RSGEAEKIIEVLNEMTQEGCPP 551
            G++  A  +VR+ L      PT  +  L I  +C   +  EA+K +E   E    GC  
Sbjct: 465 EGKLSEACDVVREMLTK-GFFPTPVEINLLIKSLCLEQKMNEAKKFME---ECLNRGCAV 520

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNL 579
           N V  + +I G C+   ++ A  +  ++
Sbjct: 521 NAVNFTTVIHGFCQSDNIDTALSLLDDM 548



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 169/411 (41%), Gaps = 42/411 (10%)

Query: 183 RIAEMLEILEKM-RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           RI E+  ++EKM + N   PD   Y  ++ +L+   + D  L    E ++   + D + Y
Sbjct: 291 RIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGY 350

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++   C  GR+ R  E+  EM   G   D   Y  ++ GL   GKV +A  +L+ +  
Sbjct: 351 SAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYK 410

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + +   Y +++ GLC+     +A ++   + +D   P+  T + +            
Sbjct: 411 HGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVV------------ 458

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
                  M  L+                +E ++  A DV  E+  KG+   P+  N+L+ 
Sbjct: 459 -------MHGLR----------------REGKLSEACDVVREMLTKGFFPTPVEINLLIK 495

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           +L    ++ +A     +       VN+++F+  I    +S +I  A    + +   ++ P
Sbjct: 496 SLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNKHP 555

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
               +  +   L K G I+ A +     L      PT   Y   I   C+ G  E++I++
Sbjct: 556 DAVTFTAIIDALGKKGRIEEATVYTMKMLKK-GLDPTPVTYRAVIHQYCKMGRVEELIKL 614

Query: 541 LNEM-TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           L +M ++  C       + +I  +C  G  E A KV   +       +ANT
Sbjct: 615 LGKMLSRSKC---RTAYNQVIEKLCNFGNPEAADKVVGLVLRTASRIDANT 662



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 123/266 (46%), Gaps = 15/266 (5%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QGR+    EI+ +M    C PDV  YTA++  L     ++   ++ ++M K   + + ++
Sbjct: 360 QGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVS 419

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ GLC+ G  +   E+    +E+    +   Y V++ GL  EGK+ +ACD++++++
Sbjct: 420 YTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREML 479

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G+       N +I  LC  ++ ++A K  E  +    A +      ++    +   +D
Sbjct: 480 TKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNID 539

Query: 361 NFFKLLAQM-------EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
               LL  M       + + F+   D        +GK+ RI  A     ++  KG    P
Sbjct: 540 TALSLLDDMYLNNKHPDAVTFTAIID-------ALGKKGRIEEATVYTMKMLKKGLDPTP 592

Query: 414 I-YNILMGALLEIGEVKKALYLFGKM 438
           + Y  ++    ++G V++ + L GKM
Sbjct: 593 VTYRAVIHQYCKMGRVEELIKLLGKM 618



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/435 (20%), Positives = 174/435 (40%), Gaps = 15/435 (3%)

Query: 156 NALAYCLSRNNLFRAADQVP-----ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           N +   +  N LF   DQV       ++   G   E LE L +      + D   Y+A++
Sbjct: 297 NLMEKMVKDNKLF--PDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIV 354

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
                +  +D    +  EM       DV+ Y  ++ GLCK G+V    ++ ++M ++G  
Sbjct: 355 NSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCK 414

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
            +   Y  L+ GL   G   +A +++    +  +  +   Y+ ++ GL R  +  +A  +
Sbjct: 415 PNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDV 474

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG- 389
               +     P    +N L+       +M+   K +   E L    A +   F   + G 
Sbjct: 475 VREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFME--ECLNRGCAVNAVNFTTVIHGF 532

Query: 390 -KEERIMMALDVFEELK-GKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS 447
            + + I  AL + +++     +     +  ++ AL + G +++A     KM    L+   
Sbjct: 533 CQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPTP 592

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
           +++   I  + + G + E  +   K++  S+  +  AYN + + LC  G  +AA  +V  
Sbjct: 593 VTYRAVIHQYCKMGRVEELIKLLGKMLSRSKCRT--AYNQVIEKLCNFGNPEAADKVVGL 650

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            L   +       + L   ++ + G      +V   M      P+  +C  +   +   G
Sbjct: 651 VLRTASRIDANTCHMLMESYLSK-GIPLSAYKVACRMFDRNLIPDLKLCEKLSKKLVLEG 709

Query: 568 TLEEARKVFTNLRER 582
            LEEA  +     +R
Sbjct: 710 KLEEADNLMLQFVQR 724


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/469 (23%), Positives = 207/469 (44%), Gaps = 38/469 (8%)

Query: 115 RRVTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQ 173
           + + P +  EV+K ++NNP +  +F+ ++  +   +H+F +YN L   L +  L   A Q
Sbjct: 65  KNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQ 124

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           + E M S G ++    +L  +  +  +     +   + + + E                 
Sbjct: 125 MFECMKSDG-VSPNNRLLGFLVSSFAEKGKLHFATALLLQSFE----------------- 166

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           VE   M   +L+  L K  RV    +LF E        D   + +LI GL G GK  KA 
Sbjct: 167 VEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKAL 226

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVC 352
           +LL  +   G   D+  YN++I G C+  + +KA ++F +V      +PD  T   ++  
Sbjct: 227 ELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISG 286

Query: 353 CAEMGRMDNFFKLLAQMEKL-------KFSVAAD-LEKFFEFLVGKEER-IMMALDVFEE 403
             + G+M     LL  M +L        F+V  D   K  E L  +E R  M++   F +
Sbjct: 287 YCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPD 346

Query: 404 LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
                   V  +  L+     +G+V +   L+ +M    +  N+ ++SI I        +
Sbjct: 347 --------VVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRL 398

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
           L+A E   ++     +P    YN +  G CK G+++ A ++V + +      P +  + +
Sbjct: 399 LKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEE-MEKKKCKPDKITFTI 457

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
            I+  C  G   + + + ++M   GC P+++  S+++S + K G  +EA
Sbjct: 458 LIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEA 506



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 165/393 (41%), Gaps = 43/393 (10%)

Query: 223 LRVWEEMKKDL-VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
            R WE  +  L +      Y  L   LCK G      ++F  MK +G+  +  + G L+ 
Sbjct: 87  FRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVS 146

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
               +GK+  A  LL  L          + NS++  L ++ + + A KLF+  ++     
Sbjct: 147 SFAEKGKLHFATALL--LQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCN 204

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALD 399
           D  T N L+     +G+ +   +LL  M    F    D+  +   + G  K   +  A +
Sbjct: 205 DTKTFNILIRGLCGVGKAEKALELLGVMSG--FGCEPDIVTYNTLIQGFCKSNELNKASE 262

Query: 400 VFEELKGKGYSS--VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
           +F+++K     S  V  Y  ++    + G++++A  L   M  L +   +++F++ +  +
Sbjct: 263 MFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGY 322

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML------------- 504
            ++G++L A E   K+I     P V  +  L  G C++G++     L             
Sbjct: 323 AKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNA 382

Query: 505 ------------------VRDCLGNVASG---PTEFKYALTILHVCRSGEAEKIIEVLNE 543
                              R+ LG +AS    P  F Y   I   C++G+  +   ++ E
Sbjct: 383 FTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEE 442

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           M ++ C P+++  + +I G C  G + EA  +F
Sbjct: 443 MEKKKCKPDKITFTILIIGHCMKGRMFEAVSIF 475



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 135/288 (46%), Gaps = 5/288 (1%)

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           R     YN +   LC+    D A ++FE    D ++P+   +  L+   AE G++     
Sbjct: 100 RHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATA 159

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE-LKGKGYSSVPIYNILMGALL 423
           LL Q  +++      +      LV K +R+  A+ +F+E L+ +  +    +NIL+  L 
Sbjct: 160 LLLQSFEVE-GCCMVVNSLLNTLV-KLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLC 217

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PSV 482
            +G+ +KAL L G M G   E + ++++  IQ   +S ++ +A E    +   S   P V
Sbjct: 218 GVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDV 277

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             Y  +  G CK G++  A  L+ D L  +   PT   + + +    ++GE     E+  
Sbjct: 278 VTYTSMISGYCKAGKMREASSLLDDML-RLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRG 336

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +M   GC P+ V  +++I G C+ G + +  +++  +  R +   A T
Sbjct: 337 KMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFT 384



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 6/177 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE-RNLDACLRVWEEMKKDLVEADVMA 240
           G++++   + E+M      P+ F Y+ +I  L  E R L A   + +   KD++    M 
Sbjct: 361 GQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFM- 419

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G CK G+V   + +  EM++     D+  + +LI G   +G++ +A  +   +V
Sbjct: 420 YNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMV 479

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT----VQDDLAPDFSTVNPLLVCC 353
             G   D    +S++  L +     +AY L ++       + + P+  T N  L  C
Sbjct: 480 AIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIARKGQSNNVVPPETKTANATLAAC 536



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 4/202 (1%)

Query: 401 FEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
           F   K     S   YN+L  +L + G    A  +F  M+   +  N+      +    E 
Sbjct: 92  FSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEK 151

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
           G +  A     +  E+     V   N L   L K+  ++ AM L  + L   +   T+  
Sbjct: 152 GKLHFATALLLQSFEVEGCCMVV--NSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTK-T 208

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           + + I  +C  G+AEK +E+L  M+  GC P+ V  + +I G CK   L +A ++F +++
Sbjct: 209 FNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVK 268

Query: 581 ERKLLTEANTIVYDEILIEHMK 602
              + +  + + Y  ++  + K
Sbjct: 269 SGSVCS-PDVVTYTSMISGYCK 289


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 202/431 (46%), Gaps = 18/431 (4%)

Query: 176 ELMDSQGRIAEMLEILEKMR--RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           E +   G++    E+ ++MR  RN+   + ++YTAMI+ L     +DA   +  E+ +  
Sbjct: 193 EALVRAGQLDAAREVFDEMRESRNVALNE-YSYTAMIKALCKAGKVDAGFEMLAELWRAG 251

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           ++  V+ Y  L+  LCK GRV     L   M++ G+      +G+LI GL    + G+  
Sbjct: 252 LQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVG 311

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            +L+++   G   +  IYN +IG  CR     +A +LF+  V   + P   T N +    
Sbjct: 312 IVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKAL 371

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADL-EKFFEFLVGKEERIMMALDVFEELKGKGYS-S 411
            + G M+   ++L  M  +  +V   L      +L+ +  R+   + +  E+  +G   +
Sbjct: 372 CKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPN 431

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC-- 469
            P+    M  L + G+ ++A+ ++ K     L VN  + +  I    E   + EA +   
Sbjct: 432 DPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKYMKEATKVIQ 491

Query: 470 --HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
              NK IE+  +     YN + +G CK  +++ A+ L  D +      P  F +  T+LH
Sbjct: 492 TMLNKGIELDSI----TYNIMIRGCCKDSKMEEAIKLHGD-MTRRGFKPDLFTFN-TLLH 545

Query: 528 V-CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
             C  G+ E+   +L++M  EG  P+ V    II G CK   + +A++  T L +R L  
Sbjct: 546 AYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGL-- 603

Query: 587 EANTIVYDEIL 597
           + N  +Y+ ++
Sbjct: 604 KPNVFIYNALI 614



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/473 (20%), Positives = 196/473 (41%), Gaps = 47/473 (9%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD+    GR+ E   +  +M +    P V  +  +I  LA          V +EM++  
Sbjct: 262 LMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLG 321

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           V  + + Y  LI   C+ G   +   LF EM    +      Y ++ + L  EG++ +A 
Sbjct: 322 VSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAE 381

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGL----------------------------------- 318
            +L+D++  G     G++N+++  L                                   
Sbjct: 382 RILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRE 441

Query: 319 -CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
            C+  +  +A  ++  T+   L  + +T N L+    E   M    K++  M  L   + 
Sbjct: 442 LCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKYMKEATKVIQTM--LNKGIE 499

Query: 378 ADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL 434
            D   +   + G  K+ ++  A+ +  ++  +G+   +  +N L+ A   +G++++  +L
Sbjct: 500 LDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHL 559

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
             +M+   L+ + +S+   I  H ++ DI +A E   ++++    P+V  YN L  G  +
Sbjct: 560 LDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGR 619

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
            G+I  A+  V     N    PT   Y   +  +C +G  E+   + ++  +       +
Sbjct: 620 NGDISGAIDAVETMKSN-GIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVI 678

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
             + +I G CK G + EA   F  +R R +    N + Y  ++  + K   ++
Sbjct: 679 GYTIMIQGYCKLGKMVEAVAYFEEMRSRGI--SPNKLTYTTLMYAYSKSGNSE 729



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 160/359 (44%), Gaps = 8/359 (2%)

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           T +  +L   R L++ + +  EM    +  +       +  LCKGG+      ++ +   
Sbjct: 401 TVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLN 460

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGK-ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
            G+ ++ A    LI GL  EGK  K A  +++ +++ G   D   YN +I G C+  + +
Sbjct: 461 KGLGVNLATSNALIHGLC-EGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKME 519

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +A KL     +    PD  T N LL     +G+M+  F LL QM+     +  D+  +  
Sbjct: 520 EAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKT--EGLQPDIVSYGT 577

Query: 386 FLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            + G  K + I  A +   EL  +G   +V IYN L+G     G++  A+     M+   
Sbjct: 578 IIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNG 637

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           ++  ++++   +     +G + EA    ++  E +    V  Y  + +G CK+G++  A+
Sbjct: 638 IQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAV 697

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
               +      S P +  Y   +    +SG +E+  ++ +EM   G  P+ +    +I+
Sbjct: 698 AYFEEMRSRGIS-PNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIA 755



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/355 (21%), Positives = 145/355 (40%), Gaps = 50/355 (14%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            KG   N A+ NAL + L      + A +V + M ++G     +E+           D  
Sbjct: 460 NKGLGVNLATSNALIHGLCEGKYMKEATKVIQTMLNKG-----IEL-----------DSI 503

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  MIR    +  ++  +++  +M +   + D+  + TL+   C  G++     L  +M
Sbjct: 504 TYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQM 563

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K  G+  D   YG +I+G      + KA + L +L+D G + ++ IYN++IGG  R    
Sbjct: 564 KTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDI 623

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
             A    E    + + P   T   L+      G        L +  K  FS A       
Sbjct: 624 SGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAG--------LVEEAKTIFSQA------- 668

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                +E  + +               V  Y I++    ++G++ +A+  F +MR   + 
Sbjct: 669 -----RENNVDLG--------------VIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGIS 709

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
            N L+++  +  + +SG+  EA +  ++++    +P    Y  L     ++  +D
Sbjct: 710 PNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEVNSLD 764



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 68/192 (35%), Gaps = 19/192 (9%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAE 186
           +G K N   YNAL     RN     A    E M S G                    + E
Sbjct: 601 RGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEE 660

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
              I  + R N     V  YT MI+       +   +  +EEM+   +  + + Y TL+ 
Sbjct: 661 AKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMY 720

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
              K G      +LF EM  +G++ D   YG LI        + K      +L       
Sbjct: 721 AYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEVNSLDKDIGHTAELSSGALTK 780

Query: 307 DLGIYNSIIGGL 318
           D  +YN +  G+
Sbjct: 781 DDRMYNILSNGI 792



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 52/112 (46%)

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
           G +  A +    +      PS+   N   + L + G++DAA  +  +   +      E+ 
Sbjct: 164 GSLCRAADAFRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYS 223

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           Y   I  +C++G+ +   E+L E+ + G  P  V  + ++  +CK G +EEA
Sbjct: 224 YTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEA 275


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/451 (22%), Positives = 198/451 (43%), Gaps = 11/451 (2%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           L+ +  R  ++  ++E M+++  K D   +  +I +      ++  L+      K+    
Sbjct: 4   LLGAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRP 63

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
               Y ++I    KGG V  G  ++++M +   + D   + +LI+ L    +V +AC++ 
Sbjct: 64  TAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVF 123

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            D+       D+  Y  +I  L  + + D   KLFE        P+  T + ++      
Sbjct: 124 GDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSA 183

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN 416
           GR+D    +  QM +      A          GK  ++  A D     K + +++   YN
Sbjct: 184 GRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFVG--KSRSFTNEVTYN 241

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+ +L   G+++  + LFG+M+   L  N L+++I I+    +G + +  + + ++++ 
Sbjct: 242 SLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDN 301

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
                +   N +   L K G ++AA  L +D      +  T   Y + I  + R+G+ + 
Sbjct: 302 DIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADT-VTYNILINGLGRAGKLDA 360

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
              +L EM + GC PN +  + +IS   K   L  A ++F  ++ER +    N + Y  +
Sbjct: 361 AGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGV--APNVVSYSSL 418

Query: 597 LIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
           +    K    D  +S      L  ++KA+GC
Sbjct: 419 IEGFGKAGRTDAAIS------LFREMKAEGC 443



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 186/408 (45%), Gaps = 18/408 (4%)

Query: 177 LMDSQGR---IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L+DS  +   + E   +   M +    PDV+ YT +IR L     +DA ++++E M    
Sbjct: 106 LIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQG 165

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
            + ++  Y +++      GRV    ++F++M + G+  D   Y +LI+     G++ +A 
Sbjct: 166 CQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAF 225

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           D +     S    +   YNS++  L R        +LF       L  +  T   L+   
Sbjct: 226 DFVGK---SRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERL 282

Query: 354 AEMGRMDNFFKLLAQM--EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS 411
              GR+++ ++L  +M    +K+ +   +    + L  K  R+  A ++F+++K KG ++
Sbjct: 283 GWAGRVEDVWQLYLEMVDNDIKYDIVT-INNVLDCL-SKAGRVEAAFELFQDMKFKGLNA 340

Query: 412 VPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
             + YNIL+  L   G++  A  L  +M       N ++++  I  + +  ++  A    
Sbjct: 341 DTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLF 400

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHV 528
            ++ E    P+V +Y+ L +G  K G  DAA+ L R+     A G  P    Y L I  +
Sbjct: 401 LEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREM---KAEGCPPNHVTYNLLIDCL 457

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
            R+G     +E L EM   GC   +V  S ++    ++  +EEA+  F
Sbjct: 458 IRAGRFGAAMEYLREMRDAGCQMGKVTKSLLVRIPPQY--MEEAQSFF 503



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 16/160 (10%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K KG   +  +YN L      N L RA       +D+ G       +L +M  N C P++
Sbjct: 334 KFKGLNADTVTYNILI-----NGLGRAGK-----LDAAG------ALLLEMEENGCAPNI 377

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  +I       NL A  R++ EMK+  V  +V++Y +LI G  K GR      LFRE
Sbjct: 378 ITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFRE 437

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           MK  G   +   Y +LI+ L+  G+ G A + L+++ D+G
Sbjct: 438 MKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAG 477



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 105/232 (45%), Gaps = 17/232 (7%)

Query: 139 FHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNL 198
           F + GK + +  N  +YN+L   L R                +G I  ++E+  +M+   
Sbjct: 225 FDFVGKSRSFT-NEVTYNSLLSSLGR----------------KGDIQGLMELFGQMKAKG 267

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
              +   Y  +I  L     ++   +++ EM  + ++ D++    ++  L K GRV    
Sbjct: 268 LVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAF 327

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           ELF++MK  G+  D   Y +LI GL   GK+  A  LL ++ ++G   ++  YN++I   
Sbjct: 328 ELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSY 387

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
            +      A +LF    +  +AP+  + + L+    + GR D    L  +M+
Sbjct: 388 GKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMK 439



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 67/156 (42%)

Query: 172 DQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK 231
           + V + +   GR+    E+ + M+      D   Y  +I  L     LDA   +  EM++
Sbjct: 311 NNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEE 370

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
           +    +++ Y TLI    K   +     LF EMKE G+  +   Y  LIEG    G+   
Sbjct: 371 NGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDA 430

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           A  L +++   G   +   YN +I  L R  +F  A
Sbjct: 431 AISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAA 466


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/479 (21%), Positives = 204/479 (42%), Gaps = 52/479 (10%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           + KG   N  +YN +   + R                +GR+ +  EIL ++     +PD+
Sbjct: 203 RAKGCTPNIVTYNVIINGMCR----------------EGRVDDAKEILNRLSSYGFQPDI 246

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            +YT +++ L A R  D    ++ EM       + + +  L+   C+GG V R  ++ ++
Sbjct: 247 VSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQ 306

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M ++G   +  +  ++I  +  +G+V  A D L ++   G   D   Y +++ GLCR  +
Sbjct: 307 MSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGR 366

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           ++ A +L    V+ +  P+  T N  +    + G ++   KL+  M +   SV       
Sbjct: 367 WEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNA 426

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
                  + R+  AL++F  L  +   +   Y  L+  L     +  A  L   M   + 
Sbjct: 427 LVHGFCVQGRVDSALELFNNLPCE--PNTITYTTLLTGLCHAERLDAAAELLAGMIQKDC 484

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
            +N+++F++ +    + G + EA E  N+++E    P++  +N L  G+ K    + A+ 
Sbjct: 485 PLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALE 544

Query: 504 LVRDCLG--------------NVASGPTEFKYALTILH--------------------VC 529
           L+   +               +V S     + A+ +LH                    +C
Sbjct: 545 LLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALC 604

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           +  E ++ I+    M   GC PNE     +I G+   G L+EAR V + L  + +L+++
Sbjct: 605 KRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGVLSKS 663



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 171/398 (42%), Gaps = 7/398 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD + YT +IR L     +   L + ++M +   +  V+ Y  L+  +CK         +
Sbjct: 139 PDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNV 198

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             EM+  G   +   Y V+I G+  EG+V  A ++L  L   G++ D+  Y +++ GLC 
Sbjct: 199 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCA 258

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            +++D    LF   V     P+  T + L+      G ++   ++L QM +   +    L
Sbjct: 259 ARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTL 318

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMR 439
                  + K+ R+  A D    +   G +   I Y  ++  L   G  + A  L  +M 
Sbjct: 319 CNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMV 378

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
             N   N ++F+  I    + G I +A +    + E      +  YN L  G C  G +D
Sbjct: 379 RKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVD 438

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           +A+ L      N+   P    Y   +  +C +   +   E+L  M Q+ CP N V  + +
Sbjct: 439 SALEL----FNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVL 494

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +S  C+ G +EEA ++   + E       N I ++ +L
Sbjct: 495 VSFFCQKGFVEEAMELVNQMMEHG--CTPNLITFNTLL 530



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/453 (20%), Positives = 195/453 (43%), Gaps = 24/453 (5%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ + L +L+ M +  C+P V  YT ++  +         + V +EM+      +++ 
Sbjct: 154 RGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVT 213

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G+C+ GRV    E+   +   G   D   Y  +++GL    +      L  ++V
Sbjct: 214 YNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMV 273

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D     +   ++ ++   CR    ++A ++ +   Q    P+ +  N ++    + GR+D
Sbjct: 274 DKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVD 333

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNI 417
           + +  L  M    +    D   +   L G  +  R   A ++  E+  K      + +N 
Sbjct: 334 DAYDFLNNMG--MYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNT 391

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
            +  L + G +++A+ L   M      V  ++++  +      G +  A E  N    + 
Sbjct: 392 FICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNN---LP 448

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSG 532
             P+   Y  L  GLC    +DAA      M+ +DC  N  +      + + +   C+ G
Sbjct: 449 CEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVT------FNVLVSFFCQKG 502

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
             E+ +E++N+M + GC PN +  + ++ G+ K    EEA ++   L  + +    +TI 
Sbjct: 503 FVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGV--SLDTIT 560

Query: 593 YD---EILIEHMKKKTADLVLSGLKFFGLESKL 622
           Y    ++L    + + A  +L  ++  G+  K+
Sbjct: 561 YSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKV 593



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 160/393 (40%), Gaps = 38/393 (9%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           +AE   ++E        PDV+  T +IR L          RV    +      DV AY T
Sbjct: 55  LAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNT 114

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+ G C+ GR+     L   M    +  D   Y  +I GL   G+VG A  LL D++  G
Sbjct: 115 LVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRG 171

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            +  +  Y  ++  +C+   F +A  + +        P+  T N ++      GR+D+  
Sbjct: 172 CQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAK 231

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALL 423
           ++L ++    F    D+  +   L G     + A   ++++K                  
Sbjct: 232 EILNRLSSYGFQ--PDIVSYTTVLKG-----LCAARRWDDVK------------------ 266

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
                     LF +M       N ++F + ++     G +  A +   ++ +    P+  
Sbjct: 267 ---------VLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTT 317

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
             N +   +CK G +D A   + + +G     P    Y   +  +CR+G  E   E+L E
Sbjct: 318 LCNIVINAICKQGRVDDAYDFLNN-MGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPE 376

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           M ++ CPPNEV  +  I  +C+ G +E+A K+ 
Sbjct: 377 MVRKNCPPNEVTFNTFICILCQKGLIEQAIKLI 409


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 191/449 (42%), Gaps = 13/449 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G + E L+ LE+M      PDV A T++IR            R+ E ++      DV+ 
Sbjct: 119 NGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVIT 178

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK G + +  E+   M    +  D   Y  ++  L   GK+ +A ++L   +
Sbjct: 179 YNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQL 235

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 D+  Y  +I   C      +A KL +   +    PD  T N L+    + GR+D
Sbjct: 236 QRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLD 295

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
              K L  M                  +    R M A  +  ++  KG S SV  +NIL+
Sbjct: 296 EAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILI 355

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L     + +A+ +  KM       NSLS++  +    +   +  A E    ++     
Sbjct: 356 NFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCY 415

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P +  YN L   LCK G++DAA+ ++   L +    P    Y   I  + + G+ E  +E
Sbjct: 416 PDIVTYNTLLTALCKDGKVDAAVEILNQ-LSSKGCSPVLITYNTVIDGLTKVGKTEYAVE 474

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           +L EM ++G  P+ +  S ++ G+ + G ++EA K+F ++    L  + + + Y+ I++ 
Sbjct: 475 LLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDM--EGLSIKPSAVTYNAIMLG 532

Query: 600 HMKKKTADLVLSGLKFFGLESKLKAKGCK 628
             K +     +  L +      +  KGCK
Sbjct: 533 LCKAQQTSRAIDFLAY------MVEKGCK 555



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 168/357 (47%), Gaps = 17/357 (4%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           L DS G++ E +E+L++  +  C PDV  YT +I     +  +   +++ +EM+K   + 
Sbjct: 218 LCDS-GKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKP 276

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           DV+ Y  LI G+CK GR+    +    M   G   +   + +++  +   G+   A  LL
Sbjct: 277 DVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLL 336

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            D++  G    +  +N +I  LCR +   +A  + E   +    P+  + NPLL    + 
Sbjct: 337 SDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQE 396

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI 414
            +MD   + L  M  +      D+  +   L    K+ ++  A+++  +L  KG S V I
Sbjct: 397 KKMDRAIEYLEIM--VSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLI 454

Query: 415 -YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN ++  L ++G+ + A+ L  +MR   L+ + +++S  ++     G + EA +  + +
Sbjct: 455 TYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDM 514

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTI 525
             +S  PS   YN +  GLCK  +   A+     M+ + C       PTE  Y + I
Sbjct: 515 EGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGC------KPTEATYTILI 565



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 174/386 (45%), Gaps = 9/386 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G I + LE+LE+M      PDV  Y  ++R L     L   + V +   +     DV+ 
Sbjct: 189 SGEIDKALEVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVIT 245

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI   C    V +  +L  EM++ G   D   Y VLI G+  EG++ +A   L ++ 
Sbjct: 246 YTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMP 305

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + ++  +N I+  +C   ++  A +L    ++   +P   T N L+        + 
Sbjct: 306 SYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLG 365

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
               +L +M   K     +   +   L G  +E+++  A++  E +  +G Y  +  YN 
Sbjct: 366 RAIDVLEKMP--KHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNT 423

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ AL + G+V  A+ +  ++         ++++  I    + G    A E   ++    
Sbjct: 424 LLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKG 483

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P +  Y+ L +GL + G++D A+ +  D  G ++  P+   Y   +L +C++ +  + 
Sbjct: 484 LKPDIITYSTLLRGLGREGKVDEAIKIFHDMEG-LSIKPSAVTYNAIMLGLCKAQQTSRA 542

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGM 563
           I+ L  M ++GC P E   + +I G+
Sbjct: 543 IDFLAYMVEKGCKPTEATYTILIEGI 568



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 167/373 (44%), Gaps = 22/373 (5%)

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           L + G +  G +    M   G + D      LI G    GK  KA  +++ L +SG   D
Sbjct: 116 LVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPD 175

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  YN +IGG C+  + DKA ++ E   +  +APD  T N +L    + G++    ++L 
Sbjct: 176 VITYNVLIGGYCKSGEIDKALEVLE---RMSVAPDVVTYNTILRSLCDSGKLKEAMEVLD 232

Query: 368 QMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
           +  +L+     D+  +   +     +  +  A+ + +E++ KG    V  YN+L+  + +
Sbjct: 233 R--QLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICK 290

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G + +A+     M     + N ++ +I ++    +G  ++A    + ++     PSV  
Sbjct: 291 EGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVT 350

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           +N L   LC+   +  A+ ++   +      P    Y   +   C+  + ++ IE L  M
Sbjct: 351 FNILINFLCRKRLLGRAIDVLEK-MPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIM 409

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK---LLTEANTIV--------- 592
              GC P+ V  + +++ +CK G ++ A ++   L  +    +L   NT++         
Sbjct: 410 VSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKT 469

Query: 593 -YDEILIEHMKKK 604
            Y   L+E M++K
Sbjct: 470 EYAVELLEEMRRK 482



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 111/261 (42%), Gaps = 7/261 (2%)

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYT 207
           + +N  SY      ++ N + R+       M S GR  +   +L  M R  C P V  + 
Sbjct: 300 FLNNMPSYGCKPNVITHNIILRS-------MCSTGRWMDAERLLSDMLRKGCSPSVVTFN 352

Query: 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
            +I  L  +R L   + V E+M K     + ++Y  L+ G C+  ++ R  E    M   
Sbjct: 353 ILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSR 412

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           G   D   Y  L+  L  +GKV  A ++L  L   G    L  YN++I GL +V + + A
Sbjct: 413 GCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYA 472

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
            +L E   +  L PD  T + LL      G++D   K+   ME L    +A         
Sbjct: 473 VELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLG 532

Query: 388 VGKEERIMMALDVFEELKGKG 408
           + K ++   A+D    +  KG
Sbjct: 533 LCKAQQTSRAIDFLAYMVEKG 553



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 19/158 (12%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
            +G   +  +YN L   L ++    AA ++   + S+G                   +  
Sbjct: 411 SRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTE 470

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
             +E+LE+MRR   KPD+  Y+ ++R L  E  +D  ++++ +M+   ++   + Y  ++
Sbjct: 471 YAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIM 530

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
           +GLCK  +  R  +    M E G     A Y +LIEG+
Sbjct: 531 LGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGI 568


>gi|242061532|ref|XP_002452055.1| hypothetical protein SORBIDRAFT_04g017800 [Sorghum bicolor]
 gi|241931886|gb|EES05031.1| hypothetical protein SORBIDRAFT_04g017800 [Sorghum bicolor]
          Length = 810

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 189/397 (47%), Gaps = 18/397 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE-RNLDACLRVWEEMKKDLVEADVMA 240
           GR+ E L + ++M    CKPD+F+Y  +++ L  + R  DA   +   ++KD    D + 
Sbjct: 287 GRVEEALHLFDQMP---CKPDIFSYNTVMKGLCRDGRWEDAGTLIAGMVRKD-CPPDEVT 342

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + T+I  LC  G V    E+  +M + G   D   Y  L+  L   G V  A +LL+ + 
Sbjct: 343 FNTVISYLCHRGLVDCAMEVVEQMPKYGCKPDNFTYSALVNALSERGCVDDALELLRTI- 401

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
              ++ +   Y S++ GLCR  ++D   KL    +++ L  D  T   ++ C  + G +D
Sbjct: 402 --PWKPNTVCYRSVLKGLCRADRWDDVGKLVAEMIRNQLNLDEVTFGLIIDCLCQKGLVD 459

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYSSVPIYNIL 418
              ++L +M   KF  + D+  +   + G  E   +  AL++F+ +  K   +V  YN +
Sbjct: 460 YGAEVLREMT--KFGCSPDIIIYNSLINGFSENGSVDDALELFKNMSCK--RNVVTYNYM 515

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L    + + A  L  +M       N ++FS  I    + G +  A E   K+ + + 
Sbjct: 516 LKGLCRAEQWEDAGKLVAEMVKDECLPNEVTFSTLISYLCQKGFVECAIEVFEKMPKYNC 575

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           +P+V  Y+ L  GL     +D A+ L+ D    +   P    Y+  +  +CR+   E   
Sbjct: 576 MPNVIIYSTLINGLSDQECVDDALKLLND----MPCKPDTICYSAALKGLCRAERWEDAG 631

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           E++ EM ++ C P+EV  S +I+ +C  G LE A +V
Sbjct: 632 ELILEMIRKNCLPDEVTFSILINNLCHKGFLESATEV 668



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 195/433 (45%), Gaps = 45/433 (10%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV--------------- 225
           +G +   +E++E+M +  CKPD F Y+A++  L+    +D  L +               
Sbjct: 353 RGLVDCAMEVVEQMPKYGCKPDNFTYSALVNALSERGCVDDALELLRTIPWKPNTVCYRS 412

Query: 226 ----------WE-------EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
                     W+       EM ++ +  D + +  +I  LC+ G V  G E+ REM + G
Sbjct: 413 VLKGLCRADRWDDVGKLVAEMIRNQLNLDEVTFGLIIDCLCQKGLVDYGAEVLREMTKFG 472

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
              D  IY  LI G    G V  A +L K++     + ++  YN ++ GLCR +Q++ A 
Sbjct: 473 CSPDIIIYNSLINGFSENGSVDDALELFKNM---SCKRNVVTYNYMLKGLCRAEQWEDAG 529

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
           KL    V+D+  P+  T + L+    + G ++   ++  +M K  ++   ++  +   + 
Sbjct: 530 KLVAEMVKDECLPNEVTFSTLISYLCQKGFVECAIEVFEKMPK--YNCMPNVIIYSTLIN 587

Query: 389 G--KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
           G   +E +  AL +  ++  K       Y+  +  L      + A  L  +M   N   +
Sbjct: 588 GLSDQECVDDALKLLNDMPCK--PDTICYSAALKGLCRAERWEDAGELILEMIRKNCLPD 645

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
            ++FSI I      G +  A E    +++   +P+V  Y+ L  G  +    + A+ L+R
Sbjct: 646 EVTFSILINNLCHKGFLESATEVSELMLKYECMPNVFIYSSLINGFAEQYRAEDALQLLR 705

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
               N+   P    Y+  +  +CR+   E   E++ EM ++ CP +E   S +I  +C++
Sbjct: 706 ----NMPCEPDTICYSAALKGLCRAKRWEDARELIAEMFRKQCPLDEATFSMLIGSLCQN 761

Query: 567 GTLEEARKVFTNL 579
           G ++ A +VF  +
Sbjct: 762 GLVDMATEVFEQM 774



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 102/452 (22%), Positives = 184/452 (40%), Gaps = 52/452 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+A+   +L  +  +    DV  Y  ++     E  L+   R+  +M       +    
Sbjct: 151 GRLADAERMLASLALSG-SADVVTYNTLVAGYCREGRLNDARRLVADMP---FAPNSYTN 206

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD--- 298
            TL+ GLC         EL  EM  +G   +   +G++I  L   G   +A  +L     
Sbjct: 207 STLLKGLCSNKEWDDAEELLSEMIRSGCPPNDLTFGMIIHSLCQNGLADRAMGVLDQMSK 266

Query: 299 ----------------LVDSGY-------------RADLGIYNSIIGGLCRVKQFDKAYK 329
                           L + G              + D+  YN+++ GLCR  +++ A  
Sbjct: 267 CRCTRGVIVYNEIISCLAELGRVEEALHLFDQMPCKPDIFSYNTVMKGLCRDGRWEDAGT 326

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG 389
           L    V+ D  PD  T N ++      G +D   +++ QM   K+    D   +   +  
Sbjct: 327 LIAGMVRKDCPPDEVTFNTVISYLCHRGLVDCAMEVVEQMP--KYGCKPDNFTYSALVNA 384

Query: 390 KEER--IMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS 447
             ER  +  AL++   +  K   +   Y  ++  L           L  +M    L ++ 
Sbjct: 385 LSERGCVDDALELLRTIPWK--PNTVCYRSVLKGLCRADRWDDVGKLVAEMIRNQLNLDE 442

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
           ++F + I C  + G +    E   ++ +    P +  YN L  G  + G +D A+ L ++
Sbjct: 443 VTFGLIIDCLCQKGLVDYGAEVLREMTKFGCSPDIIIYNSLINGFSENGSVDDALELFKN 502

Query: 508 --CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
             C  NV +    + Y L  L  CR+ + E   +++ EM ++ C PNEV  S +IS +C+
Sbjct: 503 MSCKRNVVT----YNYMLKGL--CRAEQWEDAGKLVAEMVKDECLPNEVTFSTLISYLCQ 556

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            G +E A +VF  + +   +   N I+Y  ++
Sbjct: 557 KGFVECAIEVFEKMPKYNCM--PNVIIYSTLI 586



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 114/278 (41%), Gaps = 31/278 (11%)

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC-CAEMGRMDNFFKLLAQMEKL 372
           +I  LC   + D A ++   + +   A D  T N L+   C   GR+ +  ++LA    L
Sbjct: 108 LIKKLCAAGRLDDAERVLGASERAGTA-DAVTRNTLVAGYCRAGGRLADAERMLAS---L 163

Query: 373 KFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKK 430
             S +AD+  +   + G  +E R+  A  +  ++     S     + L+  L    E   
Sbjct: 164 ALSGSADVVTYNTLVAGYCREGRLNDARRLVADMPFAPNSYT--NSTLLKGLCSNKEWDD 221

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESG---------DILEACECHNKIIEMSQVPS 481
           A  L  +M       N L+F + I    ++G         D +  C C   +I       
Sbjct: 222 AEELLSEMIRSGCPPNDLTFGMIIHSLCQNGLADRAMGVLDQMSKCRCTRGVI------- 274

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
              YN +   L ++G ++ A+ L       +   P  F Y   +  +CR G  E    ++
Sbjct: 275 --VYNEIISCLAELGRVEEALHL----FDQMPCKPDIFSYNTVMKGLCRDGRWEDAGTLI 328

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             M ++ CPP+EV  + +IS +C  G ++ A +V   +
Sbjct: 329 AGMVRKDCPPDEVTFNTVISYLCHRGLVDCAMEVVEQM 366



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q R  + L++L  M    C+PD   Y+A ++ L   +  +    +  EM +     D   
Sbjct: 694 QYRAEDALQLLRNMP---CEPDTICYSAALKGLCRAKRWEDARELIAEMFRKQCPLDEAT 750

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +  LI  LC+ G V    E+F +M   G   +R I+  L+ G   + +V +   LL  +
Sbjct: 751 FSMLIGSLCQNGLVDMATEVFEQMSVYGCSPNRKIHSSLVNGYSEQRRVDEGLKLLSSM 809


>gi|242095336|ref|XP_002438158.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
 gi|241916381|gb|EER89525.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
          Length = 607

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 175/383 (45%), Gaps = 14/383 (3%)

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           DV  + +L+  L + G +    ELF  M+E  +  D   YG+L+  L   G VG A  +L
Sbjct: 130 DVSTFNSLLSALGRAGNLRGMTELFTSMREASVKPDIVTYGILLNRLCKAGLVGDALKVL 189

Query: 297 KDLVDSGYR--ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD--DLAPDFSTVNPLLVC 352
             +   G    AD+ I N+++ GLC++ +   A    +  ++     AP+  T N L   
Sbjct: 190 DRMSSPGSDVCADIVILNTVVDGLCKIGRLQDAIVFVDERMRQVHGCAPNTVTYNCLADA 249

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE-----LKGK 407
           C  +G +D   +++ +MEK   +            + +  R+  ALD F E     L+ +
Sbjct: 250 CCRVGDIDMACQIVERMEKEGVTPNVITMNTIVGGLCRVGRVGAALDFFREKRTTWLEAR 309

Query: 408 GYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
           G +    Y+ L+ A L    V  A+ LF +M       +++ +   I    ++G +++AC
Sbjct: 310 GNAVT--YSTLVSAFLHCNNVALAMELFHEMADQGYPPDAVMYFTMISGLTQAGRLVDAC 367

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
                + +        AYN L  G C+   +  A  L  +  G     P  + Y   +  
Sbjct: 368 NIAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKG-AGLQPDVYTYNTLLSC 426

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           +C++G+   + E+L  M  +GC P+ V    ++ G CK G  +EA K+F ++ E ++  +
Sbjct: 427 LCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARI--Q 484

Query: 588 ANTIVYDEILIEHMKKKTADLVL 610
            NT++Y+ ++    K +  D+ +
Sbjct: 485 PNTVIYNTLIDFLCKSREVDVAI 507



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 113/498 (22%), Positives = 212/498 (42%), Gaps = 41/498 (8%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177
           +  L++++L   ++P  A+ F   +        + +++N+L   L R             
Sbjct: 97  SASLLSKLLARFSSPADAASFLRDSLAAGAPAPDVSTFNSLLSALGR------------- 143

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK--DLVE 235
               G +  M E+   MR    KPD+  Y  ++  L     +   L+V + M      V 
Sbjct: 144 ---AGNLRGMTELFTSMREASVKPDIVTYGILLNRLCKAGLVGDALKVLDRMSSPGSDVC 200

Query: 236 ADVMAYVTLIMGLCKGGR----VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
           AD++   T++ GLCK GR    +V   E  R++  +G   +   Y  L +     G +  
Sbjct: 201 ADIVILNTVVDGLCKIGRLQDAIVFVDERMRQV--HGCAPNTVTYNCLADACCRVGDIDM 258

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL-----APDFSTV 346
           AC +++ +   G   ++   N+I+GGLCRV +   A   F       L     A  +ST+
Sbjct: 259 ACQIVERMEKEGVTPNVITMNTIVGGLCRVGRVGAALDFFREKRTTWLEARGNAVTYSTL 318

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEEL 404
               + C  +      F  +A           D   +F  + G  +  R++ A ++   +
Sbjct: 319 VSAFLHCNNVALAMELFHEMADQ-----GYPPDAVMYFTMISGLTQAGRLVDACNIAASM 373

Query: 405 KGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
           K  G+      YNIL+G       + +A  LF +M+G  L+ +  +++  + C  ++GD 
Sbjct: 374 KKAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLCKAGDF 433

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
               E    +I+    PSV  +  L  G CK G+ D A+ + R  +G     P    Y  
Sbjct: 434 SAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRS-MGEARIQPNTVIYNT 492

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I  +C+S E +  I++ +EM +   P N    +A++ G+      E+A ++   ++E +
Sbjct: 493 LIDFLCKSREVDVAIKLFDEMRENNVPANVTTYNALLKGLQDKNMPEKAFELMDQMKEER 552

Query: 584 LLTEANTIVYDEILIEHM 601
              +  T+   ++L+E +
Sbjct: 553 CTPDYVTM---DVLMEWL 567



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 146/323 (45%), Gaps = 7/323 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA--DVM 239
           G I    +I+E+M +    P+V     ++  L     + A L  + E +   +EA  + +
Sbjct: 254 GDIDMACQIVERMEKEGVTPNVITMNTIVGGLCRVGRVGAALDFFREKRTTWLEARGNAV 313

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TL+        V    ELF EM + G   D  +Y  +I GL   G++  AC++   +
Sbjct: 314 TYSTLVSAFLHCNNVALAMELFHEMADQGYPPDAVMYFTMISGLTQAGRLVDACNIAASM 373

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
             +G++ D   YN +IGG CR K+  +A++LFE      L PD  T N LL C  + G  
Sbjct: 374 KKAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLCKAGDF 433

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYN 416
               +LL  M  +       +  F   + G  K  +   AL +F  + + +   +  IYN
Sbjct: 434 SAVDELLGNM--IDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPNTVIYN 491

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  L +  EV  A+ LF +MR  N+  N  +++  ++   +     +A E  +++ E 
Sbjct: 492 TLIDFLCKSREVDVAIKLFDEMRENNVPANVTTYNALLKGLQDKNMPEKAFELMDQMKEE 551

Query: 477 SQVPSVAAYNCLTKGLCKIGEID 499
              P     + L + L +IGE +
Sbjct: 552 RCTPDYVTMDVLMEWLPEIGETE 574



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 132/289 (45%), Gaps = 20/289 (6%)

Query: 130 NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLE 189
           NN  LA + FH    Q GY  +   Y  +   L++                 GR+ +   
Sbjct: 326 NNVALAMELFHEMADQ-GYPPDAVMYFTMISGLTQ----------------AGRLVDACN 368

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           I   M++   K D  AY  +I     ++ L    +++EEMK   ++ DV  Y TL+  LC
Sbjct: 369 IAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLC 428

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K G      EL   M ++G       +G L+ G    GK  +A  + + + ++  + +  
Sbjct: 429 KAGDFSAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPNTV 488

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
           IYN++I  LC+ ++ D A KLF+   ++++  + +T N LL    +    +  F+L+ QM
Sbjct: 489 IYNTLIDFLCKSREVDVAIKLFDEMRENNVPANVTTYNALLKGLQDKNMPEKAFELMDQM 548

Query: 370 EKLKFSVA-ADLEKFFEFL--VGKEERIMMALDVFEELKGKGYSSVPIY 415
           ++ + +     ++   E+L  +G+ ER+   ++  +E  G   +  P +
Sbjct: 549 KEERCTPDYVTMDVLMEWLPEIGETERLKCFMEQRDEKGGAKLTMKPPF 597


>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
 gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 196/424 (46%), Gaps = 31/424 (7%)

Query: 119 PDLVAEVL-KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV--- 174
           P L+  VL +  +   L  +FF WA KQ GY H++    ++   LS+   F A   +   
Sbjct: 97  PGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEE 156

Query: 175 -----PELMD------------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER 217
                PEL++            S   + + +E+L++M +   +PD + +  ++  L    
Sbjct: 157 MRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNG 216

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
           ++    +V+E+M++     ++  + +L+ G C+ G+++   E+  +MKE G+  D  ++ 
Sbjct: 217 SVKEASKVFEDMREKF-PPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFT 275

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV-KQFDKAYKLFEVTVQ 336
            L+ G    GK+  A DL+ D+   G+  ++  Y  +I  LCR  K+ D+A ++F    +
Sbjct: 276 NLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMER 335

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERI 394
                D  T   L+    + G +D  + +L  M K    V      + + +V   K+E+ 
Sbjct: 336 YGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKK--GVMPSQVTYMQIMVAHEKKEQF 393

Query: 395 MMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
              L++ E++K +G +  + IYN+++    ++GEVK+A+ L+ +M    L     +F I 
Sbjct: 394 EECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIM 453

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML--VRDCLGN 511
           I      G ++EAC  H K +    + S   Y  L   L  +   D   M   V  C+ N
Sbjct: 454 INGFTSQGFLIEACN-HFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDVWSCISN 512

Query: 512 VASG 515
             S 
Sbjct: 513 KTSS 516



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 145/320 (45%), Gaps = 41/320 (12%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA-AERNLDACLRVWEEMKKDLVEADVMA 240
           G++A+  +++  MR+   +P+V  YT +I+ L   E+ +D  +RV+ EM++   EAD++ 
Sbjct: 285 GKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVT 344

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK G + +G+ +  +M++ G++  +  Y  ++     + +  +  +L++ + 
Sbjct: 345 YTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMK 404

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   DL IYN +I   C++ +  +A +L+     + L+P                 +D
Sbjct: 405 RRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPG----------------VD 448

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
            F  ++       F                   ++ A + F+E+  +G  S P Y  L  
Sbjct: 449 TFVIMINGFTSQGF-------------------LIEACNHFKEMVSRGIFSAPQYGTLKS 489

Query: 421 ALLEIG-----EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
            L  +      E+ K ++     +  + E+N  +++I I      G + EAC     ++E
Sbjct: 490 LLNNLVRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEACSYCLDMME 549

Query: 476 MSQVPSVAAYNCLTKGLCKI 495
           M  +P    Y  L KGL K+
Sbjct: 550 MDLMPQPNTYAKLMKGLNKL 569



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 4/141 (2%)

Query: 173 QVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
           Q+    + + +  E LE++EKM+R  C PD+  Y  +IR+      +   +R+W EM+ +
Sbjct: 382 QIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEAN 441

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV---LIEGLVGEGKV 289
            +   V  +V +I G    G ++     F+EM   GI      YG    L+  LV + K+
Sbjct: 442 GLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIF-SAPQYGTLKSLLNNLVRDDKL 500

Query: 290 GKACDLLKDLVDSGYRADLGI 310
             A D+   + +     +L +
Sbjct: 501 EMAKDVWSCISNKTSSCELNV 521


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 191/409 (46%), Gaps = 8/409 (1%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           + D++ +  +I        +   L +  +M K   E D +   +L+ G C+  RV     
Sbjct: 117 RNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 176

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L  +M E G   D   Y  +I+ L    +V  A D  K++   G R ++  Y +++ GLC
Sbjct: 177 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLC 236

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
              ++  A +L    ++  + P+  T + LL    + G++    +L  +M  ++ S+  D
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM--VRMSIDPD 294

Query: 380 LEKFFEFLVGK--EERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFG 436
           +  +   + G    +RI  A  +F+ +  KG  + V  YN L+    +   V+  + LF 
Sbjct: 295 IVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 354

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M    L  N+++++  IQ   ++GD+ +A E  +++      P +  YN L  GLC  G
Sbjct: 355 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNG 414

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           E++ A+++  D +           Y   I  +C++G+ E+   +   ++ +G  P+ V  
Sbjct: 415 ELEKALVIFED-MQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTY 473

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI--EHMKK 603
           + ++SG+C  G L E   ++T +++  L+    T+   +I +  E +KK
Sbjct: 474 TTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKK 522



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 162/322 (50%), Gaps = 11/322 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + R+++ + +++KM     KPD+ AY A+I  L   + ++     ++E+++  +  +V+ 
Sbjct: 168 RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVT 227

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ GLC   R      L  +M +  I  +   Y  L++  V  GKV +A +L +++V
Sbjct: 228 YTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV 287

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 D+  Y+S++ GLC   + D+A ++F++ V      D  + N L+    +  R++
Sbjct: 288 RMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVE 347

Query: 361 NFFKLLAQMEK---LKFSVAAD--LEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPI 414
           +  KL  +M +   +  +V  +  ++ FF+   G  ++   A + F ++   G S  +  
Sbjct: 348 DGMKLFREMSQRGLVSNTVTYNTLIQGFFQ--AGDVDK---AQEFFSQMDFFGISPDIWT 402

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YNIL+G L + GE++KAL +F  M+   ++++ ++++  I+   ++G + EA      + 
Sbjct: 403 YNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLS 462

Query: 475 EMSQVPSVAAYNCLTKGLCKIG 496
                P +  Y  +  GLC  G
Sbjct: 463 LKGLKPDIVTYTTMMSGLCTKG 484



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 153/370 (41%), Gaps = 63/370 (17%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------------PELMDS---QGRI 184
           ++KG + N  +Y AL   L  ++ +  A ++                  L+D+    G++
Sbjct: 217 ERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKV 276

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  E+ E+M R    PD+  Y++++  L     +D   ++++ M      ADV++Y TL
Sbjct: 277 LEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 336

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK  RV  G +LFREM + G++ +   Y  LI+G    G V KA +    +   G 
Sbjct: 337 INGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI 396

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  YN ++GGLC   + +KA  +FE   + ++  D  T   ++    + G+++  + 
Sbjct: 397 SPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWS 456

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE 424
           L   +                                  LKG     +  Y  +M  L  
Sbjct: 457 LFCSL---------------------------------SLKGLK-PDIVTYTTMMSGLCT 482

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G + +   L+ KM+   L  N         C +  GDI  + E   K++     PS+  
Sbjct: 483 KGLLHEVEALYTKMKQEGLMKN--------DCTLSDGDITLSAELIKKMLSCGYAPSLLK 534

Query: 485 YNCLTKGLCK 494
              +  G+CK
Sbjct: 535 D--IKSGVCK 542


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 192/427 (44%), Gaps = 17/427 (3%)

Query: 180 SQGRIAEMLEILEKM---RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           ++ R  E LE+L  M   +   C P+V +Y  +I     E  +D    ++ EM    ++ 
Sbjct: 177 NEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQP 236

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           +V+ Y T+I GLCK   V R   +F++M + G+  D   Y  LI G +  GK  +   +L
Sbjct: 237 NVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRML 296

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
           +++   G + D   Y S++  LC   +  +A  LF+  ++  + P+ +    L+   A  
Sbjct: 297 EEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATK 356

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIY 415
           G +     LL  M +   S    +         K+  I  A+ +F ++K +G S  V  Y
Sbjct: 357 GALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNY 416

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKI 473
             L+ AL ++G V  A+  F +M    +  N   F+  +   C V+  +  +A E + ++
Sbjct: 417 GALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWE--KAKEFYFEM 474

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           +     P V  +N +   LC  G++  A  L+ D +  V + P    Y   I   C  G 
Sbjct: 475 LNQGIRPDVVFFNTILCNLCTKGQVMKAQRLI-DLMERVGTRPGVISYTTLIGGHCLVGR 533

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT--- 590
            ++  + L+ M   G  P+E   + ++ G C+ G +++A  VF     R++L    T   
Sbjct: 534 IDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVF-----REMLRNGITPGV 588

Query: 591 IVYDEIL 597
           + Y  IL
Sbjct: 589 VTYSTIL 595



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 181/408 (44%), Gaps = 14/408 (3%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           + ++M     KPD   Y  +I    +       +R+ EEM    ++ D   Y +L+  LC
Sbjct: 260 VFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLC 319

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
             GR      LF  M   GI  + AIYG+LI G   +G + +  DLL  +V++G   D  
Sbjct: 320 NNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHH 379

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
           I+N I     +    D+A  +F    Q  L+PD      L+    ++GR+D+      QM
Sbjct: 380 IFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQM 439

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
             +   VA ++  F   + G    ++   A + + E+  +G    V  +N ++  L   G
Sbjct: 440 --MNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKG 497

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
           +V KA  L   M  +      +S++  I  H   G I EA +  + ++ +   P    YN
Sbjct: 498 QVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYN 557

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH----VCRSGEAEKIIEVLN 542
            L  G C+ G ID A  + R+ L N  + P    Y+ TILH      R  EA+   E+  
Sbjct: 558 TLLHGYCRAGRIDDAYGVFREMLRNGIT-PGVVTYS-TILHGLFTTRRFSEAK---ELYL 612

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            M   G   N  I + I++G+ K+  ++EA K+F +L  +    E  T
Sbjct: 613 NMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITT 660



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 106/477 (22%), Positives = 191/477 (40%), Gaps = 60/477 (12%)

Query: 136 SKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG------------- 182
           ++F   +  +KG K N A Y  L +  +          +  LM   G             
Sbjct: 327 ARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFT 386

Query: 183 ------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
                  I E + I  KM++    PDV  Y A+I  L     +D  +  + +M  + V  
Sbjct: 387 AYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAP 446

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           ++  + +L+ GLC   +  +  E + EM   GI  D   +  ++  L  +G+V KA  L+
Sbjct: 447 NIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLI 506

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             +   G R  +  Y ++IGG C V + D+A K  +V +   L PD  T N LL      
Sbjct: 507 DLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRA 566

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVP 413
           GR+D+ + +  +M  L+  +   +  +   L G     R   A +++  +   G   ++ 
Sbjct: 567 GRIDDAYGVFREM--LRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIW 624

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           IYNI++  L +   V +A  LF  +   + ++   +F+I I    +SG   +A       
Sbjct: 625 IYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDA------- 677

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
             M    ++++Y  +                           P  F Y L   ++   G 
Sbjct: 678 --MHLFATISSYGLV---------------------------PDVFTYCLIAENLIEEGY 708

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            E+  ++ + M + G  PN  + +A++  +   G +  A      L E+    EA+T
Sbjct: 709 LEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLCKLDEKNFSLEAST 765



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 139/290 (47%), Gaps = 27/290 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMI-------RVLAAERNLDACLRVWEEMKKD 232
           ++G++ +   +++ M R   +P V +YT +I       R+  A ++LD  L V       
Sbjct: 495 TKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVG------ 548

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            ++ D   Y TL+ G C+ GR+   + +FREM  NGI      Y  ++ GL    +  +A
Sbjct: 549 -LKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEA 607

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
            +L  +++ SG + ++ IYN I+ GL +    D+A+KLF+     D   + +T N ++  
Sbjct: 608 KELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGA 667

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL-----DVFEELKGK 407
             + GR ++   L A +    + +  D+   F + +  E  I         D+F  ++  
Sbjct: 668 LFKSGRNEDAMHLFATIS--SYGLVPDV---FTYCLIAENLIEEGYLEEFDDLFSAMEKS 722

Query: 408 GYS-SVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAI 454
           G + +  + N L+  LL  G++ +A     K+  +  +LE ++ +  I++
Sbjct: 723 GTTPNSRMLNALVRRLLHRGDITRAGAYLCKLDEKNFSLEASTTAMLISL 772



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/380 (21%), Positives = 164/380 (43%), Gaps = 13/380 (3%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           V  D   Y  LI   C+ GR+  G   F  + ++G  ++  +   L++GL    ++ +A 
Sbjct: 90  VTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAM 149

Query: 294 DLL-KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD---DLAPDFSTVNPL 349
           D+L K + + G   D+  YN+++ G C  K+ ++A +L  +          P+  +   +
Sbjct: 150 DILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIV 209

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGK 407
           +      G++D  + L  +M  +   +  ++  +   + G  K + +  A  VF+++  K
Sbjct: 210 INGFFTEGQVDKAYNLFLEM--MDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDK 267

Query: 408 GYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           G       YN L+   L IG+ K+ + +  +M    L+ +  ++   +     +G   EA
Sbjct: 268 GVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREA 327

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
               + +I     P+VA Y  L  G    G +     L+   + N  S P    + +   
Sbjct: 328 RFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLS-PDHHIFNIIFT 386

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
              +    ++ + + N+M Q+G  P+ V   A+I  +CK G +++A   F  +    +  
Sbjct: 387 AYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAP 446

Query: 587 EA---NTIVYDEILIEHMKK 603
                N++VY    ++  +K
Sbjct: 447 NIFVFNSLVYGLCTVDKWEK 466



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 16/225 (7%)

Query: 397 ALDVFEELKGKGY-SSVPIYNILMGALLEIG-------EVKKALYLFGKM-RGLNLEV-- 445
           AL +F+ L      +SV  +N L+ A+  +        E +  + LF +M R   ++V  
Sbjct: 33  ALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIKVTP 92

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           +  ++SI I C    G +         I++     +    N L KGLC    +  AM ++
Sbjct: 93  DPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDIL 152

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE---GCPPNEVICSAIISG 562
              +  +   P    Y   +   C    AE+ +E+L+ M       CPPN V  + +I+G
Sbjct: 153 VKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVING 212

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
               G +++A  +F  + +R +  + N + Y  ++    K +  D
Sbjct: 213 FFTEGQVDKAYNLFLEMMDRGI--QPNVVTYTTVIDGLCKAQVVD 255


>gi|255585033|ref|XP_002533225.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526957|gb|EEF29157.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 605

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 194/411 (47%), Gaps = 14/411 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E  E+++ M RN   PDV  YT +I  L  +  +D   R+ +EM+   +   V+ Y
Sbjct: 132 GWLKEAAEVIDIMARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEMENLKLLPHVVTY 191

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G  +    ++G EL  EM+  G+  +   Y V+++  V EGK+  A + L+ + +
Sbjct: 192 NMLINGCFECSSSLKGFELIDEMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEE 251

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-VCCAEMGRMD 360
           SG+  D   +N++  G C+  +  +A+++ +   +  L  +  T+N +L   C E  ++D
Sbjct: 252 SGFSPDCVTFNTLSNGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGER-KLD 310

Query: 361 NFFKLLAQMEKLKF---SVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYN 416
           + +KLL+   K  +    V+        F VGK          ++E+K K    S+  Y 
Sbjct: 311 DAYKLLSSASKRGYFVDEVSYGTLIMGYFKVGKSX-------XWDEMKEKEIIPSIITYG 363

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++G L   G+  +++    ++    L  +  +++  I  +   G + +A    NK+++ 
Sbjct: 364 TMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGYCREGQVDKAFHFRNKMVKK 423

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
           S  P +   N L +GLC  G +D A+ L +  +           +   I  +C  G  E+
Sbjct: 424 SFKPDLFTCNILVRGLCTEGMLDKALKLFKTWISK-GKAIDAVTFNTIISGLCEEGRFEE 482

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
             ++L EM ++   P+    +AI+S +   G ++EA +  + + E+  L +
Sbjct: 483 AFDLLAEMEEKKLGPDCYTHNAILSALADAGRMKEAEEFMSGIVEQGKLQD 533



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 187/421 (44%), Gaps = 19/421 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + +++E + ++ KM+   C PD  +Y  ++ VL  +  L+    +  +MK + +  +   
Sbjct: 61  ENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLFPNRNT 120

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  L+ G CK G +    E+   M  N +L D   Y  LI GL  +GK+ +A  L  ++ 
Sbjct: 121 FNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEME 180

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +      +  YN +I G        K ++L +      + P+  T N ++    + G+MD
Sbjct: 181 NLKLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGKGVKPNAVTYNVVVKWYVKEGKMD 240

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG--YSSVPIYN 416
           N    L +ME+  FS   D   F     G  K  R+  A  + +E+  KG   +SV + N
Sbjct: 241 NAGNELRKMEESGFS--PDCVTFNTLSNGYCKAGRLSEAFRMMDEMSRKGLKMNSVTL-N 297

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++  L    ++  A  L          V+ +S+   I  + + G      E   K I  
Sbjct: 298 TILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKVGKSXXWDEMKEKEI-- 355

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEA 534
             +PS+  Y  +  GLC+ G+ D +   +  C   + SG  P +  Y   IL  CR G+ 
Sbjct: 356 --IPSIITYGTMIGGLCRSGKTDQS---IDKCNELLESGLVPDQTTYNTIILGYCREGQV 410

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTI 591
           +K     N+M ++   P+   C+ ++ G+C  G L++A K+F     +    +A   NTI
Sbjct: 411 DKAFHFRNKMVKKSFKPDLFTCNILVRGLCTEGMLDKALKLFKTWISKGKAIDAVTFNTI 470

Query: 592 V 592
           +
Sbjct: 471 I 471



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/412 (19%), Positives = 168/412 (40%), Gaps = 75/412 (18%)

Query: 194 MRRNLCKPDVFAYTAMIRVLA---AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
           M+R   KP++     +I+ L    ++ ++     ++ ++ K  VE +   +  LI G C 
Sbjct: 1   MKRLHLKPNLLTLNTLIKALVRYPSKPSVYLSKAIFSDVIKLGVEVNTNTFNILICGCCI 60

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
             ++     L  +MK      D   Y  +++ L  +GK+ +A DLL D+ ++G   +   
Sbjct: 61  ENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLFPNRNT 120

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           +N ++ G C++    +A ++ ++  ++++ PD  T   L+    + G++D  F+L  +ME
Sbjct: 121 FNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEME 180

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKK 430
            LK                                      V  YN+L+    E     K
Sbjct: 181 NLKL----------------------------------LPHVVTYNMLINGCFECSSSLK 206

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
              L  +M G  ++ N++++++ ++ +V+ G +  A     K+ E    P    +N L+ 
Sbjct: 207 GFELIDEMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSN 266

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           G CK G +  A                                      +++EM+++G  
Sbjct: 267 GYCKAGRLSEA------------------------------------FRMMDEMSRKGLK 290

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
            N V  + I+  +C    L++A K+ ++  +R    +   + Y  +++ + K
Sbjct: 291 MNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDE--VSYGTLIMGYFK 340



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 62/130 (47%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ +      KM +   KPD+F    ++R L  E  LD  L++++         D + 
Sbjct: 407 EGQVDKAFHFRNKMVKKSFKPDLFTCNILVRGLCTEGMLDKALKLFKTWISKGKAIDAVT 466

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + T+I GLC+ GR     +L  EM+E  +  D   +  ++  L   G++ +A + +  +V
Sbjct: 467 FNTIISGLCEEGRFEEAFDLLAEMEEKKLGPDCYTHNAILSALADAGRMKEAEEFMSGIV 526

Query: 301 DSGYRADLGI 310
           + G   D  I
Sbjct: 527 EQGKLQDQTI 536


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 112/469 (23%), Positives = 207/469 (44%), Gaps = 38/469 (8%)

Query: 115 RRVTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQ 173
           + + P +  EV+K ++NNP +  +F+ ++  +   +H+F +YN L   L +  L   A Q
Sbjct: 65  KNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQ 124

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           + E M S G ++    +L  +  +  +     +   + + + E                 
Sbjct: 125 MFECMKSDG-VSPNNRLLGFLVSSFAEKGKLHFATALLLQSFE----------------- 166

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           VE   M   +L+  L K  RV    +LF E        D   + +LI GL G GK  KA 
Sbjct: 167 VEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKAL 226

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVC 352
           +LL  +   G   D+  YN++I G C+  + +KA ++F +V      +PD  T   ++  
Sbjct: 227 ELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISG 286

Query: 353 CAEMGRMDNFFKLLAQMEKL-------KFSVAAD-LEKFFEFLVGKEER-IMMALDVFEE 403
             + G+M     LL  M +L        F+V  D   K  E L  +E R  M++   F +
Sbjct: 287 YCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPD 346

Query: 404 LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
                   V  +  L+     +G+V +   L+ +M    +  N+ ++SI I        +
Sbjct: 347 --------VVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRL 398

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
           L+A E   ++     +P    YN +  G CK G+++ A ++V + +      P +  + +
Sbjct: 399 LKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEE-MEKKKCKPDKITFTI 457

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
            I+  C  G   + + + ++M   GC P+++  S+++S + K G  +EA
Sbjct: 458 LIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEA 506



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 165/393 (41%), Gaps = 43/393 (10%)

Query: 223 LRVWEEMKKDL-VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
            R WE  +  L +      Y  L   LCK G      ++F  MK +G+  +  + G L+ 
Sbjct: 87  FRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVS 146

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
               +GK+  A  LL  L          + NS++  L ++ + + A KLF+  ++     
Sbjct: 147 SFAEKGKLHFATALL--LQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCN 204

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALD 399
           D  T N L+     +G+ +   +LL  M    F    D+  +   + G  K   +  A +
Sbjct: 205 DTKTFNILIRGLCGVGKAEKALELLGVMSG--FGCEPDIVTYNTLIQGFCKSNELNKASE 262

Query: 400 VFEELKGKGYSS--VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
           +F+++K     S  V  Y  ++    + G++++A  L   M  L +   +++F++ +  +
Sbjct: 263 MFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGY 322

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML------------- 504
            ++G++L A E   K+I     P V  +  L  G C++G++     L             
Sbjct: 323 AKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNA 382

Query: 505 ------------------VRDCLGNVASG---PTEFKYALTILHVCRSGEAEKIIEVLNE 543
                              R+ LG +AS    P  F Y   I   C++G+  +   ++ E
Sbjct: 383 FTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEE 442

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           M ++ C P+++  + +I G C  G + EA  +F
Sbjct: 443 MEKKKCKPDKITFTILIIGHCMKGRMFEAVSIF 475



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 135/288 (46%), Gaps = 5/288 (1%)

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           R     YN +   LC+    D A ++FE    D ++P+   +  L+   AE G++     
Sbjct: 100 RHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATA 159

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE-LKGKGYSSVPIYNILMGALL 423
           LL Q  +++      +      LV K +R+  A+ +F+E L+ +  +    +NIL+  L 
Sbjct: 160 LLLQSFEVE-GCCMVVNSLLNTLV-KLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLC 217

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PSV 482
            +G+ +KAL L G M G   E + ++++  IQ   +S ++ +A E    +   S   P V
Sbjct: 218 GVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDV 277

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             Y  +  G CK G++  A  L+ D L  +   PT   + + +    ++GE     E+  
Sbjct: 278 VTYTSMISGYCKAGKMREASSLLDDML-RLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRG 336

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +M   GC P+ V  +++I G C+ G + +  +++  +  R +   A T
Sbjct: 337 KMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFT 384



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 83/177 (46%), Gaps = 6/177 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE-RNLDACLRVWEEMKKDLVEADVMA 240
           G++++   + E+M      P+ F Y+ +I  L  E R L A   + +   KD++    M 
Sbjct: 361 GQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFM- 419

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G CK G+V   + +  EM++     D+  + +LI G   +G++ +A  +   +V
Sbjct: 420 YNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMV 479

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ---DDLAP-DFSTVNPLLVCC 353
             G   D    +S++  L +     +AY L ++  +   +++ P +  T N  L  C
Sbjct: 480 AIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIARKGQSNNVVPLETKTANATLAAC 536



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 4/202 (1%)

Query: 401 FEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
           F   K     S   YN+L  +L + G    A  +F  M+   +  N+      +    E 
Sbjct: 92  FSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEK 151

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
           G +  A     +  E+     V   N L   L K+  ++ AM L  + L   +   T+  
Sbjct: 152 GKLHFATALLLQSFEVEGCCMVV--NSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTK-T 208

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           + + I  +C  G+AEK +E+L  M+  GC P+ V  + +I G CK   L +A ++F +++
Sbjct: 209 FNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVK 268

Query: 581 ERKLLTEANTIVYDEILIEHMK 602
              + +  + + Y  ++  + K
Sbjct: 269 SGSVCS-PDVVTYTSMISGYCK 289


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 188/415 (45%), Gaps = 20/415 (4%)

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
           ++ +  +M  N    ++   + +I   +   +      V+  + K   E D +   TLI 
Sbjct: 88  VVSLHRQMEFNGIASNLVTLSILINCFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIK 147

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC  G + +      ++   G  +++  Y  LI GL   G+   A ++L+ +     R 
Sbjct: 148 GLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRL 207

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D+ +YN+II G+C+ K  + A+  +   V   + P   T N L+     MG++ +   LL
Sbjct: 208 DVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLL 267

Query: 367 AQM--EKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
            +M  E +  +V       F  LV    KE ++  A +VF  +  K    ++  YN LM 
Sbjct: 268 HKMILENINPTVYT-----FSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMN 322

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQ 478
               + EV KA  +F  M  + +  +  S+SI I   C ++  D  EA +   ++     
Sbjct: 323 GYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVD--EAMKLFEEMHCKQI 380

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P V  YN L  GLCK G I  A+ L+ + + +    P    Y   +  +C++   +K I
Sbjct: 381 FPDVVTYNSLIDGLCKSGRISYALKLIGE-MHDRGQPPNIITYNSLLDALCKNHHVDKAI 439

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
           E+L ++      P+    + +I+G+CK G L++A+KVF    E  L+   N  VY
Sbjct: 440 ELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVF----EDVLVNGYNIDVY 490



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 150/318 (47%), Gaps = 5/318 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+    LE+L ++   L + DV  Y  +I  +  ++ ++     + EM    +   V+ Y
Sbjct: 188 GQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTY 247

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI GLC  G++     L  +M    I      + +L++    EGKV +A ++   ++ 
Sbjct: 248 NTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMK 307

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              + ++  YNS++ G C V + +KA  +F    Q  +APD  + + ++    ++  +D 
Sbjct: 308 KDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDE 367

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNIL 418
             KL  +M   +  +  D+  +   + G  K  RI  AL +  E+  +G   ++  YN L
Sbjct: 368 AMKLFEEMHCKQ--IFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSL 425

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + AL +   V KA+ L  K++  N++ +  +++I I    +SG + +A +    ++    
Sbjct: 426 LDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGY 485

Query: 479 VPSVAAYNCLTKGLCKIG 496
              V  YN + KG CK G
Sbjct: 486 NIDVYTYNTMIKGFCKKG 503



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 152/343 (44%), Gaps = 10/343 (2%)

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L R+M+ NGI  +     +LI      G    +  +  +++  GY  D     ++I GL
Sbjct: 90  SLHRQMEFNGIASNLVTLSILINCFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGL 149

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME-KLKFSVA 377
           C      KA    +  +      +  +   L+    ++G+     ++L +++ KL   V 
Sbjct: 150 CLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKL---VR 206

Query: 378 ADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL 434
            D+  +   + G  K++ +  A D + E+  K    +V  YN L+  L  +G++K A+ L
Sbjct: 207 LDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGL 266

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
             KM   N+     +FSI +    + G + EA      +++    P++  YN L  G C 
Sbjct: 267 LHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCL 326

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
           + E++ A   + + +  +   P    Y++ I   C+    ++ +++  EM  +   P+ V
Sbjct: 327 VNEVNKAES-IFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVV 385

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             +++I G+CK G +  A K+   + +R      N I Y+ +L
Sbjct: 386 TYNSLIDGLCKSGRISYALKLIGEMHDRG--QPPNIITYNSLL 426



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 95/208 (45%), Gaps = 20/208 (9%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           +K  K N  +YN+L   YCL         ++   + ++  +I                PD
Sbjct: 307 KKDVKPNIVTYNSLMNGYCL-----VNEVNKAESIFNTMAQIG-------------VAPD 348

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V +Y+ MI      + +D  ++++EEM    +  DV+ Y +LI GLCK GR+    +L  
Sbjct: 349 VHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIG 408

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EM + G   +   Y  L++ L     V KA +LL  L D   +  +  YN +I GLC+  
Sbjct: 409 EMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSG 468

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           +   A K+FE  + +    D  T N ++
Sbjct: 469 RLKDAQKVFEDVLVNGYNIDVYTYNTMI 496



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 82/179 (45%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ E   +   M +   KP++  Y +++        ++    ++  M +  V  DV +
Sbjct: 292 EGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHS 351

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G CK   V    +LF EM    I  D   Y  LI+GL   G++  A  L+ ++ 
Sbjct: 352 YSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMH 411

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           D G   ++  YNS++  LC+    DKA +L       ++ P   T N L+    + GR+
Sbjct: 412 DRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRL 470



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/391 (20%), Positives = 153/391 (39%), Gaps = 72/391 (18%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P +  +  ++  L    +    + +  +M+ + + ++++    LI    + G       +
Sbjct: 67  PSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFSQLGHNSLSFSV 126

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F  + + G   D      LI+GL  +G + KA      ++  G++ +   Y ++I GLC+
Sbjct: 127 FSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCK 186

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           V Q   A ++                           R+D     L +++ + ++   D 
Sbjct: 187 VGQTKAALEMLR-------------------------RIDG---KLVRLDVVMYNTIIDG 218

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
                  V K++ +  A D + E+  K    +V  YN L+  L  +G++K A+ L  KM 
Sbjct: 219 -------VCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMI 271

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
             N+     +FSI +    + G + EA      +++    P++  YN L  G C + E++
Sbjct: 272 LENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVN 331

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
                                            +AE I    N M Q G  P+    S +
Sbjct: 332 ---------------------------------KAESI---FNTMAQIGVAPDVHSYSIM 355

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           ISG CK   ++EA K+F  +  +++  +  T
Sbjct: 356 ISGFCKIKMVDEAMKLFEEMHCKQIFPDVVT 386



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/305 (20%), Positives = 126/305 (41%), Gaps = 50/305 (16%)

Query: 341 PDFSTVNPLLV--CCAEMGRMDNFFKLLAQMEKLKFSVAADLEK------FFEF--LVG- 389
           P+F  +NP+ +  C        N   L +Q+  L  S    L +        +F  ++G 
Sbjct: 19  PNFQFLNPIFLIHCFTSYSSFSNSTTLYSQLHNLVSSFNHLLHQKNPTPSIIQFGKILGS 78

Query: 390 --KEERIMMALDVFEELKGKGYSS-VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
             K     + + +  +++  G +S +   +IL+    ++G    +  +F  +     E +
Sbjct: 79  LVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFSQLGHNSLSFSVFSNILKKGYEPD 138

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           +++ +  I+     GDI +A   H+K++ +    +  +Y  L  GLCK+G+  AA+ ++R
Sbjct: 139 AITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLR 198

Query: 507 -----------------------DCLGNVASG-----------PTEFKYALTILHVCRSG 532
                                  D L N A             PT   Y   I  +C  G
Sbjct: 199 RIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMG 258

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           + +  I +L++M  E   P     S ++   CK G ++EA+ VF  + ++ +  + N + 
Sbjct: 259 QLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDV--KPNIVT 316

Query: 593 YDEIL 597
           Y+ ++
Sbjct: 317 YNSLM 321



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 56/109 (51%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GRI+  L+++ +M      P++  Y +++  L    ++D  + +  ++K   ++  V  
Sbjct: 397 SGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCT 456

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
           Y  LI GLCK GR+    ++F ++  NG  ID   Y  +I+G   +G V
Sbjct: 457 YNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFV 505



 Score = 42.0 bits (97), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 16/110 (14%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           +G   N  +YN+L   L +N+                 + + +E+L K++ +  +P V  
Sbjct: 413 RGQPPNIITYNSLLDALCKNH----------------HVDKAIELLTKLKDHNIQPSVCT 456

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVV 255
           Y  +I  L     L    +V+E++  +    DV  Y T+I G CK G V+
Sbjct: 457 YNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFVI 506


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 198/425 (46%), Gaps = 18/425 (4%)

Query: 169 RAADQVPELMDSQGRIAEMLEILE---KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV 225
           R+ + V  ++  +G     LE  E     + N+  P+V ++  +I+ +     +D  + V
Sbjct: 136 RSFNSVLNVIIQEGLFHRALEFYECGVGGKTNI-SPNVLSFNLVIKAMCKLGLVDRAIEV 194

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285
           + EM     E DV  Y TL+ GLCK  R+     L  EM+  G       + VLI GL  
Sbjct: 195 FREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCK 254

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           +G + +   L+ ++   G   +   YN+II GLC   + DKA  L +  V     P+  T
Sbjct: 255 KGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVT 314

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKL-----KFSVAADLEKFFEFLVGKEERIMMALDV 400
              L+    + GR  +   LL+ +E+      +++ +  +   F     KEE+   A+ +
Sbjct: 315 YGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLF-----KEEKSEEAMGL 369

Query: 401 FEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           ++++  KG   ++ +Y+ L+  L   G++ +A  +  +M       N+ ++S  I+   +
Sbjct: 370 WKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFK 429

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           +G+  +A     ++ + + VP+   Y+ L  GLC+ G++  AMM+    LG     P   
Sbjct: 430 TGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGR-GLRPDVV 488

Query: 520 KYALTILHVCRSGEAEKIIEVLNEM--TQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
            Y+  I  +C +G  E  +++ NEM   +    P+ V  + ++  +CK  ++  A  +  
Sbjct: 489 AYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLN 548

Query: 578 NLRER 582
           ++ +R
Sbjct: 549 SMLDR 553



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 107/478 (22%), Positives = 195/478 (40%), Gaps = 57/478 (11%)

Query: 129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRI---- 184
           E++  +  + F  A +   YK   +++ +L    + +  F    QV + M  + R+    
Sbjct: 41  ESDAPIPDQIFKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEK 100

Query: 185 ---------------AEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRVWE- 227
                           + +E+  +M     C+  V ++ +++ V+  E      L  +E 
Sbjct: 101 NFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYEC 160

Query: 228 -EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
               K  +  +V+++  +I  +CK G V R  E+FREM       D   Y  L++GL  E
Sbjct: 161 GVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKE 220

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
            ++ +A  LL ++   G       +N +I GLC+     +  KL +        P+  T 
Sbjct: 221 DRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTY 280

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKG 406
           N ++      G++D    LL +M   K  V  D+                          
Sbjct: 281 NTIINGLCLKGKLDKAVSLLDRMVASK-CVPNDV-------------------------- 313

Query: 407 KGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
                   Y  L+  L++ G     ++L   +       N  ++S  I    +     EA
Sbjct: 314 -------TYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEA 366

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
                K++E    P++  Y+ L  GLC+ G++D A  ++ + + N    P  F Y+  I 
Sbjct: 367 MGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCE-MVNKGCTPNAFTYSSLIK 425

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
              ++G ++K I V  EM +  C PNE+  S +I G+C+ G L EA  ++T++  R L
Sbjct: 426 GFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGL 483



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 95/427 (22%), Positives = 174/427 (40%), Gaps = 72/427 (16%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           V + M   G +   +E+  +M    C+PDVF Y  ++  L  E  +D  + + +EM+ + 
Sbjct: 178 VIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEG 237

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI------------------------ 269
                + +  LI GLCK G +VR  +L   M   G                         
Sbjct: 238 CFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAV 297

Query: 270 -LIDRAI----------YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L+DR +          YG LI GLV +G+      LL  L + G+ A+   Y+++I GL
Sbjct: 298 SLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGL 357

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
            + ++ ++A  L++  V+    P+    + L+      G++D                  
Sbjct: 358 FKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDE----------------- 400

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
                             A ++  E+  KG + +   Y+ L+    + G  +KA+ ++ +
Sbjct: 401 ------------------AKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKE 442

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M   N   N + +S+ I    E G + EA      ++     P V AY+ +  GLC  G 
Sbjct: 443 MAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGS 502

Query: 498 IDAAMMLVRDCLGNVA-SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           ++  + L  + L   + S P    Y + +  +C+       I++LN M   GC P+ + C
Sbjct: 503 VEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITC 562

Query: 557 SAIISGM 563
           +  ++ +
Sbjct: 563 NIFLNAL 569


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 110/452 (24%), Positives = 200/452 (44%), Gaps = 14/452 (3%)

Query: 181 QGRIAEMLE-ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +G   ++LE +  +M     KPDV  +  +++ L     +   + + EEM    V  D  
Sbjct: 158 EGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDET 217

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            + TL+ G  + G +     +   M E G    +    VLI G    G+V  A   ++  
Sbjct: 218 TFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQE 277

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G+  D   YN+ + GLC+      A K+ +V VQ+   PD  T N ++ C  + G++
Sbjct: 278 IADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQL 337

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           +    +L QM  +      D+  F   +       R+  ALD+  ++  KG S  V  +N
Sbjct: 338 EEAKGILNQM--VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFN 395

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+ AL ++G+   AL LF +M+      + ++++  I      G + +A +   K +E 
Sbjct: 396 ILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLL-KDMES 454

Query: 477 SQVP-SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
           +  P S   YN +  GLCK   I+ A   V D +           +   I  +C+  + +
Sbjct: 455 TGCPRSTITYNTIIDGLCKKMRIEEAEE-VFDQMDLQGISRNAITFNTLIDGLCKDKKID 513

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
               ++N+M  EG  PN +  ++I++  CK G +++A  +   +       E + + Y  
Sbjct: 514 DAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGF--EVDVVTYGT 571

Query: 596 I---LIEHMKKKTADLVLSGLKFFGLESKLKA 624
           +   L +  + + A  VL G++  G+    KA
Sbjct: 572 LINGLCKAGRTQVALKVLRGMRIKGMRPTPKA 603



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 158/355 (44%), Gaps = 21/355 (5%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+G+  +  +YN +  CL +N                G++ E   IL +M    C PD+ 
Sbjct: 314 QEGHDPDVFTYNIVVNCLCKN----------------GQLEEAKGILNQMVDRGCLPDIT 357

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            +  +I  L     L+  L +  ++    V  DV  +  LI  LCK G       LF EM
Sbjct: 358 TFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM 417

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K +G   D   Y  LI+ L   GK+GKA DLLKD+  +G       YN+II GLC+  + 
Sbjct: 418 KNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           ++A ++F+      ++ +  T N L+    +  ++D+ F L+ QM  +   +  +   + 
Sbjct: 478 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQM--ISEGLQPNNITYN 535

Query: 385 EFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
             L    K+  I  A D+ E +   G+   V  Y  L+  L + G  + AL +   MR  
Sbjct: 536 SILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIK 595

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            +     +++  +Q      +I +A     ++ E+ + P    Y  + +GLC+ G
Sbjct: 596 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGG 650



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 169/389 (43%), Gaps = 6/389 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ + L  +++   +  +PD   Y   +  L    ++   L+V + M ++  + DV  Y
Sbjct: 265 GRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTY 324

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++  LCK G++     +  +M + G L D   +  LI  L    ++ +A DL + +  
Sbjct: 325 NIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTV 384

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  +N +I  LC+V     A +LFE        PD  T N L+     +G++  
Sbjct: 385 KGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGK 444

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
              LL  ME      +          + K+ RI  A +VF+++  +G S   I +N L+ 
Sbjct: 445 ALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLID 504

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L +  ++  A  L  +M    L+ N+++++  +  + + GDI +A +    +       
Sbjct: 505 GLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEV 564

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKII 538
            V  Y  L  GLCK G    A+ ++R   G    G  PT   Y   +  + R       +
Sbjct: 565 DVVTYGTLINGLCKAGRTQVALKVLR---GMRIKGMRPTPKAYNPVLQSLFRRNNIRDAL 621

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            +  EM + G PP+ +    +  G+C+ G
Sbjct: 622 SLFREMAEVGEPPDALTYKIVFRGLCRGG 650



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 178/400 (44%), Gaps = 51/400 (12%)

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           GI  D  +Y  L+  LV   K+     +  ++   G + D+  +N+++  LCR  Q   A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS------------ 375
             + E      +APD +T   L+    E G ++   ++ A+M ++  S            
Sbjct: 201 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 260

Query: 376 -------------VAADLEKFFE--------FLVG--KEERIMMALDVFEELKGKGYS-S 411
                        +  ++   FE        F+ G  + + +  AL V + +  +G+   
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 320

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDIL-EACE 468
           V  YNI++  L + G++++A  +  +M  RG   ++ + +  IA  C   +G+ L EA +
Sbjct: 321 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC---TGNRLEEALD 377

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
              ++      P V  +N L   LCK+G+   A+ L  + + N    P E  Y   I ++
Sbjct: 378 LARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE-MKNSGCTPDEVTYNTLIDNL 436

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C  G+  K +++L +M   GCP + +  + II G+CK   +EEA +VF  +  + +    
Sbjct: 437 CSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGI--SR 494

Query: 589 NTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
           N I ++ ++    K K  D        FGL +++ ++G +
Sbjct: 495 NAITFNTLIDGLCKDKKID------DAFGLINQMISEGLQ 528



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 135/311 (43%), Gaps = 44/311 (14%)

Query: 287 GKVGKACDLLKDLV----DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           G VG A DL+K LV      G++  LG+ +S +      + FD A  L            
Sbjct: 85  GAVG-ALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLI----------- 132

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
            + + PL    A+    ++   +L +  K+K      LE                  V+ 
Sbjct: 133 LNQLQPLFGIQADTVVYNHLLNVLVEGSKMKL-----LES-----------------VYS 170

Query: 403 ELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           E+  +G    V  +N LM AL    +V+ A+ +  +M    +  +  +F+  +Q  VE G
Sbjct: 171 EMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEG 230

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEF 519
            I  A     +++EM    +    N L  G CK+G ++ A+  ++     +A G  P + 
Sbjct: 231 SIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQ---EIADGFEPDQI 287

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            Y   +  +C++      ++V++ M QEG  P+    + +++ +CK+G LEEA+ +   +
Sbjct: 288 TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 347

Query: 580 RERKLLTEANT 590
            +R  L +  T
Sbjct: 348 VDRGCLPDITT 358



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 9/154 (5%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR    L++L  MR    +P   AY  +++ L    N+   L ++ EM +     D + Y
Sbjct: 580 GRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTY 639

Query: 242 VTLIMGLCKGGRVVR-GHELFREMKENGILIDRAIYGVLIEGLVGEGKVG---KACDLLK 297
             +  GLC+GG  ++   +   EM + G + + + + +L EGL+  G      +A +++ 
Sbjct: 640 KIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIM 699

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           + VD    +D+    S I G  ++++F  A   F
Sbjct: 700 EKVDL-RESDV----SAIRGYLKIRKFYDALATF 728


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 172/398 (43%), Gaps = 7/398 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD + YT +IR L     +   L + ++M     +  V+ Y  L+  +CK     +  E+
Sbjct: 174 PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEV 233

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             EM+  G   +   Y V+I G+  EG+V  A + L  L   G++ D   Y +++ GLC 
Sbjct: 234 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCA 293

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            K+++   +LF   ++ +  P+  T + L+      G ++   ++L QM     +    L
Sbjct: 294 AKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTL 353

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMR 439
                  + K+ R+  A      +   G S   I Y  ++  L      + A  L  +M 
Sbjct: 354 CNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 413

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
             N   N ++F+  I    + G I +A     ++ E     ++  YN L  G C  G +D
Sbjct: 414 RKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVD 473

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           +A+ L      ++   P    Y   +  +C +   +   E+L EM Q+ C PN V  + +
Sbjct: 474 SALEL----FYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVL 529

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +S  C+ G ++EA ++   + E       N I Y+ +L
Sbjct: 530 VSFFCQKGLMDEAIELVEQMMEHG--CTPNLITYNTLL 565



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 178/407 (43%), Gaps = 19/407 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E L +L+ M    C+P V  YT ++  +         + V +EM+      +++ 
Sbjct: 189 RGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVT 248

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G+C+ GRV    E    +   G   D   Y  +++GL    +     +L  +++
Sbjct: 249 YNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM 308

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +     +   ++ ++   CR    ++A ++ E       A + +  N ++    + GR+D
Sbjct: 309 EKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVD 368

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNI 417
           + F+ L  M    +  + D   +   L G  + ER   A ++ +E+  K      + +N 
Sbjct: 369 DAFQFLNNMG--SYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNT 426

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
            +  L + G +++A  L  +M     EVN ++++  +      G +  A E       M 
Sbjct: 427 FICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE---LFYSMP 483

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSG 532
             P+   Y  L  GLC    +DAA      ML +DC  NV +      + + +   C+ G
Sbjct: 484 CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVT------FNVLVSFFCQKG 537

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             ++ IE++ +M + GC PN +  + ++ G+ K    EEA ++   L
Sbjct: 538 LMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGL 584



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 177/400 (44%), Gaps = 14/400 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PDV+  T +IR L          RV    ++     DV AY TL+ G C+ G++     L
Sbjct: 107 PDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRL 166

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              M    +  D   Y  +I GL   G+VG+A  LL D++  G +  +  Y  ++  +C+
Sbjct: 167 IASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCK 223

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
              F +A ++ +        P+  T N ++      GR+D+  + L ++    F    D 
Sbjct: 224 STGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQ--PDT 281

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGK 437
             +   L G    +R     ++F E+  K      + +++L+      G V++A+ +  +
Sbjct: 282 VSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQ 341

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M G     N+   +I I    + G + +A +  N +      P   +Y  + KGLC+   
Sbjct: 342 MSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAER 401

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
            + A  L+++ +      P E  +   I  +C+ G  E+   ++ +M++ GC  N V  +
Sbjct: 402 WEDAKELLKE-MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYN 460

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           A+++G C  G ++ A ++F ++       + NTI Y  +L
Sbjct: 461 ALVNGFCVQGRVDSALELFYSMP-----CKPNTITYTTLL 495



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/486 (20%), Positives = 208/486 (42%), Gaps = 66/486 (13%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           + KG   N  +YN +   + R                +GR+ +  E L ++     +PD 
Sbjct: 238 RAKGCTPNIVTYNVIINGMCR----------------EGRVDDAREFLNRLSSYGFQPDT 281

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            +YT +++ L A +  +    ++ EM +     + + +  L+   C+GG V R  ++  +
Sbjct: 282 VSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQ 341

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M  +G   +  +  ++I  +  +G+V  A   L ++   G   D   Y +++ GLCR ++
Sbjct: 342 MSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAER 401

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           ++ A +L +  V+ +  P+  T N  +    + G ++    L+ QM +    V       
Sbjct: 402 WEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEV------- 454

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
                                      ++  YN L+      G V  AL LF  M     
Sbjct: 455 ---------------------------NIVTYNALVNGFCVQGRVDSALELFYSM---PC 484

Query: 444 EVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
           + N+++++  +   C+ E  D   A E   ++++    P+V  +N L    C+ G +D A
Sbjct: 485 KPNTITYTTLLTGLCNAERLD--AAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEA 542

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           + LV   + +    P    Y   +  + +   +E+ +E+L+ +   G  P+ V  S+II 
Sbjct: 543 IELVEQMMEH-GCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIG 601

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESK 621
            + +   +EEA K+F  +++  +  +A  ++Y++IL+   K+   D     + FF   + 
Sbjct: 602 VLSREDRVEEAIKMFHIVQDLGMRPKA--VIYNKILLALCKRCNTD---GAIDFF---AY 653

Query: 622 LKAKGC 627
           + + GC
Sbjct: 654 MVSNGC 659



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 59/118 (50%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E LE+L  +  N   PD+  Y+++I VL+ E  ++  ++++  ++   +    + Y  ++
Sbjct: 576 EALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKIL 635

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           + LCK        + F  M  NG + +   Y  LIEGL  E  + +  DLL++L   G
Sbjct: 636 LALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRG 693


>gi|125537408|gb|EAY83896.1| hypothetical protein OsI_39118 [Oryza sativa Indica Group]
          Length = 693

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 130/564 (23%), Positives = 238/564 (42%), Gaps = 67/564 (11%)

Query: 89  ARFITDAFRKNQFQ--WGPQVVTELSKLRRV-TPDLVAEVLKVENNPTL--ASKFFHWAG 143
           +R + D  R  + +  W P++  +L  L RV +P  V  VL+ +    +  A +FF WA 
Sbjct: 62  SRLVRDTCRLLELRESWSPKLEAQLRHLLRVLSPPQVRAVLRAQARGDVRRAFEFFRWAD 121

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           +Q  Y+H    +  L    SR    R+A +V  LM   G                   R+
Sbjct: 122 RQWRYRHA-PEFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRV 180

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            + LE  E+MRR   +PDV+ Y  +I+ L   R +   + +   M ++    D ++Y T+
Sbjct: 181 DKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTV 240

Query: 245 IMGLCKGGRVVRGHELFREMKEN-GILIDRAIYGVLIEGLVGEGKVGKACDLLKD----- 298
           +  LCK  RV     L + M+ + G+  D+  Y VLI GL   G   +A + L++     
Sbjct: 241 MSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKR 300

Query: 299 ------------------------------LVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
                                         ++  G + D+  Y++++ G CR+ + D+A 
Sbjct: 301 FRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQAR 360

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
           K+ +   ++D  P+  T   LL    ++G+    ++LL + E+  ++ +           
Sbjct: 361 KMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGF 420

Query: 389 GKEERIMMALDVFEELKGKGY--SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
            +E ++  + DV  ++  KG+  ++V I N+L+ AL + G+  +A     + +     +N
Sbjct: 421 RREGKLKESCDVVVQMLQKGFFPTTVEI-NLLIHALCKDGKPAEAKDFMEQCQSKGCTIN 479

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
            ++F+  I      GD+  A    + +   ++ P V  Y  +   L K G +  A  LV 
Sbjct: 480 VVNFTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVE 539

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
             L N    PT   Y   I   C  G  E ++ +L +M        +   + ++  +C  
Sbjct: 540 KML-NRGLLPTPVTYRTVIHRYCEKGNLEDLLNLLEKMLAR--QEMKSAYNQVVEKLCAF 596

Query: 567 GTLEEARKVFTNLRERKLLTEANT 590
           G L EA  +   +     + +A T
Sbjct: 597 GKLNEAYSLLYKILRTASVRDAQT 620


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 166/375 (44%), Gaps = 47/375 (12%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++  + + +++L++M    CKPDV  Y  ++  +  E  LD  ++    M     + +V+
Sbjct: 28  AESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVI 87

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            +  ++  +C  GR +   +L  EM   G       + +LI  L  +G +G+A D+L+ +
Sbjct: 88  THNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKM 147

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   +   YN ++ G C+ K+ D+A +  E+ V     PD  T N +L    + G++
Sbjct: 148 PTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKV 207

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNIL 418
           D   +LL Q                                   L  KG S V I YN +
Sbjct: 208 DAAVELLNQ-----------------------------------LSSKGCSPVLITYNTV 232

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L ++G+  +A+ L  +MRG  L+ + +++S  I      G + EA +  + +     
Sbjct: 233 IDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGV 292

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            P+   YN +  GLCK  + D A+     M+ + C       PTE  Y + I  +   G 
Sbjct: 293 KPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGC------KPTEVSYTILIEGIANEGL 346

Query: 534 AEKIIEVLNEMTQEG 548
           A++ +E+LNE+   G
Sbjct: 347 AKEALELLNELCSRG 361



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 124/292 (42%), Gaps = 8/292 (2%)

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYT 207
           + ++  SY +    ++ N + R+       M S GR  +  ++L +M R  C P V  + 
Sbjct: 73  FLNSMPSYGSQPNVITHNIILRS-------MCSTGRWMDAEKLLTEMVRKGCSPSVVTFN 125

Query: 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
            +I  L  +  L   + + E+M       + ++Y  L+ G CK  ++ R  +    M   
Sbjct: 126 ILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSR 185

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           G   D   Y  ++  L  +GKV  A +LL  L   G    L  YN++I GL +V + D+A
Sbjct: 186 GCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQA 245

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
            +L        L PD  T + L+   +  G+++   K    +E       A       F 
Sbjct: 246 VELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFG 305

Query: 388 VGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKM 438
           + K ++   A+D    +  KG     + Y IL+  +   G  K+AL L  ++
Sbjct: 306 LCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNEL 357



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 102/244 (41%), Gaps = 19/244 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
           +KG   +  ++N L   L R  L   A  + E M + G                   ++ 
Sbjct: 114 RKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMD 173

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
             ++ LE M    C PD+  Y  M+  L  +  +DA + +  ++        ++ Y T+I
Sbjct: 174 RAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVI 233

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GL K G+  +  EL  EM+  G+  D   Y  LI GL  EGKV +A     D+   G +
Sbjct: 234 DGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVK 293

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            +   YNSI+ GLC+ +Q D+A       +     P   +   L+   A  G      +L
Sbjct: 294 PNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALEL 353

Query: 366 LAQM 369
           L ++
Sbjct: 354 LNEL 357



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 160/372 (43%), Gaps = 24/372 (6%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE 176
           +T  ++ E    E+    A K     G  +G K +  +YN L   + +            
Sbjct: 17  ITYTILIEATCAESGVGQAMKLLDEMG-SRGCKPDVVTYNVLVNGMCK------------ 63

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE-RNLDACLRVWEEMKKDLVE 235
               +GR+ E ++ L  M     +P+V  +  ++R + +  R +DA  ++  EM +    
Sbjct: 64  ----EGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDA-EKLLTEMVRKGCS 118

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
             V+ +  LI  LC+ G + R  ++  +M  +G   +   Y  L+ G   E K+ +A   
Sbjct: 119 PSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQY 178

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
           L+ +V  G   D+  YN+++  LC+  + D A +L         +P   T N ++   ++
Sbjct: 179 LEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSK 238

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SV 412
           +G+ D   +LL +M      +  D+  +   + G  +E ++  A+  F +++G G   + 
Sbjct: 239 VGKTDQAVELLHEMRGK--GLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNA 296

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             YN +M  L +  +  +A+     M     +   +S++I I+     G   EA E  N+
Sbjct: 297 FTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNE 356

Query: 473 IIEMSQVPSVAA 484
           +     V   +A
Sbjct: 357 LCSRGVVKKSSA 368



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 117/297 (39%), Gaps = 49/297 (16%)

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D+  Y  +I   C      +A KL +        PD  T N L+    + GR+D   K L
Sbjct: 15  DVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFL 74

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
             M                  +    R M A  +  E+  KG S SV  +NIL+  L   
Sbjct: 75  NSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRK 134

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G + +A+                             DILE    H         P+  +Y
Sbjct: 135 GLLGRAI-----------------------------DILEKMPTHG------CTPNSLSY 159

Query: 486 NCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           N L  G CK  ++D A+     M+ R C  ++ +      Y   +  +C+ G+ +  +E+
Sbjct: 160 NPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVT------YNTMLTALCKDGKVDAAVEL 213

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           LN+++ +GC P  +  + +I G+ K G  ++A ++   +R + L  + + I Y  ++
Sbjct: 214 LNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGL--KPDVITYSSLI 268



 Score = 45.8 bits (107), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    Y + I   C      + +++L+EM   GC P+ V  + +++GMCK G L+EA K 
Sbjct: 14  PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKF 73

Query: 576 FTNLRERKLLTEANTIVYDEIL 597
             ++      ++ N I ++ IL
Sbjct: 74  LNSMPSYG--SQPNVITHNIIL 93


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 197/422 (46%), Gaps = 12/422 (2%)

Query: 169 RAADQVPELMDSQGRIAEMLEILE---KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV 225
           R+ + V  ++  +G     LE  E     + N+  P+V ++  +I+ +     +D  + V
Sbjct: 152 RSFNSVLNVIIQEGLFHRALEFYECGVGGKTNI-SPNVLSFNLVIKAMCKLGLVDRAIEV 210

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285
           + EM     E DV  Y TL+ GLCK  R+     L  EM+  G       + VLI GL  
Sbjct: 211 FREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCK 270

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           +G + +   L+ ++   G   +   YN+II GLC   + DKA  L +  V     P+  T
Sbjct: 271 KGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVT 330

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE 403
              L+    + GR  +   LL+ +E+      A+   +   + G  KEE+   A+ ++++
Sbjct: 331 YGTLINGLVKQGRSVDGVHLLSSLEERGHH--ANEYAYSTLISGLFKEEKSEEAMGLWKK 388

Query: 404 LKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
           +  KG   ++ +Y+ L+  L   G++ +A  +  +M       N+ ++S  I+   ++G+
Sbjct: 389 MVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGN 448

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
             +A     ++ + + VP+   Y+ L  GLC+ G++  AMM+    LG     P    Y+
Sbjct: 449 SQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGR-GLRPDVVAYS 507

Query: 523 LTILHVCRSGEAEKIIEVLNEM--TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
             I  +C +G  E  +++ NEM   +    P+ V  + ++  +CK  ++  A  +  ++ 
Sbjct: 508 SMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSML 567

Query: 581 ER 582
           +R
Sbjct: 568 DR 569



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 95/427 (22%), Positives = 174/427 (40%), Gaps = 72/427 (16%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           V + M   G +   +E+  +M    C+PDVF Y  ++  L  E  +D  + + +EM+ + 
Sbjct: 194 VIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEG 253

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI------------------------ 269
                + +  LI GLCK G +VR  +L   M   G                         
Sbjct: 254 CFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAV 313

Query: 270 -LIDRAI----------YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L+DR +          YG LI GLV +G+      LL  L + G+ A+   Y+++I GL
Sbjct: 314 SLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGL 373

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
            + ++ ++A  L++  V+    P+    + L+      G++D                  
Sbjct: 374 FKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDE----------------- 416

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
                             A ++  E+  KG + +   Y+ L+    + G  +KA+ ++ +
Sbjct: 417 ------------------AKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKE 458

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M   N   N + +S+ I    E G + EA      ++     P V AY+ +  GLC  G 
Sbjct: 459 MAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGS 518

Query: 498 IDAAMMLVRDCLGNVA-SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           ++  + L  + L   + S P    Y + +  +C+       I++LN M   GC P+ + C
Sbjct: 519 VEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITC 578

Query: 557 SAIISGM 563
           +  ++ +
Sbjct: 579 NIFLNAL 585



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 164/388 (42%), Gaps = 37/388 (9%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWE--EMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
           C+  V ++ +++ V+  E      L  +E     K  +  +V+++  +I  +CK G V R
Sbjct: 147 CRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDR 206

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
             E+FREM       D   Y  L++GL  E ++ +A  LL ++   G       +N +I 
Sbjct: 207 AIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLIN 266

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           GLC+     +  KL +        P+  T N ++      G++D    LL +M   K  V
Sbjct: 267 GLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASK-CV 325

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFG 436
             D+                                  Y  L+  L++ G     ++L  
Sbjct: 326 PNDV---------------------------------TYGTLINGLVKQGRSVDGVHLLS 352

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            +       N  ++S  I    +     EA     K++E    P++  Y+ L  GLC+ G
Sbjct: 353 SLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREG 412

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           ++D A  ++ + + N    P  F Y+  I    ++G ++K I V  EM +  C PNE+  
Sbjct: 413 KLDEAKEILCE-MVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICY 471

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKL 584
           S +I G+C+ G L EA  ++T++  R L
Sbjct: 472 SVLIHGLCEDGKLREAMMMWTHMLGRGL 499


>gi|15219409|ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79540
 gi|4835755|gb|AAD30222.1|AC007202_4 Contains similarity to gi|2827663 F18F4.190 membrane-associated
           salt-inducible-like protein from Arabidopsis thaliana
           BAC gb|AL021637 [Arabidopsis thaliana]
 gi|332198140|gb|AEE36261.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 780

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 132/549 (24%), Positives = 230/549 (41%), Gaps = 75/549 (13%)

Query: 100 QFQWGPQVVTELSKLRRVTP-----------DLVAEVLKVENNPTLASKFFHWAGKQKGY 148
           +F    +V++ L+K + + P           +++  V+K E N  L  +FF WA +++  
Sbjct: 30  EFNISGEVISILAKKKPIEPALEPLVPFLSKNIITSVIKDEVNRQLGFRFFIWASRRERL 89

Query: 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDS-------------------QGRIAEMLE 189
           +    S+  +   LS +N      Q  E + S                    G   + +E
Sbjct: 90  RSR-ESFGLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVE 148

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA-CLRVWEEMKKDLVEADVMAYVTLIMGL 248
              +M+   C+PDVF Y  ++RV+  E         V+ EM K     ++  +  L+ GL
Sbjct: 149 SFGRMKEFDCRPDVFTYNVILRVMMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGL 208

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
            K GR     ++F +M   GI  +R  Y +LI GL   G    A  L  ++  SG   D 
Sbjct: 209 YKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDS 268

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             +N+++ G C++ +  +A++L  +  +D         + L+       R    F+L A 
Sbjct: 269 VAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYAN 328

Query: 369 MEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
           M  LK ++  D+  +   + G  K  +I  AL +   +  KG S     YN ++ AL   
Sbjct: 329 M--LKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGR 386

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G +++   L  +M       ++ + +I I     +G + EA E   +I +    PSVA +
Sbjct: 387 GLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATF 446

Query: 486 NCLTKGLCKIGEIDAAMMLV------------------------------------RDC- 508
           N L  GLCK GE+  A +L+                                    RD  
Sbjct: 447 NALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLSHSGNRSFDTMVESGSILKAYRDLA 506

Query: 509 -LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
              +  S P    Y + I   CR+G+ +  +++LN +  +G  P+ V  + +I+G+ + G
Sbjct: 507 HFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVG 566

Query: 568 TLEEARKVF 576
             EEA K+F
Sbjct: 567 REEEAFKLF 575



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 113/512 (22%), Positives = 199/512 (38%), Gaps = 84/512 (16%)

Query: 152 FASYNALAYCLSRNNLFRAADQVPELMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTA 208
           FA YN +  C    NL+        LMD    +GR ++  ++ + M      P+   YT 
Sbjct: 183 FAVYNEMLKCNCSPNLY----TFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTI 238

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           +I  L    + D   +++ EM+      D +A+  L+ G CK GR+V   EL R  +++G
Sbjct: 239 LISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDG 298

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
            ++    Y  LI+GL    +  +A +L  +++    + D+ +Y  +I GL +  + + A 
Sbjct: 299 FVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDAL 358

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
           KL        ++PD    N ++      G ++    L  +M + +    A         +
Sbjct: 359 KLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSM 418

Query: 389 GKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM--------- 438
            +   +  A ++F E++  G S SV  +N L+  L + GE+K+A  L  KM         
Sbjct: 419 CRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGRPASLF 478

Query: 439 --------RGLNLEVNS----------------------LSFSIAIQCHVESGDILEACE 468
                   R  +  V S                      +S+++ I     +GDI  A +
Sbjct: 479 LRLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALK 538

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML--VRDCLGNVASGPTEFKYALT-- 524
             N +      P    YN L  GL ++G  + A  L   +D   +    P  ++  +T  
Sbjct: 539 LLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLFYAKD---DFRHSPAVYRSLMTWS 595

Query: 525 ------------------------------ILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
                                         I    + GE E+ +  L E+          
Sbjct: 596 CRKRKVLVAFNLWMKYLKKISCLDDETANEIEQCFKEGETERALRRLIELDTRKDELTLG 655

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
             +  + G+C+ G   EA  VF+ LRE+K+L 
Sbjct: 656 PYTIWLIGLCQSGRFHEALMVFSVLREKKILV 687



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 149/374 (39%), Gaps = 43/374 (11%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +   G+I + L++L  M      PD + Y A+I+ L     L+    +  EM +     D
Sbjct: 348 LSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPD 407

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL-------------- 283
              +  LI  +C+ G V    E+F E++++G     A +  LI+GL              
Sbjct: 408 ACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLH 467

Query: 284 -------------------------VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
                                    V  G + KA   L    D+G   D+  YN +I G 
Sbjct: 468 KMEVGRPASLFLRLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGF 527

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           CR    D A KL  V     L+PD  T N L+     +GR +  FKL    +  + S A 
Sbjct: 528 CRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLFYAKDDFRHSPA- 586

Query: 379 DLEKFFEFLVGKEERIMMALDVF-EELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGK 437
            + +       ++ ++++A +++ + LK          N +     E GE ++AL    +
Sbjct: 587 -VYRSLMTWSCRKRKVLVAFNLWMKYLKKISCLDDETANEIEQCFKE-GETERALRRLIE 644

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           +     E+    ++I +    +SG   EA    + + E   + +  +   L  GLCK  +
Sbjct: 645 LDTRKDELTLGPYTIWLIGLCQSGRFHEALMVFSVLREKKILVTPPSCVKLIHGLCKREQ 704

Query: 498 IDAAMMLVRDCLGN 511
           +DAA+ +    L N
Sbjct: 705 LDAAIEVFLYTLDN 718



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 145/325 (44%), Gaps = 19/325 (5%)

Query: 276 YGVLIEGLVGEGKVGKACDL----LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           +G++I+ L  +      CDL    L++L   G   D   +  +I    ++   +KA + F
Sbjct: 95  FGLVIDMLSED----NGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESF 150

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKLKFSVAADLEKFFEFLVG 389
               + D  PD  T N +L     M R + FF L   +  E LK + + +L  F   + G
Sbjct: 151 GRMKEFDCRPDVFTYNVILRV---MMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDG 207

Query: 390 --KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
             K+ R   A  +F+++ G+G S   + Y IL+  L + G    A  LF +M+      +
Sbjct: 208 LYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPD 267

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           S++ +  +    + G ++EA E      +   V  +  Y+ L  GL +      A  L  
Sbjct: 268 SVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYA 327

Query: 507 DCLG-NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
           + L  N+   P    Y + I  + ++G+ E  +++L+ M  +G  P+    +A+I  +C 
Sbjct: 328 NMLKKNIK--PDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCG 385

Query: 566 HGTLEEARKVFTNLRERKLLTEANT 590
            G LEE R +   + E +   +A T
Sbjct: 386 RGLLEEGRSLQLEMSETESFPDACT 410



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 139/325 (42%), Gaps = 7/325 (2%)

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           +   E+K  G+ +D   + VLI      G   KA +    + +   R D+  YN I+  +
Sbjct: 113 QTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVM 172

Query: 319 CRVKQFDK-AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
            R + F   A+ ++   ++ + +P+  T   L+    + GR  +  K+   M      ++
Sbjct: 173 MREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGR--GIS 230

Query: 378 ADLEKFFEFLVGKEERIMM--ALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYL 434
            +   +   + G  +R     A  +F E++  G Y     +N L+    ++G + +A  L
Sbjct: 231 PNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFEL 290

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
                     +    +S  I     +    +A E +  +++ +  P +  Y  L +GL K
Sbjct: 291 LRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSK 350

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
            G+I+ A+ L+   + +    P  + Y   I  +C  G  E+   +  EM++    P+  
Sbjct: 351 AGKIEDALKLLSS-MPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDAC 409

Query: 555 ICSAIISGMCKHGTLEEARKVFTNL 579
             + +I  MC++G + EA ++FT +
Sbjct: 410 THTILICSMCRNGLVREAEEIFTEI 434


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 167/371 (45%), Gaps = 47/371 (12%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + + +++L++MR    KPDV  Y  +I  +  E  LD  ++    M     + +V+ +  
Sbjct: 98  VGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNI 157

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           ++  +C  GR +   +L  +M   G       + +LI  L  +G +G+A D+L+ +   G
Sbjct: 158 ILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 217

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
              +   YN ++ G C+ K+ D+A +  ++ V     PD  T N LL    + G++D   
Sbjct: 218 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVD--- 274

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGAL 422
                                           +A+++  +L  KG S V I YN ++  L
Sbjct: 275 --------------------------------VAVEILNQLSSKGCSPVLITYNTVIDGL 302

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            ++G+ ++A+ L  +MR   L+ + +++S  +      G + EA +  + +  +   P+ 
Sbjct: 303 SKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNA 362

Query: 483 AAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             YN +  GLCK  + D A+     M+ + C       PTE  Y + I  +   G A++ 
Sbjct: 363 ITYNSIMLGLCKSRQTDRAIDFLAYMISKRC------KPTEATYTILIEGIAYEGLAKEA 416

Query: 538 IEVLNEMTQEG 548
           +++LNE+   G
Sbjct: 417 LDLLNELCSRG 427



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 149/341 (43%), Gaps = 39/341 (11%)

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           +   ++    E  VG+A  LL ++ + G + D+  YN +I G+C+  + D+A K      
Sbjct: 85  FSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMP 144

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM 395
                P+  T N +L      GR  +  KLL+ M +                        
Sbjct: 145 SYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLR------------------------ 180

Query: 396 MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
                      KG S SV  +NIL+  L   G + +A+ +  KM       NSLS++  +
Sbjct: 181 -----------KGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLL 229

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
               +   +  A E  + ++     P +  YN L   LCK G++D A+ ++   L +   
Sbjct: 230 HGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ-LSSKGC 288

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P    Y   I  + + G+ E+ I++L+EM ++G  P+ +  S+++SG+ + G ++EA K
Sbjct: 289 SPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIK 348

Query: 575 VFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKF 615
            F +L    L    N I Y+ I++   K +  D  +  L +
Sbjct: 349 FFHDL--EGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAY 387



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 124/297 (41%), Gaps = 10/297 (3%)

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYT 207
           + +N  SY      ++ N + R+       M S GR  +  ++L  M R  C P V  + 
Sbjct: 139 FLNNMPSYGCQPNVITHNIILRS-------MCSTGRWMDAEKLLSDMLRKGCSPSVVTFN 191

Query: 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
            +I  L  +  L   + + E+M       + ++Y  L+ G CK  ++ R  E    M   
Sbjct: 192 ILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 251

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           G   D   Y  L+  L  +GKV  A ++L  L   G    L  YN++I GL +V + ++A
Sbjct: 252 GCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERA 311

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
            KL +   +  L PD  T + L+   +  G++D   K    +E L     A         
Sbjct: 312 IKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLG 371

Query: 388 VGKEERIMMALDVFEELKGKGYSSV-PIYNILMGALLEIGEVKKALYLFGKM--RGL 441
           + K  +   A+D    +  K        Y IL+  +   G  K+AL L  ++  RGL
Sbjct: 372 LCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 428



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 154/350 (44%), Gaps = 28/350 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           + KG K +  +YN L   + +                +GR+ E ++ L  M    C+P+V
Sbjct: 109 RNKGSKPDVVTYNVLINGICK----------------EGRLDEAIKFLNNMPSYGCQPNV 152

Query: 204 FAYTAMIRVLAAE-RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
             +  ++R + +  R +DA  ++  +M +      V+ +  LI  LC+ G + R  ++  
Sbjct: 153 ITHNIILRSMCSTGRWMDA-EKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILE 211

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           +M  +G   +   Y  L+ G   E K+ +A + L  +V  G   D+  YN+++  LC+  
Sbjct: 212 KMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDG 271

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           + D A ++         +P   T N ++   +++G+ +   KLL +M +    +  D+  
Sbjct: 272 KVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRK--GLKPDIIT 329

Query: 383 FFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMR 439
           +   + G  +E ++  A+  F +L+G G     I YN +M  L +  +  +A+     M 
Sbjct: 330 YSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMI 389

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACE-----CHNKIIEMSQVPSVAA 484
               +    +++I I+     G   EA +     C   +++ S    VAA
Sbjct: 390 SKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQVAA 439



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 115/269 (42%), Gaps = 40/269 (14%)

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
           F+     KE  +  A+ + +E++ KG    V  YN+L+  + + G + +A+     M   
Sbjct: 87  FYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSY 146

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
             + N ++ +I ++    +G  ++A +  + ++     PSV  +N L   LC+ G +  A
Sbjct: 147 GCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRA 206

Query: 502 M-----MLVRDCLGN---------------------------VASG--PTEFKYALTILH 527
           +     M +  C  N                           V+ G  P    Y   +  
Sbjct: 207 IDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTA 266

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           +C+ G+ +  +E+LN+++ +GC P  +  + +I G+ K G  E A K+   +R + L  +
Sbjct: 267 LCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGL--K 324

Query: 588 ANTIVYDEILIEHMKKKTADLVLSGLKFF 616
            + I Y  ++    ++   D     +KFF
Sbjct: 325 PDIITYSSLVSGLSREGKVD---EAIKFF 350



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 1/99 (1%)

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           S++ ++   +  CK   +  AM L+ D + N  S P    Y + I  +C+ G  ++ I+ 
Sbjct: 81  SLSGFSFYVQTTCKESGVGQAMKLL-DEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKF 139

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           LN M   GC PN +  + I+  MC  G   +A K+ +++
Sbjct: 140 LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDM 178


>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Glycine max]
          Length = 664

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 112/501 (22%), Positives = 224/501 (44%), Gaps = 33/501 (6%)

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRA---------AD 172
           VA  L+ E N   A + F +      +KH   +Y+ +   L RN+   A          +
Sbjct: 43  VAHALRREPNVLYALQHFQYLTNTLAFKHTPLTYHVMIEKLGRNSELDALHYILHQMKIE 102

Query: 173 QVPELMDS----------QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN--LD 220
           ++P   DS           G     L++  +++   CKP V  Y  ++  L  E      
Sbjct: 103 RIPCSQDSFICVLNSYKNSGLGDRALKMFYRIKEFGCKPTVKIYNHLLDALLGESGNKFH 162

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280
               V+E M+ + +E +V  Y  L+  LCK G++    +L  EM + G + D   Y  ++
Sbjct: 163 MIGAVYENMRGEGMEPNVFTYNVLLKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVV 222

Query: 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
             +  +G+V +A ++ +     G    + + N++I GLCR  +  + + L +  V + + 
Sbjct: 223 AAMCEDGRVEEAREVARRF---GAEGVVSVCNALICGLCREGRVGEVFGLMDEMVGNGVD 279

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMAL 398
           P+  + + ++   +++G ++    +L +M  ++     ++  F   + G     R+   +
Sbjct: 280 PNVVSYSSVISWLSDVGEVELALAVLGKM--IRRGCRPNVHTFSSLMKGYFLGGRVGEGV 337

Query: 399 DVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM-RGLNLEVNSLSFSIAIQC 456
            ++  +  +G   +V +YN L+  L   G + +A+ + G+M +      N  ++S  +  
Sbjct: 338 GLWRVMVLEGVRPNVVVYNTLLNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTYSTLVHG 397

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
            V++GD+  A E  NK++     P+V  Y  +   LCK    D A  L+ D +      P
Sbjct: 398 FVKAGDLQGASEVWNKMVNCGVRPNVVVYTSMVDVLCKNSMFDQAYRLI-DNMATDGCPP 456

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           T   +   I  +C  G     + V+++M + GC P+    + ++ G+     L+EA ++ 
Sbjct: 457 TVVTFNTFIKGLCCGGRVLWAMRVVDQMQRYGCLPDTRTYNELLDGLFSVNELKEACELI 516

Query: 577 TNLRERKLLTEANTIVYDEIL 597
             L ERK+  E N + Y+ ++
Sbjct: 517 RELEERKV--ELNLVTYNTVM 535



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 171/381 (44%), Gaps = 51/381 (13%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E+  ++++M  N   P+V +Y+++I  L+    ++  L V  +M +     +V  
Sbjct: 260 EGRVGEVFGLMDEMVGNGVDPNVVSYSSVISWLSDVGEVELALAVLGKMIRRGCRPNVHT 319

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL---- 296
           + +L+ G   GGRV  G  L+R M   G+  +  +Y  L+ GL   G + +A D+     
Sbjct: 320 FSSLMKGYFLGGRVGEGVGLWRVMVLEGVRPNVVVYNTLLNGLCCSGNLAEAVDVCGRME 379

Query: 297 KD--------------------------------LVDSGYRADLGIYNSIIGGLCRVKQF 324
           KD                                +V+ G R ++ +Y S++  LC+   F
Sbjct: 380 KDCFCRPNVTTYSTLVHGFVKAGDLQGASEVWNKMVNCGVRPNVVVYTSMVDVLCKNSMF 439

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           D+AY+L +    D   P   T N  +  +CC   GR+    +++ QM+  ++    D   
Sbjct: 440 DQAYRLIDNMATDGCPPTVVTFNTFIKGLCCG--GRVLWAMRVVDQMQ--RYGCLPDTRT 495

Query: 383 FFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
           + E L G      +  A ++  EL+ +    ++  YN +M      G+ +  L + G+M 
Sbjct: 496 YNELLDGLFSVNELKEACELIRELEERKVELNLVTYNTVMYGFSSHGKEEWVLQVLGRML 555

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PSVAAYNCLTKGLCKIGEI 498
              ++ ++++ ++ I  + + G +  A +  ++I    ++ P + A+  L  G+C    I
Sbjct: 556 VNGVKPDAITVNVVIYAYSKLGKVRTAIQFLDRITAGKELCPDIIAHTSLLWGICNSLGI 615

Query: 499 DAAM-----MLVRDCLGNVAS 514
           + A+     ML +    N+A+
Sbjct: 616 EEAIVYLNKMLNKGIFPNIAT 636



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 135/659 (20%), Positives = 232/659 (35%), Gaps = 136/659 (20%)

Query: 18  HRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPK 77
           HRKPS + P V     + R     P+SAS  H+S   +  + +P+ L   +     ++  
Sbjct: 13  HRKPS-SLPLV----LATRPLNPPPSSASLLHESHVAHALRREPNVLYALQHFQYLTNTL 67

Query: 78  TFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRV--TPDLVAEVLKVENNPTL- 134
            F   +H       + +   +N        +    K+ R+  + D    VL    N  L 
Sbjct: 68  AF---KHTPLTYHVMIEKLGRNSELDALHYILHQMKIERIPCSQDSFICVLNSYKNSGLG 124

Query: 135 --ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
             A K F+   K+ G K     YN L   L              L +S  +   +  + E
Sbjct: 125 DRALKMFYRI-KEFGCKPTVKIYNHLLDAL--------------LGESGNKFHMIGAVYE 169

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT--------- 243
            MR    +P+VF Y  +++ L     LD   ++  EM K     D ++Y T         
Sbjct: 170 NMRGEGMEPNVFTYNVLLKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVVAAMCEDG 229

Query: 244 -----------------------LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280
                                  LI GLC+ GRV     L  EM  NG+  +   Y  +I
Sbjct: 230 RVEEAREVARRFGAEGVVSVCNALICGLCREGRVGEVFGLMDEMVGNGVDPNVVSYSSVI 289

Query: 281 EGL--VGE---------------------------------GKVGKACDLLKDLVDSGYR 305
             L  VGE                                 G+VG+   L + +V  G R
Sbjct: 290 SWLSDVGEVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGGRVGEGVGLWRVMVLEGVR 349

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLF-----------EVTVQDDLAPDF----------- 343
            ++ +YN+++ GLC      +A  +             VT    L   F           
Sbjct: 350 PNVVVYNTLLNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTYSTLVHGFVKAGDLQGASE 409

Query: 344 -------STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD-----LEKFFEFLVGK- 390
                    V P +V    M  +     +  Q  +L  ++A D     +  F  F+ G  
Sbjct: 410 VWNKMVNCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLC 469

Query: 391 -EERIMMALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
              R++ A+ V +++  + Y  +P    YN L+  L  + E+K+A  L  ++    +E+N
Sbjct: 470 CGGRVLWAMRVVDQM--QRYGCLPDTRTYNELLDGLFSVNELKEACELIRELEERKVELN 527

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
            ++++  +      G      +   +++     P     N +     K+G++  A+  + 
Sbjct: 528 LVTYNTVMYGFSSHGKEEWVLQVLGRMLVNGVKPDAITVNVVIYAYSKLGKVRTAIQFLD 587

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
                    P    +   +  +C S   E+ I  LN+M  +G  PN      ++ G  K
Sbjct: 588 RITAGKELCPDIIAHTSLLWGICNSLGIEEAIVYLNKMLNKGIFPNIATWDVLVRGFFK 646


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 194/421 (46%), Gaps = 14/421 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + EM  +L+ M RN  +PD   +  +I   A +  +D  + V+ +M++  +  +V+
Sbjct: 353 TKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVV 412

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I  LCK G V      F +M + G+  +  +Y  LI GL    K  KA +L+ ++
Sbjct: 413 CYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEM 472

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +D G   +   +NSII   C+  +  ++ KLF++ V+  + PD  T N L+  C   G+M
Sbjct: 473 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKM 532

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           D   KLLA M  +   V  D+  +   + G  +  R+  AL +F+E+   G S ++  YN
Sbjct: 533 DEATKLLASM--VSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYN 590

Query: 417 ILMGALLEIGEVKKA--LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           I++  L        A  LY+     G  LE+++ +  +   C     D  EA      + 
Sbjct: 591 IILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTD--EALRMFQNLC 648

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSG 532
                     +N +   L K G +D A  L      + A+G  P    Y+L   ++   G
Sbjct: 649 LTDLQLETRTFNIMIGALLKCGRMDEAKDLFA---AHSANGLVPDVRTYSLMAENLIEQG 705

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
             E++ ++   M + GC  +  + ++I+  + + G +  A      + E+    EA+T  
Sbjct: 706 SLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTAS 765

Query: 593 Y 593
           +
Sbjct: 766 F 766



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 111/480 (23%), Positives = 201/480 (41%), Gaps = 59/480 (12%)

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKM---RRNLCKPDVFAYTAMIRVLAAERN 218
            S NNL +        +  + R  E LE+L  M   R     PDV +Y  ++     E +
Sbjct: 164 FSYNNLLKG-------LCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGD 216

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
            D     + EM    +  DV+ Y ++I  LCK   + +  E+   M +NG++ D   Y  
Sbjct: 217 SDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNS 276

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           ++ G    G+  +A   LK +   G   ++  Y+S++  LC+  +  +A K+F+   +  
Sbjct: 277 ILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRG 336

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV---GKEERIM 395
           L PD +T   LL   A  G +     LL  M  ++  +  D    F  L+    K+E++ 
Sbjct: 337 LEPDIATYRTLLQGYATKGALVEMHALLDLM--VRNGIQPD-HHVFNILICAYAKQEKVD 393

Query: 396 MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM---------------- 438
            A+ VF +++  G + +V  Y  ++  L + G V  A+  F +M                
Sbjct: 394 QAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLI 453

Query: 439 ---------------------RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
                                RG+ L  N++ F+  I  H + G ++E+ +  + ++ + 
Sbjct: 454 HGLCTCDKWDKAEELILEMLDRGICL--NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 511

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P +  YN L  G C  G++D A  L+   + +V   P    Y   I   CR    +  
Sbjct: 512 VKPDIITYNTLIDGCCLAGKMDEATKLLASMV-SVGVKPDIVTYGTLINGYCRVSRMDDA 570

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           + +  EM   G  PN +  + I+ G+        A++++ ++ +     E +T  Y+ IL
Sbjct: 571 LALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELST--YNIIL 628



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 184/411 (44%), Gaps = 24/411 (5%)

Query: 183 RIAEMLEI-LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA---DV 238
           R ++ ++I L +M    C PDVF+Y  +++ L  E      L +   M  D       DV
Sbjct: 142 RTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDV 201

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           ++Y T++ G  K G   + +  + EM + GIL D   Y  +I  L     + KA ++L  
Sbjct: 202 VSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNT 261

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +V +G   D   YNSI+ G C   Q  +A    +    D + P+  T + L+    + GR
Sbjct: 262 MVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGR 321

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK-------EERIMMALDVFEELKGKGYSS 411
                K+   M K    +  D+  +   L G        E   ++ L V   ++   +  
Sbjct: 322 STEARKIFDSMTKR--GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHH-- 377

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
             ++NIL+ A  +  +V +A+ +F KMR   L  N + +   I    +SG + +A     
Sbjct: 378 --VFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFE 435

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           ++I+    P++  Y  L  GLC   + D A  L+ + L       T F  ++   H C+ 
Sbjct: 436 QMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSH-CKE 494

Query: 532 G---EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           G   E+EK+ ++   M + G  P+ +  + +I G C  G ++EA K+  ++
Sbjct: 495 GRVIESEKLFDL---MVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASM 542



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/434 (22%), Positives = 172/434 (39%), Gaps = 50/434 (11%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHE---------------------------------- 259
           V   V  Y  LI   C+ GR+  G                                    
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 260 --LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS---GYRADLGIYNSI 314
             + R M E G + D   Y  L++GL  E +  +A +LL  + D    G   D+  YN++
Sbjct: 148 DIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTV 207

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
           + G  +    DKAY  +   +   + PD  T + ++    +   MD   ++L  M  +K 
Sbjct: 208 LNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTM--VKN 265

Query: 375 SVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKA 431
            V  D   +   L G     +   A+   ++++  G   +V  Y+ LM  L + G   +A
Sbjct: 266 GVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEA 325

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
             +F  M    LE +  ++   +Q +   G ++E     + ++     P    +N L   
Sbjct: 326 RKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICA 385

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
             K  ++D A MLV   +      P    Y   I  +C+SG  +  +    +M  EG  P
Sbjct: 386 YAKQEKVDQA-MLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTP 444

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLS 611
           N ++ +++I G+C     ++A ++   + +R +    NTI ++ I+  H K+     V+ 
Sbjct: 445 NIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICL--NTIFFNSIIDSHCKEGR---VIE 499

Query: 612 GLKFFGLESKLKAK 625
             K F L  ++  K
Sbjct: 500 SEKLFDLMVRIGVK 513



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 76/168 (45%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R A   E+   + ++  + ++  Y  ++  L      D  LR+++ +    ++ +   + 
Sbjct: 601 RTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFN 660

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            +I  L K GR+    +LF     NG++ D   Y ++ E L+ +G + +  DL   + ++
Sbjct: 661 IMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEEN 720

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           G  AD  + NSI+  L +     +A     +  +   + + ST + LL
Sbjct: 721 GCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLL 768


>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 671

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 181/398 (45%), Gaps = 12/398 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+A+ L ++  M      PD + Y  ++  L   R  +    +  EM ++    + + +
Sbjct: 194 GRLADALALIASMP---VAPDTYTYNTVLMGLCGARQWEDAEALMAEMVRNHCPPNEVTF 250

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T I   C+ G + R  +L   M + G   D  IY  L+ G   +G+V  A +LL  ++ 
Sbjct: 251 ATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRVDDAIELLNGML- 309

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              + +   YN+ + GLC  ++++   +L    V+ D  P+ +T + L  C  + G +D 
Sbjct: 310 --CKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDC 367

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
             ++L QM K      A +     +   ++ R+  AL +   +       V  +N  +  
Sbjct: 368 AMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSMPCS--PDVISFNAALKG 425

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L        A  L  +M   +  +  ++F+I I    ++G +  A E   ++ +    P 
Sbjct: 426 LCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPD 485

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           +  Y+ L  GL + G +++A+ L +    ++   P  F Y   +  +CR+   E   E++
Sbjct: 486 IVTYSSLINGLSEQGLVESAIELFQ----SMPCKPDIFGYNAVLKGLCRAARWEDAGELI 541

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           + M ++ CPPNE+  + +I+ +C+ G ++ A +VF  +
Sbjct: 542 SNMARKDCPPNEITFNILINSLCQKGLVDRAIEVFEQM 579



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 175/377 (46%), Gaps = 18/377 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA-AERNLDACLRVWEEMKKDLVEADVM 239
           QGR+ + +E+L  M   LCKP+   Y A ++ L  A+R  D    + E ++KD +  +  
Sbjct: 295 QGRVDDAIELLNGM---LCKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEA- 350

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            +  L   LC+ G V    E+  +M + G   D  IY  LI     +G+V  A  LL  +
Sbjct: 351 TFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSM 410

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
             S    D+  +N+ + GLCR +++D A +L    +++D      T N L+    + GR+
Sbjct: 411 PCS---PDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGRV 467

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYSSVPIYNI 417
           +N  ++  QM K  +    D+  +   + G  E+ ++  A+++F+ +  K    +  YN 
Sbjct: 468 NNAIEVFEQMPK--YGCTPDIVTYSSLINGLSEQGLVESAIELFQSMPCK--PDIFGYNA 523

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++  L      + A  L   M   +   N ++F+I I    + G +  A E   ++ +  
Sbjct: 524 VLKGLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKGLVDRAIEVFEQMPKYG 583

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P +  YN L  G  + G +D A    R  L  ++  P    Y   +  +CR+   ++ 
Sbjct: 584 STPDIFTYNALINGFSEQGRLDDA----RRLLSTMSCKPDAVSYNSALKGLCRAERWKEA 639

Query: 538 IEVLNEMTQEGCPPNEV 554
            EV+ EM +  CPPNEV
Sbjct: 640 EEVVAEMLRMKCPPNEV 656



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 149/335 (44%), Gaps = 37/335 (11%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELM-------------------DSQGRIAEMLEIL 191
           N A+++ L  CL +N L   A +V E M                     QGR+ + L++L
Sbjct: 348 NEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLL 407

Query: 192 EKMRRNLCKPDVFAYTAMIRVLA-AERNLDACLRVWEEMKKD--LVEADVMAYVTLIMGL 248
             M    C PDV ++ A ++ L  AER  DA   + + +++D  L+E   M +  LI  L
Sbjct: 408 NSMP---CSPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIE---MTFNILIDSL 461

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C+ GRV    E+F +M + G   D   Y  LI GL  +G V  A +L + +     + D+
Sbjct: 462 CQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELFQSM---PCKPDI 518

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             YN+++ GLCR  +++ A +L     + D  P+  T N L+    + G +D   ++  Q
Sbjct: 519 FGYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKGLVDRAIEVFEQ 578

Query: 369 MEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGYSSVPIYNILMGALLEIG 426
           M   K+    D+  +   + G  E  R+  A  +   +  K       YN  +  L    
Sbjct: 579 MP--KYGSTPDIFTYNALINGFSEQGRLDDARRLLSTMSCK--PDAVSYNSALKGLCRAE 634

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
             K+A  +  +M  +    N ++F  A +  V +G
Sbjct: 635 RWKEAEEVVAEMLRMKCPPNEVTFKYANRLFVPNG 669



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 173/416 (41%), Gaps = 54/416 (12%)

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V A   +I+ L A+R L    RV + +K     AD +++ TL+ G C+ GR+    E   
Sbjct: 112 VVACNILIKKLCAQRRLADAERVLDALKA-AGAADPVSHNTLVAGYCRDGRLADA-ERLL 169

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
                    +   Y  LI G    G++  A  L+  +  +    D   YN+++ GLC  +
Sbjct: 170 AAAGLSGAANVVTYTTLINGYCRSGRLADALALIASMPVA---PDTYTYNTVLMGLCGAR 226

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL---------- 372
           Q++ A  L    V++   P+  T    +    + G +D   +LL +M +           
Sbjct: 227 QWEDAEALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYS 286

Query: 373 ----KFSVAADLEKFFEFLVG---KEERI-----MMALDVFEELKGKGYSSVPI------ 414
                FS    ++   E L G   K   I     +  L + +  +  G   V +      
Sbjct: 287 TLVNGFSEQGRVDDAIELLNGMLCKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCL 346

Query: 415 -----YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
                +++L   L + G V  A+ +  +M       +++ ++  I    E G + +A + 
Sbjct: 347 PNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKL 406

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVASGP-TEFKYAL 523
            N    M   P V ++N   KGLC+    D A      ML  DC       P  E  + +
Sbjct: 407 LNS---MPCSPDVISFNAALKGLCRAERWDDAEELIVQMLREDC-------PLIEMTFNI 456

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            I  +C++G     IEV  +M + GC P+ V  S++I+G+ + G +E A ++F ++
Sbjct: 457 LIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELFQSM 512



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 85/182 (46%), Gaps = 7/182 (3%)

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YN ++  L    + + A  L  +M   +   N ++F+  I+   ++G +  A +  +++ 
Sbjct: 215 YNTVLMGLCGARQWEDAEALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMP 274

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           +    P V  Y+ L  G  + G +D A+ L    L  +   P    Y   +  +C +   
Sbjct: 275 QYGCTPDVVIYSTLVNGFSEQGRVDDAIEL----LNGMLCKPNTICYNAALKGLCIAQRW 330

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTI 591
           E + +++ EM ++ C PNE   S + S +C++G ++ A +V   + +     +A   NT+
Sbjct: 331 EDVGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTL 390

Query: 592 VY 593
           +Y
Sbjct: 391 IY 392


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 185/405 (45%), Gaps = 26/405 (6%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L + ++M  N  + D F +  +I   +          ++ ++ K       + + TLI G
Sbjct: 81  LSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKG 140

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC  G + +      ++   G  +D+  YG LI GL   G++  A  LLK +     + +
Sbjct: 141 LCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPN 200

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
             +YN II  +C+ K  + A+ L+   V   + PD  T N L+   + + +++    L  
Sbjct: 201 AVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFN 260

Query: 368 QMEK-------LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
           +M+K         F++  D   F +     + ++++A+ + +++K      V  YN LM 
Sbjct: 261 KMKKENINPNVYTFNILVD--GFCKEGKVNDAKVVLAIMMKDDIK----PDVVTYNSLMD 314

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHV----ESGDILEACECHNKII 474
               I +V KA  +F  M    +  N   ++  +   C +    E+ ++ E   C  KII
Sbjct: 315 GYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCR-KII 373

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                P+V  Y+ L  GLCK+G I  A+ LV D + +    P    Y+  +  +C++   
Sbjct: 374 -----PNVVTYSSLIDGLCKLGRIFYALKLV-DEMHDRGQPPNIVTYSSILDALCKNHHV 427

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           +K I +L  +  +G  P+    + +I G+C+ G LE+A+ VF +L
Sbjct: 428 DKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDL 472



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 105/490 (21%), Positives = 221/490 (45%), Gaps = 26/490 (5%)

Query: 121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS 180
           +++ ++K +++ T  S   H   +  G + +F ++N L  C S+                
Sbjct: 67  ILSSLVKAKHHSTALS--LHQQMELNGIESDFFTFNILINCFSQ---------------- 108

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G  +    I  K+ +    P    +  +I+ L  + ++   L   +++       D ++
Sbjct: 109 LGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVS 168

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI GLCK GR+    +L + +    +  +  +Y ++I+ +     V  A DL   +V
Sbjct: 169 YGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMV 228

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 D+  YN++I G   V + + A  LF    ++++ P+  T N L+    + G+++
Sbjct: 229 AKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVN 288

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNI 417
           +   +LA M  +K  +  D+  +   + G     ++  A D+F+ +   G  ++V IY  
Sbjct: 289 DAKVVLAIM--MKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTT 346

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++    +I  V +A+ LF +MR   +  N +++S  I    + G I  A +  +++ +  
Sbjct: 347 MVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRG 406

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
           Q P++  Y+ +   LCK   +D A+ L+ + L +    P  + Y + I  +C+SG  E  
Sbjct: 407 QPPNIVTYSSILDALCKNHHVDKAIALLTN-LKDQGIRPDMYTYTILIKGLCQSGRLEDA 465

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             V  ++  +G   +    + +I G C  G  ++A  + + + +   +  A T  Y+ ++
Sbjct: 466 QNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKT--YELVI 523

Query: 598 IEHMKKKTAD 607
           +   +K   D
Sbjct: 524 LSLFEKDEND 533



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/432 (23%), Positives = 179/432 (41%), Gaps = 60/432 (13%)

Query: 139 FHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMR-RN 197
           FH     +G+  +  SY  L   L +     AA Q+ + +D  G++ +   ++  M   N
Sbjct: 153 FHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVD--GKLVQPNAVMYNMIIDN 210

Query: 198 LCK--------------------PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +CK                    PDVF Y A+I   +A   L+  + ++ +MKK+ +  +
Sbjct: 211 MCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPN 270

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V  +  L+ G CK G+V     +   M ++ I  D   Y  L++G     KV KA D+  
Sbjct: 271 VYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFD 330

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            +   G  A++ IY +++ G C++K  D+A  LFE      + P+  T + L+    ++G
Sbjct: 331 SMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLG 390

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYN 416
                                              RI  AL + +E+  +G   ++  Y+
Sbjct: 391 -----------------------------------RIFYALKLVDEMHDRGQPPNIVTYS 415

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++ AL +   V KA+ L   ++   +  +  +++I I+   +SG + +A      ++  
Sbjct: 416 SILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVK 475

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
                V AY  + +G C  G  D A+ L+     N    P    Y L IL +    E + 
Sbjct: 476 GYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDN-GCIPNAKTYELVILSLFEKDENDT 534

Query: 537 IIEVLNEMTQEG 548
             ++L EM   G
Sbjct: 535 AEKLLREMIVRG 546



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/390 (20%), Positives = 181/390 (46%), Gaps = 16/390 (4%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P  F +  ++  L   ++    L + ++M+ + +E+D   +  LI    + G       +
Sbjct: 59  PPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSI 118

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F ++ + G       +  LI+GL  +G + +A      +V  G+  D   Y ++I GLC+
Sbjct: 119 FAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCK 178

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           V +   A +L +      + P+    N ++    +   +++ F L +QM   +  +  D+
Sbjct: 179 VGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKR--ICPDV 236

Query: 381 EKFFEFLVGKE--ERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             +   + G     ++  A+D+F ++K +  + +V  +NIL+    + G+V  A  +   
Sbjct: 237 FTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAI 296

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M   +++ + ++++  +  +     + +A +  + +     + +V  Y  +  G CKI  
Sbjct: 297 MMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKM 356

Query: 498 IDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           +D A+     M  R  + NV +      Y+  I  +C+ G     +++++EM   G PPN
Sbjct: 357 VDEAINLFEEMRCRKIIPNVVT------YSSLIDGLCKLGRIFYALKLVDEMHDRGQPPN 410

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRER 582
            V  S+I+  +CK+  +++A  + TNL+++
Sbjct: 411 IVTYSSILDALCKNHHVDKAIALLTNLKDQ 440


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/476 (22%), Positives = 209/476 (43%), Gaps = 28/476 (5%)

Query: 138 FFHWAGKQKGYKHNFASYNALAYCLSRNN-------LFRAADQVPELMD---------SQ 181
           F+HWA  + G+ H   + N+L   L R          F+++   P +           ++
Sbjct: 82  FYHWAATRPGFSHTLFTRNSLLLALVRGGHLSDALGFFQSSISEPNVSSFNILLRGFAAR 141

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
                +  +L +M+      +   +  ++  L A R+LD  +  +  +  +  E  +  Y
Sbjct: 142 DDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVSYFNSVSPNKCEPTLFTY 201

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLCK  +V R  ++F EM   G   D   Y  LI+GL   G+V +A  L+  +V 
Sbjct: 202 TVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVA 261

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G       Y SI+ GLC+  +  +A K  +   +  L P   T + ++     MG+++ 
Sbjct: 262 RGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEK 321

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFL-----VGKEERIMMALDVFEELKGKGYS-SVPIY 415
            F ++ +M       A D   +  F+     +G+ E    A  VFE +  KG    +  Y
Sbjct: 322 AFAVMEEMADR--DCAPDTISYTMFIEALYSIGRREE---AEKVFETMVEKGCKPDMHTY 376

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
            I++    + G +  A ++   M    ++ N   +++ +   V+S  + EA E + +I++
Sbjct: 377 GIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILK 436

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS-GPTEFKYALTILHVCRSGEA 534
              +PS   YN +   LCK+ ++D A+ L+R+         P+   Y++ I  + + G  
Sbjct: 437 DGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGME 496

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           E+  ++L EM   G  P+    +++I  +   G +  A ++   + +  +  + +T
Sbjct: 497 ERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHT 552



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 180/385 (46%), Gaps = 9/385 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++    ++ E+M R   KPD+ AY+++I  L+    +D   ++ + M         +AY 
Sbjct: 213 KVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYT 272

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +++ GLCK GR+    +  +EM+   +      Y  ++ G +G GKV KA  +++++ D 
Sbjct: 273 SIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADR 332

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
               D   Y   I  L  + + ++A K+FE  V+    PD  T   ++    + G M   
Sbjct: 333 DCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAA 392

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILM 419
             +L  M+K   +V  +   +   + G  K  R+  AL++++ +   G   S   YN ++
Sbjct: 393 THVLRLMDKA--AVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVI 450

Query: 420 GALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
            AL ++ ++ +AL L  +M  R   LE + +++S+ I    + G    A +   ++I+  
Sbjct: 451 NALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNG 510

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
            +P    Y  L + L   G++  AM L+ + L      P +  Y   +  +CRS + +  
Sbjct: 511 VIPDCFTYTSLIQTLAGAGKVSRAMELLEEML-KAGIFPDDHTYGTLVQILCRS-DVDAA 568

Query: 538 IEVLNEMTQEGCPPNEVICSAIISG 562
            ++L EM + G  PNE    A+  G
Sbjct: 569 WDLLQEMMRNGHTPNEFTFKAVEKG 593



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 174/396 (43%), Gaps = 53/396 (13%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
           +KGYK +  +Y++L   LS+      A ++ +LM ++G                   RI 
Sbjct: 226 RKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQ 285

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E ++ +++MRR   +P V  Y+ ++        ++    V EEM       D ++Y   I
Sbjct: 286 EAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFI 345

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
             L   GR     ++F  M E G   D   YG++I+    EG +  A  +L+ +  +  +
Sbjct: 346 EALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVK 405

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            +  IY  I+ G  +  + ++A +L++  ++D + P   T N ++    ++ +MD   +L
Sbjct: 406 PNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALEL 465

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEI 425
           L +M++ K                            EEL+     S+  Y++++  L ++
Sbjct: 466 LREMQRRK----------------------------EELE----PSIVTYSMIIHGLGKV 493

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G  ++A  L  +M    +  +  +++  IQ    +G +  A E   ++++    P    Y
Sbjct: 494 GMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTY 553

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
             L + LC+  ++DAA  L+++ + N    P EF +
Sbjct: 554 GTLVQILCR-SDVDAAWDLLQEMMRN-GHTPNEFTF 587


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 178/370 (48%), Gaps = 8/370 (2%)

Query: 228 EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGE 286
           E+ + +   + + Y T+I G C  GRV    ++ REM+E  GI  ++  YG +I G    
Sbjct: 62  ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 121

Query: 287 GKVGKACDLLKDLVDSG-YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           G+V +A  +  +++  G  + +  +YN++IGG C   + D A    +  V+  +A   +T
Sbjct: 122 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 181

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE 403
            N L+      GR    ++L+ +M      +A D+  +   + G  KE  +  AL++FE 
Sbjct: 182 YNLLVHALFMDGRGTEAYELVEEMGGK--GLAPDVFTYNILINGHCKEGNVKKALEIFEN 239

Query: 404 LKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
           +  +G  ++V  Y  L+ AL + G+V++   LF +     +  + + ++  I  H  SG+
Sbjct: 240 MSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGN 299

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
           I  A E   ++ +    P    YN L +GLC +G +D A  L+ D +      P    Y 
Sbjct: 300 IDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLI-DEMTKRGIQPDLVTYN 358

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             I      G+ +  + + NEM  +G  P  +  +A+I G+CK+G  ++A  +   + E 
Sbjct: 359 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 418

Query: 583 KLLTEANTIV 592
            +  + +T +
Sbjct: 419 GITPDDSTYI 428



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 150/331 (45%), Gaps = 35/331 (10%)

Query: 182 GRIAEMLEILEKM-RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           GR+ E +++ ++M  +   KP+   Y A+I     +  LD  L   + M +  V   V  
Sbjct: 122 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 181

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+  L   GR    +EL  EM   G+  D   Y +LI G   EG V KA ++ +++ 
Sbjct: 182 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 241

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G RA +  Y S+I  L +  Q  +  KLF+  V+  + PD    N L+   +  G +D
Sbjct: 242 RRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNID 301

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
             F+++ +MEK +  +A D                   DV              YN LM 
Sbjct: 302 RAFEIMGEMEKKR--IAPD-------------------DV-------------TYNTLMR 327

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L  +G V +A  L  +M    ++ + ++++  I  +   GD+ +A    N+++     P
Sbjct: 328 GLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 387

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
           ++  YN L +GLCK G+ D A  +V++ + N
Sbjct: 388 TLLTYNALIQGLCKNGQGDDAENMVKEMVEN 418



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 16/206 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G +    +Y +L Y LS+                +G++ E  ++ ++  R   +PD+ 
Sbjct: 242 RRGVRATVVTYTSLIYALSK----------------KGQVQETDKLFDEAVRRGIRPDLV 285

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y A+I   +   N+D    +  EM+K  +  D + Y TL+ GLC  GRV    +L  EM
Sbjct: 286 LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM 345

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            + GI  D   Y  LI G   +G V  A  +  ++++ G+   L  YN++I GLC+  Q 
Sbjct: 346 TKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQG 405

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLL 350
           D A  + +  V++ + PD ST   L+
Sbjct: 406 DDAENMVKEMVENGITPDDSTYISLI 431



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 152/352 (43%), Gaps = 48/352 (13%)

Query: 248 LCKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           LC  G+  R  EL R+M + N +      Y  +I G    G+V  A D+++++ + G  A
Sbjct: 51  LCSAGKPARALELLRQMPRPNAV-----TYNTVIAGFCSRGRVQAALDIMREMRERGGIA 105

Query: 307 -DLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
            +   Y ++I G C+V + D+A K+F E+  + ++ P+    N L+    + G++D    
Sbjct: 106 PNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALL 165

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
              +M +   ++           +  + R   A ++ EE+ GKG +  V  YNIL+    
Sbjct: 166 YRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHC 225

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G VKKAL +F  M    +    ++++  I    + G + E  +  ++ +     P + 
Sbjct: 226 KEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLV 285

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            YN L       G ID A                                     E++ E
Sbjct: 286 LYNALINSHSTSGNIDRA------------------------------------FEIMGE 309

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIV 592
           M ++   P++V  + ++ G+C  G ++EARK+   + +R +   L   NT++
Sbjct: 310 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLI 361



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 105/231 (45%), Gaps = 16/231 (6%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G     A+YN L + L               MD  GR  E  E++E+M      PDVF
Sbjct: 172 ERGVAMTVATYNLLVHAL--------------FMD--GRGTEAYELVEEMGGKGLAPDVF 215

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  +I     E N+   L ++E M +  V A V+ Y +LI  L K G+V    +LF E 
Sbjct: 216 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEA 275

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              GI  D  +Y  LI      G + +A +++ ++       D   YN+++ GLC + + 
Sbjct: 276 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 335

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
           D+A KL +   +  + PD  T N L+   +  G + +  ++  +M    F+
Sbjct: 336 DEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFN 386



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 115/261 (44%), Gaps = 5/261 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG++   L   ++M        V  Y  ++  L  +        + EEM    +  DV  
Sbjct: 157 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 216

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK G V +  E+F  M   G+      Y  LI  L  +G+V +   L  + V
Sbjct: 217 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAV 276

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G R DL +YN++I         D+A+++     +  +APD  T N L+     +GR+D
Sbjct: 277 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 336

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYS-SVPIYNI 417
              KL+ +M K    +  DL  +   + G   +  +  AL +  E+  KG++ ++  YN 
Sbjct: 337 EARKLIDEMTKR--GIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNA 394

Query: 418 LMGALLEIGEVKKALYLFGKM 438
           L+  L + G+   A  +  +M
Sbjct: 395 LIQGLCKNGQGDDAENMVKEM 415



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 5/191 (2%)

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLN-LEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           YN ++      G V+ AL +  +MR    +  N  ++   I    + G + EA +  +++
Sbjct: 75  YNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEM 134

Query: 474 IEMSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           +   +V P    YN L  G C  G++D A+ L RD +       T   Y L +  +   G
Sbjct: 135 LTKGEVKPEAVMYNALIGGYCDQGKLDTAL-LYRDRMVERGVAMTVATYNLLVHALFMDG 193

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
              +  E++ EM  +G  P+    + +I+G CK G +++A ++F N+  R +   A  + 
Sbjct: 194 RGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGV--RATVVT 251

Query: 593 YDEILIEHMKK 603
           Y  ++    KK
Sbjct: 252 YTSLIYALSKK 262



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 5/163 (3%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           S+PI    +  LL       A  LF  M  L L + + +F+I ++    +G    A E  
Sbjct: 5   SLPISTASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALE-- 62

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
             ++     P+   YN +  G C  G + AA+ ++R+        P ++ Y   I   C+
Sbjct: 63  --LLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCK 120

Query: 531 SGEAEKIIEVLNEMTQEG-CPPNEVICSAIISGMCKHGTLEEA 572
            G  ++ ++V +EM  +G   P  V+ +A+I G C  G L+ A
Sbjct: 121 VGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTA 163



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 101/219 (46%), Gaps = 8/219 (3%)

Query: 393 RIMMALDVFEELKGKG--YSSVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSL 448
           R+  ALD+  E++ +G    +   Y  ++    ++G V +A+ +F +M  +G  ++  ++
Sbjct: 87  RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKG-EVKPEAV 145

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
            ++  I  + + G +  A    ++++E     +VA YN L   L   G    A  LV + 
Sbjct: 146 MYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEE- 204

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
           +G     P  F Y + I   C+ G  +K +E+   M++ G     V  +++I  + K G 
Sbjct: 205 MGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQ 264

Query: 569 LEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           ++E  K+F     R +    + ++Y+ ++  H      D
Sbjct: 265 VQETDKLFDEAVRRGI--RPDLVLYNALINSHSTSGNID 301



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 55/105 (52%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E  +++++M +   +PD+  Y  +I   + + ++   LR+  EM        ++ Y
Sbjct: 333 GRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTY 392

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
             LI GLCK G+      + +EM ENGI  D + Y  LIEGL  E
Sbjct: 393 NALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 437


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 186/430 (43%), Gaps = 44/430 (10%)

Query: 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
           LC PD   Y+ +I      R+     R+ +EM+K  +      Y T+I GLC  GRV   
Sbjct: 28  LCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSA 87

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
              +R+M+ +        Y +L++ L    ++  A  +L+D++++G   ++  YN++I G
Sbjct: 88  LVHYRDMQRH-CAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLING 146

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
            C++   D+A  LF   +++  +PD  T N L+    +  R  +  KLL +M K      
Sbjct: 147 FCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKY----- 201

Query: 378 ADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGK 437
                      G E   +                   YN LM +L++ G+   A  L   
Sbjct: 202 -----------GCEPNFI------------------TYNTLMDSLVKSGKYIDAFNLAQM 232

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M   + + +  +F++ I    + G +  A E    + +   +P +  YN +  G C+   
Sbjct: 233 MLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANR 292

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           ID A  L+   +      P    Y   +  +C++ + ++  EV   +   G   + V CS
Sbjct: 293 IDDARQLLER-MTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCS 351

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFG 617
            +I G+CK   L++A K+   LRE +    A  +V   ILI    K  AD +   L FF 
Sbjct: 352 TLIDGLCKSRRLDDAEKL---LREMERNGSAPDVVAYTILIHGFCK--ADQLDKSLAFF- 405

Query: 618 LESKLKAKGC 627
             S++  KGC
Sbjct: 406 --SEMLDKGC 413



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 182/416 (43%), Gaps = 25/416 (6%)

Query: 97  RKNQFQWGPQVVTELSKLRRVTPD--LVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFA 153
           +   FQ   +++ E+ K R + P   +   ++K + +N  + S   H+   Q+    +  
Sbjct: 45  KARDFQQAYRLLDEMEK-RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVI 103

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           +Y  L   L ++                 RI++   ILE M    C P+V  Y  +I   
Sbjct: 104 TYTILVDALCKS----------------ARISDASLILEDMIEAGCAPNVVTYNTLINGF 147

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
               N+D  + ++ +M ++    DV  Y  LI G CK  R   G +L +EM + G   + 
Sbjct: 148 CKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNF 207

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             Y  L++ LV  GK   A +L + ++    +     +N +I   C+V Q D AY+LF++
Sbjct: 208 ITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQL 267

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KE 391
                  PD  T N ++       R+D+  +LL +M +       D+  +   + G  K 
Sbjct: 268 MTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEA--GCPPDVVTYNSIVSGLCKA 325

Query: 392 ERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
            ++  A +V+E L+  GY   V   + L+  L +   +  A  L  +M       + +++
Sbjct: 326 SQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAY 385

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           +I I    ++  + ++    +++++   VP+V  Y+ +   LCK   +    ML++
Sbjct: 386 TILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLK 441



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 153/349 (43%), Gaps = 60/349 (17%)

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           L+   V + K  +A DL K+ +      D   Y+++I G C+ + F +AY+L +   +  
Sbjct: 4   LLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRG 63

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK------LKFSVAADLEKFFEFLVGKEE 392
           + P  +  N ++    + GR+D+       M++      + +++  D        + K  
Sbjct: 64  IVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVD-------ALCKSA 116

Query: 393 RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM------------- 438
           RI  A  + E++   G + +V  YN L+    ++G + +A+ LF +M             
Sbjct: 117 RISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYN 176

Query: 439 -------------RGLNL---------EVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
                         G  L         E N ++++  +   V+SG  ++A      ++  
Sbjct: 177 ILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRR 236

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRS 531
              PS   +N +    CK+G++D A     +M  R CL      P  + Y + I   CR+
Sbjct: 237 DCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCL------PDIYTYNIMISGACRA 290

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
              +   ++L  MT+ GCPP+ V  ++I+SG+CK   ++EA +V+  LR
Sbjct: 291 NRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLR 339



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 2/166 (1%)

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+ A +   + ++A  LF          +S+++S  I    ++ D  +A    +++ +
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
              VP  A YN + KGLC  G +D+A++  RD   + A  P+   Y + +  +C+S    
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCA--PSVITYTILVDALCKSARIS 119

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
               +L +M + GC PN V  + +I+G CK G ++EA  +F  + E
Sbjct: 120 DASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLE 165



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 122/310 (39%), Gaps = 46/310 (14%)

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N ++    R K+  +AY LF+  +    +PD  T + L+    +       ++LL +MEK
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKA 431
                   +       +    R+  AL  + +++     SV  Y IL+ AL +   +  A
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDA 121

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
             +   M       N ++++  I    + G++ EA    N+++E S  P V  YN L  G
Sbjct: 122 SLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDG 181

Query: 492 LCKIGE------------------------------------ID----AAMMLVRDCLGN 511
            CK                                       ID    A MML RDC   
Sbjct: 182 YCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDC--- 238

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
               P+ F + L I   C+ G+ +   E+   MT  GC P+    + +ISG C+   +++
Sbjct: 239 ---KPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDD 295

Query: 572 ARKVFTNLRE 581
           AR++   + E
Sbjct: 296 ARQLLERMTE 305



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 41/87 (47%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ +  ++L +M RN   PDV AYT +I        LD  L  + EM        V+ Y 
Sbjct: 362 RLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYS 421

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGI 269
            +I  LCK  RV  G  L + M E G+
Sbjct: 422 IVIDKLCKSARVRDGCMLLKTMLERGV 448


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 140/311 (45%), Gaps = 34/311 (10%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PDV  YT +++ LA +  LD  L ++ ++ K     D + Y TLI G CK      G ++
Sbjct: 518 PDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQI 577

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F+ M+ NGI  D  IY VLI     EG V    +LL++++  G   D+  YN++I G C 
Sbjct: 578 FKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCS 637

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           +K F KA KLFEV       P+  T   L+    + GRMD+   + + M          L
Sbjct: 638 LKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSM----------L 687

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
           E+      G E  I+                   Y+ L+    +    + A  L+ KM G
Sbjct: 688 ER------GPEPNIL------------------TYSCLIDGYFKTENTESAFELYEKMLG 723

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             +  N +S+SI I    + G + EA       I    +P V AY  L +G CK+G +  
Sbjct: 724 DRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAE 783

Query: 501 AMMLVRDCLGN 511
           AMML    L N
Sbjct: 784 AMMLYDHMLVN 794



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 188/421 (44%), Gaps = 13/421 (3%)

Query: 176 ELMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAE-RNLDACLRVWEEMKK 231
            +MD+  R+ ++   +E+  +M +    P+V  Y+ +I  L    R L+AC  V+ ++ K
Sbjct: 350 SIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEAC-GVFGQILK 408

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
             +E  V+ Y +LI G CK   +  G  L+  M   G + D  +  +LI GL  +G + +
Sbjct: 409 QGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDE 468

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A       V  G   +  ++N++I G  R+K+     K++ +     + PD  T   L+ 
Sbjct: 469 ALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVK 528

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG- 408
             AE GR+D    L  Q+ K  FS   D   +   + G  K+      L +F+ ++  G 
Sbjct: 529 GLAEQGRLDEALALFFQLLKKGFS--PDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGI 586

Query: 409 YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           +  + IYN+L+      G V+  L L  ++    LE + ++++  I C   S  I     
Sbjct: 587 FPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMI-CGYCSLKIFSKAI 645

Query: 469 CHNKIIEMSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
              ++++  +  P+   +  L    CK G +D AM++    L      P    Y+  I  
Sbjct: 646 KLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLER-GPEPNILTYSCLIDG 704

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
             ++   E   E+  +M  +   PN V  S +I G+CK G +EEA   F     R LL +
Sbjct: 705 YFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPD 764

Query: 588 A 588
            
Sbjct: 765 V 765



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 116/495 (23%), Positives = 203/495 (41%), Gaps = 48/495 (9%)

Query: 92  ITDAFRKNQFQWGPQVVTELSKLRRVTP-DLVAEVLKVENNPTLASKFFHWAGKQKGYKH 150
           I  AF  N F +          L  + P  L   V ++ +NPT A +FF WA    G  H
Sbjct: 33  IAKAFHHNNFSFFNS-----GSLPNLQPAHLEPVVFQLRSNPTSALRFFEWAENFLGLCH 87

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
              S+  +A+ L R+ +F  A +V + M  Q    E+L       RN        Y+ ++
Sbjct: 88  PVQSFCGIAHVLLRHRMFDPATRVFDRMVGQFGNLEVLGEFHGSFRNYGSNPSTVYSFLL 147

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
                   +D  +  +  M K  V     A   ++  L    R+    E + EM +    
Sbjct: 148 HCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEEMCKG--- 204

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
               +Y  +    +  G+V K  +  + LV+ G    +   N I+ GLC   Q   A   
Sbjct: 205 --LGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDF 262

Query: 331 FEVTVQDDLAPDFSTVNPLL-VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG 389
           F++ V+   +P+  T + L+ V C E+ R+D  F L   M  ++  +  DL         
Sbjct: 263 FDMMVRSGPSPNLVTFSTLINVYCKEL-RLDEAFSLYNLM--IEKGIVPDL--------- 310

Query: 390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
                                   IY+IL+  L   G++++   LF       ++++ + 
Sbjct: 311 -----------------------VIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVI 347

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           FS  +  +V  GD+ +A E + ++++    P+V  Y+ L  GLC+ G +  A  +    L
Sbjct: 348 FSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQIL 407

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
                 P+   Y+  I   C+S        +   M ++G  P+ V+CS +I+G+ + G +
Sbjct: 408 KQ-GLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMM 466

Query: 570 EEARKVFTNLRERKL 584
           +EA + F    +R L
Sbjct: 467 DEALRFFFQAVKRGL 481



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/445 (21%), Positives = 193/445 (43%), Gaps = 11/445 (2%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           +  + M R+   P++  ++ +I V   E  LD    ++  M +  +  D++ Y  LI GL
Sbjct: 261 DFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGL 320

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
            + G++  G+ LF      G+ +D  I+  +++  V  G +GKA ++   ++  G   ++
Sbjct: 321 FRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNV 380

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             Y+ +I GLCR  +  +A  +F   ++  L P   T + L+    +   + + F L   
Sbjct: 381 VTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGI 440

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYNILMGALLEI 425
           M  L+     D+      + G   + MM  AL  F +   +G + +  ++N L+     +
Sbjct: 441 M--LRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRL 498

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
              +  L ++  M    +  + +++++ ++   E G + EA     ++++    P    Y
Sbjct: 499 KRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIY 558

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
             L  G CK  +    + + +    N    P    Y + I    R G  E ++E+L E+ 
Sbjct: 559 CTLIDGFCKKRDPATGLQIFKLMQSN-GIFPDICIYNVLINMFFREGCVENVLELLREII 617

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKT 605
           + G  P+ V  + +I G C      +A K+F  L+  +  T+ N I +  ++  + K   
Sbjct: 618 KYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGR--TQPNAITFTILIDAYCKDGR 675

Query: 606 AD---LVLSGLKFFGLESKLKAKGC 627
            D   L+ S +   G E  +    C
Sbjct: 676 MDDAMLIFSSMLERGPEPNILTYSC 700



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 83/189 (43%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G +  +LE+L ++ +   +PD+  Y  MI    + +     ++++E +K    + + + 
Sbjct: 603 EGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAIT 662

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  LI   CK GR+     +F  M E G   +   Y  LI+G         A +L + ++
Sbjct: 663 FTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKML 722

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 ++  Y+ +I GLC+    ++A   F+  +   L PD      L+    ++GR+ 
Sbjct: 723 GDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLA 782

Query: 361 NFFKLLAQM 369
               L   M
Sbjct: 783 EAMMLYDHM 791



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 22/183 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GR+ + + I   M     +P++  Y+ +I       N ++   ++E+M  D V  ++++
Sbjct: 673 DGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVS 732

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI GLCK G +      F+      +L D   YG+LI G    G++ +A  L   ++
Sbjct: 733 YSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHML 792

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP-----LLVC-CA 354
            +G   D                  KA  L E   QD  A  +STV P     LLVC  +
Sbjct: 793 VNGIMPD--------------DLLQKA--LAEYGFQDSQASIYSTVFPESPLNLLVCPVS 836

Query: 355 EMG 357
            MG
Sbjct: 837 SMG 839



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 74/158 (46%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           ++ +++ E ++    +P+   +T +I     +  +D  + ++  M +   E +++ Y  L
Sbjct: 642 SKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCL 701

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G  K        EL+ +M  + +  +   Y +LI+GL  +G + +A    +  +    
Sbjct: 702 IDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHL 761

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
             D+  Y  +I G C+V +  +A  L++  + + + PD
Sbjct: 762 LPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPD 799


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 190/421 (45%), Gaps = 12/421 (2%)

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
           K+ +N  +PD    T  I+    +  +   L   +++       D ++Y TLI GLCK G
Sbjct: 253 KILKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVG 312

Query: 253 RVVRGHELFREMKENGILI--DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
                 EL R  + +G L+  D  +Y  +I+G+  +  V  A DL  + V      D+  
Sbjct: 313 ETKAALELLR--RNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFT 370

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           YN++I G C V +   A  LF      ++ PD  T + L+    + G +     +LA M 
Sbjct: 371 YNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMM- 429

Query: 371 KLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYSS-VPIYNILMGALLEIGE 427
            +K S+  D+  +   + G      +  A  +F  +  +G ++ V  YNI++    +I  
Sbjct: 430 -MKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKM 488

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           V +A+ LF +M    +  + +++S  I    +SG I  A E  +++    Q P +  YN 
Sbjct: 489 VDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNS 548

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           +   LCK   +D A+ L+    G     P    Y + +  +C+SG+ E   +V  ++  +
Sbjct: 549 ILDALCKKHHVDKAITLLTKLKGQ-GIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVK 607

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           G   +    + +I G C  G  +EA  + + + E   + +A T  Y+ I++   +K   D
Sbjct: 608 GYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKT--YEIIILSLFEKDEND 665

Query: 608 L 608
           +
Sbjct: 666 M 666



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 179/385 (46%), Gaps = 11/385 (2%)

Query: 172 DQVP--ELMDSQGRIAEMLEILEKMRRN---LCKPDVFAYTAMIRVLAAERNLDACLRVW 226
           DQV    L++   ++ E    LE +RRN   L +PDV  Y  +I  +  +++++    ++
Sbjct: 297 DQVSYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLY 356

Query: 227 EEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
            E     +  DV  Y  LI G C  G++    +LF +M    I+ D   + +L++G   +
Sbjct: 357 SEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKD 416

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
           G + +A ++L  ++    + D+  Y+S++ G C V + +KA  +F       +  +  + 
Sbjct: 417 GNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSY 476

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL 404
           N ++    ++  +D   KL  +M   +  +  D+  +   + G  K  RI  AL++ +E+
Sbjct: 477 NIMINGFCKIKMVDEAMKLFKEMHHKQ--IFPDVITYSSLIDGLCKSGRISYALELVDEM 534

Query: 405 KGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
             +G    +  YN ++ AL +   V KA+ L  K++G  +  +  +++I ++   +SG +
Sbjct: 535 HYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKL 594

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
            +A +    ++       V AY  + +G C  G  D A+ L+     N    P    Y +
Sbjct: 595 EDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEEN-GCIPDAKTYEI 653

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEG 548
            IL +    E +   ++L EM   G
Sbjct: 654 IILSLFEKDENDMAEKLLREMIMRG 678



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 95/201 (47%), Gaps = 11/201 (5%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GRI+  LE++++M     +PD+  Y +++  L  + ++D  + +  ++K   +  D+  
Sbjct: 521 SGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNT 580

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ GLC+ G++    ++F ++   G  +D   Y V+I+G   +G   +A  LL  + 
Sbjct: 581 YTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKME 640

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE--------VTVQDDLAPDFSTVNPLLVC 352
           ++G   D   Y  II  L    + D A KL          V + DDL    +++      
Sbjct: 641 ENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGLLVALTDDLV---ASILVRRTW 697

Query: 353 CAEMGRMDNFFKLLAQMEKLK 373
           CA +     F  LL ++ +LK
Sbjct: 698 CARLALWVTFISLLLRVIELK 718


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 108/410 (26%), Positives = 175/410 (42%), Gaps = 13/410 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + E  E++E MR +  K   F Y  +I  L A+  +     +  EM+ + +   V+ 
Sbjct: 287 KGDLEEAAEMVEGMRLSK-KASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVT 345

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I GL + G+V      F EM+  G+  D   Y  L+ G    G + +A  L  DL 
Sbjct: 346 YNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLR 405

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-----VCCAE 355
            +G    +  YN +I G CR+   ++A +L E  V+    PD  T   L+      C   
Sbjct: 406 HAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLA 465

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI- 414
           M R   FF  +          A +     E  +G    I  A  + E +  +G SS  + 
Sbjct: 466 MAR--EFFDEMLSKGLQPDCFAYNTRIRAELTLGA---IAKAFRLREVMMLEGISSDTVT 520

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YNIL+  L + G +  A  L  KM    L+ + ++++  I  H E G + EA +    +I
Sbjct: 521 YNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMI 580

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                PS   Y       C+ G + +A    R  L      P E  Y + I  +CR+G  
Sbjct: 581 SDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVE-PNEITYNVLIHALCRTGRT 639

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           +      +EM + G  PN+   + +I G CK G  E+A + +  + +  +
Sbjct: 640 QLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGI 689



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 188/417 (45%), Gaps = 12/417 (2%)

Query: 177 LMDS---QGRIAEMLEILEKM--RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK 231
           L+DS   +GR  ++  +L++M  R + C P+   +  +I  LA + +L+    + E M+ 
Sbjct: 243 LLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRL 302

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
              +A    Y  LI GL   G V +  +L  EM+  GI+     Y  +I GL+  G+V  
Sbjct: 303 S-KKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEA 361

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A     ++   G + D+  YNS++ G C+     +A  LF       LAP   T N L+ 
Sbjct: 362 AQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILID 421

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGY 409
               +G ++   +L  +M  ++     D+  +   + G      + MA + F+E+  KG 
Sbjct: 422 GYCRLGDLEEARRLKEEM--VEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGL 479

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
                 YN  + A L +G + KA  L   M    +  ++++++I I    ++G++ +A +
Sbjct: 480 QPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKD 539

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
              K++     P    Y CL    C+ G +  A    +D + +    P+   Y + I   
Sbjct: 540 LQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISD-GLAPSAVTYTVFIHAY 598

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
           CR G          +M +EG  PNE+  + +I  +C+ G  + A + F  + ER L+
Sbjct: 599 CRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLV 655


>gi|218193284|gb|EEC75711.1| hypothetical protein OsI_12542 [Oryza sativa Indica Group]
          Length = 1031

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/439 (22%), Positives = 194/439 (44%), Gaps = 25/439 (5%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +QG++++   +L+KM+ N   P+   Y  ++     +    + LR+ ++M+K+ +EAD+ 
Sbjct: 242 TQGKLSKAESMLQKMK-NCRLPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLY 300

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I  LCK  R  R + L + M+E  +  D   Y  LI G  GEGK+  A  +   +
Sbjct: 301 TYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQM 360

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFD--------------------KAYKLFEVTVQDDL 339
           +    +  +  Y ++I G CR  + D                    KA ++ +  + D +
Sbjct: 361 LRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREVSKAKQILKCMLADGI 420

Query: 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALD 399
            PD  T + L+    +MG +    ++L++M+K        L     F   K      AL 
Sbjct: 421 DPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALK 480

Query: 400 VFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV 458
            F ++   G  ++  I+N L+ +    G + +A      M  + +  +  SF+  I  + 
Sbjct: 481 YFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYC 540

Query: 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE 518
           + G++LEA   ++ ++     P +  Y  L +GLC+ G +  A   +   L   A    E
Sbjct: 541 QRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEK-ACAIDE 599

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
                 ++ +C+ G  ++ +++  +M      P+    + ++ G CK G +  A  +   
Sbjct: 600 KTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKIVPALILLQM 659

Query: 579 LRERKLLTEANTIVYDEIL 597
           + E+ L+   +TI Y  +L
Sbjct: 660 MLEKGLV--PDTIAYTCLL 676



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 127/530 (23%), Positives = 217/530 (40%), Gaps = 82/530 (15%)

Query: 129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG----RI 184
           E    LA   F+   +Q   K + A+Y AL     RN     A +V   M   G     +
Sbjct: 347 EGKINLAIYIFNQMLRQ-SLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREV 405

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           ++  +IL+ M  +   PDV  Y+A+I  +     +     +   M+K  V  + + Y TL
Sbjct: 406 SKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTL 465

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI-----EGLVGE------------- 286
           +   CK G      + F ++  +G++ +  I+  L+     EG++ E             
Sbjct: 466 VFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKI 525

Query: 287 -----------------GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
                            G V +A  +  ++V  G+  D+  Y S++ GLC+     +A +
Sbjct: 526 SFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKE 585

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG 389
                ++   A D  T+N LLV   + G +D    L  +M  +  ++  D   +   L G
Sbjct: 586 FMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKM--VTRNILPDTYTYTILLDG 643

Query: 390 --KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMR-GLNLEV 445
             K  +I+ AL + + +  KG     I Y  L+  L+  G+VK A Y+F ++     L  
Sbjct: 644 FCKRGKIVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYA 703

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           + ++++  +  +++ G I E       + E    PS A+YN L  G  K G++   + L 
Sbjct: 704 DCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLY 763

Query: 506 RDCL------GNVA----------------------------SG--PTEFKYALTILHVC 529
           RD +       NV                             SG  P    Y   I   C
Sbjct: 764 RDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEESGLQPKHTHYIALINAKC 823

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           R G+ +   E+  +M   G  P+EV  S+I+ G+CK G +EEA  VF+++
Sbjct: 824 RVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSI 873



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 151/340 (44%), Gaps = 23/340 (6%)

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           +L+   V EGKV  A   +  + + G++A L   N+I+  L  + + +  +   + ++  
Sbjct: 165 LLVNAYVKEGKVLDAAAAIFFMDECGFKASLFSCNNILNALVGINKSEYVWLFLKESLDR 224

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA 397
               D +T N +L      G++     +L +M+  +   A        + V K+ R   A
Sbjct: 225 KFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMKNCRLPNAVTYNTILNWYV-KKGRCKSA 283

Query: 398 LDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
           L + ++++  G  + +  YNI++  L ++    +A  L  +MR +NL  +  S++  I  
Sbjct: 284 LRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHG 343

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD--------- 507
               G I  A    N+++  S  PSVA Y  L  G C+ G  D A  ++ +         
Sbjct: 344 FFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPR 403

Query: 508 ----------CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
                     C+      P    Y+  I  +C+ G   +  E+L+ M + G  PN V+ +
Sbjct: 404 EVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYT 463

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            ++   CK G  +EA K F ++    L+  AN+++++ +L
Sbjct: 464 TLVFYFCKAGHAKEALKYFVDIYRSGLV--ANSVIHNALL 501



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 175/408 (42%), Gaps = 5/408 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + +  E +  +    C  D      ++  +     LD  L + E+M    +  D   Y
Sbjct: 578 GHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTY 637

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV- 300
             L+ G CK G++V    L + M E G++ D   Y  L+ GLV EG+V  A  + ++++ 
Sbjct: 638 TILLDGFCKRGKIVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIIC 697

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G  AD   YNS++ G  +  Q ++  +L     ++++ P  ++ N L+    + G++ 
Sbjct: 698 KEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLS 757

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI---YNI 417
               L   M K          +   F + +   I +A+   E++  +     P    Y  
Sbjct: 758 RTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEESGLQPKHTHYIA 817

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ A   +G++  A  L   M+ L +  + ++ S  ++   + G + EA    + I+   
Sbjct: 818 LINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAG 877

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
            VP++A +  L  GLCK  +ID A  L +  + +         Y + I  +C        
Sbjct: 878 MVPTIATFTTLMHGLCKEFKIDDAFHL-KQLMESCGLKVDVVTYNVLITGLCNKKCICDA 936

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
           +++  EM  +G  PN      +   M   GT+++  K+  ++ +R ++
Sbjct: 937 LDLYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIV 984



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 186/458 (40%), Gaps = 54/458 (11%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G IAE  +  + M R     DV ++  +I       N+     V++ M +     D+  
Sbjct: 507 EGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICT 566

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +L+ GLC+GG +V+  E    + E    ID      L+ G+   G + +A DL + +V
Sbjct: 567 YGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMV 626

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM- 359
                 D   Y  ++ G C+  +   A  L ++ ++  L PD      LL      G++ 
Sbjct: 627 TRNILPDTYTYTILLDGFCKRGKIVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVK 686

Query: 360 --DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE----ERIMMALDVFEELKGKGYSSVP 413
                F+ +   E L     A       +L G +    ER+M  +      + + Y S  
Sbjct: 687 AASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMH-----ENEVYPSSA 741

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YNILM   ++ G++ + LYL+  M    ++ +++++ + I    E G I  A +   K+
Sbjct: 742 SYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKM 801

Query: 474 I--EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYALTILHVC 529
           +  E    P    Y  L    C++G+ID A  L  D   LG V   P+E   +  +  +C
Sbjct: 802 VLEESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVV---PSEVAESSIVRGLC 858

Query: 530 RSGEAEKIIEVLNEMTQEGCPP-----------------------------------NEV 554
           + G+ E+ I V + + + G  P                                   + V
Sbjct: 859 KCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVV 918

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
             + +I+G+C    + +A  ++  ++ + LL    T +
Sbjct: 919 TYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYI 956



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 77/170 (45%), Gaps = 3/170 (1%)

Query: 177 LMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L++++ R+ ++    E+ E M+     P   A ++++R L     ++  + V+  + +  
Sbjct: 818 LINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAG 877

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +   +  + TL+ GLCK  ++     L + M+  G+ +D   Y VLI GL  +  +  A 
Sbjct: 878 MVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDAL 937

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
           DL +++   G   ++  Y ++ G +          KL +      + P +
Sbjct: 938 DLYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIVPSY 987


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 198/424 (46%), Gaps = 9/424 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ E   +L++M  N   PD + Y+ +   L    + +  + ++E+  +  +  +     
Sbjct: 296 KMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGS 355

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            L+ GLCK G+V +  E+ ++  ENG++ D  IY   + G    G + KA   ++ +   
Sbjct: 356 ILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESF 415

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G R +   +NS+I   C +K+ DKA +  +   +  + P   T N L+    ++   D  
Sbjct: 416 GLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRC 475

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGY-SSVPIYNILM 419
           F++L QME++   V  ++  +   +  + K+ +I+ A  V  ++  +G   +  +YN+L+
Sbjct: 476 FQILEQMEEI--GVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLI 533

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
                +G+VK AL  F +M    +    +++++ I    + G + EA +   +I      
Sbjct: 534 DGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHS 593

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P V  YN L  G    G +   + L  + + N+   PT   Y   I    + G  E + +
Sbjct: 594 PDVITYNSLISGYANAGNVSKCLGLY-ETMKNLGIKPTVRTYHPLISGCSKEG-IELVEK 651

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           + NEM Q    P+ V+ +A+I    + G  ++A  +   + ++ +    + + Y+ +++ 
Sbjct: 652 LYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGI--HPDKMTYNSLILG 709

Query: 600 HMKK 603
           H ++
Sbjct: 710 HFRE 713



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 113/495 (22%), Positives = 209/495 (42%), Gaps = 43/495 (8%)

Query: 149 KHNFASYNALAYCLSRNNL---FRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           K  F+S + L  C S  ++      +D +  +      + E +E+ E MRR+   P + +
Sbjct: 84  KSTFSSPSDLFSCFSACSIPLRITLSDMLLSVCCKSKMLREAVELYEFMRRDGKLPSLVS 143

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
            + +   L  E+     + ++ E++      D   Y   I    K   +  G E    M+
Sbjct: 144 LSLLFSCLVNEKQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMR 203

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           + G+  +  IY VLI GL  E ++  A  +  ++ +      +  YN++I G C+V + D
Sbjct: 204 KRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELD 263

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME-------KLKFSVAA 378
            A+K+ E   +  +AP+  T N LL    +M +M     LL +ME          +S+  
Sbjct: 264 AAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILF 323

Query: 379 D-----------LEKFFE---------------FLVG--KEERIMMALDVFEELKGKG-Y 409
           D           +E + +                L G  K+ ++  A ++ ++    G  
Sbjct: 324 DGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLV 383

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
           +   IYN  +     IG++ KA+    +M    L  NS++F+  I    +  ++ +A E 
Sbjct: 384 ADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEW 443

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
             K+ E    PSV  YN L  G  K+   D    ++   +  +   P    Y   I  +C
Sbjct: 444 VKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQ-MEEIGVKPNVVSYGSLINCLC 502

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           + G+  +   VL +M   G  PN  + + +I G C  G +++A + F  +   ++   + 
Sbjct: 503 KDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEI---SP 559

Query: 590 TIVYDEILIEHMKKK 604
           T+V   +LI+ + KK
Sbjct: 560 TLVTYNVLIDGLCKK 574



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/411 (21%), Positives = 182/411 (44%), Gaps = 13/411 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + + +  +E+M     +P+   + ++I      + +D      ++M +  V   V  Y
Sbjct: 400 GDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETY 459

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G  K     R  ++  +M+E G+  +   YG LI  L  +GK+ +A  +L+D++ 
Sbjct: 460 NTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMIC 519

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   +  +YN +I G C V +   A + F+  ++ +++P   T N L+    + G++  
Sbjct: 520 RGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTE 579

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGYS-SVPIYNIL 418
               L Q+     S   D+  +   + G      +   L ++E +K  G   +V  Y+ L
Sbjct: 580 AEDFLTQITSSGHS--PDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPL 637

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G ++    L+ +M  +NL  + + ++  I C+ E G+  +A   H  +++   
Sbjct: 638 ISGCSKEG-IELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGI 696

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS---GPTEFKYALTILHVCRSGEAE 535
            P    YN L  G  + G++      ++D + N+ +    P    Y + +   C   +  
Sbjct: 697 HPDKMTYNSLILGHFREGKLSN----IKDLVNNMKAKELAPKADTYDILVKGHCDLKDFS 752

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
                  EM +    PN  IC+ + +G+ + G L+E + + + +  + ++ 
Sbjct: 753 GAYVWYREMVENNFLPNASICNELTAGLEQEGRLQEVQVICSEMNVKGIIN 803



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/413 (20%), Positives = 172/413 (41%), Gaps = 9/413 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG++ +  EIL+K   N    D   Y   +       +++  +   E M+   +  + + 
Sbjct: 364 QGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSIT 423

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + +LI   C    + +  E  ++M E G+      Y  LI+G        +   +L+ + 
Sbjct: 424 FNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQME 483

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G + ++  Y S+I  LC+  +  +A  +    +   + P+    N L+     +G++ 
Sbjct: 484 EIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVK 543

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
           +  +   +M  ++  ++  L  +   + G  K+ ++  A D   ++   G+S  V  YN 
Sbjct: 544 DALRFFDEM--MRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNS 601

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ-CHVESGDILEACECHNKIIEM 476
           L+      G V K L L+  M+ L ++    ++   I  C  E  +++E  + +N++++M
Sbjct: 602 LISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGIELVE--KLYNEMLQM 659

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
           + +P    YN +     +IG    A  L +  L +    P +  Y   IL   R G+   
Sbjct: 660 NLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGML-DQGIHPDKMTYNSLILGHFREGKLSN 718

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           I +++N M  +   P       ++ G C       A   +  + E   L  A+
Sbjct: 719 IKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNAS 771



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 121/295 (41%), Gaps = 22/295 (7%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G K N  SY +L  CL ++                G+I E   +L  M      P+   Y
Sbjct: 486 GVKPNVVSYGSLINCLCKD----------------GKILEAEIVLRDMICRGVLPNAQVY 529

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +I        +   LR ++EM +  +   ++ Y  LI GLCK G++    +   ++  
Sbjct: 530 NMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITS 589

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           +G   D   Y  LI G    G V K   L + + + G +  +  Y+ +I G C  +  + 
Sbjct: 590 SGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISG-CSKEGIEL 648

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
             KL+   +Q +L PD    N ++ C AE+G     + L   M  L   +  D   +   
Sbjct: 649 VEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGM--LDQGIHPDKMTYNSL 706

Query: 387 LVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
           ++G  +E ++    D+   +K K  +     Y+IL+    ++ +   A   + +M
Sbjct: 707 ILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREM 761


>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g31840
 gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 840

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 110/456 (24%), Positives = 206/456 (45%), Gaps = 29/456 (6%)

Query: 195 RRNLCK---PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           +R LC+   P+V  YT +I+ L  +  +     ++ ++ K  +E  ++ Y +LI G CK 
Sbjct: 380 KRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKC 439

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           G +  G  L+ +M + G   D  IYGVL++GL  +G +  A      ++    R ++ ++
Sbjct: 440 GNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVF 499

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           NS+I G CR+ +FD+A K+F +     + PD +T   ++      GR++    L  +M K
Sbjct: 500 NSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFK 559

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKK 430
           +     A           K  +  + L +F+ + + K  + + + N+++  L +   ++ 
Sbjct: 560 MGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIED 619

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV----PSVAAYN 486
           A   F  +    +E + ++++  I  +     + EA     +I E+ +V    P+     
Sbjct: 620 ASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEA----ERIFELLKVTPFGPNTVTLT 675

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L   LCK  ++D A+ +    +    S P    Y   +    +S + E   ++  EM +
Sbjct: 676 ILIHVLCKNNDMDGAIRMF-SIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQE 734

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE-------------ANTIVY 593
           +G  P+ V  S II G+CK G ++EA  +F    + KLL +                +V 
Sbjct: 735 KGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVE 794

Query: 594 DEILIEHMKK---KTADLVLSGLKFFGLESKLKAKG 626
             +L EHM +   K  DL+   L  +     L +KG
Sbjct: 795 AALLYEHMLRNGVKPDDLLQRALSEYNPPKWLMSKG 830



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 147/329 (44%), Gaps = 34/329 (10%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  E L++   M     KPDV  +T ++RV   E  L+  L ++  M K  +E D +AY 
Sbjct: 511 RFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYC 570

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TLI   CK  +   G +LF  M+ N I  D A+  V+I  L    ++  A     +L++ 
Sbjct: 571 TLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEG 630

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
               D+  YN++I G C +++ D+A ++FE+       P+  T+  L+    +   MD  
Sbjct: 631 KMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGA 690

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422
            ++        FS+ A+                         KG   ++V  Y  LM   
Sbjct: 691 IRM--------FSIMAE-------------------------KGSKPNAVT-YGCLMDWF 716

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            +  +++ +  LF +M+   +  + +S+SI I    + G + EA    ++ I+   +P V
Sbjct: 717 SKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDV 776

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
            AY  L +G CK+G +  A +L    L N
Sbjct: 777 VAYAILIRGYCKVGRLVEAALLYEHMLRN 805



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 101/478 (21%), Positives = 195/478 (40%), Gaps = 81/478 (16%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+V  +  +I        +D    +++ M++  +E D++AY TLI G  K G +  GH+L
Sbjct: 284 PNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKL 343

Query: 261 FREMKENGILIDRAI-----------------------------------YGVLIEGLVG 285
           F +    G+ +D  +                                   Y +LI+GL  
Sbjct: 344 FSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQ 403

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           +G++ +A  +   ++  G    +  Y+S+I G C+       + L+E  ++    PD   
Sbjct: 404 DGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVI 463

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE 403
              L+   ++ G M +  +   +M  L  S+  ++  F   + G  +  R   AL VF  
Sbjct: 464 YGVLVDGLSKQGLMLHAMRFSVKM--LGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRL 521

Query: 404 LKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE--- 459
           +   G    V  +  +M   +  G +++AL+LF +M  + LE ++L++   I    +   
Sbjct: 522 MGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMK 581

Query: 460 ----------------SGDILEAC--------ECH---------NKIIEMSQVPSVAAYN 486
                           S DI   C        +CH         N +IE    P +  YN
Sbjct: 582 PTIGLQLFDLMQRNKISADI-AVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYN 640

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            +  G C +  +D A  +  + L     GP      + I  +C++ + +  I + + M +
Sbjct: 641 TMICGYCSLRRLDEAERIF-ELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAE 699

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           +G  PN V    ++    K   +E + K+F  ++E+ +   + +IV   I+I+ + K+
Sbjct: 700 KGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGI---SPSIVSYSIIIDGLCKR 754



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 131/582 (22%), Positives = 247/582 (42%), Gaps = 73/582 (12%)

Query: 88  IARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWA---GK 144
           +A  I+ A ++  F      V   S L+R   +LV  +L +E+ P  A K+F WA   GK
Sbjct: 42  LAAGISKAIKEGNFNLLDSSVYG-SNLQRNETNLV--LLSLESEPNSALKYFRWAEISGK 98

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQV-PELMDSQGRIAEMLEILE--KMRRNLCK- 200
                    S+  +A+ L RN +F  AD+V  E++ ++G+   +L  +    +  ++CK 
Sbjct: 99  D-------PSFYTIAHVLIRNGMFDVADKVFDEMITNRGKDFNVLGSIRDRSLDADVCKF 151

Query: 201 --------------PDVFAYTA-------------MIRVLAAERNLDACLRVWEEMKKDL 233
                          ++F Y+              M+  L     +D     ++++ +  
Sbjct: 152 LMECCCRYGMVDKALEIFVYSTQLGVVIPQDSVYRMLNSLIGSDRVDLIADHFDKLCRGG 211

Query: 234 VE-ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
           +E + V A+  ++  L   G V +  +  R + E G  +       +++GL  + ++  A
Sbjct: 212 IEPSGVSAHGFVLDALFCKGEVTKALDFHRLVMERGFRVGIVSCNKVLKGLSVD-QIEVA 270

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
             LL  ++D G   ++  + ++I G C+  + D+A+ LF+V  Q  + PD    + L+  
Sbjct: 271 SRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDG 330

Query: 353 CAEMGRMDNFFKLLAQ-------MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELK 405
             + G +    KL +Q       ++ + FS   D+         K   +  A  V++ + 
Sbjct: 331 YFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYV-------KSGDLATASVVYKRML 383

Query: 406 GKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
            +G S +V  Y IL+  L + G + +A  ++G++    +E + +++S  I    + G++ 
Sbjct: 384 CQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLR 443

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
                +  +I+M   P V  Y  L  GL K G +  AM      LG           +L 
Sbjct: 444 SGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSL- 502

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           I   CR    ++ ++V   M   G  P+    + ++      G LEEA  +F   R  K+
Sbjct: 503 IDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEA--LFLFFRMFKM 560

Query: 585 LTEANTIVYDEIL---IEHMKKKTADLVLSGLKFFGLESKLK 623
             E + + Y  ++    +HMK         GL+ F L  + K
Sbjct: 561 GLEPDALAYCTLIDAFCKHMKPTI------GLQLFDLMQRNK 596



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/398 (19%), Positives = 164/398 (41%), Gaps = 35/398 (8%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +     + E M +    PDV  Y  ++  L+ +  +   +R   +M    +  +V+ +
Sbjct: 440 GNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVF 499

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI G C+  R     ++FR M   GI  D A +  ++   + EG++ +A  L   +  
Sbjct: 500 NSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFK 559

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   Y ++I   C+  +     +LF++  ++ ++ D +  N ++           
Sbjct: 560 MGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVI----------- 608

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
              LL +  +++     D  KFF  L+                +GK    +  YN ++  
Sbjct: 609 --HLLFKCHRIE-----DASKFFNNLI----------------EGKMEPDIVTYNTMICG 645

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
              +  + +A  +F  ++      N+++ +I I    ++ D+  A    + + E    P+
Sbjct: 646 YCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPN 705

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
              Y CL     K  +I+ +  L  + +      P+   Y++ I  +C+ G  ++   + 
Sbjct: 706 AVTYGCLMDWFSKSVDIEGSFKLFEE-MQEKGISPSIVSYSIIIDGLCKRGRVDEATNIF 764

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           ++       P+ V  + +I G CK G L EA  ++ ++
Sbjct: 765 HQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHM 802



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 21/210 (10%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
           ASKFF+   + K  + +  +YN +   YC  R             +D   RI E+L++  
Sbjct: 620 ASKFFNNLIEGK-MEPDIVTYNTMICGYCSLRR------------LDEAERIFELLKVTP 666

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
                   P+    T +I VL    ++D  +R++  M +   + + + Y  L+    K  
Sbjct: 667 ------FGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSV 720

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
            +    +LF EM+E GI      Y ++I+GL   G+V +A ++    +D+    D+  Y 
Sbjct: 721 DIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYA 780

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
            +I G C+V +  +A  L+E  +++ + PD
Sbjct: 781 ILIRGYCKVGRLVEAALLYEHMLRNGVKPD 810



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 21/163 (12%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE 176
           VT  ++  VL   N+   A + F     +KG K N  +Y  L    S++           
Sbjct: 672 VTLTILIHVLCKNNDMDGAIRMFSIMA-EKGSKPNAVTYGCLMDWFSKS----------- 719

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
            +D +G      ++ E+M+     P + +Y+ +I  L     +D    ++ +     +  
Sbjct: 720 -VDIEGS----FKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLP 774

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGI----LIDRAI 275
           DV+AY  LI G CK GR+V    L+  M  NG+    L+ RA+
Sbjct: 775 DVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKPDDLLQRAL 817


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 115/507 (22%), Positives = 207/507 (40%), Gaps = 71/507 (14%)

Query: 62  HYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDL 121
           HYL N + ++PP DP T+ +   LS     I    R         V+ + S +R   P  
Sbjct: 19  HYLSNPR-KTPPPDP-TYTISS-LSLDFSQIISTVRSISPSIVRHVIAQSSAVRHGIP-- 73

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ 181
           V +VL           FF+WA  Q G++ +  +YN +     +  +F  A    +LM ++
Sbjct: 74  VPQVLA----------FFNWASNQDGFRKSPEAYNEMVDFSGQVMMFDVAWYFIDLMKAR 123

Query: 182 -------------------GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
                              G  AE +    +M    CKPD  A++ +I +L  ER     
Sbjct: 124 NVDVTVETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQA 183

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
              ++ +K D  E DV+ Y  L+ G C+ G +     +F                     
Sbjct: 184 QEFFDSLK-DKFEPDVIVYTNLVRGWCRAGNISEAERVF--------------------- 221

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
             GE KV            +G + ++  Y+ +I  LCR  Q  +A+ +F   +     P+
Sbjct: 222 --GEMKV------------AGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPN 267

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
             T N L+    + GR +   ++  QM++L          F      K+E +  A+ V  
Sbjct: 268 SITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCKDENLEDAIKVIG 327

Query: 403 ELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
            +  KG + +   +N L G + ++G+V  A  ++ KM+ LN E N+++++  ++  V S 
Sbjct: 328 LMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKELNCEANTVTYNTLMKMFVASK 387

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
                 +   ++ E    P+V  Y  L    C +G  + A    R+ +      P+   Y
Sbjct: 388 STDMVLKLKTEMDENKIEPNVNTYKVLITMYCGMGHWNNAYKFFREMIDEKCLRPSLPVY 447

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEG 548
            + +  + ++G+ +K  E++ +M   G
Sbjct: 448 DMVLQQLRKAGQLKKHEELVEKMVDRG 474



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 133/315 (42%), Gaps = 17/315 (5%)

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G+R     YN ++    +V  FD A+   ++    ++     T   L+      G     
Sbjct: 89  GFRKSPEAYNEMVDFSGQVMMFDVAWYFIDLMKARNVDVTVETFLILMRRYVRAGLAAEA 148

Query: 363 FKLLAQME-------KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIY 415
                +ME       K+ FS+   +       + +E R   A + F+ LK K    V +Y
Sbjct: 149 IHAFNRMEDYNCKPDKIAFSILISI-------LCRERRASQAQEFFDSLKDKFEPDVIVY 201

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             L+      G + +A  +FG+M+   ++ N  ++SI I      G I  A +   ++++
Sbjct: 202 TNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLD 261

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P+   YN L +   K G  +  +  V + +  +   P    Y   I   C+    E
Sbjct: 262 AGCQPNSITYNSLMRIHVKAGRTEKVLQ-VYNQMKRLGCEPDTVTYNFLIETHCKDENLE 320

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
             I+V+  M ++GC PN    + +   + K G +  A +++  ++E  L  EANT+ Y+ 
Sbjct: 321 DAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKE--LNCEANTVTYNT 378

Query: 596 ILIEHMKKKTADLVL 610
           ++   +  K+ D+VL
Sbjct: 379 LMKMFVASKSTDMVL 393


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 171/354 (48%), Gaps = 6/354 (1%)

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           E  ++ + +L+ G C+G RV     +F +M   G   +  IY  +I+GL    +V  A D
Sbjct: 148 EPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALD 207

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           LL  +   G   D+  YNS+I GLC   ++  A ++     + ++ PD  T N L+  C 
Sbjct: 208 LLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACV 267

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSS 411
           + GR+    +   +M  ++ S+  D+  +   + G     R+  A ++F  +  KG +  
Sbjct: 268 KEGRVSEAEEFYEEM--IRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPD 325

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           V  Y+IL+    +  +V+  + LF +M    +  N+++++I IQ +  +G +  A E   
Sbjct: 326 VVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFR 385

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           +++     P++  YN L  GLC  G+I+ A++++ D   N         Y + I  +C++
Sbjct: 386 RMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADI-VTYNIIIRGMCKA 444

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
           GE     ++   +  +G  P+    + ++ G+ K G   EA  +F  ++E  +L
Sbjct: 445 GEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGIL 498



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 159/324 (49%), Gaps = 8/324 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ + L + ++M     KP+V  Y  +I  L   + +D  L +   M+KD +  DV+ Y 
Sbjct: 166 RVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYN 225

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +LI GLC  GR      +   M +  I  D   +  LI+  V EG+V +A +  ++++  
Sbjct: 226 SLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRR 285

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
               D+  Y+ +I GLC   + D+A ++F   V     PD  T + L+    +  ++++ 
Sbjct: 286 SLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHG 345

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILM 419
            KL  +M +    V  +   +   + G  +  ++ +A ++F  +   G + ++  YN+L+
Sbjct: 346 MKLFCEMSQR--GVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLL 403

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L + G+++KAL +   M+   ++ + ++++I I+   ++G++ +A + +  +     +
Sbjct: 404 HGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLM 463

Query: 480 PSVAAYNCLTKGLCKIG---EIDA 500
           P +  Y  +  GL K G   E DA
Sbjct: 464 PDIWTYTTMMLGLYKKGLRREADA 487



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 117/263 (44%), Gaps = 5/263 (1%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S GR ++   ++  M +    PDVF + A+I     E  +      +EEM +  ++ D++
Sbjct: 233 SSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIV 292

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI GLC   R+    E+F  M   G   D   Y +LI G     KV     L  ++
Sbjct: 293 TYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM 352

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   +   Y  +I G CR  + + A ++F   V   + P+  T N LL    + G++
Sbjct: 353 SQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKI 412

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           +    +LA M+  K  + AD+  +   + G  K   +  A D++  L  +G    +  Y 
Sbjct: 413 EKALVILADMQ--KNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYT 470

Query: 417 ILMGALLEIGEVKKALYLFGKMR 439
            +M  L + G  ++A  LF KM+
Sbjct: 471 TMMLGLYKKGLRREADALFRKMK 493



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 150/358 (41%), Gaps = 24/358 (6%)

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G C   R       +REM  NGI                  K+  + DL   +V    
Sbjct: 33  ICGFCFSRRAYSNGSDYREMLRNGIRF---------------MKLDDSLDLFFHMVQCRP 77

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
              +  ++ ++  + ++K++D    L+E      +  +  T N LL C     ++     
Sbjct: 78  LPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALS 137

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
            L +M KL       +  F   L G  + +R+  AL +F+++ G GY  +V IYN ++  
Sbjct: 138 FLGKMIKLGHE--PSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDG 195

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L +  +V  AL L  +M    +  + ++++  I     SG   +A    + + +    P 
Sbjct: 196 LCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPD 255

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V  +N L     K G +  A     + +   +  P    Y+L I  +C     ++  E+ 
Sbjct: 256 VFTFNALIDACVKEGRVSEAEEFYEEMIRR-SLDPDIVTYSLLIYGLCMYSRLDEAEEMF 314

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
             M  +GC P+ V  S +I+G CK   +E   K+F  + +R ++   NT+ Y  ILI+
Sbjct: 315 GFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVR--NTVTY-TILIQ 369



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 66/141 (46%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +   YT +I+       L+    ++  M    V  +++ Y  L+ GLC  G++ +   + 
Sbjct: 360 NTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVIL 419

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            +M++NG+  D   Y ++I G+   G+V  A D+   L   G   D+  Y +++ GL + 
Sbjct: 420 ADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKK 479

Query: 322 KQFDKAYKLFEVTVQDDLAPD 342
               +A  LF    +D + P+
Sbjct: 480 GLRREADALFRKMKEDGILPN 500


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 155/329 (47%), Gaps = 6/329 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+AE  ++ E        PDVF Y  +I  L   + L+  L +++E ++  V  DV  Y
Sbjct: 280 GRLAEATQLFESTMTKESVPDVFTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLDVFTY 338

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+    K GR  +  E+F  M++ G + D  +Y VLI  L  +GKV +A +LL+D+  
Sbjct: 339 SYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNR 398

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   YN +I  L    +++KAY  F +  +   +PD  T N LL    ++ R D 
Sbjct: 399 KGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDE 458

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
              L  +M+  K     DL  F   +  + K  R+  AL+    L   G++ +  IYN L
Sbjct: 459 ACDLFDEMQANK--CMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNAL 516

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +      G+V K   LF  M   +   +S++++I +      G    A E   +++    
Sbjct: 517 ISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGH 576

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
            P++A YN L + L   G+++ A  L ++
Sbjct: 577 TPALATYNVLIRSLSMAGQVEDAYTLFKE 605



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 115/482 (23%), Positives = 205/482 (42%), Gaps = 77/482 (15%)

Query: 176 ELMDSQGRIAEM---LEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK 231
           E + + GR  ++   + +L+ MRR N C+PD  A+TA +  L   R ++  + ++++M++
Sbjct: 58  ECIQAFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRE 117

Query: 232 DLVEA-DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI-YGVLIEGLVGEGKV 289
               A DV+AY TLI G CK G   R  ++FR +K+ G     A+ +  L+  L    + 
Sbjct: 118 TCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRA 177

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
             A  + ++++ +G +AD+ + N++I   CR+    +A +L         A D  T   L
Sbjct: 178 TDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGIL 237

Query: 350 LVCCAEMGRMDNF--FKLLAQMEKLKFSVA---------------ADLEKFFEFLVGKE- 391
           +      G+M     F  LA+ +    S                 A+  + FE  + KE 
Sbjct: 238 VNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKES 297

Query: 392 ----------------ERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL 434
                           +++  AL +F+E +  G    V  Y+ LM A  + G   KAL +
Sbjct: 298 VPDVFTYNLLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEV 357

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEA---------------CECHNKIIEM--- 476
           F  M+      +++ +++ I C  + G + EA               C  +N +I++   
Sbjct: 358 FYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSS 417

Query: 477 -----------------SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
                               P V  YN L  GL K+   D A  L  +   N    P   
Sbjct: 418 CGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCM-PDLT 476

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            +   I  + ++G  E  +E    + + G  PN  I +A+ISG C+ G +++  ++F ++
Sbjct: 477 TFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDM 536

Query: 580 RE 581
            E
Sbjct: 537 IE 538



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 96/452 (21%), Positives = 180/452 (39%), Gaps = 55/452 (12%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-------------------GRIAEM 187
           G K +    N L +C  R  + R A ++   M +                    G++ E+
Sbjct: 191 GLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEV 250

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
              +E  R + C      Y  +I+       L    +++E         DV  Y  L++ 
Sbjct: 251 ASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTY-NLLIA 309

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK  ++     LF+E ++ G+++D   Y  L++     G+  KA ++  ++  +G   D
Sbjct: 310 LCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPD 369

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
             +YN +I  L +  + D+A +L E   +  + PD  T N ++   +  GR +  +    
Sbjct: 370 TVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFG 429

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE 427
            M++ K S                                    V  YN L+  L ++  
Sbjct: 430 MMKRRKHS----------------------------------PDVVTYNTLLNGLKKLRR 455

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
             +A  LF +M+      +  +F   I    ++G + +A E   ++++M   P+   YN 
Sbjct: 456 TDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNA 515

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L  G C+ G++D    L +D +   +  P    Y + +L   R G     +E+L EM +E
Sbjct: 516 LISGFCRSGQVDKGYELFQDMI-ECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVRE 574

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           G  P     + +I  +   G +E+A  +F  +
Sbjct: 575 GHTPALATYNVLIRSLSMAGQVEDAYTLFKEM 606



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 133/298 (44%), Gaps = 54/298 (18%)

Query: 155 YNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
           YN L  CL +                QG++ E LE+LE M R    PD   Y  +I VL+
Sbjct: 373 YNVLISCLGK----------------QGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLS 416

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
           +    +     +  MK+     DV+ Y TL+ GL K  R     +LF EM+ N  + D  
Sbjct: 417 SCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLT 476

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
            +G LI+ L   G++  A +    LV  G+  +  IYN++I G CR  Q DK Y+LF+  
Sbjct: 477 TFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDM 536

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI 394
           ++    PD  T   L+                     L FS              +    
Sbjct: 537 IECSCFPDSITYTILV---------------------LGFS--------------RRGHT 561

Query: 395 MMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLS 449
            MA+++ +E+  +G++ ++  YN+L+ +L   G+V+ A  LF +M  +G N ++ + S
Sbjct: 562 SMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYS 619



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 167/394 (42%), Gaps = 43/394 (10%)

Query: 207 TAMIRVLAAERNLDACLRVWEEMKK-DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           T  I+      +LDA + + ++M++ +  + D +A+   +  LC+  RV +   LF +M+
Sbjct: 57  TECIQAFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMR 116

Query: 266 EN-GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY-RADLGIYNSIIGGLCRVKQ 323
           E      D   Y  LI G    G   +A D+ + L   G  + +   +++++  LC++ +
Sbjct: 117 ETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSR 176

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
              A  +F+  +   L  D +  N L+ C   +G +    +LL  M              
Sbjct: 177 ATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHA---------- 226

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
                        A D F             Y IL+ A    G++ +        R    
Sbjct: 227 ------------CARDAF------------TYGILVNAHCRAGQMHEVASFMELARHDGC 262

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
            +++++++  IQ  +  G + EA +     +    VP V  YN L   LCK  +++ A+ 
Sbjct: 263 ALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLI-ALCKSKQLEEALT 321

Query: 504 LVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
           L ++   G V      + Y +      ++G A K +EV   M + GC P+ V+ + +IS 
Sbjct: 322 LFQEAEQGGVVLDVFTYSYLMDAFG--KAGRAAKALEVFYNMQKAGCMPDTVVYNVLISC 379

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANT--IVYD 594
           + K G ++EA ++  ++  + ++ +  T  IV D
Sbjct: 380 LGKQGKVDEALELLEDMNRKGIMPDCRTYNIVID 413



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 101/234 (43%), Gaps = 21/234 (8%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKH--NFASYNALAYCLSRNNLFRAADQVP 175
           T ++V +VL        A  FF   G  K  KH  +  +YN L   L +    R  D+  
Sbjct: 407 TYNIVIDVLSSCGRYEKAYSFF---GMMKRRKHSPDVVTYNTLLNGLKK---LRRTDEAC 460

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           +L D             +M+ N C PD+  +  +I  LA    ++  L     + K    
Sbjct: 461 DLFD-------------EMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHA 507

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            +   Y  LI G C+ G+V +G+ELF++M E     D   Y +L+ G    G    A +L
Sbjct: 508 PNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMEL 567

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
           L+++V  G+   L  YN +I  L    Q + AY LF+  +     PD  T + L
Sbjct: 568 LQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSAL 621



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 21/197 (10%)

Query: 405 KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL-EVNSLSFSIAIQ--CHVES- 460
           KG G S V     +  A    G++  A+ +   MR  N  + ++++F+ A+   C V   
Sbjct: 47  KGVGLSEVTCTECIQ-AFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRV 105

Query: 461 -------GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
                   D+ E C+C          P V AYN L  G CK G+ D A+ + R      +
Sbjct: 106 EQAMTLFDDMRETCDC---------APDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGS 156

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
             P    +   ++ +C+   A   + V  EM   G   +  +C+ +I   C+ G L +AR
Sbjct: 157 CKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQAR 216

Query: 574 KVFTNLRERKLLTEANT 590
           ++  ++       +A T
Sbjct: 217 RLLHHMTAHACARDAFT 233


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 180/413 (43%), Gaps = 13/413 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GRI E L  + +     C PD   + A++  L    ++   L + + M +   E DV  
Sbjct: 282 EGRIEEALRFIYE-EEGFC-PDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYT 339

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI GLCK G +    E+   M       +   Y  LI  L  E  V  A +L + L 
Sbjct: 340 YNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLT 399

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D+  +NS+I GLC     + A +LFE   +    PD  T + L+       R+ 
Sbjct: 400 SKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLK 459

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYN 416
               LL +ME    S  A     +  L+    K  R+  A D+F++++  G S S   YN
Sbjct: 460 EALMLLKEME---LSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYN 516

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  L +   V++A  L  +M    L+ +  +++  ++   + GDI  A +    +   
Sbjct: 517 TLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLN 576

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAE 535
              P +  Y  L  GLCK G +D A  L+R   +  +   P    Y   I  +C+    +
Sbjct: 577 GCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQ--AYNPVIQALCKRKRTK 634

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCK-HGTLEEARKVFTNLRERKLLTE 587
           + + +  EM ++G PP+ +    +  G+C   G ++EA      + E+ +L E
Sbjct: 635 EAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPE 687



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 113/526 (21%), Positives = 216/526 (41%), Gaps = 68/526 (12%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRA------- 170
           +P  + ++L+ + + + A   F WA  Q  Y  + + ++ L   L+R   F +       
Sbjct: 58  SPSQLLDLLRRQPDSSSALSLFQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLLRQ 117

Query: 171 --ADQVP-----------ELMDSQGRIAEMLEILEKMRRNLC-KPDVFAYTAMIRVLAAE 216
             + ++P               S    AE+  +   M R+   KPD   Y   + +L   
Sbjct: 118 MHSSKIPVDESTFLIFLETYATSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSLLVKA 177

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
             L     +  +M  D V  DV  +  LI  LCK  ++     +  +M   G+  D   +
Sbjct: 178 NKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTF 237

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
             L++G + E  V  A  + + +V+SG        N ++ GLC+  + ++A +   +  +
Sbjct: 238 TTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRF--IYEE 295

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
           +   PD  T N L+      G +    +++  M          LEK FE           
Sbjct: 296 EGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFM----------LEKGFE----------- 334

Query: 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
            LDV+             YN L+  L ++GE+ +A+ +   M   + E N+++++  I  
Sbjct: 335 -LDVY------------TYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGT 381

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
             +   +  A E    +     +P V  +N L +GLC     + AM L  + +      P
Sbjct: 382 LCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEE-MKEKGCDP 440

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
            EF Y++ I  +C     ++ + +L EM   GC  N V+ + +I G+CK+  + +A  +F
Sbjct: 441 DEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIF 500

Query: 577 TNLRERKLLTEANTIVYDEIL--------IEHMKKKTADLVLSGLK 614
             +    L    +++ Y+ ++        +E   +    +++ GLK
Sbjct: 501 DQM--EMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLK 544



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 158/358 (44%), Gaps = 27/358 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           +KG++ +  +YN+L   L +                 G I E +EIL  M    C+P+  
Sbjct: 330 EKGFELDVYTYNSLISGLCK----------------LGEIDEAVEILHHMVSRDCEPNTV 373

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  +I  L  E +++A   +   +    V  DV  + +LI GLC         ELF EM
Sbjct: 374 TYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEM 433

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           KE G   D   Y +LIE L  E ++ +A  LLK++  SG   ++ +YN++I GLC+  + 
Sbjct: 434 KEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRV 493

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ--MEKL---KFSVAAD 379
             A  +F+      ++    T N L+    +  R++   +L+ Q  ME L   KF+    
Sbjct: 494 GDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTM 553

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
           L+ F +     +  I  A D+ + +   G    +  Y  L+G L + G V  A  L   +
Sbjct: 554 LKYFCQ-----QGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSV 608

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +   + +   +++  IQ   +     EA     +++E    P V  Y  + +GLC  G
Sbjct: 609 QMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGG 666



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 158/377 (41%), Gaps = 58/377 (15%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEM-------------------LEIL 191
           N  +YN L   L + N   AA ++  ++ S+G + ++                   +E+ 
Sbjct: 371 NTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELF 430

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           E+M+   C PD F Y+ +I  L +ER L   L + +EM+      +V+ Y TLI GLCK 
Sbjct: 431 EEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKN 490

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
            RV    ++F +M+  G+      Y  LI GL    +V +A  L+  ++  G + D   Y
Sbjct: 491 NRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTY 550

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
            +++   C+     +A  + +    +   PD  T   L+    + GR+D   KLL  ++ 
Sbjct: 551 TTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQM 610

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKK 430
                                              KG    P  YN ++ AL +    K+
Sbjct: 611 -----------------------------------KGMVLTPQAYNPVIQALCKRKRTKE 635

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
           A+ LF +M       + +++ I  +  C+   G I EA +   +++E   +P   ++  L
Sbjct: 636 AMRLFREMMEKGDPPDVITYKIVFRGLCN-GGGPIQEAVDFTVEMLEKGILPEFPSFGFL 694

Query: 489 TKGLCKIGEIDAAMMLV 505
            +GLC +   D  + L+
Sbjct: 695 AEGLCSLSMEDTLIQLI 711


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 192/437 (43%), Gaps = 35/437 (8%)

Query: 200 KPDVFAYTAMIRVLAAE-RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           + D  A+T ++R L A+ R  DA   V   M +     DV +Y TL+ GLC   +     
Sbjct: 45  RADAVAFTPLLRTLCAKKRTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAA 104

Query: 259 ELFREMKENGILI--DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
           EL   M E+G     D   Y  +I G   EG VGKA  L   ++D G   ++   NS+I 
Sbjct: 105 ELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVID 164

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK----- 371
           GLC+V+  DKA  + +  + + + P+ +T N L+      G+     ++L +M +     
Sbjct: 165 GLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRP 224

Query: 372 --LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVK 429
             + +++  D      F     E     +    +     Y S+       G L+E+  VK
Sbjct: 225 NVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVK 284

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
             +   G      +  N  +FSI I  + + G + EA     K+ ++  +P +  Y  + 
Sbjct: 285 DLMVQNG------MRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVI 338

Query: 490 KGLCKIGEIDAAM----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
            GLCKIG +D AM     ++ D L      P    +   I      G+ EK  E+  EM 
Sbjct: 339 DGLCKIGRLDDAMSRFCQMIDDGLS-----PNIITFTTLIHGFSMYGKWEKAEELFYEMM 393

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL-------- 597
             G PP+  I +A+I  + K G + EA+K+F +L  R    + N + Y+ ++        
Sbjct: 394 DRGIPPDVTIFTAMIDRLFKEGKVTEAQKLF-DLMPRA-GAKPNVVSYNTMIHGYFIAGE 451

Query: 598 IEHMKKKTADLVLSGLK 614
           +  + K   D++L GLK
Sbjct: 452 VGEVMKLLDDMLLIGLK 468



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 155/362 (42%), Gaps = 30/362 (8%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +L++M      P+   Y ++I    +       +R+ +EM +D    +V+ Y  LI  LC
Sbjct: 178 VLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLC 237

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K G      E+F  M ++G   D   YG L+ G   EG + +  ++   +V +G R++  
Sbjct: 238 KSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHH 297

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            ++  I   C+  + D+A   F    Q    PD  T   ++    ++GR+D+      QM
Sbjct: 298 TFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQM 357

Query: 370 --EKLKFSVAADLEKFFEF-LVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEI 425
             + L  ++         F + GK E+   A ++F E+  +G    V I+  ++  L + 
Sbjct: 358 IDDGLSPNIITFTTLIHGFSMYGKWEK---AEELFYEMMDRGIPPDVTIFTAMIDRLFKE 414

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G+V +A  LF  M     + N +S++  I  +  +G++ E  +  + ++ +   P+   +
Sbjct: 415 GKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTF 474

Query: 486 NCLTKGLCKIG---EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
           N L  G+  +G   ++D    L+  C                    C  G  E I+ +  
Sbjct: 475 NTLLDGMVSMGLKPDVDTCKTLIDSC--------------------CEDGRIEDILTLFR 514

Query: 543 EM 544
           EM
Sbjct: 515 EM 516



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 171/387 (44%), Gaps = 9/387 (2%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           AE++ ++ +   N C PDV +Y+ +I     E ++     ++ +M    +  +V+   ++
Sbjct: 104 AELIHMMAEDGDN-CPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSV 162

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLCK   + +   + ++M +  I+ +   Y  LI G +  G+  +A  +LK++   G 
Sbjct: 163 IDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQ 222

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG---RMDN 361
           R ++  YN +I  LC+     +A ++F   +Q    PD +T   LL   A  G    M+N
Sbjct: 223 RPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNN 282

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMG 420
              L+ Q           +E +     G+ +   +    F +++  G+   +  Y  ++ 
Sbjct: 283 VKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLT---FIKMQQLGFMPDIVTYTTVID 339

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L +IG +  A+  F +M    L  N ++F+  I      G   +A E   ++++    P
Sbjct: 340 GLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPP 399

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  +  +   L K G++  A  L  D +    + P    Y   I     +GE  +++++
Sbjct: 400 DVTIFTAMIDRLFKEGKVTEAQKLF-DLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKL 458

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHG 567
           L++M   G  P  V  + ++ GM   G
Sbjct: 459 LDDMLLIGLKPTAVTFNTLLDGMVSMG 485



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 19/207 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E      KM++    PD+  YT +I  L     LD  +  + +M  D +  +++ +
Sbjct: 310 GRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITF 369

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G    G+  +  ELF EM + GI  D  I+  +I+ L  EGKV +A  L   +  
Sbjct: 370 TTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPR 429

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFE-----------VT--------VQDDLAPD 342
           +G + ++  YN++I G     +  +  KL +           VT        V   L PD
Sbjct: 430 AGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKPD 489

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQM 369
             T   L+  C E GR+++   L  +M
Sbjct: 490 VDTCKTLIDSCCEDGRIEDILTLFREM 516



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 121/258 (46%), Gaps = 9/258 (3%)

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMM 396
           +APD +T   L+ CC + G ++  F  L Q+  +K  + AD   F   L  +  ++R   
Sbjct: 9   VAPDIATFGILISCCCDAGCLNLGFAALGQI--IKTGLRADAVAFTPLLRTLCAKKRTSD 66

Query: 397 ALD-VFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR--GLNLEVNSLSFSI 452
           A++ V   +   G +  V  Y+ L+  L    + ++A  L   M   G N   + +S+S 
Sbjct: 67  AMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYST 126

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
            I    + GD+ +A     K+++    P+V   N +  GLCK+  +D A  +++  +   
Sbjct: 127 VIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEH 186

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              P    Y   I     SG+  + + +L EM+++G  PN V  + +I  +CK G   EA
Sbjct: 187 IM-PNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEA 245

Query: 573 RKVFTNLRERKLLTEANT 590
           R++F ++ +     +A T
Sbjct: 246 REIFNSMIQSGPKPDATT 263



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 19/244 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELM-------------------DSQGRIA 185
           + G + N  +YN L  CL ++     A ++   M                    ++G + 
Sbjct: 219 RDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLV 278

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           EM  + + M +N  + +   ++  I        LD     + +M++     D++ Y T+I
Sbjct: 279 EMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVI 338

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLCK GR+      F +M ++G+  +   +  LI G    GK  KA +L  +++D G  
Sbjct: 339 DGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIP 398

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+ I+ ++I  L +  +  +A KLF++  +    P+  + N ++      G +    KL
Sbjct: 399 PDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKL 458

Query: 366 LAQM 369
           L  M
Sbjct: 459 LDDM 462



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 75/367 (20%), Positives = 146/367 (39%), Gaps = 46/367 (12%)

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD------------------------ 307
           D A +G+LI      G +      L  ++ +G RAD                        
Sbjct: 12  DIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKKRTSDAMNIV 71

Query: 308 ------LGI------YNSIIGGLCRVKQFDKAYKLFEVTVQ--DDLAPDFSTVNPLLVCC 353
                 LG       Y++++ GLC  K+ ++A +L  +  +  D+  PD  + + ++   
Sbjct: 72  LRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVIHGF 131

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YS 410
            + G +   + L  +M  L   +  ++      + G  K + +  A  V +++  +    
Sbjct: 132 FKEGDVGKAYTLFCKM--LDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMP 189

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           +   YN L+   L  G+  +A+ +  +M       N +++++ I C  +SG   EA E  
Sbjct: 190 NCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIF 249

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
           N +I+    P    Y  L  G    G +   M  V+D +           +++ I   C+
Sbjct: 250 NSMIQSGPKPDATTYGSLLHGYATEGNL-VEMNNVKDLMVQNGMRSNHHTFSIEIYAYCK 308

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            G  ++      +M Q G  P+ V  + +I G+CK G L++A   F  + +  L    N 
Sbjct: 309 CGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGL--SPNI 366

Query: 591 IVYDEIL 597
           I +  ++
Sbjct: 367 ITFTTLI 373


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 181/407 (44%), Gaps = 6/407 (1%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +  +G+I +   + EKM       +   YT++IR        +   ++++EM +     D
Sbjct: 465 LGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPD 524

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           +    T +  + K G V +G  +F +MK  G L D   Y +LI GL   G+  +  ++ +
Sbjct: 525 LTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQ 584

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            +   G+  D   YN+++ GLC+  + DKAY++ E      + P  +T   ++   A++ 
Sbjct: 585 AMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKID 644

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYN 416
           R+D  + L  + +     +   L        GK  RI  A  + EE+  KG + +V  +N
Sbjct: 645 RLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWN 704

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKII 474
            LM AL++  E+ +AL  F  M+ +    N+ ++SI I   C V+  +  +A     ++ 
Sbjct: 705 SLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYN--KAFVFWQEMQ 762

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           +   +P+V  Y  +  GL K+G I  A  L      N    P    +   I  +  +   
Sbjct: 763 KQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTN-GGIPDSASFNALIEGMSNANRP 821

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            +  +V  E    GC  N   C +++  + K   LE+A  V   L E
Sbjct: 822 MEAYQVFEETRLRGCRLNVKTCISLLDALNKTECLEQAAIVGAVLSE 868



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 126/526 (23%), Positives = 214/526 (40%), Gaps = 33/526 (6%)

Query: 103 WGPQVVTELSKLRRVTP----DLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL 158
           W P +   +S      P    D+V  VL+   NP+LA+ FF  A           +YNA+
Sbjct: 55  WTPDLAGAVSSTLSSAPAPAHDVVVYVLRSLKNPSLAAPFFLLASASSSQPLPPDAYNAV 114

Query: 159 AYCLSRNNLFRAADQVPELMDSQG-------------------RIAEMLEILEKMRRNLC 199
              LS +    A ++V E M   G                   R+ +   ++  MR    
Sbjct: 115 LPFLSHD--LAALEKVLEEMSHLGYGLPNPACAALVATLVRSRRLEDAFRVIGAMRHLKF 172

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +P   AYT +I  LA  R  +  L +  +M+    E  V  + TL+  L + G++     
Sbjct: 173 RPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALA 232

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L  E+K + +  D  +Y V I+     G V  A     +L   G R D   Y S++  LC
Sbjct: 233 LVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLC 292

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +  +  +A +LF     +   P     N +++      R D+ +KLL ++ +        
Sbjct: 293 KAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRER--GCIPS 350

Query: 380 LEKFFEFL--VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGK 437
           +  F   L  +GK+ ++  AL +F+ +K     ++  YNI++  L   G V +A  +  +
Sbjct: 351 VVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDE 410

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M    L  N LS +I +    ++  + EA        E    P+   Y  L  GL K G+
Sbjct: 411 MELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGK 470

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           ID A  L    L +         Y   I +    G  E   ++  EM + G  P+  + +
Sbjct: 471 IDDAYRLFEKML-DAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLN 529

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
             +  + K G +E+ R +F +++    L +  +     ILI  + K
Sbjct: 530 TYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSY---SILIHGLTK 572



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 135/287 (47%), Gaps = 25/287 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSR-------NNLFRAADQVPELMDSQ------------GRI 184
           K  G+  +  SY+ L + L++       +N+F+A  Q    +D++            G++
Sbjct: 552 KSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKV 611

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            +  E+LE+M+     P V  Y +++  LA    LD    ++EE K   +E +V+ Y +L
Sbjct: 612 DKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSL 671

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G  K GR+   + +  EM + G+  +   +  L++ LV   ++ +A    + + +   
Sbjct: 672 IDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKC 731

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             +   Y+ +I GLCRV++++KA+  ++   +  L P+  T   ++   A++G + + + 
Sbjct: 732 SPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYS 791

Query: 365 LLAQMEKLKFSVAADLEKFFEFLV---GKEERIMMALDVFEELKGKG 408
           L    E+ K +        F  L+       R M A  VFEE + +G
Sbjct: 792 LF---ERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRG 835



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 3/154 (1%)

Query: 177 LMDSQGRIAEMLEIL---EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD+  +  E+ E L   + M+   C P+ + Y+ +I  L   +  +     W+EM+K  
Sbjct: 706 LMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQG 765

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  +V+ Y T+I GL K G +   + LF   K NG + D A +  LIEG+    +  +A 
Sbjct: 766 LIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAY 825

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
            + ++    G R ++    S++  L + +  ++A
Sbjct: 826 QVFEETRLRGCRLNVKTCISLLDALNKTECLEQA 859


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 117/475 (24%), Positives = 224/475 (47%), Gaps = 26/475 (5%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           SY  +   LS N +  A  +  + +    +IAE   I ++M  +   P+V+ Y  +IR  
Sbjct: 160 SYGFMPGVLSYNAILDAVIRTKQSV----KIAE--GIFKEMVESGVSPNVYTYNILIRGF 213

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
               NL+  L  + EM+++    +V+ Y T+I   CK  ++    +L R M   G+  + 
Sbjct: 214 CTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNL 273

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             Y V+I GL  EG++ +  ++L+++    Y  D   +N++I G C V  F +A  L   
Sbjct: 274 ISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAE 333

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER 393
            V++ L+P+  T   L+    + G ++   + L QM      +  +   +   + G  ++
Sbjct: 334 MVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR--GLHPNGRTYTTLIDGFSQQ 391

Query: 394 --IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSL 448
             +  A  + +E+   G++ ++  YN L+     +G ++ A  L  +M  RG   +V  +
Sbjct: 392 GFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDV--V 449

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           S+S  I     + ++ +A +   +++     P VA Y+ L +GLCK   +     L ++ 
Sbjct: 450 SYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEM 509

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
           L ++   P E  Y   I   C  G+ +K + + +EM Q+G  P+ V  + +I+G  K   
Sbjct: 510 L-SLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSR 568

Query: 569 LEEARKVFTNLRERKLLTEA---NTIVYDEIL--IEHMKKKTADLVLSGLKFFGL 618
            +EA+++       KLL E    N I Y+ ++    +++ K+A  ++ G    GL
Sbjct: 569 TKEAKRLLL-----KLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGL 618



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 106/470 (22%), Positives = 189/470 (40%), Gaps = 82/470 (17%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-------------------GRIAE 186
           KG   N  SYN +   L R    +   ++ E M  +                   G   +
Sbjct: 267 KGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQ 326

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
            L +  +M +N   P+V  YT +I  +    NL+  +   ++M+   +  +   Y TLI 
Sbjct: 327 ALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLID 386

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           G  + G + + +++ +EM ENG       Y  LI G    G++  A  LL+++++ G+  
Sbjct: 387 GFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIP 446

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFK 364
           D+  Y++II G CR ++ +KA++L    V   ++PD +T + L+  +C            
Sbjct: 447 DVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLC------------ 494

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALL 423
                                    K+ R+    D+F+E+   G     + Y  L+ A  
Sbjct: 495 -------------------------KQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYC 529

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
             G++ KAL L  +M       + +++++ I    +     EA     K++    VP+  
Sbjct: 530 IEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEI 589

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH-VCRSGEAEKIIEVLN 542
            YN                 L+ +C         EFK AL ++   C  G   +   VL 
Sbjct: 590 TYNT----------------LIDNC------NNLEFKSALALMKGFCMKGLMNEADRVLE 627

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
            M Q+G   NE + + II G  K G +E+A  ++  +        + TI+
Sbjct: 628 SMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIM 677


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 182/424 (42%), Gaps = 58/424 (13%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+++ L +LE M+   CKP+V+ Y A+++    E  +   + +  +M+   V  D + 
Sbjct: 159 EGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVT 218

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G C  G +     L R M+ +G++ D+  Y  LI  L  +G+  +AC L   L 
Sbjct: 219 YNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLE 278

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + +   +NS+I GLC+  + D A+K  E  V     PD  T +  +         +
Sbjct: 279 TRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFI---------E 329

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
           +  K+    E L F                         + E L+     S   Y I++ 
Sbjct: 330 HLCKMKGSQEGLSF-------------------------IGEMLQKDVKPSTVNYTIVIH 364

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ-- 478
            LL+          +G+M       + ++++ +++ +   G + EA    N ++EMS+  
Sbjct: 365 KLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEA---ENVLMEMSKNG 421

Query: 479 -VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR------- 530
                 AYN L  G   IG+ D A+ +++  + +VAS P +F Y + + H+ R       
Sbjct: 422 VTVDTMAYNTLMDGHASIGQTDHAVSILKQ-MTSVASVPNQFTYFILLRHLVRMRLVEDV 480

Query: 531 ----------SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
                     + E   +  + + M +    PN    S+I+ G  + G  EEA  + + ++
Sbjct: 481 LPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMK 540

Query: 581 ERKL 584
           E  +
Sbjct: 541 EDSI 544



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 178/417 (42%), Gaps = 43/417 (10%)

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M R+  +PD + + ++I        +D    ++++M       DV++Y TLI GLC+ GR
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           +    ELF EM +     D  +Y  L++GL    +  +   +L+ + + G+R     Y +
Sbjct: 61  IDEAVELFGEMDQP----DMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAA 116

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           ++   CR ++  +A ++ +   +  LAP   T   ++    + GRM +            
Sbjct: 117 VVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSD------------ 164

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
                                  AL V E +K +G   +V  YN L+      G+V KA+
Sbjct: 165 -----------------------ALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAM 201

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            L  KMR   +  +++++++ I+     G I  A      +     +     YN L   L
Sbjct: 202 TLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINAL 261

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           CK G  D A  L  D L      P    +   I  +C+SG+A+   + L +M   GC P+
Sbjct: 262 CKDGRTDQACSLF-DSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPD 320

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLV 609
               S+ I  +CK    +E       + ++ +  + +T+ Y  ++ + +K++   LV
Sbjct: 321 TYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDV--KPSTVNYTIVIHKLLKERNYGLV 375



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 104/490 (21%), Positives = 190/490 (38%), Gaps = 62/490 (12%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAA----DQVP---------------ELMDSQGRIA 185
           + G++ +  ++N+L     R N    A    D++P               E +   GRI 
Sbjct: 3   RSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRID 62

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLA-AERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           E +E+  +M     +PD+  Y A+++ L  AER  +  L +   MK+        AY  +
Sbjct: 63  EAVELFGEMD----QPDMHMYAALVKGLCNAERGEEGLLML-RRMKELGWRPSTRAYAAV 117

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           +   C+  +     E+ +EM E G+         +I     EG++  A  +L+ +   G 
Sbjct: 118 VDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGC 177

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           + ++  YN+++ G C   +  KA  L        + PD  T N L+      G +++ F+
Sbjct: 178 KPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFR 237

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE 424
           LL  ME                               + L    Y+    YN L+ AL +
Sbjct: 238 LLRLMEG------------------------------DGLIADQYT----YNALINALCK 263

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G   +A  LF  +    ++ N+++F+  I    +SG    A +   K++     P    
Sbjct: 264 DGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYT 323

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y+   + LCK+      +  + + L      P+   Y + I  + +      +     EM
Sbjct: 324 YSSFIEHLCKMKGSQEGLSFIGEMLQKDVK-PSTVNYTIVIHKLLKERNYGLVARTWGEM 382

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
              GC P+ V  +  +   C  G L EA  V   + +  +    +T+ Y+ ++  H    
Sbjct: 383 VSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGV--TVDTMAYNTLMDGHASIG 440

Query: 605 TADLVLSGLK 614
             D  +S LK
Sbjct: 441 QTDHAVSILK 450



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 148/337 (43%), Gaps = 28/337 (8%)

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +V SG+R D   +NS+I G CR  Q D A  LF+       A D  +   L+    E GR
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNI 417
           +D   +L  +M++    + A L K        EE ++M       +K  G+  S   Y  
Sbjct: 61  IDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLM----LRRMKELGWRPSTRAYAA 116

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++       + K+A  +  +M    L    ++ +  I  + + G + +A     +++E+ 
Sbjct: 117 VVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDAL----RVLELM 172

Query: 478 QV----PSVAAYNCLTKGLCKIGEIDAAMMLV---RDCLGNVASGPTEFKYALTILHVCR 530
           ++    P+V  YN L +G C  G++  AM L+   R C  N    P    Y L I   C 
Sbjct: 173 KLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVN----PDAVTYNLLIRGQCI 228

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            G  E    +L  M  +G   ++   +A+I+ +CK G  ++A  +F +L  R +  + N 
Sbjct: 229 DGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGI--KPNA 286

Query: 591 IVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
           + ++ ++    K   AD+     KF     K+ + GC
Sbjct: 287 VTFNSLINGLCKSGKADI---AWKFL---EKMVSAGC 317



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 20/201 (9%)

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
           +S+N +         LMD    I +    + IL++M      P+ F Y  ++R L   R 
Sbjct: 417 MSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRL 476

Query: 219 LDACL-----RVWEE------------MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           ++  L      VW+             MKK+    +   Y +++ G  + GR      L 
Sbjct: 477 VEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLV 536

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             MKE+ I ++  IY  L+       +   A  L+  ++  G+   L  Y  ++ GL   
Sbjct: 537 SLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICE 596

Query: 322 KQFDKAYKLFEVTVQDDLAPD 342
            Q DKA ++F  +   D +PD
Sbjct: 597 GQTDKAKEIFMNSRWKDYSPD 617



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/162 (19%), Positives = 71/162 (43%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + ++  + + M++N   P+   Y++++   + +   +    +   MK+D +  +   Y  
Sbjct: 494 LTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTA 553

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+   CK  R +    L   M ++G +     Y  L+ GL+ EG+  KA ++  +     
Sbjct: 554 LVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKD 613

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           Y  D  ++  II GL +    D + ++  +  + +  P   T
Sbjct: 614 YSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQT 655


>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
          Length = 629

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 186/408 (45%), Gaps = 19/408 (4%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKK-DLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           DVFA+ +++  LA  R++    R++  M+    V  DV+ Y  L+ GLCK GRV     +
Sbjct: 135 DVFAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRV 194

Query: 261 FREMKENGILI--DRAIYGVLIEGLVGEGKVGKACDLLKDLVDS--GYRADLGIYNSIIG 316
              M    + I  D      +++GL   G+V +A   ++  + S  G   +   YN +I 
Sbjct: 195 LDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLID 254

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
             CRV     AY+L E    + +  +  T+N ++      GR     +   + ++  +  
Sbjct: 255 AFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFRE-KRTVWPE 313

Query: 377 AADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKAL 432
                  +  LVG       + MA+++F E   +G+S   I Y  ++  L + G ++ A 
Sbjct: 314 GKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDAC 373

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            +   M+    ++++ +++I I        + EA E   ++ E+   P V  YN L  G 
Sbjct: 374 SMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGS 433

Query: 493 CKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
           CK G+  A    V + LG +      P+   +   +   C+ G+ ++ + +L  M + G 
Sbjct: 434 CKAGDFAA----VDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGI 489

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            PN VI + +I  +CK G ++ A ++F  ++E+ +   AN   ++ +L
Sbjct: 490 HPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSV--PANVTTFNALL 535



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 112/493 (22%), Positives = 219/493 (44%), Gaps = 36/493 (7%)

Query: 121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS 180
           +++++L   ++P  A++F   +        +  ++N++   L+R         VP +   
Sbjct: 105 ILSKLLARFSSPEPAARFLAASLAAGAPAPDVFAFNSILAALAR------VRDVPGM--- 155

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM-KKDL-VEADV 238
             RI  +++    +R     PDV  Y  ++  L     +   LRV + M ++DL +  DV
Sbjct: 156 -ARIYALMQGCASVR-----PDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDV 209

Query: 239 MAYVTLIMGLCKGGRVVRGHELF--REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           +   T++ GLCK GRV         R    +G   +   Y  LI+     G +  A +L+
Sbjct: 210 VTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELV 269

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF--EVTVQDDL---APDFSTVNPLLV 351
           + + + G   ++   N+I+GGLCR  +   A + F  + TV  +    A  +ST+   L+
Sbjct: 270 EKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALL 329

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGY 409
               +G     F      EK+    + D   +F  + G  +  R+  A  +   +K  G+
Sbjct: 330 HTNNVGMAMELFH-----EKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGF 384

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
                 YNIL+        + +A  L  +M+ + +  +  +++  +    ++GD     E
Sbjct: 385 KLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDE 444

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
              K+I+    PSV  +  L  G CK+G+ID A+ ++R  +      P    Y   I  +
Sbjct: 445 LLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRS-MDESGIHPNNVIYNTLIDFL 503

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C+ G+ +  IE+ +EM ++  P N    +A++ G+      E+A ++   +RE +   + 
Sbjct: 504 CKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDY 563

Query: 589 NTIVYDEILIEHM 601
            T+   ++L+E +
Sbjct: 564 VTV---DVLMEWL 573



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 134/302 (44%), Gaps = 26/302 (8%)

Query: 96  FRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASY 155
           FR+ +  W P+      K   VT   +   L   NN  +A + FH   ++    H   S 
Sbjct: 304 FREKRTVW-PE-----GKGNAVTYSTLVGALLHTNNVGMAMELFH---EKMSEGH---SP 351

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           +A+ Y    + L +A           GR+ +   +   M+    K D  AY  +I     
Sbjct: 352 DAIMYFTMISGLTQA-----------GRLEDACSMASSMKEAGFKLDTKAYNILIAGFCR 400

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
           ++ L     + +EMK+  +  DV  Y TL+ G CK G      EL  +M ++G       
Sbjct: 401 KKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVIT 460

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           +G L+ G    GK+ +A  +L+ + +SG   +  IYN++I  LC+    D A +LF+   
Sbjct: 461 FGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMK 520

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-EKLKFSVAADLEKFFEFL--VGKEE 392
           +  +  + +T N LL    +    +  F+L+ QM E+  F     ++   E+L  +G+ +
Sbjct: 521 EKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWLPVIGETD 580

Query: 393 RI 394
           R+
Sbjct: 581 RL 582


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 195/436 (44%), Gaps = 9/436 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +     + ++M  +  KP++  Y  ++  L     +D    + +EM    +  D   Y
Sbjct: 243 GDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTY 302

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L  GL + G       LF E  + G+++      +L+ GL  +GKV KA  +L+ LV 
Sbjct: 303 SILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVH 362

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G      IYN++I G C+V+    A+ +FE      + PD  T N L+    ++  +  
Sbjct: 363 TGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTK 422

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGY-SSVPIYNIL 418
              L+ +ME  K  V   +E F   +   G   ++     V  +++ KG  S V  +  +
Sbjct: 423 AEDLVMEME--KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSV 480

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + A  + G++ +A+ +   M   ++  N+  ++  I  ++ESGD  +A     K+     
Sbjct: 481 VKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGV 540

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
             S+  YN L KGLC+  +ID A  L+   L N    P    Y   I   C  G+ +K +
Sbjct: 541 SASIVTYNLLLKGLCRSSQIDEAEELIY-TLRNQGLRPDVVSYNTIISACCNKGDTDKAL 599

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           E+L EM + G  P       ++S +   G + +   ++  +  + +  E ++ +Y  I++
Sbjct: 600 ELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNV--EPSSSIYG-IMV 656

Query: 599 EHMKKKTADLVLSGLK 614
           +   +   D  ++ LK
Sbjct: 657 DAYVRCENDSKVASLK 672



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/429 (21%), Positives = 175/429 (40%), Gaps = 44/429 (10%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD--LVEADVMAYVTLIMGLCKGGRVVRG 257
           +PD FA+  +++   A  +LD  L +   M +       D  +Y  +I GL + G+    
Sbjct: 154 RPDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDA 213

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
            ++F EM + G++ +   Y  +I+G V  G +     L   ++  G + ++  YN ++ G
Sbjct: 214 LKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSG 273

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
           LCR  + D+   L +      + PD  T + L       G       L A+  K    + 
Sbjct: 274 LCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLG 333

Query: 378 ADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFG 436
           A         + K+ ++  A  V E L   G   +  IYN L+    ++ +++ A  +F 
Sbjct: 334 AYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFE 393

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M+  ++                                    P    YN L  GLCK+ 
Sbjct: 394 QMKSRHIR-----------------------------------PDHITYNALINGLCKLE 418

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            +  A  LV + +      P+   +   I     +G+ EK   VL++M Q+G   + +  
Sbjct: 419 MVTKAEDLVME-MEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISF 477

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL---IEHMKKKTADLVLSGL 613
            +++   CK+G + EA  +  ++  + +    N  VY+ I+   IE    + A L++  +
Sbjct: 478 GSVVKAFCKNGKIPEAVAILDDMIYKDV--APNAQVYNSIIDAYIESGDTEQAFLLVEKM 535

Query: 614 KFFGLESKL 622
           K  G+ + +
Sbjct: 536 KNSGVSASI 544



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 16/164 (9%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K  G   +  +YN L   L R++                +I E  E++  +R    +PDV
Sbjct: 536 KNSGVSASIVTYNLLLKGLCRSS----------------QIDEAEELIYTLRNQGLRPDV 579

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            +Y  +I     + + D  L + +EM K  +   +  Y TL+  L   GRV     L+++
Sbjct: 580 VSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQ 639

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           M    +    +IYG++++  V      K   L K++ + G   D
Sbjct: 640 MLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 683



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 84/183 (45%), Gaps = 5/183 (2%)

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI-- 473
           N+L+ +LL +G        FG +       ++ +++  +Q  V +GD+  A     ++  
Sbjct: 126 NLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAMVRRMGR 185

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            E +  P   +YN +  GL + G+   A+  V D + ++   P    Y   I    + G+
Sbjct: 186 SEGAPPPDAFSYNVVIAGLWRSGKGSDALK-VFDEMVDMGVVPNWITYNTMIDGHVKGGD 244

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT--I 591
            E    + ++M  +G  PN V  + ++SG+C+ G ++E R +   +    +  +  T  I
Sbjct: 245 LEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSI 304

Query: 592 VYD 594
           ++D
Sbjct: 305 LFD 307



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 99/262 (37%), Gaps = 38/262 (14%)

Query: 107 VVTELSKLRRVTP--DLVAEVLKVENNPTLAS-----KFFHWAGK------------QKG 147
           ++  L KL  VT   DLV E+ K   +P++ +       +  AG+            QKG
Sbjct: 410 LINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKG 469

Query: 148 YKHNFASYNALAYCLSRNNLFRAA----------DQVP------ELMDS---QGRIAEML 188
            K +  S+ ++     +N     A          D  P       ++D+    G   +  
Sbjct: 470 IKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAF 529

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
            ++EKM+ +     +  Y  +++ L     +D    +   ++   +  DV++Y T+I   
Sbjct: 530 LLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISAC 589

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C  G   +  EL +EM + GI      Y  L+  L   G+V     L + ++        
Sbjct: 590 CNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSS 649

Query: 309 GIYNSIIGGLCRVKQFDKAYKL 330
            IY  ++    R +   K   L
Sbjct: 650 SIYGIMVDAYVRCENDSKVASL 671


>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
 gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 97/434 (22%), Positives = 197/434 (45%), Gaps = 37/434 (8%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++     +L+ M+     P+V  YT  I      + ++    ++E M ++ V  DV+  
Sbjct: 218 GQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTL 277

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLC+ GR    + LFREM + G   +   Y  LI+ L   G+  +   LL ++V 
Sbjct: 278 SALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVS 337

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   DL  Y +++  L +  + D+        + D+L+P+  T   L+    +   +D 
Sbjct: 338 RGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDE 397

Query: 362 FFKLLAQMEK-------LKFSVAAD-------LEKFFEFLVGKEERIM------------ 395
             ++L +ME+       + FS   +       L+K  E+    +ER +            
Sbjct: 398 AEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLID 457

Query: 396 ---------MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
                     AL+V+ ++  +G   +  I + L+  L + G++++A+ LF    G  L +
Sbjct: 458 GFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSL 517

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           + ++++  I    ++GD+  A +   ++++ + +P    YN     LC +G+   A   +
Sbjct: 518 DHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFL 577

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
            + + N+   P +  Y   I+  CR GE  K +++L+EM      PN +  + +++G+  
Sbjct: 578 TE-MRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFG 636

Query: 566 HGTLEEARKVFTNL 579
            G +E+A+ +   +
Sbjct: 637 TGAVEKAKYLLNEM 650



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 108/469 (23%), Positives = 186/469 (39%), Gaps = 46/469 (9%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLC---KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD  G+  +  E+ + +R  L     P+   YT +I  L    N+D   +V  EM++  
Sbjct: 350 LMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKS 409

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE------------ 281
           +  +V+ + ++I G  K G + +  E  R MKE GI  +   YG LI+            
Sbjct: 410 ISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAAL 469

Query: 282 -----------------------GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
                                  GL   GK+ +A  L KD   SG   D   Y ++I GL
Sbjct: 470 EVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGL 529

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
            +      A+K  +  +  ++ PD    N  + C   +G+       L +M  +   +  
Sbjct: 530 FKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNM--GLKP 587

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
           D   +   +V   ++     AL +  E+K      ++  YN L+  L   G V+KA YL 
Sbjct: 588 DQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLL 647

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M       +SL+    +Q   +S  +    + H  ++       +  YN L + LC  
Sbjct: 648 NEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYH 707

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G    A +++ + LG+    P    +   IL  C+S   +       +M  +   PN   
Sbjct: 708 GMTRKATVVLEEMLGS-GIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIAT 766

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
            + ++ G+   G + EA  V   + +  L  E N + YD +   H K+ 
Sbjct: 767 FNTLLGGLESVGRIGEAGTVLIEMEKSGL--EPNNLTYDILATGHGKQS 813



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 101/441 (22%), Positives = 188/441 (42%), Gaps = 43/441 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + +  E    M+     P+V  Y  +I      +  DA L V+ +M  + V+ +   
Sbjct: 427 RGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFI 486

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             +L+ GL + G++     LF++   +G+ +D   Y  LI+GL   G +  A    ++L+
Sbjct: 487 VDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELM 546

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D     D  +YN  I  LC + +F +A           L PD ST N ++V     G   
Sbjct: 547 DRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETA 606

Query: 361 NFFKLLAQM-------------------------EKLKFSVAADLEKFFEFLVGKEERIM 395
              KLL +M                         EK K+ +   +   F        R++
Sbjct: 607 KALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVL 666

Query: 396 MA----------LDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
            A          LD+ E +   G ++ + +YN L+  L   G  +KA  +  +M G  + 
Sbjct: 667 QACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIA 726

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI-DAAMM 503
            ++++F+  I  H +S  +  A   + +++  +  P++A +N L  GL  +G I +A  +
Sbjct: 727 PDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTV 786

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI--IEVLNEMTQEGCPPNEVICSAIIS 561
           L+   +      P    Y   IL      ++ K+  + +  EM  +G  P     +A+IS
Sbjct: 787 LIE--MEKSGLEPNNLTY--DILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALIS 842

Query: 562 GMCKHGTLEEARKVFTNLRER 582
              K G + +A+++F ++++R
Sbjct: 843 DFTKAGMMTQAKELFKDMQKR 863



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 113/455 (24%), Positives = 191/455 (41%), Gaps = 29/455 (6%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G   +  + N L   L RN      D    L D  G I  +              DV 
Sbjct: 128 KRGVPFDGVTVNTLLAGLCRNG---QVDAAAALADRGGGIHAL--------------DVI 170

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            +  +I       +  A L V + M    +  DV+ Y TL+ G C+ G+V     +   M
Sbjct: 171 GWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMM 230

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           KE G+  + A Y   I        V +A DL + +V +G   D+   ++++ GLCR  +F
Sbjct: 231 KEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRF 290

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +AY LF    +   AP+  T   L+   A+ GR      LL +M  +   V  DL  + 
Sbjct: 291 SEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEM--VSRGVVMDLVTYT 348

Query: 385 EFL--VGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGL 441
             +  +GK+ +     D          S   + Y +L+ AL +   V +A  +  +M   
Sbjct: 349 ALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEK 408

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
           ++  N ++FS  I   V+ G + +A E    + E    P+V  Y  L  G  K    DAA
Sbjct: 409 SISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAA 468

Query: 502 MMLVRDCLGNVASGPTEFKYALTIL--HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           + +  D L     G    K+ +  L   + ++G+ E+ + +  + +  G   + V  + +
Sbjct: 469 LEVYHDML---CEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTL 525

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           I G+ K G +  A K    L +R +L +A  +VY+
Sbjct: 526 IDGLFKAGDMPTAFKFGQELMDRNMLPDA--VVYN 558



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 103/447 (23%), Positives = 180/447 (40%), Gaps = 49/447 (10%)

Query: 168 FRAAD--QVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV 225
           FR AD   +  L+ S  R+  +   +  +R +  +P   AY  ++  L+   +  A L  
Sbjct: 68  FRPADPASLNALLYSHCRLRLLRPAIALLRSS--RPTTVAYNILLAALSDHAHAPAVL-- 123

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI-LIDRAIYGVLIEGLV 284
             EM K  V  D +   TL+ GLC+ G+V     L    +  GI  +D   +  LI G  
Sbjct: 124 -AEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALAD--RGGGIHALDVIGWNTLIAGYC 180

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
             G    A  +   +   G   D+  YN+++ G CR  Q D A  + ++  +  + P+ +
Sbjct: 181 RVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVA 240

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL 404
           T  P +V                               ++    G EE    A D++E +
Sbjct: 241 TYTPFIV-------------------------------YYCRTKGVEE----AFDLYEGM 265

Query: 405 KGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
              G    V   + L+  L   G   +A  LF +M  +    N +++   I    ++G  
Sbjct: 266 VRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRG 325

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
            E      +++    V  +  Y  L   L K G+ D     +R  L +  S P    Y +
Sbjct: 326 KELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLS-PNGVTYTV 384

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I  +C++   ++  +VL EM ++   PN V  S++I+G  K G L++A +    ++ER 
Sbjct: 385 LIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERG 444

Query: 584 LLTEANTIVYDEILIEHMKKKTADLVL 610
           +    N + Y  ++    K +  D  L
Sbjct: 445 I--NPNVVTYGTLIDGFFKFQGQDAAL 469


>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
          Length = 933

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 97/434 (22%), Positives = 197/434 (45%), Gaps = 37/434 (8%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++     +L+ M+     P+V  YT  I      + ++    ++E M ++ V  DV+  
Sbjct: 218 GQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTL 277

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLC+ GR    + LFREM + G   +   Y  LI+ L   G+  +   LL ++V 
Sbjct: 278 SALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVS 337

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   DL  Y +++  L +  + D+        + D+L+P+  T   L+    +   +D 
Sbjct: 338 RGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDE 397

Query: 362 FFKLLAQMEK-------LKFSVAAD-------LEKFFEFLVGKEERIM------------ 395
             ++L +ME+       + FS   +       L+K  E+    +ER +            
Sbjct: 398 AEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLID 457

Query: 396 ---------MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
                     AL+V+ ++  +G   +  I + L+  L + G++++A+ LF    G  L +
Sbjct: 458 GFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSL 517

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           + ++++  I    ++GD+  A +   ++++ + +P    YN     LC +G+   A   +
Sbjct: 518 DHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFL 577

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
            + + N+   P +  Y   I+  CR GE  K +++L+EM      PN +  + +++G+  
Sbjct: 578 TE-MRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFG 636

Query: 566 HGTLEEARKVFTNL 579
            G +E+A+ +   +
Sbjct: 637 TGAVEKAKYLLNEM 650



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 108/468 (23%), Positives = 186/468 (39%), Gaps = 46/468 (9%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLC---KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD  G+  +  E+ + +R  L     P+   YT +I  L    N+D   +V  EM++  
Sbjct: 350 LMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKS 409

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE------------ 281
           +  +V+ + ++I G  K G + +  E  R MKE GI  +   YG LI+            
Sbjct: 410 ISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAAL 469

Query: 282 -----------------------GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
                                  GL   GK+ +A  L KD   SG   D   Y ++I GL
Sbjct: 470 EVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGL 529

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
            +      A+K  +  +  ++ PD    N  + C   +G+       L +M  +   +  
Sbjct: 530 FKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNM--GLKP 587

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
           D   +   +V   ++     AL +  E+K      ++  YN L+  L   G V+KA YL 
Sbjct: 588 DQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLL 647

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M       +SL+    +Q   +S  +    + H  ++       +  YN L + LC  
Sbjct: 648 NEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYH 707

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G    A +++ + LG+    P    +   IL  C+S   +       +M  +   PN   
Sbjct: 708 GMTRKATVVLEEMLGS-GIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIAT 766

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
            + ++ G+   G + EA  V   + +  L  E N + YD +   H K+
Sbjct: 767 FNTLLGGLESVGRIGEAGTVLIEMEKSGL--EPNNLTYDILATGHGKQ 812



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 101/441 (22%), Positives = 188/441 (42%), Gaps = 43/441 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + +  E    M+     P+V  Y  +I      +  DA L V+ +M  + V+ +   
Sbjct: 427 RGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFI 486

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             +L+ GL + G++     LF++   +G+ +D   Y  LI+GL   G +  A    ++L+
Sbjct: 487 VDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELM 546

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D     D  +YN  I  LC + +F +A           L PD ST N ++V     G   
Sbjct: 547 DRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETA 606

Query: 361 NFFKLLAQM-------------------------EKLKFSVAADLEKFFEFLVGKEERIM 395
              KLL +M                         EK K+ +   +   F        R++
Sbjct: 607 KALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVL 666

Query: 396 MA----------LDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
            A          LD+ E +   G ++ + +YN L+  L   G  +KA  +  +M G  + 
Sbjct: 667 QACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIA 726

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI-DAAMM 503
            ++++F+  I  H +S  +  A   + +++  +  P++A +N L  GL  +G I +A  +
Sbjct: 727 PDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTV 786

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI--IEVLNEMTQEGCPPNEVICSAIIS 561
           L+   +      P    Y   IL      ++ K+  + +  EM  +G  P     +A+IS
Sbjct: 787 LIE--MEKSGLEPNNLTY--DILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALIS 842

Query: 562 GMCKHGTLEEARKVFTNLRER 582
              K G + +A+++F ++++R
Sbjct: 843 DFTKAGMMTQAKELFKDMQKR 863



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 169/379 (44%), Gaps = 12/379 (3%)

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280
           A L V + M    +  DV+ Y TL+ G C+ G+V     +   MKE G+  + A Y   I
Sbjct: 187 AALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFI 246

Query: 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
                   V +A DL + +V +G   D+   ++++ GLCR  +F +AY LF    +   A
Sbjct: 247 VYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAA 306

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMAL 398
           P+  T   L+   A+ GR      LL +M  +   V  DL  +   +  +GK+ +     
Sbjct: 307 PNHVTYCTLIDSLAKAGRGKELLSLLGEM--VSRGVVMDLVTYTALMDWLGKQGKTDEVK 364

Query: 399 DVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
           D          S   + Y +L+ AL +   V +A  +  +M   ++  N ++FS  I   
Sbjct: 365 DTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGF 424

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
           V+ G + +A E    + E    P+V  Y  L  G  K    DAA+ +  D L     G  
Sbjct: 425 VKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDML---CEGVK 481

Query: 518 EFKYALTIL--HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
             K+ +  L   + ++G+ E+ + +  + +  G   + V  + +I G+ K G +  A K 
Sbjct: 482 VNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKF 541

Query: 576 FTNLRERKLLTEANTIVYD 594
              L +R +L +A  +VY+
Sbjct: 542 GQELMDRNMLPDA--VVYN 558



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 106/503 (21%), Positives = 198/503 (39%), Gaps = 49/503 (9%)

Query: 113 KLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAAD 172
           K R + P++V          TL   FF + G+    +     ++ L   +  N      D
Sbjct: 441 KERGINPNVVTY-------GTLIDGFFKFQGQDAALE---VYHDMLCEGVKVNKFI--VD 488

Query: 173 QVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
            +   +   G+I E + + +    +    D   YT +I  L    ++    +  +E+   
Sbjct: 489 SLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDR 548

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            +  D + Y   I  LC  G+         EM+  G+  D++ Y  +I     +G+  KA
Sbjct: 549 NMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKA 608

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
             LL ++  S  + +L  YN+++ GL      +KA  L    V    +P   T   +L  
Sbjct: 609 LKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQA 668

Query: 353 CAEMGRMD------------------NFFKLLAQM---------------EKLKFSVAAD 379
           C++  R+D                    +  L Q+               E L   +A D
Sbjct: 669 CSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPD 728

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
              F   ++G  K   +  A   + ++  +  S ++  +N L+G L  +G + +A  +  
Sbjct: 729 TITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLI 788

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M    LE N+L++ I    H +  + +EA   + +++    VP V+ YN L     K G
Sbjct: 789 EMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAG 848

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            +  A  L +D +      PT   Y + +    R     ++ + L +M ++G  P++   
Sbjct: 849 MMTQAKELFKD-MQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTL 907

Query: 557 SAIISGMCKHGTLEEARKVFTNL 579
           S I     K G   +A+++  NL
Sbjct: 908 SFICRAFSKPGMTWQAQRLLKNL 930



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 101/447 (22%), Positives = 179/447 (40%), Gaps = 49/447 (10%)

Query: 168 FRAAD--QVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV 225
           FR AD   +  L+ S  R+  +   +  +R +  +P   AY  ++  L+   +  A L  
Sbjct: 68  FRPADPASLNALLYSHCRLRLLRPAIALLRSS--RPTTVAYNILLAALSDHAHAPAVL-- 123

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL-IEGLV 284
             EM K  V  D +   TL+ GLC+ G+V          +  GI    +  G L +  + 
Sbjct: 124 -AEMCKRGVPFDGVTVNTLLAGLCRNGQVDA--AAALADRAGGITPWMSSAGTLSLLDIA 180

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
           G G    A  +   +   G   D+  YN+++ G CR  Q D A  + ++  +  + P+ +
Sbjct: 181 GFGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVA 240

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL 404
           T  P +V                               ++    G EE    A D++E +
Sbjct: 241 TYTPFIV-------------------------------YYCRTKGVEE----AFDLYEGM 265

Query: 405 KGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
              G    V   + L+  L   G   +A  LF +M  +    N +++   I    ++G  
Sbjct: 266 VRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRG 325

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
            E      +++    V  +  Y  L   L K G+ D     +R  L +  S P    Y +
Sbjct: 326 KELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLS-PNGVTYTV 384

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I  +C++   ++  +VL EM ++   PN V  S++I+G  K G L++A +    ++ER 
Sbjct: 385 LIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERG 444

Query: 584 LLTEANTIVYDEILIEHMKKKTADLVL 610
           +    N + Y  ++    K +  D  L
Sbjct: 445 I--NPNVVTYGTLIDGFFKFQGQDAAL 469


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 182/424 (42%), Gaps = 58/424 (13%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+++ L +LE M+   CKP+V+ Y A+++    E  +   + +  +M+   V  D + 
Sbjct: 195 EGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVT 254

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G C  G +     L R M+ +G++ D+  Y  LI  L  +G+  +AC L   L 
Sbjct: 255 YNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLE 314

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + +   +NS+I GLC+  + D A+K  E  V     PD  T +  +         +
Sbjct: 315 TRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFI---------E 365

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
           +  K+    E L F                         + E L+     S   Y I++ 
Sbjct: 366 HLCKMKGSQEGLSF-------------------------IGEMLQKDVKPSTVNYTIVIH 400

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ-- 478
            LL+          +G+M       + ++++ +++ +   G + EA    N ++EMS+  
Sbjct: 401 KLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEA---ENVLMEMSKNG 457

Query: 479 -VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR------- 530
                 AYN L  G   IG+ D A+ +++  + +VAS P +F Y + + H+ R       
Sbjct: 458 VTVDTMAYNTLMDGHASIGQTDHAVSILKQ-MTSVASVPNQFTYFILLRHLVRMRLVEDV 516

Query: 531 ----------SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
                     + E   +  + + M +    PN    S+I+ G  + G  EEA  + + ++
Sbjct: 517 LPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMK 576

Query: 581 ERKL 584
           E  +
Sbjct: 577 EDSI 580



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 99/469 (21%), Positives = 197/469 (42%), Gaps = 47/469 (10%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           +A  L  L  M R+  +PD + + ++I        +D    ++++M       DV++Y  
Sbjct: 27  LASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAA 86

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           LI G C+ GR+    ELF EM +     D  +Y  L++GL   G+  +   +L+ + + G
Sbjct: 87  LIEGFCETGRIDEAVELFGEMDQP----DMHMYAALVKGLCKAGRGEEGLLMLRRMKELG 142

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
           +R     Y +++   C  ++  +A ++ +   +  LAP   T   ++    + GRM +  
Sbjct: 143 WRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDAL 202

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
           ++L  M KL+     ++  +   + G   E ++  A+ +  +++  G +   + YN+L+ 
Sbjct: 203 RVLELM-KLR-GCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIR 260

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
                G ++ A  L   M G  L  +  +++  I    + G   +AC   + +      P
Sbjct: 261 GQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKP 320

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +   +N L  GLCK G++D A   +   + +    P  + Y+  I H+C+   +++ +  
Sbjct: 321 NAVTFNSLINGLCKSGKVDIAWKFLEK-MVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSF 379

Query: 541 LNEMTQE-----------------------------------GCPPNEVICSAIISGMCK 565
           + EM Q+                                   GC P+ V  +  +   C 
Sbjct: 380 IGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCI 439

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK 614
            G L EA  V   + +  +    +T+ Y+ ++  H      D  +S LK
Sbjct: 440 EGRLNEAENVLMEMSKNGV--TVDTMAYNTLMDGHASIGQTDHAVSILK 486



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 174/411 (42%), Gaps = 18/411 (4%)

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y A+IR L    +L + LR    M +     D   + +LI+G C+  +V    +LF +M
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              G   D   Y  LIEG    G++ +A +L  ++     + D+ +Y +++ GLC+  + 
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMD----QPDMHMYAALVKGLCKAGRG 128

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLL-VCCAEMGRMDNFFKLLAQMEK----LKFSVAAD 379
           ++   +     +    P       ++   C E    +    L    EK       +  A 
Sbjct: 129 EEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAV 188

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
           +  +      KE R+  AL V E +K +G   +V  YN L+      G+V KA+ L  KM
Sbjct: 189 INAYC-----KEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKM 243

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
           R   +  +++++++ I+     G I  A      +     +     YN L   LCK G  
Sbjct: 244 RVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRT 303

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D A  L  D L      P    +   I  +C+SG+ +   + L +M   GC P+    S+
Sbjct: 304 DQACSLF-DSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSS 362

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLV 609
            I  +CK    +E       + ++ +  + +T+ Y  ++ + +K++   LV
Sbjct: 363 FIEHLCKMKGSQEGLSFIGEMLQKDV--KPSTVNYTIVIHKLLKERNYGLV 411



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 149/374 (39%), Gaps = 38/374 (10%)

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           Y  +I  L     +  A   L  +V SG+R D   +NS+I G CR  Q D A  LF+   
Sbjct: 14  YNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMP 73

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM 395
               A D  +   L+    E GR+D   +L  +M++    + A L K        EE ++
Sbjct: 74  LRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQPDMHMYAALVKGLCKAGRGEEGLL 133

Query: 396 M-------------------------------ALDVFEELKGKGYS-SVPIYNILMGALL 423
           M                               A ++ +E+  KG +  V     ++ A  
Sbjct: 134 MLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYC 193

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G +  AL +   M+    + N  +++  +Q     G + +A    NK+      P   
Sbjct: 194 KEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAV 253

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            YN L +G C  G I++A  L+R   G+      ++ Y   I  +C+ G  ++   + + 
Sbjct: 254 TYNLLIRGQCIDGHIESAFRLLRLMEGD-GLIADQYTYNALINALCKDGRTDQACSLFDS 312

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           +   G  PN V  +++I+G+CK G ++ A K    +         +T  Y    IEH+ K
Sbjct: 313 LETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAG--CTPDTYTYSS-FIEHLCK 369

Query: 604 KTADLVLSGLKFFG 617
                   GL F G
Sbjct: 370 MKGS--QEGLSFIG 381



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 20/201 (9%)

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
           +S+N +         LMD    I +    + IL++M      P+ F Y  ++R L   R 
Sbjct: 453 MSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRL 512

Query: 219 LDACL-----RVWEE------------MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           ++  L      VW+             MKK+    +   Y +++ G  + GR      L 
Sbjct: 513 VEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLV 572

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             MKE+ I ++  IY  L+       +   A  L+  ++  G+   L  Y  ++ GL   
Sbjct: 573 SLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICE 632

Query: 322 KQFDKAYKLFEVTVQDDLAPD 342
            Q DKA ++F  +   D +PD
Sbjct: 633 GQTDKAKEIFMNSRWKDYSPD 653



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/162 (19%), Positives = 71/162 (43%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + ++  + + M++N   P+   Y++++   + +   +    +   MK+D +  +   Y  
Sbjct: 530 LTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTA 589

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+   CK  R +    L   M ++G +     Y  L+ GL+ EG+  KA ++  +     
Sbjct: 590 LVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKD 649

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           Y  D  ++  II GL +    D + ++  +  + +  P   T
Sbjct: 650 YSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQT 691


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 109/439 (24%), Positives = 193/439 (43%), Gaps = 50/439 (11%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           RI + L +   M  + CK D+ AY  +I VL  +  L        EM  + +  +V+ Y 
Sbjct: 403 RIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYT 462

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           ++I G CK G V    E+F+ M+  G   +   YG LI GL+ + K+ KA  L+  + + 
Sbjct: 463 SIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQED 522

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G    +  Y ++I G C+  +FD A++LFE+  Q+ L PD    N L     + GR +  
Sbjct: 523 GITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEA 582

Query: 363 FKLLAQ----MEKLKFS--------------------------VAADLEKFFEFL--VGK 390
           +  L +    + K+ ++                            ADL  +   L  + K
Sbjct: 583 YSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCK 642

Query: 391 EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
           ++++  AL + +++   G   ++  Y I++  +++ G+   A  LF +M     + ++ +
Sbjct: 643 QKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATT 702

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           +++ I  + + G I EA     ++      P V  YN    G   +G ID A   ++  +
Sbjct: 703 YTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKR-M 761

Query: 510 GNVASGPTEFKYALTILHVCR-----------SG-----EAEKIIEVLNEMTQEGCPPNE 553
            + +  P  + Y L + H  +           SG     E   + ++L  M + G  P  
Sbjct: 762 VDASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQLLERMMKHGLNPTV 821

Query: 554 VICSAIISGMCKHGTLEEA 572
           V  S+II+G CK   LEEA
Sbjct: 822 VTYSSIIAGFCKATRLEEA 840



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 176/418 (42%), Gaps = 23/418 (5%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +   LE+ + M    C P+ + Y ++I  L  ++ L   + +  +M++D +   V+ Y
Sbjct: 472 GMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITY 531

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G CK         LF  M++NG+  D   Y VL + L   G+  +A   L   V 
Sbjct: 532 TTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFL---VR 588

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G       Y S++ G  +    D A  L E  V +    D  T + LL    +  +++ 
Sbjct: 589 KGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNE 648

Query: 362 FFKLLAQM--EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
              +L QM    +K ++ A      E +  KE +   A  +F E+   G+  S   Y + 
Sbjct: 649 ALSILDQMTVSGVKCNIVAYTIIISEMI--KEGKHDHAKSLFNEMISSGHKPSATTYTVF 706

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + +  +IG +++A +L G+M    +  + ++++I I      G I  A     ++++ S 
Sbjct: 707 ISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASC 766

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMM------------LVRDCLGNVAS---GPTEFKYAL 523
            P+   Y  L K   K+  I+A  +            +V   L  +      PT   Y+ 
Sbjct: 767 EPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQLLERMMKHGLNPTVVTYSS 826

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            I   C++   E+   +L+ M  +   PNE I + +I   C      +A    T++ E
Sbjct: 827 IIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIE 884



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 125/511 (24%), Positives = 208/511 (40%), Gaps = 88/511 (17%)

Query: 105 PQVVTELSKL------------RRVTPDL----VAEVLKVEN---NPTLASKFFHWAGKQ 145
           P +V EL ++            +R++P +    VA++ +      +P  A  FF    ++
Sbjct: 20  PDIVAELGRVLSTRRWNKGSAYKRLSPSVTAAHVADLFRAPVSPLDPATALAFFECVARR 79

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQ-VPELMDSQGR---IAEMLEILEKMRRNLCKP 201
            G++H  AS+ AL   L+R       D+ V  ++   G    + E ++ ++ +RR   K 
Sbjct: 80  PGFRHTAASHAALLQLLARRRAPANYDKLVLSMISCSGTAEDVREAVDAIQAIRRVGGKR 139

Query: 202 DVFA---YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
            V +   Y   +R L      +   +++  + ++ +  D + Y T+IM  CK G +   H
Sbjct: 140 LVLSPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAH 199

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
             F  ++E+G+ +D      L+ G      + KAC LL  +   G R +   Y  +I GL
Sbjct: 200 RYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGL 259

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQMEKLKFSV 376
           C  +   +A  L  + V D  + +  T   L+  +C                        
Sbjct: 260 CEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLC------------------------ 295

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLF 435
                        KE RI  A  + +E+  +G   SV  YN ++    + G +K AL + 
Sbjct: 296 -------------KEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIK 342

Query: 436 GKM--RGLN---LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
             M   G N      NSL + +        G + EA E  N  I     P+V  +  L  
Sbjct: 343 ALMEQNGCNPDDWTYNSLIYGLC------GGKLDEAEELLNGAIARGFTPTVITFTNLIN 396

Query: 491 GLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           G CK   ID A+     M+  +C  ++ +          ++  CR  EA+   E LNEM 
Sbjct: 397 GYCKAERIDDALRVKSNMISSNCKLDLQAYGVLIN---VLIKKCRLKEAK---ETLNEMF 450

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
             G  PN V  ++II G CK G +  A +VF
Sbjct: 451 ANGLAPNVVTYTSIIDGYCKVGMVGAALEVF 481



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 103/444 (23%), Positives = 178/444 (40%), Gaps = 41/444 (9%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C+ + ++YT +I+ L   R +   L +   M  D    ++  Y  LI GLCK GR+    
Sbjct: 245 CRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDAR 304

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L  EM   G++     Y  +I+G    G++  A  +   +  +G   D   YNS+I GL
Sbjct: 305 GLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGL 364

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C  K  D+A +L    +     P   T   L+    +  R+D+  ++ + M  +  +   
Sbjct: 365 CGGK-LDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNM--ISSNCKL 421

Query: 379 DLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
           DL+ +   +  + K+ R+  A +   E+   G + +V  Y  ++    ++G V  AL +F
Sbjct: 422 DLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVF 481

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             M       N+ ++   I   ++   + +A     K+ E    P V  Y  L +G CK 
Sbjct: 482 KLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKK 541

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL-------------- 541
            E D A  L      N  + P E  Y +    +C+SG AE+    L              
Sbjct: 542 HEFDNAFRLFEMMEQNGLT-PDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTS 600

Query: 542 ------------------NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
                              +M  EGC  +    S ++  +CK   L EA  +   +    
Sbjct: 601 LVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSG 660

Query: 584 LLTEANTIVYDEILIEHMKKKTAD 607
           +  + N + Y  I+ E +K+   D
Sbjct: 661 V--KCNIVAYTIIISEMIKEGKHD 682



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 99/430 (23%), Positives = 185/430 (43%), Gaps = 37/430 (8%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + E L ++  M  + C  ++  YT +I+ L  E  +     + +EM    V   V  Y  
Sbjct: 265 VREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNA 324

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I G CK GR+     +   M++NG   D   Y  LI GL G GK+ +A +LL   +  G
Sbjct: 325 MIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCG-GKLDEAEELLNGAIARG 383

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
           +   +  + ++I G C+ ++ D A ++    +  +   D      L+    +  R+    
Sbjct: 384 FTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAK 443

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMG 420
           + L +M      +A ++  +   + G  K   +  AL+VF+ ++ +G + +   Y  L+ 
Sbjct: 444 ETLNEM--FANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIY 501

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L++  ++ KA+ L  KM+   +    ++++  IQ   +  +   A      + +    P
Sbjct: 502 GLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTP 561

Query: 481 SVAAYNCLTKGLCKIGEIDAAM-MLVRDCL------------GNVASGPTEF-------- 519
              AYN LT  LCK G  + A   LVR  +            G   +G T+F        
Sbjct: 562 DEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKM 621

Query: 520 ----------KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
                      Y++ +  +C+  +  + + +L++MT  G   N V  + IIS M K G  
Sbjct: 622 VNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKH 681

Query: 570 EEARKVFTNL 579
           + A+ +F  +
Sbjct: 682 DHAKSLFNEM 691



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 174/399 (43%), Gaps = 10/399 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GR+ + L I   M +N C PD + Y ++I  L   + LD    +            V+ 
Sbjct: 332 SGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCGGK-LDEAEELLNGAIARGFTPTVIT 390

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  LI G CK  R+     +   M  +   +D   YGVLI  L+ + ++ +A + L ++ 
Sbjct: 391 FTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMF 450

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +G   ++  Y SII G C+V     A ++F++   +   P+  T   L+    +  ++ 
Sbjct: 451 ANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLH 510

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
               L+ +M++    +   +  +   + G  K+     A  +FE ++  G +     YN+
Sbjct: 511 KAMALITKMQE--DGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNV 568

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L  AL + G  ++A Y F   +G+ L    ++++  +    ++G+   A     K++   
Sbjct: 569 LTDALCKSGRAEEA-YSFLVRKGVVL--TKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEG 625

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
               +  Y+ L + LCK  +++ A+ ++ D +           Y + I  + + G+ +  
Sbjct: 626 CKADLYTYSVLLQALCKQKKLNEALSIL-DQMTVSGVKCNIVAYTIIISEMIKEGKHDHA 684

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
             + NEM   G  P+    +  IS  CK G +EEA  + 
Sbjct: 685 KSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLI 723



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 123/326 (37%), Gaps = 56/326 (17%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q ++ E L IL++M  +  K ++ AYT +I  +  E   D    ++ EM     +     
Sbjct: 643 QKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATT 702

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y   I   CK GR+     L  EM+ +G+  D   Y + I G    G + +A   LK +V
Sbjct: 703 YTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMV 762

Query: 301 DS---------------------------------------------------GYRADLG 309
           D+                                                   G    + 
Sbjct: 763 DASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQLLERMMKHGLNPTVV 822

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            Y+SII G C+  + ++A  L +  +  D++P+      L+ CC ++         +  M
Sbjct: 823 TYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDM 882

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIG 426
             ++F     LE +   +VG   E     A  +F +L G  Y+   + + IL   LL+ G
Sbjct: 883 --IEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILNDGLLKAG 940

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSI 452
            V     L   M   +  ++S S+S+
Sbjct: 941 HVDFCSQLLAAMDNRHCRIDSESYSM 966


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 105/426 (24%), Positives = 185/426 (43%), Gaps = 31/426 (7%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           E+ ++M R    P V  Y  +I     +  +     VW++M    ++ +V+ Y T+I  L
Sbjct: 172 ELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICAL 231

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C+ G +     LF  MKE G+  ++  Y VL+ G      V  A  L ++L+ SG   + 
Sbjct: 232 CEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNA 291

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
            I+ ++I G C+ K+F +A  +F    +  +AP     N L+      G       L  +
Sbjct: 292 VIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQE 351

Query: 369 MEKLKFSVAADLEKFFEFLVGK---EERIMMALDVFEELKGKGYSSVPI----YNILMGA 421
           M +L        ++F   +V +   +   M   D F  L+G     V +    YN L+  
Sbjct: 352 MTRLGLCP----DEFTCSIVVRGLCDGGQMHVADRF--LQGVQEDGVNLNAAAYNALIDE 405

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
              IG +++AL    +M  + +E N +S+S  I  H + G +  A   + +++     P+
Sbjct: 406 YCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPN 465

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V  Y  L  G  K G IDAA  L ++ + N  S P     ++ +  +CR    ++ +  +
Sbjct: 466 VVTYTALIHGHAKNGGIDAAFRLHKEMIENGIS-PNAITVSVLVDGLCRENRVQEAVRFV 524

Query: 542 NEMTQEGCP-----------------PNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
            E +   C                  PN VI   +I G+   G   EA K+F+ +R+  +
Sbjct: 525 MEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGM 584

Query: 585 LTEANT 590
           + ++ T
Sbjct: 585 IPDSFT 590



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 165/381 (43%), Gaps = 10/381 (2%)

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GL K  R     ELF EM   G++     Y  LI     +G V KA ++   +V      
Sbjct: 160 GLVKARRPGCAWELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDP 219

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           ++  Y ++I  LC       A +LF+   +  + P+  T N L+       R D    ++
Sbjct: 220 NVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLM--SGHCQRDDVNSAVV 277

Query: 367 AQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
              E LK  +  +   F   + G  K +R   A  +F E+   G + +VP+YN LM    
Sbjct: 278 LYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAF 337

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
             G  ++AL L+ +M  L L  +  + SI ++   + G +  A      + E     + A
Sbjct: 338 RSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAA 397

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           AYN L    C+IG ++ A+      +  V   P    Y+  I    + G+ +  + +  E
Sbjct: 398 AYNALIDEYCRIGNLEEALATCTR-MTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTE 456

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT--IVYDEILIEHM 601
           M  +G  PN V  +A+I G  K+G ++ A ++   + E  +   A T  ++ D +  E+ 
Sbjct: 457 MVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRENR 516

Query: 602 KKKTADLVL--SGLKFFGLES 620
            ++    V+  SGLK   + S
Sbjct: 517 VQEAVRFVMEYSGLKCSDIHS 537



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 74/396 (18%), Positives = 154/396 (38%), Gaps = 60/396 (15%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I +   + + M+    +P+ + Y  ++       ++++ + +++E+ K  +  + + 
Sbjct: 234 EGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVI 293

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + TLI G CK  R      +F EM   G+     +Y  L++G    G   +A  L +++ 
Sbjct: 294 FTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMT 353

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D    + ++ GLC   Q   A +  +   +D +  + +  N L+    E  R+ 
Sbjct: 354 RLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALI---DEYCRIG 410

Query: 361 NFFKLLAQMEKL-KFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYS-SVPIYN 416
           N  + LA   ++ +  +  ++  +   + G  +R  + +A+ ++ E+  KG   +V  Y 
Sbjct: 411 NLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYT 470

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA---------- 466
            L+    + G +  A  L  +M    +  N+++ S+ +        + EA          
Sbjct: 471 ALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRENRVQEAVRFVMEYSGL 530

Query: 467 -----------------CECHNKIIEMS-------------------------QVPSVAA 484
                            C   N +I M+                          +P    
Sbjct: 531 KCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFT 590

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
           Y  L +G C +G +  AMML  D +  +   PT +K
Sbjct: 591 YTLLIRGQCMLGYVLNAMMLYADMM-KIGVKPTRYK 625



 Score = 39.3 bits (90), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 105/295 (35%), Gaps = 77/295 (26%)

Query: 87  PIARFITD-AFRKNQFQWGPQVVTELSKL----RRVTPDLVAEVLKVENNPTLASKFFHW 141
           P+   + D AFR    Q    +  E+++L       T  +V   L       +A +F   
Sbjct: 327 PVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQG 386

Query: 142 AGKQKGYKHNFASYNALA--YCLSRN--NLFRAADQVPE------------LMDSQGRIA 185
             ++ G   N A+YNAL   YC   N         ++ E            L+D   +  
Sbjct: 387 V-QEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRG 445

Query: 186 EM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA-- 240
           +M   + I  +M     +P+V  YTA+I   A    +DA  R+ +EM ++ +  + +   
Sbjct: 446 KMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVS 505

Query: 241 --------------------------------------------------YVTLIMGLCK 250
                                                             Y+TLI GL  
Sbjct: 506 VLVDGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYL 565

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G+     +LF  M+++G++ D   Y +LI G    G V  A  L  D++  G +
Sbjct: 566 DGQHCEAGKLFSYMRKSGMIPDSFTYTLLIRGQCMLGYVLNAMMLYADMMKIGVK 620


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 102/494 (20%), Positives = 215/494 (43%), Gaps = 41/494 (8%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG------------ 182
           A +FF++ G  K + H+  S+  L + L   NLF  A  + + +  +G            
Sbjct: 88  ALRFFNFLGLHKNFNHSTMSFCILIHALVNANLFWPASSLLQTLLLRGGLDPREVFEALL 147

Query: 183 -------------------------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER 217
                                    R+ + + I   MR+    P V     ++  LA  R
Sbjct: 148 DCFEKCDFISSLGFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIR 207

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
            +D  L ++ E+    +  D+  YV +I   C+     +  E+ + M+ +   ++  +Y 
Sbjct: 208 RVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSD--LNVVVYN 265

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           VLI GL    +V +A ++   L+  G  A    Y +++ GLC+V++F+    + +  ++ 
Sbjct: 266 VLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIEL 325

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA 397
              P  + ++ L+      G++ + F L+ +++K+    +  +       + K+ +   A
Sbjct: 326 GFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEA 385

Query: 398 LDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
             +F+E+  KG  +  + Y+IL+ +    G++  A++  GKM    +++    ++  I  
Sbjct: 386 ELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLING 445

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
           H + G++  A    +++I+    P+V +Y  L  G C  G++  A  L  +  G     P
Sbjct: 446 HCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGK-GIAP 504

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
             + +   I  + R+        + +EM ++   PNEV  + +I G CK G   +A ++ 
Sbjct: 505 NTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELL 564

Query: 577 TNLRERKLLTEANT 590
             + ++ L+ +  T
Sbjct: 565 NQMVQKGLVPDTYT 578



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 124/499 (24%), Positives = 219/499 (43%), Gaps = 59/499 (11%)

Query: 167 LFRAADQVPELMDSQGRIAEMLEILEKMRR-------------NLCKPDVFAYTAMIRVL 213
           +FR   Q  ELM     + E+L  L K+RR                +PD++ Y A+IR  
Sbjct: 180 IFRLMRQC-ELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSF 238

Query: 214 AAERN---------------LDACL------------RVWE--EMKKDLVEADVMA---- 240
              +N               L+  +            RVWE  E+K  L++  + A    
Sbjct: 239 CELKNFAKAKEMIQRMESSDLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVT 298

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TL++GLCK      G  +  EM E G +   A    L+EGL  +GKV  A DL+  + 
Sbjct: 299 YCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVK 358

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G    L +YN++I  LC+  +FD+A  LF+   +  L  +  T + L+      G++D
Sbjct: 359 KVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLD 418

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
                L +M  +   +   +  +   + G  K   +  A+  F+E+  KG   +V  Y  
Sbjct: 419 TAIHFLGKM--IMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTS 476

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+      G++ +A  L+ +M G  +  N+ +F+  I     +  + +A    ++++E +
Sbjct: 477 LISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQN 536

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAE 535
            +P+   YN + +G CK G    A  L+      V  G  P  + Y   I  +C +G   
Sbjct: 537 MMPNEVTYNVMIEGHCKEGNTVKAFELLNQM---VQKGLVPDTYTYRPLISSLCSTGRVC 593

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           +  + ++++ +E    NE+  SA++ G CK G L +A  V   + +R +  + + + Y  
Sbjct: 594 EAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGV--DMDLVCYAV 651

Query: 596 ILIEHMKKKTADLVLSGLK 614
           ++   +K++    V   LK
Sbjct: 652 LIDGTIKEQDTSAVFGLLK 670



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/443 (22%), Positives = 190/443 (42%), Gaps = 27/443 (6%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
            KG K    SY +L   YC                  ++G++ E   +  +M      P+
Sbjct: 464 DKGLKPTVVSYTSLISGYC------------------NKGKLHEAFRLYHEMTGKGIAPN 505

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
            + +T +I  L     +    R+++EM +  +  + + Y  +I G CK G  V+  EL  
Sbjct: 506 TYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLN 565

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           +M + G++ D   Y  LI  L   G+V +A   + DL    ++ +   Y++++ G C+  
Sbjct: 566 QMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEG 625

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           +   A  +    V+  +  D      L+    +       F LL  M   +     D   
Sbjct: 626 RLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLR--PDKVI 683

Query: 383 FFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
           +   + G  K   +  A  +++ +  +G + ++  Y  L+  L + G + KA  L+ +M 
Sbjct: 684 YTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEML 743

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
             N   N +++   +      G + +A + HN +++   + +  +YN L +G CK+G ++
Sbjct: 744 VSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLK-GLLANTVSYNILVRGFCKLGRVE 802

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A  L+ + + N A  P    Y+  I   CR G  +  IE  + M  +G  P+ +  + +
Sbjct: 803 EATKLLDEMIDN-AIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFL 861

Query: 560 ISGMCKHGTLEEARKVFTNLRER 582
           I G C  G L +A ++  ++  R
Sbjct: 862 IYGCCIAGELGKAFELRDDMIRR 884



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 103/459 (22%), Positives = 189/459 (41%), Gaps = 41/459 (8%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L+DS   +G++   +  L KM     K  V+ Y ++I       NL A +  ++EM    
Sbjct: 407 LIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKG 466

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           ++  V++Y +LI G C  G++     L+ EM   GI  +   +  LI  L    ++  A 
Sbjct: 467 LKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAF 526

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            L  ++++     +   YN +I G C+     KA++L    VQ  L PD  T  PL+   
Sbjct: 527 RLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSL 586

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SV 412
              GR+    K +  + +  F +             KE R+  AL V  E+  +G    +
Sbjct: 587 CSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDL 646

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             Y +L+   ++  +      L   M    L  + + ++  I  + ++G + +A    + 
Sbjct: 647 VCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDI 706

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           +I+    P++  Y  L   LCK G +D A +L ++ L +  S P    Y   + H+ R G
Sbjct: 707 MIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVS-NSTPNHVTYCCFLDHLAREG 765

Query: 533 EAEKIIEV----------------------------------LNEMTQEGCPPNEVICSA 558
             EK +++                                  L+EM      P+ +  S 
Sbjct: 766 SMEKAVQLHNDMLKGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYST 825

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           II   C+ G L+ A + +  +  + L  + +T+ Y+ ++
Sbjct: 826 IIYQCCRRGNLDGAIEFWDTMLNKGL--KPDTLAYNFLI 862



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 182/408 (44%), Gaps = 10/408 (2%)

Query: 170 AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
           A   + E +  +G++ +  +++ ++++    P +F Y A+I  L  +   D    +++EM
Sbjct: 333 ALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEM 392

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
            +  + A+ + Y  LI   C+ G++        +M   GI I    Y  LI G    G +
Sbjct: 393 GEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNL 452

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
             A     +++D G +  +  Y S+I G C   +  +A++L+       +AP+  T   L
Sbjct: 453 SAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTL 512

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGK 407
           +       RM + F+L  +M  L+ ++  +   +   + G  KE   + A ++  ++  K
Sbjct: 513 ISALFRANRMTDAFRLFDEM--LEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQK 570

Query: 408 GYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
           G   VP    Y  L+ +L   G V +A      +   + ++N + +S  +  + + G + 
Sbjct: 571 GL--VPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLR 628

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
           +A     ++++      +  Y  L  G  K  +  A   L+++ + +    P +  Y   
Sbjct: 629 DALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKN-MHDQRLRPDKVIYTSM 687

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           I    ++G  +K   + + M  EGC PN V  + +I+ +CK G +++A
Sbjct: 688 IDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKA 735



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 159/382 (41%), Gaps = 36/382 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G   +  E+L +M +    PD + Y  +I  L +   +    +  +++ ++  + + M 
Sbjct: 554 EGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMC 613

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ G CK GR+     + REM + G+ +D   Y VLI+G + E        LLK++ 
Sbjct: 614 YSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMH 673

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D   R D  IY S+I G  +     KA+ ++++ + +   P+  T   L+    + G MD
Sbjct: 674 DQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMD 733

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
               L  +M                                  L      +   Y   + 
Sbjct: 734 KAELLWKEM----------------------------------LVSNSTPNHVTYCCFLD 759

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L   G ++KA+ L   M    L  N++S++I ++   + G + EA +  +++I+ +  P
Sbjct: 760 HLAREGSMEKAVQLHNDMLK-GLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFP 818

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
               Y+ +    C+ G +D A+    D + N    P    Y   I   C +GE  K  E+
Sbjct: 819 DCITYSTIIYQCCRRGNLDGAIEF-WDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFEL 877

Query: 541 LNEMTQEGCPPNEVICSAIISG 562
            ++M + G  PN+    ++  G
Sbjct: 878 RDDMIRRGVKPNQATHKSLSHG 899



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 12/165 (7%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           N + YC   ++L R           +G + + +++   M + L    V +Y  ++R    
Sbjct: 750 NHVTYCCFLDHLAR-----------EGSMEKAVQLHNDMLKGLLANTV-SYNILVRGFCK 797

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
              ++   ++ +EM  + +  D + Y T+I   C+ G +    E +  M   G+  D   
Sbjct: 798 LGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLA 857

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           Y  LI G    G++GKA +L  D++  G + +   + S+  G  R
Sbjct: 858 YNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSLSHGASR 902


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 108/468 (23%), Positives = 202/468 (43%), Gaps = 28/468 (5%)

Query: 131 NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEI 190
           NP     FF+  G    ++ +FAS +     + RN   R +D +        ++ + +++
Sbjct: 23  NPPTVPSFFNLCG-SGCWERSFASASGDYREILRN---RLSDII--------KVDDAVDL 70

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
              M ++   P +  +  ++  +A     +  + + E+M+   +  D+  Y   I   C+
Sbjct: 71  FGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCR 130

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
             ++     +  +M + G   D      L+ G     ++  A  L+  +V+ GY+ D   
Sbjct: 131 RSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFT 190

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           + ++I GL    +  +A  L +  VQ    PD  T   ++    + G +D    LL +ME
Sbjct: 191 FTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKME 250

Query: 371 KLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGE 427
             +  + A++  F   +  + K   + +A+D+F E++ KG   +V  YN L+  L   G 
Sbjct: 251 AAR--IKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGR 308

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
              A  L   M    +  N ++F+  I    + G ++EA + H ++I+ S  P    YN 
Sbjct: 309 WSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNL 368

Query: 488 LTKGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
           L  G C    +D A      M+ +DCL N+ +      Y   I   C+    E  +E+  
Sbjct: 369 LINGFCMHNRLDEAKQMFKFMVSKDCLPNIQT------YNTLINGFCKCKRVEDGVELFR 422

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           EM+Q G   N V  + II G  + G  + A+ VF  +   ++ T+  T
Sbjct: 423 EMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMT 470



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 108/467 (23%), Positives = 206/467 (44%), Gaps = 30/467 (6%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEM 187
           G  H+  +Y+    C  R +    A  V   M   G                   RI++ 
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           + ++++M     KPD F +T +I  L         + + ++M +   + D++ Y T++ G
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK G +     L  +M+   I  +  I+  +I+ L     V  A DL  ++   G R +
Sbjct: 233 LCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPN 292

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  YNS+I  LC   ++  A +L    ++  + P+  T N L+    + G++    KL  
Sbjct: 293 VVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHE 352

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLE 424
           +M  ++ S+  D   +   + G     R+  A  +F+ +  K    ++  YN L+    +
Sbjct: 353 EM--IQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCK 410

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS-VA 483
              V+  + LF +M    L  N+++++  IQ   ++GD   A     +++  ++VP+ + 
Sbjct: 411 CKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVS-NRVPTDIM 469

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            Y+ L  GLC  G++D A+++ +  L         F Y   I  +C++G   K+ E  + 
Sbjct: 470 TYSILLHGLCSYGKLDTALVIFK-YLQKSEMELNIFIYNTMIEGMCKAG---KVGEAWDL 525

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
                  P+ V  + +ISG+C    L+EA  +F  ++E   L  + T
Sbjct: 526 FCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGT 572



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 140/321 (43%), Gaps = 31/321 (9%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------------PELMDS---QGRI 184
           + KG + N  +YN+L  CL     +  A ++                  L+D+   +G++
Sbjct: 285 ETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKL 344

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  ++ E+M +    PD   Y  +I        LD   ++++ M       ++  Y TL
Sbjct: 345 VEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTL 404

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK  RV  G ELFREM + G++ +   Y  +I+G    G    A  + K +V +  
Sbjct: 405 INGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRV 464

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  Y+ ++ GLC   + D A  +F+   + ++  +    N ++    + G++   + 
Sbjct: 465 PTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWD 524

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYSSVP---IYNILM 419
           L   +     S+  D+  +   + G   + ++  A D+F ++K  G  ++P    YN L+
Sbjct: 525 LFCSL-----SIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDG--TLPNSGTYNTLI 577

Query: 420 GALLEIGEVKKALYLFGKMRG 440
            A L   +   +  L  +MR 
Sbjct: 578 RANLRDCDRAASAELIKEMRS 598



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 4/149 (2%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G++   L I + ++++  + ++F Y  MI  +     +      W+      ++ DV+
Sbjct: 480 SYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVG---EAWDLFCSLSIKPDVV 536

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I GLC    +    +LFR+MKE+G L +   Y  LI   + +     + +L+K++
Sbjct: 537 TYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEM 596

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
             SG+  D     S++  +    + DK++
Sbjct: 597 RSSGFVGDASTI-SLVTNMLHDGRLDKSF 624


>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
 gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
 gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 118/504 (23%), Positives = 210/504 (41%), Gaps = 77/504 (15%)

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ 181
           V + L+ E+   LA  FF        +KH   ++  +   L+ +    +   + + M  Q
Sbjct: 46  VVKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQ 105

Query: 182 G------------------RIAE-MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
           G                   +AE  +E+  +++   C P V  Y  ++  L  E  +   
Sbjct: 106 GFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMI 165

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
             V+ +MK+D  E +V  Y  L+  LCK  +V    +L  EM   G   D   Y  +I  
Sbjct: 166 YMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISS 225

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           +   G V +  +L +      +   + +YN++I GLC+   +  A++L    V+  ++P+
Sbjct: 226 MCEVGLVKEGRELAER-----FEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPN 280

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
             + + L+      G+++  F  L QM K                               
Sbjct: 281 VISYSTLINVLCNSGQIELAFSFLTQMLK------------------------------- 309

Query: 403 ELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM-RGLNLEVNSLSFSIAIQCHVESG 461
             +G   +   + +++ G  L  G    AL L+ +M RG  L+ N ++++  +Q     G
Sbjct: 310 --RGCHPNIYTLSSLVKGCFLR-GTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHG 366

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGP 516
           +I++A    + + E+   P++  Y  L  G  K G +D A+     ML   C  NV    
Sbjct: 367 NIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVV-- 424

Query: 517 TEFKYALTILHVCRSG---EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
               Y   +  +CR     EAE +IE+   M++E C P+    +A I G+C  G L+ A 
Sbjct: 425 ----YTNMVEALCRHSKFKEAESLIEI---MSKENCAPSVPTFNAFIKGLCDAGRLDWAE 477

Query: 574 KVFTNLRERKLLTEANTIVYDEIL 597
           KVF  + E++     N + Y+E+L
Sbjct: 478 KVFRQM-EQQHRCPPNIVTYNELL 500



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/443 (22%), Positives = 186/443 (41%), Gaps = 44/443 (9%)

Query: 172 DQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK 231
           + V + +  + RI  +  +   M+R+  +P+VF Y  +++ L     +D   ++  EM  
Sbjct: 150 NHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSN 209

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
                D ++Y T+I  +C+ G V  G EL    +        ++Y  LI GL  E     
Sbjct: 210 KGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEP-----VVSVYNALINGLCKEHDYKG 264

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A +L++++V+ G   ++  Y+++I  LC   Q + A+      ++    P+  T++ L+ 
Sbjct: 265 AFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVK 324

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY 409
            C   G   +   L  QM +  F +  ++  +   + G      I+ A+ VF  ++  G 
Sbjct: 325 GCFLRGTTFDALDLWNQMIR-GFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGC 383

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           S ++  Y  L+    + G +  A+Y++ KM       N + ++  ++         EA  
Sbjct: 384 SPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAES 443

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD------CLGNVAS-------- 514
               + + +  PSV  +N   KGLC  G +D A  + R       C  N+ +        
Sbjct: 444 LIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGL 503

Query: 515 ---GPTEFKYAL-----------------TILH-VCRSGEAEKIIEVLNEMTQEGCPPNE 553
                 E  Y L                 T+LH  C +G     ++++ +M  +G  P+E
Sbjct: 504 AKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDE 563

Query: 554 VICSAIISGMCKHGTLEEARKVF 576
           +  + II   CK G  E A ++ 
Sbjct: 564 ITMNMIILAYCKQGKAERAAQML 586



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 156/360 (43%), Gaps = 31/360 (8%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           +KG   N  SY+ L   L                 + G+I      L +M +  C P+++
Sbjct: 274 EKGISPNVISYSTLINVLC----------------NSGQIELAFSFLTQMLKRGCHPNIY 317

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             +++++           L +W +M +   ++ +V+AY TL+ G C  G +V+   +F  
Sbjct: 318 TLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSH 377

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M+E G   +   YG LI G    G +  A  +   ++ SG   ++ +Y +++  LCR  +
Sbjct: 378 MEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSK 437

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           F +A  L E+  +++ AP   T N  +    + GR+D   K+  QME+ +     ++  +
Sbjct: 438 FKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQ-QHRCPPNIVTY 496

Query: 384 FEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
            E L G  K  RI  A  +  E+  +G   S   YN L+      G    AL L GKM  
Sbjct: 497 NELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMV 556

Query: 441 LNLEVNSLSFSIAIQCHVESG------DILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
                + ++ ++ I  + + G       +L+   C  +       P V +Y  +  GLC+
Sbjct: 557 DGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRR----KWRPDVISYTNVIWGLCR 612



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 99/450 (22%), Positives = 190/450 (42%), Gaps = 24/450 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------PELMDSQGRIAEMLEI-LE 192
           K+ G++ N  +YN L   L +NN    A ++          P+ +     I+ M E+ L 
Sbjct: 173 KRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLV 232

Query: 193 KMRRNLCK---PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           K  R L +   P V  Y A+I  L  E +      +  EM +  +  +V++Y TLI  LC
Sbjct: 233 KEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLC 292

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS-GYRADL 308
             G++        +M + G   +      L++G    G    A DL   ++   G + ++
Sbjct: 293 NSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNV 352

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             YN+++ G C      KA  +F    +   +P+  T   L+   A+ G +D    +  +
Sbjct: 353 VAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNK 412

Query: 369 MEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
           M  L      ++  +   +  + +  +   A  + E +  +  + SVP +N  +  L + 
Sbjct: 413 M--LTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDA 470

Query: 426 GEVKKALYLFGKMRGLN-LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
           G +  A  +F +M   +    N ++++  +    ++  I EA     +I       S + 
Sbjct: 471 GRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSST 530

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN L  G C  G    A+ LV   + +    P E    + IL  C+ G+AE+  ++L+ +
Sbjct: 531 YNTLLHGSCNAGLPGIALQLVGKMMVD-GKSPDEITMNMIILAYCKQGKAERAAQMLDLV 589

Query: 545 T--QEGCPPNEVICSAIISGMCKHGTLEEA 572
           +  +    P+ +  + +I G+C+    E+ 
Sbjct: 590 SCGRRKWRPDVISYTNVIWGLCRSNCREDG 619



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 100/421 (23%), Positives = 174/421 (41%), Gaps = 58/421 (13%)

Query: 197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
           NL K     +  MIR LA +  +D+   + ++MK          ++++I    + G   R
Sbjct: 70  NLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAER 129

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
             E+F  +KE G      IY  +++ L+GE ++     + +D+   G+  ++  YN ++ 
Sbjct: 130 AVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLK 189

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
            LC+  + D A KL          PD  +   ++    E+G +    +L  + E +    
Sbjct: 190 ALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPVVSVY 249

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
            A +       + KE     A ++  E+  KG S +V  Y+ L+  L   G+++ A    
Sbjct: 250 NALING-----LCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFL 304

Query: 436 GKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE-MSQVPSVAAYNCLTKGL 492
            +M  RG +  + +LS S+   C +  G   +A +  N++I      P+V AYN L +G 
Sbjct: 305 TQMLKRGCHPNIYTLS-SLVKGCFLR-GTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGF 362

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           C  G I                                     K + V + M + GC PN
Sbjct: 363 CSHGNI------------------------------------VKAVSVFSHMEEIGCSPN 386

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIVYD---EILIEHMKKKTA 606
                ++I+G  K G+L+ A  ++      K+LT     N +VY    E L  H K K A
Sbjct: 387 IRTYGSLINGFAKRGSLDGAVYIWN-----KMLTSGCCPNVVVYTNMVEALCRHSKFKEA 441

Query: 607 D 607
           +
Sbjct: 442 E 442


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 140/311 (45%), Gaps = 34/311 (10%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PDV  YT +++ LA +  LD  L ++ ++ K     D + Y TLI G CK      G ++
Sbjct: 518 PDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQI 577

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F+ M+ NGI  D  IY VLI     EG V    +LL++++  G   D+  YN++I G C 
Sbjct: 578 FKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCS 637

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           +K F KA KLFEV       P+  T   L+    + GRMD+   + + M          L
Sbjct: 638 LKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSM----------L 687

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
           E+      G E  I+                   Y+ L+    +    + A  L+ KM G
Sbjct: 688 ER------GPEPNIL------------------TYSCLIDGYFKTENTESAFELYEKMLG 723

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             +  N +S+SI I    + G + EA       I    +P V AY  L +G CK+G +  
Sbjct: 724 DRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAE 783

Query: 501 AMMLVRDCLGN 511
           AMML    L N
Sbjct: 784 AMMLYDHMLVN 794



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 210/486 (43%), Gaps = 46/486 (9%)

Query: 176 ELMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAE-RNLDACLRVWEEMKK 231
            +MD+  R+ ++   +E+  +M +    P+V  Y+ +I  L    R L+AC  V+ ++ K
Sbjct: 350 SIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEAC-GVFGQILK 408

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
             +E  V+ Y +LI G CK   +  G  L+  M   G + D  +  +LI GL  +G + +
Sbjct: 409 QGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDE 468

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A       V  G   +  ++N++I G  R+K+     K++ +     + PD  T   L+ 
Sbjct: 469 ALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVK 528

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG- 408
             AE GR+D    L  Q+ K  FS   D   +   + G  K+      L +F+ ++  G 
Sbjct: 529 GLAEQGRLDEALALFFQLLKKGFS--PDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGI 586

Query: 409 YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
           +  + IYN+L+      G V+  L L  ++    LE + ++++  I C   S  I     
Sbjct: 587 FPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMI-CGYCSLKIF---- 641

Query: 469 CHNKIIEMSQV-------PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
             +K I++ +V       P+   +  L    CK G +D AM++    L      P    Y
Sbjct: 642 --SKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLER-GPEPNILTY 698

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           +  I    ++   E   E+  +M  +   PN V  S +I G+CK G +EEA   F     
Sbjct: 699 SCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIG 758

Query: 582 RKLLTEA------------------NTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLK 623
           R LL +                     ++YD +L+  +     DL+   L  +G +   +
Sbjct: 759 RHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPD--DLLQKALAEYGFQDS-Q 815

Query: 624 AKGCKL 629
           AK C L
Sbjct: 816 AKNCVL 821



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 116/495 (23%), Positives = 203/495 (41%), Gaps = 48/495 (9%)

Query: 92  ITDAFRKNQFQWGPQVVTELSKLRRVTP-DLVAEVLKVENNPTLASKFFHWAGKQKGYKH 150
           I  AF  N F +          L  + P  L   V ++ +NPT A +FF WA    G  H
Sbjct: 33  IAKAFHHNNFSFFNS-----GSLPNLQPAHLEPVVFQLRSNPTSALRFFEWAENFLGLCH 87

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
              S+  +A+ L R+ +F  A +V + M  Q    E+L       RN        Y+ ++
Sbjct: 88  PVQSFCGIAHVLLRHRMFDPATRVFDRMVGQFGNLEVLGEFHGSFRNYGSNPSTVYSFLL 147

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
                   +D  +  +  M K  V     A   ++  L    R+    E + EM +    
Sbjct: 148 HCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEEMCKG--- 204

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
               +Y  +    +  G+V K  +  + LV+ G    +   N I+ GLC   Q   A   
Sbjct: 205 --LGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDF 262

Query: 331 FEVTVQDDLAPDFSTVNPLL-VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG 389
           F++ V+   +P+  T + L+ V C E+ R+D  F L   M  ++  +  DL         
Sbjct: 263 FDMMVRSGPSPNLVTFSTLINVYCKEL-RLDEAFSLYNLM--IEKGIVPDL--------- 310

Query: 390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
                                   IY+IL+  L   G++++   LF       ++++ + 
Sbjct: 311 -----------------------VIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVI 347

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           FS  +  +V  GD+ +A E + ++++    P+V  Y+ L  GLC+ G +  A  +    L
Sbjct: 348 FSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQIL 407

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
                 P+   Y+  I   C+S        +   M ++G  P+ V+CS +I+G+ + G +
Sbjct: 408 KQ-GLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMM 466

Query: 570 EEARKVFTNLRERKL 584
           +EA + F    +R L
Sbjct: 467 DEALRFFFQAVKRGL 481



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/445 (21%), Positives = 193/445 (43%), Gaps = 11/445 (2%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           +  + M R+   P++  ++ +I V   E  LD    ++  M +  +  D++ Y  LI GL
Sbjct: 261 DFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGL 320

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
            + G++  G+ LF      G+ +D  I+  +++  V  G +GKA ++   ++  G   ++
Sbjct: 321 FRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNV 380

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             Y+ +I GLCR  +  +A  +F   ++  L P   T + L+    +   + + F L   
Sbjct: 381 VTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGI 440

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYNILMGALLEI 425
           M  L+     D+      + G   + MM  AL  F +   +G + +  ++N L+     +
Sbjct: 441 M--LRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRL 498

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
              +  L ++  M    +  + +++++ ++   E G + EA     ++++    P    Y
Sbjct: 499 KRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIY 558

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
             L  G CK  +    + + +    N    P    Y + I    R G  E ++E+L E+ 
Sbjct: 559 CTLIDGFCKKRDPATGLQIFKLMQSN-GIFPDICIYNVLINMFFREGCVENVLELLREII 617

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKT 605
           + G  P+ V  + +I G C      +A K+F  L+  +  T+ N I +  ++  + K   
Sbjct: 618 KYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGR--TQPNAITFTILIDAYCKDGR 675

Query: 606 AD---LVLSGLKFFGLESKLKAKGC 627
            D   L+ S +   G E  +    C
Sbjct: 676 MDDAMLIFSSMLERGPEPNILTYSC 700


>gi|356534319|ref|XP_003535704.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Glycine max]
          Length = 507

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 181/407 (44%), Gaps = 22/407 (5%)

Query: 118 TPDLVAEVL-KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE 176
           +P+LV EVL K+ N   LA  FF WA KQ  +KH   +++AL   L +   F+    +  
Sbjct: 85  SPELVLEVLNKLSNAGVLALSFFRWAEKQSEFKHTTEAFHALIEALGKIRQFKMIWTLVN 144

Query: 177 LMDSQGRIA------------------EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
            M  +  +                   E ++  EKM     KP V  +  ++ VL   ++
Sbjct: 145 DMKQRKLLTSDTFSLVARRYARARKAKEAIKTFEKMEHYGLKPHVSDFNKLVDVLCKSKS 204

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
           ++    V+++M+K  ++ D+ +Y  L+ G  +   +++ +E+ REM++ G  +D   YG+
Sbjct: 205 VEEAHEVFDKMRKLRLDPDIKSYTILLEGWSQQQNLIKVNEVCREMEDKGFQLDVVAYGI 264

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           ++       K  +A  L  ++   G R    +Y ++I GL   K+ D+A + FEV+    
Sbjct: 265 IMNAHCKAKKFDEAIGLYHEMKARGVRPSPHVYCTLINGLGSDKRLDEALEFFEVSKASG 324

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL 398
             P+  T N ++       RMD+ ++++ +M+K      +         + K  RI  A 
Sbjct: 325 FVPEAPTYNAVVGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTFDIVLHHLIKGRRIEEAS 384

Query: 399 DVFEELKGKGYS---SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
            VF  + G  +    SV  Y I++        +  A+ ++ +M+G  +      FS  + 
Sbjct: 385 SVFRRMNGGEFGCEPSVSTYEIMVRMFCNEELLDMAVAVWDEMKGKGILPGMHMFSTLVC 444

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
                  + EAC+   +++++   P    ++ L + L   G    AM
Sbjct: 445 ALCHESKLDEACKYFQEMLDVGIRPPAKMFSTLKEALVDAGMEHVAM 491



 Score = 42.7 bits (99), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 122/302 (40%), Gaps = 12/302 (3%)

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           S ++     ++++I  L +++QF   + L     Q  L     T + +    A   +   
Sbjct: 114 SEFKHTTEAFHALIEALGKIRQFKMIWTLVNDMKQRKLLTS-DTFSLVARRYARARKAKE 172

Query: 362 FFKLLAQMEK--LKFSVAADLEKFFEFLVGKEERIMMALDVFEEL-KGKGYSSVPIYNIL 418
             K   +ME   LK  V+ D  K  + L  K + +  A +VF+++ K +    +  Y IL
Sbjct: 173 AIKTFEKMEHYGLKPHVS-DFNKLVDVLC-KSKSVEEAHEVFDKMRKLRLDPDIKSYTIL 230

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    +   + K   +  +M     +++ +++ I +  H ++    EA   ++++     
Sbjct: 231 LEGWSQQQNLIKVNEVCREMEDKGFQLDVVAYGIIMNAHCKAKKFDEAIGLYHEMKARGV 290

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMML--VRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
            PS   Y  L  GL     +D A+    V    G V   PT   Y   +   C S   + 
Sbjct: 291 RPSPHVYCTLINGLGSDKRLDEALEFFEVSKASGFVPEAPT---YNAVVGAYCWSLRMDD 347

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
              ++ EM + G  PN      ++  + K   +EEA  VF  +   +   E +   Y EI
Sbjct: 348 AYRMVGEMKKCGIGPNSRTFDIVLHHLIKGRRIEEASSVFRRMNGGEFGCEPSVSTY-EI 406

Query: 597 LI 598
           ++
Sbjct: 407 MV 408



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 91/208 (43%), Gaps = 5/208 (2%)

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A+  FE+++  G    V  +N L+  L +   V++A  +F KMR L L+ +  S++I ++
Sbjct: 173 AIKTFEKMEHYGLKPHVSDFNKLVDVLCKSKSVEEAHEVFDKMRKLRLDPDIKSYTILLE 232

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
              +  ++++  E   ++ +      V AY  +    CK  + D A+ L  + +      
Sbjct: 233 GWSQQQNLIKVNEVCREMEDKGFQLDVVAYGIIMNAHCKAKKFDEAIGLYHE-MKARGVR 291

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P+   Y   I  +      ++ +E        G  P     +A++   C    +++A ++
Sbjct: 292 PSPHVYCTLINGLGSDKRLDEALEFFEVSKASGFVPEAPTYNAVVGAYCWSLRMDDAYRM 351

Query: 576 FTNLRERKLLTEANTIVYDEILIEHMKK 603
              +++  +   + T    +I++ H+ K
Sbjct: 352 VGEMKKCGIGPNSRTF---DIVLHHLIK 376


>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 933

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/434 (22%), Positives = 197/434 (45%), Gaps = 37/434 (8%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++     +L+ M+     P+V  YT  I      + ++    ++E M ++ V  DV+  
Sbjct: 218 GQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTL 277

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLC+ GR    + LFREM + G   +   Y  LI+ L   G+  +   LL ++V 
Sbjct: 278 SALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVS 337

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   DL  Y +++  L +  + D+        + D+L+P+  T   L+    +   +D 
Sbjct: 338 RGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDE 397

Query: 362 FFKLLAQMEK-------LKFSVAAD-------LEKFFEFLVGKEERIM------------ 395
             ++L +ME+       + FS   +       L+K  E+    +ER +            
Sbjct: 398 AEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLID 457

Query: 396 ---------MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
                     AL+V+ ++  +G   +  I + L+  L + G++++A+ LF    G  L +
Sbjct: 458 GFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSL 517

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           + ++++  I    ++GD+  A +   ++++ + +P    YN     LC +G+   A   +
Sbjct: 518 DHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFL 577

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
            + + N+   P +  Y   I+  CR GE  K +++L+EM      PN +  + +++G+  
Sbjct: 578 TE-MRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFG 636

Query: 566 HGTLEEARKVFTNL 579
            G +E+A+ +   +
Sbjct: 637 TGAVEKAKYLLNEM 650



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 108/468 (23%), Positives = 186/468 (39%), Gaps = 46/468 (9%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLC---KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD  G+  +  E+ + +R  L     P+   YT +I  L    N+D   +V  EM++  
Sbjct: 350 LMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKS 409

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE------------ 281
           +  +V+ + ++I G  K G + +  E  R MKE GI  +   YG LI+            
Sbjct: 410 ISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAAL 469

Query: 282 -----------------------GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
                                  GL   GK+ +A  L KD   SG   D   Y ++I GL
Sbjct: 470 EVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGL 529

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
            +      A+K  +  +  ++ PD    N  + C   +G+       L +M  +   +  
Sbjct: 530 FKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNM--GLKP 587

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
           D   +   +V   ++     AL +  E+K      ++  YN L+  L   G V+KA YL 
Sbjct: 588 DQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLL 647

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M       +SL+    +Q   +S  +    + H  ++       +  YN L + LC  
Sbjct: 648 NEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYH 707

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G    A +++ + LG+    P    +   IL  C+S   +       +M  +   PN   
Sbjct: 708 GMTRKATVVLEEMLGS-GIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIAT 766

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
            + ++ G+   G + EA  V   + +  L  E N + YD +   H K+
Sbjct: 767 FNTLLGGLESVGRIGEAGTVLIEMEKSGL--EPNNLTYDILATGHGKQ 812



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 101/441 (22%), Positives = 188/441 (42%), Gaps = 43/441 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + +  E    M+     P+V  Y  +I      +  DA L V+ +M  + V+ +   
Sbjct: 427 RGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFI 486

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             +L+ GL + G++     LF++   +G+ +D   Y  LI+GL   G +  A    ++L+
Sbjct: 487 VDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELM 546

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D     D  +YN  I  LC + +F +A           L PD ST N ++V     G   
Sbjct: 547 DRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETA 606

Query: 361 NFFKLLAQM-------------------------EKLKFSVAADLEKFFEFLVGKEERIM 395
              KLL +M                         EK K+ +   +   F        R++
Sbjct: 607 KALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVL 666

Query: 396 MA----------LDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
            A          LD+ E +   G ++ + +YN L+  L   G  +KA  +  +M G  + 
Sbjct: 667 QACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIA 726

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI-DAAMM 503
            ++++F+  I  H +S  +  A   + +++  +  P++A +N L  GL  +G I +A  +
Sbjct: 727 PDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTV 786

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI--IEVLNEMTQEGCPPNEVICSAIIS 561
           L+   +      P    Y   IL      ++ K+  + +  EM  +G  P     +A+IS
Sbjct: 787 LIE--MEKSGLEPNNLTY--DILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALIS 842

Query: 562 GMCKHGTLEEARKVFTNLRER 582
              K G + +A+++F ++++R
Sbjct: 843 DFTKAGMMTQAKELFKDMQKR 863



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 113/455 (24%), Positives = 191/455 (41%), Gaps = 29/455 (6%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G   +  + N L   L RN      D    L D  G I  +              DV 
Sbjct: 128 KRGVPFDGVTVNTLLAGLCRNG---QVDAAAALADRGGGIHAL--------------DVI 170

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            +  +I       +  A L V + M    +  DV+ Y TL+ G C+ G+V     +   M
Sbjct: 171 GWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMM 230

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           KE G+  + A Y   I        V +A DL + +V +G   D+   ++++ GLCR  +F
Sbjct: 231 KEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRF 290

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +AY LF    +   AP+  T   L+   A+ GR      LL +M  +   V  DL  + 
Sbjct: 291 SEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEM--VSRGVVMDLVTYT 348

Query: 385 EFL--VGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGL 441
             +  +GK+ +     D          S   + Y +L+ AL +   V +A  +  +M   
Sbjct: 349 ALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEK 408

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
           ++  N ++FS  I   V+ G + +A E    + E    P+V  Y  L  G  K    DAA
Sbjct: 409 SISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAA 468

Query: 502 MMLVRDCLGNVASGPTEFKYALTIL--HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           + +  D L     G    K+ +  L   + ++G+ E+ + +  + +  G   + V  + +
Sbjct: 469 LEVYHDML---CEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTL 525

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           I G+ K G +  A K    L +R +L +A  +VY+
Sbjct: 526 IDGLFKAGDMPTAFKFGQELMDRNMLPDA--VVYN 558



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 106/505 (20%), Positives = 199/505 (39%), Gaps = 49/505 (9%)

Query: 111 LSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRA 170
           + K R + P++V          TL   FF + G+    +     ++ L   +  N     
Sbjct: 439 MMKERGINPNVVTY-------GTLIDGFFKFQGQDAALE---VYHDMLCEGVKVNKFI-- 486

Query: 171 ADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK 230
            D +   +   G+I E + + +    +    D   YT +I  L    ++    +  +E+ 
Sbjct: 487 VDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELM 546

Query: 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
              +  D + Y   I  LC  G+         EM+  G+  D++ Y  +I     +G+  
Sbjct: 547 DRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETA 606

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           KA  LL ++  S  + +L  YN+++ GL      +KA  L    V    +P   T   +L
Sbjct: 607 KALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVL 666

Query: 351 VCCAEMGRMD------------------NFFKLLAQM---------------EKLKFSVA 377
             C++  R+D                    +  L Q+               E L   +A
Sbjct: 667 QACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIA 726

Query: 378 ADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL 434
            D   F   ++G  K   +  A   + ++  +  S ++  +N L+G L  +G + +A  +
Sbjct: 727 PDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTV 786

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
             +M    LE N+L++ I    H +  + +EA   + +++    VP V+ YN L     K
Sbjct: 787 LIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTK 846

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
            G +  A  L +D +      PT   Y + +    R     ++ + L +M ++G  P++ 
Sbjct: 847 AGMMTQAKELFKD-MQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKG 905

Query: 555 ICSAIISGMCKHGTLEEARKVFTNL 579
             S I     K G   +A+++  NL
Sbjct: 906 TLSFICRAFSKPGMTWQAQRLLKNL 930



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 103/447 (23%), Positives = 180/447 (40%), Gaps = 49/447 (10%)

Query: 168 FRAAD--QVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV 225
           FR AD   +  L+ S  R+  +   +  +R +  +P   AY  ++  L+   +  A L  
Sbjct: 68  FRPADPASLNALLYSHCRLRLLRPAIALLRSS--RPTTVAYNILLAALSDHAHAPAVL-- 123

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI-LIDRAIYGVLIEGLV 284
             EM K  V  D +   TL+ GLC+ G+V     L    +  GI  +D   +  LI G  
Sbjct: 124 -AEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALAD--RGGGIHALDVIGWNTLIAGYC 180

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
             G    A  +   +   G   D+  YN+++ G CR  Q D A  + ++  +  + P+ +
Sbjct: 181 RVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVA 240

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL 404
           T  P +V                               ++    G EE    A D++E +
Sbjct: 241 TYTPFIV-------------------------------YYCRTKGVEE----AFDLYEGM 265

Query: 405 KGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
              G    V   + L+  L   G   +A  LF +M  +    N +++   I    ++G  
Sbjct: 266 VRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRG 325

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
            E      +++    V  +  Y  L   L K G+ D     +R  L +  S P    Y +
Sbjct: 326 KELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLS-PNGVTYTV 384

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I  +C++   ++  +VL EM ++   PN V  S++I+G  K G L++A +    ++ER 
Sbjct: 385 LIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERG 444

Query: 584 LLTEANTIVYDEILIEHMKKKTADLVL 610
           +    N + Y  ++    K +  D  L
Sbjct: 445 I--NPNVVTYGTLIDGFFKFQGQDAAL 469


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 182/419 (43%), Gaps = 51/419 (12%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           + G K N   YN+L    +R                  R+AEML+++E       +P V 
Sbjct: 171 RHGVKVNALCYNSLLDAYTREK-------------DDDRVAEMLKVMEN---EGIEPTVG 214

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            YT ++  L+A R++     V+EEMK   +  DV  Y ++I   C+ G V R  E+F E 
Sbjct: 215 TYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDEC 274

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
             NGI  +   YG LI G    G++  A  L+ D+   G   +  ++N++I G CR    
Sbjct: 275 VGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMV 334

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           DKA ++  +  +  +  D  T N L        RMD    LL                  
Sbjct: 335 DKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLL------------------ 376

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                   RIM+        KG   + V  Y  L+      G++ +A  LF +M G   E
Sbjct: 377 --------RIMIE-------KGVRPNHVS-YTTLISIHCNEGDMVEARRLFREMAGNGAE 420

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            + +++++ +  +++ G I EA    N++ +   VP + +Y  L  G C  G++D A+ L
Sbjct: 421 PSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRL 480

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
             + +    S P    Y   I  + + G +E+  ++ + M  +G  P++ + SA++  +
Sbjct: 481 FEE-MKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSL 538



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 162/370 (43%), Gaps = 28/370 (7%)

Query: 224 RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
           ++ +EM +  V+ + + Y +L+    +     R  E+ + M+  GI      Y +L++GL
Sbjct: 164 QLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGL 223

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
                + K   + +++       D+  Y+S+I   CR     +A ++F+  V + + P+ 
Sbjct: 224 SAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNE 283

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQME-------KLKFSVAAD-------LEKFFEFLVG 389
            T   L+    ++G+M+    L+  M+       ++ F+   D       ++K  E  + 
Sbjct: 284 HTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKM- 342

Query: 390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
             E++ + LDV+             YN L   L     + +A  L   M    +  N +S
Sbjct: 343 IMEKMGIELDVY------------TYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVS 390

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           ++  I  H   GD++EA     ++      PS+  YN +  G  K G I  A    ++ +
Sbjct: 391 YTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERF-KNEM 449

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
                 P  + YA  +   C +G+ +  + +  EM Q G  PN V  +A+ISG+ K G  
Sbjct: 450 EKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRS 509

Query: 570 EEARKVFTNL 579
           EEA +++ N+
Sbjct: 510 EEAFQLYDNM 519



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 9/312 (2%)

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           V+++G    G+V  A  LL ++   G + +   YNS++    R K  D+  ++ +V   +
Sbjct: 148 VVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENE 207

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERI 394
            + P   TV    +    +    +  K+ A  E++K    +    F+  ++    +   +
Sbjct: 208 GIEP---TVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNV 264

Query: 395 MMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
             A +VF+E  G G   +   Y  L+    +IG+++ A  L   M+   + +N + F+  
Sbjct: 265 RRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTM 324

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
           I  +     + +A E    + +M     V  YN L  GL +   +D A  L+R  +    
Sbjct: 325 IDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLR-IMIEKG 383

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
             P    Y   I   C  G+  +   +  EM   G  P+ V  + ++ G  K G++ EA 
Sbjct: 384 VRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAE 443

Query: 574 KVFTNLRERKLL 585
           + F N  E+K L
Sbjct: 444 R-FKNEMEKKGL 454



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 96/207 (46%), Gaps = 16/207 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G + +  +YN LA  L R N    A  +  +M  +G                 +P+ 
Sbjct: 345 EKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKG----------------VRPNH 388

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            +YT +I +   E ++    R++ EM  +  E  ++ Y  ++ G  K G +        E
Sbjct: 389 VSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNE 448

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M++ G++ D   Y  L+ G    GKV  A  L +++   G + +L  Y ++I GL +  +
Sbjct: 449 MEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGR 508

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            ++A++L++  + D L PD +  + L+
Sbjct: 509 SEEAFQLYDNMLGDGLTPDDALYSALV 535


>gi|255661030|gb|ACU25684.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 376

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 168/371 (45%), Gaps = 16/371 (4%)

Query: 143 GKQKGYKH---NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLC 199
           G ++ YK    +  S +A+ Y    N  FRA           GRI + +E+ E M R   
Sbjct: 8   GAERVYKEMAESKVSPDAVVYNAMLNGFFRA-----------GRIKDCIELWELMGREXS 56

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           + +V ++  M+R L    ++D  + +WE M +     D   Y  L+ G CK G + +   
Sbjct: 57  Q-NVVSFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLR 115

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           +    +E G ++D   Y  +I GL  E K+ +A  +L  ++ +G   +  +YN++I G  
Sbjct: 116 VLEIAEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFM 175

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
            V +FD A ++F      + +P   T N L+    +  R    + L+ +M +  +     
Sbjct: 176 GVSKFDDAIRVFREMGSTNCSPTVVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPCVI 235

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
                   + +  ++ MAL ++ ++   G    V + NIL+  L  +G+ + AL L+  M
Sbjct: 236 TYSLLMKGLCQGHKVEMALQLWNQVISNGLKPDVQMLNILIHGLCSVGKTQLALMLYFDM 295

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
              N   N ++ +  ++   + GDI  A     +I+     P + +YN   KGLC    I
Sbjct: 296 NRWNCAPNLVTHNTLMEGFYKDGDIRNALGIWARILRNGLQPDIVSYNITLKGLCSCSRI 355

Query: 499 DAAMMLVRDCL 509
             A++ ++D L
Sbjct: 356 SFAILFLQDAL 366



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/371 (19%), Positives = 151/371 (40%), Gaps = 44/371 (11%)

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF----REMKENGILIDR 273
           ++D   RV++EM +  V  D + Y  ++ G  + GR+    EL+    RE  +N +    
Sbjct: 5   DIDGAERVYKEMAESKVSPDAVVYNAMLNGFFRAGRIKDCIELWELMGREXSQNVV---- 60

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             + +++ GL G G V KA  + + +  SG+  D   Y  ++ G C+    +K+ ++ E+
Sbjct: 61  -SFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLEI 119

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER 393
             +     D    + ++    +  ++D    +L  M                        
Sbjct: 120 AEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGM------------------------ 155

Query: 394 IMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
                     +K  G  +  +YN L+   + + +   A+ +F +M   N     ++++  
Sbjct: 156 ----------IKNGGTPNAHVYNTLINGFMGVSKFDDAIRVFREMGSTNCSPTVVTYNTL 205

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
           I    +     EA +   +++E    P V  Y+ L KGLC+  +++ A+ L    + N  
Sbjct: 206 INGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVISN-G 264

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
             P      + I  +C  G+ +  + +  +M +  C PN V  + ++ G  K G +  A 
Sbjct: 265 LKPDVQMLNILIHGLCSVGKTQLALMLYFDMNRWNCAPNLVTHNTLMEGFYKDGDIRNAL 324

Query: 574 KVFTNLRERKL 584
            ++  +    L
Sbjct: 325 GIWARILRNGL 335



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/267 (19%), Positives = 111/267 (41%), Gaps = 3/267 (1%)

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C     D A ++++   +  ++PD    N +L      GR+ +  +L   M +       
Sbjct: 1   CESGDIDGAERVYKEMAESKVSPDAVVYNAMLNGFFRAGRIKDCIELWELMGREXSQNVV 60

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGK 437
                   L G  + +  A+ ++E +   G+      Y IL+    + G + K+L +   
Sbjct: 61  SFNIMMRGLFGNGD-VDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLEI 119

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
                  +++ ++S  I    +   + EA    N +I+    P+   YN L  G   + +
Sbjct: 120 AEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFMGVSK 179

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
            D A+ + R+ +G+    PT   Y   I  +C+     +  +++ EM ++G  P  +  S
Sbjct: 180 FDDAIRVFRE-MGSTNCSPTVVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPCVITYS 238

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKL 584
            ++ G+C+   +E A +++  +    L
Sbjct: 239 LLMKGLCQGHKVEMALQLWNQVISNGL 265



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 74/163 (45%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R AE  +++++M     KP V  Y+ +++ L     ++  L++W ++  + ++ DV    
Sbjct: 214 RFAEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVISNGLKPDVQMLN 273

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI GLC  G+      L+ +M       +   +  L+EG   +G +  A  +   ++ +
Sbjct: 274 ILIHGLCSVGKTQLALMLYFDMNRWNCAPNLVTHNTLMEGFYKDGDIRNALGIWARILRN 333

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           G + D+  YN  + GLC   +   A    +  +   +AP   T
Sbjct: 334 GLQPDIVSYNITLKGLCSCSRISFAILFLQDALAKKIAPSIIT 376


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 114/486 (23%), Positives = 203/486 (41%), Gaps = 41/486 (8%)

Query: 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE-KMRRNLCKPDVFAYT 207
           +H FA++  +     R N+   +  +  L D++ R+ E  +IL  +M    C PDV AY 
Sbjct: 107 EHGFAAFGLILKTGWRVNVIVISQLLKGLCDAK-RVDEATDILLLRMSEFGCPPDVVAYN 165

Query: 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
            +I     E  ++    ++ EM    +  +V+ Y T+I GLCK   V R   +F++M + 
Sbjct: 166 TVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDR 225

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           G+  D   Y  LI G +  GK  +   +L+++   G   D   Y  ++  LC+  +  +A
Sbjct: 226 GVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREA 285

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
              F+   +  + PD +    LL   A  G +      L  M     S    +       
Sbjct: 286 RLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCA 345

Query: 388 VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
             K+  I  A+ +F +++ +G S  V  +  L+ AL ++G V  A+  F +M    +  N
Sbjct: 346 YAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPN 405

Query: 447 SLSFSI----------------------------------AIQCHV-ESGDILEACECHN 471
              FS                                    + C++   G ++EA    +
Sbjct: 406 IFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLID 465

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
            +I +   P+V +YN L  G C  G ID A  L+ D + +    P EF Y + +   C++
Sbjct: 466 LMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLL-DVMVSNGLKPNEFTYTILLRGYCKA 524

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
              +    +  EM  +G  P     + I+ G+ + G   EA +++ N+   +  T+ +  
Sbjct: 525 RRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSR--TKCDIY 582

Query: 592 VYDEIL 597
            Y+ IL
Sbjct: 583 TYNIIL 588



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 180/410 (43%), Gaps = 41/410 (10%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           I E + I  KMR+    PDV ++ A+I  L     +D  +  + +M  + V  ++  + +
Sbjct: 352 IEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSS 411

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+ GLC  G+  +  ELF E+ + GI +D   +  L+  L  EG+V +A  L+  ++  G
Sbjct: 412 LVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVG 471

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            R ++  YN+++ G C   + D+A KL +V V + L P+  T   LL    +  R+D+ +
Sbjct: 472 VRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAY 531

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVF-EELKGKGYSSVPIYNILMG 420
            L  +M  L   V   +  +   L G  +  R   A +++   +  +    +  YNI++ 
Sbjct: 532 SLFREM--LMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILN 589

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L +   V +A  +F ++   + +++S++F+I I   ++ G   +A +    I     VP
Sbjct: 590 GLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVP 649

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  Y  + + L + G +                                 GE + +   
Sbjct: 650 DVVTYRLIAENLIEEGSL---------------------------------GEFDGL--- 673

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            + M + G  PN  + +A++  +   G +  A      L E+    EA+T
Sbjct: 674 FSAMEKSGTAPNSHMLNALVRRLLHRGDISRAGVYLYKLDEKNFSLEAST 723



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 107/483 (22%), Positives = 190/483 (39%), Gaps = 56/483 (11%)

Query: 170 AADQVPEL---MDSQGR-----IAEMLEILEKMRRNLCKPDVFAYTAMIRVL-------A 214
           AAD+  EL   + S+ R     + E L++ +++        V A+  ++ V+       A
Sbjct: 8   AADRCLELERVIASRARSGSLGLDEALKLFDELLHCARPASVRAFNQLLTVVSRAGCSSA 67

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF------------- 261
           +ER +    R+  E     V  +   Y  LI   C+ GR+  G   F             
Sbjct: 68  SERVVSLFTRMARECSSK-VAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVI 126

Query: 262 -----------------------REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
                                    M E G   D   Y  +I G   EG+V KA +L  +
Sbjct: 127 VISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLE 186

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           ++D G   ++  Y ++I GLC+ +  D+A  +F+  +   + PD  T N L+      G+
Sbjct: 187 MMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGK 246

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNI 417
                ++L +M                  + K  R   A   F+ +  KG    V IY I
Sbjct: 247 WKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAI 306

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+      G + +       M G  +  N   F+I    + +   I EA    NK+ +  
Sbjct: 307 LLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQG 366

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P V ++  L   LCK+G +D A++     + N    P  F ++  +  +C  G+ EK 
Sbjct: 367 LSPDVVSFGALIDALCKLGRVDDAVLQFNQMI-NEGVTPNIFVFSSLVYGLCTVGKWEKA 425

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            E+  E+  +G   + V  + ++  +C  G + EA+++   +   ++    N I Y+ ++
Sbjct: 426 EELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLM--IRVGVRPNVISYNTLV 483

Query: 598 IEH 600
             H
Sbjct: 484 AGH 486



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 138/282 (48%), Gaps = 11/282 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++GR+ E   +++ M R   +P+V +Y  ++        +D   ++ + M  + ++ +  
Sbjct: 453 NEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEF 512

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  L+ G CK  RV   + LFREM   G+    A Y  ++ GL   G+  +A +L  ++
Sbjct: 513 TYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNM 572

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           ++S  + D+  YN I+ GLC+    D+A+K+F      D   D  T N ++    + GR 
Sbjct: 573 INSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRK 632

Query: 360 DNFFKLLAQMEKLKFSVAADLEKF---FEFLVGKEERIMMALD-VFEELKGKGYS-SVPI 414
           ++   L A +    + +  D+  +    E L+  EE  +   D +F  ++  G + +  +
Sbjct: 633 EDAMDLFATIS--AYGLVPDVVTYRLIAENLI--EEGSLGEFDGLFSAMEKSGTAPNSHM 688

Query: 415 YNILMGALLEIGEVKKA-LYLFG-KMRGLNLEVNSLSFSIAI 454
            N L+  LL  G++ +A +YL+    +  +LE ++ S  I++
Sbjct: 689 LNALVRRLLHRGDISRAGVYLYKLDEKNFSLEASTTSMLISL 730



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 99/283 (34%), Gaps = 55/283 (19%)

Query: 147 GYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           G + N  SYN L   +CL+                  GRI E  ++L+ M  N  KP+ F
Sbjct: 471 GVRPNVISYNTLVAGHCLT------------------GRIDEAAKLLDVMVSNGLKPNEF 512

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLV------------------------------ 234
            YT ++R     R +D    ++ EM    V                              
Sbjct: 513 TYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNM 572

Query: 235 -----EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
                + D+  Y  ++ GLCK   V    ++FR +      +D   + ++I  L+  G+ 
Sbjct: 573 INSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRK 632

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
             A DL   +   G   D+  Y  I   L       +   LF    +   AP+   +N L
Sbjct: 633 EDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNAL 692

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392
           +      G +      L ++++  FS+ A        L  + E
Sbjct: 693 VRRLLHRGDISRAGVYLYKLDEKNFSLEASTTSMLISLYSRGE 735


>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
          Length = 604

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 186/408 (45%), Gaps = 19/408 (4%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKK-DLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           DVFA+ +++  LA  R++    R++  M+    V  DV+ Y  L+ GLCK GRV     +
Sbjct: 135 DVFAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRV 194

Query: 261 FREMKENGILI--DRAIYGVLIEGLVGEGKVGKACDLLKDLVDS--GYRADLGIYNSIIG 316
              M    + I  D      +++GL   G+V +A   ++  + S  G   +   YN +I 
Sbjct: 195 LDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLID 254

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
             CRV     AY+L E    + +  +  T+N ++      GR     +   + ++  +  
Sbjct: 255 AFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFRE-KRTVWPE 313

Query: 377 AADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKAL 432
                  +  LVG       + MA+++F E   +G+S   I Y  ++  L + G ++ A 
Sbjct: 314 GKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDAC 373

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            +   M+    ++++ +++I I        + EA E   ++ E+   P V  YN L  G 
Sbjct: 374 SMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGS 433

Query: 493 CKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
           CK G+  A    V + LG +      P+   +   +   C+ G+ ++ + +L  M + G 
Sbjct: 434 CKAGDFAA----VDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGI 489

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            PN VI + +I  +CK G ++ A ++F  ++E+ +   AN   ++ +L
Sbjct: 490 HPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSV--PANVTTFNALL 535



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 112/493 (22%), Positives = 219/493 (44%), Gaps = 36/493 (7%)

Query: 121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS 180
           +++++L   ++P  A++F   +        +  ++N++   L+R         VP +   
Sbjct: 105 ILSKLLARFSSPEPAARFLAASLAAGAPAPDVFAFNSILAALAR------VRDVPGM--- 155

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM-KKDL-VEADV 238
             RI  +++    +R     PDV  Y  ++  L     +   LRV + M ++DL +  DV
Sbjct: 156 -ARIYALMQGCASVR-----PDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDV 209

Query: 239 MAYVTLIMGLCKGGRVVRGHELF--REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           +   T++ GLCK GRV         R    +G   +   Y  LI+     G +  A +L+
Sbjct: 210 VTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELV 269

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF--EVTVQDDL---APDFSTVNPLLV 351
           + + + G   ++   N+I+GGLCR  +   A + F  + TV  +    A  +ST+   L+
Sbjct: 270 EKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALL 329

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGY 409
               +G     F      EK+    + D   +F  + G  +  R+  A  +   +K  G+
Sbjct: 330 HTNNVGMAMELFH-----EKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGF 384

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
                 YNIL+        + +A  L  +M+ + +  +  +++  +    ++GD     E
Sbjct: 385 KLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDE 444

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
              K+I+    PSV  +  L  G CK+G+ID A+ ++R  +      P    Y   I  +
Sbjct: 445 LLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRS-MDESGIHPNNVIYNTLIDFL 503

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C+ G+ +  IE+ +EM ++  P N    +A++ G+      E+A ++   +RE +   + 
Sbjct: 504 CKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDY 563

Query: 589 NTIVYDEILIEHM 601
            T+   ++L+E +
Sbjct: 564 VTV---DVLMEWL 573



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 134/302 (44%), Gaps = 26/302 (8%)

Query: 96  FRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASY 155
           FR+ +  W P+      K   VT   +   L   NN  +A + FH   ++    H   S 
Sbjct: 304 FREKRTVW-PE-----GKGNAVTYSTLVGALLHTNNVGMAMELFH---EKMSEGH---SP 351

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           +A+ Y    + L +A           GR+ +   +   M+    K D  AY  +I     
Sbjct: 352 DAIMYFTMISGLTQA-----------GRLEDACSMASSMKEAGFKLDTKAYNILIAGFCR 400

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
           ++ L     + +EMK+  +  DV  Y TL+ G CK G      EL  +M ++G       
Sbjct: 401 KKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVIT 460

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           +G L+ G    GK+ +A  +L+ + +SG   +  IYN++I  LC+    D A +LF+   
Sbjct: 461 FGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMK 520

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-EKLKFSVAADLEKFFEFL--VGKEE 392
           +  +  + +T N LL    +    +  F+L+ QM E+  F     ++   E+L  +G+ +
Sbjct: 521 EKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWLPVIGETD 580

Query: 393 RI 394
           R+
Sbjct: 581 RL 582


>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
 gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 118/528 (22%), Positives = 230/528 (43%), Gaps = 56/528 (10%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGK-QKGYKHNFASYNALAYCLSRNNL---FRAAD 172
           +TP+  +E+LK  N+P+LA +FFH+       + H+  +Y+ +   LS++NL   F  A 
Sbjct: 105 LTPNEASEILKSLNSPSLALRFFHFCPSLSPNFHHDCFTYSRIILILSKSNLPDRFHLAR 164

Query: 173 QVPELMDSQG------------RIAEMLEILEK----MRRNLCKPDVFAYTAMIRVLAAE 216
            +   M+  G               E  E L+K    +++   +   + Y  +++     
Sbjct: 165 SIVSEMERNGVRGSISTVNILIGFYENSEDLQKCIGLIKKWGLRMTGYTYKCLVQAYLRS 224

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
           RN +    V+ EMKK     D+ A+  L+  L K   V   +++F +MK      D   Y
Sbjct: 225 RNTEKGFAVYLEMKKKGHMLDIFAFNMLLDALVKDSEVDHAYKVFEDMKRKHCEPDEYTY 284

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
            ++I      GK  ++ +L +++++ GY  ++  YN++I  L   +  DKA  LF   V+
Sbjct: 285 TIMIRMTGKIGKPDESLELFEEMLNKGYSPNVIAYNTMIQALANARMVDKAILLFLKMVE 344

Query: 337 DDLAPD---FSTVNPLLVCCAEMGRMD------------NFFKLLAQMEKLKFSVAADLE 381
            +  P    +S +  LL    ++ ++D            + +  L +  K K   A++  
Sbjct: 345 KECRPSEFTYSVILHLLATERKLHKLDEVVEVSKKYMSRSIYAYLVRTLK-KLGHASEAH 403

Query: 382 KFFEFLVGKEER------------------IMMALDVFEELKGKGYS-SVPIYNILMGAL 422
           + F  +    ER                     A+D+  ++  KG S    +YN +  AL
Sbjct: 404 RLFCNMWNCHERGDRDACVSMLECLCSAGKTTEAIDLLGKIHEKGVSVDTVMYNTVFSAL 463

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            ++ ++     L+ KM+      ++ +++I I     +G + EA +   ++ +    P  
Sbjct: 464 GKLKQISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDSDYKPDT 523

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
            +YN L   L K G +D A M  ++ +      P    Y+  I    ++ + E    + +
Sbjct: 524 CSYNSLINCLGKNGHLDEAHMKFKE-MCEKGLNPDVVTYSTLIECFGKTDKVEMACRLFD 582

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           EM  EGC PN V  + ++  + + G   EA  ++  L+++ L+ ++ T
Sbjct: 583 EMLAEGCYPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLIPDSIT 630



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 169/375 (45%), Gaps = 11/375 (2%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++ E M+R  C+PD + YT MIR+       D  L ++EEM       +V+AY T+I  L
Sbjct: 267 KVFEDMKRKHCEPDEYTYTIMIRMTGKIGKPDESLELFEEMLNKGYSPNVIAYNTMIQAL 326

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
                V +   LF +M E         Y V++  L  E K+ K  ++++  V   Y +  
Sbjct: 327 ANARMVDKAILLFLKMVEKECRPSEFTYSVILHLLATERKLHKLDEVVE--VSKKYMSR- 383

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
            IY  ++  L ++    +A++LF          D      +L C    G+      LL +
Sbjct: 384 SIYAYLVRTLKKLGHASEAHRLFCNMWNCHERGDRDACVSMLECLCSAGKTTEAIDLLGK 443

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGE 427
           + +   SV   +       +GK ++I    D++E++K  G       YNIL+ +    G+
Sbjct: 444 IHEKGVSVDTVMYNTVFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGK 503

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV---PSVAA 484
           V +A+ +F ++   + + ++ S++  I C  ++G + EA   H K  EM +    P V  
Sbjct: 504 VDEAIKIFEELEDSDYKPDTCSYNSLINCLGKNGHLDEA---HMKFKEMCEKGLNPDVVT 560

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y+ L +   K  +++ A  L  + L      P    Y + +  + RSG   + +++  ++
Sbjct: 561 YSTLIECFGKTDKVEMACRLFDEMLAE-GCYPNIVTYNILLDCLERSGRTAEAVDLYAKL 619

Query: 545 TQEGCPPNEVICSAI 559
            Q+G  P+ +  S +
Sbjct: 620 KQQGLIPDSITYSVL 634



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 138/316 (43%), Gaps = 52/316 (16%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMD---SQGRIAEMLEILEKM------RRNLC----- 199
           +Y+ + + L+        D+V E+     S+   A ++  L+K+       R  C     
Sbjct: 353 TYSVILHLLATERKLHKLDEVVEVSKKYMSRSIYAYLVRTLKKLGHASEAHRLFCNMWNC 412

Query: 200 --KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
             + D  A  +M+  L +       + +  ++ +  V  D + Y T+   L K  ++   
Sbjct: 413 HERGDRDACVSMLECLCSAGKTTEAIDLLGKIHEKGVSVDTVMYNTVFSALGKLKQISPL 472

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
           H+L+ +MK++G L D   Y +LI      GKV +A  + ++L DS Y+ D   YNS+I  
Sbjct: 473 HDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSYNSLINC 532

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
           L +    D+A+  F+   +  L PD  T + L+ C                         
Sbjct: 533 LGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLIEC------------------------- 567

Query: 378 ADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFG 436
                      GK +++ MA  +F+E+  +G Y ++  YNIL+  L   G   +A+ L+ 
Sbjct: 568 ----------FGKTDKVEMACRLFDEMLAEGCYPNIVTYNILLDCLERSGRTAEAVDLYA 617

Query: 437 KMRGLNLEVNSLSFSI 452
           K++   L  +S+++S+
Sbjct: 618 KLKQQGLIPDSITYSV 633



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           +I+ + ++ EKM+++   PD F Y  +I        +D  ++++EE++    + D  +Y 
Sbjct: 468 QISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSYN 527

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +LI  L K G +   H  F+EM E G+  D   Y  LIE      KV  AC L  +++  
Sbjct: 528 SLINCLGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAE 587

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
           G   ++  YN ++  L R  +  +A  L+    Q  L PD  T + L
Sbjct: 588 GCYPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLIPDSITYSVL 634


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 179/392 (45%), Gaps = 2/392 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ +  E +  M     KP+V +Y  +I   ++  N++   R+ + M+   +E D   
Sbjct: 240 EGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYT 299

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI G+CK GR+     LF +M E G++ +   Y  LI+G   +G + +A     ++V
Sbjct: 300 YGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV 359

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G    +  YN ++  L    +  +A  + +   +  + PD  T N L+   +  G   
Sbjct: 360 KKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAK 419

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
             F L  +M                +++ +  R+  A D+FE++  +G S  V ++N ++
Sbjct: 420 KAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMV 479

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
                 G V++A  L  +M   ++  + ++F+  +Q     G + EA    +++      
Sbjct: 480 DGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIK 539

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P   +YN L  G  + G+I  A   VRD + ++   PT   Y   I  +C++ E +   E
Sbjct: 540 PDHISYNTLISGYGRRGDIKDAFR-VRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEE 598

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
           +L EM  +G  P++    ++I GM    TL E
Sbjct: 599 LLKEMVNKGISPDDSTYLSLIEGMGNVDTLVE 630



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 171/394 (43%), Gaps = 2/394 (0%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  E  +    M+     P +     M+ +      ++    ++ EM +  + + V  + 
Sbjct: 172 RADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFN 231

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++  LCK G++ +  E    M+  G   +   Y  +I G    G +  A  +L  +   
Sbjct: 232 IMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVK 291

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D   Y S+I G+C+  + ++A  LF+  V+  L P+  T N L+      G ++  
Sbjct: 292 GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 351

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGA 421
           F    +M K     +          +  E R+  A D+ +E++ KG     I YNIL+  
Sbjct: 352 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 411

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
               G  KKA  L  +M    +E   ++++  I        + EA +   KI++    P 
Sbjct: 412 YSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPD 471

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V  +N +  G C  G ++ A ML+++ +   +  P E  +   +   CR G+ E+   +L
Sbjct: 472 VIMFNAMVDGHCANGNVERAFMLLKE-MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLL 530

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           +EM + G  P+ +  + +ISG  + G +++A +V
Sbjct: 531 DEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRV 564



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 159/375 (42%), Gaps = 10/375 (2%)

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V+ +  M+ VL  E  L         M+    + +V++Y T+I G    G +     +  
Sbjct: 227 VYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILD 286

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            M+  GI  D   YG LI G+  EG++ +A  L   +V+ G   +   YN++I G C   
Sbjct: 287 AMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKG 346

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
             ++A+   +  V+  + P  ST N L+      GRM     ++ +M K      A    
Sbjct: 347 DLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAIT-- 404

Query: 383 FFEFLVGKEER---IMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKM 438
            +  L+    R      A D+  E+  KG     + Y  L+  L     +K+A  LF K+
Sbjct: 405 -YNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKI 463

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
               +  + + F+  +  H  +G++  A     ++   S  P    +N L +G C+ G++
Sbjct: 464 LDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKV 523

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           + A ML+ D +      P    Y   I    R G+ +    V +EM   G  P  +  +A
Sbjct: 524 EEARMLL-DEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNA 582

Query: 559 IISGMCKH--GTLEE 571
           +I  +CK+  G L E
Sbjct: 583 LIKCLCKNQEGDLAE 597



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 99/224 (44%), Gaps = 19/224 (8%)

Query: 139 FHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNL 198
            H     KG +    +Y +L Y LSR N  + AD + E +  QG                
Sbjct: 424 LHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQG---------------- 467

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
             PDV  + AM+    A  N++    + +EM +  V  D + + TL+ G C+ G+V    
Sbjct: 468 VSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEAR 527

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L  EMK  GI  D   Y  LI G    G +  A  +  +++  G+   L  YN++I  L
Sbjct: 528 MLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCL 587

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           C+ ++ D A +L +  V   ++PD ST   L+     MG +D  
Sbjct: 588 CKNQEGDLAEELLKEMVNKGISPDDSTYLSLI---EGMGNVDTL 628



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 105/273 (38%), Gaps = 75/273 (27%)

Query: 305 RADLGIYNSIIGGL-----CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           R  L + +SI+  L     C +++ D+A+K F +  +  + P   T N +L    ++ RM
Sbjct: 149 RDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRM 208

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
           +  + L A+M +L+ S                                  S+V  +NI++
Sbjct: 209 EMAWVLYAEMFRLRIS----------------------------------STVYTFNIMV 234

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L + G++KKA    G M GL  +                                   
Sbjct: 235 NVLCKEGKLKKAREFIGFMEGLGFK----------------------------------- 259

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+V +YN +  G    G I+ A  ++ D +      P  + Y   I  +C+ G  E+   
Sbjct: 260 PNVVSYNTIIHGYSSRGNIEGARRIL-DAMRVKGIEPDSYTYGSLISGMCKEGRLEEASG 318

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           + ++M + G  PN V  + +I G C  G LE A
Sbjct: 319 LFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 351



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 9/120 (7%)

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLG---NVASGPTEFKYALTILHVCRSGEAEKI 537
           +V  +N +   LCK G++  A    R+ +G    +   P    Y   I      G  E  
Sbjct: 226 TVYTFNIMVNVLCKEGKLKKA----REFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGA 281

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             +L+ M  +G  P+     ++ISGMCK G LEEA  +F  + E  L+   N + Y+ ++
Sbjct: 282 RRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLV--PNAVTYNTLI 339


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/451 (23%), Positives = 193/451 (42%), Gaps = 40/451 (8%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR  E   +L  M R     D    T ++R    +        ++  M +     +V+ 
Sbjct: 194 EGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVN 253

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y   + GLCK G V +   +  EM   G+  +   +  LI+GL   G   +A  L   LV
Sbjct: 254 YTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLV 313

Query: 301 -DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
             S Y+ ++  Y  +IGG C+  +  +A  L    V+  LAP+ +T   L+      G  
Sbjct: 314 KSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSF 373

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
           D  F+L+ +M+         LE F                           ++  YN ++
Sbjct: 374 DRAFELMNKMK---------LEGFL-------------------------PNIYTYNAII 399

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
           G   + G++++A  +        L  + +++++ I  H + G I  A +  N++ E S  
Sbjct: 400 GGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCH 459

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P +  Y  +    C+  +++ +  L   CL ++   PT+  Y   I   CR G++   ++
Sbjct: 460 PDIDTYTTIIAMYCQQRQMEQSQQLFDKCL-SIGLVPTKQTYTSMIAGYCRVGKSTSALK 518

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           V   M Q GC P+ +   A+ISG+CK   LEEAR +F  + ++ ++    T V   +  E
Sbjct: 519 VFERMVQHGCLPDPITYGALISGLCKESRLEEARALFETMLDKHMVPCDVTCV--TLAYE 576

Query: 600 HMKKKTADLVLSGLKFFGLESKLKAKGCKLL 630
           + ++    + +S L   GL+ + +A     L
Sbjct: 577 YCRRDKTTIAVSFLD--GLDKRQQAHAADAL 605



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/418 (21%), Positives = 168/418 (40%), Gaps = 46/418 (11%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QGR  ++  +  +M      P+V  YTA +  L     +     V EEM    ++ +V  
Sbjct: 229 QGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYT 288

Query: 241 YVTLIMGLCKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           + +LI GLCK G   R   LF ++ K +    +   Y V+I G   EGK+ +A  LL  +
Sbjct: 289 HTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRM 348

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V+ G   +   Y ++I G CR   FD+A++L      +   P+  T N ++    + G++
Sbjct: 349 VEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKI 408

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
              +K+L    ++  S     +K                                Y +L+
Sbjct: 409 QQAYKVL----RMATSQGLCPDKV------------------------------TYTMLI 434

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               + G +  AL LF +M   +   +  +++  I  + +   + ++ +  +K + +  V
Sbjct: 435 TEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLV 494

Query: 480 PSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           P+   Y  +  G C++G+  +A+     M+   CL      P    Y   I  +C+    
Sbjct: 495 PTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCL------PDPITYGALISGLCKESRL 548

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           E+   +   M  +   P +V C  +    C+      A      L +R+    A+ +V
Sbjct: 549 EEARALFETMLDKHMVPCDVTCVTLAYEYCRRDKTTIAVSFLDGLDKRQQAHAADALV 606



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 126/302 (41%), Gaps = 9/302 (2%)

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           G+  D   +  L+ G   EG+  +A  LL  +   G+  D      ++   CR  +F   
Sbjct: 176 GVRPDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDV 235

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKLKFSVAADLEKFFE 385
             LF   V+    P+       +    + G +   F +L +M  + LK +V         
Sbjct: 236 PGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDG 295

Query: 386 FL-VGKEERIMMALDVFEEL-KGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
              +G  ER   A  +F +L K   Y  +V  Y +++G   + G++ +A  L G+M    
Sbjct: 296 LCKIGWTER---AFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQG 352

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           L  N+ +++  I  H   G    A E  NK+     +P++  YN +  G CK G+I  A 
Sbjct: 353 LAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAY 412

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            ++R         P +  Y + I   C+ G     +++ N+M +  C P+    + II+ 
Sbjct: 413 KVLRMATSQ-GLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAM 471

Query: 563 MC 564
            C
Sbjct: 472 YC 473



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 111/268 (41%), Gaps = 24/268 (8%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           K   YK N  +Y  +   YC                   +G++A    +L +M      P
Sbjct: 314 KSSSYKPNVHTYTVMIGGYC------------------KEGKLARAEMLLGRMVEQGLAP 355

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +   YT +I       + D    +  +MK +    ++  Y  +I G CK G++ + +++ 
Sbjct: 356 NTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVL 415

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           R     G+  D+  Y +LI     +G +  A DL   + ++    D+  Y +II   C+ 
Sbjct: 416 RMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQ 475

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
           +Q +++ +LF+  +   L P   T   ++     +G+  +  K+  +M  ++     D  
Sbjct: 476 RQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERM--VQHGCLPDPI 533

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGK 407
            +   + G  KE R+  A  +FE +  K
Sbjct: 534 TYGALISGLCKESRLEEARALFETMLDK 561


>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 766

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 182/405 (44%), Gaps = 8/405 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G + E  E+LE MR +   P  ++Y+ +I  L  +  ++  L + EEM +  V+  ++ 
Sbjct: 336 NGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVT 395

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +L  GLCK G       +F  +   G   D   Y  LI G V +  +G AC L+ ++ 
Sbjct: 396 YSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMR 455

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +G   +   +N +I G C+ ++ DKA ++F + ++  +  +  T N   +   E  R  
Sbjct: 456 MNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCN---IMADEFNREG 512

Query: 361 NFF---KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE-ELKGKGYSSVPIYN 416
           +F+   KL+ +++ L     +         + KE++   A +V    LK   +     YN
Sbjct: 513 HFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYN 572

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+    +     KAL L+ KM  + +  + +++++ I        + EA     ++I+ 
Sbjct: 573 TLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKK 632

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
             VP    + C+  G CK+G++ +A  L  + +      P    Y   I    +    +K
Sbjct: 633 GLVPDEIIFTCIIAGFCKVGDMKSAWALYEE-MSQWGKSPNVVTYTCLIDGYFKIKRMDK 691

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              + N+M ++   P+ +  +A+I G    G  +  R++F  ++E
Sbjct: 692 ADFLFNKMKRDNVTPDGLTYTALIFGYQSLGYSDRVREMFNEMKE 736



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 191/427 (44%), Gaps = 8/427 (1%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           I +  E+LE+M  N   P V  Y A I  L     ++  LR+  +++      +   Y  
Sbjct: 269 IVKATEVLEEMEMNGESPTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNA 328

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I   C+ G +    EL  +M+ +GI      Y +LI+GL  +G+V KA DL++++V S 
Sbjct: 329 VIHEFCRNGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSN 388

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            +  L  Y+S+  GLC+    + +  +F     +    D  + N L+        M +  
Sbjct: 389 VKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSAC 448

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
           KL+ +M ++  SV      F   + G  K +R+  AL+VF  +   G   ++   NI+  
Sbjct: 449 KLVHEM-RMNGSVPNSF-TFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMAD 506

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
                G   +AL L  +++ L +  NS +++I I+   +     +A E    +++ +  P
Sbjct: 507 EFNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFP 566

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
               YN L  G  K      A++L    L  V   P+   Y + I       + ++   +
Sbjct: 567 CAIHYNTLIDGYAKQSNPTKALLLYAKML-KVGIPPSIVTYTMLINMFSNRSKMQEAYYL 625

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
             EM ++G  P+E+I + II+G CK G ++ A  ++  + +       N + Y  ++  +
Sbjct: 626 FKEMIKKGLVPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQWG--KSPNVVTYTCLIDGY 683

Query: 601 MKKKTAD 607
            K K  D
Sbjct: 684 FKIKRMD 690



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 150/355 (42%), Gaps = 26/355 (7%)

Query: 139 FHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRR 196
           FH  G + GYKH+  SYN L   + L R+                  +    +++ +MR 
Sbjct: 416 FHNLGAE-GYKHDVISYNTLINGFVLQRD------------------MGSACKLVHEMRM 456

Query: 197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
           N   P+ F +  +I      + LD  L V+  M K  V+ ++     +     + G    
Sbjct: 457 NGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWE 516

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
             +L  E+++ GI+ +   Y ++I+ L  E K  KA ++L  ++ +        YN++I 
Sbjct: 517 ALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLID 576

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           G  +     KA  L+   ++  + P   T   L+   +   +M   + L  +M  +K  +
Sbjct: 577 GYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEM--IKKGL 634

Query: 377 AADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALY 433
             D   F   + G  K   +  A  ++EE+   G S +V  Y  L+    +I  + KA +
Sbjct: 635 VPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQWGKSPNVVTYTCLIDGYFKIKRMDKADF 694

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
           LF KM+  N+  + L+++  I  +   G      E  N++ E    P+  AY  L
Sbjct: 695 LFNKMKRDNVTPDGLTYTALIFGYQSLGYSDRVREMFNEMKENGVFPNYTAYATL 749



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 9/183 (4%)

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A DVF + +  G   ++   N L+    E  + +    LF +++      N  +++I + 
Sbjct: 197 AADVFVQARRFGLELNILSCNFLLNCFAEANQTEFIRSLFEELKDSGPSPNVFTYTIMMN 256

Query: 456 CHVESG-----DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
            + +       DI++A E   ++    + P+V  Y     GLC+ G ++ A+ L+RD   
Sbjct: 257 YYCKGSFGKNIDIVKATEVLEEMEMNGESPTVVTYGAYIHGLCRAGCVEFALRLIRDL-- 314

Query: 511 NVASGP-TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
            + + P   + Y   I   CR+GE  +  E+L +M   G  P     S +I G+CK G +
Sbjct: 315 RIRNQPLNSYCYNAVIHEFCRNGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQV 374

Query: 570 EEA 572
           E+A
Sbjct: 375 EKA 377



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/333 (19%), Positives = 134/333 (40%), Gaps = 26/333 (7%)

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
           GG ++  + L +   EN +L+D                   A D+       G   ++  
Sbjct: 175 GGSIIVANVLIKVFAENNMLVD-------------------AADVFVQARRFGLELNILS 215

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQ 368
            N ++       Q +    LFE       +P+  T   ++   C    G+  +  K    
Sbjct: 216 CNFLLNCFAEANQTEFIRSLFEELKDSGPSPNVFTYTIMMNYYCKGSFGKNIDIVKATEV 275

Query: 369 MEKLKFS-VAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
           +E+++ +  +  +  +  ++ G  +   +  AL +  +L+ +    +   YN ++     
Sbjct: 276 LEEMEMNGESPTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCR 335

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            GE+ +A  L   MR   +   + S+SI I    + G + +A +   ++++ +  PS+  
Sbjct: 336 NGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVT 395

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y+ L  GLCK G  + ++ +  + LG          Y   I       +     ++++EM
Sbjct: 396 YSSLFDGLCKSGLTEISLSMFHN-LGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEM 454

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
              G  PN    + +I G CK   L++A +VFT
Sbjct: 455 RMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFT 487


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 95/415 (22%), Positives = 182/415 (43%), Gaps = 11/415 (2%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S GR+ +  +  ++M      PDV  Y  M+        L+  +++ +EM    +E++  
Sbjct: 267 SAGRLKDACQHFDEMS---SPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNAT 323

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y ++I  LC  G+V     +  +M  +G+ +D  ++  +I G   +G +  A  L +++
Sbjct: 324 VYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEM 383

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G  AD   + ++I GLCR  +  +A ++ +  V   L  D  T   L+    + G M
Sbjct: 384 QKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNM 443

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
              F++  +M   +  VA ++  +     G  K+  +  A ++  E+  KG   +V  YN
Sbjct: 444 VEAFRVHNEMVGRR--VAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYN 501

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+  L + G +++A+ +  +M       +  +++  I    +SG+   A     ++++ 
Sbjct: 502 SLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDK 561

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILHVCRSGEAE 535
              PS+A YN L  G C  G ++    L+   L  NV   P    Y   +   C     +
Sbjct: 562 GIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVR--PNVVTYNSLMKQYCIDKNMK 619

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
              E+   M  +   PNE   + +I G CK   ++EA      + E+ L   A++
Sbjct: 620 STTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASS 674



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 147/331 (44%), Gaps = 1/331 (0%)

Query: 173 QVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
            V  L+ ++G++++ L +LE M  +    D   +T +I    ++ +L A  R++EEM+K 
Sbjct: 327 SVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKR 386

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            + AD + +  LI GLC+ G +     + +EM + G+ +D   Y VLI+G    G + +A
Sbjct: 387 GLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEA 446

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
             +  ++V      ++  Y ++  GLC+      A +L        L  +  T N L+  
Sbjct: 447 FRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLING 506

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-S 411
             + G ++   +++ +ME                 + K      A ++ +E+  KG   S
Sbjct: 507 LCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPS 566

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           +  YN+LM      G V+    L   M   N+  N ++++  ++ +    ++    E + 
Sbjct: 567 IATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYK 626

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
            +      P+   YN L KG CK   +  A+
Sbjct: 627 GMHSQEVAPNENTYNILIKGHCKARNMKEAL 657



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 145/330 (43%), Gaps = 39/330 (11%)

Query: 170 AADQVPE--LMDSQGRIAEMLE---ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLR 224
           AAD+V    L++   R  E+ E   +L++M       DV  YT +I       N+    R
Sbjct: 389 AADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFR 448

Query: 225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
           V  EM    V  +V+ Y  L  GLCK G V   +EL  EM   G+ ++   Y  LI GL 
Sbjct: 449 VHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLC 508

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
             G + +A  ++ ++  +G+R D+  Y ++I  LC+  +FD+A+ + +  +   + P  +
Sbjct: 509 KFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIA 568

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL 404
           T N L+      GR++   KLL                  E+++ K  R           
Sbjct: 569 TYNVLMNGFCMSGRVEGGKKLL------------------EWMLEKNVR----------- 599

Query: 405 KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
                 +V  YN LM        +K    ++  M    +  N  +++I I+ H ++ ++ 
Sbjct: 600 -----PNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMK 654

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           EA   H ++IE     + ++Y+ L + L K
Sbjct: 655 EALYFHQEMIEKGLRLTASSYSALIRLLNK 684



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 93/227 (40%), Gaps = 49/227 (21%)

Query: 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
           A+ +F EL  K   S   +NIL+ ALL  G +K A   F                     
Sbjct: 243 AIALFRELPDKNVCS---HNILLKALLSAGRLKDACQHFD-------------------- 279

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG-NVASG 515
                             EMS  P V  Y  +  G C  GE++ A+ L+ +     + S 
Sbjct: 280 ------------------EMSSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESN 321

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
            T +   + +L  C  G+    + VL +MT  G   + V+ + +ISG C  G L  AR++
Sbjct: 322 ATVYTSVIALL--CNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRL 379

Query: 576 FTNLRERKLLTEANTIVYDEI---LIEHMKKKTADLVLSGLKFFGLE 619
           F  +++R L   A+ + +  +   L    + K AD VL  +   GL+
Sbjct: 380 FEEMQKRGL--AADRVTHTALINGLCRAGELKEADRVLQEMVDKGLD 424



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 20/169 (11%)

Query: 146 KGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           KG K + A+YN L   +C+S                  GR+    ++LE M     +P+V
Sbjct: 561 KGIKPSIATYNVLMNGFCMS------------------GRVEGGKKLLEWMLEKNVRPNV 602

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y ++++    ++N+ +   +++ M    V  +   Y  LI G CK   +       +E
Sbjct: 603 VTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQE 662

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
           M E G+ +  + Y  LI  L  + K  +A      + + G  A+  +Y+
Sbjct: 663 MIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKMRNEGLTAEPDVYS 711


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 122/503 (24%), Positives = 212/503 (42%), Gaps = 29/503 (5%)

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ 181
           V  VL+   NP+LA+ FF  +     +     +YNA+   LS +    A ++V E M   
Sbjct: 84  VIPVLRTLRNPSLAAPFFLASSAASPHPLPADAYNAVLPFLSHD--LAAMEKVLEEMSVL 141

Query: 182 G-------------------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
           G                   R+ +   ++  MRR   +P   AYT +I  +A  R  +  
Sbjct: 142 GYGVPNPACADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERA 201

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
           L +  +M++   E  V  + TL+  L + GRV     L  E+K + +  D  +Y V I+ 
Sbjct: 202 LELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDC 261

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
               G V  A     +L   G + D   Y S+I  LC+  +  +A +LF     +   P 
Sbjct: 262 FGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPC 321

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDV 400
               N +++     G+ +N +KLL Q+++        +  F   L  +GK+ ++  AL +
Sbjct: 322 AYAYNTMIMGYGSAGQFENAYKLLDQLKER--GCIPSVVSFNSILTCLGKKRKVDEALTL 379

Query: 401 FEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
           FE +K     +   YNI++  L   G+V++A  +  +M    L  N L+ +I +    ++
Sbjct: 380 FEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKA 439

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
                A E      +    P+   Y  L  GL K G +D A  L  + L +         
Sbjct: 440 KKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENML-DTGHNANPVV 498

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           Y   I +    G  E   ++  EM + GC P+  + +  +  + K G +E+ R +F +++
Sbjct: 499 YTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIK 558

Query: 581 ERKLLTEANTIVYDEILIEHMKK 603
               L +  +     ILI  + K
Sbjct: 559 GYGFLPDVRSY---SILIHGLTK 578



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 108/429 (25%), Positives = 182/429 (42%), Gaps = 49/429 (11%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           E+ E   +  C P+   Y ++I  L  + N+D   R++E M      A+ + Y +LI   
Sbjct: 447 EMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNF 506

Query: 249 CKGGRVVRGHELFREMKENGILID--------------------RAI------------- 275
              GR   GH++F+EM   G   D                    RAI             
Sbjct: 507 FMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDV 566

Query: 276 --YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             Y +LI GL   G+  +   +   +   G+  D   YN+++ G C+  + DKAY++ E 
Sbjct: 567 RSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEE 626

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME----KLKFSVAADLEKFFEFLVG 389
                + P  +T   ++   A++ R+D  + L  + +    +L   V + L   F    G
Sbjct: 627 MKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGF----G 682

Query: 390 KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           K  RI  A  + EE+  KG + +V  +N LM AL++  E+ +AL  F  M+ +    N+ 
Sbjct: 683 KVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTY 742

Query: 449 SFSIAIQ--CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           ++SI I   C V+  +  +A     ++ +   VP+V  Y  +  GL K+G I  A  L  
Sbjct: 743 TYSILINGLCRVQKYN--KAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFE 800

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
               N  + P    +   I  +  +  A +   V  E   +GC  N   C +++  + K 
Sbjct: 801 RFKANGGT-PDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKACISLLDALNKA 859

Query: 567 GTLEEARKV 575
             LE+A  V
Sbjct: 860 ECLEQAAVV 868



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/507 (21%), Positives = 214/507 (42%), Gaps = 32/507 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRN-------NLFRAADQ-----------VPELMDSQGRIA 185
           K++G   +  S+N++  CL +         LF A  +           + +++   G++ 
Sbjct: 349 KERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVE 408

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E   I ++M      P++     M+  L   +  +    ++E   +     + + Y +LI
Sbjct: 409 EAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLI 468

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GL K G V   + LF  M + G   +  +Y  LI      G+      + K++   G +
Sbjct: 469 DGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQ 528

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            DL + N+ +  + +    +K   +FE        PD  + + L+    + G+      +
Sbjct: 529 PDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSI 588

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGAL 422
              M++  F  A D   +   + G  K  ++  A +V EE+K K    +V  Y  ++  L
Sbjct: 589 FHAMKQQGF--ALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGL 646

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            +I  + +A  LF + +   +E+N + +S  I    + G I EA     ++++    P+V
Sbjct: 647 AKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNV 706

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             +N L   L K  EI+ A++  +  +  +   P  + Y++ I  +CR  +  K      
Sbjct: 707 YTWNSLMDALVKAEEINEALICFQS-MKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQ 765

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
           EM ++G  PN V  + +I+G+ K G + +A  +F   +      +A +      LIE M 
Sbjct: 766 EMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASF---NALIEGMS 822

Query: 603 KKTADLVLSGLKFFGLESKLKAKGCKL 629
                     ++ + +  + + KGC++
Sbjct: 823 HAN-----RAIEAYHVFEETRLKGCRI 844



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 129/278 (46%), Gaps = 27/278 (9%)

Query: 136 SKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEK 193
           S  FH A KQ+G+  +  +YNA+   +C S                  G++ +  E+LE+
Sbjct: 586 SSIFH-AMKQQGFALDARAYNAVVDGFCKS------------------GKLDKAYEVLEE 626

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           M+     P V  Y ++I  LA    LD    ++EE K   +E +V+ Y +LI G  K GR
Sbjct: 627 MKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGR 686

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           +   + +  EM + G+  +   +  L++ LV   ++ +A    + + +     +   Y+ 
Sbjct: 687 IDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSI 746

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           +I GLCRV++++KA+  ++   +  L P+  T   ++   A++G + +   L    E+ K
Sbjct: 747 LINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLF---ERFK 803

Query: 374 FSVAADLEKFFEFLV---GKEERIMMALDVFEELKGKG 408
            +        F  L+       R + A  VFEE + KG
Sbjct: 804 ANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKG 841



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 3/154 (1%)

Query: 177 LMDSQGRIAEMLEIL---EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD+  +  E+ E L   + M+   C P+ + Y+ +I  L   +  +     W+EM+K  
Sbjct: 712 LMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQG 771

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  +V+ Y T+I GL K G +     LF   K NG   D A +  LIEG+    +  +A 
Sbjct: 772 LVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAY 831

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
            + ++    G R ++    S++  L + +  ++A
Sbjct: 832 HVFEETRLKGCRINVKACISLLDALNKAECLEQA 865


>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
 gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
          Length = 690

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 185/405 (45%), Gaps = 13/405 (3%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKK-DLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           DVFA+ +++  LA  R++    R++  M+    V  DV+ Y  L+ GLCK GRV     +
Sbjct: 135 DVFAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRV 194

Query: 261 FREMKENGILI--DRAIYGVLIEGLVGEGKVGKACDLLKDLVDS--GYRADLGIYNSIIG 316
              M    + I  D      +++GL   G+V +A   ++  + S  G   +   YN +I 
Sbjct: 195 LDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLID 254

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
             CRV     AY+L E    + +  +  T+N ++      GR     +   + ++  +  
Sbjct: 255 AFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFRE-KRTVWPE 313

Query: 377 AADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKAL 432
                  +  LVG       + MA+++F E   +G+S   I Y  ++  L + G ++ A 
Sbjct: 314 GKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDAC 373

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            +   M+    ++++ +++I I        + EA E   ++ E+   P V  YN L  G 
Sbjct: 374 SMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGS 433

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           CK G+  A   L+   + +    P+   +   +   C+ G+ ++ + +L  M + G  PN
Sbjct: 434 CKAGDFAAVDELLGKMIDD-GCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPN 492

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            VI + +I  +CK G ++ A ++F  ++E+ +   AN   ++ +L
Sbjct: 493 NVIYNTLIDFLCKRGDVDLAIELFDEMKEKSV--PANVTTFNALL 535



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 112/493 (22%), Positives = 219/493 (44%), Gaps = 36/493 (7%)

Query: 121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS 180
           +++++L   ++P  A++F   +        +  ++N++   L+R         VP +   
Sbjct: 105 ILSKLLARFSSPEPAARFLAASLAAGAPAPDVFAFNSILAALAR------VRDVPGM--- 155

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM-KKDL-VEADV 238
             RI  +++    +R     PDV  Y  ++  L     +   LRV + M ++DL +  DV
Sbjct: 156 -ARIYALMQGCASVR-----PDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDV 209

Query: 239 MAYVTLIMGLCKGGRVVRGHELF--REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           +   T++ GLCK GRV         R    +G   +   Y  LI+     G +  A +L+
Sbjct: 210 VTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELV 269

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF--EVTVQDDL---APDFSTVNPLLV 351
           + + + G   ++   N+I+GGLCR  +   A + F  + TV  +    A  +ST+   L+
Sbjct: 270 EKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALL 329

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY 409
               +G     F      EK+    + D   +F  + G  +  R+  A  +   +K  G+
Sbjct: 330 HTNNVGMAMELFH-----EKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGF 384

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
                 YNIL+        + +A  L  +M+ + +  +  +++  +    ++GD     E
Sbjct: 385 KLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDE 444

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
              K+I+    PSV  +  L  G CK+G+ID A+ ++R  +      P    Y   I  +
Sbjct: 445 LLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRS-MDESGIHPNNVIYNTLIDFL 503

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C+ G+ +  IE+ +EM ++  P N    +A++ G+      E+A ++   +RE +   + 
Sbjct: 504 CKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDY 563

Query: 589 NTIVYDEILIEHM 601
            T+   ++L+E +
Sbjct: 564 VTV---DVLMEWL 573



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 121/276 (43%), Gaps = 23/276 (8%)

Query: 96  FRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASY 155
           FR+ +  W P+      K   VT   +   L   NN  +A + FH   ++    H   S 
Sbjct: 304 FREKRTVW-PE-----GKGNAVTYSTLVGALLHTNNVGMAMELFH---EKMSEGH---SP 351

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           +A+ Y    + L +A           GR+ +   +   M+    K D  AY  +I     
Sbjct: 352 DAIMYFTMISGLTQA-----------GRLEDACSMASSMKEAGFKLDTKAYNILIAGFCR 400

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
           ++ L     + +EMK+  +  DV  Y TL+ G CK G      EL  +M ++G       
Sbjct: 401 KKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVIT 460

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           +G L+ G    GK+ +A  +L+ + +SG   +  IYN++I  LC+    D A +LF+   
Sbjct: 461 FGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMK 520

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           +  +  + +T N LL    +    +  F+L+ QM +
Sbjct: 521 EKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMRE 556


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 186/412 (45%), Gaps = 6/412 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I+E L+I + M      P+     ++I+       +     V EEM    +  +  ++
Sbjct: 375 GNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSF 434

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I  LC   R V      REM    +  +  +   L+ GL   GK G+A +L   L+ 
Sbjct: 435 SMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLG 494

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G+  ++   N++I GLC+     +  KL    ++  L  D  T N L+  C + G++  
Sbjct: 495 KGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKE 554

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNIL 418
            F+L  +M  +K  +  D+  F   L G    ++I  A  ++ E K  GY  +V  Y ++
Sbjct: 555 GFELKEEM--VKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVM 612

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    +  +V++   L  ++    LE+NS+ ++  I+ +  +G++  A    + +     
Sbjct: 613 IDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGV 672

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           + S A Y+ L  GLC IG +D A  L+ D +      P    Y   I    + G+  K+ 
Sbjct: 673 LLSCATYSSLMHGLCNIGLVDDAKHLL-DEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVN 731

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            VL EM+     PN+   + +I G CK G  +EA K+   + E+ +L +A T
Sbjct: 732 IVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVT 783



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/429 (22%), Positives = 193/429 (44%), Gaps = 43/429 (10%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PDV  ++ MI         D  + ++ +M+K  V  +V+ Y  +I GLCK GR+   +  
Sbjct: 254 PDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRF 313

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             +M +  +      Y V I GL+   K+ +A  +LK++ + G+  +  +YN++I G C+
Sbjct: 314 KEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCK 373

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCA-EMGRMDNF--------------- 362
           +    +A K+ +  +   ++P+  T+N L+   C + ++G+ +N                
Sbjct: 374 MGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGS 433

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLV--------------------GKEERIMMALDVFE 402
           F ++     LKF     L    E L+                    GK+     A++++ 
Sbjct: 434 FSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGE---AVELWC 490

Query: 403 ELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
            L GKG+  ++   N L+  L + G +++ L L   M    L  + ++++  I    + G
Sbjct: 491 RLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEG 550

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
            + E  E   ++++    P +  +N L  GLC   +ID A  L  +C  N    P  + Y
Sbjct: 551 KVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKN-GYVPNVYTY 609

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            + I   C++ + E+   +LNE+  +    N V+ +++I   C +G +  A ++  +++ 
Sbjct: 610 GVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKS 669

Query: 582 RKLLTEANT 590
           R +L    T
Sbjct: 670 RGVLLSCAT 678



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 110/500 (22%), Positives = 197/500 (39%), Gaps = 105/500 (21%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GR+ E     EKM +    P +  Y+  I  L     +D    V +EM +     + + 
Sbjct: 304 SGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVV 363

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI G CK G +    ++  +M   GI  +      LI+G     ++G+A ++L++++
Sbjct: 364 YNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMI 423

Query: 301 DSG-----------------------------------YRADLGIYNSIIGGLCRVKQFD 325
             G                                    R + G+  +++ GLC+  +  
Sbjct: 424 GRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQG 483

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM---------------- 369
           +A +L+   +     P+  T N L+    + G M    KLL  M                
Sbjct: 484 EAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLI 543

Query: 370 -----------------EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY- 409
                            E +K  +  D+  F   L G    ++I  A  ++ E K  GY 
Sbjct: 544 SGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYV 603

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
            +V  Y +++    +  +V++   L  ++    LE+NS+ ++  I+ +  +G++  A   
Sbjct: 604 PNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRL 663

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-----------CLGNVASG--- 515
            + +     + S A Y+ L  GLC IG +D A  L+ +           C   +  G   
Sbjct: 664 RDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSK 723

Query: 516 --------------------PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
                               P +F Y + I   C+ G+ ++  ++LNEMT++G  P+ V 
Sbjct: 724 LGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVT 783

Query: 556 CSAIISGMCKHGTLEEARKV 575
            +A  +G+CK G +EEA KV
Sbjct: 784 YNAFTNGLCKEGKVEEAFKV 803



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 166/374 (44%), Gaps = 3/374 (0%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           I E + RNL +P+    T ++  L         + +W  +       +++    LI GLC
Sbjct: 454 IREMLLRNL-RPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLC 512

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K G +    +L R+M E G++ DR  Y  LI G   EGKV +  +L +++V  G + D+ 
Sbjct: 513 KAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIY 572

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            +N ++ GLC   + D+A +L+    ++   P+  T   ++    +  +++    LL ++
Sbjct: 573 TFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNEL 632

Query: 370 EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEV 428
              K  + + +             +  A  + +++K +G   S   Y+ LM  L  IG V
Sbjct: 633 VSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLV 692

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
             A +L  +MR   L  N + ++  I  + + G + +      ++   +  P+   Y  +
Sbjct: 693 DDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIM 752

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
             G CK+G+   A  L+ + +      P    Y      +C+ G+ E+  +V +EM+   
Sbjct: 753 IDGFCKLGKTKEAAKLLNE-MTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGA 811

Query: 549 CPPNEVICSAIISG 562
              +E+  + +I G
Sbjct: 812 VCLDEITYTTLIDG 825



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 122/562 (21%), Positives = 218/562 (38%), Gaps = 97/562 (17%)

Query: 126 LKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA---------DQVPE 176
           LK   NP  A  FFH+  +   ++    SY  L + L  N+L   A          +VP 
Sbjct: 94  LKSNVNPKTALNFFHFVSETCKFRFTARSYCVLIHLLVGNDLLSPARLLLIRLIDGKVPA 153

Query: 177 LM-----DSQGRIAEML----------------EILEKMRRNLCKPDVFAYTAMIRVLAA 215
                       IA+++                ++L  +     K   F + A +  L A
Sbjct: 154 FYARNFESRHFEIAQIMADFNLVFEPVIGVKIADLLVHVYSTQFKHLGFGFAADVFSLLA 213

Query: 216 ERNLDACLRVWEEMKKDLVEA--------------------DVMAYVTLIMGLCKGGRVV 255
           ++ L   L+    +   LV+A                    DV  + T+I   CKG R  
Sbjct: 214 KKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHRED 273

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
               LF +M++ G+  +   Y  +I GL   G++ +A    + +V       L  Y+  I
Sbjct: 274 DAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFI 333

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            GL ++++ D+A  + +   +    P+    N L+    +MG +    K+   M  L   
Sbjct: 334 NGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDM--LSKG 391

Query: 376 VAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI----YNILMGALLEIGEVK 429
           ++ +       + G  K ++I  A +V EE+ G+G   +PI    +++++  L       
Sbjct: 392 ISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRG---LPINQGSFSMVINWLCLKFRFV 448

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
            AL+   +M   NL  N    +  +    ++G   EA E   +++    VP++   N L 
Sbjct: 449 TALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALI 508

Query: 490 KGLCKIGEIDAAMMLVRDCL---------------------GNVASG------------- 515
            GLCK G +   + L+RD L                     G V  G             
Sbjct: 509 HGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQ 568

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P  + + L +  +C + + ++   + +E  + G  PN      +I G CK   +EE   +
Sbjct: 569 PDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENL 628

Query: 576 FTNLRERKLLTEANTIVYDEIL 597
              L  +KL  E N++VY+ ++
Sbjct: 629 LNELVSKKL--ELNSVVYNSLI 648



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 126/284 (44%), Gaps = 12/284 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ E  E+ E+M +   +PD++ +  ++  L     +D   R+W E KK+    +V  
Sbjct: 549 EGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYT 608

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G CK  +V  G  L  E+    + ++  +Y  LI      G +  A  L  D+ 
Sbjct: 609 YGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMK 668

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G       Y+S++ GLC +   D A  L +   ++ L P+      ++   +++G+M+
Sbjct: 669 SRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMN 728

Query: 361 NFFKLLAQMEKL-----KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPI 414
               +L +M        KF+    ++ F +    KE     A  +  E+  KG       
Sbjct: 729 KVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKE-----AAKLLNEMTEKGILPDAVT 783

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ-CH 457
           YN     L + G+V++A  +  +M    + ++ ++++  I  CH
Sbjct: 784 YNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLIDGCH 827



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 98/207 (47%), Gaps = 20/207 (9%)

Query: 151 NFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTA 208
           N   YN+L  AYC++ N    AA ++ + M S+G +                     Y++
Sbjct: 640 NSVVYNSLIRAYCINGN--MNAAFRLRDDMKSRGVLL----------------SCATYSS 681

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           ++  L     +D    + +EM+K+ +  +V+ Y T+I G  K G++ + + + +EM  + 
Sbjct: 682 LMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHN 741

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
           I  ++  Y ++I+G    GK  +A  LL ++ + G   D   YN+   GLC+  + ++A+
Sbjct: 742 IHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAF 801

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAE 355
           K+ +      +  D  T   L+  C +
Sbjct: 802 KVCDEMSSGAVCLDEITYTTLIDGCHQ 828


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 116/512 (22%), Positives = 214/512 (41%), Gaps = 48/512 (9%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNL----FRAADQVPE---LMD------------SQGRI 184
           K  GY+ +  +YNAL   LS        FR   ++ E    MD             +GR 
Sbjct: 32  KDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRW 91

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           A+ L+++E   R   K D    T MI  L      D  +     M+ +    +V+ Y TL
Sbjct: 92  ADALDMIE---REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTL 148

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + G  K  ++     +   M   G   + +++  L+     E     A  LL  +   G 
Sbjct: 149 LSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGC 208

Query: 305 RADLGIYNSIIGGLCRVKQ------FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
                +YN  IG +C  ++       D A K++   +  +   +   V     C   +G+
Sbjct: 209 PPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGK 268

Query: 359 MDNFFKLLAQMEKLKFSV-AADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYN 416
            D  F+L+ +M +  F    +   K   FL     ++  A  +F+E+K  G +  V  Y 
Sbjct: 269 FDKAFQLIKEMMRKGFVPDTSTYSKVITFLC-HATKVEKAFLLFQEMKMVGVTPDVYTYT 327

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+ +  + G +++A +LF +MR +      ++++  I  ++++  + +A +  +++++ 
Sbjct: 328 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 387

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF---------------KY 521
              P+   Y  L  GLCK G I  A  +    +G   S  ++F                Y
Sbjct: 388 GCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTY 447

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              +  +C++ + +   E+L+ M   GC PN ++  A+I G CK G ++ A++VF  + +
Sbjct: 448 GALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTK 507

Query: 582 RKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
              L   +T  Y  ++    K    DL +  L
Sbjct: 508 CGYLPSVHT--YTSLIDRMFKDGRLDLAMKVL 537



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 180/420 (42%), Gaps = 57/420 (13%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  +  +++++M R    PD   Y+ +I  L     ++    +++EMK   V  DV  Y
Sbjct: 267 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 326

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI   CK G + +   LF EM+  G       Y  LI   +   +V +A D+   +VD
Sbjct: 327 TILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVD 386

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G R +   Y +++ GLC+     KA++++                              
Sbjct: 387 AGCRPNDVTYGALVDGLCKAGNISKAFEVYA----------------------------- 417

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
             KL+        S +AD + +F      E+R  +A             +V  Y  L+  
Sbjct: 418 --KLIGT------SDSADSDFYFPC----EDRHTLA------------PNVVTYGALVDG 453

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L +  +V  A  L   M     E N + +   I    ++G I  A E   ++ +   +PS
Sbjct: 454 LCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPS 513

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V  Y  L   + K G +D AM ++   L +  + P    Y   I  +CR GE+EK +++L
Sbjct: 514 VHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT-PNVVTYTAMIDGLCRIGESEKALKLL 572

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
           + M ++GC PN V  +A+I G+ K G ++ +  +FT +  +      N + Y  +LI H+
Sbjct: 573 SLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG--CSPNYVTY-RVLINHL 629



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 118/508 (23%), Positives = 209/508 (41%), Gaps = 49/508 (9%)

Query: 113 KLRRVTPDLVAEVLKVENNPTLA----SKFFHWAGKQKGYKHNFASYNALAYCLSRNNLF 168
           K+  VTPD+    + +++         +++     +  G      +Y AL +       +
Sbjct: 315 KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHA------Y 368

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
             A QVP+  D          I  +M    C+P+   Y A++  L    N+     V+ +
Sbjct: 369 LKAKQVPQAND----------IFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAK 418

Query: 229 M--KKDLVEAD--------------VMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           +    D  ++D              V+ Y  L+ GLCK  +V   HEL   M  +G   +
Sbjct: 419 LIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPN 478

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
             +Y  LI+G    GK+  A ++   +   GY   +  Y S+I  + +  + D A K+  
Sbjct: 479 HIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLS 538

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392
             ++D   P+  T   ++     +G  +   KLL+ ME+   S            +GK  
Sbjct: 539 QMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAG 598

Query: 393 RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
           +I ++LD+F ++  KG S +   Y +L+  L   G + KA  L G+M+          + 
Sbjct: 599 KIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYR 658

Query: 452 IAIQ----CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
            AIQ      + S  ILE  E +        VP    Y  L     K G ++ AM L ++
Sbjct: 659 CAIQGFSKSFIASLGILEEMESYG------TVPIAPVYGMLIDCFSKAGRLEIAMELHKE 712

Query: 508 CLGNVASGPTEFK-YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
            +   +S  T+   YA  I  +C + + E+   + +EMT+ G  P   +   +I G+ + 
Sbjct: 713 MMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEV 772

Query: 567 GTLEEARKVFTNL-RERKLLTEANTIVY 593
              +EA ++   +  E  LL    T ++
Sbjct: 773 KKWDEALQLCYGICHEVGLLLSYTTQIF 800



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/352 (19%), Positives = 144/352 (40%), Gaps = 21/352 (5%)

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +K+ G    +  Y  L++ L   G+V     + K++ +SG+  D          LC+  +
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           +  A  + E   ++D   D      ++    E    D     L +M     S   ++  +
Sbjct: 91  WADALDMIE---REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMR--CNSCIPNVVTY 145

Query: 384 FEFLVG--KEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKKALYLFGKMRG 440
              L G  K++++     +   +  +G +  P ++N L+ +     +   A  L  +M  
Sbjct: 146 RTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTT 205

Query: 441 LNLEVNSLSFSIAI-----QCHVESGDILEACE-CHNKIIEMSQVPSVAAYNCLTKGLCK 494
                  + ++I I     Q  + S D+L+  E  + +++  + V +        + LC 
Sbjct: 206 CGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCG 265

Query: 495 IGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           +G+ D A  L+++ +  G V   P    Y+  I  +C + + EK   +  EM   G  P+
Sbjct: 266 VGKFDKAFQLIKEMMRKGFV---PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPD 322

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
               + +I   CK G +E+A+ +F  +R   +      + Y  ++  ++K K
Sbjct: 323 VYTYTILIDSFCKAGLIEQAQWLFEEMRS--VGCSPTVVTYTALIHAYLKAK 372


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 117/475 (24%), Positives = 224/475 (47%), Gaps = 26/475 (5%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           SY  +   LS N +  A  +  + +    +IAE   I ++M  +   P+V+ Y  +IR  
Sbjct: 160 SYGFMPGVLSYNAILDAVIRTKQSV----KIAE--GIFKEMVESGVSPNVYTYNILIRGF 213

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
               NL+  L  + EM+++    +V+ Y T+I   CK  ++    +L R M   G+  + 
Sbjct: 214 CTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNL 273

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             Y V+I GL  EG++ +  ++L+++    Y  D   +N++I G C V  F +A  L   
Sbjct: 274 ISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAE 333

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER 393
            V++ L+P+  T   L+    + G ++   + L QM      +  +   +   + G  ++
Sbjct: 334 MVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR--GLHPNGRTYTTLIDGFSQQ 391

Query: 394 --IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSL 448
             +  A  + +E+   G++ ++  YN L+     +G ++ A  L  +M  RG   +V  +
Sbjct: 392 GFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDV--V 449

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           S+S  I     + ++ +A +   +++     P VA Y+ L +GLCK   +     L ++ 
Sbjct: 450 SYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEM 509

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
           L ++   P E  Y   I   C  G+ +K + + +EM Q+G  P+ V  + +I+G  K   
Sbjct: 510 L-SLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSR 568

Query: 569 LEEARKVFTNLRERKLLTEA---NTIVYDEIL--IEHMKKKTADLVLSGLKFFGL 618
            +EA+++       KLL E    N I Y+ ++    +++ K+A  ++ G    GL
Sbjct: 569 TKEAKRLLL-----KLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGL 618



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 106/470 (22%), Positives = 189/470 (40%), Gaps = 82/470 (17%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-------------------GRIAE 186
           KG   N  SYN +   L R    +   ++ E M  +                   G   +
Sbjct: 267 KGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQ 326

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
            L +  +M +N   P+V  YT +I  +    NL+  +   ++M+   +  +   Y TLI 
Sbjct: 327 ALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLID 386

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           G  + G + + +++ +EM ENG       Y  LI G    G++  A  LL+++++ G+  
Sbjct: 387 GFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIP 446

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFK 364
           D+  Y++II G CR ++ +KA++L    V   ++PD +T + L+  +C            
Sbjct: 447 DVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLC------------ 494

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALL 423
                                    K+ R+    D+F+E+   G     + Y  L+ A  
Sbjct: 495 -------------------------KQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYC 529

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
             G++ KAL L  +M       + +++++ I    +     EA     K++    VP+  
Sbjct: 530 IEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEI 589

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH-VCRSGEAEKIIEVLN 542
            YN                 L+ +C         EFK AL ++   C  G   +   VL 
Sbjct: 590 TYNT----------------LIDNC------NNLEFKSALALMKGFCMKGLMNEADRVLE 627

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
            M Q+G   NE + + II G  K G +E+A  ++  +        + TI+
Sbjct: 628 SMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIM 677


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 179/392 (45%), Gaps = 2/392 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ +  E +  M     KP+V +Y  +I   ++  N++   R+ + M+   +E D   
Sbjct: 262 EGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYT 321

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI G+CK GR+     LF +M E G++ +   Y  LI+G   +G + +A     ++V
Sbjct: 322 YGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV 381

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G    +  YN ++  L    +  +A  + +   +  + PD  T N L+   +  G   
Sbjct: 382 KKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAK 441

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
             F L  +M                +++ +  R+  A D+FE++  +G S  V ++N ++
Sbjct: 442 KAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMV 501

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
                 G V++A  L  +M   ++  + ++F+  +Q     G + EA    +++      
Sbjct: 502 DGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIK 561

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P   +YN L  G  + G+I  A   VRD + ++   PT   Y   I  +C++ E +   E
Sbjct: 562 PDHISYNTLISGYGRRGDIKDAFR-VRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEE 620

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
           +L EM  +G  P++    ++I GM    TL E
Sbjct: 621 LLKEMVNKGISPDDSTYLSLIEGMGNVDTLVE 652



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 171/394 (43%), Gaps = 2/394 (0%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  E  +    M+     P +     M+ +      ++    ++ EM +  + + V  + 
Sbjct: 194 RADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFN 253

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++  LCK G++ +  E    M+  G   +   Y  +I G    G +  A  +L  +   
Sbjct: 254 IMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVK 313

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D   Y S+I G+C+  + ++A  LF+  V+  L P+  T N L+      G ++  
Sbjct: 314 GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 373

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGA 421
           F    +M K     +          +  E R+  A D+ +E++ KG     I YNIL+  
Sbjct: 374 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 433

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
               G  KKA  L  +M    +E   ++++  I        + EA +   KI++    P 
Sbjct: 434 YSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPD 493

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V  +N +  G C  G ++ A ML+++ +   +  P E  +   +   CR G+ E+   +L
Sbjct: 494 VIMFNAMVDGHCANGNVERAFMLLKE-MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLL 552

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           +EM + G  P+ +  + +ISG  + G +++A +V
Sbjct: 553 DEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRV 586



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 159/375 (42%), Gaps = 10/375 (2%)

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V+ +  M+ VL  E  L         M+    + +V++Y T+I G    G +     +  
Sbjct: 249 VYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILD 308

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            M+  GI  D   YG LI G+  EG++ +A  L   +V+ G   +   YN++I G C   
Sbjct: 309 AMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKG 368

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
             ++A+   +  V+  + P  ST N L+      GRM     ++ +M K      A    
Sbjct: 369 DLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAIT-- 426

Query: 383 FFEFLVGKEER---IMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKM 438
            +  L+    R      A D+  E+  KG     + Y  L+  L     +K+A  LF K+
Sbjct: 427 -YNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKI 485

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
               +  + + F+  +  H  +G++  A     ++   S  P    +N L +G C+ G++
Sbjct: 486 LDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKV 545

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           + A ML+ D +      P    Y   I    R G+ +    V +EM   G  P  +  +A
Sbjct: 546 EEARMLL-DEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNA 604

Query: 559 IISGMCKH--GTLEE 571
           +I  +CK+  G L E
Sbjct: 605 LIKCLCKNQEGDLAE 619



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 19/218 (8%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            KG +    +Y +L Y LSR N  + AD + E +  QG                  PDV 
Sbjct: 452 SKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQG----------------VSPDVI 495

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            + AM+    A  N++    + +EM +  V  D + + TL+ G C+ G+V     L  EM
Sbjct: 496 MFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEM 555

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K  GI  D   Y  LI G    G +  A  +  +++  G+   L  YN++I  LC+ ++ 
Sbjct: 556 KRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEG 615

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           D A +L +  V   ++PD ST   L+     MG +D  
Sbjct: 616 DLAEELLKEMVNKGISPDDSTYLSLI---EGMGNVDTL 650



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 105/273 (38%), Gaps = 75/273 (27%)

Query: 305 RADLGIYNSIIGGL-----CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           R  L + +SI+  L     C +++ D+A+K F +  +  + P   T N +L    ++ RM
Sbjct: 171 RDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRM 230

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
           +  + L A+M +L+ S                                  S+V  +NI++
Sbjct: 231 EMAWVLYAEMFRLRIS----------------------------------STVYTFNIMV 256

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L + G++KKA    G M GL  +                                   
Sbjct: 257 NVLCKEGKLKKAREFIGFMEGLGFK----------------------------------- 281

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+V +YN +  G    G I+ A  ++ D +      P  + Y   I  +C+ G  E+   
Sbjct: 282 PNVVSYNTIIHGYSSRGNIEGARRIL-DAMRVKGIEPDSYTYGSLISGMCKEGRLEEASG 340

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           + ++M + G  PN V  + +I G C  G LE A
Sbjct: 341 LFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 373



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 9/120 (7%)

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLG---NVASGPTEFKYALTILHVCRSGEAEKI 537
           +V  +N +   LCK G++  A    R+ +G    +   P    Y   I      G  E  
Sbjct: 248 TVYTFNIMVNVLCKEGKLKKA----REFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGA 303

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             +L+ M  +G  P+     ++ISGMCK G LEEA  +F  + E  L+   N + Y+ ++
Sbjct: 304 RRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLV--PNAVTYNTLI 361


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 116/512 (22%), Positives = 214/512 (41%), Gaps = 48/512 (9%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNL----FRAADQVPE---LMD------------SQGRI 184
           K  GY+ +  +YNAL   LS        FR   ++ E    MD             +GR 
Sbjct: 32  KDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRW 91

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           A+ L+++E   R   K D    T MI  L      D  +     M+ +    +V+ Y TL
Sbjct: 92  ADALDMIE---REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTL 148

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + G  K  ++     +   M   G   + +++  L+     E     A  LL  +   G 
Sbjct: 149 LSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGC 208

Query: 305 RADLGIYNSIIGGLCRVKQ------FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
                +YN  IG +C  ++       D A K++   +  +   +   V     C   +G+
Sbjct: 209 PPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGK 268

Query: 359 MDNFFKLLAQMEKLKF-SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYN 416
            D  F+L+ +M +  F    +   K   FL     ++  A  +F+E+K  G +  V  Y 
Sbjct: 269 FDKAFQLIKEMMRKGFVPDTSTYSKVITFLC-HATKVEKAFLLFQEMKMVGVTPDVYTYT 327

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+ +  + G +++A +LF +MR +      ++++  I  ++++  + +A +  +++++ 
Sbjct: 328 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 387

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF---------------KY 521
              P+   Y  L  GLCK G I  A  +    +G   S  ++F                Y
Sbjct: 388 GCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTY 447

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              +  +C++ + +   E+L+ M   GC PN ++  A+I G CK G ++ A++VF  + +
Sbjct: 448 GALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTK 507

Query: 582 RKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
              L   +T  Y  ++    K    DL +  L
Sbjct: 508 CGYLPSVHT--YTSLIDRMFKDGRLDLAMKVL 537



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 180/420 (42%), Gaps = 57/420 (13%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  +  +++++M R    PD   Y+ +I  L     ++    +++EMK   V  DV  Y
Sbjct: 267 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 326

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI   CK G + +   LF EM+  G       Y  LI   +   +V +A D+   +VD
Sbjct: 327 TILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVD 386

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G R +   Y +++ GLC+     KA++++                              
Sbjct: 387 AGCRPNDVTYGALVDGLCKAGNISKAFEVYA----------------------------- 417

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
             KL+        S +AD + +F      E+R  +A             +V  Y  L+  
Sbjct: 418 --KLIGT------SDSADSDFYFPC----EDRHTLA------------PNVVTYGALVDG 453

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L +  +V  A  L   M     E N + +   I    ++G I  A E   ++ +   +PS
Sbjct: 454 LCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPS 513

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V  Y  L   + K G +D AM ++   L +  + P    Y   I  +CR GE+EK +++L
Sbjct: 514 VHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT-PNVVTYTAMIDGLCRIGESEKALKLL 572

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
           + M ++GC PN V  +A+I G+ K G ++ +  +FT +  +      N + Y  +LI H+
Sbjct: 573 SLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG--CSPNYVTY-RVLINHL 629



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 202/489 (41%), Gaps = 48/489 (9%)

Query: 113 KLRRVTPDLVAEVLKVENNPTLA----SKFFHWAGKQKGYKHNFASYNALAYCLSRNNLF 168
           K+  VTPD+    + +++         +++     +  G      +Y AL +       +
Sbjct: 315 KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHA------Y 368

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
             A QVP+  D          I  +M    C+P+   Y A++  L    N+     V+ +
Sbjct: 369 LKAKQVPQAND----------IFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAK 418

Query: 229 M--KKDLVEAD--------------VMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           +    D  ++D              V+ Y  L+ GLCK  +V   HEL   M  +G   +
Sbjct: 419 LIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPN 478

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
             +Y  LI+G    GK+  A ++   +   GY   +  Y S+I  + +  + D A K+  
Sbjct: 479 HIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLS 538

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392
             ++D   P+  T   ++     +G  +   KLL+ ME+   S            +GK  
Sbjct: 539 QMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAG 598

Query: 393 RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
           +I ++LD+F ++  KG S +   Y +L+  L   G + KA  L G+M+          + 
Sbjct: 599 KIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYR 658

Query: 452 IAIQ----CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
            AIQ      + S  ILE  E +        VP    Y  L     K G ++ AM L ++
Sbjct: 659 CAIQGFSKSFIASLGILEEMESYG------TVPIAPVYGMLIDCFSKAGRLEIAMELHKE 712

Query: 508 CLGNVASGPTEFK-YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
            +   +S  T+   YA  I  +C + + E+   + +EMT+ G  P   +   +I G+ + 
Sbjct: 713 MMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEV 772

Query: 567 GTLEEARKV 575
              +EA ++
Sbjct: 773 KKWDEALQL 781



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 100/444 (22%), Positives = 193/444 (43%), Gaps = 37/444 (8%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L+DS    G I +   + E+MR   C P V  YTA+I      + +     ++  M    
Sbjct: 329 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 388

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREM----------------KENGILIDRAIYG 277
              + + Y  L+ GLCK G + +  E++ ++                  + +  +   YG
Sbjct: 389 CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYG 448

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
            L++GL    KV  A +LL  ++ SG   +  +Y+++I G C+  + D A ++F    + 
Sbjct: 449 ALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKC 508

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL-----VGKEE 392
              P   T   L+    + GR+D   K+L+QM  LK S   ++  +   +     +G+ E
Sbjct: 509 GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQM--LKDSCTPNVVTYTAMIDGLCRIGESE 566

Query: 393 RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
           + +  L + EE   KG S +V  Y  L+  L + G++  +L LF +M       N +++ 
Sbjct: 567 KALKLLSLMEE---KGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYR 623

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPS-VAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           + I  H+ +  +L+        ++ +  P  +  Y C  +G  K       ++   +  G
Sbjct: 624 VLIN-HLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYG 682

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ--EGCPPNEVICSAIISGMCKHGT 568
            V   P    Y + I    ++G  E  +E+  EM +       +  + +++I  +C    
Sbjct: 683 TVPIAPV---YGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQ 739

Query: 569 LEEARKVFTNLRERKLLTEANTIV 592
           +EEA ++++ +  R  + E +  V
Sbjct: 740 VEEAFRLYSEMTRRGFVPELSVFV 763



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/352 (19%), Positives = 144/352 (40%), Gaps = 21/352 (5%)

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +K+ G    +  Y  L++ L   G+V     + K++ +SG+  D          LC+  +
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           +  A  + E   ++D   D      ++    E    D     L +M     S   ++  +
Sbjct: 91  WADALDMIE---REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMR--CNSCIPNVVTY 145

Query: 384 FEFLVG--KEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKKALYLFGKMRG 440
              L G  K++++     +   +  +G +  P ++N L+ +     +   A  L  +M  
Sbjct: 146 RTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTT 205

Query: 441 LNLEVNSLSFSIAI-----QCHVESGDILEACE-CHNKIIEMSQVPSVAAYNCLTKGLCK 494
                  + ++I I     Q  + S D+L+  E  + +++  + V +        + LC 
Sbjct: 206 CGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCG 265

Query: 495 IGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           +G+ D A  L+++ +  G V   P    Y+  I  +C + + EK   +  EM   G  P+
Sbjct: 266 VGKFDKAFQLIKEMMRKGFV---PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPD 322

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
               + +I   CK G +E+A+ +F  +R   +      + Y  ++  ++K K
Sbjct: 323 VYTYTILIDSFCKAGLIEQAQWLFEEMRS--VGCSPTVVTYTALIHAYLKAK 372



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK--DLVEADVMAYVTLI 245
           L ILE+M      P    Y  +I   +    L+  + + +EM +    V+ D   Y +LI
Sbjct: 672 LGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLI 731

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
             LC   +V     L+ EM   G + + +++  LI+GLV   K  +A  L   +   G
Sbjct: 732 QALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEG 789


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 192/449 (42%), Gaps = 41/449 (9%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P +  Y  +I         D  L +   + K+ +  D  +Y +LI G  K G V + H L
Sbjct: 12  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCL 70

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F EM E G+L    I   +I+ L    ++ KA  +++ +VDSG   DL  Y+ II GLC+
Sbjct: 71  FLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCK 130

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            K  DKA ++ E  V+    P+  T N L+   +  G  +   ++  QM         D 
Sbjct: 131 SKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDN 190

Query: 381 EKFFEFLVGKEERIMMALDVFEE--LKG------------KGYSSVP------------- 413
              F   + K  R   A  +F+   LKG             GY++               
Sbjct: 191 CNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNL 250

Query: 414 -----------IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
                      ++NIL+ A    G + KA+ +F  M+   +  ++++F+  I      G 
Sbjct: 251 MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGR 310

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
           + +A    N ++++   PS A Y CL +G C  GE+  A  L+ + +      P    ++
Sbjct: 311 LDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFS 370

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             I ++C+ G   +  ++++ M Q G  PN V  ++++ G C  G +EEA  +   +   
Sbjct: 371 SIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASI 430

Query: 583 KLLTEANTIVYDEILIEHMKKKTADLVLS 611
            +  E N  +Y  ++  + K    D  L+
Sbjct: 431 GI--EPNCYIYGTLVDGYCKNGRIDDALT 457



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 168/400 (42%), Gaps = 38/400 (9%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           +A++  I   M      P+   +  +I   A    +D  + ++E+M+   +  D + + T
Sbjct: 241 LADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 300

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I  LC+ GR+      F  M + G+    A+YG LI+G    G++ KA +L+ ++++  
Sbjct: 301 VISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKD 360

Query: 304 Y-RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
                +  ++SII  LC+  +  +   + ++ VQ    P+  T N L+     +G M+  
Sbjct: 361 IPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEA 420

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422
           F LL  M                  +G E                   +  IY  L+   
Sbjct: 421 FALLDAMAS----------------IGIE------------------PNCYIYGTLVDGY 446

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            + G +  AL +F  M    ++  S+ +SI +    ++     A +  +++IE     S+
Sbjct: 447 CKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSI 506

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLG-NVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
             Y  +  GLC+    D A ML+      NV      F   ++ +   + G  ++  E+ 
Sbjct: 507 HTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMF--KVGRRQEAKELF 564

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           + ++  G  PN    S +I+ + K  + EEA  +F ++ +
Sbjct: 565 DAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEK 604



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 142/315 (45%), Gaps = 28/315 (8%)

Query: 161 CLSRNNLFRAADQVPELMDS-------------------QGRIAEMLEILEKMRRNLCKP 201
           C +   L +A + + E+M+                    +GR+AE  +I++ M +   +P
Sbjct: 340 CCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRP 399

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +V  + +++       N++    + + M    +E +   Y TL+ G CK GR+     +F
Sbjct: 400 NVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVF 459

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           R+M   G+     +Y +++ GL    +   A  +  ++++SG    +  Y  ++GGLCR 
Sbjct: 460 RDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRN 519

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
              D+A  L E     ++  D  T N ++    ++GR     +L   +    + +  +++
Sbjct: 520 NCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAIS--TYGLVPNIQ 577

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKKA---LYLF 435
            +   +    KEE    A ++F  ++  G++S   + N ++  LL   EV KA   L + 
Sbjct: 578 TYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSII 637

Query: 436 GKMRGLNLEVNSLSF 450
           G+   L LE +++S 
Sbjct: 638 GE-NNLTLEASTISL 651


>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 125/511 (24%), Positives = 216/511 (42%), Gaps = 96/511 (18%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G+  N  ++N L   L RN                    + + +L +MRRN   PDVF
Sbjct: 135 KRGFAFNVYNHNILLKGLCRN----------------LECGKAVSLLREMRRNSLMPDVF 178

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMK-------------------------------KDL 233
           +Y  +IR     + L+  L +  EMK                               K++
Sbjct: 179 SYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEM 238

Query: 234 ----VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
               +EAD++ Y +LI G C  G + RG  LF E+ E G       Y  LI G    G++
Sbjct: 239 KFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQL 298

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            +A ++ + +++ G R ++  Y  +I GLC V +  +A +   + ++ D  P+  T N +
Sbjct: 299 KEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNII 358

Query: 350 L--VC----------------------------------CAEMGRMDNFFKLLAQMEKLK 373
           +  +C                                  CA+ G +D   KLL  M K  
Sbjct: 359 INKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAK-GDLDEASKLLYLMLKDS 417

Query: 374 FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGK-GYSSVPIYNILMGALLEIGEVKK 430
                D+  +   + G  KE R+  ALD+++ L  K G       NIL+ + L+ G+V K
Sbjct: 418 SYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNK 477

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESG--DILEACECHNKIIEMSQVPSVAAYNCL 488
           A+ L+ ++    +  NS +++  I    ++G  ++ +   C  ++ E+   PSV  YNCL
Sbjct: 478 AMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQ--PSVFDYNCL 535

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
              LCK G +D A  L  + +    + P    + + I    ++G+ +    +L  M++ G
Sbjct: 536 LSSLCKEGSLDQAWRLFEE-MQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAG 594

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             P+    S +I+   K G L+EA   F  +
Sbjct: 595 LSPDLFTYSKLINRFLKLGYLDEAISFFDKM 625



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 194/445 (43%), Gaps = 41/445 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E +  L++M+    + D+  YT++IR       LD    +++E+ +       + Y
Sbjct: 226 GKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITY 285

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G CK G++    E+F  M E G+  +   Y  LI+GL G GK  +A   L  +++
Sbjct: 286 NTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIE 345

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                +   YN II  LC+      A ++ E+  +    PD  T N LL      G +D 
Sbjct: 346 KDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDE 405

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGK-GYSSVPIYNIL 418
             KLL  M K       D+  +   + G  KE R+  ALD+++ L  K G       NIL
Sbjct: 406 ASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNIL 465

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG--DILEACECHNKIIEM 476
           + + L+ G+V KA+ L+ ++    +  NS +++  I    ++G  ++ +   C  ++ E+
Sbjct: 466 LNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSEL 525

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC---------------------LGNVASG 515
              PSV  YNCL   LCK G +D A  L  +                       G++ S 
Sbjct: 526 Q--PSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSA 583

Query: 516 -------------PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
                        P  F Y+  I    + G  ++ I   ++M   G  P+  IC +++  
Sbjct: 584 ESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKY 643

Query: 563 MCKHGTLEEARKVFTNLRERKLLTE 587
               G  ++  ++   L ++ ++ +
Sbjct: 644 CISQGETDKLTELVKKLVDKDIVLD 668



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 158/347 (45%), Gaps = 43/347 (12%)

Query: 256 RGHEL----FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           R HEL    +R+M E    I+      L+E  V   K G A  +L  ++  G+  ++  +
Sbjct: 86  RNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNH 145

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N ++ GLCR  +  KA  L     ++ L PD  + N ++                     
Sbjct: 146 NILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVI--------------------- 184

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKK 430
             F    +LEK              AL++  E+KG G S S+  + IL+ A  + G++ +
Sbjct: 185 RGFCEGKELEK--------------ALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDE 230

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A+    +M+ + LE + + ++  I+   + G++       ++++E    P    YN L +
Sbjct: 231 AMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIR 290

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           G CK+G++  A  +  + +      P  + Y   I  +C  G+ ++ ++ LN M ++   
Sbjct: 291 GFCKLGQLKEASEIF-EFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEE 349

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           PN V  + II+ +CK G + +A ++   +++R+  T  + I Y+ +L
Sbjct: 350 PNAVTYNIIINKLCKDGLVADAVEIVELMKKRR--TRPDNITYNILL 394



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 154/326 (47%), Gaps = 12/326 (3%)

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M + G   +   + +L++GL    + GKA  LL+++  +    D+  YN++I G C  K+
Sbjct: 133 MLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKE 192

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            +KA +L         +    T   L+    + G+MD     L +M+ +   + ADL  +
Sbjct: 193 LEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFM--GLEADLVVY 250

Query: 384 FEFLVGKEE--RIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKM-- 438
              + G  +   +     +F+E+  +G S   I YN L+    ++G++K+A  +F  M  
Sbjct: 251 TSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIE 310

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
           RG+   V + +  I   C V  G   EA +  N +IE  + P+   YN +   LCK G +
Sbjct: 311 RGVRPNVYTYTGLIDGLCGV--GKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLV 368

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG--CPPNEVIC 556
             A+ +V + +    + P    Y + +  +C  G+ ++  ++L  M ++     P+ +  
Sbjct: 369 ADAVEIV-ELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISY 427

Query: 557 SAIISGMCKHGTLEEARKVFTNLRER 582
           +A+I G+CK   L +A  ++  L E+
Sbjct: 428 NALIHGLCKENRLHQALDIYDLLVEK 453



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 118/287 (41%), Gaps = 25/287 (8%)

Query: 108 VTELSKLRRVTPD-----LVAEVLKVENNPTLASKFFHWAGKQKGYKH-NFASYNALAYC 161
           + EL K RR  PD     ++   L  + +   ASK  +   K   Y   +  SYNAL + 
Sbjct: 374 IVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHG 433

Query: 162 LSRNNLFRAADQVPELMDSQ-------------------GRIAEMLEILEKMRRNLCKPD 202
           L + N    A  + +L+  +                   G + + +E+ +++  +    +
Sbjct: 434 LCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRN 493

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
              YTAMI        L+    +  +M+   ++  V  Y  L+  LCK G + +   LF 
Sbjct: 494 SDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFE 553

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EM+ +    D   + ++I+G +  G +  A  LL  +  +G   DL  Y+ +I    ++ 
Sbjct: 554 EMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLG 613

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
             D+A   F+  V     PD    + +L  C   G  D   +L+ ++
Sbjct: 614 YLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKL 660



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 3/184 (1%)

Query: 162 LSRNNLFRAADQVPELMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
           +S + + R +D    ++D     G +     +L KMR +  +P VF Y  ++  L  E +
Sbjct: 485 ISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGS 544

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
           LD   R++EEM++D    DV+++  +I G  K G +     L   M   G+  D   Y  
Sbjct: 545 LDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSK 604

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           LI   +  G + +A      +VDSG+  D  I +S++       + DK  +L +  V  D
Sbjct: 605 LINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKD 664

Query: 339 LAPD 342
           +  D
Sbjct: 665 IVLD 668


>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 114/442 (25%), Positives = 203/442 (45%), Gaps = 23/442 (5%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E    +++M R+ C+P+V  Y ++I    +  ++    +V   M +  +  +   
Sbjct: 269 EGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRT 328

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK G++ +  +L   M E  + +D  +YGVLI      G+V  A  +   ++
Sbjct: 329 YTLLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAML 388

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD-DLAPDFSTVNPLLVCCAEMGRM 359
             G + +  I NS+I G C++   +KA ++  V+++D +L PD    N LL    +    
Sbjct: 389 KVGLKMNTVICNSLINGYCKLGHVNKAAEVL-VSMKDWNLKPDSYGYNTLLDGFCKQEDF 447

Query: 360 DNFFKLLAQMEK--LKFSVAAD---LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI 414
              FKL  +M    + F+V      L+  F   VG  E    AL ++  +  +G +   +
Sbjct: 448 IKAFKLCDEMHNKGVNFTVVTYNTLLKNLFH--VGHVEH---ALHIWNLMHKRGVAPNEV 502

Query: 415 -YNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
            Y  L+ A  ++G   +A+ ++     +G    +   +  I   C +E   +++A E   
Sbjct: 503 TYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEK--LVQAQEIFL 560

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           K+ E+   P    Y  L  G CK+G +  A+ L      +  S  TE  Y   I  V RS
Sbjct: 561 KMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEM-YNSLITGVFRS 619

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
            E +K+  +L EM      PN V   ++I+G C  G +++A   +  + ++ +    N I
Sbjct: 620 EELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGI--APNII 677

Query: 592 VYDEI---LIEHMKKKTADLVL 610
           +  +I   L  H K   A+L+L
Sbjct: 678 IGSKIVSSLYRHGKIDEANLIL 699



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 104/455 (22%), Positives = 195/455 (42%), Gaps = 42/455 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + +  E+L  M+    KPD + Y  ++     + +     ++ +EM    V   V+ Y
Sbjct: 410 GHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTY 469

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+  L   G V     ++  M + G+  +   Y  L++     G   +A  + KD + 
Sbjct: 470 NTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALS 529

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G+   + +YN++I G C++++  +A ++F    +    PD  T   L+    ++G +  
Sbjct: 530 KGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVE 589

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
             KL    E+   S + ++       V + E +     +  E+K +  S +V  Y  L+ 
Sbjct: 590 ALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIA 649

Query: 421 ALLEIGEVKKA-------------------------LYLFGKMRGLNLEVNSLSFSIAIQ 455
              + G + KA                         LY  GK+   NL ++ ++    I 
Sbjct: 650 GWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQIADIDPIA 709

Query: 456 CHVESGDILEACECH---NKIIE------MS-QVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
            H  S ++ ++   H    KI++      MS  + +   YN    GLCK   ID    ++
Sbjct: 710 AHAHSVELPKSDLRHLETQKIVDSFGKKAMSIPISNNIVYNIAITGLCKSKNIDDVRRIL 769

Query: 506 RDCLGNVASGPTEFKYALTILHVCRS-GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
            D L      P  + Y  +++H C + G+  +   + ++M   G  PN V+ +A+I+G+C
Sbjct: 770 SDLLLK-GFCPDNYTYC-SLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNALINGLC 827

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           K G L+ AR++F  L  + L   + T+V    LI+
Sbjct: 828 KSGNLDRARRLFNKLARKGL---SPTVVTYNTLID 859



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 101/443 (22%), Positives = 185/443 (41%), Gaps = 28/443 (6%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            KG      +YN L       NLF             G +   L I   M +    P+  
Sbjct: 459 NKGVNFTVVTYNTLL-----KNLFHV-----------GHVEHALHIWNLMHKRGVAPNEV 502

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  ++         D  + +W++         +  Y T+I G CK  ++V+  E+F +M
Sbjct: 503 TYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKM 562

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD-SGYRADLGIYNSIIGGLCRVKQ 323
           KE G   D   Y  LI+G    G + +A  L KD+ +  G  +   +YNS+I G+ R ++
Sbjct: 563 KELGFPPDEITYRTLIDGYCKVGNLVEALKL-KDMSERDGISSSTEMYNSLITGVFRSEE 621

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN----FFKLLAQMEKLKFSVAAD 379
             K   L       +L+P+  T   L+    + G MD     +FK++ +       + + 
Sbjct: 622 LQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSK 681

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
           +     +  GK +   + L    ++      +  +   L  + L   E +K +  FGK +
Sbjct: 682 IVSSL-YRHGKIDEANLILHQIADIDPIAAHAHSVE--LPKSDLRHLETQKIVDSFGK-K 737

Query: 440 GLNLEV-NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
            +++ + N++ ++IAI    +S +I +     + ++     P    Y  L      +G++
Sbjct: 738 AMSIPISNNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKV 797

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           + A  L RD + N    P    Y   I  +C+SG  ++   + N++ ++G  P  V  + 
Sbjct: 798 NEAFCL-RDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNT 856

Query: 559 IISGMCKHGTLEEARKVFTNLRE 581
           +I G CK G   EA ++   +RE
Sbjct: 857 LIDGYCKGGRTTEALELKDKMRE 879



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 154/372 (41%), Gaps = 10/372 (2%)

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  MI        L     ++ +MK+     D + Y TLI G CK G +V   +L    +
Sbjct: 539 YNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSE 598

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
            +GI     +Y  LI G+    ++ K   LL ++ +     ++  Y S+I G C     D
Sbjct: 599 RDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMD 658

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           KAY  +   +   +AP+    + ++      G++D    +L Q+  +   +AA       
Sbjct: 659 KAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQIADID-PIAAHAHSV-- 715

Query: 386 FLVGKEERIMMALDVFEELKGKGYSSVPI-----YNILMGALLEIGEVKKALYLFGKMRG 440
            L   + R +    + +   GK   S+PI     YNI +  L +   +     +   +  
Sbjct: 716 ELPKSDLRHLETQKIVDSF-GKKAMSIPISNNIVYNIAITGLCKSKNIDDVRRILSDLLL 774

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
                ++ ++   I      G + EA    + +I    VP++  YN L  GLCK G +D 
Sbjct: 775 KGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNALINGLCKSGNLDR 834

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A  L    L      PT   Y   I   C+ G   + +E+ ++M +EG  P+ +  S +I
Sbjct: 835 ARRLFNK-LARKGLSPTVVTYNTLIDGYCKGGRTTEALELKDKMREEGICPSSITYSTLI 893

Query: 561 SGMCKHGTLEEA 572
            G+   G  E++
Sbjct: 894 HGLYMEGKSEQS 905



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 62/122 (50%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E   + + M      P++  Y A+I  L    NLD   R++ ++ +  +   V+ Y
Sbjct: 795 GKVNEAFCLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTY 854

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G CKGGR     EL  +M+E GI      Y  LI GL  EGK  ++  LL +++ 
Sbjct: 855 NTLIDGYCKGGRTTEALELKDKMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMK 914

Query: 302 SG 303
           +G
Sbjct: 915 AG 916



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/361 (20%), Positives = 137/361 (37%), Gaps = 69/361 (19%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E L++ +   R+        Y ++I  +     L     +  EMK   +  +V+ Y
Sbjct: 585 GNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTY 644

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL----- 296
            +LI G C  G + + +  + +M + GI  +  I   ++  L   GK+ +A  +L     
Sbjct: 645 GSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQIAD 704

Query: 297 -----------------------KDLVDSGYRADLGI-------YNSIIGGLCRVKQFDK 326
                                  + +VDS  +  + I       YN  I GLC+ K  D 
Sbjct: 705 IDPIAAHAHSVELPKSDLRHLETQKIVDSFGKKAMSIPISNNIVYNIAITGLCKSKNIDD 764

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
             ++    +     PD  T   L+  C+ +G+++  F L   M      + A L      
Sbjct: 765 VRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDM------INAGL------ 812

Query: 387 LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
                                   ++ +YN L+  L + G + +A  LF K+    L   
Sbjct: 813 ----------------------VPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPT 850

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
            ++++  I  + + G   EA E  +K+ E    PS   Y+ L  GL   G+ + ++ L+ 
Sbjct: 851 VVTYNTLIDGYCKGGRTTEALELKDKMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLN 910

Query: 507 D 507
           +
Sbjct: 911 E 911



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 70/167 (41%)

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y   I  L   +N+D   R+  ++       D   Y +LI      G+V     L  +M
Sbjct: 748 VYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDM 807

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              G++ +  +Y  LI GL   G + +A  L   L   G    +  YN++I G C+  + 
Sbjct: 808 INAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRT 867

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
            +A +L +   ++ + P   T + L+      G+ +    LL +M K
Sbjct: 868 TEALELKDKMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMK 914


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 110/499 (22%), Positives = 213/499 (42%), Gaps = 61/499 (12%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           NA +Y +    L++A           G   + +++ ++M      P+   Y  MI     
Sbjct: 187 NAFSYNVVIAGLWKA-----------GTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIK 235

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR---------------------- 253
           + +L++  R+W +M +  ++ +V+ Y  L+ GLC+ GR                      
Sbjct: 236 KGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFT 295

Query: 254 ---VVRGHE----------LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
              +  GH           LF E  + G+ I      +L+ GL  +GK+ KA ++L+ LV
Sbjct: 296 YSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLV 355

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +SG      IYN++I G C++   + A+ +F+      + PD  T N L+    ++ R+ 
Sbjct: 356 NSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERIT 415

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNI 417
               L+ +ME  K  V   +E F   +   G+  ++     +  +++ KG   +V  Y  
Sbjct: 416 EAHDLVIEME--KNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGS 473

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++ A  + G++ +A+ +   M   ++   +  ++  I  ++E G   +A     K+    
Sbjct: 474 IVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSG 533

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             PS+  YN L KGLCK  +I  A  L+ D L N    P    Y   I   C     ++ 
Sbjct: 534 VPPSIVTYNLLIKGLCKQSQISEAEELL-DSLRNYGLAPDVISYNTLISACCYRSNTDRA 592

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER---------KLLTEA 588
           +E+  EM + G  P+      + S +   G + E   ++  + ++          ++ +A
Sbjct: 593 LELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDA 652

Query: 589 NTIVYDEILIEHMKKKTAD 607
                +E  +E ++K+ +D
Sbjct: 653 YAKCGEESKVEALRKEMSD 671



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/450 (22%), Positives = 190/450 (42%), Gaps = 52/450 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA-DVMA 240
           GR A++    E +     +PD F +   ++      +LD  + +   M  D   A +  +
Sbjct: 131 GRHADVRGAFELLVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFS 190

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I GL K G      +LF EM E  ++ +   Y  +I+G + +G +     L   ++
Sbjct: 191 YNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQML 250

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + ++  YN ++ GLCR  +  +   + +      + PD  T + L    +  G   
Sbjct: 251 RHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQ 310

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILM 419
               L  +  K    + A         + K+ +I  A +V + L   G   +  IYN L+
Sbjct: 311 TMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLI 370

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ- 478
               +IG+++ A  +F +M+   +  + ++++  I      G +    E H+ +IEM + 
Sbjct: 371 NGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALIN---GLGKVERITEAHDLVIEMEKN 427

Query: 479 --VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              PSV  +N L         IDA                    Y        R+G+ EK
Sbjct: 428 GVNPSVETFNTL---------IDA--------------------YG-------RAGQLEK 451

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
              +L++M ++G  PN V   +I++  CK+G + EA  +  ++  + +L  A   VY+ I
Sbjct: 452 CFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQ--VYNAI 509

Query: 597 LIEHMKKKTADLVLSGLKFFGLESKLKAKG 626
           +  +++  + D      + F L  K+K+ G
Sbjct: 510 IDAYIECGSTD------QAFMLAEKMKSSG 533



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q +I+E  E+L+ +R     PDV +Y  +I       N D  L + +EM K  ++     
Sbjct: 551 QSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRT 610

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L   L   GRV     L+++M +  ++    IY ++++     G+  K   L K++ 
Sbjct: 611 YRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMS 670

Query: 301 DSGYRADLGIYNSI 314
           D G    +G Y S+
Sbjct: 671 DKGIA--VGDYTSM 682


>gi|255661028|gb|ACU25683.1| pentatricopeptide repeat-containing protein [Citharexylum
           montevidense]
          Length = 376

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 164/357 (45%), Gaps = 13/357 (3%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           S +A+ Y    N  F+A           GRI    ++ E M R   + +V ++  M+R L
Sbjct: 22  SPDAVVYNAMLNGFFKA-----------GRIKNCFDLWELMGREGSR-NVASFNTMMRGL 69

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
                +D    +WE MK+     D   Y  L+ G CK G   +   +    K+ G  +D 
Sbjct: 70  FNNGEVDEVFSIWELMKESGFVEDSTTYGILVHGFCKNGYNNKSLHVLEIAKQEGGALDA 129

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             Y  +I GL   GK+ KA  +L  +++SG + +  +YN++I GL    +F+ A ++F+ 
Sbjct: 130 FAYSAMISGLCKMGKLDKAVSVLNGMIESGCKPNTQVYNALINGLLGASKFEDAIRVFKE 189

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER 393
                 +P   T N L+    +  R    + L+ +M +  ++ +          + ++ +
Sbjct: 190 LGTRHCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWNPSVITYSLLIKGLCQDHK 249

Query: 394 IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           + MAL ++ ++  KG+   V ++NIL+  L  +G+ + A  L+  M   N   N ++++ 
Sbjct: 250 VEMALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTEHASELYFDMNHWNCAPNLVTYNT 309

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
            ++   + GD   A     +I+    +P + +YN   KGLC    I  A++ + D +
Sbjct: 310 LMEGFYKGGDTRNALVIWARILRNGLLPDIISYNITLKGLCACNRISVAILFLNDAV 366



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 20/241 (8%)

Query: 130 NNPTLASKFFHWA-GKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG------ 182
           NN  +   F  W   K+ G+  +  +Y  L +   +N     +  V E+   +G      
Sbjct: 71  NNGEVDEVFSIWELMKESGFVEDSTTYGILVHGFCKNGYNNKSLHVLEIAKQEGGALDAF 130

Query: 183 -------------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
                        ++ + + +L  M  + CKP+   Y A+I  L      +  +RV++E+
Sbjct: 131 AYSAMISGLCKMGKLDKAVSVLNGMIESGCKPNTQVYNALINGLLGASKFEDAIRVFKEL 190

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
                   ++ Y TLI GLCKG R    ++L +EM E G       Y +LI+GL  + KV
Sbjct: 191 GTRHCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWNPSVITYSLLIKGLCQDHKV 250

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
             A  L   ++  G++ D+ ++N +I GLC V + + A +L+      + AP+  T N L
Sbjct: 251 EMALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTEHASELYFDMNHWNCAPNLVTYNTL 310

Query: 350 L 350
           +
Sbjct: 311 M 311



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 151/342 (44%), Gaps = 11/342 (3%)

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C+ G +     +++EM E+ I  D  +Y  ++ G    G++    DL + +   G R ++
Sbjct: 1   CESGAINAAERVYKEMAESKISPDAVVYNAMLNGFFKAGRIKNCFDLWELMGREGSR-NV 59

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL-- 366
             +N+++ GL    + D+ + ++E+  +     D +T   L+    + G  +    +L  
Sbjct: 60  ASFNTMMRGLFNNGEVDEVFSIWELMKESGFVEDSTTYGILVHGFCKNGYNNKSLHVLEI 119

Query: 367 AQMEKL---KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALL 423
           A+ E      F+ +A +    +  +GK ++ +  L+   E   K   +  +YN L+  LL
Sbjct: 120 AKQEGGALDAFAYSAMISGLCK--MGKLDKAVSVLNGMIESGCK--PNTQVYNALINGLL 175

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
              + + A+ +F ++   +     ++++  I    +     EA +   +++E    PSV 
Sbjct: 176 GASKFEDAIRVFKELGTRHCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWNPSVI 235

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            Y+ L KGLC+  +++ A+ L    +      P    + + I  +C  G+ E   E+  +
Sbjct: 236 TYSLLIKGLCQDHKVEMALQLWNQVISK-GFKPDVQMHNILIHGLCSVGKTEHASELYFD 294

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
           M    C PN V  + ++ G  K G    A  ++  +    LL
Sbjct: 295 MNHWNCAPNLVTYNTLMEGFYKGGDTRNALVIWARILRNGLL 336



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 70/163 (42%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R AE  +++++M      P V  Y+ +I+ L  +  ++  L++W ++     + DV  + 
Sbjct: 214 RFAEAYDLVKEMLEKGWNPSVITYSLLIKGLCQDHKVEMALQLWNQVISKGFKPDVQMHN 273

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI GLC  G+     EL+ +M       +   Y  L+EG    G    A  +   ++ +
Sbjct: 274 ILIHGLCSVGKTEHASELYFDMNHWNCAPNLVTYNTLMEGFYKGGDTRNALVIWARILRN 333

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           G   D+  YN  + GLC   +   A       V  ++ P   T
Sbjct: 334 GLLPDIISYNITLKGLCACNRISVAILFLNDAVTKNIVPTVIT 376


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 106/450 (23%), Positives = 208/450 (46%), Gaps = 25/450 (5%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + RI+E L++  +M    CKP+V  +T ++  L  E  +   + + + M +D ++ + + 
Sbjct: 164 EDRISEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQIT 219

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y T++ G+CK G  V    L R+M+E + I+ +  IY  +I+GL  +G+   A +L  ++
Sbjct: 220 YGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEM 279

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            +     D+  YN +I G C   ++  A +L +  ++  + PD  T + L+    + G+ 
Sbjct: 280 QEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKF 339

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
               +L  +M  L  S+      +   + G  K+ R+  A  +F     KG S  +  +N
Sbjct: 340 FEAEELYDEM--LPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFN 397

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+        V   + L  +M    L  N+++++  I    + GD+  A +   ++I  
Sbjct: 398 TLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISS 457

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC----LGNVASGPTEF------KYALTIL 526
              P+V   N L  GLC  G++  A+ + +      +   AS P          Y + I 
Sbjct: 458 GVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILIC 517

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
            +   G+  +  E+  EM   G  P+ +  S++I G+CK   L+EA ++F ++  +    
Sbjct: 518 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSF-- 575

Query: 587 EANTIVYDEILIEHMKKKTADLVLSGLKFF 616
             + + ++ ++  + K   A +V  GL+ F
Sbjct: 576 SPDVVTFNTLITGYCK---AGMVDDGLELF 602



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/429 (24%), Positives = 187/429 (43%), Gaps = 18/429 (4%)

Query: 178 MDSQGRIAEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           M   G     L +L KM   +   P+V  Y  +I  L  +        ++ EM++  +  
Sbjct: 227 MCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFP 286

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D++ Y  +I G C  GR     +L +EM E  I  D   +  LI   V EGK  +A +L 
Sbjct: 287 DIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELY 346

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            +++          Y+S+I G C+  + D A  +F +T     +PD  T N L+      
Sbjct: 347 DEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRA 406

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVP 413
            R+D+  KLL +M +    + A+   +   + G  +   +  A D+ +E+   G   +V 
Sbjct: 407 KRVDDGIKLLHEMTEA--GLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVV 464

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS-----------LSFSIAIQCHVESGD 462
             N L+  L + G++K AL +F  M+   +++++            +++I I   +  G 
Sbjct: 465 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGK 524

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
            LEA E + ++     VP    Y+ +  GLCK   +D A  +  D +G+ +  P    + 
Sbjct: 525 FLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF-DSMGSKSFSPDVVTFN 583

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             I   C++G  +  +E+  EM Q G   + +    +I G  K   ++ A  +F  +   
Sbjct: 584 TLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISS 643

Query: 583 KLLTEANTI 591
            +  +  TI
Sbjct: 644 GVYPDTITI 652



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/403 (21%), Positives = 173/403 (42%), Gaps = 48/403 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR   ++ + +KM       + +++T +++   +   L   L  + ++ K      V+ +
Sbjct: 95  GRPDVVISLHKKMEMLRMPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTF 154

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+ GLC   R+    +LF +M +  ++     +  L+ GL  EG+V +A  LL  +++
Sbjct: 155 NTLLHGLCVEDRISEALDLFHQMCKPNVV----TFTTLMNGLCREGRVVEAVALLDRMLE 210

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + +   Y +I+ G+C+                                   MG   +
Sbjct: 211 DGLQPNQITYGTIVDGMCK-----------------------------------MGDTVS 235

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
              LL +ME++   +  ++  +   + G  K+ R   A ++F E++ K  +  +  YN +
Sbjct: 236 ALNLLRKMEEVS-HIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCM 294

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +      G    A  L  +M    +  + ++FS  I   V+ G   EA E +++++  S 
Sbjct: 295 INGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSI 354

Query: 479 VPSVAAYNCLTKGLCKIGEIDAA--MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
           +PS   Y+ +  G CK   +DAA  M  +    G     P    +   I   CR+   + 
Sbjct: 355 IPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKG---CSPDIITFNTLIAGYCRAKRVDD 411

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            I++L+EMT+ G   N +  + +I G C+ G L  A+ +   +
Sbjct: 412 GIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEM 454



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G+  E  E+ E+M      PD   Y++MI  L  +  LD   ++++ M       DV+
Sbjct: 521 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVV 580

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            + TLI G CK G V  G ELF EM + GI+ D   Y  LI G      +  A D+ +++
Sbjct: 581 TFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEM 640

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
           + SG   D     +++ GL   ++ ++A  + E
Sbjct: 641 ISSGVYPDTITIRNMLTGLWSKEELERAVAMLE 673



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 9/203 (4%)

Query: 397 ALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A+D+F  + + +   SV  +  LMG ++ +G     + L  KM  L +  N+ SF+I ++
Sbjct: 65  AIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPCNAYSFTILMK 124

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-CLGNVAS 514
           C      +  A     KI ++   P+V  +N L  GLC    I  A+ L    C  NV +
Sbjct: 125 CFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQMCKPNVVT 184

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
                 +   +  +CR G   + + +L+ M ++G  PN++    I+ GMCK G    A  
Sbjct: 185 ------FTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALN 238

Query: 575 VFTNLRERKLLTEANTIVYDEIL 597
           +   + E   +   N ++Y+ I+
Sbjct: 239 LLRKMEEVSHII-PNVVIYNTII 260



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 14/212 (6%)

Query: 181 QGRIAEMLEILEKMRR-----------NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
            G++ + LE+ + M++           N  +PDV  Y  +I  L  E        ++EEM
Sbjct: 476 NGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEM 535

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
               +  D + Y ++I GLCK  R+    ++F  M       D   +  LI G    G V
Sbjct: 536 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMV 595

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
               +L  ++   G  AD   Y ++I G  +V   D A  +F+  +   + PD  T+  +
Sbjct: 596 DDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNM 655

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
           L     +   +   + +A +E L+ SV   LE
Sbjct: 656 L---TGLWSKEELERAVAMLEDLQMSVGYQLE 684



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 111/269 (41%), Gaps = 5/269 (1%)

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           G   +K  D A  LF   V+    P       L+     MGR D    L  +ME L+   
Sbjct: 55  GFHEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPC 114

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
            A              ++  AL  F ++   G+  +V  +N L+  L     + +AL LF
Sbjct: 115 NAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLF 174

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M     + N ++F+  +      G ++EA    ++++E    P+   Y  +  G+CK+
Sbjct: 175 HQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKM 230

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G+  +A+ L+R         P    Y   I  + + G       +  EM ++   P+ V 
Sbjct: 231 GDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVT 290

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKL 584
            + +I+G C  G   +A ++   + ERK+
Sbjct: 291 YNCMINGFCISGRWSDAEQLLQEMLERKI 319


>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1023

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 126/525 (24%), Positives = 237/525 (45%), Gaps = 59/525 (11%)

Query: 149 KHNFASYNAL--AYCLSRNNLFRAADQVPELM---DSQGRIAEMLEILEKMRRNLCKPDV 203
           K +  +YN L  A+C    +L RA     E++     + R+     + +   +NL +P +
Sbjct: 264 KIDIVTYNTLLKAFC-KTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNL-QPTL 321

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT +I        ++    ++++M  + +  DV+   +++ G C+ G++     LFRE
Sbjct: 322 VTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFRE 381

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M E G+  +   Y  +I  L   G+V +A +L   +V  G   D+    +++ GL +V +
Sbjct: 382 MYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGK 441

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
             +A ++FE  ++ +LAP+  T + LL    ++G+M+    +L +MEK    V  ++  F
Sbjct: 442 TKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEH--VPPNVITF 499

Query: 384 FEFLVGKEERIMM--ALDVFEELKGK--------------GY------------------ 409
              + G  ++ M+  A+DV  E+  +              GY                  
Sbjct: 500 SSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKS 559

Query: 410 ----SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
                S  I++IL+  L  +G + +A  L   M    ++ + ++++  I  + + G+ L 
Sbjct: 560 RRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLA 619

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A     ++ E +    V AYN L KGL ++G+ D   +  R  +  +   P    Y   I
Sbjct: 620 ALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSR--MIELGLAPDCITYNTII 677

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
              C  G+ E  +++LNEM   G  PN V  + +I G+CK G +E+A    + L E  ++
Sbjct: 678 NTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAE---SALDEMLVM 734

Query: 586 TEANTIVYDEILIE-HMKKKTADLVLSGLKFFGLESKLKAKGCKL 629
               T +  + L++ + + + AD      K   +  KL A G +L
Sbjct: 735 EFVPTPITHKFLVKAYSRSEKAD------KILQIHEKLVASGLEL 773



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 192/434 (44%), Gaps = 37/434 (8%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PDVF+   ++  L    +LD  L        D+V+ D + Y T+I G C+ G V +G  L
Sbjct: 127 PDVFSVNVLVHSLCKVGDLDLALGYLRN--NDVVDIDNVTYNTVIWGFCQKGLVDQGFGL 184

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             EM + G+  D     +L++G    G V  A  ++ +LVD G   D+   N++I G C 
Sbjct: 185 LSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCE 244

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-------EKLK 373
                +A +L E + + D+  D  T N LL    + G +     L  ++       ++LK
Sbjct: 245 AGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLK 304

Query: 374 -----------------FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY--SSVPI 414
                             +    +  + +F VG EE    +  +++++   G     V  
Sbjct: 305 NNDVVTQNEIKNLQPTLVTYTTLIAAYCKF-VGVEE----SHSLYKKMIMNGIMPDVVTC 359

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
            +IL G     G++ +A  LF +M  + L+ N +S++  I    +SG ++EA    ++++
Sbjct: 360 SSILYG-FCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMV 418

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                  +     +  GL K+G+   A  +    L  +   P    Y+  +   C+ G+ 
Sbjct: 419 VRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETIL-KLNLAPNCVTYSALLDGYCKLGKM 477

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           E    VL +M +E  PPN +  S+II+G  K G L +A  V   + +R ++   NTIVY 
Sbjct: 478 ELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVM--PNTIVYA 535

Query: 595 EILIEHMKKKTADL 608
            ++  + K    D+
Sbjct: 536 ILIDGYFKAGEQDV 549



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/436 (22%), Positives = 178/436 (40%), Gaps = 77/436 (17%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  E  E+ E + +    P+   Y+A++        ++    V ++M+K+ V  +V+ +
Sbjct: 440 GKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITF 499

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            ++I G  K G + +  ++ REM +  ++ +  +Y +LI+G    G+   A D  K++  
Sbjct: 500 SSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKS 559

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                   I++ ++  L RV + D+A  L        + PD      L+         D 
Sbjct: 560 RRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLI---------DG 610

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
           +FK                          E   + AL + +E+K K     V  YN L+ 
Sbjct: 611 YFK--------------------------EGNQLAALSIVQEMKEKNIRFDVVAYNALIK 644

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            LL +G+     Y+  +M  L L  + ++++  I  +   G   +A +  N++     +P
Sbjct: 645 GLLRLGKYDPR-YVCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMP 703

Query: 481 SVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGN------------------------ 511
           +   YN L  GLCK G ++ A      MLV + +                          
Sbjct: 704 NAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIH 763

Query: 512 ---VASGPTEFKYALTILHV-----CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
              VASG    + +LT+ +      CR G   K   VL+EM + G   + V  +A+I G 
Sbjct: 764 EKLVASG---LELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGY 820

Query: 564 CKHGTLEEARKVFTNL 579
           C    +E+A K ++ +
Sbjct: 821 CTGSHVEKALKTYSQM 836



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 171/390 (43%), Gaps = 15/390 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E   ++  M      PD+  Y ++I     E N  A L + +EMK+  +  DV+AY
Sbjct: 580 GRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAY 639

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GL + G+    +   R M E G+  D   Y  +I     +GK   A D+L ++  
Sbjct: 640 NALIKGLLRLGKYDPRYVCSR-MIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKS 698

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   +   YN +IGGLC+    +KA    +  +  +  P   T   L+   +   + D 
Sbjct: 699 YGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADK 758

Query: 362 FF----KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS-VPIYN 416
                 KL+A   +L  +V   L   F  L G   +  + LD   E+  +G S+ +  YN
Sbjct: 759 ILQIHEKLVASGLELSLTVYNTLITVFCRL-GMTRKAKVVLD---EMVKRGISADLVTYN 814

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII-E 475
            L+        V+KAL  + +M    +  N  +++  +     +G + E  E   K++ E
Sbjct: 815 ALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSE 874

Query: 476 MSQ---VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           M++   VP+ A Y+ L  G  ++G     ++L  + +      PT   Y + I    +SG
Sbjct: 875 MNERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITK-GFVPTLKTYNVLISDYAKSG 933

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
           +  +  E+LN++  +G  PN      +  G
Sbjct: 934 KMIEARELLNDLLTKGRIPNSFTYDILTCG 963



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 89/401 (22%), Positives = 149/401 (37%), Gaps = 93/401 (23%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K+K  + +  +YNAL        L R     P  + S+     M+E+          PD 
Sbjct: 628 KEKNIRFDVVAYNALI-----KGLLRLGKYDPRYVCSR-----MIELG-------LAPDC 670

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  +I     +   +  L +  EMK   +  + + Y  LI GLCK G V +      E
Sbjct: 671 ITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDE 730

Query: 264 M-----------------------------------KENGILIDRAIYGVLIEGLVGEGK 288
           M                                     +G+ +   +Y  LI      G 
Sbjct: 731 MLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRLGM 790

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
             KA  +L ++V  G  ADL  YN++I G C     +KA K +     D +AP+ +T N 
Sbjct: 791 TRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNT 850

Query: 349 LLVCCAEMG----RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL 404
           LL   +  G     M+   KL+++M                      ER ++        
Sbjct: 851 LLGGLSNAGLMEEMMEETEKLVSEM---------------------NERGLVP------- 882

Query: 405 KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
                 +   Y+IL+     +G  KK + L  +M          ++++ I  + +SG ++
Sbjct: 883 ------NAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMI 936

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIG---EIDAAM 502
           EA E  N ++   ++P+   Y+ LT G   +    EID ++
Sbjct: 937 EARELLNDLLTKGRIPNSFTYDILTCGWLNLSYEPEIDRSL 977



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 7/147 (4%)

Query: 435 FGKMRGLNLEVNSLSF--SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
           F  MR L L V +L F  ++  Q +  SG + +    ++ ++    VP V + N L   L
Sbjct: 82  FSHMRALGL-VPTLPFWNTLLYQFNA-SGLVSQVKLMYSDMLFCGVVPDVFSVNVLVHSL 139

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           CK+G++D A+  +R+   N         Y   I   C+ G  ++   +L+EM + G   +
Sbjct: 140 CKVGDLDLALGYLRN---NDVVDIDNVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFD 196

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNL 579
            + C+ ++ G C+ G ++ A  V  NL
Sbjct: 197 SITCNILVKGYCRIGLVQYAEWVMYNL 223


>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 560

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 155/346 (44%), Gaps = 18/346 (5%)

Query: 100 QFQWGPQVVTELSKLRRVTPDL-VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL 158
           Q  W P  +  LS++ R      + EVLK +    LA KFF WA +Q+GYKH+  +Y  +
Sbjct: 14  QLNWRPDTLVALSRVNRTLSAFHINEVLKHQKESGLALKFFDWAKEQEGYKHDVCTYTTM 73

Query: 159 AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
              + R   F A  +                +L++MRR  C+P V  Y  +I        
Sbjct: 74  IGIMGRARNFEACSR----------------LLQEMRREGCEPCVVTYNRLIHAYGRANF 117

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
           L   +R++ +M+++    D + Y TL+    K G      +++++M++ G   D   Y V
Sbjct: 118 LGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSV 177

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           +I  L   GKV +A  L +++V+ G+   L  YN II    +   +  A KL+       
Sbjct: 178 IIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAG 237

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL 398
             PD  T + ++    ++G +     +  +ME+  +   A +      + GK      AL
Sbjct: 238 FHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARNAERAL 297

Query: 399 DVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           + ++++   G + +V I N L+G+ L + +   A  +   M+   L
Sbjct: 298 EWYQKMLDSGLTPNVQISNSLLGSYLRMQQFDLAFGVIETMKAWGL 343



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/387 (20%), Positives = 168/387 (43%), Gaps = 38/387 (9%)

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMR-RNLCKPDVFAYTAMIRVLAAERNLD 220
           LSR N   +A  + E++  Q      L+  +  + +   K DV  YT MI ++   RN +
Sbjct: 25  LSRVNRTLSAFHINEVLKHQKESGLALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFE 84

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280
           AC R+ +EM+++  E  V+ Y  LI    +   +     +F +M+E G   DR  Y  L+
Sbjct: 85  ACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLV 144

Query: 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
           +     G    A D+ + +  +G++ D   Y+ II  L +  +  +A KLFE  V+   A
Sbjct: 145 DLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFA 204

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400
           P   T N ++                            DL+        K    +MA+ +
Sbjct: 205 PSLVTYNIII----------------------------DLQ-------AKSGNYVMAMKL 229

Query: 401 FEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           + +++  G+    + Y+I+M  L +IG +++A  +F +M       ++  + + +    +
Sbjct: 230 YNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGK 289

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           + +   A E + K+++    P+V   N L     ++ + D A  ++ + +      PT  
Sbjct: 290 ARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQFDLAFGVI-ETMKAWGLVPTLQ 348

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQ 546
            + + +     S +  +++ +++  ++
Sbjct: 349 THTILLSSCTASAQHHQVVNLMHRSSE 375



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 114/263 (43%), Gaps = 30/263 (11%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           +Q G++ +  +Y+ + +CL +                 G+++E L++ E+M      P +
Sbjct: 164 QQAGFQPDTFTYSVIIHCLGK----------------AGKVSEALKLFEEMVERGFAPSL 207

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  +I + A   N    ++++ +M+      D + Y  ++  L + G +     +F E
Sbjct: 208 VTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNE 267

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M++ G + D  IYGV+++         +A +  + ++DSG   ++ I NS++G   R++Q
Sbjct: 268 MEQAGWVPDAPIYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQ 327

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL--- 380
           FD A+ + E      L P   T   LL  C    +      L+ +  +  +S    L   
Sbjct: 328 FDLAFGVIETMKAWGLVPTLQTHTILLSSCTASAQHHQVVNLMHRSSETVYSFVCTLLLR 387

Query: 381 -----------EKFFEFLVGKEE 392
                      + FFE L G+E 
Sbjct: 388 QLPPQELKHIVQHFFESLHGEEH 410



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/298 (19%), Positives = 129/298 (43%), Gaps = 20/298 (6%)

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           GY+ D+  Y ++IG + R + F+   +L +   ++   P   T N L+        +   
Sbjct: 62  GYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEA 121

Query: 363 FKLLAQME-------KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPI 414
            ++  QM+       ++ +    DL     F          A+D++++++  G+      
Sbjct: 122 MRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDN-------AMDMYQKMQQAGFQPDTFT 174

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y++++  L + G+V +AL LF +M       + ++++I I    +SG+ + A + +N + 
Sbjct: 175 YSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQ 234

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC--LGNVASGPTEFKYALTILHVCRSG 532
           +    P    Y+ + + L +IG +  A ++  +    G V   P    Y + +    ++ 
Sbjct: 235 DAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPI---YGVMVDMWGKAR 291

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            AE+ +E   +M   G  PN  I ++++    +    + A  V   ++   L+    T
Sbjct: 292 NAERALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQFDLAFGVIETMKAWGLVPTLQT 349


>gi|413939576|gb|AFW74127.1| hypothetical protein ZEAMMB73_460696 [Zea mays]
          Length = 581

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 99/438 (22%), Positives = 187/438 (42%), Gaps = 39/438 (8%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           ++    R  + + + + MR     PD  A TA++  LA  R      RV++EM +  + A
Sbjct: 117 VLAQSARPHDAVRVFDHMRARGLAPDAHACTALLTALARARMTATARRVFDEMARAGLAA 176

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
               Y  ++    K G   +   +   M   G+ +DR  Y  +I     +G +G      
Sbjct: 177 TTHVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDRFSYNTVIALYCRKG-MGYEAMCA 235

Query: 297 KDLVDS-GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
           +D +D  G R D   +NS I GLC+  +  +A +LF   V     PD  T   L+     
Sbjct: 236 RDRMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPDNVTYTTLIDGYCR 295

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIY 415
            G ++   KL  +ME      AA +                       L G     V  Y
Sbjct: 296 AGNVEEAVKLRGRME------AAGM-----------------------LPG-----VATY 321

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N ++  L E G +K+   L  +M G  ++ + ++ +  I  + + GD+  AC+   K++E
Sbjct: 322 NAILRKLCEDGNMKEVHRLLHEMDGRKVQADHVTCNTLINAYCKRGDMTSACKVKKKMME 381

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
                +   Y  L  G CK  E+D A       + +    P    ++  +   C+   A+
Sbjct: 382 SGLQLNHFTYKALIHGFCKARELDGAKEAFFQMV-DAGFSPNYSVFSWLVDGFCKKNNAD 440

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
            ++ + +E+ + G PP++ +  ++I  +C+ G +++A++VF  ++ + L+   +++VY  
Sbjct: 441 AVLAIPDELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQRVFDQMQSKGLV--GDSLVYAT 498

Query: 596 ILIEHMKKKTADLVLSGL 613
           +   ++ K      L+ L
Sbjct: 499 LAYTYLTKGNPTAALNTL 516



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 114/261 (43%), Gaps = 1/261 (0%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E +++  +M      P V  Y A++R L  + N+    R+  EM    V+AD +  
Sbjct: 297 GNVEEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMDGRKVQADHVTC 356

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI   CK G +    ++ ++M E+G+ ++   Y  LI G     ++  A +    +VD
Sbjct: 357 NTLINAYCKRGDMTSACKVKKKMMESGLQLNHFTYKALIHGFCKARELDGAKEAFFQMVD 416

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G+  +  +++ ++ G C+    D    + +  ++  L PD +    L+      G +D 
Sbjct: 417 AGFSPNYSVFSWLVDGFCKKNNADAVLAIPDELMKRGLPPDKAVYRSLIRRLCRKGLVDQ 476

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL-KGKGYSSVPIYNILMG 420
             ++  QM+       + +     +    +     AL+  + + K + Y +  IYN L  
Sbjct: 477 AQRVFDQMQSKGLVGDSLVYATLAYTYLTKGNPTAALNTLDGMTKNQLYITPQIYNCLCT 536

Query: 421 ALLEIGEVKKALYLFGKMRGL 441
           +  +  E    L++    RGL
Sbjct: 537 SYADEKETLNMLWVRAIERGL 557



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 124/301 (41%), Gaps = 7/301 (2%)

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           ++M +   +PD   + + I  L  E  +    +++ EM       D + Y TLI G C+ 
Sbjct: 237 DRMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPDNVTYTTLIDGYCRA 296

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           G V    +L   M+  G+L   A Y  ++  L  +G + +   LL ++     +AD    
Sbjct: 297 GNVEEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMDGRKVQADHVTC 356

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N++I   C+      A K+ +  ++  L  +  T   L+    +   +D   +   QM  
Sbjct: 357 NTLINAYCKRGDMTSACKVKKKMMESGLQLNHFTYKALIHGFCKARELDGAKEAFFQMVD 416

Query: 372 LKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGE 427
             FS    +   F +LV    K+      L + +EL  +G      +Y  L+  L   G 
Sbjct: 417 AGFSPNYSV---FSWLVDGFCKKNNADAVLAIPDELMKRGLPPDKAVYRSLIRRLCRKGL 473

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           V +A  +F +M+   L  +SL ++     ++  G+   A    + + +     +   YNC
Sbjct: 474 VDQAQRVFDQMQSKGLVGDSLVYATLAYTYLTKGNPTAALNTLDGMTKNQLYITPQIYNC 533

Query: 488 L 488
           L
Sbjct: 534 L 534


>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1188

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 192/424 (45%), Gaps = 31/424 (7%)

Query: 119 PDLVAEVL-KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA------ 171
           P L+  VL +  +   L  +FF WA KQ GY H++    ++   LS+   F A       
Sbjct: 100 PGLIVRVLSRCGDAGNLGYRFFLWATKQPGYCHSYEVCKSMVKILSKMRQFGAVWGLIEE 159

Query: 172 --DQVPELMD------------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER 217
              + PEL++            S   + + +E+L++M +   +PD + +  ++  L    
Sbjct: 160 MRKENPELIEPELFVVLIRRFASANMVKKAVEVLDEMPKYGFEPDEYVFGCLLDALCKNG 219

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
           ++    +V+E+M++  +  ++  + +L+ G C+ G+++   E+  +MKE G+  D  ++ 
Sbjct: 220 SVKDASKVFEDMREK-IPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFT 278

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV-KQFDKAYKLFEVTVQ 336
            L+ G    GK+  A DLL D+   GY  +   Y  +I  LCR  K+ D+A ++F    +
Sbjct: 279 NLLSGYAHAGKMADAYDLLNDMRKRGYEPNANCYTVLIQALCRTEKRMDEAMRVFVEMER 338

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERI 394
                D  T   L+    + G +D  + +L  M K    V      + + LV   K+E+ 
Sbjct: 339 YGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKK--GVMPSQVTYMQILVAHEKKEQF 396

Query: 395 MMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
              L++ E++K  G +  + IYN+++       EVK+A+ L+ +M    L   +  F I 
Sbjct: 397 EECLELIEKMKQIGCHPDLLIYNVVIRLACNFREVKEAVRLWNEMEANGLSPGADMFVIM 456

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML--VRDCLGN 511
           I      G ++EAC  H K +    + S   Y  L   L  +   D   M   V  C+ N
Sbjct: 457 INGFTSQGYLIEAC-SHFKEMVSRGIFSAPQYGTLKSLLNTLLRDDKLEMAKDVWSCISN 515

Query: 512 VASG 515
             S 
Sbjct: 516 KTSS 519



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 144/322 (44%), Gaps = 45/322 (13%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA-AERNLDACLRVWEEMKKDLVEADVMA 240
           G++A+  ++L  MR+   +P+   YT +I+ L   E+ +D  +RV+ EM++   EAD++ 
Sbjct: 288 GKMADAYDLLNDMRKRGYEPNANCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVT 347

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK G + +G+ +  +M++ G++  +  Y  ++     + +  +  +L++ + 
Sbjct: 348 YTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQILVAHEKKEQFEECLELIEKMK 407

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   DL IYN +I   C  ++  +A +L+                             
Sbjct: 408 QIGCHPDLLIYNVVIRLACNFREVKEAVRLWN---------------------------- 439

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIYNI- 417
                  +ME    S  AD+  F   + G   +  ++ A   F+E+  +G  S P Y   
Sbjct: 440 -------EMEANGLSPGADM--FVIMINGFTSQGYLIEACSHFKEMVSRGIFSAPQYGTL 490

Query: 418 --LMGALLEIG--EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
             L+  LL     E+ K ++     +  + E+N  +++I I      G + EAC     +
Sbjct: 491 KSLLNTLLRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALFAKGHVKEACSYCLDM 550

Query: 474 IEMSQVPSVAAYNCLTKGLCKI 495
           +EM  +P    Y  L KGL K+
Sbjct: 551 MEMDLMPQPNTYVKLMKGLNKL 572


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 107/445 (24%), Positives = 202/445 (45%), Gaps = 30/445 (6%)

Query: 158 LAYCLSRN--NLFRAADQVP---ELMDSQ--------GRIAEMLEILEKMRRNLCKPDVF 204
           L YC S++  + FR  +++P   E+  +Q        GRI E + +  +M+ + C P+V+
Sbjct: 235 LGYCRSKDVDSAFRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVY 294

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            YTA+I+ L   +N+   + + +EM +  +  D++ Y +LI G C+ G +   + L   M
Sbjct: 295 TYTALIKGLC-RKNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLM 353

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           KE G++ D+  YG  I+ L    +V +A  L   L + G  A++ +Y+ +I G C+V + 
Sbjct: 354 KERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKV 413

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           D+A  LFE  +  + +P+  T N L+      G +     L  QM K+           F
Sbjct: 414 DEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTV---YTF 470

Query: 385 EFLVG---KEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKKALYLFGKMRG 440
             L+G   K+     A    +++   G   V   YN  +      G+V++A  +  +M+ 
Sbjct: 471 NILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKE 530

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC-KIGEID 499
             +  +  +++  I+ + + G    A +    + +    PS   +  L K L  K   ++
Sbjct: 531 EGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVE 590

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            +     + + N    P    + +         E + +IE+  EM + GC P+      +
Sbjct: 591 KSGETGVESVSNFGDVPGSNMWKMM--------EFDIVIELFEEMEKHGCTPDSKCYEKL 642

Query: 560 ISGMCKHGTLEEARKVFTNLRERKL 584
           ISG+CK   L  A K+   +++  +
Sbjct: 643 ISGICKVENLGIALKLLDQMQKEGI 667



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 116/516 (22%), Positives = 204/516 (39%), Gaps = 56/516 (10%)

Query: 70  QSPP---SDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVL 126
            +PP   SDP    L  HL  I         K  +Q  P +    S L  +TP  V+ + 
Sbjct: 28  HTPPEAESDPS--HLPHHLLSI-------LSKPNWQNNPSLK---SLLPAITPSHVSSLF 75

Query: 127 KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAE 186
            +  +P  A +F +W  +   +KHN  SY +L   L+  +  +    VP++         
Sbjct: 76  SLNLDPHTALQFSYWISQTPNFKHNVDSYASL---LTLIDHHKIVSDVPKI--------- 123

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
              I+  ++     PD    + + R ++               K D+ +  +  Y  L+ 
Sbjct: 124 ---IVSMIKCCYSAPDALFVSDICRKMS---------------KDDITKLSLKCYNELLT 165

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
            L + G V   ++L+ EM E  + +D   + ++I      G V +A   +  ++ +G   
Sbjct: 166 LLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSP 225

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV--NPLLVCCAEMGRMDNFFK 364
           D     S I G CR K  D A+++FE        P+ + V  N L+    E GR+D    
Sbjct: 226 DYFTSTSFILGYCRSKDVDSAFRVFEEM------PNRNEVSYNQLIHGLCEAGRIDEAVS 279

Query: 365 LLAQM-EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALL 423
           L  +M +   +          + L  K     M L + E L+      +  YN L+    
Sbjct: 280 LFVRMKDDCCYPNVYTYTALIKGLCRKNVHKAMGL-LDEMLERNLVPDLITYNSLIAGQC 338

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
             G +  A  L   M+   L  +  ++   I    +S  + EA    + + E     +V 
Sbjct: 339 RAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVI 398

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            Y+ L  G CK+G++D A  L    L    S P  + +   I  +C +G  ++ + + ++
Sbjct: 399 MYSVLIDGYCKVGKVDEAGCLFEKMLSKNCS-PNAYTFNALIHGLCSAGNLKEALSLFDQ 457

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           M + G  P     + +I  M K G  ++A K    +
Sbjct: 458 MVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKM 493



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 139/293 (47%), Gaps = 9/293 (3%)

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D   +  L  YN ++  L R    D+  +L+   +++ ++ D  T N ++    +MG + 
Sbjct: 150 DDITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVK 209

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIYNIL 418
              + + +M  ++  ++ D      F++G  + + +  A  VFEE+  +   S   YN L
Sbjct: 210 EAKQFMCKM--IQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNRNEVS---YNQL 264

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L E G + +A+ LF +M+      N  +++  I+  +   ++ +A    ++++E + 
Sbjct: 265 IHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIK-GLCRKNVHKAMGLLDEMLERNL 323

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           VP +  YN L  G C+ G +D+A  L+   +      P +  Y   I  +C+S   E+  
Sbjct: 324 VPDLITYNSLIAGQCRAGHLDSAYRLLS-LMKERGLVPDQRTYGCFIDFLCKSNRVEEAR 382

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
            + + +T+EG   N ++ S +I G CK G ++EA  +F  +  +     A T 
Sbjct: 383 RLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTF 435



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 127/319 (39%), Gaps = 36/319 (11%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G + E L + ++M +   KP V+ +  +I  +  + + D   +  ++M     +    
Sbjct: 444 SAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVAR 503

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y   I   C  G+V    ++  +MKE G+  D   Y  LI+     G    A D+LK +
Sbjct: 504 TYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSM 563

Query: 300 VDSGYRADLGIYNSII-----------------------------GGLCRVKQFDKAYKL 330
            D+        + S+I                               + ++ +FD   +L
Sbjct: 564 FDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIEL 623

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG- 389
           FE   +    PD      L+    ++  +    KLL QM+K   S +   E  F  ++  
Sbjct: 624 FEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPS---EMVFNAVISC 680

Query: 390 --KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
             K ++   A ++ E++   G+S  +     L+  L E GE ++   +F K+RG     +
Sbjct: 681 CCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDD 740

Query: 447 SLSFSIAIQCHVESGDILE 465
            +++ I I   ++ G + E
Sbjct: 741 EIAWKILIDGMLKQGLVEE 759



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 70/153 (45%)

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
            D  + ++EEM+K     D   Y  LI G+CK   +    +L  +M++ GI     ++  
Sbjct: 617 FDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNA 676

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           +I       K G+A ++++D++ SG+   L    ++I GL    + ++   +F+      
Sbjct: 677 VISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCG 736

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
              D      L+    + G ++ F +L  +MEK
Sbjct: 737 YNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEK 769



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 35/152 (23%)

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY----- 241
           ++E+ E+M ++ C PD   Y  +I  +    NL   L++ ++M+K+ +    M +     
Sbjct: 620 VIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVIS 679

Query: 242 ------------------------------VTLIMGLCKGGRVVRGHELFREMKENGILI 271
                                          TLI GL + G   RG+ +F++++  G   
Sbjct: 680 CCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYND 739

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           D   + +LI+G++ +G V +   L +++  +G
Sbjct: 740 DEIAWKILIDGMLKQGLVEEFSQLFEEMEKNG 771


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 123/527 (23%), Positives = 222/527 (42%), Gaps = 64/527 (12%)

Query: 110 ELSKLRR----VTPDLVAEVLKVE-NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSR 164
           +L+KLR+    +TP  + ++L++  + PTL  + F   G QKGY H F  Y      L  
Sbjct: 66  DLTKLRKSHILITPVQLCKLLELPLDVPTLL-EIFERVGGQKGYCHTFDVYYVFINKLGA 124

Query: 165 NNLFRAADQVPELMDSQGRI-------------------AEMLEILEKMRR-NLCKPDVF 204
              F+  D++   M  +G +                    + + +L  MR   LC+P   
Sbjct: 125 IGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFK 184

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
           +Y  ++ +L           V+ +M    V   V  +  ++  LC    V     L R+M
Sbjct: 185 SYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDM 244

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            ++G + +  +Y  LI  L  + +V +A  LL+++   G   D+  +N +I GLC+V + 
Sbjct: 245 TKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKI 304

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--------------- 369
             A KL +  +     PD  T   LL     +G+++   K+L ++               
Sbjct: 305 HDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGY 364

Query: 370 ---------------EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-S 411
                            + F    D+  +   + G  KE  +  A D+  E+  +G   +
Sbjct: 365 VMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPN 424

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           V  Y IL+  L + G +++A  +  +M    L +NS+ ++  I        +  A    +
Sbjct: 425 VITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLS 484

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVC 529
           ++      P +  YN L  GLCK+  ID A  L  + L  G VA+  T   Y   I  + 
Sbjct: 485 EMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVT---YNTLIHALL 541

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           R G  +K + ++N+M   GC  +++  + +I   CK G +E+  +++
Sbjct: 542 RRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELY 588



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 156/371 (42%), Gaps = 35/371 (9%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PD+F Y  ++  L  E +L     +  EM +   E +V+ Y  L+ GLCK G +     
Sbjct: 387 QPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGL 446

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           +  EM   G+ I+  IY  LI  L  + KV  A +LL ++   G + DL  YNS+I GLC
Sbjct: 447 VLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLC 506

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +V + D+A++LF   + D    +  T N L+     + R   F K L  +  + F     
Sbjct: 507 KVDRIDEAFRLFHNMLLDGAVANNVTYNTLI---HALLRRGAFQKALTLVNDMLFR-GCT 562

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
           L+K                                YN L+ A  ++G ++K L L+ +M 
Sbjct: 563 LDKI------------------------------TYNGLIKAFCKVGNIEKGLELYEQMI 592

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              L  +++S +I I    + G +  A E     I    VP +  YN +  GLCK+G I 
Sbjct: 593 MDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIK 652

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A+ L  D L      P  F Y   I   C+ G             + G  P+ +  + +
Sbjct: 653 EALNLF-DRLQVEGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVL 711

Query: 560 ISGMCKHGTLE 570
           +  + K    E
Sbjct: 712 VYTLLKQSNQE 722



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 108/504 (21%), Positives = 204/504 (40%), Gaps = 51/504 (10%)

Query: 120 DLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD 179
           DLV E+L   N P +A+  F +    KG      ++  +   L    +F   D    L  
Sbjct: 187 DLVLEILVTGNCPQVATNVF-YDMLSKGVSPTVFTFGIVMKALC---MFNEVDSACSL-- 240

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
                      L  M ++ C P+   Y  +I  L+ +  +   L++ EEM       DV 
Sbjct: 241 -----------LRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQ 289

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL--- 296
            +  +I GLCK  ++    +L   M   G   D   YG L+ GL   GK+ +A  +L   
Sbjct: 290 TFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKI 349

Query: 297 -----------------------------KDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
                                        + +++ G++ D+  YN ++ GLC+      A
Sbjct: 350 PCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFA 409

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
             L     +    P+  T   L+    + G ++    +L +M     ++ + +       
Sbjct: 410 RDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICA 469

Query: 388 VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
           + ++E++ +AL++  E+  KG    +  YN L+  L ++  + +A  LF  M       N
Sbjct: 470 LCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVAN 529

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           +++++  I   +  G   +A    N ++          YN L K  CK+G I+  + L  
Sbjct: 530 NVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYE 589

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
             + +   G       + I  +C+ G+ +   E L +    G  P+ V  +++++G+CK 
Sbjct: 590 QMIMD-GLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKV 648

Query: 567 GTLEEARKVFTNLRERKLLTEANT 590
           G ++EA  +F  L+   +  +A T
Sbjct: 649 GRIKEALNLFDRLQVEGVRPDAFT 672



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 152/396 (38%), Gaps = 87/396 (21%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKM 194
           A  F +      G++ +  +YN L + L +                +G ++   +++ +M
Sbjct: 373 AQSFLNETMINFGFQPDIFTYNILMHGLCK----------------EGSLSFARDLVNEM 416

Query: 195 RRNLCKPDVFAYTAMIR-----------------------------------VLAAERNL 219
            R  C+P+V  Y  ++                                     L  +  +
Sbjct: 417 SRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKV 476

Query: 220 DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL 279
              L +  EM     + D+  Y +LI GLCK  R+     LF  M  +G + +   Y  L
Sbjct: 477 HVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTL 536

Query: 280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339
           I  L+  G   KA  L+ D++  G   D   YN +I   C+V   +K  +L+E  + D L
Sbjct: 537 IHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGL 596

Query: 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALD 399
             D  + N ++    ++G++DN F+ L                                 
Sbjct: 597 GADTISCNIMINGLCKVGKVDNAFEFL--------------------------------- 623

Query: 400 VFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV 458
              +   +G+   +  YN ++  L ++G +K+AL LF +++   +  ++ +++  I    
Sbjct: 624 --RDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQC 681

Query: 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           + G + +AC    + IE   VPS   +N L   L K
Sbjct: 682 KEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTLLK 717



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/395 (21%), Positives = 173/395 (43%), Gaps = 22/395 (5%)

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD- 298
            Y   I  L   G+     +L  +MKE GI+   +I+ ++++     G+ G+A  LL D 
Sbjct: 114 VYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDM 173

Query: 299 ----LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
               L +  +++   +   ++ G C       A  +F   +   ++P   T   ++    
Sbjct: 174 RAVYLCEPTFKSYDLVLEILVTGNCP----QVATNVFYDMLSKGVSPTVFTFGIVMKALC 229

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVP 413
               +D+   LL  M K      + + +     + ++ ++  AL + EE+   G    V 
Sbjct: 230 MFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQ 289

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            +N ++  L ++ ++  A  L  +M       +++++   +      G + EA     KI
Sbjct: 290 TFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEA----RKI 345

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           +     P+ A  N L  G    G++  A   + + + N    P  F Y + +  +C+ G 
Sbjct: 346 LIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGS 405

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
                +++NEM++ GC PN +  + +++G+CK G LEEA  V   +  R L    N+++Y
Sbjct: 406 LSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGL--TINSVIY 463

Query: 594 DEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
           + ++    +K+   + L+      L S++  KGCK
Sbjct: 464 NCLICALCRKEKVHVALN------LLSEMCTKGCK 492



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 16/223 (7%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G   N  +YN L + L R   F+ A                L ++  M    C  D   Y
Sbjct: 525 GAVANNVTYNTLIHALLRRGAFQKA----------------LTLVNDMLFRGCTLDKITY 568

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +I+      N++  L ++E+M  D + AD ++   +I GLCK G+V    E  R+   
Sbjct: 569 NGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAIN 628

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G + D   Y  ++ GL   G++ +A +L   L   G R D   YN+ I   C+    + 
Sbjct: 629 RGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVND 688

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
           A   F   +++   P   T N L+    +    +N F +L ++
Sbjct: 689 ACLFFYRGIENGFVPSNLTWNVLVYTLLKQSNQENNFFVLDEL 731


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 123/527 (23%), Positives = 222/527 (42%), Gaps = 64/527 (12%)

Query: 110 ELSKLRR----VTPDLVAEVLKVE-NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSR 164
           +L+KLR+    +TP  + ++L++  + PTL  + F   G QKGY H F  Y      L  
Sbjct: 66  DLTKLRKSRILITPVQLCKLLELPLDVPTLL-EIFERVGGQKGYCHTFDVYYVFINKLGA 124

Query: 165 NNLFRAADQVPELMDSQGRI-------------------AEMLEILEKMRR-NLCKPDVF 204
              F+  D++   M  +G +                    + + +L  MR   LC+P   
Sbjct: 125 IGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFK 184

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
           +Y  ++ +L           V+ +M    V   V  +  ++  LC    V     L R+M
Sbjct: 185 SYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDM 244

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            ++G + +  +Y  LI  L  + +V +A  LL+++   G   D+  +N +I GLC+V + 
Sbjct: 245 TKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKI 304

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--------------- 369
             A KL +  +     PD  T   LL     +G+++   K+L ++               
Sbjct: 305 HDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGY 364

Query: 370 ---------------EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-S 411
                            + F    D+  +   + G  KE  +  A D+  E+  +G   +
Sbjct: 365 VMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPN 424

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           V  Y IL+  L + G +++A  +  +M    L +NS+ ++  I        +  A    +
Sbjct: 425 VITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLS 484

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVC 529
           ++      P +  YN L  GLCK+  ID A  L  + L  G VA+  T   Y   I  + 
Sbjct: 485 EMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVT---YNTLIHALL 541

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           R G  +K + ++N+M   GC  +++  + +I   CK G +E+  +++
Sbjct: 542 RRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELY 588



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 156/371 (42%), Gaps = 35/371 (9%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PD+F Y  ++  L  E +L     +  EM +   E +V+ Y  L+ GLCK G +     
Sbjct: 387 QPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGL 446

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           +  EM   G+ I+  IY  LI  L  + KV  A +LL ++   G + DL  YNS+I GLC
Sbjct: 447 VLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLC 506

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +V + D+A++LF   + D    +  T N L+     + R   F K L  +  + F     
Sbjct: 507 KVDRIDEAFRLFHNMLLDGAVANNVTYNTLI---HALLRRGAFQKALTLVNDMLFR-GCT 562

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
           L+K                                YN L+ A  ++G ++K L L+ +M 
Sbjct: 563 LDKI------------------------------TYNGLIKAFCKVGNIEKGLELYEQMI 592

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              L  +++S +I I    + G +  A E     I    VP +  YN +  GLCK+G I 
Sbjct: 593 MDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIK 652

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A+ L  D L      P  F Y   I   C+ G             + G  P+ +  + +
Sbjct: 653 EALNLF-DRLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVL 711

Query: 560 ISGMCKHGTLE 570
           +  + K    E
Sbjct: 712 VYTLLKQSNQE 722



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 108/504 (21%), Positives = 204/504 (40%), Gaps = 51/504 (10%)

Query: 120 DLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD 179
           DLV E+L   N P +A+  F +    KG      ++  +   L    +F   D    L  
Sbjct: 187 DLVLEILVTGNCPQVATNVF-YDMLSKGVSPTVFTFGIVMKALC---MFNEVDSACSL-- 240

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
                      L  M ++ C P+   Y  +I  L+ +  +   L++ EEM       DV 
Sbjct: 241 -----------LRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQ 289

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL--- 296
            +  +I GLCK  ++    +L   M   G   D   YG L+ GL   GK+ +A  +L   
Sbjct: 290 TFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKI 349

Query: 297 -----------------------------KDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
                                        + +++ G++ D+  YN ++ GLC+      A
Sbjct: 350 PCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFA 409

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
             L     +    P+  T   L+    + G ++    +L +M     ++ + +       
Sbjct: 410 RDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICA 469

Query: 388 VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
           + ++E++ +AL++  E+  KG    +  YN L+  L ++  + +A  LF  M       N
Sbjct: 470 LCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVAN 529

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           +++++  I   +  G   +A    N ++          YN L K  CK+G I+  + L  
Sbjct: 530 NVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYE 589

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
             + +   G       + I  +C+ G+ +   E L +    G  P+ V  +++++G+CK 
Sbjct: 590 QMIMD-GLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKV 648

Query: 567 GTLEEARKVFTNLRERKLLTEANT 590
           G ++EA  +F  L+   +  +A T
Sbjct: 649 GRIKEALNLFDRLQVEGVRPDAFT 672



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 152/396 (38%), Gaps = 87/396 (21%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKM 194
           A  F +      G++ +  +YN L + L +                +G ++   +++ +M
Sbjct: 373 AQSFLNETMINFGFQPDIFTYNILMHGLCK----------------EGSLSFARDLVNEM 416

Query: 195 RRNLCKPDVFAYTAMIR-----------------------------------VLAAERNL 219
            R  C+P+V  Y  ++                                     L  +  +
Sbjct: 417 SRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKV 476

Query: 220 DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL 279
              L +  EM     + D+  Y +LI GLCK  R+     LF  M  +G + +   Y  L
Sbjct: 477 HVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTL 536

Query: 280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339
           I  L+  G   KA  L+ D++  G   D   YN +I   C+V   +K  +L+E  + D L
Sbjct: 537 IHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGL 596

Query: 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALD 399
             D  + N ++    ++G++DN F+ L                                 
Sbjct: 597 GADTISCNIMINGLCKVGKVDNAFEFL--------------------------------- 623

Query: 400 VFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV 458
              +   +G+   +  YN ++  L ++G +K+AL LF +++   +  ++ +++  I    
Sbjct: 624 --RDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQC 681

Query: 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           + G + +AC    + IE   VPS   +N L   L K
Sbjct: 682 KEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLK 717



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/395 (21%), Positives = 173/395 (43%), Gaps = 22/395 (5%)

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD- 298
            Y   I  L   G+     +L  +MKE GI+   +I+ ++++     G+ G+A  LL D 
Sbjct: 114 VYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDM 173

Query: 299 ----LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
               L +  +++   +   ++ G C       A  +F   +   ++P   T   ++    
Sbjct: 174 RAVYLCEPTFKSYDLVLEILVTGNCP----QVATNVFYDMLSKGVSPTVFTFGIVMKALC 229

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVP 413
               +D+   LL  M K      + + +     + ++ ++  AL + EE+   G    V 
Sbjct: 230 MFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQ 289

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            +N ++  L ++ ++  A  L  +M       +++++   +      G + EA     KI
Sbjct: 290 TFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEA----RKI 345

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           +     P+ A  N L  G    G++  A   + + + N    P  F Y + +  +C+ G 
Sbjct: 346 LIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGS 405

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
                +++NEM++ GC PN +  + +++G+CK G LEEA  V   +  R L    N+++Y
Sbjct: 406 LSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGL--TINSVIY 463

Query: 594 DEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
           + ++    +K+   + L+      L S++  KGCK
Sbjct: 464 NCLICALCRKEKVHVALN------LLSEMCTKGCK 492



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 16/223 (7%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G   N  +YN L + L R   F+ A                L ++  M    C  D   Y
Sbjct: 525 GAVANNVTYNTLIHALLRRGAFQKA----------------LTLVNDMLFRGCTLDKITY 568

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +I+      N++  L ++E+M  D + AD ++   +I GLCK G+V    E  R+   
Sbjct: 569 NGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAIN 628

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G + D   Y  ++ GL   G++ +A +L   L   G R D   YN+ I   C+    + 
Sbjct: 629 RGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVND 688

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
           A   F   +++   P   T N L+    +    +N F +L ++
Sbjct: 689 ACSFFYRGIENGFVPSNLTWNVLVYTLLKQSNQENNFFVLDEL 731


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 181/408 (44%), Gaps = 14/408 (3%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           + ++M     KPD   Y  +I    +       +R+ EEM    ++ D   Y +L+  LC
Sbjct: 260 VFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLC 319

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
             GR       F  M   GI  + AIYG+LI G   +G + +  DLL  +V++G   D  
Sbjct: 320 NNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHH 379

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
           I+N I     +    D+A  +F    Q  L+PD      L+    ++GR+D+      QM
Sbjct: 380 IFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQM 439

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
             +   VA ++  F   + G    ++   A + + E+  +G    V  +N ++  L   G
Sbjct: 440 --MNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKG 497

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
           +V KA  L   M  +    + +S++  I  H   G I EA +  + ++ +   P    YN
Sbjct: 498 QVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYN 557

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH----VCRSGEAEKIIEVLN 542
            L  G C+ G ID A  + R+ L N  + P    Y+ TILH      R  EA+   E+  
Sbjct: 558 TLLHGYCRAGRIDDAYGVFREMLRNGIT-PGVVTYS-TILHGLFTTRRFSEAK---ELYL 612

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            M   G   N  I + I++G+ K+  ++EA K+F +L  +    E  T
Sbjct: 613 NMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITT 660



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 191/427 (44%), Gaps = 17/427 (3%)

Query: 180 SQGRIAEMLEILEKM---RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           ++ R  E LE+L  M   +   C P+V +Y  +I     E  +D    ++ EM    ++ 
Sbjct: 177 NEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQP 236

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           +V+ Y T+I GLCK   V R   +F++M + G+  D   Y  LI G +  GK  +   +L
Sbjct: 237 NVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRML 296

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
           +++   G + D   Y S++  LC   +  +A   F+  ++  + P+ +    L+   A  
Sbjct: 297 EEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATK 356

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIY 415
           G +     LL  M +   S    +         K+  I  A+ +F ++K +G S  V  +
Sbjct: 357 GALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNF 416

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKI 473
             L+ AL ++G V  A+  F +M    +  N   F+  +   C V+  +  +A E + ++
Sbjct: 417 GALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWE--KAKEFYFEM 474

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           +     P V  +N +   LC  G++  A  L+ D +  V + P    Y   I   C  G 
Sbjct: 475 LNQGIRPDVVFFNTILCNLCTKGQVMKAQRLI-DLMERVGTRPDVISYTTLIGGHCLVGR 533

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT--- 590
            ++  + L+ M   G  P+E   + ++ G C+ G +++A  VF     R++L    T   
Sbjct: 534 IDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVF-----REMLRNGITPGV 588

Query: 591 IVYDEIL 597
           + Y  IL
Sbjct: 589 VTYSTIL 595



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 107/477 (22%), Positives = 194/477 (40%), Gaps = 60/477 (12%)

Query: 136 SKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG------------- 182
           ++FF  +  +KG K N A Y  L +  +          +  LM   G             
Sbjct: 327 ARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFT 386

Query: 183 ------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
                  I E + I  KM++    PDV  + A+I  L     +D  +  + +M  + V  
Sbjct: 387 AYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAP 446

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           ++  + +L+ GLC   +  +  E + EM   GI  D   +  ++  L  +G+V KA  L+
Sbjct: 447 NIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLI 506

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             +   G R D+  Y ++IGG C V + D+A K  +V +   L PD  T N LL      
Sbjct: 507 DLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRA 566

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVP 413
           GR+D+ + +  +M  L+  +   +  +   L G     R   A +++  +   G   ++ 
Sbjct: 567 GRIDDAYGVFREM--LRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIW 624

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           IYNI++  L +   V +A  LF  +   + ++   +F+I I    +SG   +A       
Sbjct: 625 IYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDA------- 677

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
             M    ++++Y  +                           P  F Y L   ++   G 
Sbjct: 678 --MHLFATISSYGLV---------------------------PDVFTYCLIAENLIEEGY 708

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            E+  ++ + M + G  PN  + +A++  +   G +  A    + L E+    EA+T
Sbjct: 709 LEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLSKLDEKNFSLEAST 765



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 140/290 (48%), Gaps = 27/290 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMI-------RVLAAERNLDACLRVWEEMKKD 232
           ++G++ +   +++ M R   +PDV +YT +I       R+  A ++LD  L V       
Sbjct: 495 TKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVG------ 548

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            ++ D   Y TL+ G C+ GR+   + +FREM  NGI      Y  ++ GL    +  +A
Sbjct: 549 -LKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEA 607

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
            +L  +++ SG + ++ IYN I+ GL +    D+A+KLF+     D   + +T N ++  
Sbjct: 608 KELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGA 667

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL-----DVFEELKGK 407
             + GR ++   L A +    + +  D+   F + +  E  I         D+F  ++  
Sbjct: 668 LFKSGRNEDAMHLFATIS--SYGLVPDV---FTYCLIAENLIEEGYLEEFDDLFSAMEKS 722

Query: 408 GYS-SVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAI 454
           G + +  + N L+  LL  G++ +A     K+  +  +LE ++ +  I++
Sbjct: 723 GTTPNSRMLNALVRRLLHRGDITRAGAYLSKLDEKNFSLEASTTAMLISL 772



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 155/353 (43%), Gaps = 10/353 (2%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           V  D+  Y  LI   C+ GR+  G   F  + ++G  ++  +   L++GL    ++ +A 
Sbjct: 90  VTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAM 149

Query: 294 D-LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD---DLAPDFSTVNPL 349
           D L+K + + G   D+  YN+++ G C  K+ ++A +L  +          P+  +   +
Sbjct: 150 DILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATV 209

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGK 407
           +      G++D  + L  +M  +   +  ++  +   + G  K + +  A  VF+++  K
Sbjct: 210 INGFFTEGQVDKAYNLFLEM--MDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDK 267

Query: 408 GYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           G       YN L+   L IG+ K+ + +  +M    L+ +  ++   +     +G   EA
Sbjct: 268 GVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREA 327

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
               + +I     P+VA Y  L  G    G +     L+   + N  S P    + +   
Sbjct: 328 RFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLS-PDHHIFNIIFT 386

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
              +    ++ + + N+M Q+G  P+ V   A+I  +CK G +++A   F  +
Sbjct: 387 AYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQM 439



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 15/185 (8%)

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y+IL+G    +G ++     FG +      VN++  +  ++   ++  + EA +   K +
Sbjct: 97  YSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDILIKRM 156

Query: 475 -EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV--------RDCLGNVASGPTEFKYALTI 525
            E+   P V +YN L KG C     + A+ L+        R C  NV S      YA  I
Sbjct: 157 PELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVS------YATVI 210

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
                 G+ +K   +  EM   G  PN V  + +I G+CK   ++ A  VF  + ++ + 
Sbjct: 211 NGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVK 270

Query: 586 TEANT 590
            + +T
Sbjct: 271 PDNDT 275


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 195/423 (46%), Gaps = 46/423 (10%)

Query: 189 EILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           EI++KM  +   KPD+  YT +I       N++  LR+  ++     + +V+ Y  L+  
Sbjct: 276 EIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSS 335

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK G+V    +L  EM+ N +  D   Y +LI GL  +GKV +A  L K++  +    +
Sbjct: 336 LCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPN 395

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
              ++ I+ GLC       A   F+  +  +L PD +  N ++         D + KL  
Sbjct: 396 SFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMI---------DGYVKL-- 444

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
                      D+E+              A+ +++ L+ K  + S+  +N L+    +  
Sbjct: 445 ----------GDVEE--------------AVRLYKRLRDKAITPSIVTFNSLIYGFCKNR 480

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV---PSVA 483
           +V +A  L   ++   LE ++++++  +  + E G+I    + H  ++EM+     P+V 
Sbjct: 481 KVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNI---NKLHELLLEMNLKDIEPTVV 537

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            Y  + KGLCK  +++ ++ L+ D        P +  Y   I   C++ +  K  E+L++
Sbjct: 538 TYTVVIKGLCKQRKLEESVQLLEDMRAK-GLAPDQITYNTIIQCFCKAKDMRKAFELLDD 596

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           M      P     + +I G+C++G +E+A +V  +L++R +      + Y  ++  H  K
Sbjct: 597 MLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNI--NLTKVAYTTMIKAHCVK 654

Query: 604 KTA 606
             A
Sbjct: 655 GDA 657



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 187/397 (47%), Gaps = 37/397 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ E L++L +M  N  +PD+  Y+ +I  L  +  +   +++++EM  + +  +  A
Sbjct: 339 RGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFA 398

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  ++ GLC+ G +      F  +  + +  D  +Y ++I+G V  G V +A  L K L 
Sbjct: 399 HSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLR 458

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D      +  +NS+I G C+ ++  +A +L E      L P   T   L+    E G ++
Sbjct: 459 DKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNIN 518

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
              +LL +M         D+E                             +V  Y +++ 
Sbjct: 519 KLHELLLEMN------LKDIE----------------------------PTVVTYTVVIK 544

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L +  ++++++ L   MR   L  + ++++  IQC  ++ D+ +A E  + ++  +  P
Sbjct: 545 GLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEP 604

Query: 481 SVAAYNCLTKGLCKIGEI-DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           + A YN L  GLC+ G++ DA  +LV   L +     T+  Y   I   C  G+A++ ++
Sbjct: 605 TPATYNVLIDGLCRYGDVEDADRVLV--SLQDRNINLTKVAYTTMIKAHCVKGDAQRAVK 662

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           V ++M ++G   +    SA+I+ +CK   + EA+  F
Sbjct: 663 VFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYF 699



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 129/585 (22%), Positives = 241/585 (41%), Gaps = 86/585 (14%)

Query: 92  ITDAFRK---NQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGY 148
           I   FR     QF  G      +  L +   D V E L V+N   +A  F+H +  + G+
Sbjct: 1   ILSGFRDLGFRQFVSGHYFKDLVLMLNQAQMDDVIENLSVQNADFVAD-FYHLSRNEFGF 59

Query: 149 KHNFASYNALAYCLSRNNLFR----AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           +H+  S   +++ L+R   F+      DQ+ +   +   + + L +L KM+    +P + 
Sbjct: 60  QHSRVSRFLVSHVLARKRRFKDLRLVLDQMLQEEVASRMVHDALFVLVKMKEQNLRPSIQ 119

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMK------------------------KDLV------ 234
            Y +++  L   R+ D    V+ ++K                        +D V      
Sbjct: 120 TYNSLLYNL---RHTDIMWDVYNDIKDSGTPQSARTSSIIVDGLCGQSRFRDAVLFLRQN 176

Query: 235 -----EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
                   V+++ T++   CK G        F  M + GIL D   Y +LI GL+  G +
Sbjct: 177 DGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSM 236

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD-LAPDFSTVNP 348
            +A +L  D+   G + D+  Y  +  G   +     A ++ +  + D+ L PD  T   
Sbjct: 237 EEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTV 296

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
           L+    +MG ++   +L   +    F +   L       + K  ++  AL +  E++   
Sbjct: 297 LICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANN 356

Query: 409 YS-SVPIYNILMGALLEIGEVKKALYLF----------------GKMRGL---------- 441
               +  Y+IL+  L + G+V++A+ L+                G ++GL          
Sbjct: 357 LQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDAR 416

Query: 442 ---------NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
                    NL  +   ++I I  +V+ GD+ EA   + ++ + +  PS+  +N L  G 
Sbjct: 417 MYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGF 476

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           CK  ++  A  L+ + +      P+   Y   +   C  G   K+ E+L EM  +   P 
Sbjct: 477 CKNRKVVEARRLL-ESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPT 535

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            V  + +I G+CK   LEE+ ++  ++R + L    + I Y+ I+
Sbjct: 536 VVTYTVVIKGLCKQRKLEESVQLLEDMRAKGL--APDQITYNTII 578



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 92/199 (46%), Gaps = 2/199 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q ++ E +++LE MR     PD   Y  +I+     +++     + ++M    +E     
Sbjct: 549 QRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPAT 608

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI GLC+ G V     +   +++  I + +  Y  +I+    +G   +A  +   +V
Sbjct: 609 YNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMV 668

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G+   +  Y+++I  LC+    ++A   F + + D ++PD      +L      G + 
Sbjct: 669 EKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHVH 728

Query: 361 NFFKLLAQMEKLKFSVAAD 379
           + F+LLA M  +KF +  D
Sbjct: 729 SVFELLAVM--IKFGLLHD 745


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 172/398 (43%), Gaps = 7/398 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD + YT +IR L     +   L + ++M     +  V+ Y  L+  +CK     +  E+
Sbjct: 143 PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEV 202

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             EM+  G   +   Y V+I G+  EG+V  A + L  L   G++ D   Y +++ GLC 
Sbjct: 203 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCA 262

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            K+++   +LF   ++ +  P+  T + L+      G ++   ++L QM     +    L
Sbjct: 263 AKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTL 322

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMR 439
                  + K+ R+  A      +   G S   I Y  ++  L      + A  L  +M 
Sbjct: 323 CNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 382

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
             N   N ++F+  I    + G I +A     ++ E     ++  YN L  G C  G +D
Sbjct: 383 RKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVD 442

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           +A+ L      ++   P    Y   +  +C +   +   E+L EM Q+ C PN V  + +
Sbjct: 443 SALEL----FYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVL 498

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +S  C+ G ++EA ++   + E       N I Y+ +L
Sbjct: 499 VSFFCQKGLMDEAIELVEQMMEHG--CTPNLITYNTLL 534



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 177/407 (43%), Gaps = 19/407 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E L +L+ M    C+P V  YT ++  +         + V +EM+      +++ 
Sbjct: 158 RGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVT 217

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G+C+ GRV    E    +   G   D   Y  +++GL    +     +L  +++
Sbjct: 218 YNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM 277

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +     +   ++ ++   CR    ++A ++ E       A + +  N ++    + GR+D
Sbjct: 278 EKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVD 337

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNI 417
           + F+ L  M    +  + D   +   L G  + ER   A ++ +E+  K      + +N 
Sbjct: 338 DAFQFLNNMG--SYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNT 395

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
            +  L + G +++A  L  +M     EVN ++++  +      G +  A E       M 
Sbjct: 396 FICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE---LFYSMP 452

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSG 532
             P+   Y  L  GLC    +DAA      ML +DC  NV +      + + +   C+ G
Sbjct: 453 CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVT------FNVLVSFFCQKG 506

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             ++ IE++ +M + GC PN +  + ++ G+      EEA ++   L
Sbjct: 507 LMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGL 553



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 184/417 (44%), Gaps = 14/417 (3%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           +AE   ++++       PDV+  T +IR L          RV    ++     DV AY T
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 118

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+ G C+ G++     L   M    +  D   Y  +I GL   G+VG+A  LL D++  G
Sbjct: 119 LVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 175

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            +  +  Y  ++  +C+   F +A ++ +        P+  T N ++      GR+D+  
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
           + L ++    F    D   +   L G    +R     ++F E+  K      + +++L+ 
Sbjct: 236 EFLNRLSSYGFQ--PDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVR 293

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
                G V++A+ +  +M G     N+   +I I    + G + +A +  N +      P
Sbjct: 294 FFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSP 353

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
              +Y  + KGLC+    + A  L+++ +      P E  +   I  +C+ G  E+   +
Sbjct: 354 DTISYTTVLKGLCRAERWEDAKELLKE-MVRKNCPPNEVTFNTFICILCQKGLIEQATML 412

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           + +M++ GC  N V  +A+++G C  G ++ A ++F ++       + NTI Y  +L
Sbjct: 413 IEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP-----CKPNTITYTTLL 464



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/486 (20%), Positives = 207/486 (42%), Gaps = 66/486 (13%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           + KG   N  +YN +   + R                +GR+ +  E L ++     +PD 
Sbjct: 207 RAKGCTPNIVTYNVIINGMCR----------------EGRVDDAREFLNRLSSYGFQPDT 250

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            +YT +++ L A +  +    ++ EM +     + + +  L+   C+GG V R  ++  +
Sbjct: 251 VSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQ 310

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M  +G   +  +  ++I  +  +G+V  A   L ++   G   D   Y +++ GLCR ++
Sbjct: 311 MSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAER 370

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           ++ A +L +  V+ +  P+  T N  +    + G ++    L+ QM +    V       
Sbjct: 371 WEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEV------- 423

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
                                      ++  YN L+      G V  AL LF  M     
Sbjct: 424 ---------------------------NIVTYNALVNGFCVQGRVDSALELFYSM---PC 453

Query: 444 EVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
           + N+++++  +   C+ E  D   A E   ++++    P+V  +N L    C+ G +D A
Sbjct: 454 KPNTITYTTLLTGLCNAERLD--AAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEA 511

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           + LV   + +    P    Y   +  +     +E+ +E+L+ +   G  P+ V  S+II 
Sbjct: 512 IELVEQMMEH-GCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIG 570

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESK 621
            + +   +EEA K+F  +++  +  +A  ++Y++IL+   K+   D     + FF   + 
Sbjct: 571 VLSREDRVEEAIKMFHIVQDLGMRPKA--VIYNKILLALCKRCNTD---GAIDFF---AY 622

Query: 622 LKAKGC 627
           + + GC
Sbjct: 623 MVSNGC 628



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 59/118 (50%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E LE+L  +  N   PD+  Y+++I VL+ E  ++  ++++  ++   +    + Y  ++
Sbjct: 545 EALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKIL 604

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           + LCK        + F  M  NG + +   Y  LIEGL  E  + +  DLL++L   G
Sbjct: 605 LALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRG 662


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/447 (22%), Positives = 197/447 (44%), Gaps = 53/447 (11%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           +G++ N  +Y  L + L +    RAA                + +L  M +  C+P+V  
Sbjct: 173 EGFQPNGVTYGTLIHGLCKVGNSRAA----------------IRLLRSMVQKNCEPNVIT 216

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  +I  L  +R ++  L ++ EM    +  +V  Y ++I GLCK         L  EM 
Sbjct: 217 YNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMV 276

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           ++ I+ +  I+  L++ L  EG V  A D++  ++  G   D+  Y +++ G C   + D
Sbjct: 277 DSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMD 336

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +A K+F+  V+   AP+  + + L+         + + K+                    
Sbjct: 337 EADKVFDTMVRKGCAPNVISYSTLI---------NGYCKI-------------------- 367

Query: 386 FLVGKEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                 +RI  A+ +FEE+ + +   ++  YN L+  L  +G ++ A+ LF +M      
Sbjct: 368 ------QRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQI 421

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            + +++ I +    ++  + +A      I   +  P + +YN +  G+C++GE++AA  L
Sbjct: 422 PDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDL 481

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
               L +    P  + Y + I  +C  G   +  ++  EM  +GC P++   + I  G  
Sbjct: 482 FSS-LSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFL 540

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTI 591
           ++     A ++   +  R    +A+TI
Sbjct: 541 RNNETLSAIQLLQEMLGRGFSADASTI 567



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 161/394 (40%), Gaps = 37/394 (9%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           I E L    +M      P V  +  ++  +A  ++    L + ++M    + +DV     
Sbjct: 55  IDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAI 114

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I   C   RV  G  +  ++ + G   D A +  LI GL  EGK+G+A  L   +V  G
Sbjct: 115 VINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEG 174

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
           ++ +   Y ++I GLC+V     A +L    VQ +  P+  T N ++ C           
Sbjct: 175 FQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDC----------- 223

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGAL 422
                                   + K+ ++  AL++F E+  KG S +V  YN ++  L
Sbjct: 224 ------------------------LFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGL 259

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            +  E K    L  +M    +  N + F+  +    + G +  A +  + +I+    P V
Sbjct: 260 CKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDV 319

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             Y  L  G C   E+D A   V D +      P    Y+  I   C+    +K + +  
Sbjct: 320 VTYTALMDGHCLRSEMDEADK-VFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFE 378

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           EM Q    PN V  + +I G+C  G L +A  +F
Sbjct: 379 EMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALF 412



 Score = 39.7 bits (91), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 177 LMDSQGRIAEML---EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           ++D   R+ E+    ++   +      PDV+ YT MI  L  +  L    +++ EM  D 
Sbjct: 465 VIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDG 524

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
              D   Y  +  G  +    +   +L +EM   G   D +   +++E L  +G
Sbjct: 525 CSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDG 578


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 189/397 (47%), Gaps = 4/397 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + E L++ ++M  +  +  + + T ++  L   R +D   +++ EM+ + +  D++ Y
Sbjct: 400 GNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITY 459

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI GLCK G V +   L+ +M  N I+ +  I+G ++ GL  +GK+ +A      L+ 
Sbjct: 460 STLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLIT 519

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           S    D+ +YN +I G  +     +A KL++   +  ++P   T N L+       ++  
Sbjct: 520 SNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQ 579

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
             +LL  ++       A        +  +E  +   L++  E+K K      I Y +++ 
Sbjct: 580 ARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIK 639

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L +  +++++  L   M  + L  + +S++  IQ   ++ D+ +A + ++K++  +  P
Sbjct: 640 GLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEP 699

Query: 481 SVAAYNCLTKGLCKIGEI-DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           +   YN L  G C  G++ DA  +LV   L N      ++ Y   I   C  G+ +K + 
Sbjct: 700 TSVTYNILINGFCVYGDLKDADNLLVS--LQNRKVNLNKYAYTTIIKAHCAKGDVDKAVV 757

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
              +M ++G   +    SA+I  +CK   + EA+  F
Sbjct: 758 YFRQMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFF 794



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 99/435 (22%), Positives = 200/435 (45%), Gaps = 20/435 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA---DV 238
           G + E L++   M  +  +PD+  Y  + +     R L      W  ++K L++    ++
Sbjct: 330 GSMGEALDLKNDMENHGLEPDMVTYNILAK---GFRLLGLINGAWNIIQKMLIKGPNPNL 386

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + Y  LI G C+ G V    +L++EM  +G  +      VL+  L    +V  A  L  +
Sbjct: 387 VTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCE 446

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +  +G R DL  Y+++I GLC+  +  +A  L+E    + + P+      +L+   E G+
Sbjct: 447 MEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGK 506

Query: 359 MDN---FFKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYS-SV 412
           +     +F  L     +  +++ D+  +   + G  +R     A+ ++++L  KG S ++
Sbjct: 507 ISQARMYFDYL-----ITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTI 561

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             +N LM       ++ +A  L   ++   LE N+++++  +  + E G++    E  ++
Sbjct: 562 VTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSE 621

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           +   +  P+   Y  + KGLCK  ++  +  L+ D +  V   P +  Y   I   C++ 
Sbjct: 622 MKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLED-MDAVGLTPDQVSYNTIIQAFCKAR 680

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           +  K  ++ ++M      P  V  + +I+G C +G L++A  +  +L+ RK+    N   
Sbjct: 681 DMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKV--NLNKYA 738

Query: 593 YDEILIEHMKKKTAD 607
           Y  I+  H  K   D
Sbjct: 739 YTTIIKAHCAKGDVD 753



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/470 (21%), Positives = 203/470 (43%), Gaps = 59/470 (12%)

Query: 206 YTAMIRV--LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           YT+ I V  L  +      +  +++ +    +  V+++ T++   CK G V      F  
Sbjct: 247 YTSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSFFCM 306

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M ++G+L D   Y +LI GL   G +G+A DL  D+ + G   D+  YN +  G   +  
Sbjct: 307 MLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILAKGFRLLGL 366

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            + A+ + +  +     P+  T   L+    ++G ++   KL  +M    F ++      
Sbjct: 367 INGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTV 426

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM---- 438
               + K  ++ +A  +F E++  G    +  Y+ L+  L + GEV++A+ L+ KM    
Sbjct: 427 LLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNR 486

Query: 439 ------------RGL-------------------NLEVNSLSFSIAIQCHVESGDILEAC 467
                        GL                   NL ++ + ++I I  +++ G+  EA 
Sbjct: 487 IIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAV 546

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
           + + ++ E    P++  +N L  G C   ++  A  L+ D +      P    Y   +  
Sbjct: 547 KLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLL-DTIKLHGLEPNAVTYTTLMNV 605

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
            C  G  + ++E+L+EM  +   P  +  + +I G+CK   L+E+ ++  ++    L  +
Sbjct: 606 YCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPD 665

Query: 588 A---NTIV---------------YDEILIEHMKKK--TADLVLSGLKFFG 617
               NTI+               YD++L+ +++    T +++++G   +G
Sbjct: 666 QVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYG 715



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 101/489 (20%), Positives = 200/489 (40%), Gaps = 49/489 (10%)

Query: 120 DLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSR----NNLFRAADQVP 175
           D + E L VE+  + A  F++    + G++H+  S   +++ L+R    N L    DQ+ 
Sbjct: 95  DQIIEHLNVEDADS-AVDFYYLLSNEFGFQHSRFSRLVVSHVLARKKRLNELRLVLDQML 153

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
            L +  G    + E+L    R+    +V  +  +    +    +   L V  +MK     
Sbjct: 154 -LHEGSGSAPSLCELLLGSFRSWDSSNV-VWDMLACAYSRSAMVHDALFVLVKMKDLNFI 211

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
             +  Y +L+  L     +    +++ E+K +G         ++++GL  + +   A   
Sbjct: 212 VSIQTYNSLLYNLRHSNIM---WDVYNEIKVSGTPQSEYTSSIVVDGLCRQSRFQDAVLF 268

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
            +D     ++  +  +N+I+   C++   D A   F + ++  L PD  + N L+     
Sbjct: 269 FQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCI 328

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPI 414
            G M                                     ALD+  +++  G    +  
Sbjct: 329 AGSMGE-----------------------------------ALDLKNDMENHGLEPDMVT 353

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YNIL      +G +  A  +  KM       N +++++ I  H + G++ EA + + ++I
Sbjct: 354 YNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMI 413

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                 S+ +   L   LCK  ++D A  L  +   N    P    Y+  I  +C+ GE 
Sbjct: 414 SHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEAN-GLRPDLITYSTLIHGLCKQGEV 472

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           ++ I +  +M      PN +I  AI+ G+C+ G + +AR  F  L    L    + I+Y+
Sbjct: 473 QQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNL--SLDIILYN 530

Query: 595 EILIEHMKK 603
            ++  ++K+
Sbjct: 531 IMIDGYIKR 539



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 121/263 (46%), Gaps = 9/263 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G   E +++ +++      P +  + +++      R L    R+ + +K   +E + + 
Sbjct: 539 RGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVT 598

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TL+   C+ G +    EL  EMK   I      Y V+I+GL  + K+ ++C LL+D+ 
Sbjct: 599 YTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMD 658

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D   YN+II   C+ +   KA++L++  +  +L P   T N L+      G + 
Sbjct: 659 AVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLK 718

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE----RIMMALDVFEELKGKGYS-SVPIY 415
           +   LL  ++  K     +L K+    + K       +  A+  F ++  KG+  S+  Y
Sbjct: 719 DADNLLVSLQNRK----VNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDY 774

Query: 416 NILMGALLEIGEVKKALYLFGKM 438
           + ++G L +   V +A Y F  M
Sbjct: 775 SAVIGRLCKRCLVTEAKYFFCMM 797



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 91/191 (47%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q ++ E  ++LE M      PD  +Y  +I+     R++    +++++M    +E   + 
Sbjct: 644 QWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVT 703

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G C  G +     L   ++   + +++  Y  +I+    +G V KA    + +V
Sbjct: 704 YNILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMV 763

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G+   +  Y+++IG LC+     +A   F + + D + PD      LL    + G ++
Sbjct: 764 EKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDGVCPDQDLFEVLLNAFHQCGHLN 823

Query: 361 NFFKLLAQMEK 371
           + F+LLA+M K
Sbjct: 824 SEFELLAEMIK 834


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 204/480 (42%), Gaps = 61/480 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++KG   +  +YN L    S                S+G + E  E++  M      P V
Sbjct: 262 QEKGVYPDIVTYNTLISAYS----------------SKGLMEEAFELMNAMPGKGFSPGV 305

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           + Y  +I  L      +    V+ EM +  +  D   Y +L+M  CK G VV   ++F +
Sbjct: 306 YTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSD 365

Query: 264 M-----------------------------------KENGILIDRAIYGVLIEGLVGEGK 288
           M                                   KE G++ D  IY +LI+G   +G 
Sbjct: 366 MRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGM 425

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           +  A +L  +++  G   D+  YN+I+ GLC+ K   +A KLF    +  L PD  T+  
Sbjct: 426 ISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTI 485

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKG 406
           L+    ++G + N  +L  +M++ +  +  D+  +   L   GK   I  A +++ ++  
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKR--IRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVS 543

Query: 407 KGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
           K     PI Y+IL+ AL   G + +A  ++ +M   N++   +  +  I+ +  SG+  +
Sbjct: 544 KEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASD 603

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYAL 523
                 K+I    VP   +YN L  G  +   +  A  LV+  +     G  P  F Y  
Sbjct: 604 GESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKK-MEEEQGGLVPDVFTYN- 661

Query: 524 TILH-VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           +ILH  CR  + ++   VL +M + G  P+    + +I+G      L EA ++   + +R
Sbjct: 662 SILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQR 721



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 118/570 (20%), Positives = 222/570 (38%), Gaps = 80/570 (14%)

Query: 112 SKLRRVTPDLVAEVL-KVENNPTLASKFFHWAGKQ-KGYKHNFASYNALAYCLSRNNLFR 169
           + L R+ P  V EVL +  N+ TL  +F    G     +KH   S +A+ + L R+    
Sbjct: 71  NHLIRLNPLAVVEVLYRCRNDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLS 130

Query: 170 AADQVPELMDSQGRIAEMLEILEKMRRNL--CKPDVFAYTAMIRVLAAERNLDACLRVWE 227
            A      M  +  ++  LEI+  +      C  +   +  +IR     R L      + 
Sbjct: 131 DAQSCLLRMIRRSGVSR-LEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFT 189

Query: 228 EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
            ++       + A   LI  L + G V     +++E+  +G+ I+     +++  L  +G
Sbjct: 190 LLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDG 249

Query: 288 KVGKACDLLKDLVDSGYRADLGIYN----------------------------------- 312
           K+ K    L  + + G   D+  YN                                   
Sbjct: 250 KMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYN 309

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
           ++I GLC+  ++++A ++F   ++  L+PD +T   LL+   + G +    K+ + M   
Sbjct: 310 TVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSR 369

Query: 373 K--------------FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-------- 410
                          F+ + +L+K   +    +E  ++  +V   +  +GY         
Sbjct: 370 DVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVA 429

Query: 411 --------------SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
                          V  YN ++  L +   + +A  LF +M    L  +S + +I I  
Sbjct: 430 MNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDG 489

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
           H + G++  A E   K+ E      V  YN L  G  K+G+ID A  +  D +      P
Sbjct: 490 HCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEIL-P 548

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           T   Y++ +  +C  G   +   V +EM  +   P  +IC+++I G C+ G   +     
Sbjct: 549 TPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFL 608

Query: 577 TNLRERKLLTEA---NTIVYDEILIEHMKK 603
             +     + +    NT++Y  +  E+M K
Sbjct: 609 EKMISEGFVPDCISYNTLIYGFVREENMSK 638



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 5/204 (2%)

Query: 177 LMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L+D  G++ ++    EI   M      P   +Y+ ++  L ++ +L    RVW+EM    
Sbjct: 521 LLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKN 580

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           ++  VM   ++I G C+ G    G     +M   G + D   Y  LI G V E  + KA 
Sbjct: 581 IKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAF 640

Query: 294 DLLKDLVD--SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
            L+K + +   G   D+  YNSI+ G CR  Q  +A  +    ++  + PD ST   ++ 
Sbjct: 641 GLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMIN 700

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFS 375
                  +   F++  +M +  FS
Sbjct: 701 GFVSQDNLTEAFRIHDEMLQRGFS 724



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 2/129 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL--VEADV 238
            G  ++    LEKM      PD  +Y  +I     E N+     + ++M+++   +  DV
Sbjct: 598 SGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDV 657

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
             Y +++ G C+  ++     + R+M E G+  DR+ Y  +I G V +  + +A  +  +
Sbjct: 658 FTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDE 717

Query: 299 LVDSGYRAD 307
           ++  G+  D
Sbjct: 718 MLQRGFSPD 726


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 184/404 (45%), Gaps = 42/404 (10%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           DVF +  +I   +  + +D    V  ++ K   E D + + +LI GLC   +  R  E F
Sbjct: 118 DVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFF 177

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            EM  +G   +   Y  +I+G    GK   A  LLK +  +G R D+ IYN+II GLC+ 
Sbjct: 178 DEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKD 237

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +   +A  +F       + PD  T + L+  +C ++            Q E+     A+ 
Sbjct: 238 RLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSD------------QKEE-----ASA 280

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
           L  F E         MM+L++  +        V  +NIL+  L + G + +A  +   M 
Sbjct: 281 L--FNE---------MMSLNIMPD--------VVTFNILVDKLCKEGMLSEAQGIIKIMI 321

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              +E N  +++  +  +     + EA    + +I    +P+V +YN L  G CK   ID
Sbjct: 322 EKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRID 381

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A  L  D +      P  F Y   I  +C++G   +  E+  +M  +GC P+ V C+ +
Sbjct: 382 EARELF-DEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTIL 440

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           +  +CK G L+ A ++F  +++  L  + N + YD ILI  M K
Sbjct: 441 LDSLCKLGYLDNALRLFRAMQDSCL--KPNLVTYD-ILIRAMYK 481



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 159/354 (44%), Gaps = 6/354 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+     +L K+ +   +PD   ++++I  L  E      +  ++EM     + ++  Y 
Sbjct: 134 RVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYN 193

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           T+I G CK G+      L ++M + G   D  IY  +I+GL  +  V +A D+  ++   
Sbjct: 194 TIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGK 253

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G R D+  Y+ ++ GLC   Q ++A  LF   +  ++ PD  T N L+    + G +   
Sbjct: 254 GVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEA 313

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKG-YSSVPIYNILM 419
             ++  M  ++  V  +   +   + G   + ++  A  VF+ +  KG   +V  YNIL+
Sbjct: 314 QGIIKIM--IEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILI 371

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               +   + +A  LF +M    L  N+ +++  I    ++G   EA E    +      
Sbjct: 372 NGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCS 431

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           P +     L   LCK+G +D A+ L R  + +    P    Y + I  + +SG+
Sbjct: 432 PDLVTCTILLDSLCKLGYLDNALRLFR-AMQDSCLKPNLVTYDILIRAMYKSGK 484



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 148/325 (45%), Gaps = 31/325 (9%)

Query: 147 GYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           GY+ N  +YN +   +C                    G+    + +L+KM +   +PD+ 
Sbjct: 184 GYQPNLHTYNTIIKGFC------------------KIGKTTVAVGLLKKMDKAGGRPDIV 225

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  +I  L  +R +   L ++ E+K   V  DV  Y  L+ GLC   +      LF EM
Sbjct: 226 IYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEM 285

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
               I+ D   + +L++ L  EG + +A  ++K +++ G   +   YNS++ G C   + 
Sbjct: 286 MSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKV 345

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +A  +F+  +     P+  + N L+    +  R+D   +L  +M     S    +   F
Sbjct: 346 FEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEM-----SFRGLIPNTF 400

Query: 385 EF--LVG---KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
            +  L+    +  R   A ++F++++ +G S  +    IL+ +L ++G +  AL LF  M
Sbjct: 401 NYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAM 460

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDI 463
           +   L+ N +++ I I+   +SG I
Sbjct: 461 QDSCLKPNLVTYDILIRAMYKSGKI 485



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 20/173 (11%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           +KG + N+A+YN+L   YCL                  Q ++ E   + + M    C P+
Sbjct: 322 EKGVEPNYATYNSLMNGYCL------------------QNKVFEARMVFDAMITKGCMPN 363

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V +Y  +I      + +D    +++EM    +  +   Y TLI GLC+ GR     ELF+
Sbjct: 364 VVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFK 423

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
           +M+  G   D     +L++ L   G +  A  L + + DS  + +L  Y+ +I
Sbjct: 424 DMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILI 476


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 178/407 (43%), Gaps = 67/407 (16%)

Query: 115 RRVTPDL---------VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLS 163
           RRV+PD+         +  + ++     +A     W     G   + A+YN+L   YC  
Sbjct: 185 RRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAW-----GLAPSVATYNSLIDGYCKK 239

Query: 164 RNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACL 223
                             G +  +  +L++M      P    +  +I       N  A +
Sbjct: 240 ---------------GGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAV 284

Query: 224 RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
           RV+EEMK+  + A V+ Y +LI GLC  G+V  G +L  EM++ G+  +   +G +++G 
Sbjct: 285 RVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGF 344

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
             +G +  A D +  + +     D+ IY  +I G  R+ + + A  + E   +  ++P+ 
Sbjct: 345 CKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNV 404

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE 403
           +T N L+                       FS + D                 A  + +E
Sbjct: 405 TTYNCLIT---------------------GFSRSGDWRS--------------ASGLLDE 429

Query: 404 LKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
           +K KG  + V  YN+L+GAL   GEV+KA+ L  +M  + LE N L+++  IQ   + G+
Sbjct: 430 MKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGN 489

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           I  A E   ++ +  +  +V  YN   K  C+IG++D A  L+ + L
Sbjct: 490 IKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEML 536



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 178/411 (43%), Gaps = 13/411 (3%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +P   +  A++  L   + +D   + +    +  V  D+  + T+I GLC+ G++ +  +
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD---LLKDLVDSGYRADLGIYNSIIG 316
           + +++K  G+    A Y  LI+G   +G  G       LLK++V++G       +  +I 
Sbjct: 213 VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLIN 272

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           G C+      A ++FE   Q  +A    T N L+      G+++   KL+ +ME L  S 
Sbjct: 273 GYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLS- 331

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP----IYNILMGALLEIGEVKKAL 432
             +   F   L G  ++ MMA D  + + G    +V     IY IL+     +G+++ A+
Sbjct: 332 -PNEITFGCVLKGFCKKGMMA-DANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAM 389

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            +   M    +  N  +++  I     SGD   A    +++ E      V  YN L   L
Sbjct: 390 AVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGAL 449

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           C  GE+  A+ L+ D +  V   P    Y   I   C  G  +   E+   M +     N
Sbjct: 450 CCKGEVRKAVKLL-DEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRAN 508

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
            V  +  I   C+ G ++EA  +   + ++ L+   N I Y+ I    M+K
Sbjct: 509 VVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVP--NGITYETIKEGMMEK 557



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ + + + E M +    P+V  Y  +I   +   +  +   + +EMK+  +EADV+ Y
Sbjct: 383 GKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTY 442

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI  LC  G V +  +L  EM E G+  +   Y  +I+G   +G +  A ++   +  
Sbjct: 443 NVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK 502

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
              RA++  YN  I   C++ + D+A  L    +   L P+  T
Sbjct: 503 CRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGIT 546


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 165/322 (51%), Gaps = 11/322 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           + R+++ + +++KM     +PD+ AY A+I  L   R ++  L  ++E+ +  +  +V+ 
Sbjct: 168 RNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVT 227

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ GLC  GR      L R+M +  I  +   Y  L++  V  GKV +A ++ +++V
Sbjct: 228 YTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMV 287

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 D+  Y+S+I GLC   + D+A ++F++ V     PD  + N L+    +  R++
Sbjct: 288 RMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVE 347

Query: 361 NFFKLLAQMEK---LKFSVAAD--LEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPI 414
           +  KL  +M +   +  +V  +  ++ FF+  VG  ++   A + F ++   G S  +  
Sbjct: 348 DGMKLFRKMSQRGLVNNTVTYNTLIQGFFQ--VGDVDK---AQEFFSQMDSFGVSPDIWT 402

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YNIL+G L + G ++KAL +F  M+   ++++ ++++  IQ   ++G + +A      + 
Sbjct: 403 YNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLS 462

Query: 475 EMSQVPSVAAYNCLTKGLCKIG 496
                P +  Y  +  GLC  G
Sbjct: 463 LKGLKPDIVTYTTMMSGLCTKG 484



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 179/389 (46%), Gaps = 6/389 (1%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           + D++ +  +I        +   L V  +M K   E D +   +L+ G C+  RV     
Sbjct: 117 RNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 176

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L  +M E G   D   Y  +I+ L    +V  A D  K++   G R ++  Y +++ GLC
Sbjct: 177 LVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLC 236

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
              +++ A +L    ++  + P+  T + LL    + G++    ++  +M  ++ S+  D
Sbjct: 237 NSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEM--VRMSIDPD 294

Query: 380 LEKFFEFLVGK--EERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFG 436
           +  +   + G    +RI  A  +F+ +  KG +  V  YN L+    +   V+  + LF 
Sbjct: 295 IVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFR 354

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           KM    L  N+++++  IQ   + GD+ +A E  +++      P +  YN L  GLC  G
Sbjct: 355 KMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNG 414

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            ++ A+++  D +           Y   I  +C++G+ E    +   ++ +G  P+ V  
Sbjct: 415 LLEKALVIFED-MQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTY 473

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLL 585
           + ++SG+C  G   E   ++T +++  L+
Sbjct: 474 TTMMSGLCTKGLQHEVEALYTKMKQEGLM 502



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 134/305 (43%), Gaps = 36/305 (11%)

Query: 85  LSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGK 144
           +S + + +   +R +   +   ++  L K RRV                 A  FF   G+
Sbjct: 175 VSLVDKMVEIGYRPDIVAYNA-IIDSLCKTRRVND---------------ALDFFKEIGR 218

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQV----------------PELMDS---QGRIA 185
            KG + N  +Y AL   L  +  +  A ++                  L+D+    G++ 
Sbjct: 219 -KGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVL 277

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E  EI E+M R    PD+  Y+++I  L     +D   ++++ M       DV++Y TLI
Sbjct: 278 EAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLI 337

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G CK  RV  G +LFR+M + G++ +   Y  LI+G    G V KA +    +   G  
Sbjct: 338 NGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVS 397

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  YN ++GGLC     +KA  +FE   + ++  D  T   ++    + G++++ + L
Sbjct: 398 PDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGL 457

Query: 366 LAQME 370
              + 
Sbjct: 458 FCSLS 462



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 146/351 (41%), Gaps = 46/351 (13%)

Query: 253 RVVRGHE---LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           R ++ H+   LFREM +         +  L+  +V   K      L K +   G R DL 
Sbjct: 62  RDIKLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLY 121

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            +N +I   C   Q   A  +    ++    PD  T+  L+       R+ +   L+ +M
Sbjct: 122 TFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 370 EKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
            ++ +    D+  +   +  + K  R+  ALD F+E+  KG   +V  Y  L+  L   G
Sbjct: 182 VEIGYR--PDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSG 239

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
               A  L   M    +  N +++S  +   V++G +LEA E   +++ MS  P +  Y+
Sbjct: 240 RWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYS 299

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L  GLC    ID                                 EA ++ ++   M  
Sbjct: 300 SLINGLCLHDRID---------------------------------EANQMFDL---MVS 323

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +GC P+ V  + +I+G CK   +E+  K+F  + +R L+   NT+ Y+ ++
Sbjct: 324 KGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVN--NTVTYNTLI 372



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 98/207 (47%), Gaps = 4/207 (1%)

Query: 397 ALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A+++F E+ K + + S+  +N L+ A++++ +    + L  KM  L +  +  +F+I I 
Sbjct: 69  AINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVIN 128

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
           C      +  A     K++++   P       L  G C+   +  A+ LV D +  +   
Sbjct: 129 CFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLV-DKMVEIGYR 187

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    Y   I  +C++      ++   E+ ++G  PN V  +A+++G+C  G   +A ++
Sbjct: 188 PDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARL 247

Query: 576 FTNLRERKLLTEANTIVYDEILIEHMK 602
             ++ +RK+    N I Y  +L   +K
Sbjct: 248 LRDMIKRKI--TPNVITYSALLDAFVK 272


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 179/377 (47%), Gaps = 15/377 (3%)

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKEN-GILIDRAIYGVLIEGLVGEGKVGKACDL 295
           D   Y  L+   C  G +    +L REM++  G+    ++Y   +  L   GKV +A ++
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
           +K++ D   + D+  +N++I GLC+  + D+A ++ +   +   A +  T N L+   + 
Sbjct: 77  VKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSS 136

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSS-- 411
            GR      ++  M     +   D + +   + G  K   I  A    EE+K +   S  
Sbjct: 137 AGRSGEAVLVMQGM-----TTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD 191

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGL-NLEVNSLSFSIAIQCHVESGDILEACECH 470
              Y+IL+  L +   ++KA  L  +M G  +   + ++F+  +  + ++ D+  A E  
Sbjct: 192 TFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELL 251

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
           + ++E    P V  Y+ +  GLC+ G++D    L+   +      P    Y + +  +C+
Sbjct: 252 SSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSR-GCKPDVVTYTVLVTGLCK 310

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +G+  +   ++  M ++GC PN V  S +  G+CK   L+ A  + T++R++  +T+   
Sbjct: 311 AGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITD--- 367

Query: 591 IVYDEILIEHMKKKTAD 607
           +V  E L+  +KK+  D
Sbjct: 368 VVAFEALLLSVKKRLLD 384



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 149/325 (45%), Gaps = 9/325 (2%)

Query: 182 GRIAEMLEILEKMRRN-LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           G +   +++L +M +     P    Y   +  L     +   + V + MK    + DV+ 
Sbjct: 32  GELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVT 91

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + TLI GLCK GR+    ++  EM+ +G   +   Y  LI GL   G+ G+A  +++ + 
Sbjct: 92  FNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMT 151

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ-DDLAPDFSTVNPLLVCCAEMGRM 359
            +    D   YN+II G C+  + D+AY   E   Q    +PD  T + L+    +   +
Sbjct: 152 TT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNL 208

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
               +LL +M   K    A +  F   + G  K + +  A ++   +   G +  V  Y+
Sbjct: 209 RKADELLQEMIGRK-DCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYS 267

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++  L   G+V K   L  KM     + + +++++ +    ++G ++EAC    +++E 
Sbjct: 268 TIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLED 327

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAA 501
              P+   Y+ +  GLCKI ++D A
Sbjct: 328 GCTPNAVTYSLVFDGLCKIDKLDMA 352



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 125/272 (45%), Gaps = 24/272 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM----DSQ------------GRIAEM 187
           ++ G+  N  +YN L   LS       A  V + M    D+Q            G I   
Sbjct: 116 ERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRA 175

Query: 188 LEILEKMR-RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM--KKDLVEADVMAYVTL 244
              LE+M+ R  C PD F Y+ +I  L    NL     + +EM  +KD   A V+A+ TL
Sbjct: 176 YGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCC-ASVVAFNTL 234

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + G CK   + R  EL   M E+G   D   Y  +I+GL   G V K   LL+ +V  G 
Sbjct: 235 VDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGC 294

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           + D+  Y  ++ GLC+  +  +A +L +  ++D   P+  T + +     ++ ++D    
Sbjct: 295 KPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMAND 354

Query: 365 LLAQM-EKLKFSVAADLEKFFEFLVGKEERIM 395
           LL  + +K + +   D+  F   L+  ++R++
Sbjct: 355 LLTSIRDKGRIT---DVVAFEALLLSVKKRLL 383


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 172/398 (43%), Gaps = 7/398 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD + YT +IR L     +   L + ++M     +  V+ Y  L+  +CK     +  E+
Sbjct: 143 PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEV 202

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             EM+  G   +   Y V+I G+  EG+V  A + L  L   G++ D   Y +++ GLC 
Sbjct: 203 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCA 262

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            K+++   +LF   ++ +  P+  T + L+      G ++   ++L QM     +    L
Sbjct: 263 AKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTL 322

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMR 439
                  + K+ R+  A      +   G S   I Y  ++  L      + A  L  +M 
Sbjct: 323 CNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 382

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
             N   N ++F+  I    + G I +A     ++ E     ++  YN L  G C  G +D
Sbjct: 383 RKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVD 442

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           +A+ L      ++   P    Y   +  +C +   +   E+L EM Q+ C PN V  + +
Sbjct: 443 SALEL----FYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVL 498

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +S  C+ G ++EA ++   + E       N I Y+ +L
Sbjct: 499 VSFFCQKGLMDEAIELVEQMMEHG--CTPNLITYNTLL 534



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 178/407 (43%), Gaps = 19/407 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E L +L+ M    C+P V  YT ++  +         + V +EM+      +++ 
Sbjct: 158 RGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVT 217

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G+C+ GRV    E    +   G   D   Y  +++GL    +     +L  +++
Sbjct: 218 YNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM 277

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +     +   ++ ++   CR    ++A ++ E       A + +  N ++    + GR+D
Sbjct: 278 EKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVD 337

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNI 417
           + F+ L  M    +  + D   +   L G  + ER   A ++ +E+  K      + +N 
Sbjct: 338 DAFQFLNNMG--SYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNT 395

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
            +  L + G +++A  L  +M     EVN ++++  +      G +  A E       M 
Sbjct: 396 FICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE---LFYSMP 452

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSG 532
             P+   Y  L  GLC    +DAA      ML +DC  NV +      + + +   C+ G
Sbjct: 453 CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVT------FNVLVSFFCQKG 506

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             ++ IE++ +M + GC PN +  + ++ G+ K    EEA ++   L
Sbjct: 507 LMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGL 553



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 184/417 (44%), Gaps = 14/417 (3%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           +AE   ++++       PDV+  T +IR L          RV    ++     DV AY T
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 118

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+ G C+ G++     L   M    +  D   Y  +I GL   G+VG+A  LL D++  G
Sbjct: 119 LVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 175

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            +  +  Y  ++  +C+   F +A ++ +        P+  T N ++      GR+D+  
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
           + L ++    F    D   +   L G    +R     ++F E+  K      + +++L+ 
Sbjct: 236 EFLNRLSSYGFQ--PDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVR 293

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
                G V++A+ +  +M G     N+   +I I    + G + +A +  N +      P
Sbjct: 294 FFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSP 353

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
              +Y  + KGLC+    + A  L+++ +      P E  +   I  +C+ G  E+   +
Sbjct: 354 DTISYTTVLKGLCRAERWEDAKELLKE-MVRKNCPPNEVTFNTFICILCQKGLIEQATML 412

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           + +M++ GC  N V  +A+++G C  G ++ A ++F ++       + NTI Y  +L
Sbjct: 413 IEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP-----CKPNTITYTTLL 464



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 101/486 (20%), Positives = 208/486 (42%), Gaps = 66/486 (13%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           + KG   N  +YN +   + R                +GR+ +  E L ++     +PD 
Sbjct: 207 RAKGCTPNIVTYNVIINGMCR----------------EGRVDDAREFLNRLSSYGFQPDT 250

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            +YT +++ L A +  +    ++ EM +     + + +  L+   C+GG V R  ++  +
Sbjct: 251 VSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQ 310

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M  +G   +  +  ++I  +  +G+V  A   L ++   G   D   Y +++ GLCR ++
Sbjct: 311 MSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAER 370

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           ++ A +L +  V+ +  P+  T N  +    + G ++    L+ QM +    V       
Sbjct: 371 WEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEV------- 423

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
                                      ++  YN L+      G V  AL LF  M     
Sbjct: 424 ---------------------------NIVTYNALVNGFCVQGRVDSALELFYSM---PC 453

Query: 444 EVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
           + N+++++  +   C+ E  D   A E   ++++    P+V  +N L    C+ G +D A
Sbjct: 454 KPNTITYTTLLTGLCNAERLD--AAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEA 511

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           + LV   + +    P    Y   +  + +   +E+ +E+L+ +   G  P+ V  S+II 
Sbjct: 512 IELVEQMMEH-GCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIG 570

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESK 621
            + +   +EEA K+F  +++  +  +A  ++Y++IL+   K+   D     + FF   + 
Sbjct: 571 VLSREDRVEEAIKMFHIVQDLGMRPKA--VIYNKILLALCKRCNTD---GAIDFF---AY 622

Query: 622 LKAKGC 627
           + + GC
Sbjct: 623 MVSNGC 628



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 59/118 (50%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E LE+L  +  N   PD+  Y+++I VL+ E  ++  ++++  ++   +    + Y  ++
Sbjct: 545 EALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKIL 604

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           + LCK        + F  M  NG + +   Y  LIEGL  E  + +  DLL++L   G
Sbjct: 605 LALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRG 662


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 179/377 (47%), Gaps = 15/377 (3%)

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKEN-GILIDRAIYGVLIEGLVGEGKVGKACDL 295
           D   Y  L+   C  G +    +L REM++  G+    ++Y   +  L   GKV +A ++
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
           +K++ D   + D+  +N++I GLC+  + D+A ++ +   +   A +  T N L+   + 
Sbjct: 77  VKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSS 136

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSS-- 411
            GR      ++  M     +   D + +   + G  K   I  A    EE+K +   S  
Sbjct: 137 AGRSGEAVLVMQGM-----TTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD 191

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGL-NLEVNSLSFSIAIQCHVESGDILEACECH 470
              Y+IL+  L +   ++KA  L  +M G  +   + ++F+  +  + ++ D+  A E  
Sbjct: 192 TFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELL 251

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
           + ++E    P V  Y+ +  GLC+ G++D    L+   +      P    Y + +  +C+
Sbjct: 252 SSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSR-GCKPDVVTYTVLVTGLCK 310

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +G+  +   ++  M ++GC PN V  S +  G+CK   L+ A  + T++R++  +T+   
Sbjct: 311 AGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTD--- 367

Query: 591 IVYDEILIEHMKKKTAD 607
           +V  E L+  +KK+  D
Sbjct: 368 VVAFETLLLSVKKRLLD 384



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 149/325 (45%), Gaps = 9/325 (2%)

Query: 182 GRIAEMLEILEKMRRN-LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           G +   +++L +M +     P    Y   +  L     +   + V + MK    + DV+ 
Sbjct: 32  GELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVT 91

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + TLI GLCK GR+    ++  EM+ +G   +   Y  LI GL   G+ G+A  +++ + 
Sbjct: 92  FNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMT 151

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ-DDLAPDFSTVNPLLVCCAEMGRM 359
            +    D   YN+II G C+  + D+AY   E   Q    +PD  T + L+    +   +
Sbjct: 152 TT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNL 208

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
               +LL +M   K    A +  F   + G  K + +  A ++   +   G +  V  Y+
Sbjct: 209 RKADELLQEMIGRK-DCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYS 267

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++  L   G+V K   L  KM     + + +++++ +    ++G ++EAC    +++E 
Sbjct: 268 TIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLED 327

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAA 501
              P+   Y+ +  GLCKI ++D A
Sbjct: 328 GCTPNAVTYSLVFDGLCKIDKLDMA 352



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 123/271 (45%), Gaps = 22/271 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM----DSQ------------GRIAEM 187
           ++ G+  N  +YN L   LS       A  V + M    D+Q            G I   
Sbjct: 116 ERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRA 175

Query: 188 LEILEKMR-RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM--KKDLVEADVMAYVTL 244
              LE+M+ R  C PD F Y+ +I  L    NL     + +EM  +KD   A V+A+ TL
Sbjct: 176 YGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCC-ASVVAFNTL 234

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + G CK   + R  EL   M E+G   D   Y  +I+GL   G V K   LL+ +V  G 
Sbjct: 235 VDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGC 294

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           + D+  Y  ++ GLC+  +  +A +L +  ++D   P+  T + +     ++ ++D    
Sbjct: 295 KPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMAND 354

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIM 395
           LL  +   K  V  D+  F   L+  ++R++
Sbjct: 355 LLTSIRD-KGRV-TDVVAFETLLLSVKKRLL 383


>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
          Length = 633

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 184/407 (45%), Gaps = 11/407 (2%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            E+ EKMRR   K D+FAY  ++  LA    +D   +V+E+MK++  + D   Y  LI  
Sbjct: 203 FEVYEKMRRKGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDAYTYTILIRM 262

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
             K G+  +   L  EM   G +++   Y  +IE L     V +A  +L  +++S  R +
Sbjct: 263 SGKAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPN 322

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF-KLL 366
              Y+ ++  L    Q  +  ++ ++       P +S +   L          + F ++ 
Sbjct: 323 QFTYSIMLDVLSTGGQLHRLNEILDICSGCLNRPVYSYLIKALCKSGHASEAHSVFCRMW 382

Query: 367 AQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYSS-VPIYNILMGALL 423
              EK       D   F   L  +   E+   A+D+   +  KG ++ V +YN++  AL 
Sbjct: 383 NSHEK------GDRYAFVSMLEALCNAEKTTEAIDLLHMMPEKGITTDVGMYNMIFSALG 436

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           ++ +V     L+  MR   +  +  +++I I      G + +A E   ++ + S  P V 
Sbjct: 437 KLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGLVDKASELFEEMEDGSCKPDVV 496

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            YN +   L K G++D A ML +D +      P  F Y++ I    +S + +    + +E
Sbjct: 497 TYNSMINCLGKNGDLDEAHMLFKD-MQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDE 555

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           M  +GC PN V  + ++  + + G   EA K +  L+++ L  ++ T
Sbjct: 556 MVAQGCIPNIVTYNILLDCLERRGKTTEAHKFYETLKQQGLTPDSIT 602



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 142/324 (43%), Gaps = 8/324 (2%)

Query: 170 AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
           A + V E +     + E + +L KM  + C+P+ F Y+ M+ VL+    L     + +  
Sbjct: 290 AYNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLDVLSTGGQLHRLNEILDIC 349

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
              L       Y  LI  LCK G     H +F  M  +    DR  +  ++E L    K 
Sbjct: 350 SGCLNRP---VYSYLIKALCKSGHASEAHSVFCRMWNSHEKGDRYAFVSMLEALCNAEKT 406

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            +A DLL  + + G   D+G+YN I   L ++KQ      L++    + + PD  T N +
Sbjct: 407 TEAIDLLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIM 466

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGK 407
           +     +G +D   +L  +ME    S   D+  +   +  +GK   +  A  +F++++ K
Sbjct: 467 ISSFGRVGLVDKASELFEEMED--GSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEK 524

Query: 408 GYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           GY   V  Y+IL+    +  +V  A  LF +M       N ++++I + C    G   EA
Sbjct: 525 GYDPDVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEA 584

Query: 467 CECHNKIIEMSQVPSVAAYNCLTK 490
            + +  + +    P    Y+ L +
Sbjct: 585 HKFYETLKQQGLTPDSITYSILER 608



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 107/468 (22%), Positives = 202/468 (43%), Gaps = 61/468 (13%)

Query: 200 KPDVFAYTAMIRVLAAERNLDA-CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           + D F+Y  ++ +L + R   A  +R+  EM++D V  ++ + V L++G+  G  V R  
Sbjct: 115 RHDAFSYNRILVLLFSNRADPAEAMRLIAEMERDGVPGNI-STVNLLVGM--GVEVGRCL 171

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           +L  +    G+ ++   Y  L++  +   +V K  ++ + +   GY+ D+  YN ++  L
Sbjct: 172 DLASKW---GLRLNGYTYKCLVQAHLRSREVWKGFEVYEKMRRKGYKLDIFAYNMLLNAL 228

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--------- 369
            +    D+AY++FE   Q+   PD  T   L+    + G+   F  LL +M         
Sbjct: 229 AKAGMVDQAYQVFEDMKQNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEEMVSEGCVLNL 288

Query: 370 -------EKLKFSVAADLEKF--------------FEFLV--------GKEERIMMALDV 400
                  E L  +   D   F              F + +        G+  R+   LD+
Sbjct: 289 IAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLDVLSTGGQLHRLNEILDI 348

Query: 401 FEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
                  G  + P+Y+ L+ AL + G   +A  +F +M   + + +  +F   ++    +
Sbjct: 349 CS-----GCLNRPVYSYLIKALCKSGHASEAHSVFCRMWNSHEKGDRYAFVSMLEALCNA 403

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
               EA +  + + E      V  YN +   L K+ ++ + M  + D +      P  F 
Sbjct: 404 EKTTEAIDLLHMMPEKGITTDVGMYNMIFSALGKLKQV-SFMSSLYDTMRANGVVPDVFT 462

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           Y + I    R G  +K  E+  EM    C P+ V  +++I+ + K+G L+EA  +F +++
Sbjct: 463 YNIMISSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQ 522

Query: 581 ERKLLTEANTIVYDEILIEHM-KKKTADLVLSGLKFFGLESKLKAKGC 627
           E+    + +   Y  ILIE   K    D+  S      L  ++ A+GC
Sbjct: 523 EKGY--DPDVFTY-SILIECFGKSNKVDMACS------LFDEMVAQGC 561



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 100/248 (40%), Gaps = 26/248 (10%)

Query: 141 WAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCK 200
           W   +KG ++ F S                   + E + +  +  E +++L  M      
Sbjct: 382 WNSHEKGDRYAFVS-------------------MLEALCNAEKTTEAIDLLHMMPEKGIT 422

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
            DV  Y  +   L   + +     +++ M+ + V  DV  Y  +I    + G V +  EL
Sbjct: 423 TDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGLVDKASEL 482

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F EM++     D   Y  +I  L   G + +A  L KD+ + GY  D+  Y+ +I    +
Sbjct: 483 FEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGK 542

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD---NFFKLLAQM----EKLK 373
             + D A  LF+  V     P+  T N LL C    G+      F++ L Q     + + 
Sbjct: 543 SNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAHKFYETLKQQGLTPDSIT 602

Query: 374 FSVAADLE 381
           +S+   LE
Sbjct: 603 YSILERLE 610


>gi|50582688|gb|AAT78758.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|108709716|gb|ABF97511.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1025

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 190/409 (46%), Gaps = 7/409 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK-KDLVEADVM 239
           +G++   L +L+ M      PD  AYT ++  L  E  + A   +++E+  K+ + AD +
Sbjct: 573 RGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCI 632

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           AY +++ G  KGG++     L R M EN +    A Y +L+ G + +G++ +   L +D+
Sbjct: 633 AYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDM 692

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V  G + D   Y  +I GLC     + A K  E  V + + PD    + L+   +E  +M
Sbjct: 693 VKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKM 752

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIYNI 417
            N  +L + M+ L  S ++  + +   + G  ++  +  + ++  ++   G      + I
Sbjct: 753 SNALQLFSYMKWLHMSPSS--KTYVAMVNGLIRKNWLQQSYEILHDMVESGLQPKHTHYI 810

Query: 418 -LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+ A   +G++  A  L   M+ L +  + ++ S  ++   + G + EA    + I+  
Sbjct: 811 ALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRA 870

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
             VP++A +  L  GLCK  +ID A  L +  + +         Y + I  +C       
Sbjct: 871 GMVPTIATFTTLMHGLCKEFKIDDAFHL-KQLMESCGLKVDVVTYNVLITGLCNKKCICD 929

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
            +++  EM  +G  PN      +   M   GT+++  K+  ++ +R ++
Sbjct: 930 ALDLYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIV 978



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/429 (21%), Positives = 198/429 (46%), Gaps = 33/429 (7%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +QG++++   +L+KM+ N   P+   Y  ++     +    + LR+ ++M+K+ +EAD+ 
Sbjct: 242 TQGKLSKAESMLQKMK-NCRLPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLY 300

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I  LCK  R  R + L + M+E  +  D   Y  LI G  GEGK+  A  +   +
Sbjct: 301 TYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQM 360

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYK-LFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +    +  +  Y ++I G CR  + D+A + L+E+ +      + S    +L C    G 
Sbjct: 361 LRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREVSKAKQILKCMLADGI 420

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL 418
             +     A + +    + A+ E+F +++     R+ ++ DV              +N +
Sbjct: 421 DPDVITYSALINE---GMIAEAEQFKQYM----SRMKISFDVAS------------FNCI 461

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + +  + G V +A  ++  M       +  ++   ++   + G +++A E    ++E + 
Sbjct: 462 IDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKAC 521

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
                  N L  G+CK G +D A+     M+ R+ L      P  + Y + +   C+ G+
Sbjct: 522 AIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNIL------PDTYTYTILLDGFCKRGK 575

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
               + +L  M ++G  P+ +  + +++G+   G ++ A  +F  +  ++ L  A+ I Y
Sbjct: 576 VVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLY-ADCIAY 634

Query: 594 DEILIEHMK 602
           + ++  ++K
Sbjct: 635 NSMMNGYLK 643



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 155/382 (40%), Gaps = 56/382 (14%)

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           +L+   V EGKV  A   +  + + G++A L   N+I+  L  + + +  +   + ++  
Sbjct: 165 LLVNAYVKEGKVLDAAAAIFFMDECGFKASLFSCNNILNALVGINKSEYVWLFLKESLDR 224

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA 397
               D +T N +L      G++     +L +M+  +   A        + V K+ R   A
Sbjct: 225 KFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMKNCRLPNAVTYNTILNWYV-KKGRCKSA 283

Query: 398 LDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
           L + ++++  G  + +  YNI++  L ++    +A  L  +MR +NL  +  S++  I  
Sbjct: 284 LRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHG 343

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD--------- 507
               G I  A    N+++  S  PSVA Y  L  G C+ G  D A  ++ +         
Sbjct: 344 FFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPR 403

Query: 508 ----------CL------------------GNVASGPTEFKYALTILHV----------- 528
                     C+                  G +A    +FK  ++ + +           
Sbjct: 404 EVSKAKQILKCMLADGIDPDVITYSALINEGMIAEAE-QFKQYMSRMKISFDVASFNCII 462

Query: 529 ---CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
              C+ G   +   V + M + G PP+     +++ G+C+ G L +A++    L E+   
Sbjct: 463 DSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACA 522

Query: 586 TEANTIVYDEILIEHMKKKTAD 607
            +  T+  + +L+   K  T D
Sbjct: 523 IDEKTL--NTLLVGICKHGTLD 542



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 104/261 (39%), Gaps = 36/261 (13%)

Query: 170 AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
           A D + +    + +++  L++   M+     P    Y AM+  L  +  L     +  +M
Sbjct: 738 AFDILIKAFSEKSKMSNALQLFSYMKWLHMSPSSKTYVAMVNGLIRKNWLQQSYEILHDM 797

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
            +  ++     Y+ LI   C+ G +    EL  +MK  G++        ++ GL   GKV
Sbjct: 798 VESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKV 857

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            +A  +   ++ +G    +  + +++ GLC+  + D A+ L ++     L  D  T N L
Sbjct: 858 EEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVL 917

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG- 408
           +                                     +  ++ I  ALD++EE+K KG 
Sbjct: 918 ITG-----------------------------------LCNKKCICDALDLYEEMKSKGL 942

Query: 409 YSSVPIYNILMGALLEIGEVK 429
             ++  Y  L GA+   G ++
Sbjct: 943 LPNITTYITLTGAMYATGTMQ 963



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 77/170 (45%), Gaps = 3/170 (1%)

Query: 177 LMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L++++ R+ ++    E+ E M+     P   A ++++R L     ++  + V+  + +  
Sbjct: 812 LINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAG 871

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +   +  + TL+ GLCK  ++     L + M+  G+ +D   Y VLI GL  +  +  A 
Sbjct: 872 MVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDAL 931

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
           DL +++   G   ++  Y ++ G +          KL +      + P +
Sbjct: 932 DLYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIVPSY 981


>gi|359483659|ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 114/481 (23%), Positives = 197/481 (40%), Gaps = 56/481 (11%)

Query: 128 VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEM 187
           V+ +  LA +F+       G   +  ++  L   L   N    A ++ ++M S+G+    
Sbjct: 209 VKEDIDLAREFYRKKMMMNGVSGDDYTFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNT 268

Query: 188 LEILEKMRRNLCK----------------PDVFAYTAMIRVLAAERNLDACLRVWEEMKK 231
           + I   M   LCK                P    +  +I     E NL   L + E+   
Sbjct: 269 V-IYNTMIHALCKNGKVGRARSLMNEMVEPSDVTFNVLISAYCQEENLVQALVLLEKSFS 327

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG--LVGEGKV 289
                DV+    ++  LCK GRV  G E+   ++  G ++D   Y  LI+G  ++G+ KV
Sbjct: 328 MGFVPDVVTATKVVGILCKAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKV 387

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
           G    +LKD+   G   ++  YN +  G C     D A  LF     D +  +F T + L
Sbjct: 388 GHR--VLKDMEIKGCLPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTL 445

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY 409
           +      GRM++ FK+L  M                                EE +G   
Sbjct: 446 IRGLCSGGRMEDGFKILELM--------------------------------EESRGGAG 473

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
             +  YN ++  L +  + ++AL    KM  L       S  I   C+   G I +A   
Sbjct: 474 GRISPYNSIIYGLYKKNQFEEALEFLTKMEKLFPRAVDRSLRILGFCN--EGSIGDAKRV 531

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
           ++++I+   VPSV  Y CL  G C+ G +  A  L+ + + +    PT   +   I   C
Sbjct: 532 YDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDH-GYFPTAPTFNALISAFC 590

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
             G+    ++++ +M   GC P+    S ++  +C  G  ++A ++F  + E+ +L + +
Sbjct: 591 GQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDILPDYS 650

Query: 590 T 590
           T
Sbjct: 651 T 651



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 111/249 (44%), Gaps = 26/249 (10%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD-----SQGRIA------------- 185
           K  G   NF +Y+ L   L          ++ ELM+     + GRI+             
Sbjct: 431 KTDGINWNFMTYDTLIRGLCSGGRMEDGFKILELMEESRGGAGGRISPYNSIIYGLYKKN 490

Query: 186 ---EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
              E LE L KM +    P     +  I     E ++    RV+++M K+     V+ YV
Sbjct: 491 QFEEALEFLTKMEKLF--PRAVDRSLRILGFCNEGSIGDAKRVYDQMIKEGGVPSVLVYV 548

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI G C+ G V    EL  EM ++G       +  LI    G+GKVG A  L++D+V  
Sbjct: 549 CLIHGFCQDGNVREAFELINEMVDHGYFPTAPTFNALISAFCGQGKVGSALKLMEDMVGR 608

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG---RM 359
           G   D+G Y+ ++  LC    F KA +LF   V+ D+ PD+ST N +L+C  +       
Sbjct: 609 GCLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDILPDYSTWNSMLLCLTQETVWLEG 668

Query: 360 DNFFKLLAQ 368
           DN F L  Q
Sbjct: 669 DNLFHLQLQ 677



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 115/508 (22%), Positives = 218/508 (42%), Gaps = 54/508 (10%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177
           T   +A ++  + + + A + F WA     + HN ++Y AL + L     FR  + V E+
Sbjct: 93  THQHIAHLILEQKSASQALQTFRWASNLPNFIHNQSTYRALIHKLCS---FRRFETVKEV 149

Query: 178 MDSQ--------------------GR---IAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
           +D                      GR   + +M+++L+ + +    P +  + +++ VL 
Sbjct: 150 LDEMPSSIGSPPDESIFVTIVRGLGRARMVRQMIKVLDLITKFGENPSLKIFNSILDVLV 209

Query: 215 AERNLDACLRVW-EEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
            E ++D     + ++M  + V  D   +  L+ GLC   R+    +L + MK  G   + 
Sbjct: 210 KE-DIDLAREFYRKKMMMNGVSGDDYTFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNT 268

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
            IY  +I  L   GKVG+A  L+ ++V+    +D+  +N +I   C+ +   +A  L E 
Sbjct: 269 VIYNTMIHALCKNGKVGRARSLMNEMVEP---SDV-TFNVLISAYCQEENLVQALVLLEK 324

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA----DLEKFFEFLVG 389
           +      PD  T   ++    + GR+    ++L ++E +   V       L K F  L G
Sbjct: 325 SFSMGFVPDVVTATKVVGILCKAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCML-G 383

Query: 390 KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           K +   +   V ++++ KG   +V  YNIL     + G +  A+ LF  M+   +  N +
Sbjct: 384 KAK---VGHRVLKDMEIKGCLPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNFM 440

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVP------SVAAYNCLTKGLCKIGEIDAAM 502
           ++   I+     G +    E   KI+E+ +         ++ YN +  GL K  + + A+
Sbjct: 441 TYDTLIRGLCSGGRM----EDGFKILELMEESRGGAGGRISPYNSIIYGLYKKNQFEEAL 496

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
             +          P     +L IL  C  G       V ++M +EG  P+ ++   +I G
Sbjct: 497 EFLTKM---EKLFPRAVDRSLRILGFCNEGSIGDAKRVYDQMIKEGGVPSVLVYVCLIHG 553

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANT 590
            C+ G + EA ++   + +      A T
Sbjct: 554 FCQDGNVREAFELINEMVDHGYFPTAPT 581



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 160/403 (39%), Gaps = 57/403 (14%)

Query: 144 KQKGYKHNFASYNALAYCLSRNN-LFRAADQVPELMD--------------SQGRIAEML 188
           K +G   N   YN + + L +N  + RA   + E+++               +  + + L
Sbjct: 260 KSRGKTPNTVIYNTMIHALCKNGKVGRARSLMNEMVEPSDVTFNVLISAYCQEENLVQAL 319

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
            +LEK       PDV   T ++ +L     +   + V E ++      DV+AY TLI G 
Sbjct: 320 VLLEKSFSMGFVPDVVTATKVVGILCKAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGF 379

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C  G+   GH + ++M+  G L +   Y +L  G    G +  A DL  D+   G   + 
Sbjct: 380 CMLGKAKVGHRVLKDMEIKGCLPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNF 439

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQD--DLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
             Y+++I GLC   + +  +K+ E+  +         S  N ++    +  + +   + L
Sbjct: 440 MTYDTLIRGLCSGGRMEDGFKILELMEESRGGAGGRISPYNSIIYGLYKKNQFEEALEFL 499

Query: 367 AQMEKLKFSVAAD-----LEKFFEFLVGKEERIM-------------------------- 395
            +MEKL F  A D     L    E  +G  +R+                           
Sbjct: 500 TKMEKL-FPRAVDRSLRILGFCNEGSIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDG 558

Query: 396 ---MALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
               A ++  E+   GY  + P +N L+ A    G+V  AL L   M G     +  S+S
Sbjct: 559 NVREAFELINEMVDHGYFPTAPTFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYS 618

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN----CLTK 490
             +      GD  +A     +++E   +P  + +N    CLT+
Sbjct: 619 PMVDALCNKGDFQKAVRLFLQMVEKDILPDYSTWNSMLLCLTQ 661



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 155/366 (42%), Gaps = 22/366 (6%)

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKEN-GILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
            Y  LI  LC   R     E+  EM  + G   D +I+  ++ GL     V +   +L  
Sbjct: 129 TYRALIHKLCSFRRFETVKEVLDEMPSSIGSPPDESIFVTIVRGLGRARMVRQMIKVLDL 188

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMG 357
           +   G    L I+NSI+  L + +  D A + + +  + + ++ D  T   L+       
Sbjct: 189 ITKFGENPSLKIFNSILDVLVK-EDIDLAREFYRKKMMMNGVSGDDYTFGILMKGLCLTN 247

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNI 417
           R+ + FKLL  M+    +    +       + K  ++  A  +  E+      S   +N+
Sbjct: 248 RIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCKNGKVGRARSLMNEMV---EPSDVTFNV 304

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ A  +   + +AL L  K   +    + ++ +  +    ++G + E  E   ++  M 
Sbjct: 305 LISAYCQEENLVQALVLLEKSFSMGFVPDVVTATKVVGILCKAGRVTEGVEVLERVESMG 364

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-----CLGNVASGPTEFKYALTILHVCRSG 532
            V  V AYN L KG C +G+      +++D     CL NV +      Y +     C SG
Sbjct: 365 GVVDVVAYNTLIKGFCMLGKAKVGHRVLKDMEIKGCLPNVDT------YNILASGYCDSG 418

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK-----LLTE 587
             +  I++ N+M  +G   N +    +I G+C  G +E+  K+   + E +      ++ 
Sbjct: 419 MLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGGRMEDGFKILELMEESRGGAGGRISP 478

Query: 588 ANTIVY 593
            N+I+Y
Sbjct: 479 YNSIIY 484



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 17/208 (8%)

Query: 147 GYKHNFASYNALAYCLSRNNLF---------------RAADQVPELMD--SQGRIAEMLE 189
           G     + YN++ Y L + N F               RA D+   ++   ++G I +   
Sbjct: 471 GAGGRISPYNSIIYGLYKKNQFEEALEFLTKMEKLFPRAVDRSLRILGFCNEGSIGDAKR 530

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           + ++M +    P V  Y  +I     + N+     +  EM           +  LI   C
Sbjct: 531 VYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGYFPTAPTFNALISAFC 590

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
             G+V    +L  +M   G L D   Y  +++ L  +G   KA  L   +V+     D  
Sbjct: 591 GQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDILPDYS 650

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
            +NS++  L +   + +   LF + +QD
Sbjct: 651 TWNSMLLCLTQETVWLEGDNLFHLQLQD 678



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/205 (19%), Positives = 85/205 (41%), Gaps = 20/205 (9%)

Query: 84  HLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTL--ASKFFHW 141
            +SP    I   ++KNQF+   + +T++ KL     D    +L   N  ++  A + +  
Sbjct: 475 RISPYNSIIYGLYKKNQFEEALEFLTKMEKLFPRAVDRSLRILGFCNEGSIGDAKRVYDQ 534

Query: 142 AGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD------------------SQGR 183
             K+ G          +       N+  A + + E++D                   QG+
Sbjct: 535 MIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGYFPTAPTFNALISAFCGQGK 594

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           +   L+++E M    C PD+ +Y+ M+  L  + +    +R++ +M +  +  D   + +
Sbjct: 595 VGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDILPDYSTWNS 654

Query: 244 LIMGLCKGGRVVRGHELFREMKENG 268
           +++ L +    + G  LF    ++G
Sbjct: 655 MLLCLTQETVWLEGDNLFHLQLQDG 679


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/408 (22%), Positives = 177/408 (43%), Gaps = 4/408 (0%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
            E MR +  KP+V  YT++I   A  R+++  +   EEM    ++ +   + ++I G   
Sbjct: 154 FEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYAS 213

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
            G        F + K   ++    +Y  +++     G +     LL  + + G++ +LG+
Sbjct: 214 AGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGL 273

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           Y +++ G   ++  +K    F       L+P  +T   ++    + G M     +L +M+
Sbjct: 274 YTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMD 333

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVK 429
           K   S    +         +      A  V+E++   G    +  YNIL+ A  + G + 
Sbjct: 334 KHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMD 393

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
           KAL +   ++   L     +++  +  +V+ G I +A E  ++I      P V +YN L 
Sbjct: 394 KALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLL 453

Query: 490 KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
            GL K  +++ A +++ + L N    P E  Y        R+G+ EK   +   M +E  
Sbjct: 454 SGLAKARQMENARLMLDEMLANGVV-PNERSYTALTEGYARAGDVEKAFGMFQRMKKENL 512

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             + V   A++   CK G ++ A +VF  + +  L  + N I Y  +L
Sbjct: 513 AIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGL--KHNRITYCTML 558



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 178/407 (43%), Gaps = 14/407 (3%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
            EK +     P    Y ++++      N++    +  +M+++  + ++  Y T++ G  +
Sbjct: 224 FEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAE 283

Query: 251 GGRVVRGHE----LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
               +R  E     F  +K  G+    A YG +++     G + KA D+L+++   G   
Sbjct: 284 ----IRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSP 339

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           +  IY  I+ G  R   F  A+K++E  V   L PD  T N L+    + GRMD    +L
Sbjct: 340 NKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVL 399

Query: 367 AQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
             ++  +  +   +E +   L G  K   I  AL+VF+ +K  G    V  YN L+  L 
Sbjct: 400 ENIQANR--LLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLA 457

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           +  +++ A  +  +M    +  N  S++   + +  +GD+ +A     ++ + +    + 
Sbjct: 458 KARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIV 517

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           AY  L K  CK G +  A+ + +  + +         Y   +    R GE  K  ++L +
Sbjct: 518 AYGALLKACCKSGAMQRAVEVFQQ-ITDAGLKHNRITYCTMLDGWARKGELSKARDLLKD 576

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           M + G   + +  ++ I    + G  EE  +    +RE+KL   A T
Sbjct: 577 MQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNART 623



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 150/332 (45%), Gaps = 5/332 (1%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           + +L    G +A+ L+ILE+M ++   P+   Y  ++   A   +  A  +VWE+M    
Sbjct: 312 IVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAG 371

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           ++ D++ Y  L+   CK GR+ +   +   ++ N +L     Y  +++G V  G + KA 
Sbjct: 372 LKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKAL 431

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           ++   +  +G R  +  YNS++ GL + +Q + A  + +  + + + P+  +   L    
Sbjct: 432 EVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGY 491

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSS 411
           A  G ++  F +  +M+K   ++  D+  +   L    K   +  A++VF+++   G   
Sbjct: 492 ARAGDVEKAFGMFQRMKKENLAI--DIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKH 549

Query: 412 VPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
             I Y  ++      GE+ KA  L   M+     ++++ ++  I+    SGD  E  E  
Sbjct: 550 NRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETL 609

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
             + E     +   Y  L  G     + D A+
Sbjct: 610 AVMREKKLEVNARTYTTLIHGWLAAADPDQAI 641



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 139/339 (41%), Gaps = 12/339 (3%)

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+    + G  V     F  M+ + I  +  IY  LI        +  A    ++++
Sbjct: 134 YGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEML 193

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + +  ++ SII G       + A   FE    ++L P     N ++    + G M+
Sbjct: 194 SQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNME 253

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG-----KEERIMMALDVFEELKGKGYS-SVPI 414
               LLAQME+  F    +L  +   L G      EE+    L  F  LK  G S +   
Sbjct: 254 TVEALLAQMEEEGFQ--GNLGLYTTVLNGFAEIRDEEK---CLSFFHRLKACGLSPTAAT 308

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y  ++    + G + KAL +  +M    +  N + +++ +  +   GD   A +    ++
Sbjct: 309 YGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMV 368

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                P +  YN L    CK G +D A+ ++ +   N    PT   Y   +    + G  
Sbjct: 369 SAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLL-PTIETYTSILDGYVKGGHI 427

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
           +K +EV + +   G  P  V  ++++SG+ K   +E AR
Sbjct: 428 QKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENAR 466



 Score = 38.9 bits (89), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 11/130 (8%)

Query: 155 YNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
           +N + YC   +   R           +G +++  ++L+ M+++    D   YT+ I+   
Sbjct: 549 HNRITYCTMLDGWAR-----------KGELSKARDLLKDMQKHGFHLDTICYTSFIKACF 597

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
              + +        M++  +E +   Y TLI G        +    + + K +G+ +D A
Sbjct: 598 RSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLDSA 657

Query: 275 IYGVLIEGLV 284
           +   L+ GL+
Sbjct: 658 LSNCLLSGLI 667


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 173/408 (42%), Gaps = 74/408 (18%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G ++ + ++++ M    C P+   Y  +I  L  +  LD  + + E M       + + 
Sbjct: 270 KGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVT 329

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI GL K  R + G  L   M+E G  +++ IY VLI GL  EGK  +A  L K + 
Sbjct: 330 YGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMA 389

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G R ++ +Y+++I GLCR  + ++A ++    +     P+  T + L         M 
Sbjct: 390 EKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSL---------MK 440

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILM 419
            FFK                        G  E    A+ V+ E+   G S     Y++L+
Sbjct: 441 GFFK-----------------------TGLSEE---AIQVWREMDETGCSRNEFCYSVLI 474

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L  +G VK+A+ ++ KM            +I I+                        
Sbjct: 475 DGLCGVGRVKEAMMVWSKM-----------LTIGIK------------------------ 499

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYALTILHVCRSGEAEKI 537
           P   AY+ + KGLC IG +DAA+ L  +  C     S P    Y + +  +C   +  + 
Sbjct: 500 PDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRA 559

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMC-KHGTLEEARKVFTNLRERKL 584
           +++LN M   GC P+ + C+  ++ +  K  + EE R     L  R L
Sbjct: 560 VDLLNCMLDRGCDPDVITCNTFLNTLSEKSDSCEEGRSFLEELVARLL 607



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 91/209 (43%), Gaps = 19/209 (9%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           +KG + N   Y+A+   L R                +G+  E  EIL  M  + C P+V+
Sbjct: 390 EKGCRPNIVVYSAVIDGLCR----------------EGKPNEAKEILNGMISSGCLPNVY 433

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y+++++        +  ++VW EM +     +   Y  LI GLC  GRV     ++ +M
Sbjct: 434 TYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKM 493

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV---DSGYRADLGIYNSIIGGLCRV 321
              GI  D   Y  +I+GL G G +  A  L  +++   +   + D+  YN ++ GLC  
Sbjct: 494 LTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQ 553

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           K   +A  L    +     PD  T N  L
Sbjct: 554 KDVSRAVDLLNCMLDRGCDPDVITCNTFL 582



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 130/272 (47%), Gaps = 15/272 (5%)

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV---GKEERIMMALDV 400
           ST++ ++   A +G   +  KLL+   +++      +E+ F  +    GK      A+D+
Sbjct: 78  STLSSMIENYANLGDFASVEKLLS---RIRLENRVIIERSFIVVFRAYGKAHLPEKAVDL 134

Query: 401 FEEL--KGKGYSSVPIYNILMGALLEIGEVKKAL----YLFGKMRGLNLEVNSLSFSIAI 454
           F  +  + +   SV  +N ++  ++  G   + L    Y+      +N+  N LSF++ I
Sbjct: 135 FHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVI 194

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
           +   + G +  A E    + E   +P    Y  L  GLCK   ID A++L+ D + +   
Sbjct: 195 KALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLL-DEMQSEGC 253

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P+   Y + I  +C+ G+  ++ ++++ M  +GC PNEV  + +I G+C  G L++A  
Sbjct: 254 SPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVS 313

Query: 575 VFTNLRERKLLTEANTIVYDEILIEHMKKKTA 606
           +   +   K +   N + Y  ++   +K++ A
Sbjct: 314 LLERMVSSKCI--PNDVTYGTLINGLVKQRRA 343


>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
 gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
          Length = 795

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 129/545 (23%), Positives = 226/545 (41%), Gaps = 68/545 (12%)

Query: 81  LQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVEN--NPTLASKF 138
           L+ +L      I    +  Q   G +++  + KL  + PD  +    V+      L+SK 
Sbjct: 203 LKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLD-LKPDSYSYCTLVDGYCRDGLSSKA 261

Query: 139 FHWAGK--QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRR 196
           F+   +  +KG +    +YN L   L R   ++ A ++  LM  +G              
Sbjct: 262 FNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRG-------------- 307

Query: 197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
               P+   Y  ++  L    +    L +W+++    +   + A+ T+I GLCK G +  
Sbjct: 308 --VTPNEVGYCTLLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDG 365

Query: 257 GHELFREMKENGILIDRA-----------------------------------IYGVLIE 281
             E F+ M+E G   D                                     +Y  LI 
Sbjct: 366 AKETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIV 425

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
           GL    K+ K  DLL ++   G   ++  Y ++I G C   + DKA+  +   +    AP
Sbjct: 426 GLFTSKKISKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKAFSAYFEMIGKGFAP 485

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD---LEKFFEFLVGKEERIMMAL 398
           +    + ++     +GR+D    LL +M  + F +  D   LE F    + K +   +A 
Sbjct: 486 NVIICSKIVSSLYRLGRIDEANMLLQKM--VDFDLVLDHRCLEDFQNADIRKLDCWKIA- 542

Query: 399 DVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           D  +E   K   S+P   +YNI M  L + G+V  A   F  +   +   ++ ++   I 
Sbjct: 543 DTLDESAIK--FSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIH 600

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
               +G + EA    ++++    VP++  YN L  GLCK G +D A  L  D L      
Sbjct: 601 GFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLF-DKLHLKGLI 659

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    Y + I   C+SG   + +++  +M +EG  P+ +  S++I+G CK   +EEA K+
Sbjct: 660 PNVVTYNILIDGYCKSGSPREALDLRGKMLKEGISPSIITYSSLINGFCKQSDVEEAMKL 719

Query: 576 FTNLR 580
              ++
Sbjct: 720 LNEMK 724



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/457 (22%), Positives = 195/457 (42%), Gaps = 44/457 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G++ E   +L  MR+   KPD ++Y  ++     +        V ++M +  +E  V+ 
Sbjct: 220 NGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVT 279

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TL+ GLC+ G       L+  M + G+  +   Y  L++GL   G   +A  L  D++
Sbjct: 280 YNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDIL 339

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE--------------VTVQDDLA------ 340
             G    +  +N++I GLC++ + D A + F+               T+ D         
Sbjct: 340 ARGINKSIYAFNTMINGLCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKVGNVE 399

Query: 341 ---------------PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
                          P     N L+V      ++     LLA+M+    S   ++  +  
Sbjct: 400 EAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLLAEMDTRGLS--PNVVTYGA 457

Query: 386 FLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            + G   + R+  A   + E+ GKG++ +V I + ++ +L  +G + +A  L  KM   +
Sbjct: 458 LIAGWCDQGRLDKAFSAYFEMIGKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVDFD 517

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           L ++           +   D  +  +  ++      +P+   YN    GLCK G+++ A 
Sbjct: 518 LVLDHRCLEDFQNADIRKLDCWKIADTLDESAIKFSLPNNVVYNIAMAGLCKSGKVNDAR 577

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
                 L + +  P  F Y   I     +G   +   + +EM  +G  PN    +A+++G
Sbjct: 578 RFFLG-LSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNG 636

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           +CK G L+ AR++F  L  + L+   N + Y+ ILI+
Sbjct: 637 LCKSGYLDRARRLFDKLHLKGLI--PNVVTYN-ILID 670



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 105/450 (23%), Positives = 192/450 (42%), Gaps = 46/450 (10%)

Query: 168 FRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWE 227
            R+ + +   +  +G     + + ++MRR    PDVF    M+        ++  +    
Sbjct: 31  LRSCNSLLSNLVKRGESYSAVLVYDQMRRLDIVPDVFTCAIMVNAYCKAGKVERAVEFVR 90

Query: 228 EMKKDLVEADVMAY-----------------------------------VTLIMGLCKGG 252
           EM+K   E + ++Y                                     LI G CK  
Sbjct: 91  EMEKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLKFMSEKGVMRNKVTLTLLIKGYCKQC 150

Query: 253 RVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           +V    ++ REM KE+G+++D   YG LI+G    GK+G A  +  +++  G + +L + 
Sbjct: 151 KVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMGDAIRVRDEMLKVGLKMNLFVC 210

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           NS+I G C+  Q  +  +L     + DL PD  +   L+      G     F +  QM  
Sbjct: 211 NSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQM-- 268

Query: 372 LKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEV 428
           L+  +   +  +   L G  +      AL ++  +  +G +   + Y  L+  L ++G+ 
Sbjct: 269 LRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLLDGLFKMGDF 328

Query: 429 KKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            +AL L+  +  RG+N  +   +F+  I    + G++  A E   ++ E+   P    Y 
Sbjct: 329 SRALTLWDDILARGINKSI--YAFNTMINGLCKMGEMDGAKETFKRMEELGCKPDGITYR 386

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L+ G CK+G ++ A  +    +      P+   Y   I+ +  S +  K+I++L EM  
Sbjct: 387 TLSDGYCKVGNVEEAFKIKEK-MEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLLAEMDT 445

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVF 576
            G  PN V   A+I+G C  G L++A   +
Sbjct: 446 RGLSPNVVTYGALIAGWCDQGRLDKAFSAY 475



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 180/409 (44%), Gaps = 38/409 (9%)

Query: 181 QGRIAEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           Q ++ E  ++L +M + +    D +AY A+I        +   +RV +EM K  ++ ++ 
Sbjct: 149 QCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMGDAIRVRDEMLKVGLKMNLF 208

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
              +LI G CK G+V  G  L   M++  +  D   Y  L++G   +G   KA ++   +
Sbjct: 209 VCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQM 268

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G    +  YN+++ GLCR   +  A +L+ + +Q  + P+      LL         
Sbjct: 269 LRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLL--------- 319

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
           D  FK+             D  +              AL +++++  +G + S+  +N +
Sbjct: 320 DGLFKM------------GDFSR--------------ALTLWDDILARGINKSIYAFNTM 353

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L ++GE+  A   F +M  L  + + +++      + + G++ EA +   K+ +   
Sbjct: 354 INGLCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEI 413

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            PS+  YN L  GL    +I   + L+ + +      P    Y   I   C  G  +K  
Sbjct: 414 FPSIEMYNSLIVGLFTSKKISKLIDLLAE-MDTRGLSPNVVTYGALIAGWCDQGRLDKAF 472

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
               EM  +G  PN +ICS I+S + + G ++EA  +   + +  L+ +
Sbjct: 473 SAYFEMIGKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVDFDLVLD 521



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 178/403 (44%), Gaps = 21/403 (5%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G +   L + + M +   KP + +  +++  L       + + V+++M++  +  DV  
Sbjct: 9   KGMVKNALHVFDNMGKYGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRLDIVPDVFT 68

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
              ++   CK G+V R  E  REM++ G  ++   Y  L++G V  G +  A  +LK + 
Sbjct: 69  CAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLKFMS 128

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           + G   +      +I G C+  + ++A K+  E+  +D +  D      L+    ++G+M
Sbjct: 129 EKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKM 188

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--------KEERIMMALDVFEELKGKGYSS 411
            +  ++  +M  LK  +  +L      + G        + ER++M +    +LK   YS 
Sbjct: 189 GDAIRVRDEM--LKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKL-DLKPDSYS- 244

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
              Y  L+      G   KA  +  +M    +E   ++++  ++     GD  +A    +
Sbjct: 245 ---YCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWH 301

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL--HVC 529
            +++    P+   Y  L  GL K+G+   A+ L  D L   A G  +  YA   +   +C
Sbjct: 302 LMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDIL---ARGINKSIYAFNTMINGLC 358

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           + GE +   E    M + GC P+ +    +  G CK G +EEA
Sbjct: 359 KMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEA 401



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/376 (20%), Positives = 173/376 (46%), Gaps = 5/376 (1%)

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           +++V A +  +   L V++ M K   +  + +  +L+  L K G       ++ +M+   
Sbjct: 2   ILKVYAEKGMVKNALHVFDNMGKYGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRLD 61

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
           I+ D     +++      GKV +A + ++++   G+  +   YNS++ G   +   + A 
Sbjct: 62  IVPDVFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAK 121

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
            + +   +  +  +  T+  L+    +  +++   K+L +MEK +  V  D   +   + 
Sbjct: 122 GVLKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEK-EDGVVVDEYAYGALID 180

Query: 389 G--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
           G  K  ++  A+ V +E+   G   ++ + N L+    + G+V +   L   MR L+L+ 
Sbjct: 181 GYCKVGKMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKP 240

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           +S S+   +  +   G   +A    ++++     P+V  YN L KGLC+ G+   A+ L 
Sbjct: 241 DSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLW 300

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
              L    + P E  Y   +  + + G+  + + + +++   G   +    + +I+G+CK
Sbjct: 301 HLMLQRGVT-PNEVGYCTLLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCK 359

Query: 566 HGTLEEARKVFTNLRE 581
            G ++ A++ F  + E
Sbjct: 360 MGEMDGAKETFKRMEE 375



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/401 (22%), Positives = 170/401 (42%), Gaps = 42/401 (10%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           E  ++M    CKPD   Y  +        N++   ++ E+M+K+ +   +  Y +LI+GL
Sbjct: 368 ETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGL 427

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
               ++ +  +L  EM   G+  +   YG LI G   +G++ KA     +++  G+  ++
Sbjct: 428 FTSKKISKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKAFSAYFEMIGKGFAPNV 487

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA------PDFSTVNPLLVCCAEMGRM--- 359
            I + I+  L R+ + D+A  L +  V  DL        DF   +   + C ++      
Sbjct: 488 IICSKIVSSLYRLGRIDEANMLLQKMVDFDLVLDHRCLEDFQNADIRKLDCWKIADTLDE 547

Query: 360 --------DNFFKLLAQMEKLKFSVAADLEKFFEFL------------------VGKEER 393
                   +N    +A     K     D  +FF  L                        
Sbjct: 548 SAIKFSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGY 607

Query: 394 IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           +  A ++ +E+  KG   ++  YN L+  L + G + +A  LF K+    L  N ++++I
Sbjct: 608 VNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNI 667

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGN 511
            I  + +SG   EA +   K+++    PS+  Y+ L  G CK  +++ AM L+ +    N
Sbjct: 668 LIDGYCKSGSPREALDLRGKMLKEGISPSIITYSSLINGFCKQSDVEEAMKLLNEMKASN 727

Query: 512 VASGPTEFKYALTILHVC-RSGEAEKIIEVLNEMTQEGCPP 551
           V      F     ++  C + G+ +K+ + L+ M    CP 
Sbjct: 728 VDQTIATFS---KLVEGCIQHGDVKKMSK-LHNMMHMACPS 764



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 7/172 (4%)

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           E G VK AL++F  M     + +  S +  +   V+ G+   A   ++++  +  VP V 
Sbjct: 8   EKGMVKNALHVFDNMGKYGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRLDIVPDVF 67

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
               +    CK G+++ A+  VR+ +  +        Y   +      G+ E    VL  
Sbjct: 68  TCAIMVNAYCKAGKVERAVEFVRE-MEKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLKF 126

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           M+++G   N+V  + +I G CK   +EEA KV   LRE   + + + +V DE
Sbjct: 127 MSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKV---LRE---MEKEDGVVVDE 172



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 65/151 (43%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           + G + E   + ++M      P++  Y A++  L     LD   R+++++    +  +V+
Sbjct: 604 AAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVV 663

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI G CK G      +L  +M + GI      Y  LI G   +  V +A  LL ++
Sbjct: 664 TYNILIDGYCKSGSPREALDLRGKMLKEGISPSIITYSSLINGFCKQSDVEEAMKLLNEM 723

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
             S     +  ++ ++ G  +     K  KL
Sbjct: 724 KASNVDQTIATFSKLVEGCIQHGDVKKMSKL 754


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 133/578 (23%), Positives = 239/578 (41%), Gaps = 76/578 (13%)

Query: 35  NRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARF--I 92
           N  S    +S S  H  PP ++Q  D             S        RH  PI +F  I
Sbjct: 17  NFSSFLQNSSHSHFHSQPP-SIQNVD----------DAVSQFNRMLCMRHTPPIIQFNKI 65

Query: 93  TDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQK----GY 148
            D+F K +       ++   +L+ + PDL+   + +     +    F ++   K    GY
Sbjct: 66  LDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGY 125

Query: 149 KHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
             +  + N L    CL                  +G++ + L   +K+     + +  +Y
Sbjct: 126 PPDTVTLNTLIKGLCL------------------KGQVKKALHFHDKLLAQGFQLNQVSY 167

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +I  +    +  A +++ +++   L + +V+ Y T+I  LCK   V   + LF EM  
Sbjct: 168 GTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTV 227

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            GI  D   Y  LI G   EGK+ +A  LL ++V      ++  YN ++  LC+  +  +
Sbjct: 228 KGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKE 287

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A  +  V ++  + PD  T + L         MD +F L+ +++K               
Sbjct: 288 AKSVLAVMLKACVKPDVITYSTL---------MDGYF-LVYEVKK--------------- 322

Query: 387 LVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
                     A  VF  +   G +  V  Y IL+    +   V +AL LF +M   N+  
Sbjct: 323 ----------AQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVP 372

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
             +++S  I    +SG I    +  +++ +  Q  +V  Y+ L  GLCK G +D A+ L 
Sbjct: 373 GIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALF 432

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
              + +    P  F + + +  +C+ G  +   EV  ++  +G   N    + +I G CK
Sbjct: 433 NK-MKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCK 491

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
            G LEEA  + + + +   + +A  + ++ I+I   KK
Sbjct: 492 QGLLEEALTMLSKMEDNGCIPDA--VTFEIIIIALFKK 527



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/459 (22%), Positives = 201/459 (43%), Gaps = 13/459 (2%)

Query: 173 QVPELMDSQGRI---AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
           Q  +++DS  ++   +  + +  ++     +PD+     +I        +     V  ++
Sbjct: 61  QFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKI 120

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
            K     D +   TLI GLC  G+V +      ++   G  +++  YG LI G+   G  
Sbjct: 121 LKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDT 180

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
             A  LL+ +     + ++ +Y++II  LC+ +   +AY LF       ++ D  T + L
Sbjct: 181 RAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTL 240

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE-ELKGKG 408
           +      G++     LL +M     +            + KE ++  A  V    LK   
Sbjct: 241 IYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACV 300

Query: 409 YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
              V  Y+ LM     + EVKKA ++F  M  + +  +  +++I I    ++  + EA  
Sbjct: 301 KPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALN 360

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
              ++ + + VP +  Y+ L  GLCK G I     L+ D + +         Y+  I  +
Sbjct: 361 LFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLI-DEMHDRGQPANVITYSSLIDGL 419

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C++G  ++ I + N+M  +G  PN    + ++ G+CK G L++A++VF +L  +      
Sbjct: 420 CKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGY--HL 477

Query: 589 NTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
           N   Y+ ++  H K+   +  L+ L      SK++  GC
Sbjct: 478 NVYTYNVMIDGHCKQGLLEEALTML------SKMEDNGC 510



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 2/191 (1%)

Query: 182  GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
            G+I     IL K+ +    PD   +T +I  L  +  ++  L   +++     + + ++Y
Sbjct: 975  GQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSY 1034

Query: 242  VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             TLI G+CK G      +L R++       D  +Y  +I+ L     V KA  L  ++  
Sbjct: 1035 GTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNV 1094

Query: 302  SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR--M 359
             G  AD+  YN++I G C V +  +A  L    V   + P+  T N L+    + G+  +
Sbjct: 1095 KGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLL 1154

Query: 360  DNFFKLLAQME 370
            D    +L++ME
Sbjct: 1155 DESLSMLSKME 1165



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 112/263 (42%), Gaps = 38/263 (14%)

Query: 200  KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
            +PD+F    +I        +     +  ++ K     D + + TLI GLC  G+V +   
Sbjct: 958  QPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALH 1017

Query: 260  LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
               ++   G  +++  YG LI G+   G    A  LL+ +     + D+ +YN+II  LC
Sbjct: 1018 FHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALC 1077

Query: 320  RVKQFDKAYKL-FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
            + +   KAY L FE+ V+  ++ D  T N L+     +G++     LL +M         
Sbjct: 1078 KHQLVSKAYGLFFEMNVK-GISADVVTYNTLIYGFCIVGKLKEAIGLLNKM--------- 1127

Query: 379  DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE--VKKALYLFG 436
                           ++  ++           +V  YNIL+ AL + G+  + ++L +  
Sbjct: 1128 ---------------VLKTIN----------PNVRTYNILVDALCKEGKDLLDESLSMLS 1162

Query: 437  KMRGLNLEVNSLSFSIAIQCHVE 459
            KM     + N+++F I I    E
Sbjct: 1163 KMEDNGCKANAVTFEIIISALFE 1185



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 7/213 (3%)

Query: 416  NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
            NIL+     +G++     +  K+       ++++F+  I      G + +A   H+K++ 
Sbjct: 965  NILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLA 1024

Query: 476  MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
                 +  +Y  L  G+CKIG+  AA+ L+R   G +   P    Y   I  +C+     
Sbjct: 1025 QGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTK-PDVVMYNTIIDALCKHQLVS 1083

Query: 536  KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
            K   +  EM  +G   + V  + +I G C  G L+EA  +   +  + +    N   Y+ 
Sbjct: 1084 KAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTI--NPNVRTYN- 1140

Query: 596  ILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
            IL++ + K+  DL+   L      SK++  GCK
Sbjct: 1141 ILVDALCKEGKDLLDESLSML---SKMEDNGCK 1170



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 119/270 (44%), Gaps = 8/270 (2%)

Query: 321  VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            +K +  A  L        + PD  T+N L+ C   MG++   F +LA++  LK     D 
Sbjct: 939  MKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKI--LKRGYHPDT 996

Query: 381  EKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGK 437
              F   + G   + ++  AL   ++L  +G+    + Y  L+  + +IG+ + A+ L  K
Sbjct: 997  ITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRK 1056

Query: 438  MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
            + G   + + + ++  I    +   + +A     ++        V  YN L  G C +G+
Sbjct: 1057 IDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGK 1116

Query: 498  IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE--AEKIIEVLNEMTQEGCPPNEVI 555
            +  A+ L+   +    + P    Y + +  +C+ G+   ++ + +L++M   GC  N V 
Sbjct: 1117 LKEAIGLLNKMVLKTIN-PNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVT 1175

Query: 556  CSAIISGMCKHGTLEEARKVFTNLRERKLL 585
               IIS + +    ++  K+   +  R LL
Sbjct: 1176 FEIIISALFEKDENDKVEKLLHEMIARGLL 1205



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 2/191 (1%)

Query: 181  QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            +G++ + L   +K+     + +  +Y  +I  +    +  A +++  ++   L + DV+ 
Sbjct: 1009 KGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVM 1068

Query: 241  YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
            Y T+I  LCK   V + + LF EM   GI  D   Y  LI G    GK+ +A  LL  +V
Sbjct: 1069 YNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMV 1128

Query: 301  DSGYRADLGIYNSIIGGLCRVKQ--FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
                  ++  YN ++  LC+  +   D++  +      +    +  T   ++    E   
Sbjct: 1129 LKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDE 1188

Query: 359  MDNFFKLLAQM 369
             D   KLL +M
Sbjct: 1189 NDKVEKLLHEM 1199



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 4/159 (2%)

Query: 448  LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
             + +I I C    G I        KI++    P    +  L  GLC  G+++ A+    D
Sbjct: 962  FTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHF-HD 1020

Query: 508  CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
             L        +  Y   I  VC+ G+    I++L ++      P+ V+ + II  +CKH 
Sbjct: 1021 KLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQ 1080

Query: 568  TLEEARKVFTNLRERKLLTEA---NTIVYDEILIEHMKK 603
             + +A  +F  +  + +  +    NT++Y   ++  +K+
Sbjct: 1081 LVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKE 1119



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 59/291 (20%), Positives = 113/291 (38%), Gaps = 37/291 (12%)

Query: 260  LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
            L   ++  GI  D     +LI      G++     +L  ++  GY  D   + ++I GLC
Sbjct: 948  LSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLC 1007

Query: 320  RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
               Q +KA    +  +      +  +   L+    ++G      KLL +++         
Sbjct: 1008 LKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKID--------- 1058

Query: 380  LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
                     G+  +                  V +YN ++ AL +   V KA  LF +M 
Sbjct: 1059 ---------GRLTK----------------PDVVMYNTIIDALCKHQLVSKAYGLFFEMN 1093

Query: 440  GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE-- 497
               +  + ++++  I      G + EA    NK++  +  P+V  YN L   LCK G+  
Sbjct: 1094 VKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDL 1153

Query: 498  IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
            +D ++ ++     N         + + I  +    E +K+ ++L+EM   G
Sbjct: 1154 LDESLSMLSKMEDN-GCKANAVTFEIIISALFEKDENDKVEKLLHEMIARG 1203


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 129/591 (21%), Positives = 237/591 (40%), Gaps = 93/591 (15%)

Query: 114 LRRVTPDLVAEVL-KVENNPTLASKFFHWAGKQ-KGYKHNFASYNALAYCLSRNNLFRAA 171
           L R+ P  V EVL +  N+ +L  +F    G     +KH   S +A+ + L R+     A
Sbjct: 63  LIRLNPLAVVEVLYRCRNDLSLGQRFVDQLGFNFPNFKHTSLSLSAMIHILVRSGRLSDA 122

Query: 172 DQVPELMDSQGRIA--EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL---------- 219
                 M  +  ++  E++  L     N C  +   +  +IR     R L          
Sbjct: 123 QSCVLRMIRRSGVSRVEIVNSLVSTYSN-CGSNDSVFDLLIRTFVQARKLREAYEAFTLL 181

Query: 220 ---------DAC----------------LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
                    DAC                 R+++E+ +  V  +V     ++  LCK G++
Sbjct: 182 RSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKM 241

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
            +      E++E G+  D   Y  LI     +G + +A +L+  +   G+   +  YN++
Sbjct: 242 EKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTV 301

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG---RMDNFFK------- 364
           I GLC+  ++++A ++F   ++  L+PD +T   LL+   + G     +N F        
Sbjct: 302 INGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDV 361

Query: 365 -----LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS--------- 410
                  + M  L F+ + +L+K   +    +E  ++  +V   +  +GY          
Sbjct: 362 VPDLVCFSSMMSL-FTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAM 420

Query: 411 -------------SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
                         V  YN ++  L +   + +A  LF +M    L  +S + +I I  H
Sbjct: 421 NLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGH 480

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
            + G++  A E   K+ E      V  YN L  G  K+G+ID A  +  D +      PT
Sbjct: 481 CKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEIL-PT 539

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
              +++ +  +C  G   +   V +EM  +   P  +IC+++I G C+ G   +      
Sbjct: 540 PISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLE 599

Query: 578 NLRERKLLTEA---NTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAK 625
            +     + +    NT++Y  +  E+M K            FGL  K++ K
Sbjct: 600 KMISEGFVPDCISYNTLIYGFVKEENMSKA-----------FGLVKKMEEK 639



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 115/480 (23%), Positives = 203/480 (42%), Gaps = 61/480 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++KG   +  +YN L    S                SQG + E  E++  M      P V
Sbjct: 252 QEKGVYPDIVTYNTLISAYS----------------SQGLMEEAFELMHAMPSKGFSPGV 295

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           + Y  +I  L      +    V+ EM +  +  D   Y +L+M  CK G  V    +F +
Sbjct: 296 YTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSD 355

Query: 264 M-----------------------------------KENGILIDRAIYGVLIEGLVGEGK 288
           M                                   KE G++ D  IY +LI+G   +G 
Sbjct: 356 MRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGM 415

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           + +A +L  +++  G   D+  YN+I+ GLC+ K   +A KLF    +  L PD  T+  
Sbjct: 416 ISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTI 475

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKG 406
           L+    ++G + N  +L  +M++ +  +  D+  +   L   GK   I  A +++ ++  
Sbjct: 476 LIDGHCKLGNLQNAMELFKKMKEKR--IKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVS 533

Query: 407 KGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
           K     PI ++IL+ AL   G + +A  ++ +M   +++   +  +  I+ +  SG+  +
Sbjct: 534 KEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASD 593

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYAL 523
                 K+I    VP   +YN L  G  K   +  A  LV+  +     G  P  F Y  
Sbjct: 594 GEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKK-MEEKQGGLVPDVFTYN- 651

Query: 524 TILH-VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           +ILH  CR  + ++   VL +M + G  P+    +++I+G      L EA +    + +R
Sbjct: 652 SILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQR 711



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 91/204 (44%), Gaps = 5/204 (2%)

Query: 177 LMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L+D  G++ ++    EI   M      P   +++ ++  L ++ +L    RVW+EM    
Sbjct: 511 LLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKS 570

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           ++  VM   ++I G C+ G    G     +M   G + D   Y  LI G V E  + KA 
Sbjct: 571 IKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAF 630

Query: 294 DLLKDLVD--SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
            L+K + +   G   D+  YNSI+ G CR  Q  +A  +    ++  + PD ST   L+ 
Sbjct: 631 GLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLIN 690

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFS 375
                  +   F+   +M +  FS
Sbjct: 691 GFVSQDNLTEAFRFHDEMLQRGFS 714



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 2/165 (1%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S+G ++E   + ++M     KP V    +MI+      N        E+M  +    D +
Sbjct: 552 SKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCI 611

Query: 240 AYVTLIMGLCKGGRVVRGHELFREM--KENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           +Y TLI G  K   + +   L ++M  K+ G++ D   Y  ++ G   E ++ +A  +L+
Sbjct: 612 SYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLR 671

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
            +++ G   D   Y S+I G        +A++  +  +Q   +PD
Sbjct: 672 KMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPD 716


>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
 gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
          Length = 877

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/443 (22%), Positives = 191/443 (43%), Gaps = 47/443 (10%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G +    +  E MR     P    YT++I   A  R+++  L    +MK++ VE  ++ 
Sbjct: 315 RGDMHRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGVEMSLVT 374

Query: 241 YVTLIMGLCKGGR------VVRGHELFREMKENGILIDRAIYGVLIEG--LVGE------ 286
           Y  ++ G  K G       + R   L REM+E GI     IY  ++ G  ++G       
Sbjct: 375 YSIVVGGFAKIGNADQSCNMDRAESLVREMEEEGIDAPIDIYHTMMNGYTMIGNEEKCLI 434

Query: 287 ---------------------------GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
                                      GKV KA ++ K +  +G + ++  Y+ +I G  
Sbjct: 435 VFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLINGFL 494

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           ++K +  A+ +FE  ++D L PD    N ++     MG MD    ++ +M+K +    + 
Sbjct: 495 KLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTS- 553

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFG 436
              F   + G  +   +  AL++F+ ++  G   +V  +N L+  L+E  +++KA+ +  
Sbjct: 554 -RTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILD 612

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M    +  +  +++  +  +   GD  +A E   K+        V  Y  L K  CK G
Sbjct: 613 EMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG 672

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            + +A+ + R+         T F Y + I    R G+  +  +++ +M QEG  P+    
Sbjct: 673 RMQSALAVTREMSAQNIPRNT-FVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTY 731

Query: 557 SAIISGMCKHGTLEEARKVFTNL 579
           ++ I+  CK G +  A K    +
Sbjct: 732 TSFINACCKAGDMLRATKTIQEM 754



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/414 (20%), Positives = 177/414 (42%), Gaps = 15/414 (3%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           KP    +  M+   A   ++    + +E M+   +      Y +LI     G  +     
Sbjct: 299 KPARREFGLMVGYYARRGDMHRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALS 358

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD------LLKDLVDSGYRADLGIYNS 313
             R+MKE G+ +    Y +++ G    G   ++C+      L++++ + G  A + IY++
Sbjct: 359 CVRKMKEEGVEMSLVTYSIVVGGFAKIGNADQSCNMDRAESLVREMEEEGIDAPIDIYHT 418

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           ++ G   +   +K   +F+   +   AP   +   L+    +MG++    ++   ME   
Sbjct: 419 MMNGYTMIGNEEKCLIVFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESA- 477

Query: 374 FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKK 430
             +  +++ +   + G  K +    A  VFE++   G    V +YN ++ A   +G + +
Sbjct: 478 -GIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDR 536

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A+++  +M+       S +F   I     +G++  A E  + +     +P+V  +N L  
Sbjct: 537 AIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVL 596

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           GL +  +++ A+ ++ D +      P E  Y   +      G+  K  E   ++  EG  
Sbjct: 597 GLVEKRQMEKAVEIL-DEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLE 655

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
            +     A++   CK G ++ A  V   +  + +    NT VY+ ILI+   ++
Sbjct: 656 LDVFTYEALLKACCKSGRMQSALAVTREMSAQNI--PRNTFVYN-ILIDGWARR 706



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 141/347 (40%), Gaps = 17/347 (4%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G KHN  +Y+ L      N   +  D                 + E + ++  KPDV  Y
Sbjct: 478 GIKHNMKTYSMLI-----NGFLKLKDWT-----------NAFTVFEDVIKDGLKPDVVLY 521

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +I+      N+D  + + +EM+K         ++ +I G  + G + R  E+F  M+ 
Sbjct: 522 NNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRR 581

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           +G +     +  L+ GLV + ++ KA ++L ++  +G   D   Y +I+ G   +    K
Sbjct: 582 SGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGK 641

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A++ F     + L  D  T   LL  C + GRM +   +  +M          +      
Sbjct: 642 AFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILID 701

Query: 387 LVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
              +   +  A D+ +++K +G    +  Y   + A  + G++ +A     +M  L ++ 
Sbjct: 702 GWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKP 761

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
           N  +++  I     +    +A  C  ++      P  A Y+CL   L
Sbjct: 762 NVKTYTTLIHGWACASLPEKALRCFEEMKLAGLKPDKAVYHCLMTSL 808



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 149/352 (42%), Gaps = 33/352 (9%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQ---------------GRIAEM 187
           + G K +   YN +  A+C    N+ RA   V E+   +                R  EM
Sbjct: 511 KDGLKPDVVLYNNIIKAFC-GMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEM 569

Query: 188 ---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
              LEI + MRR+ C P V  + A++  L  +R ++  + + +EM    V  D   Y T+
Sbjct: 570 RRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTI 629

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + G    G   +  E F +++  G+ +D   Y  L++     G++  A  + +++     
Sbjct: 630 MNGYAALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNI 689

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             +  +YN +I G  R     +A  L +   Q+ + PD  T    +  C + G M    K
Sbjct: 690 PRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATK 749

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIM--MALDVFEELKGKGYS-SVPIYNILMGA 421
            + +ME L   V  +++ +   + G     +   AL  FEE+K  G      +Y+ LM +
Sbjct: 750 TIQEMEAL--GVKPNVKTYTTLIHGWACASLPEKALRCFEEMKLAGLKPDKAVYHCLMTS 807

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           LL    V +A Y++  +  +  E+      I  +  V+ G  +   +C  KI
Sbjct: 808 LLSRATVAEA-YIYSGILSICREM------IESELTVDMGTAVYWSKCLRKI 852


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 213/491 (43%), Gaps = 26/491 (5%)

Query: 120 DLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD 179
           ++++ ++K++  PT  S   H     KG   +  + N L  C                  
Sbjct: 74  NILSSLVKMQRFPTAISLSKHL--DFKGITSDLVTLNILINCFCH--------------- 116

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
             G+I     +L  + +    PDV   T +I+ L     +   L+  +++     + D +
Sbjct: 117 -LGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRI 175

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y TLI GLCK G      +L R ++E  I  D  +Y ++I+ L     VG+AC+L  ++
Sbjct: 176 SYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEM 235

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
                  ++  Y ++I G C +    +A  L       ++ PD  T + L+    + G+M
Sbjct: 236 NAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKM 295

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYN 416
                +LA M  +K  V  D+  +   + G      +  A  VF  +   G +  V  Y 
Sbjct: 296 KAAKIVLAVM--MKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYT 353

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           I++  L +   V +A+ LF +M+  N+  N+++F+  I    +SG I    +  +K+ + 
Sbjct: 354 IMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDR 413

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
           SQ+  V  Y+ L   LCK   +D A+ L +  +      P  + Y + I  +C+ G  + 
Sbjct: 414 SQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQ-PDMYTYTILIDGLCKGGRLKI 472

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
             EV   +  +G   +    + +ISG CK G  +EA  + + + +   +   N I +D I
Sbjct: 473 AQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCI--PNAITFDII 530

Query: 597 LIEHMKKKTAD 607
           +    +K   D
Sbjct: 531 ICALFEKDEND 541



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 168/406 (41%), Gaps = 39/406 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G     ++++  +     KPDV  Y  +I  L   + +     ++ EM    +  +V+ Y
Sbjct: 188 GETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTY 247

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G C  G ++    L  EMK   I  D   + +LI+ L  EGK+  A  +L  ++ 
Sbjct: 248 TTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMK 307

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +  + D+  YNS++ G   V +   A  +F    Q  + P   +                
Sbjct: 308 AYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQS---------------- 351

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
                       +++  D        + K + +  A+ +FEE+K K      I +N L+ 
Sbjct: 352 ------------YTIMID-------GLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLID 392

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L + G +     L  KMR  +   + +++S  I    ++  + +A     K+I     P
Sbjct: 393 GLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQP 452

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK-YALTILHVCRSGEAEKIIE 539
            +  Y  L  GLCK G +  A  + +  L  +     + + Y + I   C++G  ++ + 
Sbjct: 453 DMYTYTILIDGLCKGGRLKIAQEVFQHLL--IKGYHLDIRTYTVMISGFCKAGLFDEALA 510

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
           +L++M   GC PN +    II  + +    ++A K+   +  R LL
Sbjct: 511 LLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKLLREMIARGLL 556



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 103/473 (21%), Positives = 191/473 (40%), Gaps = 65/473 (13%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P  F +  ++  L   +     + + + +    + +D++    LI   C  G++     +
Sbjct: 67  PPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSV 126

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              + + G   D      LI+GL   G+V KA     D+V   ++ D   Y ++I GLC+
Sbjct: 127 LATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCK 186

Query: 321 VKQFDKAYKLF----EVTVQDDLA-------------------------------PDFST 345
           + +   A +L     E +++ D+                                P+  T
Sbjct: 187 IGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVT 246

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEE 403
              L+     MG +     LL +M KLK ++  D+  F   +  +GKE + M A  +   
Sbjct: 247 YTTLIYGFCIMGCLIEAVALLNEM-KLK-NINPDVYTFSILIDALGKEGK-MKAAKIVLA 303

Query: 404 LKGKGYS--SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           +  K Y    V  YN L+     + EVK A Y+F  M    +     S++I I    ++ 
Sbjct: 304 VMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTK 363

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
            + EA     ++   + +P+   +N L  GLCK G I     LV D + + +       Y
Sbjct: 364 MVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLV-DKMRDRSQLADVITY 422

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           +  I  +C++   ++ I +  +M  +   P+    + +I G+CK G L+ A++VF +L  
Sbjct: 423 SSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLI 482

Query: 582 RKLLTEANTIVYDEILIEHMKKKTADLVLSGL-------KFFGLESKLKAKGC 627
           +                 H+  +T  +++SG        +   L SK++  GC
Sbjct: 483 KGY---------------HLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGC 520


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/461 (24%), Positives = 197/461 (42%), Gaps = 52/461 (11%)

Query: 181 QGRIAEMLEILEKM---RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           + R  E LE+L  M   R     PDV +YT +I     E + D     + EM    +  D
Sbjct: 171 ENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPD 230

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ Y ++I  LCKG  + +  E+   M +NG++ +   Y  ++ G     +  +A   LK
Sbjct: 231 VVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLK 290

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            +   G   D+  YNS++  LC+  +  +A K+F+   +  L PD +T   LL   A  G
Sbjct: 291 KMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKG 350

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLV---GKEERIMMALDVFEELKGKGYS-SVP 413
            +     LL  M  ++  +  D    F  L+    K+E++  A+ VF +++  G + +V 
Sbjct: 351 ALVEMHALLDLM--VRNGIHPD-HHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVV 407

Query: 414 IYNILMGALLEIGEVKKALYLFGKM----------------------------------- 438
            Y  ++G L + G V  A+  F +M                                   
Sbjct: 408 TYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEM 467

Query: 439 --RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
             RG+ L  N++ F+  I  H + G ++E+ +  + ++ +   P+V  Y+ L  G C  G
Sbjct: 468 LDRGICL--NTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAG 525

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           ++D A  L+   + +V   P    Y   I   CR    +  + +  EM   G  PN +  
Sbjct: 526 KMDEATKLLSS-MFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 584

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           + I+ G+        A++++  + +     E +T  Y+ IL
Sbjct: 585 NIILQGLFHTRRTAAAKELYVGITKSGTQLELST--YNIIL 623



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 184/409 (44%), Gaps = 20/409 (4%)

Query: 183 RIAEMLEI-LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL---VEADV 238
           R ++ ++I L +M    C PDVF+ T +++ L  E      L +   M  D       DV
Sbjct: 137 RTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDV 196

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           ++Y T+I G  K G   + +  + EM +  I  D   Y  +I  L     + KA ++L  
Sbjct: 197 VSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTT 256

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +V +G   +   YNSI+ G C  +Q  +A    +    D + PD  T N L+    + GR
Sbjct: 257 MVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 316

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA-----LDVFEELKGKGYSSVP 413
                K+   M K    +  D+  +   L G   +  +      LD+   ++   +    
Sbjct: 317 STEARKIFDSMTKR--GLEPDIATYCTLLQGYATKGALVEMHALLDLM--VRNGIHPDHH 372

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           ++NIL+ A  +  +V +A+ +F KMR   L  N +++   I    +SG + +A     ++
Sbjct: 373 VFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQM 432

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG- 532
           I+    P++  Y  L   LC   + D A  L+ + L       T F  ++   H C+ G 
Sbjct: 433 IDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSH-CKEGR 491

Query: 533 --EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             E+EK+ ++   M + G  PN +  S +I G C  G ++EA K+ +++
Sbjct: 492 VIESEKLFDL---MVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSM 537



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 187/421 (44%), Gaps = 20/421 (4%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + EM  +L+ M RN   PD   +  +I   A +  +D  + V+ +M++  +  +V+
Sbjct: 348 TKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVV 407

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I  LCK G V      F +M + G+  +  +Y  LI  L    K  KA +L+ ++
Sbjct: 408 TYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEM 467

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +D G   +   +NSII   C+  +  ++ KLF++ V+  + P+  T + L+      G+M
Sbjct: 468 LDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKM 527

Query: 360 DNFFKLLAQMEKLKFSVAA--DLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPI 414
           D   KLL+ M    FSV    D   +   + G  +  R+  AL +F+E+   G S ++  
Sbjct: 528 DEATKLLSSM----FSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT 583

Query: 415 YNILMGALLEIGEVKKA--LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
           YNI++  L        A  LY+     G  LE+++ +  +   C     D  EA      
Sbjct: 584 YNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTD--EALRMFQN 641

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVC 529
           +           +N +   L K+G  D A    +D     +S    P  + Y L   ++ 
Sbjct: 642 LCLTDLQLETRTFNIMIGALLKVGRNDEA----KDLFVAFSSNGLVPNYWTYRLMAENII 697

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
             G  E++ ++   M   GC  +  + + I+  + + G +  A    + + E+    EA+
Sbjct: 698 GQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEAS 757

Query: 590 T 590
           T
Sbjct: 758 T 758



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 93/434 (21%), Positives = 169/434 (38%), Gaps = 50/434 (11%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           V   V  Y  LI   C+ GR+  G      + + G  ++   +  L++GL  + +   A 
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 294 D--------------------LLKDLVD-------------------SGYRADLGIYNSI 314
           D                    LLK L D                    G   D+  Y ++
Sbjct: 143 DIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTV 202

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
           I G  +    DKAY  +   +   ++PD  T + ++    +   MD   ++L  M  +K 
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTM--VKN 260

Query: 375 SVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKA 431
            V  +   +   L G    E+   A+   ++++  G    V  YN LM  L + G   +A
Sbjct: 261 GVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEA 320

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
             +F  M    LE +  ++   +Q +   G ++E     + ++     P    +N L   
Sbjct: 321 RKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICA 380

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
             K  ++D A MLV   +      P    Y   I  +C+SG  +  +    +M  EG  P
Sbjct: 381 YAKQEKVDEA-MLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTP 439

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLS 611
           N ++ +++I  +C     ++A ++   + +R +    NTI ++ I+  H K+     V+ 
Sbjct: 440 NIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICL--NTIFFNSIIHSHCKEGR---VIE 494

Query: 612 GLKFFGLESKLKAK 625
             K F L  ++  K
Sbjct: 495 SEKLFDLMVRIGVK 508



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 9/197 (4%)

Query: 406 GKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
           GK   +V  Y IL+G     G +       G +      V +++F+  ++         +
Sbjct: 81  GKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSD 140

Query: 466 ACE-CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM----MLVRDCLGNVASGPTEFK 520
           A +    ++ E+S +P V +   L KGLC       A+    M+  D  G   S P    
Sbjct: 141 AMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGG--GSAPDVVS 198

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           Y   I    + G+++K     +EM      P+ V  S+II+ +CK   +++A +V T + 
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMV 258

Query: 581 ERKLLTEANTIVYDEIL 597
           +  ++   N + Y+ IL
Sbjct: 259 KNGVM--PNCMTYNSIL 273


>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 663

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 194/451 (43%), Gaps = 13/451 (2%)

Query: 157 ALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE 216
           A  +CL+    F  +  +  L  S  RI  + E+L  M +  C PD++A    I  L  +
Sbjct: 221 AKGFCLTP---FTYSRWISALCQSN-RIELVQELLVDMDKLGCSPDIWACNIYIYYLCKQ 276

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
             L   L++ E+M+      DV+ Y T++ GLC   +      L+ EM +  +  D    
Sbjct: 277 NRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVFSC 336

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
           G LI GL    KV +A +L   ++       + IYN++I G  R    DKAYK+      
Sbjct: 337 GALIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRT 396

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERI 394
           +   PD  T N LL     +G M+   KL+ +ME     V  D   + + L G  K  ++
Sbjct: 397 NGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETS--GVNPDRYSYNQLLKGLCKTHQL 454

Query: 395 MMALD-VFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
             A   V + ++  G+      NIL+ A  +  +VK AL LF +M    ++ +++++   
Sbjct: 455 DKAFAFVSDHMEVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGTL 514

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
           I      G    A E   +++     P+V  YN +   LCK+G    A  +    +    
Sbjct: 515 INGLFSVGYYNLAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKEV 574

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
           S P    +   I  + +   A + + +  +M   G  P+ +    +ISG+   G    A 
Sbjct: 575 S-PDTVTFNTLIYWLGKRSRAIEALNLFKDMRTRGVEPDTLTFKYLISGLLDEGKSTLAY 633

Query: 574 KVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           +V+  + E  ++ +       E LI  +K K
Sbjct: 634 EVWEYMMENGIILDREV---SERLISVLKSK 661



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 119/520 (22%), Positives = 214/520 (41%), Gaps = 66/520 (12%)

Query: 108 VTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLS--- 163
           + EL +L   + P +V  V++  ++   A +F+ WA  + G+ H   S  A+AY +S   
Sbjct: 78  LVELERLDVELDPIVVNLVVRGLSDSETAVRFYWWAESRPGFDH---SQFAIAYLVSLLF 134

Query: 164 --------RNNLFRAADQVPELMDS-----------QGRIAEMLEILEKMRRNLCKPDVF 204
                      L R   Q   L  S            G+   ++E  ++M  + C+    
Sbjct: 135 MDGNFALLSEFLGRVKSQGVALHRSLYRILLSGYVRAGKFDSVIETFDEMVMSGCREFGV 194

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y   I VL      D   + ++             Y   I  LC+  R+    EL  +M
Sbjct: 195 DYNRYIGVLVKNCCFDLVEKYYDMALAKGFCLTPFTYSRWISALCQSNRIELVQELLVDM 254

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            + G   D     + I  L  + ++  A  +++ +   G   D+  Y +++ GLC  K+F
Sbjct: 255 DKLGCSPDIWACNIYIYYLCKQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKF 314

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +A  L+E  V+ DL PD  +   L+    +  ++D  F+L ++                
Sbjct: 315 AEAIGLWEEMVKRDLKPDVFSCGALIFGLCKNNKVDEAFELASR---------------- 358

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                     M+ LD+  EL      SV IYN L+      G + KA  +   MR    E
Sbjct: 359 ----------MLTLDI--EL------SVCIYNALISGFWRAGSIDKAYKIISFMRTNGCE 400

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PSVAAYNCLTKGLCKIGEIDAAMM 503
            + ++++I +  +   G ++E  E   + +E S V P   +YN L KGLCK  ++D A  
Sbjct: 401 PDIVTYNILLNHYCTIG-MMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFA 459

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
            V D +  V          + I   C++ + +  +E+  EM  +G   + V    +I+G+
Sbjct: 460 FVSDHM-EVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGTLINGL 518

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
              G    A ++F  +   ++  + N  +Y+ I++ H+ K
Sbjct: 519 FSVGYYNLAEELFEQMLNAQI--DPNVNLYN-IMLHHLCK 555



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 47/107 (43%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G       I   M +    PD   +  +I  L         L ++++M+   VE D + +
Sbjct: 557 GHFKRAQTIFSHMIQKEVSPDTVTFNTLIYWLGKRSRAIEALNLFKDMRTRGVEPDTLTF 616

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
             LI GL   G+    +E++  M ENGI++DR +   LI  L  + K
Sbjct: 617 KYLISGLLDEGKSTLAYEVWEYMMENGIILDREVSERLISVLKSKNK 663


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/472 (23%), Positives = 194/472 (41%), Gaps = 66/472 (13%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCK- 200
           +QKG   +  +YN L  AYC  R  L   A +V   M  +G +   L     +   LCK 
Sbjct: 212 EQKGIFADIVTYNTLINAYC--REGLLGEAFEVMNSMSGKG-LKPTLFTYNAVINGLCKK 268

Query: 201 -------------------PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
                              PD   Y  ++       N      ++ +M    V  D++++
Sbjct: 269 GRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISF 328

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI    + G + +    FR+MK +G++ D  IY +LI G    G + +A ++   +++
Sbjct: 329 SSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLE 388

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  YN+I+ GLC+ K    A  LF+  V+  + PDF T   L+    + G M  
Sbjct: 389 QGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGK 448

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
              L   M +                                        +  YNIL+  
Sbjct: 449 ALSLFGIMTQKNIK----------------------------------PDIVTYNILIDG 474

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
             +  E++KA  L+ +M    +  N +S++I +  +   G + EA    +++I     P+
Sbjct: 475 FCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPT 534

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS---GPTEFKYALTILHVCRSGEAEKII 538
           +   N + KG C+ G++  A     + LG + S   GP    Y   I    +    +K  
Sbjct: 535 LVTCNTVIKGYCRSGDLSKA----DEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAF 590

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            ++N+M  +G  P+ V  + I++G C+ G ++EA  +   + ER +  + +T
Sbjct: 591 FLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRST 642



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 120/491 (24%), Positives = 214/491 (43%), Gaps = 67/491 (13%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ E  +  + +RR      + A  +++  L     +D    V+ E+ +  +E +V    
Sbjct: 130 KLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLN 189

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++  LCK  ++        +M++ GI  D   Y  LI     EG +G+A +++  +   
Sbjct: 190 IMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGK 249

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G +  L  YN++I GLC+  ++ +A  +F   +   L+PD +T N LLV   E  R +NF
Sbjct: 250 GLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLV---ESCRNNNF 306

Query: 363 FK---LLAQMEKLKFSVAADLEKFFEFLVGKEER---IMMALDVFEELKGKGYSSVP--- 413
            +   + + M  L   V+ DL   F  L+G   R   +  AL  F ++K  G   VP   
Sbjct: 307 LEAKDIFSDM--LHRGVSPDLIS-FSSLIGVSSRNGHLDQALMYFRDMKTSGL--VPDNV 361

Query: 414 IYNILMGALLEIGEVKKALYLFGKM--RGLNLEV-------------------NSL---- 448
           IY IL+      G + +AL +  KM  +G  L+V                   N+L    
Sbjct: 362 IYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEM 421

Query: 449 ----------SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
                     +F+  I  H + G++ +A      + + +  P +  YN L  G CK  E+
Sbjct: 422 VERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEM 481

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           + A  L  + +      P    YA+ +   C  G   +   + +EM ++G  P  V C+ 
Sbjct: 482 EKANELWNEMISRKIF-PNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNT 540

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIVYDEILIEHMKKKTADLVLSGLKF 615
           +I G C+ G L +A +        K+++E    ++I Y+ ++   +K +  D      K 
Sbjct: 541 VIKGYCRSGDLSKADEFLG-----KMISEGVGPDSITYNTLINGFVKGEYMD------KA 589

Query: 616 FGLESKLKAKG 626
           F L +K++ KG
Sbjct: 590 FFLINKMETKG 600



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 188/424 (44%), Gaps = 20/424 (4%)

Query: 177 LMDSQGRIAEML--------EILEKM--RRNLCKPDVFAYTAMIRVLAAERNLDACLRVW 226
           L D+Q  I  M+        EI+E +    + C  D   +  +IR     R L+     +
Sbjct: 79  LSDAQTLILRMIRRSGVSRVEIVESLISMSSTCGVDNLVFDLLIRSYVQARKLNEGTDTF 138

Query: 227 EEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
           + +++      + A  +L+ GL K G V    E++ E+  +GI ++     +++  L  +
Sbjct: 139 KILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKD 198

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
            K+      L D+   G  AD+  YN++I   CR     +A+++        L P   T 
Sbjct: 199 HKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTY 258

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL 404
           N ++    + GR      +  +M  L   ++ D   +   LV   +    + A D+F ++
Sbjct: 259 NAVINGLCKKGRYVRAKGVFNEM--LSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDM 316

Query: 405 KGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
             +G S   I ++ L+G     G + +AL  F  M+   L  +++ ++I I  +  +G +
Sbjct: 317 LHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMM 376

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT-EFKYA 522
            EA E  +K++E      V AYN +  GLCK   +  A  L  +    V  G   +F   
Sbjct: 377 SEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEM---VERGVVPDFCTF 433

Query: 523 LTILH-VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            T++H  C+ G   K + +   MTQ+   P+ V  + +I G CK   +E+A +++  +  
Sbjct: 434 TTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMIS 493

Query: 582 RKLL 585
           RK+ 
Sbjct: 494 RKIF 497



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 157/378 (41%), Gaps = 46/378 (12%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQV----------PELMD---------SQGRIAEM 187
           G   +  +YN L     RNN F  A  +          P+L+            G + + 
Sbjct: 285 GLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQA 344

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L     M+ +   PD   YT +I        +   L + ++M +     DV+AY T++ G
Sbjct: 345 LMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNG 404

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK   +   + LF EM E G++ D   +  LI G   EG +GKA  L   +     + D
Sbjct: 405 LCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPD 464

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  YN +I G C+  + +KA +L+   +   + P+  +   L+     +G +   F+L  
Sbjct: 465 IVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWD 524

Query: 368 QMEK--------------LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
           +M +                +  + DL K  EFL GK    M++       +G G  S+ 
Sbjct: 525 EMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFL-GK----MIS-------EGVGPDSIT 572

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN L+   ++   + KA +L  KM    L+ + +++++ +      G + EA     K+
Sbjct: 573 -YNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKM 631

Query: 474 IEMSQVPSVAAYNCLTKG 491
           IE    P  + Y  L  G
Sbjct: 632 IERGIDPDRSTYTTLING 649



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 72/161 (44%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G ++E   + ++M R   KP +     +I+      +L        +M  + V  D + Y
Sbjct: 514 GFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITY 573

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G  KG  + +   L  +M+  G+  D   Y V++ G   +G++ +A  +L+ +++
Sbjct: 574 NTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIE 633

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
            G   D   Y ++I G        +A++  +  +Q    PD
Sbjct: 634 RGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPD 674


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/437 (22%), Positives = 194/437 (44%), Gaps = 25/437 (5%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           GY  +  +YNA+   LS  +L  A                     + M  +   P+V+ Y
Sbjct: 118 GYAPSVLAYNAVLLALSDASLPSAR-----------------RFFDSMLSDGVAPNVYTY 160

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             ++R L    +    L V  +M+    + + + Y TL+   C+ G V R   L   M+E
Sbjct: 161 NILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMRE 220

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G+  +   +  ++ G+   G++  A  +  ++V  G   D   YN+++GG C+V    +
Sbjct: 221 GGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHE 280

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A  +F    +  + PD  T   L+    + G ++    L+ +M +    +    E  F  
Sbjct: 281 ALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMN---EITFTA 337

Query: 387 LVG---KEERIMMALDVFEELKG-KGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
           L+    K+  +  AL    E++  +   SV  YN L+     +G + +A  L  +M    
Sbjct: 338 LIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKG 397

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           ++ + +++S  +  + ++GD   A + + +++E   +P    Y+ L + LC+   +  A 
Sbjct: 398 VKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAH 457

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
           +L ++ + ++   P E  Y   I   C+ G  E+ + + +EM + G  P+ V  S +I+G
Sbjct: 458 VLFKNMI-SLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLING 516

Query: 563 MCKHGTLEEARKVFTNL 579
           + K    +EA+++   L
Sbjct: 517 LSKSARTKEAQRLLFKL 533



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 171/375 (45%), Gaps = 26/375 (6%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + + L  + +MR+   +P V  Y A+I        +D    +  EM+   V+ DV+ 
Sbjct: 345 KGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVT 404

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T++   CK G      +L ++M ENG+L D   Y  LI  L  E ++G A  L K+++
Sbjct: 405 YSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMI 464

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + D   Y S+I G C+    ++A  L +  V+  + PD  T + L+   ++  R  
Sbjct: 465 SLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTK 524

Query: 361 NFFKLLAQM---EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNI 417
              +LL ++   E +  ++  D               +M      ELK        +  +
Sbjct: 525 EAQRLLFKLYHEEPVPANIKYD--------------ALMRCCRNAELKS-------VLAL 563

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L G  ++ G + +A  ++  +   N  ++   +S+ I  H   G++++A   H ++++  
Sbjct: 564 LKGFCMK-GLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCG 622

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P+  +   L +GL + G +  A  +++  L   +    E   AL  L++ + G  + +
Sbjct: 623 FAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNL-KEGNVDAV 681

Query: 538 IEVLNEMTQEGCPPN 552
           ++VL+ M ++G  P+
Sbjct: 682 LDVLHGMARDGLLPS 696



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 102/432 (23%), Positives = 189/432 (43%), Gaps = 30/432 (6%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E L +  +M R    PDV  +T++I V+    NL+  + +  EM++  ++ + + +  LI
Sbjct: 280 EALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALI 339

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G CK G +       REM++  I      Y  LI G    G++ +A +L++++   G +
Sbjct: 340 DGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVK 399

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  Y++I+   C+      A++L +  +++ + PD  T + L+    E  R+ +   L
Sbjct: 400 PDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVL 459

Query: 366 LAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGAL 422
              M  +   +  D   +   + G  KE  +  AL + +E+   G    V  Y++L+  L
Sbjct: 460 FKNM--ISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGL 517

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            +    K+A  L  K+        ++ +   ++C            C N     +++ SV
Sbjct: 518 SKSARTKEAQRLLFKLYHEEPVPANIKYDALMRC------------CRN-----AELKSV 560

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
            A   L KG C  G ++ A  + +  L    +      Y++ I   CR G   K +    
Sbjct: 561 LA---LLKGFCMKGLMNEADKVYQSILDRNWNLDGSV-YSVLIHGHCREGNVMKALSFHK 616

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE-HM 601
           +M Q G  PN     ++I G+ + G + EA +V   L     L +A      + LI+ ++
Sbjct: 617 QMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEA---SKALIDLNL 673

Query: 602 KKKTADLVLSGL 613
           K+   D VL  L
Sbjct: 674 KEGNVDAVLDVL 685



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 116/322 (36%), Gaps = 70/322 (21%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           + KG K +  +Y+ +  AYC                    G      ++ ++M  N   P
Sbjct: 394 EAKGVKPDVVTYSTILSAYC------------------KNGDTHSAFQLNQQMLENGVLP 435

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           D   Y+++IRVL  E+ L     +++ M    ++ D + Y +LI G CK G V R   L 
Sbjct: 436 DAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLH 495

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL------------------------- 296
            EM + G+L D   Y VLI GL    +  +A  LL                         
Sbjct: 496 DEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNA 555

Query: 297 -------------------------KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
                                    + ++D  +  D  +Y+ +I G CR     KA    
Sbjct: 556 ELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFH 615

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE 391
           +  +Q   AP+ ++   L+    E G +    +++ Q+        A+  K    L  KE
Sbjct: 616 KQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKE 675

Query: 392 ERIMMALDVFEELKGKGYSSVP 413
             +   LDV   +   G    P
Sbjct: 676 GNVDAVLDVLHGMARDGLLPSP 697


>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
 gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/481 (22%), Positives = 206/481 (42%), Gaps = 25/481 (5%)

Query: 114 LRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA-- 171
           LR + P LV  VL  +++  +A  FF W+ +Q  Y+H+   Y  +   LS+  L + A  
Sbjct: 45  LRGLKPRLVCAVLLSQSDERVALDFFFWSDRQWRYRHDPIVYCVMLDVLSKTKLCQGARR 104

Query: 172 ----------DQVPE----LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
                      + P+    +M S    G++   +++L  M++   +P++      I VL 
Sbjct: 105 VLRLMVRRGIQRTPQDFCCVMVSYSRAGKLRNAMQVLTMMQKAGIEPNLLVCNTAIHVLV 164

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
               L+  LR  E M+   +  +V+ Y  LI G C   RV    EL  EM   G   D+ 
Sbjct: 165 MANMLEKALRFLERMQLLGIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKV 224

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
            Y  ++  L    ++ +  D+++ + D+   AD   YN++I  LC+ +  D+A +     
Sbjct: 225 SYYTVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREA 284

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE-- 392
            +     D    + ++    + GRMD   +++ +M         D+  +   + G  +  
Sbjct: 285 QKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEM--FTRGCIPDVVTYTAIINGFSQAG 342

Query: 393 RIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
            +  A  + +++   G     + Y   +  L + G   +A  +           N++++S
Sbjct: 343 EVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYS 402

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
           + +      G + +AC+   ++I     P+    N L + LC+IG +D A   + +CL N
Sbjct: 403 VVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECL-N 461

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
           +        +   I   C+  + E  + +L++M      P+ V  + II  + K G +EE
Sbjct: 462 MGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEE 521

Query: 572 A 572
           A
Sbjct: 522 A 522



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 179/410 (43%), Gaps = 6/410 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ + +E++ +M    C PD  +Y  ++  L   R +   + V E+M+   + AD + Y 
Sbjct: 203 RVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYN 262

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TLI  LCK        +  RE ++ G  +D+  Y  +++    EG++ +A +++ ++   
Sbjct: 263 TLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTR 322

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D+  Y +II G  +  +  +A K+ +   +    P+  +    L    + G     
Sbjct: 323 GCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEA 382

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGA 421
            +++   E+  ++  A           +E ++  A DV  E+ GKG+   P+  N+L+ +
Sbjct: 383 REMMKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQS 442

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L  IG V +A     +   +   VN+++F+  I    +  DI  A    + +   ++ P 
Sbjct: 443 LCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMYLSNKHPD 502

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
              Y  +   L K G I+ A  L    L      PT   Y   I    + G  E ++ +L
Sbjct: 503 AVTYTTIIDALGKKGRIEEATELTLKMLKK-GIDPTPVTYRTVIHRYGQIGRVEDLLNLL 561

Query: 542 NEM-TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           ++M T++ C       + +I  +C  G LE A K+   +       +ANT
Sbjct: 562 DKMLTRQEC---RTAFNQVIEKLCTFGNLEAADKLLGKVLRTASRIDANT 608



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/469 (20%), Positives = 191/469 (40%), Gaps = 58/469 (12%)

Query: 116 RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQ 173
           +VT + +  +L    +   A +F   A K +G++ +   Y+A+  +YC            
Sbjct: 258 QVTYNTLIHMLCKHQHADEALQFLREAQK-RGFQVDKVGYSAIVDSYC------------ 304

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
                  +GR+ +  EI+ +M    C PDV  YTA+I   +    +    ++ ++M K  
Sbjct: 305 ------KEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHG 358

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
            + + ++Y   + GLC+ G      E+ +  +E     +   Y V++ G   EGK+  AC
Sbjct: 359 CKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDAC 418

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           D++++++  G+       N ++  LCR+ + D+A K  E                    C
Sbjct: 419 DVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEE-------------------C 459

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
             MG   N       +   +F    D+E     L           D++  L  K   +V 
Sbjct: 460 LNMGCAVNAVNFTTVIH--RFCQQDDIEAALSLLD----------DMY--LSNKHPDAVT 505

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            Y  ++ AL + G +++A  L  KM    ++   +++   I  + + G + +     +K+
Sbjct: 506 -YTTIIDALGKKGRIEEATELTLKMLKKGIDPTPVTYRTVIHRYGQIGRVEDLLNLLDKM 564

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           +   +  +  A+N + + LC  G ++AA  L+   L   +       + L   ++ R G 
Sbjct: 565 LTRQECRT--AFNQVIEKLCTFGNLEAADKLLGKVLRTASRIDANTCHVLMESYL-RKGI 621

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
                +V   M      P+  +C  +   + + G  EEA  +F    ER
Sbjct: 622 PLSAYKVACRMFSRSLIPDLKLCEKVCKKLMQEGKSEEADNLFLRFVER 670


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 113/470 (24%), Positives = 197/470 (41%), Gaps = 33/470 (7%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           R + P +  EV+K  ++P L  KFF ++       H F +Y+ L   L +  L  +A  V
Sbjct: 72  RNLNPSIAFEVIKRFSDPLLGLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIV 131

Query: 175 PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
            + M S G +                PD      ++   A    LD+      E+    +
Sbjct: 132 FDCMRSDGIL----------------PDSSILELLVSSYARMGKLDSAKNFLNEVHCYGI 175

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           +     Y  L+  L K   V     LFRE  E   + D   + +LI GL   G++ KA +
Sbjct: 176 KVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFE 235

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCC 353
             +++ + G   D+  YN++I G CRV +  K + L  E  +   ++PD  T   ++   
Sbjct: 236 FFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGY 295

Query: 354 AEMGRMDNFFKLLAQM-------EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKG 406
            ++G M    +L  +M           F+V  D         GK   +  A+ ++E++  
Sbjct: 296 CKLGDMKAASELFDEMVSSGIKPNDFTFNVLID-------GFGKVGNMRSAMVMYEKMLL 348

Query: 407 KG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G    V  +  L+      GEV + L L+ +M+  NL  N  ++++ I    +   I E
Sbjct: 349 LGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIRE 408

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A      +     VP    YN +  G CK G++D A  +V + +      P +  + + I
Sbjct: 409 ARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAE-MQEKKCRPDKITFTILI 467

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           +  C  G   + I    +M +  C P+E+  +++IS + K G   EA ++
Sbjct: 468 IGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQI 517



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 158/349 (45%), Gaps = 9/349 (2%)

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  L+  LCK G       +F  M+ +GIL D +I  +L+      GK+  A + L ++
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEV 170

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G +    +YN+++  L +    D+A  LF   ++    PD  + N L+     +G +
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVF-EELKGKGYS-SVPIY 415
           D  F+    M    F    D+  +   + G  +   I    D+  E++  KG S  V  Y
Sbjct: 231 DKAFEFFQNMGN--FGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITY 288

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             ++    ++G++K A  LF +M    ++ N  +F++ I    + G++  A   + K++ 
Sbjct: 289 TSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLL 348

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEA 534
           +  +P V  +  L  G C+ GE++  + L  +  + N++  P  + YA+ I  +C+    
Sbjct: 349 LGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLS--PNVYTYAVLINALCKENRI 406

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            +    L  +      P   I + +I G CK G ++EA  +   ++E+K
Sbjct: 407 REARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKK 455


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 127/466 (27%), Positives = 192/466 (41%), Gaps = 67/466 (14%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           NAL+YC     L R            G+I +    + +M R    PDVF Y  +I  L  
Sbjct: 9   NALSYCYLVKALCRT-----------GKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCK 57

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI------ 269
            R +   +  +E M     E DV+ Y TL+ GLCK GRV +   LF  M+  GI      
Sbjct: 58  ARRISRAIEFFETMP----EPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVT 113

Query: 270 ---LID--------RAIYGVL------------------IEGLVGEGKVGKACDLLKDLV 300
              LID           YG+L                  I GL    KV +A  L +++ 
Sbjct: 114 YTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMK 173

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +G + D   YN++I GLC  ++  +A  L  V V++   PD  T   L+       R+ 
Sbjct: 174 LAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIK 233

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGK---EERIMMALDVFEELKGKGYSSVPIYNI 417
             F L   M K     A DL      LV K     ++  AL V      + Y + P   I
Sbjct: 234 EAFVLFQGMAKQ--GCAPDLVTH-TVLVSKLCIRRKLRPALSVV-----RNYPACPEAVI 285

Query: 418 LMGALL-EIGEVK---KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           L   +  E+G  +   +A  L  KM    +  N ++++   +   +  + + A     ++
Sbjct: 286 LYTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKGLGDWKEGMRAYREFRRM 345

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           +E    P + AYN L  G CK   +D A  +VR  +      P    Y   + H CR G+
Sbjct: 346 LEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRY-MDQSGLPPNIVTYNTLVGHHCRKGK 404

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            E I E+L+ M   G  P+    S +++G+ + G ++ A   F NL
Sbjct: 405 VEAIGELLHTMVSRGRQPDVATWSTLVAGLFRVGQVDAAYS-FLNL 449



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 97/271 (35%), Gaps = 74/271 (27%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           Y  ++  LCR  + DKA        ++ L PD  T N                       
Sbjct: 13  YCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYN----------------------- 49

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKK 430
                V  D        + K  RI  A++ FE +       V  YN L+G L + G V +
Sbjct: 50  -----VVIDT-------LCKARRISRAIEFFETMPE---PDVVTYNTLLGGLCKNGRVAQ 94

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A  LFG M G  +                                    PS   Y  L  
Sbjct: 95  ACSLFGSMEGAGI-----------------------------------TPSDVTYTTLID 119

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
             CK+ + + A  L++  + +    PT + Y   I  +C++ + ++  ++  EM   GC 
Sbjct: 120 VFCKMCQFETAYGLLQ-LMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCK 178

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           P+ V  + +I G+C    L EA+ + T + E
Sbjct: 179 PDRVTYNTLIHGLCVKQRLHEAKDLLTVMVE 209



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 69/183 (37%), Gaps = 13/183 (7%)

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N+LS+   ++    +G I +AC    ++     VP V  YN +   LCK   I  A+   
Sbjct: 9   NALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFF 68

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
                     P    Y   +  +C++G   +   +   M   G  P++V  + +I   CK
Sbjct: 69  -----ETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCK 123

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAK 625
               E A  +   +  RK         Y  I+    K +  D      + + L  ++K  
Sbjct: 124 MCQFETAYGLLQLMASRK--CSPTVYSYCSIINGLCKNRKVD------QAYQLFEEMKLA 175

Query: 626 GCK 628
           GCK
Sbjct: 176 GCK 178



 Score = 45.4 bits (106), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 5/100 (5%)

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+  +Y  L K LC+ G+ID A   + + +      P  F Y + I  +C++    + IE
Sbjct: 8   PNALSYCYLVKALCRTGKIDKACSTIAE-MAREKLVPDVFTYNVVIDTLCKARRISRAIE 66

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
               M +    P+ V  + ++ G+CK+G + +A  +F ++
Sbjct: 67  FFETMPE----PDVVTYNTLLGGLCKNGRVAQACSLFGSM 102


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 113/470 (24%), Positives = 197/470 (41%), Gaps = 33/470 (7%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           R + P +  EV+K  ++P L  KFF ++       H F +Y+ L   L +  L  +A  V
Sbjct: 72  RNLNPSIAFEVIKRFSDPLLGLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIV 131

Query: 175 PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
            + M S G +                PD      ++   A    LD+      E+    +
Sbjct: 132 FDCMRSDGIL----------------PDSSILELLVSSYARMGKLDSAKNFLNEVHCYGI 175

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           +     Y  L+  L K   V     LFRE  E   + D   + +LI GL   G++ KA +
Sbjct: 176 KVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFE 235

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCC 353
             +++ + G   D+  YN++I G CRV +  K + L  E  +   ++PD  T   ++   
Sbjct: 236 FFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGY 295

Query: 354 AEMGRMDNFFKLLAQM-------EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKG 406
            ++G M    +L  +M           F+V  D         GK   +  A+ ++E++  
Sbjct: 296 CKLGDMKAASELFDEMVSSGIKPNDFTFNVLID-------GFGKVGNMRSAMVMYEKMLL 348

Query: 407 KG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G    V  +  L+      GEV + L L+ +M+  NL  N  ++++ I    +   I E
Sbjct: 349 LGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIRE 408

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A      +     VP    YN +  G CK G++D A  +V + +      P +  + + I
Sbjct: 409 ARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAE-MQEKKCRPDKITFTILI 467

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           +  C  G   + I    +M +  C P+E+  +++IS + K G   EA ++
Sbjct: 468 IGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQI 517



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 158/349 (45%), Gaps = 9/349 (2%)

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  L+  LCK G       +F  M+ +GIL D +I  +L+      GK+  A + L ++
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEV 170

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G +    +YN+++  L +    D+A  LF   ++    PD  + N L+     +G +
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVF-EELKGKGYS-SVPIY 415
           D  F+    M    F    D+  +   + G  +   I    D+  E++  KG S  V  Y
Sbjct: 231 DKAFEFFQNMGN--FGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITY 288

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             ++    ++G++K A  LF +M    ++ N  +F++ I    + G++  A   + K++ 
Sbjct: 289 TSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLL 348

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEA 534
           +  +P V  +  L  G C+ GE++  + L  +  + N++  P  + YA+ I  +C+    
Sbjct: 349 LGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLS--PNVYTYAVLINALCKENRI 406

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            +    L  +      P   I + +I G CK G ++EA  +   ++E+K
Sbjct: 407 REARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKK 455


>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/487 (22%), Positives = 202/487 (41%), Gaps = 56/487 (11%)

Query: 121 LVAEVLKVENNPTLASKFFH---WAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177
           LV  +LK  NNP LA + F     +  ++ +  + A+   +A  L R  +    +++  L
Sbjct: 5   LVKALLKNTNNPRLAWRIFKRIFSSPSEESHGISLAATPTMACILVRAKMHEEIEELHNL 64

Query: 178 MDSQG----RIAEMLEILE------------------KMRRNLCKPDVFAYTAMIRVLAA 215
           + S      +++ +L ++                   + R    KP ++ Y  ++     
Sbjct: 65  ILSSSIQKTKLSSLLSVVSIFAKSNHIDKAFPQFQFVRSRFPENKPGIYLYNVLLESCIR 124

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
           ER ++    ++++M    +  +   +  LI  LC    V    ELF EM E G   +   
Sbjct: 125 ERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFT 184

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           +G+L+ G    G   K  +LL  +   G   +  +YN+I+   CR  + D + KL E   
Sbjct: 185 FGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMR 244

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM 395
           ++ L PD  T N  +    + G++ +  ++ + ME                         
Sbjct: 245 EEGLVPDIVTFNSRISALCKEGKVLDASRIFSDME------------------------- 279

Query: 396 MALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
                 +E  G    +   YN+++    ++G ++ A  LF  +R  +  V+  S++I +Q
Sbjct: 280 -----LDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQ 334

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
             V  G  +EA     ++I+    PS+ +YN L  GLCK+G +  A  +V     N  S 
Sbjct: 335 GLVRHGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVS- 393

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    Y   +   C  G+ +    +L EM +  C PN   C+ ++  +   G + EA ++
Sbjct: 394 PDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEEL 453

Query: 576 FTNLRER 582
              + E+
Sbjct: 454 LRKMNEK 460



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 101/446 (22%), Positives = 185/446 (41%), Gaps = 26/446 (5%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +++   I+  M+RN   PD   Y  ++    +   +DA   + +EM ++    +    
Sbjct: 375 GMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTC 434

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK---- 297
             L+  L   GR+    EL R+M E G  +D     ++++GL G G++ KA +++K    
Sbjct: 435 NILLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRV 494

Query: 298 -------------------DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
                               L+++    DL  Y++++ GLC+  +F +A  LF   + + 
Sbjct: 495 HGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEK 554

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL 398
           L PD    N  +    + G++ + F++L  MEK     + +        +G + +I    
Sbjct: 555 LQPDSLAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIH 614

Query: 399 DVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
            + +E++ KG S ++  YN  +  L E G+V+ A  L  +M   N+  N  SF   I   
Sbjct: 615 GLMDEMREKGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAF 674

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
            +  D   A E     + +        Y+ +   L   G++  A  L+   L       T
Sbjct: 675 CKVPDFDMAQEVFETAVSICGQKE-GLYSLMFNELLAAGQLLKATELLEAVLDRGFELGT 733

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
            F Y   ++ +C+  E E    +L++M  +G   +      +I G+ K G  +EA     
Sbjct: 734 -FLYKDLVVSLCKKDELEVASGILHKMIDKGYGFDPAALMPVIDGLGKMGNKKEANNFAE 792

Query: 578 NLRERKLLTEANTIVYDEILIEHMKK 603
            + E   + E    V       H KK
Sbjct: 793 KMMEMASVGEVANKVDPNATDIHQKK 818



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 152/364 (41%), Gaps = 32/364 (8%)

Query: 162 LSRNNLFRAADQVPELMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
           + RNN    A     L+ S    GRI+E  E+L KM       D      ++  L     
Sbjct: 422 MMRNNCLPNAYTCNILLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGE 481

Query: 219 LDACLRVWEEMK-------------------KDLVE----ADVMAYVTLIMGLCKGGRVV 255
           LD  + + + M+                     L+E     D++ Y TL+ GLCK GR  
Sbjct: 482 LDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFA 541

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
               LF EM    +  D   Y + I     +GK+  A  +LKD+   G    L  YNS+I
Sbjct: 542 EAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLI 601

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            GL    Q  + + L +   +  ++P+  T N  +    E G++++   LL +M  ++ +
Sbjct: 602 LGLGIKNQIFEIHGLMDEMREKGISPNICTYNTAIQYLCEGGKVEDATNLLDEM--MQKN 659

Query: 376 VAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKAL 432
           +A ++   F++L+G   K     MA +VFE           +Y+++   LL  G++ KA 
Sbjct: 660 IAPNVFS-FKYLIGAFCKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAAGQLLKAT 718

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            L   +     E+ +  +   +    +  ++  A    +K+I+       AA   +  GL
Sbjct: 719 ELLEAVLDRGFELGTFLYKDLVVSLCKKDELEVASGILHKMIDKGYGFDPAALMPVIDGL 778

Query: 493 CKIG 496
            K+G
Sbjct: 779 GKMG 782



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 1/111 (0%)

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P    +N L + LC    +DAA  L  D +      P EF + + +   C++G  +K +E
Sbjct: 145 PETYTFNLLIRALCDSSCVDAARELF-DEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLE 203

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +LN M   G  PN+V+ + I+S  C+ G  +++ K+   +RE  L+ +  T
Sbjct: 204 LLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVT 254


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 182/419 (43%), Gaps = 51/419 (12%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           + G K N   YN+L    +R                  R+AEML+++E       +P V 
Sbjct: 95  RHGVKVNALCYNSLLDAYTREK-------------DDDRVAEMLKVMEN---EGIEPTVG 138

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            YT ++  L+A R++     V+EEMK   +  DV  Y ++I   C+ G V R  E+F E 
Sbjct: 139 TYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDEC 198

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
             NGI  +   YG LI G    G++  A  L+ D+   G   +  ++N++I G CR    
Sbjct: 199 VGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMV 258

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           DKA ++  +  +  +  D  T N L        RMD    LL                  
Sbjct: 259 DKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLL------------------ 300

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                   RIM+        KG   + V  Y  L+      G++ +A  LF +M G   E
Sbjct: 301 --------RIMIE-------KGVRPNHVS-YTTLISIHCNEGDMVEARRLFREMAGNGAE 344

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            + +++++ +  +++ G I EA    N++ +   VP + +Y  L  G C  G++D A+ L
Sbjct: 345 PSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRL 404

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
             + +    S P    Y   I  + + G +E+  ++ + M  +G  P++ + SA++  +
Sbjct: 405 FEE-MKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSL 462



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 162/370 (43%), Gaps = 28/370 (7%)

Query: 224 RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
           ++ +EM +  V+ + + Y +L+    +     R  E+ + M+  GI      Y +L++GL
Sbjct: 88  QLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGL 147

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
                + K   + +++       D+  Y+S+I   CR     +A ++F+  V + + P+ 
Sbjct: 148 SAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNE 207

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQME-------KLKFSVAAD-------LEKFFEFLVG 389
            T   L+    ++G+M+    L+  M+       ++ F+   D       ++K  E  + 
Sbjct: 208 HTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKM- 266

Query: 390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
             E++ + LDV+             YN L   L     + +A  L   M    +  N +S
Sbjct: 267 IMEKMGIELDVY------------TYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVS 314

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           ++  I  H   GD++EA     ++      PS+  YN +  G  K G I  A    ++ +
Sbjct: 315 YTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERF-KNEM 373

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
                 P  + YA  +   C +G+ +  + +  EM Q G  PN V  +A+ISG+ K G  
Sbjct: 374 EKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRS 433

Query: 570 EEARKVFTNL 579
           EEA +++ N+
Sbjct: 434 EEAFQLYDNM 443



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 9/312 (2%)

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           V+++G    G+V  A  LL ++   G + +   YNS++    R K  D+  ++ +V   +
Sbjct: 72  VVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENE 131

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERI 394
            + P   TV    +    +    +  K+ A  E++K    +    F+  ++    +   +
Sbjct: 132 GIEP---TVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNV 188

Query: 395 MMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
             A +VF+E  G G   +   Y  L+    +IG+++ A  L   M+   + +N + F+  
Sbjct: 189 RRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTM 248

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
           I  +     + +A E    + +M     V  YN L  GL +   +D A  L+R  +    
Sbjct: 249 IDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLR-IMIEKG 307

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
             P    Y   I   C  G+  +   +  EM   G  P+ V  + ++ G  K G++ EA 
Sbjct: 308 VRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAE 367

Query: 574 KVFTNLRERKLL 585
           + F N  E+K L
Sbjct: 368 R-FKNEMEKKGL 378



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 96/207 (46%), Gaps = 16/207 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G + +  +YN LA  L R N    A  +  +M  +G                 +P+ 
Sbjct: 269 EKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKG----------------VRPNH 312

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            +YT +I +   E ++    R++ EM  +  E  ++ Y  ++ G  K G +        E
Sbjct: 313 VSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNE 372

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M++ G++ D   Y  L+ G    GKV  A  L +++   G + +L  Y ++I GL +  +
Sbjct: 373 MEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGR 432

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            ++A++L++  + D L PD +  + L+
Sbjct: 433 SEEAFQLYDNMLGDGLTPDDALYSALV 459


>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/458 (20%), Positives = 194/458 (42%), Gaps = 53/458 (11%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+GY  N   +NA+ +    +                G++ + +E+ + M++    PDV 
Sbjct: 276 QRGYPCNNYCFNAVIHGFCHD----------------GQVHKAIEVFDGMKKCGFVPDVH 319

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
           +Y+ ++  L  + ++     +  EM ++ +  ++++Y +L+ GLC+ GRV    ELF+ +
Sbjct: 320 SYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRL 379

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K+ G   D  +Y +++ G      +    DL  D+V   +  D   Y+S+I   CR +Q 
Sbjct: 380 KDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQL 439

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +A ++FE+ V D + P+  T   L+   +  G +   F  L ++   +F V        
Sbjct: 440 KEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVR--QFGVVP------ 491

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                                     S+  Y +++  L ++ +      +F  M      
Sbjct: 492 --------------------------SLCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYV 525

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            +++ +SI I   V++ D+ EA   + K+++    P++  Y  L  GLC   ++   M L
Sbjct: 526 PDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTL 585

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
            +  +G     P    Y   I   C+    +  +E+  EM  EG   +  + + +I G  
Sbjct: 586 FKHMIGE-GLAPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFS 644

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
           K   ++ A+     +  + L      + Y ++++ + K
Sbjct: 645 KVLAMDGAQLFMEEMMNKGL--TPTVVTYTDLIVGYFK 680



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/424 (20%), Positives = 187/424 (44%), Gaps = 14/424 (3%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVL--AAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
            + + M+ +   P+V++Y+ ++ +    A+  L+  L +  EM+ + V  +   Y T + 
Sbjct: 197 SLFDDMKSSGPSPNVYSYSVLMSMYTHGAKLCLEEALELLSEMEVEGVRPNAATYATYLY 256

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC   +V       + + + G   +   +  +I G   +G+V KA ++   +   G+  
Sbjct: 257 GLCHAKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQVHKAIEVFDGMKKCGFVP 316

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D+  Y+ ++ GLC+       Y +     ++ + P+  + + LL      GR++  F+L 
Sbjct: 317 DVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELF 376

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI---YNILMGALL 423
            +++   F     +         +   + +  D++ ++    +  VP    Y+ L+ A  
Sbjct: 377 KRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNF--VPDAYNYSSLIYAYC 434

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
              ++K+AL +F  M    +  N ++ +I +      G I EA    +K+ +   VPS+ 
Sbjct: 435 RHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLC 494

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
            Y  +  GLCK+ + +    +  D +  G V   P    Y++ I    ++ + ++   + 
Sbjct: 495 TYRVIIHGLCKVNKPNDMWGIFADMIKRGYV---PDTVLYSIIIDGFVKALDLQEAFRLY 551

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
            +M  EG  PN    +++I+G+C    L E   +F ++    L    + I+Y  ++  + 
Sbjct: 552 YKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGL--APDRILYTSLIACYC 609

Query: 602 KKKT 605
           K+  
Sbjct: 610 KRSN 613



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 97/456 (21%), Positives = 188/456 (41%), Gaps = 53/456 (11%)

Query: 186 EMLEILEKMRRNL----CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           E+ E++  +  NL      P V+A   +IRV       +  L  + E KK  VE  V  +
Sbjct: 124 ELFELVPMLASNLGGSMTLPQVYA--TVIRVFVELSMFEDALVTYVEAKKVGVELQVCNF 181

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENG---------ILI--------------------- 271
             L+  L +G +++    LF +MK +G         +L+                     
Sbjct: 182 --LLKRLVEGNQIMYARSLFDDMKSSGPSPNVYSYSVLMSMYTHGAKLCLEEALELLSEM 239

Query: 272 -------DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
                  + A Y   + GL    +V  A + L+ L   GY  +   +N++I G C   Q 
Sbjct: 240 EVEGVRPNAATYATYLYGLCHAKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQV 299

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            KA ++F+   +    PD  + + L+    + G +   + +L +M   +  +  +L  + 
Sbjct: 300 HKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMA--RNGITPNLVSYS 357

Query: 385 EFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGL 441
             L G  +  R+ +A ++F+ LK +G+    I Y+I++    +  +++    L+  M   
Sbjct: 358 SLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHH 417

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
           N   ++ ++S  I  +     + EA E    ++     P+V     L  G    G I  A
Sbjct: 418 NFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEA 477

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
            + + D +      P+   Y + I  +C+  +   +  +  +M + G  P+ V+ S II 
Sbjct: 478 FLFL-DKVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSIIID 536

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           G  K   L+EA +++  + +    T+ N   Y  ++
Sbjct: 537 GFVKALDLQEAFRLYYKMVDEG--TKPNIFTYTSLI 570


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/471 (22%), Positives = 203/471 (43%), Gaps = 61/471 (12%)

Query: 182 GRIAEMLEILE-KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           G  A  LEI   +M R+   P +  Y  +I  L     L A + ++EE+ K     DV+ 
Sbjct: 59  GETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVT 118

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV----------- 289
           Y TLI  LCK G +     L   M   G + +   Y VLI GL   G++           
Sbjct: 119 YNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMT 178

Query: 290 --------------------------GKACDLLKDLVDSGYRA--DLGIYNSIIGGLCRV 321
                                      +AC+L++ L D   R   D   ++++I GLC+ 
Sbjct: 179 RKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKC 238

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-------EKLKF 374
            Q D+A    +  +     P+  T N L+    +  +M+    ++  M       + + +
Sbjct: 239 GQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITY 296

Query: 375 SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALY 433
           SV  D          K  R+  AL++   +  +G + +V  +N ++  L +     +A  
Sbjct: 297 SVLVD-------AFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQ 349

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           +  ++    L  + ++F+I I    ++G+  +A     +++  +  P V  +  L  GLC
Sbjct: 350 IALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLC 409

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           K G+++AA  ++ D +GN+   P    Y + +  +C+SG  E+  E L EM   GC P  
Sbjct: 410 KAGQVEAARDIL-DLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPES 468

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           +   +++  +C+    ++A ++ + L+      + +T+ Y+ IL++ + K 
Sbjct: 469 MTYGSLVYALCRASRTDDALQLVSKLKSFGW--DPDTVTYN-ILVDGLWKS 516



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 161/354 (45%), Gaps = 34/354 (9%)

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFR-EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           V  Y  ++  LC+ G   R  E+FR EM  +G+      Y  +I GL    ++G   +L 
Sbjct: 45  VADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELF 104

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
           ++LV  G+  D+  YN++I  LC+    ++A +L          P+  T + L+    ++
Sbjct: 105 EELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKV 164

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN 416
           GR+D   +L+ +M +    V  ++  +  FL G  ++ M A                   
Sbjct: 165 GRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTA------------------- 205

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
                  E  E+ ++L    +   L +  ++++FS  I    + G   EA  C++ +I  
Sbjct: 206 -------EACELMRSL----RDGSLRVSPDTVTFSTLIDGLCKCGQTDEA--CNDDMIAG 252

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
             VP+V  YN L  GLCK  +++ A  ++   +    + P    Y++ +   C++   ++
Sbjct: 253 GYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVT-PDVITYSVLVDAFCKASRVDE 311

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            +E+L+ M   GC PN V  ++II G+CK     EA ++   +  R L+ +  T
Sbjct: 312 ALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVT 365



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 107/491 (21%), Positives = 193/491 (39%), Gaps = 94/491 (19%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G+  +  +YN L   L +      A ++   M S+G                C P+V 
Sbjct: 109 KRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRG----------------CVPNVV 152

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEA--DVMAYVTLIMGLCKGGRVVRGHELFR 262
            Y+ +I  L     +D    + +EM +   +   +++ Y + + GLCK        EL R
Sbjct: 153 TYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMR 212

Query: 263 EMKENGILI--DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
            +++  + +  D   +  LI+GL   G+  +AC+   D++  GY  ++  YN+++ GLC+
Sbjct: 213 SLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCK 270

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-------LK 373
             + ++A+ + E  V   + PD  T + L+    +  R+D   +LL  M         + 
Sbjct: 271 ADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVT 330

Query: 374 FSVAADL--------EKF-----------------FEFLVG---KEERIMMALDVFEELK 405
           F+   D         E F                 F  L+    K      A  +FEE+ 
Sbjct: 331 FNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMV 390

Query: 406 GKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
            K     V  +  L+  L + G+V+ A  +   M  L +  N +++++ +    +SG I 
Sbjct: 391 AKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIE 450

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
           E CE   +++    VP    Y  L   LC+    D A+ LV   L +    P    Y + 
Sbjct: 451 EPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSK-LKSFGWDPDTVTYNIL 509

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNE------------------------------- 553
           +  + +SG+ E+ I VL EM  +G  P+                                
Sbjct: 510 VDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGM 569

Query: 554 ----VICSAII 560
                 CS+I+
Sbjct: 570 LPDATTCSSIL 580



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 98/195 (50%), Gaps = 14/195 (7%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLF-GKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
           SV  YNI++ +L   GE  +AL +F G+M    +    ++++  I    +S ++    E 
Sbjct: 44  SVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMEL 103

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALT 524
             ++++    P V  YN L   LCK G+++ A      M  R C+ NV +      Y++ 
Sbjct: 104 FEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVT------YSVL 157

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCP--PNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           I  +C+ G  ++  E++ EMT++ C   PN +  ++ + G+CK     EA ++  +LR+ 
Sbjct: 158 INGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDG 217

Query: 583 KLLTEANTIVYDEIL 597
            L    +T+ +  ++
Sbjct: 218 SLRVSPDTVTFSTLI 232



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 22/176 (12%)

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
           S   SVA YN + + LC+ GE   A+ + R  +      PT   Y   I  +C+S E   
Sbjct: 40  SSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGA 99

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
            +E+  E+ + G  P+ V  + +I  +CK G LEEAR++   +  R  +   N + Y  +
Sbjct: 100 GMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCV--PNVVTYSVL 157

Query: 597 ---------------LIEHMKKKTADLVLSGLKFFGL-----ESKLKAKGCKLLSS 632
                          LI+ M +K+ D++ + + +        +  + A+ C+L+ S
Sbjct: 158 INGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS 213


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/446 (23%), Positives = 194/446 (43%), Gaps = 68/446 (15%)

Query: 183 RIAEMLEILEKMRRNL-----CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           RI E LE+ + M +       C+PDV +Y+ +I  L   + +D     ++ M+      +
Sbjct: 83  RIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPN 142

Query: 238 VMAYVTLIMGLCKGGRVVRGH-----------------------------------ELFR 262
           V+ Y +LI GLCK  RV   +                                   EL  
Sbjct: 143 VVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLL 202

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            MKE G  I+   +  ++  L    +  KAC   + L+ SG + ++  YN  + GLC+  
Sbjct: 203 HMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAG 262

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM---DNFFKLLAQMEKLKFSVAAD 379
           + D+AY++    V+  + PD  T + ++    + GRM   D+ F  +   E +   V   
Sbjct: 263 KVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVT-- 320

Query: 380 LEKFFEFLVGKEE--RIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFG 436
              F   L G  E  +   A  V E++   G+   +  YN+LM  +     V+ AL ++ 
Sbjct: 321 ---FMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYH 377

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           KM+    + ++ +++  IQC   +  + EA E  + +   + VP+ A  + L + LCK G
Sbjct: 378 KMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQG 437

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           E+D A  ++ +                 ++ +C++GE ++ +EV+ +M  +G  P+E   
Sbjct: 438 EVDEACSVLDN-----------------VVEICKAGEPDEAVEVIEQMVLKGVRPDEATY 480

Query: 557 SAIISGMCKHGTLEEARKVFTNLRER 582
            A++  +C    ++ A   F  +  R
Sbjct: 481 VAVLRSLCGLDRVDSAIAEFEKMASR 506



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 188/400 (47%), Gaps = 26/400 (6%)

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           YT +I        +D    + +EMK+  V+ DV+ + TLI GLC+ GR+    E F+ M 
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMG 61

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL-----VDSGYRADLGIYNSIIGGLCR 320
           E     +   Y  ++ GL    ++ +  +L  D+        G   D+  Y+++I  LC+
Sbjct: 62  EE-CSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCK 120

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            ++ DKAY+ F+       AP+  T + L+    ++ R+D  + LL Q   LK       
Sbjct: 121 AQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQ---LKGEDMVPR 177

Query: 381 EKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
             ++  +V    ++ +    L++   +K KG+  ++  +N ++ AL +  E +KA   F 
Sbjct: 178 AMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFE 237

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           ++     + N +++++A+    ++G + EA     +++E    P V  Y+ +  G CK G
Sbjct: 238 RLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAG 297

Query: 497 EIDAA-----MMLVRDCLGNVASGPTEFKYALTILH-VCRSGEAEKIIEVLNEMTQEGCP 550
            +D A      M+V +C+ +    P  F   +T+LH      ++ +   V  +M   G  
Sbjct: 298 RMDKADDVFTRMMVHECIPH----PVTF---MTLLHGFSEHKKSREAFRVHEDMVNAGFI 350

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           P     + ++  +C   ++E A +++  ++ +K   +ANT
Sbjct: 351 PGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANT 390



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 87/436 (19%), Positives = 161/436 (36%), Gaps = 66/436 (15%)

Query: 168 FRAADQVPELM---------DSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
            +  D VP  M           QG+ +E LE+L  M+      ++  + AM+  L     
Sbjct: 169 LKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDE 228

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
            +   + +E + K   + +V+ Y   + GLCK G+V   + +  EM E+ +  D   Y  
Sbjct: 229 QEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSS 288

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           +I+G    G++ KA D+   ++          + +++ G    K+  +A+++ E  V   
Sbjct: 289 IIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAG 348

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL 398
             P   T N L+ C                                   V   + +  AL
Sbjct: 349 FIPGLQTYNVLMDC-----------------------------------VCGADSVESAL 373

Query: 399 DVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
           +++ ++K K        Y  L+  L     V +A      M   N+  N       ++  
Sbjct: 374 EIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVL 433

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG-- 515
            + G++ EAC   + ++E                +CK GE D A+ ++      V  G  
Sbjct: 434 CKQGEVDEACSVLDNVVE----------------ICKAGEPDEAVEVIEQ---MVLKGVR 474

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P E  Y   +  +C     +  I    +M   GC P  V  + +I   C     ++A ++
Sbjct: 475 PDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADDAFRI 534

Query: 576 FTNLRERKLLTEANTI 591
           F  +       +A T+
Sbjct: 535 FEAMVAAGFTPQAQTM 550



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 5/179 (2%)

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           +Y  ++    + G+V +A  L  +M+   ++++ L  S  IQ     G I EA E    +
Sbjct: 1   MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG----PTEFKYALTILHVC 529
            E    P+V  YN +  GLCK   ID  + L  D      +     P    Y+  I  +C
Sbjct: 61  GEECS-PNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALC 119

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           ++   +K  E    M   GC PN V  S++I G+CK   ++EA  +   L+   ++  A
Sbjct: 120 KAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRA 178



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 100/242 (41%), Gaps = 19/242 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPE-LMDS------------------QGRI 184
           K+KG+  N   +NA+ + L +N+    A Q  E L+ S                   G++
Sbjct: 205 KEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKV 264

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E   IL +M  +   PDV  Y+++I        +D    V+  M         + ++TL
Sbjct: 265 DEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTL 324

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + G  +  +      +  +M   G +     Y VL++ + G   V  A ++   +     
Sbjct: 325 LHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKR 384

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           + D   Y  +I  LCR ++ D+A +  +V   D++ P+ +  + L+    + G +D    
Sbjct: 385 QPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACS 444

Query: 365 LL 366
           +L
Sbjct: 445 VL 446



 Score = 46.2 bits (108), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 8/110 (7%)

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           Y   I   C++G+ ++  E+L+EM + G   + ++ S +I G+C+ G ++EA + F ++ 
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMG 61

Query: 581 ERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFF-GLESKLKAK-GCK 628
           E       N I Y+ ++    K    D    GL+ F  +E + +A  GC+
Sbjct: 62  EE---CSPNVITYNTVVNGLCKANRID---EGLELFDDMEKRYEASHGCE 105


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 109/473 (23%), Positives = 207/473 (43%), Gaps = 54/473 (11%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K KG   +  +YN +  CL +                  R+ E L I E+M+R+   P+V
Sbjct: 117 KAKGSIPSVIAYNCILTCLGKKR----------------RVEEALRIFEEMKRDAV-PNV 159

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  +I +L  E  L+A L + ++M++  +  +V+    +I  LCK  ++     +F  
Sbjct: 160 PTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEG 219

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M +     +   +  LI+GL   G+V  A  L + ++D G+     +Y S+I    +  +
Sbjct: 220 MDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGR 279

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS-------- 375
            +  +K+++  V    +PD + +N  + C  + G  +    L  ++    F         
Sbjct: 280 KEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSI 339

Query: 376 -----VAADL--EKFFEFLVGKEE--------------------RIMMALDVFEELKGKG 408
                V A L  E +  F   KE+                    ++  A  + EE+K KG
Sbjct: 340 LIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKG 399

Query: 409 Y-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
           +  +V  Y  ++  L +I  + +A  LF + +   +++N + +S  I    + G I EA 
Sbjct: 400 HPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAY 459

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
               ++++    P+V  +NCL   L K  EI+ A++  +  + ++   P +  Y++ I  
Sbjct: 460 LIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQS-MKDLKCPPNQITYSILING 518

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           +CR  +  K      EM + G  PN +  + +ISG+ K G + EA  +F+  +
Sbjct: 519 LCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFK 571



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 173/405 (42%), Gaps = 10/405 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ +   + EKM      P    YT++IR        +   ++++EM       D+   
Sbjct: 243 GRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLI 302

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T +  + K G   +G  LFRE+  +G + D   Y +LI GLV  G   +  +L   + +
Sbjct: 303 NTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKE 362

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   YN++I G C+  + +KAY+L E        P   T   ++   A++ R+D 
Sbjct: 363 QGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDE 422

Query: 362 FFKLLAQME----KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYN 416
            + L  + +    KL   V + L   F    GK  RI  A  + EEL  KG + +V  +N
Sbjct: 423 AYMLFEEAKSNGIKLNVVVYSSLIDGF----GKVGRIDEAYLIMEELMQKGLTPNVYTWN 478

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+ AL++  E+ +AL  F  M+ L    N +++SI I          +A     ++ ++
Sbjct: 479 CLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKL 538

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P+   Y  +  GL K G I  A  L      N    P    Y   I  +  + +A  
Sbjct: 539 GLKPNTITYTTMISGLAKAGNILEASGLFSRFKAN-GGIPDSASYNAMIEGLSSANKAMD 597

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              +  E   +GC  +   C  ++  + K   LE+A  V   L+E
Sbjct: 598 AYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQAAIVGAVLKE 642



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 184/415 (44%), Gaps = 11/415 (2%)

Query: 175 PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
           P ++    R+ E +E+ E++ +N   P  +AY  MI    +    D    + E  K    
Sbjct: 62  PWVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGS 121

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
              V+AY  ++  L K  RV     +F EMK + +  +   Y +LI+ L  EGK+  A +
Sbjct: 122 IPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALE 180

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           +  D+  +G   ++   N +I  LC+ ++ ++A  +FE        P+  T + L+    
Sbjct: 181 IRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLG 240

Query: 355 EMGRMDNFFKLLAQMEKLKFS----VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS 410
           + GR+D+ + L  +M          V   L + F F  G++E       +++E+   G S
Sbjct: 241 KCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSF-FKCGRKED---GHKIYKEMVHTGCS 296

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
             + + N  M  + + GE +K   LF ++       ++ S+SI I   V++G   E  E 
Sbjct: 297 PDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYEL 356

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
              + E   V    AYN +  G CK G+++ A  L+ + +      PT   Y   I  + 
Sbjct: 357 FYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEE-MKVKGHPPTVVTYGSVIDGLA 415

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           +    ++   +  E    G   N V+ S++I G  K G ++EA  +   L ++ L
Sbjct: 416 KIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGL 470


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 185/415 (44%), Gaps = 8/415 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +     + ++M  +  KP++  Y  ++  L     +D    + +EM    +  D   Y
Sbjct: 65  GDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTY 124

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L  GL + G       LF E  + G+++      +L+ GL  +GKV KA  +L+ LV 
Sbjct: 125 SILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVH 184

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G      IYN++I G C+V+    A+ +FE      + PD  T N L+    ++  +  
Sbjct: 185 TGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTK 244

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGY-SSVPIYNIL 418
              L+ +ME  K  V   +E F   +   G   ++     V  +++ KG  S V  +  +
Sbjct: 245 AEDLVMEME--KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSV 302

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + A  + G++ +A+ +   M   ++  N+  ++  I  ++ESGD  +A     K+     
Sbjct: 303 VKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGV 362

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
             S+  YN L KGLC+  +ID A  L+   L N    P    Y   I   C  G+ +K +
Sbjct: 363 SASIVTYNLLLKGLCRSSQIDEAEELIY-TLRNQGLRPDVVSYNTIISACCNKGDTDKAL 421

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
           E+L EM + G  P       ++S +   G + +   ++  +  + +  E ++ +Y
Sbjct: 422 ELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNV--EPSSSIY 474



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/370 (21%), Positives = 152/370 (41%), Gaps = 39/370 (10%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G++A+  ++LE +      P    Y  +I      R+L     ++E+MK   +  D + 
Sbjct: 169 DGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHIT 228

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI GLCK   V +  +L  EM+++G+      +  LI+     G++ K   +L D+ 
Sbjct: 229 YNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQ 288

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G ++D+  + S++   C+  +  +A  + +  +  D+AP+    N ++    E G  +
Sbjct: 289 QKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTE 348

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
             F L+                                   E++K  G S S+  YN+L+
Sbjct: 349 QAFLLV-----------------------------------EKMKNSGVSASIVTYNLLL 373

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L    ++ +A  L   +R   L  + +S++  I      GD  +A E   ++ +    
Sbjct: 374 KGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIR 433

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILHVCRSGEAEKII 538
           P++  Y+ L   L   G +     L +  L  NV   P+   Y + +    R     K+ 
Sbjct: 434 PTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVE--PSSSIYGIMVDAYVRCENDSKVA 491

Query: 539 EVLNEMTQEG 548
            +  EM+++G
Sbjct: 492 SLKKEMSEKG 501



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/390 (21%), Positives = 158/390 (40%), Gaps = 42/390 (10%)

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D  +Y  +I GL + G+     ++F EM + G++ +   Y  +I+G V  G +     L 
Sbjct: 15  DAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLR 74

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             ++  G + ++  YN ++ GLCR  + D+   L +      + PD  T + L       
Sbjct: 75  DQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRT 134

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIY 415
           G       L A+  K    + A         + K+ ++  A  V E L   G   +  IY
Sbjct: 135 GESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIY 194

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+    ++ +++ A  +F +M+  ++                                
Sbjct: 195 NTLINGYCQVRDLRGAFCIFEQMKSRHIR------------------------------- 223

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P    YN L  GLCK+  +  A  LV + +      P+   +   I     +G+ E
Sbjct: 224 ----PDHITYNALINGLCKLEMVTKAEDLVME-MEKSGVDPSVETFNTLIDAYGTAGQLE 278

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           K   VL++M Q+G   + +   +++   CK+G + EA  +  ++  + +   A   VY+ 
Sbjct: 279 KCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQ--VYNS 336

Query: 596 IL---IEHMKKKTADLVLSGLKFFGLESKL 622
           I+   IE    + A L++  +K  G+ + +
Sbjct: 337 IIDAYIESGDTEQAFLLVEKMKNSGVSASI 366



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 16/164 (9%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K  G   +  +YN L   L R++                +I E  E++  +R    +PDV
Sbjct: 358 KNSGVSASIVTYNLLLKGLCRSS----------------QIDEAEELIYTLRNQGLRPDV 401

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            +Y  +I     + + D  L + +EM K  +   +  Y TL+  L   GRV     L+++
Sbjct: 402 VSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQ 461

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           M    +    +IYG++++  V      K   L K++ + G   D
Sbjct: 462 MLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 505



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 99/262 (37%), Gaps = 38/262 (14%)

Query: 107 VVTELSKLRRVTP--DLVAEVLKVENNPTLAS-----KFFHWAGK------------QKG 147
           ++  L KL  VT   DLV E+ K   +P++ +       +  AG+            QKG
Sbjct: 232 LINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKG 291

Query: 148 YKHNFASYNALAYCLSRNNLFRAA----------DQVP------ELMDS---QGRIAEML 188
            K +  S+ ++     +N     A          D  P       ++D+    G   +  
Sbjct: 292 IKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAF 351

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
            ++EKM+ +     +  Y  +++ L     +D    +   ++   +  DV++Y T+I   
Sbjct: 352 LLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISAC 411

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C  G   +  EL +EM + GI      Y  L+  L   G+V     L + ++        
Sbjct: 412 CNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSS 471

Query: 309 GIYNSIIGGLCRVKQFDKAYKL 330
            IY  ++    R +   K   L
Sbjct: 472 SIYGIMVDAYVRCENDSKVASL 493


>gi|255561437|ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539120|gb|EEF40716.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 629

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/464 (23%), Positives = 188/464 (40%), Gaps = 65/464 (14%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K +G K N   YN L + L +N                GR   +++ +E+       P+ 
Sbjct: 205 KSRGVKPNAVVYNTLLHALCKNG-------------KVGRARSLMDEIEE-------PND 244

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             +  +I     E NL   L + E+        DV+    ++  LC  GRV    E+   
Sbjct: 245 VTFNVLIAAYCKEENLVQALVLLEKSFSLGFVPDVVTMTKVVEILCNAGRVTEAVEMLER 304

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           ++  G L+D   Y  L+ G    GK+  A   LK++   G   ++  YN +I G C    
Sbjct: 305 VEYKGGLVDVVAYNTLLRGFCRLGKIKVAHRFLKEMERKGCLPNVETYNILISGFCDSGM 364

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           FD A  +F     D ++ +F T + L+      GR++   K+L  M              
Sbjct: 365 FDMALDMFNDMKTDGISWNFDTYDTLIKGLFFGGRIEEGLKILELM-------------- 410

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
                             EE KG     +  YN ++  L +     +AL    KM  L  
Sbjct: 411 ------------------EESKGGSGGRISPYNSVLYGLYKKNMWDEALEFLMKMEKLFP 452

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
                S  I   C  E G +  A    +++I     P++  Y+CL  G C+ G +  A  
Sbjct: 453 RAVDRSLRILGFC--EKGAVKNAKMVFDQMINEGGTPNILVYDCLVHGFCQEGNLREAFE 510

Query: 504 LVRDCLGN----VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           L+ + +G+    VASG     +   I   C  G+ E  +++L++M   GC P+    S +
Sbjct: 511 LMNEMVGHGYFLVASG-----FNALIHGFCGQGKDESALKLLDDMVGRGCVPDRGTYSPL 565

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           I  +C+ G  ++A  +F  + E+ +  +++T  ++ +LI   K+
Sbjct: 566 IDALCRKGNFQKALSIFNQMIEKGITPDSST--WNSLLIRLSKE 607



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 112/484 (23%), Positives = 209/484 (43%), Gaps = 50/484 (10%)

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSR----NNLFRAADQVPEL 177
           +A ++  +N+ T A + F WA     + H+ ++Y AL   L      + +++  D++P  
Sbjct: 42  IAHLILDQNSATKALQTFKWASNLPKFTHSQSTYRALIQKLCAFHRFDTVYQLLDEMPHA 101

Query: 178 MDSQ-------------GR------IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
           + S              GR      + ++L+++ K  +N   P +  + +++ VL  + +
Sbjct: 102 IGSPPDEEIFLTVIRGLGRARMIPHVIKVLDLISKFGKN---PSLKIFNSILDVLV-KVD 157

Query: 219 LDACLRVW-EEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
           +D     + ++M    V+ D   +  L+ GLC   R+  G  L + MK  G+  +  +Y 
Sbjct: 158 IDVAREFYRKQMMGSGVQGDDYTFAILMKGLCLTNRIGDGFRLLQVMKSRGVKPNAVVYN 217

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
            L+  L   GKVG+A    + L+D     +   +N +I   C+ +   +A  L E +   
Sbjct: 218 TLLHALCKNGKVGRA----RSLMDEIEEPNDVTFNVLIAAYCKEENLVQALVLLEKSFSL 273

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIM 395
              PD  T+  ++      GR+    ++L ++E     V  D+  +   L G  +  +I 
Sbjct: 274 GFVPDVVTMTKVVEILCNAGRVTEAVEMLERVEYKGGLV--DVVAYNTLLRGFCRLGKIK 331

Query: 396 MALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
           +A    +E++ KG   +V  YNIL+    + G    AL +F  M+   +  N  ++   I
Sbjct: 332 VAHRFLKEMERKGCLPNVETYNILISGFCDSGMFDMALDMFNDMKTDGISWNFDTYDTLI 391

Query: 455 QCHVESGDILEACECHNKIIEMSQVPS------VAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           +     G I E      KI+E+ +         ++ YN +  GL K    D A+  +   
Sbjct: 392 KGLFFGGRIEEGL----KILELMEESKGGSGGRISPYNSVLYGLYKKNMWDEALEFL--- 444

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
           +      P     +L IL  C  G  +    V ++M  EG  PN ++   ++ G C+ G 
Sbjct: 445 MKMEKLFPRAVDRSLRILGFCEKGAVKNAKMVFDQMINEGGTPNILVYDCLVHGFCQEGN 504

Query: 569 LEEA 572
           L EA
Sbjct: 505 LREA 508



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 156/381 (40%), Gaps = 17/381 (4%)

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKEN-GILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
            Y  LI  LC   R    ++L  EM    G   D  I+  +I GL     +     +L  
Sbjct: 74  TYRALIQKLCAFHRFDTVYQLLDEMPHAIGSPPDEEIFLTVIRGLGRARMIPHVIKVLDL 133

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD-LAPDFSTVNPLLVCCAEMG 357
           +   G    L I+NSI+  L +V   D A + +   +    +  D  T   L+       
Sbjct: 134 ISKFGKNPSLKIFNSILDVLVKV-DIDVAREFYRKQMMGSGVQGDDYTFAILMKGLCLTN 192

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNI 417
           R+ + F+LL  M+       A +       + K  ++  A  + +E++     +   +N+
Sbjct: 193 RIGDGFRLLQVMKSRGVKPNAVVYNTLLHALCKNGKVGRARSLMDEIEEPNDVT---FNV 249

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ A  +   + +AL L  K   L    + ++ +  ++    +G + EA E   ++    
Sbjct: 250 LIAAYCKEENLVQALVLLEKSFSLGFVPDVVTMTKVVEILCNAGRVTEAVEMLERVEYKG 309

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-----CLGNVASGPTEFKYALTILHVCRSG 532
            +  V AYN L +G C++G+I  A   +++     CL NV +      Y + I   C SG
Sbjct: 310 GLVDVVAYNTLLRGFCRLGKIKVAHRFLKEMERKGCLPNVET------YNILISGFCDSG 363

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
             +  +++ N+M  +G   N      +I G+   G +EE  K+   + E K  +      
Sbjct: 364 MFDMALDMFNDMKTDGISWNFDTYDTLIKGLFFGGRIEEGLKILELMEESKGGSGGRISP 423

Query: 593 YDEILIEHMKKKTADLVLSGL 613
           Y+ +L    KK   D  L  L
Sbjct: 424 YNSVLYGLYKKNMWDEALEFL 444


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 187/428 (43%), Gaps = 50/428 (11%)

Query: 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM--- 264
           A++  L   R       +  EMK+  ++ +V+ +  LI  LCK  RV    E+F +M   
Sbjct: 310 ALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGG 369

Query: 265 KENGILI--DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY-RADLGIYNSIIGGLCRV 321
           + NG L+  D   Y  LI+GL   G+  +   L++ +        +   YN +I G C+ 
Sbjct: 370 ESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKA 429

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
              + A +LF+   +D + P+  T+N L+    + GR++                     
Sbjct: 430 SMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRING-------------------- 469

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRG 440
                          A++ F E++GKG     + Y  L+ A   +  ++KA+ LF +M  
Sbjct: 470 ---------------AVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLE 514

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
                +++ +   I    ++G +  A    +K+ E    P + ++N L  G C+  ++D 
Sbjct: 515 AGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDE 574

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A  ++++ + N    P    Y   I H  ++G+      ++ +M +EG  P  V   A+I
Sbjct: 575 AYEMLKE-MENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALI 633

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLES 620
              C +G L+EA K+F ++     +   NT++Y+ ++    +K   DL LS      L  
Sbjct: 634 HAYCLNGNLDEAMKIFRDMSSTSKVP-PNTVIYNILINSLCRKNQVDLALS------LMD 686

Query: 621 KLKAKGCK 628
            +K KG K
Sbjct: 687 DMKVKGVK 694



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/450 (21%), Positives = 183/450 (40%), Gaps = 78/450 (17%)

Query: 177 LMDSQGRIAE---MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD- 232
           L+ + GR  E   M  +L +M+    +P+V  +  +I  L   R +D  L V+E+M    
Sbjct: 311 LLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGE 370

Query: 233 ----LVEADVMAYVTLIMGLCKGGRVVRG------------------------------- 257
               LVE DV+ Y TLI GLCK GR   G                               
Sbjct: 371 SNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKAS 430

Query: 258 -----HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
                 ELF +M ++G+  +      L++G+   G++  A +   ++   G + +   Y 
Sbjct: 431 MIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYT 490

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
           ++I   C V   +KA +LF+  ++   +PD      L+   ++ G++D    +L++M++ 
Sbjct: 491 ALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEA 550

Query: 373 KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKAL 432
            FS                                    +  +N+L+       ++ +A 
Sbjct: 551 GFS----------------------------------PDIVSFNVLINGFCRKNKLDEAY 576

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            +  +M    ++ + ++++  I    ++GD   A     K+++   VP+V  Y  L    
Sbjct: 577 EMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAY 636

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           C  G +D AM + RD        P    Y + I  +CR  + +  + ++++M  +G  PN
Sbjct: 637 CLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPN 696

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRER 582
               +A+  G+ +   L +A ++   + E 
Sbjct: 697 TNTFNAMFKGLQEKNWLSKAFELMDRMTEH 726



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 158/376 (42%), Gaps = 39/376 (10%)

Query: 182 GRIAEMLEILEKMRRN-LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           GR  E L ++E+MR    C P+   Y  +I        ++A   ++++M KD V  +V+ 
Sbjct: 394 GRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVT 453

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             TL+ G+CK GR+    E F EM+  G+  +   Y  LI        + KA +L  +++
Sbjct: 454 LNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEML 513

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           ++G   D  +Y ++I GL +  + D+A  +     +   +PD  + N L+       ++D
Sbjct: 514 EAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLD 573

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
             +++L +ME                                 +K  G +    YN L+ 
Sbjct: 574 EAYEMLKEMEN------------------------------AGIKPDGVT----YNTLIS 599

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV- 479
              + G+   A  L  KM    L    +++   I  +  +G++ EA +    +   S+V 
Sbjct: 600 HFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVP 659

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKII 538
           P+   YN L   LC+  ++D A+ L+ D  +  V      F      L         K  
Sbjct: 660 PNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQ--EKNWLSKAF 717

Query: 539 EVLNEMTQEGCPPNEV 554
           E+++ MT+  C P+ +
Sbjct: 718 ELMDRMTEHACNPDYI 733



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 19/219 (8%)

Query: 389 GKEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS 447
           G+ +R   A DV   L K  G       N L+ AL    E K+   L  +M+ ++++ N 
Sbjct: 284 GRTDR---AWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNV 340

Query: 448 LSFSIAIQCHVESGDILEACECHNK---------IIEMSQVPSVAAYNCLTKGLCKIGEI 498
           ++F I I    +   + EA E   K         ++E    P V  YN L  GLCK+G  
Sbjct: 341 VTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVE----PDVITYNTLIDGLCKVGRQ 396

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           +  + LV          P    Y   I   C++   E   E+ ++M ++G PPN V  + 
Sbjct: 397 EEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNT 456

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           ++ GMCKHG +  A + F  ++ + L  + N + Y  ++
Sbjct: 457 LVDGMCKHGRINGAVEFFNEMQGKGL--KGNAVTYTALI 493


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 181/405 (44%), Gaps = 15/405 (3%)

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
           ++R  LC      +  M+R L A       L +  +M +     + + Y T+I G C  G
Sbjct: 109 RLRLPLC---TTTFNIMLRHLCATGKPVRALELLRQMPR----PNAVTYNTVIAGFCARG 161

Query: 253 RVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI- 310
           RV    E+ REM+E  GI  D+  Y  LI G    G++  A  +  +++  G  A   + 
Sbjct: 162 RVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVM 221

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           YN++IGG C V + D A +  E  VQ  +A   +T N L+       R  + + +L +M+
Sbjct: 222 YNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQ 281

Query: 371 KLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGE 427
           K  FS   D+  +   + G  KE     AL+VFEE+  KG  +  + Y  L+      G+
Sbjct: 282 KNGFS--PDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQ 339

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           V++   LF       +  + + ++  I  H   GD+  A E   ++ +    P    YN 
Sbjct: 340 VQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNT 399

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L +G C +G +D A  L+ D +      P    Y   I      G+ +  + V +EM  +
Sbjct: 400 LMRGFCLLGRLDEARTLI-DEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDK 458

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           G  P  +  +A+I G+CK    ++A  +   +  + +  + +T +
Sbjct: 459 GFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYI 503



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 145/337 (43%), Gaps = 38/337 (11%)

Query: 182 GRIAEMLEILEKM-RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           GR+ + +++ ++M  +    P    Y A+I        LD  L+  E+M +  +   V  
Sbjct: 197 GRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVAT 256

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+  L    R    + +  EM++NG   D   Y +LI G   EG   KA ++ +++ 
Sbjct: 257 YNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMS 316

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G RA    Y S+I    R  Q  +  +LF V V+  + PD    N L+      G M+
Sbjct: 317 QKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDME 376

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
             ++++A+MEK +     D+                                  YN LM 
Sbjct: 377 RAYEIMAEMEKKRIP-PDDM---------------------------------TYNTLMR 402

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
               +G + +A  L  +M    ++ + +S++  I  +   GDI +A    +++++    P
Sbjct: 403 GFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNP 462

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
           ++  YN L +GLCKI + D A  L+++    VA G T
Sbjct: 463 TLMTYNALIQGLCKIRQGDDAENLMKEM---VAKGIT 496



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 16/206 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           QKG +    +Y +L Y  SR                +G++ E   +     +   +PDV 
Sbjct: 317 QKGVRATAVTYTSLIYVFSR----------------KGQVQETDRLFNVAVKKGIRPDVV 360

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y A+I       +++    +  EM+K  +  D M Y TL+ G C  GR+     L  EM
Sbjct: 361 MYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEM 420

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            + GI  D   Y  LI G   +G +  A  +  +++D G+   L  YN++I GLC+++Q 
Sbjct: 421 TKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQG 480

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLL 350
           D A  L +  V   + PD ST   L+
Sbjct: 481 DDAENLMKEMVAKGITPDDSTYISLI 506



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 104/260 (40%), Gaps = 51/260 (19%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+G     A+YN L + L               MD+  R ++   +LE+M++N   PDVF
Sbjct: 247 QRGIAMTVATYNLLMHAL--------------FMDA--RASDAYAVLEEMQKNGFSPDVF 290

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEA---------------------------- 236
            Y  +I     E N    L V+EEM +  V A                            
Sbjct: 291 TYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVA 350

Query: 237 -------DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
                  DV+ Y  LI   C GG + R +E+  EM++  I  D   Y  L+ G    G++
Sbjct: 351 VKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRL 410

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            +A  L+ ++   G + DL  YN++I G         A ++ +  +     P   T N L
Sbjct: 411 DEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNAL 470

Query: 350 LVCCAEMGRMDNFFKLLAQM 369
           +    ++ + D+   L+ +M
Sbjct: 471 IQGLCKIRQGDDAENLMKEM 490



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 8/189 (4%)

Query: 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
           +L ++ +LK     SVPI    +  LL       A  LF  +  L L + + +F+I ++ 
Sbjct: 69  SLRLYAQLKSL---SVPIPVASLHPLLSSLPSAPAFALFADIYRLRLPLCTTTFNIMLRH 125

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
              +G  + A E    ++     P+   YN +  G C  G + AA+ ++R+        P
Sbjct: 126 LCATGKPVRALE----LLRQMPRPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAP 181

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEG-CPPNEVICSAIISGMCKHGTLEEARKV 575
            ++ YA  I   C+ G  E  ++V +EM  +G   P+ V+ +A+I G C  G L+ A + 
Sbjct: 182 DKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQY 241

Query: 576 FTNLRERKL 584
             ++ +R +
Sbjct: 242 REDMVQRGI 250



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 22/170 (12%)

Query: 137 KFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQ------------- 181
           + F+ A K KG + +   YNAL  ++C +  ++ RA + + E+   +             
Sbjct: 345 RLFNVAVK-KGIRPDVVMYNALINSHC-TGGDMERAYEIMAEMEKKRIPPDDMTYNTLMR 402

Query: 182 -----GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
                GR+ E   ++++M +   +PD+ +Y  +I   + + ++   LRV +EM       
Sbjct: 403 GFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNP 462

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
            +M Y  LI GLCK  +      L +EM   GI  D + Y  LIEGL  E
Sbjct: 463 TLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGLTTE 512


>gi|255661032|gb|ACU25685.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 373

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 168/371 (45%), Gaps = 16/371 (4%)

Query: 143 GKQKGYKH---NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLC 199
           G ++ YK    +  S +A+ Y    N  FRA           GRI + +E+ E M R   
Sbjct: 8   GAERVYKEMAESKVSPDAVVYNAMLNGFFRA-----------GRIKDCIELWELMGREDS 56

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           + +V ++  M+R L    ++D  + +WE M +     D   Y  L+ G CK G + +   
Sbjct: 57  Q-NVVSFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLR 115

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           +    +E G ++D   Y  +I GL  E K+ +A  +L  ++ +G   +  +YN++I G  
Sbjct: 116 VLGIAEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFV 175

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
            V +FD A ++F      + +P   T N L+    +  R    + L+ +M +  +     
Sbjct: 176 GVSKFDDAIRVFREMGSTNCSPTVVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPCVI 235

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
                   + +  ++ MAL ++ ++   G    V + NIL+  L  +G+ + AL L+  M
Sbjct: 236 TYSLLMKGLCQGHKVEMALQLWNQVISNGLKPDVQMLNILIHGLCSVGKTQLALMLYFDM 295

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
              N   N ++ +  ++   + GDI  A     +I+     P + +YN   KGLC    I
Sbjct: 296 NRWNCAPNLVTHNTLMEGFYKDGDIRNALGIWARILRNGLQPDIVSYNITLKGLCSCSRI 355

Query: 499 DAAMMLVRDCL 509
             A++ ++D L
Sbjct: 356 SFAILFLQDAL 366



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 146/337 (43%), Gaps = 3/337 (0%)

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C+ G +     +++EM E+ +  D  +Y  ++ G    G++ K C  L +L+      ++
Sbjct: 1   CESGDIDGAERVYKEMAESKVSPDAVVYNAMLNGFFRAGRI-KDCIELWELMGREDSQNV 59

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             +N ++ GL      DKA  ++E+  Q     D +T   L+    + G ++   ++L  
Sbjct: 60  VSFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLGI 119

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGE 427
            E+    + A         + KE ++  A+ V   + K  G  +  +YN L+   + + +
Sbjct: 120 AEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFVGVSK 179

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
              A+ +F +M   N     ++++  I    +     EA +   +++E    P V  Y+ 
Sbjct: 180 FDDAIRVFREMGSTNCSPTVVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSL 239

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L KGLC+  +++ A+ L    + N    P      + I  +C  G+ +  + +  +M + 
Sbjct: 240 LMKGLCQGHKVEMALQLWNQVISN-GLKPDVQMLNILIHGLCSVGKTQLALMLYFDMNRW 298

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
            C PN V  + ++ G  K G +  A  ++  +    L
Sbjct: 299 NCAPNLVTHNTLMEGFYKDGDIRNALGIWARILRNGL 335



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 73/159 (45%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R AE  +++++M     KP V  Y+ +++ L     ++  L++W ++  + ++ DV    
Sbjct: 214 RFAEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVISNGLKPDVQMLN 273

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI GLC  G+      L+ +M       +   +  L+EG   +G +  A  +   ++ +
Sbjct: 274 ILIHGLCSVGKTQLALMLYFDMNRWNCAPNLVTHNTLMEGFYKDGDIRNALGIWARILRN 333

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
           G + D+  YN  + GLC   +   A    +  +   +AP
Sbjct: 334 GLQPDIVSYNITLKGLCSCSRISFAILFLQDALAKKIAP 372


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 163/363 (44%), Gaps = 35/363 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I +   I  ++R+   +P   ++  +I  L   RNLD   R+ + M+++ +  DV  
Sbjct: 236 EGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFT 295

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI GLCK GR+    +LF EM++ G+  +   +  LI+G     ++  A +    ++
Sbjct: 296 YSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQML 355

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + DL +YN+++ GLC+V   +KA KL +      + PD  T   L+         D
Sbjct: 356 TMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLI---------D 406

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
            + K              DLE   E   G  E  ++  +V              +  L+ 
Sbjct: 407 GYCK------------EGDLESAMEIRKGMNEEGVVLDNV-------------AFTALIS 441

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
                G V+ A     +M    ++ +  ++++ I  + + G++    +   ++      P
Sbjct: 442 GFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKP 501

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  YN L  GLCK G++  A ML+   L N+   P +  Y + +   C++G+AE ++++
Sbjct: 502 GVITYNVLMNGLCKQGQMKNANMLLEAML-NLGVTPDDITYNILLEGHCKNGKAEDLLKL 560

Query: 541 LNE 543
            NE
Sbjct: 561 RNE 563



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/475 (20%), Positives = 204/475 (42%), Gaps = 9/475 (1%)

Query: 140 HWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE-LMDSQGRIAEMLEILEKMRRNL 198
           +W      ++H   SY A+A  LS + +F+    +   L+  +G+ +        +    
Sbjct: 89  NWLSSIPTFRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAG 148

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
            +   F + A++        +   ++ +  ++    +        L+  +      V   
Sbjct: 149 TRCSNFVFDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIW 208

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
             + E+ E G       Y +LI     EG +  A  +  ++   G R     +N++I GL
Sbjct: 209 TFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGL 268

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C+ +  D+ ++L +   ++ + PD  T + L+    + GR+D   +L  +M++    +  
Sbjct: 269 CKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQR--GLRP 326

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
           +   F   + G  +  RI  A++ + ++   G    + +YN L+  L ++G+V KA  L 
Sbjct: 327 NGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLV 386

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +MR + ++ + ++++  I  + + GD+  A E    + E   V    A+  L  G C+ 
Sbjct: 387 DEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRD 446

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G +  A   +R+ +      P +  Y + I   C+ G  +   ++L EM   G  P  + 
Sbjct: 447 GRVRDAERTLREMV-EAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVIT 505

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVL 610
            + +++G+CK G ++ A  +   +    L    + I Y+ +L  H K   A+ +L
Sbjct: 506 YNVLMNGLCKQGQMKNANMLLEAMLN--LGVTPDDITYNILLEGHCKNGKAEDLL 558



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 3/134 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ +    L +M     KPD   YT +I     + N+    ++ +EM+ +  +  V+ Y
Sbjct: 447 GRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITY 506

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLCK G++   + L   M   G+  D   Y +L+EG     K GKA DLLK   +
Sbjct: 507 NVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEG---HCKNGKAEDLLKLRNE 563

Query: 302 SGYRADLGIYNSII 315
            G   D   Y S++
Sbjct: 564 KGLIVDYAYYTSLV 577


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 195/429 (45%), Gaps = 20/429 (4%)

Query: 181 QGRIAEMLEILEKM-----RRNLCKPDVFAYTAMIRVLAAE-RNLDACLRVWEEMKKDLV 234
           + R  + L +L  M      R    PDV +Y  +I  L  E R LD    ++++M    +
Sbjct: 175 ENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGL 234

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
             DV+ Y ++I  L K   + +   +   M +NG + +R  +  L+ G    GK   A  
Sbjct: 235 SPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIG 294

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           + K +   G   D+  YN+++G LC+  +  +A K+F+  V+    P+ +T   LL   A
Sbjct: 295 VFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYA 354

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSS 411
             G +     LL  M  ++  +  D    F  L+G   K  ++  A+ +F +++ +G + 
Sbjct: 355 TEGSLVKMHHLLDMM--VRNGIQPD-HYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNP 411

Query: 412 VPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACE 468
             + Y I+M AL  +G+V  A+  FG++    L  +++ F   I   C  +  D  +A E
Sbjct: 412 DTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWD--KAEE 469

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
              ++I     P+   +N L   LCK G +  A  +  D +  V        Y   I   
Sbjct: 470 LAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIF-DLMVRVDVQRDVITYNTLIDGY 528

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           C  G+ ++  ++L  M  +G  PNEV  + +I+G CK+G +E+A  +F  +  + +    
Sbjct: 529 CLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGV--NP 586

Query: 589 NTIVYDEIL 597
             + Y  IL
Sbjct: 587 GIVTYSTIL 595



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 108/440 (24%), Positives = 196/440 (44%), Gaps = 26/440 (5%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            +G   +  +YN++   LS+    RA D+                +L +M +N   P+  
Sbjct: 231 DQGLSPDVVTYNSIISALSKA---RAMDKAAV-------------VLVRMVKNGAMPNRI 274

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            + +++    +    +  + V++ M +D VE DV  Y TL+  LCK GR +   ++F  M
Sbjct: 275 THNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSM 334

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            + G   + A YG L+ G   EG + K   LL  +V +G + D  I+N +IG   +  + 
Sbjct: 335 VKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKV 394

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL-KFSVAADLEKF 383
           D A  LF    +  L PD  T   ++     +G++D+    +AQ  +L    +  D   F
Sbjct: 395 DDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDD---AMAQFGRLISEGLTPDAVVF 451

Query: 384 FEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRG 440
              + G    ++   A ++  E+ G+G     I +N L+  L + G V +A  +F  M  
Sbjct: 452 RNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVR 511

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
           ++++ + ++++  I  +   G + EA +    ++     P+   YN +  G CK G I+ 
Sbjct: 512 VDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIED 571

Query: 501 AMMLVRDCLG-NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           A  L R      V  G   +   L  L   R   A K  E+   M + G   +    + I
Sbjct: 572 AFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAK--ELYLWMIKSGIKFDIGTYNII 629

Query: 560 ISGMCKHGTLEEARKVFTNL 579
           + G+C++   ++A ++F NL
Sbjct: 630 LLGLCQNNCTDDALRIFQNL 649



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 142/319 (44%), Gaps = 5/319 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G++ + + +  KMRR    PD   Y  ++  L     +D  +  +  +  + +  D + 
Sbjct: 391 HGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVV 450

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  LI GLC   +  +  EL  EM   GI  +   +  L+  L  EG V +A ++   +V
Sbjct: 451 FRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMV 510

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
               + D+  YN++I G C   + D+A KL E  V D + P+  T N ++    + GR++
Sbjct: 511 RVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIE 570

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
           + F L  QM      V   +  +   L G  +  R   A +++  +   G    +  YNI
Sbjct: 571 DAFSLFRQMASK--GVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNI 628

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++  L +      AL +F  +  ++  + + +F+I I   ++ G   EA +    ++   
Sbjct: 629 ILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARG 688

Query: 478 QVPSVAAYNCLTKGLCKIG 496
            VP+V  Y  + K L + G
Sbjct: 689 LVPNVVTYWLMMKSLIEQG 707



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 96/453 (21%), Positives = 191/453 (42%), Gaps = 30/453 (6%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G+K N A+Y  L +  +                ++G + +M  +L+ M RN  +PD +
Sbjct: 336 KRGHKPNSATYGTLLHGYA----------------TEGSLVKMHHLLDMMVRNGIQPDHY 379

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            +  +I        +D  + ++ +M++  +  D + Y  ++  LC  G+V      F  +
Sbjct: 380 IFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRL 439

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              G+  D  ++  LI GL    K  KA +L  +++  G   +   +N+++  LC+    
Sbjct: 440 ISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMV 499

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +A  +F++ V+ D+  D  T N L+      G++D   KLL  M  +   V  +   + 
Sbjct: 500 ARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGM--VLDGVKPNEVTYN 557

Query: 385 EFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKA--LYLFGKMR 439
             + G  K  RI  A  +F ++  KG +  +  Y+ ++  L +      A  LYL+    
Sbjct: 558 TMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKS 617

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
           G+  ++ + +  +   C     D  +A      +  +        +N +   L K G  D
Sbjct: 618 GIKFDIGTYNIILLGLCQNNCTD--DALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHD 675

Query: 500 AAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
            A  L    L   A G  P    Y L +  +   G  E++ ++   + + GC  N  + +
Sbjct: 676 EAKDLFASLL---ARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLN 732

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           A++  + + G + +A    + + E     EA+T
Sbjct: 733 ALVGKLLQKGEVRKAGVYLSKIDENNFSLEAST 765



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 138/334 (41%), Gaps = 19/334 (5%)

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ----FDKAYKLF 331
           Y V+I+     G +  A   L  ++ SG+ A+   ++ ++  LC  K+     D A +  
Sbjct: 94  YSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIALRRM 153

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM---EKLKFSVAADLEKFFEFLV 388
            V       P+  +   LL    +  R      LL  M   +  +     D+  +   + 
Sbjct: 154 PVL---GCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVIN 210

Query: 389 G--KEERIM-MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
           G  +E R +  A  +F+++  +G S  V  YN ++ AL +   + KA  +  +M      
Sbjct: 211 GLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAM 270

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            N ++ +  +  +  SG   +A     ++      P V  YN L   LCK G    A  +
Sbjct: 271 PNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKI 330

Query: 505 VRDCLGNVASGPTEFKYALTILH-VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
             D +      P    Y  T+LH     G   K+  +L+ M + G  P+  I + +I   
Sbjct: 331 F-DSMVKRGHKPNSATYG-TLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTY 388

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            KHG +++A  +F+ +R + L    +T+ Y  ++
Sbjct: 389 TKHGKVDDAMLLFSKMRRQGL--NPDTVTYGIVM 420



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 73/168 (43%), Gaps = 8/168 (4%)

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N +++S+ I C    G +  A     ++I          ++ L K LC       AM + 
Sbjct: 90  NLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIA 149

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM-----TQEGCPPNEVICSAII 560
              +  +   P  F Y + +  +C    +++ + +L+ M     T+ G PP+ V  + +I
Sbjct: 150 LRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVI 209

Query: 561 SGMCKHG-TLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           +G+ + G  L+ A  +F  + ++ L    + + Y+ I+    K +  D
Sbjct: 210 NGLLREGRQLDTAYHLFDQMLDQGL--SPDVVTYNSIISALSKARAMD 255



 Score = 42.0 bits (97), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 41/215 (19%), Positives = 87/215 (40%), Gaps = 36/215 (16%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GRI +   +  +M      P +  Y+ +++ L   R   A   ++  M K  ++ D+  
Sbjct: 566 NGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGT 625

Query: 241 YVTLIMGLC-----------------------------------KGGRVVRGHELFREMK 265
           Y  +++GLC                                   KGGR     +LF  + 
Sbjct: 626 YNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLL 685

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
             G++ +   Y ++++ L+ +G + +  DL   L  +G  A+  + N+++G L +  +  
Sbjct: 686 ARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLNALVGKLLQKGEVR 745

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           KA        +++ + + ST   L++  +  G+ D
Sbjct: 746 KAGVYLSKIDENNFSLEASTAESLVLLVSS-GKYD 779


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 167/389 (42%), Gaps = 20/389 (5%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PDV+    +I      R L     V  ++ K   + D   + TLI GLC  G++     L
Sbjct: 145 PDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHL 204

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F +    G   D   YG L+ GL   G    A  LL+ +V    R ++  YN+II  LC+
Sbjct: 205 FDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCK 264

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK------- 373
            +Q  +A+ LF   +   ++PD  T N L+     +    +   LL +M   K       
Sbjct: 265 DRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVV 324

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
           FS   D        + KE  I +A DV + +  +G    V  Y  LM       E+ +A+
Sbjct: 325 FSTVVD-------ALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAV 377

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            +F  M       N  S++I I  + +   + +A     ++     +     YN L  GL
Sbjct: 378 KVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGL 437

Query: 493 CKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           C +G +  A+ L  +    VASG  P    Y + + ++C++    + + +L  +      
Sbjct: 438 CHVGRLQHAIALFHEM---VASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLD 494

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNL 579
            + ++ +  I GMC+ G LE AR +F+NL
Sbjct: 495 ADILVYNIAIDGMCRAGELEAARDLFSNL 523



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 174/374 (46%), Gaps = 16/374 (4%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+     +L K+ +  C+PD   +  +IR L  E  +   L ++++   +  + DV+ Y 
Sbjct: 162 RLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYG 221

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TL+ GLCK G       L R M +     +   Y  +I+ L  + +V +A +L  +++  
Sbjct: 222 TLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITK 281

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD---FSTVNPLLVCCAEMGRM 359
           G   D+  YNS+I  LC + ++     L    V   + P+   FSTV   L  C E G +
Sbjct: 282 GISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDAL--CKE-GMI 338

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKG-YSSVPIYN 416
                ++  M  +K  V  D+  +   + G   R  M  A+ VF+ +  KG   +V  YN
Sbjct: 339 AIAHDVVDMM--IKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYN 396

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKII 474
           IL+    +I  + KA+ L  +M    L  ++++++  I   CHV  G +  A    ++++
Sbjct: 397 ILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHV--GRLQHAIALFHEMV 454

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
              Q+P +  Y  L   LCK   +  AM+L++   G+         Y + I  +CR+GE 
Sbjct: 455 ASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADI-LVYNIAIDGMCRAGEL 513

Query: 535 EKIIEVLNEMTQEG 548
           E   ++ + ++ +G
Sbjct: 514 EAARDLFSNLSCQG 527



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 174/399 (43%), Gaps = 12/399 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P    +T ++  +A  ++    L +  +M    +  DV     LI   C   R+     +
Sbjct: 110 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSV 169

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             ++ + G   D   +  LI GL  EGK+G+A  L    +  G++ D+  Y +++ GLC+
Sbjct: 170 LAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCK 229

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           V     A +L    VQ +  P+    N ++    +  ++   F L ++M  +   ++ D+
Sbjct: 230 VGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEM--ITKGISPDI 287

Query: 381 ---EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGK 437
                    L    E   +   + E +  K   +V +++ ++ AL + G +  A  +   
Sbjct: 288 FTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDM 347

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M    +E + ++++  +  H    ++ EA +  + ++    VP+V +YN L  G C+I  
Sbjct: 348 MIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQR 407

Query: 498 IDAAMMLVR--DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           +D AM L+      G +A   T   Y   I  +C  G  +  I + +EM   G  P+ V 
Sbjct: 408 MDKAMGLLEQMSLQGLIADTVT---YNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVT 464

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
              ++  +CK+  L EA  +   +    L  +A+ +VY+
Sbjct: 465 YRILLDYLCKNHHLAEAMVLLKAIEGSNL--DADILVYN 501



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 3/159 (1%)

Query: 177 LMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD     +EM   +++ + M    C P+V +Y  +I      + +D  + + E+M    
Sbjct: 363 LMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQG 422

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           + AD + Y TLI GLC  GR+     LF EM  +G + D   Y +L++ L     + +A 
Sbjct: 423 LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAM 482

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
            LLK +  S   AD+ +YN  I G+CR  + + A  LF 
Sbjct: 483 VLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFS 521



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 80/174 (45%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           V + +  +G IA   ++++ M +   +PDV  YTA++        +D  ++V++ M    
Sbjct: 328 VVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG 387

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
              +V +Y  LI G C+  R+ +   L  +M   G++ D   Y  LI GL   G++  A 
Sbjct: 388 CVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAI 447

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
            L  ++V SG   DL  Y  ++  LC+     +A  L +     +L  D    N
Sbjct: 448 ALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYN 501


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 173/403 (42%), Gaps = 38/403 (9%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P V  YT++I     E       +V+ EM    +  +   +  +I GLC+   +     L
Sbjct: 295 PTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRL 354

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F EMKE  I+     Y V+IEG    G + +A  LL ++V  G+  D   Y  +I GLC 
Sbjct: 355 FGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCS 414

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           V +  +A +       DDL  D   +N +       G          +  + K +V+A  
Sbjct: 415 VGRVSEAKEFV-----DDLHKDHHKLNNMCYSALVHG--------YCKEGRFKDAVSAC- 460

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
                       R+M+   V  +L          Y IL+       + +    L  +M  
Sbjct: 461 ------------RVMVERGVAMDL--------VCYAILIDGTAREHDTRALFGLLKEMHN 500

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             L  +++ ++  I  H ++G++ EA    + +++   +P+V  Y  L  GLCK G +D 
Sbjct: 501 HGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDK 560

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A +L ++ L +  + P    Y   + H+ R G  EK +++ + M + G     V  + +I
Sbjct: 561 AELLSKETLVSDVT-PNHITYGCFLDHLTRGGNMEKAVQLHHAMLK-GFLATTVSYNILI 618

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
            G C+ G +EEA K+   + +  +L +   I Y  I+ E  K+
Sbjct: 619 RGFCRLGKIEEATKLLHGMTDNDILPDY--ITYSTIIYEQCKR 659



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 173/394 (43%), Gaps = 3/394 (0%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G   +  ++  +M      P+ + +TA+I  L     +   +R++ EMK+  +    +
Sbjct: 309 NEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEV 368

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I G C+ G +     L  EM   G + D   Y  LI GL   G+V +A + + DL
Sbjct: 369 TYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDL 428

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
               ++ +   Y++++ G C+  +F  A     V V+  +A D      L+   A     
Sbjct: 429 HKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDT 488

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNIL 418
              F LL +M        A +         K   +  A  +++ +  +G   +V  Y  L
Sbjct: 489 RALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTAL 548

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L + G + KA  L  +    ++  N +++   +      G++ +A + H+ +++   
Sbjct: 549 INGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLK-GF 607

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           + +  +YN L +G C++G+I+ A  L+     N    P    Y+  I   C+    ++ I
Sbjct: 608 LATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDIL-PDYITYSTIIYEQCKRSNLQEAI 666

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           ++ + M  +G  P+ +  S ++ G C  G LE+A
Sbjct: 667 KLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKA 700



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 180/416 (43%), Gaps = 18/416 (4%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+V   +A++  L   R  +  L +++++    V+ D+  Y  ++  LC+     +  E+
Sbjct: 94  PEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKDFNKAKEM 153

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              M+ N   +   +Y VLI GL    ++ +A ++   L+  G  A++  Y         
Sbjct: 154 IHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTYYG------- 206

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             +F++A  LF+   +  L  +  T + L+      G MDN    L +M K   S+   +
Sbjct: 207 --KFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKA--SIEFTV 262

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             +   + G  K      A   F+E+  KG + +V  Y  L+      GE  KA  ++ +
Sbjct: 263 YPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNE 322

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M    +  N+ +F+  I     +  + EA     ++ E   +PS   YN + +G C+ G 
Sbjct: 323 MTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGN 382

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           I  A  L+ + +G     P  + Y   I  +C  G   +  E ++++ ++    N +  S
Sbjct: 383 ISEAFHLLDEMVGK-GFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYS 441

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
           A++ G CK G  ++A      + ER +   A  +V   ILI+   ++     L GL
Sbjct: 442 ALVHGYCKEGRFKDAVSACRVMVERGV---AMDLVCYAILIDGTAREHDTRALFGL 494



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 149/329 (45%), Gaps = 5/329 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G I+E   +L++M      PD + Y  +I  L +   +       +++ KD  + + M 
Sbjct: 380 SGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMC 439

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ G CK GR        R M E G+ +D   Y +LI+G   E        LLK++ 
Sbjct: 440 YSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMH 499

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G R D  IY ++I    +     +A+ L+++ V +   P+  T   L+    + G MD
Sbjct: 500 NHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMD 559

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYSSVPIYNIL 418
              +LL++ E L   V  +   +  FL  + +   +  A+ +   +     ++   YNIL
Sbjct: 560 K-AELLSK-ETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLKGFLATTVSYNIL 617

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +     +G++++A  L   M   ++  + +++S  I    +  ++ EA +  + +++   
Sbjct: 618 IRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGL 677

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
            P   AY+ L  G C  GE++ A  L RD
Sbjct: 678 KPDTLAYSFLVHGCCIAGELEKAFEL-RD 705



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 121/318 (38%), Gaps = 47/318 (14%)

Query: 91  FITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKH 150
           F+ D +       G   V  +S+ +    DL  +  K+ N     S   H   K+  +K 
Sbjct: 398 FVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNN--MCYSALVHGYCKEGRFK- 454

Query: 151 NFASYNALAYCLSRNNLFRAADQV--PELMDSQGR---IAEMLEILEKMRRNLCKPDVFA 205
                +A++ C        A D V    L+D   R      +  +L++M  +  +PD   
Sbjct: 455 -----DAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVI 509

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG------------- 252
           YT MI   +   NL     +W+ M  +    +V+ Y  LI GLCK G             
Sbjct: 510 YTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETL 569

Query: 253 ----------------RVVRGHELFREMKEN-----GILIDRAIYGVLIEGLVGEGKVGK 291
                            + RG  + + ++ +     G L     Y +LI G    GK+ +
Sbjct: 570 VSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLKGFLATTVSYNILIRGFCRLGKIEE 629

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A  LL  + D+    D   Y++II   C+     +A KL+   +   L PD    + L+ 
Sbjct: 630 ATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVH 689

Query: 352 CCAEMGRMDNFFKLLAQM 369
            C   G ++  F+L  +M
Sbjct: 690 GCCIAGELEKAFELRDEM 707



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 41/88 (46%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+I E  ++L  M  N   PD   Y+ +I       NL   +++W  M    ++ D +AY
Sbjct: 625 GKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAY 684

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGI 269
             L+ G C  G + +  EL  EM   G+
Sbjct: 685 SFLVHGCCIAGELEKAFELRDEMIRRGM 712



 Score = 38.9 bits (89), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 1/126 (0%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + + +++   M +      V +Y  +IR       ++   ++   M  + +  D + Y
Sbjct: 591 GNMEKAVQLHHAMLKGFLATTV-SYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITY 649

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T+I   CK   +    +L+  M + G+  D   Y  L+ G    G++ KA +L  +++ 
Sbjct: 650 STIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIR 709

Query: 302 SGYRAD 307
            G R++
Sbjct: 710 RGMRSN 715


>gi|356574119|ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Glycine max]
          Length = 942

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 136/624 (21%), Positives = 244/624 (39%), Gaps = 149/624 (23%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNN--------LF 168
           +TP LV  VL       LA  FFHWA  Q G++H   +YN++A  LSR++        L 
Sbjct: 67  LTPPLVESVLTRLRTWKLAHSFFHWASNQ-GFRHTCYTYNSIASILSRSHQTSPLKTLLK 125

Query: 169 RAADQVP------------ELMDSQGRIAEMLEILEKMR-RNLCKPDVFAYTAMIRVLAA 215
           + +D  P              +   G   E   + ++MR + LC P+ + Y  ++  L+ 
Sbjct: 126 QISDSAPCSFTPGALGFLIRCLGHAGLAREAHHLFDEMRLKGLCVPNDYCYNCLLEALSK 185

Query: 216 E-----------------------------------RNLDACLRVWEEMK-KDLVEADVM 239
                                               R  D  LRV+  M+ K  V+  V 
Sbjct: 186 SGEVDLIEARLEEMKGFGWEFDKFTLTPLLQAYCNARRFDEALRVYNVMREKGWVDGHVC 245

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +   L +   K G V +  EL   M+ +G+ ++   + VLI G V EG+V +A  L   +
Sbjct: 246 S--MLALSFSKWGDVDKAFELVERMEGHGMRLNEKTFCVLIHGFVKEGRVDRALQLFDIM 303

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF----EVTVQDDLA---------PDFSTV 346
              G+   + +++ +IGGLCR     +A  L     E  V  D+          PD   +
Sbjct: 304 CRVGFTPPVSLFDVLIGGLCRNGDSHRALSLLSEMKEFGVTPDVGIFTKLISAFPDRGVI 363

Query: 347 --------------------NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE- 385
                               N +L C    G MD   + L  M + K S    ++ FF  
Sbjct: 364 AKLLEEVPGGEEERTLVLIYNAVLTCYVNDGLMDEACRFLRMMIQSKASGDVQMDGFFNK 423

Query: 386 -----FLVG-----------KEERIMMALDVFEELKG-KGYSSVPIYNILMGALLEIGEV 428
                F  G           K +++ +AL +F ++K      SV IYN L+ +L +   +
Sbjct: 424 VKKLVFPNGASFSIVINGLLKNDQLDLALSLFNDMKQFVDRPSVLIYNNLINSLCDSNRL 483

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL------------------------ 464
           +++  L  +M+   +E    +++    C  +  D+L                        
Sbjct: 484 EESRELLREMKESGVEPTHFTYNSIYGCLCKRKDVLGAIDMLKGMRACGHEPWIKNSTLL 543

Query: 465 -----------EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
                      EAC   + +++   +P + +Y+    GL +I E++ A+ L  D L +  
Sbjct: 544 VKELCDHGMAIEACNFLDSMVQQGFLPDIVSYSAAIGGLIQIQELNRALQLFSD-LYSRG 602

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
             P      + +  +C++    +  ++L+E+  +G  P+ V  + +I   CK+G++++A 
Sbjct: 603 HCPDVVASNILMRGLCKAYRVREAEKLLDEIVVKGFFPSVVTYNLLIDSWCKNGSVDKAM 662

Query: 574 KVFTNLRERKLLTEANTIVYDEIL 597
            + + +       E N I Y  ++
Sbjct: 663 ALLSRMSGED--REPNVITYSTLV 684



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 176/438 (40%), Gaps = 56/438 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+   L++ + M R    P V  +  +I  L    +    L +  EMK+  V  DV  
Sbjct: 290 EGRVDRALQLFDIMCRVGFTPPVSLFDVLIGGLCRNGDSHRALSLLSEMKEFGVTPDVGI 349

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  LI      G + +  E     +E   L+   IY  ++   V +G + +AC  L+ ++
Sbjct: 350 FTKLISAFPDRGVIAKLLEEVPGGEEERTLV--LIYNAVLTCYVNDGLMDEACRFLRMMI 407

Query: 301 DSGYRADL---GIYNSI--------------IGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
            S    D+   G +N +              I GL +  Q D A  LF    Q    P  
Sbjct: 408 QSKASGDVQMDGFFNKVKKLVFPNGASFSIVINGLLKNDQLDLALSLFNDMKQFVDRPSV 467

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE 403
              N L+    +  R++   +LL +M++                + K + ++ A+D+ + 
Sbjct: 468 LIYNNLINSLCDSNRLEESRELLREMKESGVEPTHFTYNSIYGCLCKRKDVLGAIDMLKG 527

Query: 404 LKGKGYS------------------------------------SVPIYNILMGALLEIGE 427
           ++  G+                                      +  Y+  +G L++I E
Sbjct: 528 MRACGHEPWIKNSTLLVKELCDHGMAIEACNFLDSMVQQGFLPDIVSYSAAIGGLIQIQE 587

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           + +AL LF  +       + ++ +I ++   ++  + EA +  ++I+     PSV  YN 
Sbjct: 588 LNRALQLFSDLYSRGHCPDVVASNILMRGLCKAYRVREAEKLLDEIVVKGFFPSVVTYNL 647

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L    CK G +D AM L+    G     P    Y+  +   CR+   +  + V NEM ++
Sbjct: 648 LIDSWCKNGSVDKAMALLSRMSGE-DREPNVITYSTLVDGFCRAERPDDALLVWNEMERK 706

Query: 548 GCPPNEVICSAIISGMCK 565
           GC PN++   A+I G+CK
Sbjct: 707 GCFPNQIAFMALIYGLCK 724



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 138/334 (41%), Gaps = 16/334 (4%)

Query: 155 YNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
           +N +   + R ++    + +  L DS  R+ E  E+L +M+ +  +P  F Y ++   L 
Sbjct: 455 FNDMKQFVDRPSVLIYNNLINSLCDSN-RLEESRELLREMKESGVEPTHFTYNSIYGCLC 513

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
             +++   + + + M+    E  +     L+  LC  G  +        M + G L D  
Sbjct: 514 KRKDVLGAIDMLKGMRACGHEPWIKNSTLLVKELCDHGMAIEACNFLDSMVQQGFLPDIV 573

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
            Y   I GL+   ++ +A  L  DL   G+  D+   N ++ GLC+  +  +A KL +  
Sbjct: 574 SYSAAIGGLIQIQELNRALQLFSDLYSRGHCPDVVASNILMRGLCKAYRVREAEKLLDEI 633

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-------LKFSVAADLEKFFEFL 387
           V     P   T N L+    + G +D    LL++M         + +S   D        
Sbjct: 634 VVKGFFPSVVTYNLLIDSWCKNGSVDKAMALLSRMSGEDREPNVITYSTLVD-------G 686

Query: 388 VGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
             + ER   AL V+ E++ KG + +   +  L+  L +      AL+   +M   +++ +
Sbjct: 687 FCRAERPDDALLVWNEMERKGCFPNQIAFMALIYGLCKCCRPTTALHYLREMEQKDMKPD 746

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           S  +   I   +   D+  A E   +++     P
Sbjct: 747 SFIYIALISSFLSDMDLASAFEIFKEMVYSGYFP 780



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 4/182 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E  ++L+++      P V  Y  +I       ++D  + +   M  +  E +V+ Y 
Sbjct: 622 RVREAEKLLDEIVVKGFFPSVVTYNLLIDSWCKNGSVDKAMALLSRMSGEDREPNVITYS 681

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TL+ G C+  R      ++ EM+  G   ++  +  LI GL    +   A   L+++   
Sbjct: 682 TLVDGFCRAERPDDALLVWNEMERKGCFPNQIAFMALIYGLCKCCRPTTALHYLREMEQK 741

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
             + D  IY ++I           A+++F+  V     P+    N  +V    M  +D F
Sbjct: 742 DMKPDSFIYIALISSFLSDMDLASAFEIFKEMVYSGYFPESHDKNYSIV----MDAIDKF 797

Query: 363 FK 364
            K
Sbjct: 798 SK 799


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 163/363 (44%), Gaps = 35/363 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I +   I  ++R+   +P   ++  +I  L   RNLD   R+ + M+++ +  DV  
Sbjct: 236 EGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFT 295

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI GLCK GR+    +LF EM++ G+  +   +  LI+G     ++  A +    ++
Sbjct: 296 YSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQML 355

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + DL +YN+++ GLC+V   +KA KL +      + PD  T   L+         D
Sbjct: 356 TMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLI---------D 406

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
            + K              DLE   E   G  E  ++  +V              +  L+ 
Sbjct: 407 GYCK------------EGDLESAMEIRKGMNEEGVVLDNV-------------AFTALIS 441

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
                G V+ A     +M    ++ +  ++++ I  + + G++    +   ++      P
Sbjct: 442 GFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKP 501

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  YN L  GLCK G++  A ML+   L N+   P +  Y + +   C++G+AE ++++
Sbjct: 502 GVITYNVLMNGLCKQGQMKNANMLLEAML-NLGVTPDDITYNILLEGHCKNGKAEDLLKL 560

Query: 541 LNE 543
            NE
Sbjct: 561 RNE 563



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 94/480 (19%), Positives = 204/480 (42%), Gaps = 19/480 (3%)

Query: 140 HWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE-LMDSQGRIAEMLEILEKMRRNL 198
           +W      ++H   SY A+A  LS + +F+    +   L+  +G+ +        +    
Sbjct: 89  NWLSSIPTFRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAG 148

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
            +   F + A++        +   ++ +  ++    +        L+  +      V   
Sbjct: 149 TRCSNFVFDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIW 208

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
             + E+ E G       Y +LI     EG +  A  +  ++   G R     +N++I GL
Sbjct: 209 TFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGL 268

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK------- 371
           C+ +  D+ ++L +   ++ + PD  T + L+    + GR+D   +L  +M++       
Sbjct: 269 CKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNG 328

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKK 430
           + F+   D +        +  R+  A++ + ++   G    + +YN L+  L ++G+V K
Sbjct: 329 ITFTALIDGQY-------RSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNK 381

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A  L  +M+ + ++ + ++++  I  + + GD+  A E    + E   V    A+  L  
Sbjct: 382 ARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALIS 441

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           G C+ G +  A   +R+ +      P +  Y + I   C+ G  +   ++L EM   G  
Sbjct: 442 GFCRDGRVRDAERTLREMV-EAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHK 500

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVL 610
           P  +  + +++G+CK G ++ A  +   +    L    + I Y+ +L  H K   A+ +L
Sbjct: 501 PGVITYNVLMNGLCKQGQMKNANMLLEAMLN--LGVTPDDITYNILLEGHCKNGKAEDLL 558



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 3/134 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ +    L +M     KPD   YT +I     + N+    ++ +EM+ +  +  V+ Y
Sbjct: 447 GRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITY 506

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLCK G++   + L   M   G+  D   Y +L+EG     K GKA DLLK   +
Sbjct: 507 NVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEG---HCKNGKAEDLLKLRNE 563

Query: 302 SGYRADLGIYNSII 315
            G   D   Y S++
Sbjct: 564 KGLIVDYAYYTSLV 577


>gi|297740791|emb|CBI30973.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 114/481 (23%), Positives = 197/481 (40%), Gaps = 56/481 (11%)

Query: 128 VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEM 187
           V+ +  LA +F+       G   +  ++  L   L   N    A ++ ++M S+G+    
Sbjct: 57  VKEDIDLAREFYRKKMMMNGVSGDDYTFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNT 116

Query: 188 LEILEKMRRNLCK----------------PDVFAYTAMIRVLAAERNLDACLRVWEEMKK 231
           + I   M   LCK                P    +  +I     E NL   L + E+   
Sbjct: 117 V-IYNTMIHALCKNGKVGRARSLMNEMVEPSDVTFNVLISAYCQEENLVQALVLLEKSFS 175

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG--LVGEGKV 289
                DV+    ++  LCK GRV  G E+   ++  G ++D   Y  LI+G  ++G+ KV
Sbjct: 176 MGFVPDVVTATKVVGILCKAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKV 235

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
           G    +LKD+   G   ++  YN +  G C     D A  LF     D +  +F T + L
Sbjct: 236 GHR--VLKDMEIKGCLPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTL 293

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY 409
           +      GRM++ FK+L  M                                EE +G   
Sbjct: 294 IRGLCSGGRMEDGFKILELM--------------------------------EESRGGAG 321

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
             +  YN ++  L +  + ++AL    KM  L       S  I   C+   G I +A   
Sbjct: 322 GRISPYNSIIYGLYKKNQFEEALEFLTKMEKLFPRAVDRSLRILGFCN--EGSIGDAKRV 379

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
           ++++I+   VPSV  Y CL  G C+ G +  A  L+ + + +    PT   +   I   C
Sbjct: 380 YDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDH-GYFPTAPTFNALISAFC 438

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
             G+    ++++ +M   GC P+    S ++  +C  G  ++A ++F  + E+ +L + +
Sbjct: 439 GQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDILPDYS 498

Query: 590 T 590
           T
Sbjct: 499 T 499



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 115/255 (45%), Gaps = 26/255 (10%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD-----SQGRIA------------- 185
           K  G   NF +Y+ L   L          ++ ELM+     + GRI+             
Sbjct: 279 KTDGINWNFMTYDTLIRGLCSGGRMEDGFKILELMEESRGGAGGRISPYNSIIYGLYKKN 338

Query: 186 ---EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
              E LE L KM +    P     +  I     E ++    RV+++M K+     V+ YV
Sbjct: 339 QFEEALEFLTKMEKLF--PRAVDRSLRILGFCNEGSIGDAKRVYDQMIKEGGVPSVLVYV 396

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI G C+ G V    EL  EM ++G       +  LI    G+GKVG A  L++D+V  
Sbjct: 397 CLIHGFCQDGNVREAFELINEMVDHGYFPTAPTFNALISAFCGQGKVGSALKLMEDMVGR 456

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG---RM 359
           G   D+G Y+ ++  LC    F KA +LF   V+ D+ PD+ST N +L+C  +       
Sbjct: 457 GCLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDILPDYSTWNSMLLCLTQETVWLEG 516

Query: 360 DNFFKLLAQMEKLKF 374
           DN F L A  E+L +
Sbjct: 517 DNLFHLTAYRERLCY 531



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/419 (22%), Positives = 185/419 (44%), Gaps = 28/419 (6%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVW-EEMKKDLVEADVMAYV 242
           + +M+++L+ + +    P +  + +++ VL  E ++D     + ++M  + V  D   + 
Sbjct: 27  VRQMIKVLDLITKFGENPSLKIFNSILDVLVKE-DIDLAREFYRKKMMMNGVSGDDYTFG 85

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            L+ GLC   R+    +L + MK  G   +  IY  +I  L   GKVG+A  L+ ++V+ 
Sbjct: 86  ILMKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCKNGKVGRARSLMNEMVEP 145

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
              +D+  +N +I   C+ +   +A  L E +      PD  T   ++    + GR+   
Sbjct: 146 ---SDV-TFNVLISAYCQEENLVQALVLLEKSFSMGFVPDVVTATKVVGILCKAGRVTEG 201

Query: 363 FKLLAQMEKLKFSVAA----DLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNI 417
            ++L ++E +   V       L K F  L GK +   +   V ++++ KG   +V  YNI
Sbjct: 202 VEVLERVESMGGVVDVVAYNTLIKGFCML-GKAK---VGHRVLKDMEIKGCLPNVDTYNI 257

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L     + G +  A+ LF  M+   +  N +++   I+     G +    E   KI+E+ 
Sbjct: 258 LASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGGRM----EDGFKILELM 313

Query: 478 QVP------SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           +         ++ YN +  GL K  + + A+  +          P     +L IL  C  
Sbjct: 314 EESRGGAGGRISPYNSIIYGLYKKNQFEEALEFLTKMEKLF---PRAVDRSLRILGFCNE 370

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           G       V ++M +EG  P+ ++   +I G C+ G + EA ++   + +      A T
Sbjct: 371 GSIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGYFPTAPT 429



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 143/333 (42%), Gaps = 21/333 (6%)

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           D +I+  ++ GL     V +   +L  +   G    L I+NSI+  L + +  D A + +
Sbjct: 10  DESIFVTIVRGLGRARMVRQMIKVLDLITKFGENPSLKIFNSILDVLVK-EDIDLAREFY 68

Query: 332 -EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK 390
            +  + + ++ D  T   L+       R+ + FKLL  M+    +    +       + K
Sbjct: 69  RKKMMMNGVSGDDYTFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCK 128

Query: 391 EERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
             ++  A  +  E+      S   +N+L+ A  +   + +AL L  K   +    + ++ 
Sbjct: 129 NGKVGRARSLMNEMV---EPSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVPDVVTA 185

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD--- 507
           +  +    ++G + E  E   ++  M  V  V AYN L KG C +G+      +++D   
Sbjct: 186 TKVVGILCKAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLKDMEI 245

Query: 508 --CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
             CL NV +      Y +     C SG  +  I++ N+M  +G   N +    +I G+C 
Sbjct: 246 KGCLPNVDT------YNILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCS 299

Query: 566 HGTLEEARKVFTNLRERK-----LLTEANTIVY 593
            G +E+  K+   + E +      ++  N+I+Y
Sbjct: 300 GGRMEDGFKILELMEESRGGAGGRISPYNSIIY 332



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/199 (19%), Positives = 82/199 (41%), Gaps = 20/199 (10%)

Query: 84  HLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTL--ASKFFHW 141
            +SP    I   ++KNQF+   + +T++ KL     D    +L   N  ++  A + +  
Sbjct: 323 RISPYNSIIYGLYKKNQFEEALEFLTKMEKLFPRAVDRSLRILGFCNEGSIGDAKRVYDQ 382

Query: 142 AGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD------------------SQGR 183
             K+ G          +       N+  A + + E++D                   QG+
Sbjct: 383 MIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGYFPTAPTFNALISAFCGQGK 442

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           +   L+++E M    C PD+ +Y+ M+  L  + +    +R++ +M +  +  D   + +
Sbjct: 443 VGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDILPDYSTWNS 502

Query: 244 LIMGLCKGGRVVRGHELFR 262
           +++ L +    + G  LF 
Sbjct: 503 MLLCLTQETVWLEGDNLFH 521


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 184/401 (45%), Gaps = 22/401 (5%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G++ N  SYN +   L +N                G     + +  KM +N  KP+V  Y
Sbjct: 196 GHEPNVISYNTVINGLCKN----------------GNTIMAVRVFRKMEQNRGKPNVVTY 239

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +I  L  +R ++  +    EM    +  DV+ Y T++ G C  G++     LF+EM  
Sbjct: 240 NTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVG 299

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
             ++ D   + +L++GL  EG V +A  + + + + G   +   YN+++ G C   Q D+
Sbjct: 300 RNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDE 359

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A K+  + +    AP+ S+ N L+    +  RM+   +LL++M +   +   D   +   
Sbjct: 360 AIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLT--PDTVTYSTL 417

Query: 387 LVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           + G  +  R   AL++F+E+   G    +  Y+IL+    + G + +AL L  +M    +
Sbjct: 418 MQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRI 477

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
           + N + ++I I+    +G +  A E  +K+      P +  YN + KGL K G  D A  
Sbjct: 478 KPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYE 537

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
             R  + +    P    Y + I    ++ ++   I++++EM
Sbjct: 538 FFRK-MEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEM 577



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 112/489 (22%), Positives = 214/489 (43%), Gaps = 34/489 (6%)

Query: 147 GYKHNFASYNALAYCLSR-----------NNLFRAADQVPELMD---------SQGRIAE 186
           G  HN  S N L  CL R             +F+   Q P+ +          ++G+I E
Sbjct: 126 GVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQ-PDAITFNTLINGLCNEGKIKE 184

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
            + +  +M  +  +P+V +Y  +I  L    N    +RV+ +M+++  + +V+ Y T+I 
Sbjct: 185 AVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIID 244

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
            LCK   V    E   EM + GI  D   Y  ++ G    G++ +A  L K++V      
Sbjct: 245 SLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMP 304

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D   +N ++ GLC+     +A  + E   +    P+  T N L+       +MD   K+L
Sbjct: 305 DTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVL 364

Query: 367 AQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALL 423
             M  +    A +L  +   + G  K +R+  A  +  E+  K  +   + Y+ LM  L 
Sbjct: 365 GIM--IGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLC 422

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           ++G  ++AL LF +M    L  + +++SI +    + G + EA +   ++ E    P++ 
Sbjct: 423 QVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNII 482

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            Y  L +G+   G+++ A  L    L      P  + Y + I  + + G +++  E   +
Sbjct: 483 LYTILIRGMFIAGKLEVAKELFSK-LSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRK 541

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI-------VYDEI 596
           M  +G  P+    + II G  ++     A ++   +  ++   +++T         +DEI
Sbjct: 542 MEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLDLESHDEI 601

Query: 597 LIEHMKKKT 605
           +   M+  +
Sbjct: 602 ISRFMRGSS 610



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 193/421 (45%), Gaps = 9/421 (2%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           I + L    +M R   +P V  +   +  +A ++   + + +  +M    V  +V +   
Sbjct: 77  IDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNV 136

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           LI  LC+   V     +  +M + GI  D   +  LI GL  EGK+ +A  L  ++V SG
Sbjct: 137 LINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSG 196

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
           +  ++  YN++I GLC+      A ++F    Q+   P+  T N ++    +   ++   
Sbjct: 197 HEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAV 256

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMG 420
           + L++M  +   +  D+  +   L G     ++  A  +F+E+ G+        +NIL+ 
Sbjct: 257 EFLSEM--VDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVD 314

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L + G V +A  +   M     E N+ +++  +  +     + EA +    +I     P
Sbjct: 315 GLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAP 374

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           ++++YN L  G CK   ++ A  L+ + +      P    Y+  +  +C+ G   + + +
Sbjct: 375 NLSSYNILINGYCKSKRMNEAKRLLSE-MSEKNLTPDTVTYSTLMQGLCQVGRPREALNL 433

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
             EM   G  P+ +  S ++ G CKHG L+EA K+   + ER++  + N I+Y  ILI  
Sbjct: 434 FKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRI--KPNIILY-TILIRG 490

Query: 601 M 601
           M
Sbjct: 491 M 491



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 114/260 (43%), Gaps = 25/260 (9%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQG-------------------R 183
           +KG + N  +YNAL   YCL  +N    A +V  +M  +G                   R
Sbjct: 334 EKGAEPNAYTYNALMDGYCL--HNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKR 391

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + E   +L +M      PD   Y+ +++ L         L +++EM    +  D+MAY  
Sbjct: 392 MNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSI 451

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+ G CK G +    +L +EM E  I  +  +Y +LI G+   GK+  A +L   L   G
Sbjct: 452 LLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADG 511

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            R D+  YN +I GL +    D+AY+ F     D   PD  + N ++    +        
Sbjct: 512 IRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAI 571

Query: 364 KLLAQMEKLKFSVAADLEKF 383
           +L+ +M   +FS  AD   F
Sbjct: 572 QLIDEMVGKRFS--ADSSTF 589



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 102/224 (45%), Gaps = 19/224 (8%)

Query: 146 KGYKHNFASYNAL--AYC--------------LSRNNLFRAADQVPELMDS---QGRIAE 186
           KG   N +SYN L   YC              +S  NL         LM      GR  E
Sbjct: 370 KGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPRE 429

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
            L + ++M  +   PD+ AY+ ++       +LD  L++ +EM +  ++ +++ Y  LI 
Sbjct: 430 ALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIR 489

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           G+   G++    ELF ++  +GI  D   Y V+I+GL+ EG   +A +  + + D G+  
Sbjct: 490 GMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLP 549

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           D   YN II G  + +    A +L +  V    + D ST   LL
Sbjct: 550 DSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLL 593


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
           thaliana]
          Length = 1184

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 160/326 (49%), Gaps = 12/326 (3%)

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           +FRE  E G+  + A Y ++I  +   G++ +A  LL  +   GY  D+  Y++++ G C
Sbjct: 676 VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYC 735

Query: 320 RVKQFDKAYKLFEVTVQDDLAPD---FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           R  + DK +KL EV  +  L P+   + ++  LL    ++   +  F      E ++  +
Sbjct: 736 RFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFS-----EMIRQGI 790

Query: 377 AADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALY 433
             D   +   + G  K   I  A   F E+  +  +  V  Y  ++    +IG++ +A  
Sbjct: 791 LPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGK 850

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           LF +M    LE +S++F+  I  + ++G + +A   HN +I+    P+V  Y  L  GLC
Sbjct: 851 LFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 910

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           K G++D+A  L+ + +  +   P  F Y   +  +C+SG  E+ ++++ E    G   + 
Sbjct: 911 KEGDLDSANELLHE-MWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT 969

Query: 554 VICSAIISGMCKHGTLEEARKVFTNL 579
           V  + ++   CK G +++A+++   +
Sbjct: 970 VTYTTLMDAYCKSGEMDKAQEILKEM 995



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/426 (21%), Positives = 185/426 (43%), Gaps = 8/426 (1%)

Query: 182  GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
            GRI E   +L  M      PDV +Y+ ++        LD   ++ E MK+  ++ +   Y
Sbjct: 703  GRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIY 762

Query: 242  VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++I  LC+  ++    E F EM   GIL D  +Y  LI+G    G +  A     ++  
Sbjct: 763  GSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS 822

Query: 302  SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                 D+  Y +II G C++    +A KLF       L PD  T   L+    + G M +
Sbjct: 823  RDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKD 882

Query: 362  FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
             F++   M  ++   + ++  +   + G  KE  +  A ++  E+   G   ++  YN +
Sbjct: 883  AFRVHNHM--IQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSI 940

Query: 419  MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
            +  L + G +++A+ L G+     L  ++++++  +  + +SG++ +A E   +++    
Sbjct: 941  VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL 1000

Query: 479  VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
             P++  +N L  G C  G ++    L+   L      P    +   +   C     +   
Sbjct: 1001 QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK-GIAPNATTFNSLVKQYCIRNNLKAAT 1059

Query: 539  EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
             +  +M   G  P+      ++ G CK   ++EA  +F  ++ +      +T  Y  ++ 
Sbjct: 1060 AIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVST--YSVLIK 1117

Query: 599  EHMKKK 604
              +K+K
Sbjct: 1118 GFLKRK 1123



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 110/486 (22%), Positives = 204/486 (41%), Gaps = 27/486 (5%)

Query: 147  GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG----------------RIAEM--- 187
            G   N ASYN + + + +    + A  +  LM+ +G                R  E+   
Sbjct: 684  GVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKV 743

Query: 188  LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
             +++E M+R   KP+ + Y ++I +L     L      + EM +  +  D + Y TLI G
Sbjct: 744  WKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDG 803

Query: 248  LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
             CK G +    + F EM    I  D   Y  +I G    G + +A  L  ++   G   D
Sbjct: 804  FCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPD 863

Query: 308  LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
               +  +I G C+      A+++    +Q   +P+  T   L+    + G +D+  +LL 
Sbjct: 864  SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 923

Query: 368  QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLE 424
            +M K+   +  ++  +   + G  K   I  A+ +  E +  G ++  + Y  LM A  +
Sbjct: 924  EMWKI--GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 981

Query: 425  IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
             GE+ KA  +  +M G  L+   ++F++ +      G + +  +  N ++     P+   
Sbjct: 982  SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 1041

Query: 485  YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
            +N L K  C    + AA  + +D + +   GP    Y   +   C++   ++   +  EM
Sbjct: 1042 FNSLVKQYCIRNNLKAATAIYKD-MCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEM 1100

Query: 545  TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
              +G   +    S +I G  K     EAR+VF  +R   L   A+  ++D       K K
Sbjct: 1101 KGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGL--AADKEIFDFFSDTKYKGK 1158

Query: 605  TADLVL 610
              D ++
Sbjct: 1159 RPDTIV 1164



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 106/517 (20%), Positives = 210/517 (40%), Gaps = 52/517 (10%)

Query: 108 VTELSKLRRVTP---------------DLVAEVLKVENNPTLASKFFHWAGKQKGYKHNF 152
           +T + KLRR  P                L+  ++K++ +  L   FF WA  ++      
Sbjct: 505 ITNVIKLRRAEPLRRSLKPYECKFKTDHLIWVLMKIKCDYRLVLDFFDWARSRR------ 558

Query: 153 ASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRV 212
              N  + C+    +   A    +L  +Q  I+   E     R  L   D F        
Sbjct: 559 -DSNLESLCI----VIHLAVASKDLKVAQSLISSFWE-----RPKLNVTDSFV------- 601

Query: 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
               +  D  +  +++   D    DV   V +  GL +  R V     F +M   G+++ 
Sbjct: 602 ----QFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRV-----FEKMLNYGLVLS 652

Query: 273 RAIYGVLIEGLVGEG-KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
                V +  L  +  K   A  + ++  + G   ++  YN +I  +C++ +  +A+ L 
Sbjct: 653 VDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLL 712

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE 391
            +       PD  + + ++      G +D  +KL+  M++      + +      L+ + 
Sbjct: 713 LLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRI 772

Query: 392 ERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
            ++  A + F E+  +G      +Y  L+    + G+++ A   F +M   ++  + L++
Sbjct: 773 CKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTY 832

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +  I    + GD++EA +  +++      P    +  L  G CK G +  A   V + + 
Sbjct: 833 TAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFR-VHNHMI 891

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
                P    Y   I  +C+ G+ +   E+L+EM + G  PN    ++I++G+CK G +E
Sbjct: 892 QAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIE 951

Query: 571 EARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           EA K+        L   A+T+ Y  ++  + K    D
Sbjct: 952 EAVKLVGEFEAAGL--NADTVTYTTLMDAYCKSGEMD 986


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1164

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 161/332 (48%), Gaps = 14/332 (4%)

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           +FRE  E G+  + A Y ++I  +   G++ +A  LL  +   GY  D+  Y+++I G C
Sbjct: 656 VFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYC 715

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPL--LVC--CAEMGRMDNFFKLLAQMEKLKFS 375
           R  + DK +KL E   Q  L P+  T   +  L+C  C      + F +++ Q       
Sbjct: 716 RFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQ------G 769

Query: 376 VAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
           +  D   +   + G  K   I  A   F E+  +  +  V  Y  ++    +IG++ +A 
Sbjct: 770 ILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAG 829

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            LF +M    LE + ++F+  +  + ++G I +A   HN +I+    P+V  Y  L  GL
Sbjct: 830 KLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGL 889

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           CK G++D+A  L+ + +  +   P  F Y   +  +C+SG  E+ ++++ E    G   +
Sbjct: 890 CKEGDLDSANELLHE-MWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 948

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
            V  + ++   CK G +++A+++ T +  + L
Sbjct: 949 TVTYTTLMDAYCKSGEMDKAQEILTEMLGKGL 980



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 179/412 (43%), Gaps = 6/412 (1%)

Query: 182  GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
            GRI E   +L  M      PDV +Y+ +I        LD   ++ E+MK+  ++ +   Y
Sbjct: 683  GRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTY 742

Query: 242  VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++I  LC+  ++    E F EM   GIL D  +Y  L++G    G +  A     ++  
Sbjct: 743  GSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHS 802

Query: 302  SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                 D+  Y +II G C++    +A KLF   +   L PD  T   L+    + G + +
Sbjct: 803  RDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKD 862

Query: 362  FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
             F++   M  ++   + ++  +   + G  KE  +  A ++  E+   G   ++  YN +
Sbjct: 863  AFRVHNHM--IQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSI 920

Query: 419  MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
            +  L + G +++A+ L G+     L  ++++++  +  + +SG++ +A E   +++    
Sbjct: 921  VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGL 980

Query: 479  VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
             P++  +N L  G C  G ++    L+   L      P    +   +   C     +   
Sbjct: 981  QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK-GIAPNATTFNCLVKQYCIRNNLKAAT 1039

Query: 539  EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             +  +M   G  P+      ++ G C    ++EA  +F  ++ +      +T
Sbjct: 1040 AIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVST 1091



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 98/433 (22%), Positives = 188/433 (43%), Gaps = 10/433 (2%)

Query: 182  GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
            G + ++ +++EKM++   KP+ + Y ++I +L     L      + EM    +  D + Y
Sbjct: 718  GELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVY 777

Query: 242  VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             TL+ G CK G +    + F EM    I  D   Y  +I G    G + +A  L  +++ 
Sbjct: 778  TTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLC 837

Query: 302  SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
             G   D+  +  ++ G C+      A+++    +Q   +P+  T   L+    + G +D+
Sbjct: 838  RGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDS 897

Query: 362  FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNIL 418
              +LL +M K+   +  ++  +   + G  K   I  A+ +  E +  G ++  + Y  L
Sbjct: 898  ANELLHEMWKI--GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 955

Query: 419  MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
            M A  + GE+ KA  +  +M G  L+   ++F++ +      G + +  +  N ++    
Sbjct: 956  MDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGI 1015

Query: 479  VPSVAAYNCLTKGLCKIGEIDAAMMLVRD-CLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P+   +NCL K  C    + AA  + +D C   V   P    Y   +   C +   ++ 
Sbjct: 1016 APNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVE--PDGKTYENLVKGHCNARNMKEA 1073

Query: 538  IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
              +  EM  +G   +    S +I G  K     EAR++F  +R   L   A+  ++D   
Sbjct: 1074 WFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGL--AADKEIFDFFS 1131

Query: 598  IEHMKKKTADLVL 610
                K K  D ++
Sbjct: 1132 DTKYKGKRPDTIV 1144



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/426 (23%), Positives = 186/426 (43%), Gaps = 7/426 (1%)

Query: 169  RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA-CLRVWE 227
            R  D   +++   G + E  ++ EKM        V +    +  L+ + N  A  + V+ 
Sbjct: 599  RVFDVFFQVLVEFGMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVFR 658

Query: 228  EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
            E  +  V  +V +Y  +I  +C+ GR+   H L   M+  G   D   Y  +I G    G
Sbjct: 659  EFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFG 718

Query: 288  KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
            ++ K   L++ +   G + +   Y SIIG LCR+ +  +A + F   +   + PD     
Sbjct: 719  ELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYT 778

Query: 348  PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELK 405
             L+    + G +    K   +M      +  D+  +   + G  +   ++ A  +F E+ 
Sbjct: 779  TLVDGFCKRGDIRAASKFFYEMHSR--DITPDVLTYTAIISGFCQIGDMVEAGKLFHEML 836

Query: 406  GKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
             +G    +  +  LM    + G +K A  +   M       N ++++  I    + GD+ 
Sbjct: 837  CRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLD 896

Query: 465  EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
             A E  +++ ++   P++  YN +  GLCK G I+ A+ LV +      +  T   Y   
Sbjct: 897  SANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT-VTYTTL 955

Query: 525  ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
            +   C+SGE +K  E+L EM  +G  P  V  + +++G C HG LE+  K+   +  + +
Sbjct: 956  MDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGI 1015

Query: 585  LTEANT 590
               A T
Sbjct: 1016 APNATT 1021



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/433 (21%), Positives = 165/433 (38%), Gaps = 58/433 (13%)

Query: 144  KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCK--- 200
            KQKG K N  +Y ++   L R      A++    M  QG + + + +   +    CK   
Sbjct: 731  KQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTI-VYTTLVDGFCKRGD 789

Query: 201  -----------------PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
                             PDV  YTA+I       ++    +++ EM    +E D++ +  
Sbjct: 790  IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTE 849

Query: 244  LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
            L+ G CK G +     +   M + G   +   Y  LI+GL  EG +  A +LL ++   G
Sbjct: 850  LMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 909

Query: 304  YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
             + ++  YNSI+ GLC+    ++A KL        L  D  T   L+    + G MD   
Sbjct: 910  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDK-- 967

Query: 364  KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGAL 422
                                             A ++  E+ GKG   ++  +N+LM   
Sbjct: 968  ---------------------------------AQEILTEMLGKGLQPTIVTFNVLMNGF 994

Query: 423  LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
               G ++    L   M    +  N+ +F+  ++ +    ++  A   +  +      P  
Sbjct: 995  CLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDG 1054

Query: 483  AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
              Y  L KG C    +  A  L ++  G   S      Y++ I    +  +  +  E+ +
Sbjct: 1055 KTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVS-TYSVLIKGFFKRKKFVEAREIFD 1113

Query: 543  EMTQEGCPPNEVI 555
            +M ++G   ++ I
Sbjct: 1114 QMRRDGLAADKEI 1126


>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/458 (20%), Positives = 195/458 (42%), Gaps = 53/458 (11%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+GY  N   +NA+ +    +                G++ + +E+ + M++    PDV 
Sbjct: 276 QRGYPCNSYCFNAVIHGFCHD----------------GQVHKAVEVFDGMKKCGFVPDVH 319

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
           +Y+ ++  L  + ++     +  EM ++ +  ++++Y +L+ GLC+ GRV    ELF+ +
Sbjct: 320 SYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRL 379

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K+ G   D  +Y +++ G      +    DL  D+V   +  D   Y+S+I   CR +Q 
Sbjct: 380 KDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQL 439

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +A ++FE+ + D + P+  T   L+   +  G +   F  L ++   +F V  +L    
Sbjct: 440 KEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVR--QFGVVPNL---- 493

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                                         Y +++  L ++ +      +F  M      
Sbjct: 494 ----------------------------CTYRVIINGLCKVNKPNDVWGIFADMIKRGYV 525

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            +++ +SI I   V++ D+ EA   + K+++    P++  Y  L  GLC   ++   M L
Sbjct: 526 PDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTL 585

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
            +  +G   + P    Y   I   C+    +  +E+  EM  EG   +  + + +I G  
Sbjct: 586 FKHMIGEGLT-PDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFS 644

Query: 565 KHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
           K   ++ A+     +  + L      + Y +++I + K
Sbjct: 645 KVLAMDGAQLFMEEMMNKGL--TPTVVTYTDLIIGYFK 680



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 81/428 (18%), Positives = 188/428 (43%), Gaps = 10/428 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVL--AAERNLDACLRVWEEMKKDLVEADVMA 240
           +I  +  + + M+ +   P++++Y+ ++ +    A+  L+    +  EM+ + V  +   
Sbjct: 191 QIMYVRSLFDDMKISGPSPNIYSYSVLMSMYTHGAKLCLEEAQELLSEMEVEGVRPNAAT 250

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T + GLC+  +V       + + + G   +   +  +I G   +G+V KA ++   + 
Sbjct: 251 YGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMK 310

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G+  D+  Y+ ++ GLC+       Y +     ++ + P+  + + LL      GR++
Sbjct: 311 KCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVE 370

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI---YNI 417
             F+L  +++   F     +         +   + +  D++ ++    +  VP    Y+ 
Sbjct: 371 LAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNF--VPDAYNYSS 428

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ A     ++K+AL +F  M    +  N ++ +I +      G I EA    +K+ +  
Sbjct: 429 LIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFG 488

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
            VP++  Y  +  GLCK+ + +    +  D +      P    Y++ I    ++ + ++ 
Sbjct: 489 VVPNLCTYRVIINGLCKVNKPNDVWGIFADMIKR-GYVPDTVLYSIIIDGFVKALDLQEA 547

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             +  +M  EG  PN    +++I+G+C    L E   +F ++    L    + I+Y  ++
Sbjct: 548 FRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGL--TPDRILYTSLI 605

Query: 598 IEHMKKKT 605
             + K+  
Sbjct: 606 ACYCKRSN 613



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 103/477 (21%), Positives = 195/477 (40%), Gaps = 55/477 (11%)

Query: 161 CLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLD 220
           CL ++ +    +  PEL     ++A ML     +  ++  P V+A   +IRV       +
Sbjct: 109 CLIQSVVDHCGNAGPELF----QLAPMLA--SNLGGSMTLPQVYA--TVIRVFVELSMFE 160

Query: 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVV------------------------- 255
             L  + E KK  VE  V  +  L+ GL +G +++                         
Sbjct: 161 DALVTYVEAKKVGVELQVCNF--LLKGLVEGNQIMYVRSLFDDMKISGPSPNIYSYSVLM 218

Query: 256 ------------RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
                          EL  EM+  G+  + A YG  + GL    +V  A + L+ L   G
Sbjct: 219 SMYTHGAKLCLEEAQELLSEMEVEGVRPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRG 278

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
           Y  +   +N++I G C   Q  KA ++F+   +    PD  + + L+    + G +   +
Sbjct: 279 YPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGY 338

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
            +L +M   +  +  +L  +   L G  +  R+ +A ++F+ LK +G+    I Y+I++ 
Sbjct: 339 YMLVEMA--RNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLH 396

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              +  +++    L+  M   N   ++ ++S  I  +     + EA E    +I     P
Sbjct: 397 GCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICP 456

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +V     L  G    G I  A + + D +      P    Y + I  +C+  +   +  +
Sbjct: 457 NVVTCTILVHGFSNEGLIGEAFLFL-DKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGI 515

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             +M + G  P+ V+ S II G  K   L+EA +++  + +    T+ N   Y  ++
Sbjct: 516 FADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEG--TKPNIFTYTSLI 570


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/461 (24%), Positives = 197/461 (42%), Gaps = 52/461 (11%)

Query: 181 QGRIAEMLEILEKM---RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           + R  E LE+L  M   R     PDV +YT +I     E + D     + EM    +  D
Sbjct: 171 ENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPD 230

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ Y ++I  LCKG  + +  E+   M +NG++ +   Y  ++ G     +  +A   LK
Sbjct: 231 VVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLK 290

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            +   G   D+  YNS++  LC+  +  +A K+F+   +  L PD +T   LL   A  G
Sbjct: 291 KMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKG 350

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLV---GKEERIMMALDVFEELKGKGYS-SVP 413
            +     LL  M  ++  +  D    F  L+    K+E++  A+ VF +++  G + +V 
Sbjct: 351 ALVEMHALLDLM--VRNGIHPD-HHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVV 407

Query: 414 IYNILMGALLEIGEVKKALYLFGKM----------------------------------- 438
            Y  ++G L + G V  A+  F +M                                   
Sbjct: 408 TYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEM 467

Query: 439 --RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
             RG+ L  N++ F+  I  H + G ++E+ +  + ++ +   P+V  Y+ L  G C  G
Sbjct: 468 LDRGICL--NTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAG 525

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           ++D A  L+   + +V   P    Y   I   CR    +  + +  EM   G  PN +  
Sbjct: 526 KMDEATKLLSS-MFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 584

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           + I+ G+        A++++  + +     E +T  Y+ IL
Sbjct: 585 NIILQGLFHTRRTAAAKELYVGITKSGTQLELST--YNIIL 623



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 184/409 (44%), Gaps = 20/409 (4%)

Query: 183 RIAEMLEI-LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL---VEADV 238
           R ++ ++I L +M    C PDVF+ T +++ L  E      L +   M  D       DV
Sbjct: 137 RTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDV 196

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           ++Y T+I G  K G   + +  + EM +  I  D   Y  +I  L     + KA ++L  
Sbjct: 197 VSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTT 256

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +V +G   +   YNSI+ G C  +Q  +A    +    D + PD  T N L+    + GR
Sbjct: 257 MVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 316

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA-----LDVFEELKGKGYSSVP 413
                K+   M K    +  D+  +   L G   +  +      LD+   ++   +    
Sbjct: 317 STEARKIFDSMTKR--GLEPDIATYCTLLQGYATKGALVEMHALLDLM--VRNGIHPDHH 372

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           ++NIL+ A  +  +V +A+ +F KMR   L  N +++   I    +SG + +A     ++
Sbjct: 373 VFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQM 432

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG- 532
           I+    P++  Y  L   LC   + D A  L+ + L       T F  ++   H C+ G 
Sbjct: 433 IDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSH-CKEGR 491

Query: 533 --EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             E+EK+ ++   M + G  PN +  S +I G C  G ++EA K+ +++
Sbjct: 492 VIESEKLFDL---MVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSM 537



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 190/421 (45%), Gaps = 20/421 (4%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + EM  +L+ M RN   PD   +  +I   A +  +D  + V+ +M++  +  +V+
Sbjct: 348 TKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVV 407

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I  LCK G V      F +M + G+  +  +Y  LI  L    K  KA +L+ ++
Sbjct: 408 TYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEM 467

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +D G   +   +NSII   C+  +  ++ KLF++ V+  + P+  T + L+      G+M
Sbjct: 468 LDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKM 527

Query: 360 DNFFKLLAQMEKLKFSVAA--DLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPI 414
           D   KLL+ M    FSV    D   +   + G  +  R+  AL +F+E+   G S ++  
Sbjct: 528 DEATKLLSSM----FSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT 583

Query: 415 YNILMGALLEIGEVKKA--LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
           YNI++  L        A  LY+     G  LE+++ +  +   C     D  EA      
Sbjct: 584 YNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTD--EALRMFQN 641

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVC 529
           +           +N +   L K+G  D A    +D    +++    P    Y+L   ++ 
Sbjct: 642 LCLTDLQLETRTFNIMIGALLKVGRNDEA----KDLFAALSANGLVPDVRTYSLMAENLI 697

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
             G  E++ ++   M + GC  N  + ++I+  + + G +  A    + + E+    EA+
Sbjct: 698 EQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLSMIDEKHFSLEAS 757

Query: 590 T 590
           T
Sbjct: 758 T 758



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 93/434 (21%), Positives = 169/434 (38%), Gaps = 50/434 (11%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           V   V  Y  LI   C+ GR+  G      + + G  ++   +  L++GL  + +   A 
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 294 D--------------------LLKDLVD-------------------SGYRADLGIYNSI 314
           D                    LLK L D                    G   D+  Y ++
Sbjct: 143 DIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTV 202

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
           I G  +    DKAY  +   +   ++PD  T + ++    +   MD   ++L  M  +K 
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTM--VKN 260

Query: 375 SVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKA 431
            V  +   +   L G    E+   A+   ++++  G    V  YN LM  L + G   +A
Sbjct: 261 GVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEA 320

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
             +F  M    LE +  ++   +Q +   G ++E     + ++     P    +N L   
Sbjct: 321 RKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICA 380

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
             K  ++D A MLV   +      P    Y   I  +C+SG  +  +    +M  EG  P
Sbjct: 381 YAKQEKVDEA-MLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTP 439

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLS 611
           N ++ +++I  +C     ++A ++   + +R +    NTI ++ I+  H K+     V+ 
Sbjct: 440 NIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICL--NTIFFNSIIHSHCKEGR---VIE 494

Query: 612 GLKFFGLESKLKAK 625
             K F L  ++  K
Sbjct: 495 SEKLFDLMVRIGVK 508



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 9/197 (4%)

Query: 406 GKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
           GK   +V  Y IL+G     G +       G +      V +++F+  ++         +
Sbjct: 81  GKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSD 140

Query: 466 ACE-CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM----MLVRDCLGNVASGPTEFK 520
           A +    ++ E+S +P V +   L KGLC       A+    M+  D  G   S P    
Sbjct: 141 AMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGG--GSAPDVVS 198

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           Y   I    + G+++K     +EM      P+ V  S+II+ +CK   +++A +V T + 
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMV 258

Query: 581 ERKLLTEANTIVYDEIL 597
           +  ++   N + Y+ IL
Sbjct: 259 KNGVM--PNCMTYNSIL 273


>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
          Length = 1095

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/416 (22%), Positives = 182/416 (43%), Gaps = 4/416 (0%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R A    +L++MR     PD  +Y  +I     E  ++  + ++ +M +  ++  V  Y 
Sbjct: 314 RSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYT 373

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI G C+ GR      +  EM+  G+      Y  L+ G     K+G A DL+K L   
Sbjct: 374 ALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSR 433

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
               +  +Y  +I G C++ +  KA ++ +  + D + PD  T + L+    +MG +   
Sbjct: 434 SISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHET 493

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGA 421
            ++L++M+K        L     F   K      AL  F ++   G  ++  I+N L+ +
Sbjct: 494 KEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCS 553

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
               G + +A      M  + +  +  SF+  I  + + G++LEA   ++ ++     P 
Sbjct: 554 FYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPD 613

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           +  Y  L +GLC+ G +  A   +   L   A    E      ++ +C+ G  ++ +++ 
Sbjct: 614 ICTYGSLLRGLCQGGHLVQAKEFMVYLLEK-ACAIDEKTLNTLLVGICKHGTLDEALDLC 672

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            +M      P+    + ++ G CK G +  A  +   + E+ L+ +  TI Y  +L
Sbjct: 673 EKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPD--TIAYTCLL 726



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 107/453 (23%), Positives = 192/453 (42%), Gaps = 40/453 (8%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +QG++++   +L+KM+ N   P+   Y  ++     +    + LR+ ++M+K+ +EAD+ 
Sbjct: 242 TQGKLSKAESMLQKMK-NCRLPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLY 300

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I  LCK  R  R + L + M+E  +  D   Y  LI G  GEGK+  A  +   +
Sbjct: 301 TYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQM 360

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYK-LFEVTV-------------------QDDL 339
           +    +  +  Y ++I G CR  + D+A + L+E+ +                      L
Sbjct: 361 LRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKL 420

Query: 340 APDFSTVNPLLVCCAEMGR------MDNFFKL-----LAQMEKLKFSVAADLEKF-FEFL 387
            P    +  L      + R      +D F +L       Q+ K   +   D +   +  L
Sbjct: 421 GPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSAL 480

Query: 388 VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALL----EIGEVKKALYLFGKMRGLNL 443
           +    ++ M  +  E L     S V   N+L   L+    + G  K+AL  F  +    L
Sbjct: 481 INGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGL 540

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             NS+  +  +      G I EA +    +  M     VA++NC+    C+ G +  A  
Sbjct: 541 VANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFS 600

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
            V D +      P    Y   +  +C+ G   +  E +  + ++ C  +E   + ++ G+
Sbjct: 601 -VYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGI 659

Query: 564 CKHGTLEEARKVFTNLRERKLL--TEANTIVYD 594
           CKHGTL+EA  +   +  R +L  T   TI+ D
Sbjct: 660 CKHGTLDEALDLCEKMVTRNILPDTYTYTILLD 692



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 177/406 (43%), Gaps = 55/406 (13%)

Query: 181  QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK-KDLVEADVM 239
            +G++   L +L+ M      PD  AYT ++  L  E  + A   +++E+  K+ + AD +
Sbjct: 697  RGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCI 756

Query: 240  AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            AY +++ G  KGG++     L R M EN +    A Y +L+ G + +G++ +   L +D+
Sbjct: 757  AYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDM 816

Query: 300  VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            V  G + D   Y  +I GLC     + A K  E  V + + PD    + L+   +E  +M
Sbjct: 817  VKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKM 876

Query: 360  DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
             N  +L + M+ +      D++  FE    KE+  M AL V         S V   +I+ 
Sbjct: 877  SNALQLFSYMKWV-----GDIDGAFEL---KED--MKALGVVP-------SEVAESSIVR 919

Query: 420  GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            G L + G+V++A+ +F                                   + I+    V
Sbjct: 920  G-LCKCGKVEEAIIVF-----------------------------------SSIMRAGMV 943

Query: 480  PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
            P++A +  L  GLCK  +ID A  L +  + +         Y + I  +C        ++
Sbjct: 944  PTIATFTTLMHGLCKEFKIDDAFHL-KQLMESCGLKVDVVTYNVLITGLCNKKCICDALD 1002

Query: 540  VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
            +  EM  +G  PN      +   M   GT+++  K+  ++ +R ++
Sbjct: 1003 LYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIV 1048



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 180/407 (44%), Gaps = 7/407 (1%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           M   G I E  EIL +M+++   P+   YT ++       +    L+ + ++ +  + A+
Sbjct: 484 MCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVAN 543

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
            + +  L+    + G +    +  + M    I  D A +  +I+     G V +A  +  
Sbjct: 544 SVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYD 603

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           ++V  G+  D+  Y S++ GLC+     +A +     ++   A D  T+N LLV   + G
Sbjct: 604 NMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHG 663

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI- 414
            +D    L  +M  +  ++  D   +   L G  K  +++ AL + + +  KG     I 
Sbjct: 664 TLDEALDLCEKM--VTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIA 721

Query: 415 YNILMGALLEIGEVKKALYLFGKMR-GLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           Y  L+  L+  G+VK A Y+F ++     L  + ++++  +  +++ G I E       +
Sbjct: 722 YTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNM 781

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            E    PS A+YN L  G  K G++   + L RD +      P    Y L I  +C  G 
Sbjct: 782 HENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKE-GIKPDNVTYRLLIFGLCEYGL 840

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
            E  ++ L +M  EG  P+ +    +I    +   +  A ++F+ ++
Sbjct: 841 IEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMK 887



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 174/406 (42%), Gaps = 32/406 (7%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G IAE  +  + M R     DV ++  +I       N+     V++ M +     D+  
Sbjct: 557 EGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICT 616

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +L+ GLC+GG +V+  E    + E    ID      L+ G+   G + +A DL + +V
Sbjct: 617 YGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMV 676

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM- 359
                 D   Y  ++ G C+  +   A  L ++ ++  L PD      LL      G++ 
Sbjct: 677 TRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVK 736

Query: 360 --DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE----ERIMMALDVFEELKGKGYSSVP 413
                F+ +   E L     A       +L G +    ER+M  +      + + Y S  
Sbjct: 737 AASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMH-----ENEVYPSSA 791

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YNILM   ++ G++ + LYL+  M    ++ +++++ + I    E G I  A +   K+
Sbjct: 792 SYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKM 851

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           +     P   A++ L K   +  ++  A+ L              F Y   +      G+
Sbjct: 852 VLEGVFPDNLAFDILIKAFSEKSKMSNALQL--------------FSYMKWV------GD 891

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            +   E+  +M   G  P+EV  S+I+ G+CK G +EEA  VF+++
Sbjct: 892 IDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSI 937



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 161/375 (42%), Gaps = 43/375 (11%)

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           +L+   V EGKV  A   +  + + G++A L   N+I+  L  + + +  +   + ++  
Sbjct: 165 LLVNAYVKEGKVLDAAAAIFFMDECGFKASLFSCNNILNALVGINKSEYVWLFLKESLDR 224

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA 397
               D +T N +L      G++     +L +M+  +   A        + V K+ R   A
Sbjct: 225 KFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMKNCRLPNAVTYNTILNWYV-KKGRCKSA 283

Query: 398 LDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
           L + ++++  G  + +  YNI++  L ++    +A  L  +MR +NL  +  S++  I  
Sbjct: 284 LRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHG 343

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
               G I  A    N+++  S  PSVA Y  L  G C+ G  D A  ++ + +      P
Sbjct: 344 FFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYE-MQITGVRP 402

Query: 517 TEFKYA---------------------------------LTIL--HVCRSGEAEKIIEVL 541
           +E  Y+                                  TIL    C+ GE  K  ++L
Sbjct: 403 SELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQIL 462

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
             M  +G  P+ +  SA+I+GMCK G + E +++ + +++  +L   N ++Y  ++    
Sbjct: 463 KCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVL--PNNVLYTTLVFYFC 520

Query: 602 KKKTADLVLSGLKFF 616
           K   A      LK+F
Sbjct: 521 KAGHAK---EALKYF 532



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/413 (21%), Positives = 176/413 (42%), Gaps = 22/413 (5%)

Query: 182  GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
            G + +  E +  +    C  D      ++  +     LD  L + E+M    +  D   Y
Sbjct: 628  GHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTY 687

Query: 242  VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV- 300
              L+ G CK G+VV    L + M E G++ D   Y  L+ GLV EG+V  A  + ++++ 
Sbjct: 688  TILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIIC 747

Query: 301  DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
              G  AD   YNS++ G  +  Q ++  +L     ++++ P  ++ N L+    + G++ 
Sbjct: 748  KEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLS 807

Query: 361  NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILM 419
                L   M K          +   F + +   I +A+   E++  +G +     ++IL+
Sbjct: 808  RTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILI 867

Query: 420  GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             A  E  ++  AL LF  M+ +                   GDI  A E    +  +  V
Sbjct: 868  KAFSEKSKMSNALQLFSYMKWV-------------------GDIDGAFELKEDMKALGVV 908

Query: 480  PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
            PS  A + + +GLCK G+++ A+++    +      PT   +   +  +C+  + +    
Sbjct: 909  PSEVAESSIVRGLCKCGKVEEAIIVFSSIM-RAGMVPTIATFTTLMHGLCKEFKIDDAFH 967

Query: 540  VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
            +   M   G   + V  + +I+G+C    + +A  ++  ++ + LL    T +
Sbjct: 968  LKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYI 1020



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 87/210 (41%), Gaps = 1/210 (0%)

Query: 134  LASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEK 193
            +A KF      +  +  N A ++ L    S  +    A Q+   M   G I    E+ E 
Sbjct: 843  IAVKFLEKMVLEGVFPDNLA-FDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKED 901

Query: 194  MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
            M+     P   A ++++R L     ++  + V+  + +  +   +  + TL+ GLCK  +
Sbjct: 902  MKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFK 961

Query: 254  VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
            +     L + M+  G+ +D   Y VLI GL  +  +  A DL +++   G   ++  Y +
Sbjct: 962  IDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYIT 1021

Query: 314  IIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
            + G +          KL +      + P +
Sbjct: 1022 LTGAMYATGTMQDGEKLLKDIEDRGIVPSY 1051


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 184/398 (46%), Gaps = 17/398 (4%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           DV +YT +I+ LA  + +D    ++EE+K      +V+AY  +I GL K GR+  G + F
Sbjct: 107 DVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNF 166

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            EM  +  +  R  Y V+I+GL     +  AC + + +V  G   D   Y ++I G  + 
Sbjct: 167 EEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKA 226

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-----EKLKFSV 376
            + D+A KL +V +     P   T   ++    ++  ++   +++AQM     E   F  
Sbjct: 227 SKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIF 286

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
            + L  +     G+ E    A  V  E+  +G +  V +Y  L+  L   G V +A ++F
Sbjct: 287 TSLLSYYLS--KGRAEE---AYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVF 341

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             M       ++L++   IQ   + G++  A E    + +    P   AYN L  G  K+
Sbjct: 342 DSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKL 401

Query: 496 GEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQ-EGCPPN 552
             +D A   V D +  VASG  P    + + +  + + G+ ++   +  EM + E  PP 
Sbjct: 402 ERVDQAFG-VYDRM--VASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPT 458

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            V  + +I G+ K G + EA   F  + +R ++ E +T
Sbjct: 459 LVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHT 496



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 177/404 (43%), Gaps = 2/404 (0%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           L DS+ RI E  E+ E+++   C P+V AYTA+I  L     ++  L+ +EEM       
Sbjct: 118 LADSK-RIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVP 176

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
               Y  +I GLCK   +    ++F +M + G + D   Y  LI+G     K+ +A  LL
Sbjct: 177 TRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLL 236

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             ++  G       Y SI+ G C++   ++A ++     +    P       LL      
Sbjct: 237 DVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSK 296

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-Y 415
           GR +  +++L +M     +    L      L+    R+  A  VF+ +  KG +   + Y
Sbjct: 297 GRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTY 356

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             ++    +IG V+ A  +   M    +  +  +++  +  +V+   + +A   +++++ 
Sbjct: 357 GTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVA 416

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P+   +N L  GL K G+ D A  L ++ L      PT   Y + I  + ++G   
Sbjct: 417 SGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVS 476

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           +      EM   G  P     +++I  + K G + EA+K+  ++
Sbjct: 477 EAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDM 520



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 178/405 (43%), Gaps = 14/405 (3%)

Query: 185 AEML----EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           A+ML    ++ E+M +  C PD   YT +I   +    +D   ++ + M     E   + 
Sbjct: 191 AQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVT 250

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +++ G CK   +    E+  +M+E G      I+  L+   + +G+  +A  +L ++ 
Sbjct: 251 YGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMT 310

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D+ +Y S+I  L    +  +A  +F+  ++   APD  T   ++   +++G ++
Sbjct: 311 ARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVE 370

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNI 417
              ++L  M K    V  D   +   + G  K ER+  A  V++ +   G     + +N+
Sbjct: 371 AAGEILELMAKS--GVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNV 428

Query: 418 LMGALLEIGEVKKALYLFGKM-RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           LM  L + G+  +A  LF +M     +    +S++I I    ++G + EA     ++I+ 
Sbjct: 429 LMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDR 488

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
             +P    Y  L   L K G I  A  LV D +  +   P    Y+  I  +  S   + 
Sbjct: 489 GIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMV-KLGVNPDVQAYSALITGLIDSSMVDT 547

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHG---TLEEARKVFTN 578
             +V  EM + GC PNEV    +  G    G    LE  ++ F+ 
Sbjct: 548 AWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALDLEAVKQHFSQ 592



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 103/461 (22%), Positives = 187/461 (40%), Gaps = 45/461 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL-------AAERNLDACLRVWE----- 227
           S  ++ E  +    M  N C+PDV A+T +I             + L+  L+ +      
Sbjct: 19  SIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLNQALKRFRPDVFL 78

Query: 228 ------------EMKKDLVEA-------DVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
                       ++      A       DV++Y T+I GL    R+    ELF E+K  G
Sbjct: 79  YTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRIDEACELFEELKTAG 138

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
              +   Y  +I+GL+  G++       +++  S        Y  +I GLC+ +    A 
Sbjct: 139 CSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDAC 198

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-----EKLKFSVAADLEKF 383
           K+FE  VQ    PD  T   L+   ++  +MD   KLL  M     E    +  + +  F
Sbjct: 199 KVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGF 258

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                 K + I  A +V  +++ +G    + I+  L+   L  G  ++A  +  +M    
Sbjct: 259 C-----KLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARG 313

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
              + + ++  I     +G + EA    + +IE    P    Y  + +   KIG ++AA 
Sbjct: 314 CAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAG 373

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            ++ + +     GP  F Y   +    +    ++   V + M   G  PN V  + ++ G
Sbjct: 374 EIL-ELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHG 432

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           + K G  + A  +F  + E++ +    T+V   ILI+ + K
Sbjct: 433 LFKDGKTDRAFSLFKEMLEKEEVPP--TLVSYTILIDGLGK 471



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 5/236 (2%)

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
           +L+ S GR+ E   + + M    C PD   Y  +I+  +   N++A   + E M K  V 
Sbjct: 326 DLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVG 385

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            D  AY +L+ G  K  RV +   ++  M  +GI  +   + VL+ GL  +GK  +A  L
Sbjct: 386 PDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSL 445

Query: 296 LKDLVD-SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
            K++++       L  Y  +I GL +  +  +A+  F+  +   + P+  T   L+   A
Sbjct: 446 FKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLA 505

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKG 408
           + GR+    KL+  M KL   V  D++ +   + G  +  M+  A DVF+E+  +G
Sbjct: 506 KAGRIPEAKKLVEDMVKL--GVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRG 559



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 20/162 (12%)

Query: 147 GYKHNFASYNALAYCLSRN-------NLFRA---ADQVPELMDS----------QGRIAE 186
           G K N  ++N L + L ++       +LF+     ++VP  + S           GR++E
Sbjct: 418 GIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSE 477

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
                ++M      P+   YT++I  LA    +    ++ E+M K  V  DV AY  LI 
Sbjct: 478 AFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALIT 537

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           GL     V    ++F+EM + G   +   Y VL  G    G+
Sbjct: 538 GLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGR 579


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/449 (23%), Positives = 196/449 (43%), Gaps = 44/449 (9%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+  ++  +I+ L   R +D  + V+  M +     D   Y TL+ GLCK  R+     L
Sbjct: 185 PNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLL 244

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             EM+  G      IY VLI+GL  +G + +   L+ ++   G   +   YN++I GLC 
Sbjct: 245 LDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCL 304

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             + DKA  L E  V     P+  T   L+    +  R  +  +LL+ ME+  + +   +
Sbjct: 305 KGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHI 364

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKG-------YS----------------------- 410
                  + KE +   A+ ++ ++  KG       YS                       
Sbjct: 365 YSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMI 424

Query: 411 ------SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
                 +   Y+ LM    + G  ++A+ ++ +M       N   +S+ I      G + 
Sbjct: 425 ASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVK 484

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYA 522
           EA    +K++ +   P   AY+ + KGLC IG +DAA+ L  +  C     S P    Y 
Sbjct: 485 EAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYN 544

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC-KHGTLEEAR----KVFT 577
           + +  +C   +  + +++LN M   GC P+ + C+  ++ +  K  + ++ R    ++  
Sbjct: 545 ILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVV 604

Query: 578 NLRERKLLTEANTIVYDEILIEHMKKKTA 606
            L +R+ ++ A TIV + +L +++  KT+
Sbjct: 605 RLLKRQRVSGACTIV-EVMLGKYLAPKTS 632



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 19/209 (9%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           +KG K N   Y+ L   L R                +G+  E  EIL +M  + C P+ +
Sbjct: 390 EKGCKPNIVVYSVLVDGLCR----------------EGKPNEAKEILNRMIASGCLPNAY 433

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y+++++        +  ++VW+EM K     +   Y  LI GLC  GRV     ++ +M
Sbjct: 434 TYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKM 493

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV---DSGYRADLGIYNSIIGGLCRV 321
              GI  D   Y  +I+GL G G +  A  L  +++   +   + D+  YN ++ GLC  
Sbjct: 494 LTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQ 553

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           K   +A  L    +     PD  T N  L
Sbjct: 554 KDISRAVDLLNSMLDRGCDPDVITCNTFL 582



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 155/335 (46%), Gaps = 16/335 (4%)

Query: 266 ENGILIDRAIYGVLIEGLVGEGKV-GKACDLLKDLVDSGYRADLGI--YNSIIGGLCRVK 322
           EN ++I+R+   +++    G+  +  KA DL   +VD  +R    +  +NS++  +    
Sbjct: 106 ENRVIIERSF--IVVFRAYGKAHLPDKAVDLFHRMVDE-FRCKRSVKSFNSVLNVIINEG 162

Query: 323 QFDKAYKLFEVTVQDDL----APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
            + +  + ++  V  ++    +P+  + N ++    ++  +D   ++   M + K     
Sbjct: 163 LYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERK--CLP 220

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKKALYLF 435
           D   +   + G  KEERI  A+ + +E++ +G S  P IYN+L+  L + G++ +   L 
Sbjct: 221 DGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLV 280

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             M       N ++++  I      G + +A     +++    +P+   Y  L  GL K 
Sbjct: 281 DNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQ 340

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
                A+ L+   +        +  Y++ I  + + G+AE+ + +  +M ++GC PN V+
Sbjct: 341 RRATDAVRLLSS-MEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVV 399

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            S ++ G+C+ G   EA+++   +     L  A T
Sbjct: 400 YSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYT 434


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 174/374 (46%), Gaps = 6/374 (1%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +  +G   + L +L  M +   KPDV  Y+ +I  L  + NLDA + +  EMK+  +  +
Sbjct: 178 LSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPN 237

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           +  Y +LI GLCK G+  +   L  EM    I  +   + +LI+GL  EGKV  A ++++
Sbjct: 238 IFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMR 297

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            +++ G   D+  Y++I+ G C   Q D+A ++F V     + P+  + + L+    +  
Sbjct: 298 HMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKK 357

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGYS-SVPI 414
            +    +L  ++ +    +  D   +   L G  E  RI  A  +F+E+   G +  + +
Sbjct: 358 NLAKAMQLFGEISQK--GLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICL 415

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           ++ L+    + G V++A+ LF K+     + N   +++ I    ++  + EA     K+ 
Sbjct: 416 HSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLP 475

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
            +  +P V  YN +  G C+ G  D    ++R    N         Y + +    RS + 
Sbjct: 476 SIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDN-GCPANNITYNVIMQGFFRSNKI 534

Query: 535 EKIIEVLNEMTQEG 548
            +I+  + EM   G
Sbjct: 535 SEIVSFMKEMAGRG 548



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 197/417 (47%), Gaps = 9/417 (2%)

Query: 202 DVFAYTAMIRVLAAERNL-DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           +V  +  ++  L AE  + DA +   + +++ + E + + Y T++ GL K G   +   L
Sbjct: 131 NVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSL 190

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
            R M++     D   Y ++I+ L  +  +  A +LL ++       ++  YNS+I GLC+
Sbjct: 191 LRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCK 250

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           + Q++K   L    V  ++ P+  T + L+    + G++++  +++  M  ++  V  D+
Sbjct: 251 LGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHM--IEKGVEPDI 308

Query: 381 EKFFEFLVGKEER--IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             +   + G   R  +  A  VF  L+ KG   ++  Y+IL+    +   + KA+ LFG+
Sbjct: 309 ITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGE 368

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           +    L+ +++++S  +   +E G I +A +  ++++ +   P +  ++ L  G  K G 
Sbjct: 369 ISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGL 428

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           ++ AM+L      N       F Y + I  +C++    +   +  ++   G  P+    +
Sbjct: 429 VEEAMLLFSKLERNREDTNISF-YTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYN 487

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK 614
            +I+G C+ G  +E + +   + +      AN I Y+ I+    +      ++S +K
Sbjct: 488 VMITGFCREGLFDEVKGILRKMEDNG--CPANNITYNVIMQGFFRSNKISEIVSFMK 542



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 154/327 (47%), Gaps = 17/327 (5%)

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            LFREM+  GI I  +I  ++        ++  A  +L   + +G   ++  +N+++GGL
Sbjct: 83  SLFREMRILGIPISDSILNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGL 142

Query: 319 CRVKQFDKAYKLFEVTVQDDLA-PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK------ 371
               +   A  LF+  V++ +  P+      ++   ++ G  +    LL  ME+      
Sbjct: 143 FAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPD 202

Query: 372 -LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVK 429
              +S+  D        + K+  +  A+++  E+K K    ++  YN L+  L ++G+ +
Sbjct: 203 VRTYSIVID-------ALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWE 255

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
           K   L  +M  LN+  N  +FSI I    + G + +A E    +IE    P +  Y+ + 
Sbjct: 256 KVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIM 315

Query: 490 KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
            G C  G++D A   V + L +    P  F Y++ I   C+     K +++  E++Q+G 
Sbjct: 316 DGYCLRGQVDRARR-VFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGL 374

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVF 576
            P+ V  S I+ G+ + G + +A+K+F
Sbjct: 375 KPDTVTYSTILHGLIEVGRIGDAKKIF 401



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 99/227 (43%), Gaps = 21/227 (9%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPEL------------------MDSQGR 183
           + KG K N  SY+ L   YC  + NL +A     E+                  +   GR
Sbjct: 335 RDKGIKPNIFSYSILINGYC-KKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGR 393

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           I +  +I ++M R    PD+  ++ ++        ++  + ++ +++++  + ++  Y  
Sbjct: 394 IGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTV 453

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I GLCK  RV   H +F ++   G++ D   Y V+I G   EG   +   +L+ + D+G
Sbjct: 454 VINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNG 513

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
             A+   YN I+ G  R  +  +     +       + D +T   L+
Sbjct: 514 CPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLI 560


>gi|255661022|gb|ACU25680.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 376

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 162/358 (45%), Gaps = 13/358 (3%)

Query: 153 ASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRV 212
            S +A+ Y    N  FR            GRI +  E+ E M R   + +V ++  M+R 
Sbjct: 21  VSPDAVVYNTMLNGFFRV-----------GRIKDCFELWELMGREGSR-NVASFNIMMRG 68

Query: 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           L     +D  + +WE MK      D + Y  L+ G CK   + +   +    +  G ++D
Sbjct: 69  LFDNGEVDEVISIWELMKNSGFVEDSITYGILVHGFCKNEYINKSLHVLEMAERKGGVLD 128

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              Y  +I GL  E K+ KA  +L  ++ SG +    +YN++I GL    +F+ A+++F 
Sbjct: 129 AFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPKAHVYNALINGLVGASKFEDAFRVFH 188

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392
                  +P   T N L+    +  R    + L+ +M +  ++ +          +    
Sbjct: 189 EMGTTHCSPTIVTYNTLINGLCKGERFGEAYDLVKEMLEKGWNSSVITYSLLIKGLCLGH 248

Query: 393 RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
           ++ MAL ++ ++  KG+   V ++NIL+  L  +G+++ AL L+  +   N   N ++ +
Sbjct: 249 KVEMALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDINHWNCAPNLVTHN 308

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
             ++   + GDI  A     +I+     P + +YN   KGLC    I  +++ + D L
Sbjct: 309 TLMEGFYKDGDIRNALVIWARILRNGLQPDIISYNITLKGLCSCNRISDSILFLHDAL 366



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 106/245 (43%), Gaps = 19/245 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RI 184
           K  G+  +  +Y  L +   +N     +  V E+ + +G                   ++
Sbjct: 86  KNSGFVEDSITYGILVHGFCKNEYINKSLHVLEMAERKGGVLDAFAYSAMINGLCKEAKL 145

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            + + +L  M ++ CKP    Y A+I  L      +   RV+ EM        ++ Y TL
Sbjct: 146 DKAVSVLNGMIKSGCKPKAHVYNALINGLVGASKFEDAFRVFHEMGTTHCSPTIVTYNTL 205

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLCKG R    ++L +EM E G       Y +LI+GL    KV  A  L   +   G+
Sbjct: 206 INGLCKGERFGEAYDLVKEMLEKGWNSSVITYSLLIKGLCLGHKVEMALQLWNQVTSKGF 265

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           + D+ ++N +I GLC V +   A  L+      + AP+  T N L+    + G + N   
Sbjct: 266 KPDVQMHNILIHGLCSVGKMQLALSLYFDINHWNCAPNLVTHNTLMEGFYKDGDIRNALV 325

Query: 365 LLAQM 369
           + A++
Sbjct: 326 IWARI 330



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           +YN ++     +G +K    L+ ++ G     N  SF+I ++   ++G++ E       +
Sbjct: 27  VYNTMLNGFFRVGRIKDCFELW-ELMGREGSRNVASFNIMMRGLFDNGEVDEVISIWELM 85

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE-FKYALTILHVCRSG 532
                V     Y  L  G CK   I+ ++ ++   +     G  + F Y+  I  +C+  
Sbjct: 86  KNSGFVEDSITYGILVHGFCKNEYINKSLHVLE--MAERKGGVLDAFAYSAMINGLCKEA 143

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           + +K + VLN M + GC P   + +A+I+G+      E+A +VF
Sbjct: 144 KLDKAVSVLNGMIKSGCKPKAHVYNALINGLVGASKFEDAFRVF 187



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/265 (19%), Positives = 110/265 (41%), Gaps = 3/265 (1%)

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C     D A ++++  V+  ++PD    N +L     +GR+ + F+L   M +      A
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNTMLNGFFRVGRIKDCFELWELMGREGSRNVA 60

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGK 437
                   L    E +   + ++E +K  G+    I Y IL+    +   + K+L++   
Sbjct: 61  SFNIMMRGLFDNGE-VDEVISIWELMKNSGFVEDSITYGILVHGFCKNEYINKSLHVLEM 119

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
                  +++ ++S  I    +   + +A    N +I+    P    YN L  GL    +
Sbjct: 120 AERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPKAHVYNALINGLVGASK 179

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
            + A  +  + +G     PT   Y   I  +C+     +  +++ EM ++G   + +  S
Sbjct: 180 FEDAFRVFHE-MGTTHCSPTIVTYNTLINGLCKGERFGEAYDLVKEMLEKGWNSSVITYS 238

Query: 558 AIISGMCKHGTLEEARKVFTNLRER 582
            +I G+C    +E A +++  +  +
Sbjct: 239 LLIKGLCLGHKVEMALQLWNQVTSK 263



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/163 (19%), Positives = 69/163 (42%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  E  +++++M        V  Y+ +I+ L     ++  L++W ++     + DV  + 
Sbjct: 214 RFGEAYDLVKEMLEKGWNSSVITYSLLIKGLCLGHKVEMALQLWNQVTSKGFKPDVQMHN 273

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI GLC  G++     L+ ++       +   +  L+EG   +G +  A  +   ++ +
Sbjct: 274 ILIHGLCSVGKMQLALSLYFDINHWNCAPNLVTHNTLMEGFYKDGDIRNALVIWARILRN 333

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           G + D+  YN  + GLC   +   +       +   + P   T
Sbjct: 334 GLQPDIISYNITLKGLCSCNRISDSILFLHDALTKKIVPTIIT 376



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 11/129 (8%)

Query: 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM----MLVRDCLGNVAS 514
           ESGDI  A   + +I+E    P    YN +  G  ++G I        ++ R+   NVAS
Sbjct: 2   ESGDIDGAERVYKEIVESKVSPDAVVYNTMLNGFFRVGRIKDCFELWELMGREGSRNVAS 61

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
                 + + +  +  +GE +++I +   M   G   + +    ++ G CK+  + ++  
Sbjct: 62  ------FNIMMRGLFDNGEVDEVISIWELMKNSGFVEDSITYGILVHGFCKNEYINKSLH 115

Query: 575 VFTNLRERK 583
           V   + ERK
Sbjct: 116 VL-EMAERK 123


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 180/420 (42%), Gaps = 57/420 (13%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  +  +++++M R    PD   Y+ +I  L     ++    +++EMK   V  DV  Y
Sbjct: 202 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 261

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI   CK G + +   LF EM+  G       Y  LI   +   +V +A D+   +VD
Sbjct: 262 TILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVD 321

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G R +   Y +++ GLC+     KA++++                              
Sbjct: 322 AGCRPNDVTYGALVDGLCKAGNISKAFEVYA----------------------------- 352

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
             KL+        S +AD + +F      E+R  +A             +V  Y  L+  
Sbjct: 353 --KLIGT------SDSADSDFYFPC----EDRHTLA------------PNVVTYGALVDG 388

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           L +  +V  A  L   M     E N + +   I    ++G I  A E   ++ +   +PS
Sbjct: 389 LCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPS 448

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V  Y  L   + K G +D AM ++   L +  + P    Y   I  +CR GE+EK +++L
Sbjct: 449 VHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT-PNVVTYTAMIDGLCRIGESEKALKLL 507

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
           + M ++GC PN V  +A+I G+ K G ++ +  +FT +  +      N + Y  +LI H+
Sbjct: 508 SLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG--CSPNYVTY-RVLINHL 564



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/456 (22%), Positives = 195/456 (42%), Gaps = 29/456 (6%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR A+ L+++E   R   K D    T MI  L      D  +     M+ +    +V+ 
Sbjct: 23  EGRWADALDMIE---REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVT 79

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TL+ G  K  ++     +   M   G   + +++  L+     E     A  LL  + 
Sbjct: 80  YRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMT 139

Query: 301 DSGYRADLGIYNSIIGGLCRVKQ------FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
             G      +YN  IG +C  ++       D A K++   +  +   +   V     C  
Sbjct: 140 TCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLC 199

Query: 355 EMGRMDNFFKLLAQMEKLKF-SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SV 412
            +G+ D  F+L+ +M +  F    +   K   FL     ++  A  +F+E+K  G +  V
Sbjct: 200 GVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLC-HATKVEKAFLLFQEMKMVGVTPDV 258

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             Y IL+ +  + G +++A +LF +MR +      ++++  I  ++++  + +A +  ++
Sbjct: 259 YTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHR 318

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF------------- 519
           +++    P+   Y  L  GLCK G I  A  +    +G   S  ++F             
Sbjct: 319 MVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPN 378

Query: 520 --KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
              Y   +  +C++ + +   E+L+ M   GC PN ++  A+I G CK G ++ A++VF 
Sbjct: 379 VVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFL 438

Query: 578 NLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
            + +   L   +T  Y  ++    K    DL +  L
Sbjct: 439 QMTKCGYLPSVHT--YTSLIDRMFKDGRLDLAMKVL 472



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 202/489 (41%), Gaps = 48/489 (9%)

Query: 113 KLRRVTPDLVAEVLKVENNPTLA----SKFFHWAGKQKGYKHNFASYNALAYCLSRNNLF 168
           K+  VTPD+    + +++         +++     +  G      +Y AL +       +
Sbjct: 250 KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIH------AY 303

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
             A QVP+  D          I  +M    C+P+   Y A++  L    N+     V+ +
Sbjct: 304 LKAKQVPQAND----------IFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAK 353

Query: 229 M--KKDLVEAD--------------VMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           +    D  ++D              V+ Y  L+ GLCK  +V   HEL   M  +G   +
Sbjct: 354 LIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPN 413

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
             +Y  LI+G    GK+  A ++   +   GY   +  Y S+I  + +  + D A K+  
Sbjct: 414 HIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLS 473

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392
             ++D   P+  T   ++     +G  +   KLL+ ME+   S            +GK  
Sbjct: 474 QMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAG 533

Query: 393 RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
           +I ++LD+F ++  KG S +   Y +L+  L   G + KA  L G+M+          + 
Sbjct: 534 KIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYR 593

Query: 452 IAIQ----CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
            AIQ      + S  ILE  E +        VP    Y  L     K G ++ AM L ++
Sbjct: 594 CAIQGFSKSFIASLGILEEMESYG------TVPIAPVYGMLIDCFSKAGRLEIAMELHKE 647

Query: 508 CLGNVASGPTEFK-YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
            +   +S  T+   YA  I  +C + + E+   + +EMT+ G  P   +   +I G+ + 
Sbjct: 648 MMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEV 707

Query: 567 GTLEEARKV 575
              +EA ++
Sbjct: 708 KKWDEALQL 716



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 100/444 (22%), Positives = 193/444 (43%), Gaps = 37/444 (8%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L+DS    G I +   + E+MR   C P V  YTA+I      + +     ++  M    
Sbjct: 264 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 323

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREM----------------KENGILIDRAIYG 277
              + + Y  L+ GLCK G + +  E++ ++                  + +  +   YG
Sbjct: 324 CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYG 383

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
            L++GL    KV  A +LL  ++ SG   +  +Y+++I G C+  + D A ++F    + 
Sbjct: 384 ALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKC 443

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL-----VGKEE 392
              P   T   L+    + GR+D   K+L+QM  LK S   ++  +   +     +G+ E
Sbjct: 444 GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQM--LKDSCTPNVVTYTAMIDGLCRIGESE 501

Query: 393 RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
           + +  L + EE   KG S +V  Y  L+  L + G++  +L LF +M       N +++ 
Sbjct: 502 KALKLLSLMEE---KGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYR 558

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPS-VAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           + I  H+ +  +L+        ++ +  P  +  Y C  +G  K       ++   +  G
Sbjct: 559 VLIN-HLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYG 617

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ--EGCPPNEVICSAIISGMCKHGT 568
            V   P    Y + I    ++G  E  +E+  EM +       +  + +++I  +C    
Sbjct: 618 TVPIAPV---YGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQ 674

Query: 569 LEEARKVFTNLRERKLLTEANTIV 592
           +EEA ++++ +  R  + E +  V
Sbjct: 675 VEEAFRLYSEMTRRGFVPELSVFV 698



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK--DLVEADVMAYVTLI 245
           L ILE+M      P    Y  +I   +    L+  + + +EM +    V+ D   Y +LI
Sbjct: 607 LGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLI 666

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
             LC   +V     L+ EM   G + + +++  LI+GLV   K  +A  L   +   G
Sbjct: 667 QALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEG 724


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 204/455 (44%), Gaps = 23/455 (5%)

Query: 144 KQKGYKHNFASYNALAYCL-SRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           K +G   N A++  +   L +R +L +A        +   R+ E +E           PD
Sbjct: 56  KARGITSNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIE----------APD 105

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
              YTA++  L    N DA L  +E+M     E  ++ Y  L+ GLCK  +V R  ++F 
Sbjct: 106 SVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFE 165

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EM   G   D   Y  LI+GL   G+V +A  L+  ++  G       Y SI+ GLC+  
Sbjct: 166 EMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCG 225

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           +  +A K  +   +  L P   T + ++     MG+++  F ++ +M       A D   
Sbjct: 226 RIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADR--DCAPDTIS 283

Query: 383 FFEFL-----VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
           +  F+     +G+ E    A  VFE +  KG    +  Y I++    + G +  A ++  
Sbjct: 284 YTMFIEALYSIGRREE---AEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLR 340

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            M    ++ N   +++ +   V+S  + EA E + +I++   +PS   YN +   LCK+ 
Sbjct: 341 LMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLK 400

Query: 497 EIDAAMMLVRDCLGNVAS-GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           ++D A+ L+R+         P+   Y++ I  + + G  E+  ++L EM   G  P+   
Sbjct: 401 KMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFT 460

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            +++I  +   G +  A ++   + +  +  + +T
Sbjct: 461 YTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHT 495



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/415 (20%), Positives = 180/415 (43%), Gaps = 42/415 (10%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD---LVEA----DVMAYV 242
           +L +M+      +   +  ++  L A R+LD  +  +    ++   L EA    D + Y 
Sbjct: 51  LLREMKARGITSNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYT 110

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++ GL K G    G E + +M  +        Y VL++GL    KV +ACD+ ++++  
Sbjct: 111 AIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRK 170

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G++ D+  Y+S+I GL +  + D+A KL ++ +     P       ++    + GR+   
Sbjct: 171 GHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEA 230

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422
            K + +M + +     D                                   Y+ ++   
Sbjct: 231 VKTIQEMRRRRLRPRVD----------------------------------TYSFIVTGY 256

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
           + +G+V++A  +  +M   +   +++S+++ I+     G   EA +    ++E    P +
Sbjct: 257 IGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDM 316

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             Y  +    CK G + AA  ++R  +   A  P  + Y + +    +S   E+ +E+  
Sbjct: 317 HTYGIIIDNFCKEGSMAAATHVLR-LMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQ 375

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            + ++G  P+ V  + +I+ +CK   ++EA ++   ++ RK   E + + Y  I+
Sbjct: 376 RILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMII 430



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 174/396 (43%), Gaps = 53/396 (13%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
           +KG+K +  +Y++L   LS+      A ++ +LM ++G                   RI 
Sbjct: 169 RKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQ 228

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E ++ +++MRR   +P V  Y+ ++        ++    V EEM       D ++Y   I
Sbjct: 229 EAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFI 288

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
             L   GR     ++F  M E G   D   YG++I+    EG +  A  +L+ +  +  +
Sbjct: 289 EALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVK 348

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            +  IY  I+ G  +  + ++A +L++  ++D + P   T N ++    ++ +MD   +L
Sbjct: 349 PNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALEL 408

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEI 425
           L +M++ K                            EEL+     S+  Y++++  L ++
Sbjct: 409 LREMQRRK----------------------------EELE----PSIVTYSMIIHGLGKV 436

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G  ++A  L  +M    +  +  +++  IQ    +G +  A E   ++++    P    Y
Sbjct: 437 GMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTY 496

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
             L + LC+  ++DAA  L+++ + N    P EF +
Sbjct: 497 GTLVQILCR-SDVDAAWDLLQEMMRN-GHTPNEFTF 530


>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 565

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 124/485 (25%), Positives = 202/485 (41%), Gaps = 94/485 (19%)

Query: 105 PQVVTELSKL-RRVTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCL 162
           P+V   L  L   V+P LVAEVLK + N   LA  FF WA +Q+G+ +   S++ L   L
Sbjct: 130 PRVPAALDALGASVSPQLVAEVLKNLSNAGILALAFFRWAERQQGFVYTADSFHNLIEAL 189

Query: 163 SRNNLFRAADQVPELMDSQGRIAEMLEILEKMR-RNLCKPDVFAYTAMIRVLAAERNLDA 221
            +   FR                 +  ++E MR R L   D F    ++R  A  R +  
Sbjct: 190 GKIKQFRL----------------VWSLVEAMRCRGLLSKDTFRL--IVRRYARARKVKE 231

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI-DRAIYGVLI 280
            +  +E+M    ++AD+  Y  LI  L K  +V + H +F+EMK NG  + D   Y VL+
Sbjct: 232 AVETFEKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLM 291

Query: 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
           EG   E  +     + ++++D+G + D+  Y  +I   C+  + D+A K+F     +   
Sbjct: 292 EGWGHEKDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFREMETNGCM 351

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400
           P     +P + C    G                              +G EER+  AL  
Sbjct: 352 P-----SPHVYCMLING------------------------------LGSEERLDEALKY 376

Query: 401 FEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           FE  K  G+   VP  N ++GA     + + A  +  +MR   +  NS ++ I +   ++
Sbjct: 377 FELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKSGIGPNSRTYDIILHHLIK 436

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           S  I E                  AYN   +G+ K G                   P   
Sbjct: 437 SQKIEE------------------AYNVF-QGMSKDG-----------------CEPQLN 460

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            Y + +   C +   +  ++V N+M ++G  P   + SA+I+G+C    LEEA   F  +
Sbjct: 461 TYTMMVGMFCSNERVDVALKVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACAYFQEM 520

Query: 580 RERKL 584
            +R +
Sbjct: 521 LDRGI 525



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 152/368 (41%), Gaps = 52/368 (14%)

Query: 226 WEEMKKDLV-EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
           W E ++  V  AD    +   +G  K  R+V    L   M+  G+L  +  + +++    
Sbjct: 168 WAERQQGFVYTADSFHNLIEALGKIKQFRLV--WSLVEAMRCRGLL-SKDTFRLIVRRYA 224

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDF 343
              KV +A +  + +   G +ADL  YN +I  L + KQ  KA+ +F E+       PD 
Sbjct: 225 RARKVKEAVETFEKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDL 284

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE 403
            T   L         M+ +                          G E+ ++M   V++E
Sbjct: 285 KTYTVL---------MEGW--------------------------GHEKDLLMLKSVYQE 309

Query: 404 LKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG- 461
           +   G    V  Y +L+ +  + G+  +A+ +F +M     E N    S  + C + +G 
Sbjct: 310 MLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFREM-----ETNGCMPSPHVYCMLINGL 364

Query: 462 ---DILEACECHNKIIEMSQVP-SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
              + L+    + ++ + S  P  V   N +    C+  +   A  +V D +     GP 
Sbjct: 365 GSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMV-DEMRKSGIGPN 423

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
              Y + + H+ +S + E+   V   M+++GC P     + ++   C +  ++ A KV+ 
Sbjct: 424 SRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQLNTYTMMVGMFCSNERVDVALKVWN 483

Query: 578 NLRERKLL 585
            ++E+ +L
Sbjct: 484 QMKEKGVL 491



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 99/238 (41%), Gaps = 36/238 (15%)

Query: 389 GKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS 447
            +  ++  A++ FE++ G G  + +  YN L+  L +  +VKKA  +F +M+     V  
Sbjct: 224 ARARKVKEAVETFEKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPD 283

Query: 448 L-SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           L ++++ ++      D+L     + ++++    P V AY  L    CK G+ D A+ + R
Sbjct: 284 LKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFR 343

Query: 507 DCLGN--------------------------------VASG-PTEFKYALTILHV-CRSG 532
           +   N                                 ASG P E      ++   CRS 
Sbjct: 344 EMETNGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSS 403

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           + +   ++++EM + G  PN      I+  + K   +EEA  VF  + +     + NT
Sbjct: 404 KFQHAFKMVDEMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQLNT 461


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 182/422 (43%), Gaps = 10/422 (2%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD + YT +IR L     +   L + ++M +   +  V+ Y  L+  +CK     +  ++
Sbjct: 135 PDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKV 194

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             EM+  G   +   Y V+I G+  E +V  A  +L  L   G++ D   Y +++ GLC 
Sbjct: 195 LDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCA 254

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            K+++    LF   V+++  P+  T + L+      G ++   ++L +M +   +    L
Sbjct: 255 AKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTL 314

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMR 439
                  + K+ R+  A +    +   G S   I Y  ++  L   G  + A  L  +M 
Sbjct: 315 CNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMV 374

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
             N   N ++F+  I    + G I +A     ++ E      +  YN L  G C  G +D
Sbjct: 375 RKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVD 434

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           +A+ L      ++   P    Y   +  +C +   +   E+L EM Q  CP N V  + +
Sbjct: 435 SALEL----FNSLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVL 490

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL---IEHMKKKTADLVLSGLKFF 616
           +S  C+ G +EEA ++   + E       N I ++ +L    E    + A  +L GL   
Sbjct: 491 VSFFCQKGFVEEAIELVQQMMEHG--CTPNLITFNTLLDGITEDCNSEEALELLHGLVSK 548

Query: 617 GL 618
           G+
Sbjct: 549 GI 550



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/484 (21%), Positives = 211/484 (43%), Gaps = 30/484 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           + KG   N  +YN +   + R                + R+ +  +IL ++     +PD 
Sbjct: 199 RAKGCTPNIVTYNVIINGMCR----------------EDRVDDARQILNRLSSYGFQPDT 242

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            +YT +++ L A +  +    ++ EM ++    + + +  L+   C+GG V R  E+   
Sbjct: 243 VSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDR 302

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M E+G   +  +  ++I  +  +G+V  A + L ++   G   D   Y +++ GLCR  +
Sbjct: 303 MSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGR 362

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           ++ A +L    V+ +  P+  T N  +    + G +D    L+ QM +   SV       
Sbjct: 363 WEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNA 422

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
                  + R+  AL++F  L  +   +   Y  L+  L     +  A  L  +M   + 
Sbjct: 423 LVNGFCVQGRVDSALELFNSLPCE--PNTITYTTLLTGLCHAERLDAAAELLAEMMQNDC 480

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
            +N ++F++ +    + G + EA E   +++E    P++  +N L  G+ +    + A+ 
Sbjct: 481 PLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALE 540

Query: 504 LVRDCLGNVASGPT--EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
           L+    G V+ G +     Y+  +  + R    E+ +++ + +   G  P  V+ + I+S
Sbjct: 541 LLH---GLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILS 597

Query: 562 GMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK----KTADLVLSGLKFFG 617
            +CK    + A   F ++     +   +T V   ILIE + +    K A  VLS L   G
Sbjct: 598 ALCKRCETDRAIDFFAHMVSNSCMPNESTYV---ILIEGLAREGLLKEARYVLSELCSRG 654

Query: 618 LESK 621
           + SK
Sbjct: 655 VLSK 658



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 157/392 (40%), Gaps = 44/392 (11%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           +AE   ++E+       PDV+  T +IR L          RV    +      DV AY T
Sbjct: 51  LAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNT 110

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+ G C+ GR+     L   M    +  D   Y  LI GL   G+VG A  LL D++   
Sbjct: 111 LVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRE 167

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDN 361
            +  +  Y  ++  +C+   F +A K+ +        P+  T N ++  +C         
Sbjct: 168 CQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMC--------- 218

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
                                       +E+R+  A  +   L   G+    + Y  ++ 
Sbjct: 219 ----------------------------REDRVDDARQILNRLSSYGFQPDTVSYTTVLK 250

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L      +    LF +M   N   N ++F + ++     G +  A E  +++ E     
Sbjct: 251 GLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTA 310

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +    N +   +CK G +D A   + + +G+    P    Y   +  +CR+G  E   E+
Sbjct: 311 NTTLCNIVINSICKQGRVDDAFEFLNN-MGSYGCSPDTISYTTVLKGLCRAGRWEDAKEL 369

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           LNEM ++ CPPNEV  +  I  +C+ G +++A
Sbjct: 370 LNEMVRKNCPPNEVTFNTFICILCQKGLIDQA 401



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/425 (20%), Positives = 184/425 (43%), Gaps = 21/425 (4%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ + L +L+ M R  C+P V  YT ++  +         ++V +EM+      +++ 
Sbjct: 150 RGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVT 209

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G+C+  RV    ++   +   G   D   Y  +++GL    +      L  ++V
Sbjct: 210 YNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMV 269

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           ++    +   ++ ++   CR    ++A ++ +   +     + +  N ++    + GR+D
Sbjct: 270 ENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVD 329

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNI 417
           + F+ L  M    +  + D   +   L G  +  R   A ++  E+  K      + +N 
Sbjct: 330 DAFEFLNNMG--SYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNT 387

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
            +  L + G + +A+ L  +M      V  ++++  +      G +  A E  N    + 
Sbjct: 388 FICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNS---LP 444

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSG 532
             P+   Y  L  GLC    +DAA      M+  DC  NV +      + + +   C+ G
Sbjct: 445 CEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVT------FNVLVSFFCQKG 498

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
             E+ IE++ +M + GC PN +  + ++ G+ +    EEA ++   L  + +    +TI 
Sbjct: 499 FVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGI--SLDTIT 556

Query: 593 YDEIL 597
           Y  I+
Sbjct: 557 YSSIV 561


>gi|414868427|tpg|DAA46984.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
          Length = 674

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 124/541 (22%), Positives = 230/541 (42%), Gaps = 71/541 (13%)

Query: 103 WGPQVVTELSK-LRRVTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAY 160
           W  ++ +E +  LR++ P  V   L+     P L  + + WA +   +  +FA   ++  
Sbjct: 58  WFARINSEFAAPLRQLGPRFVVRALQHAAGEPLLCVRLYVWASR---FGQHFARDRSVRR 114

Query: 161 CLSRNNLFRA---------AD------QVPE-----LMDSQGRIA---EMLEILEKMRRN 197
            L    L R          AD      +V E     L++S GR+       E+  ++ R 
Sbjct: 115 ALGDALLRRGPVVLSAALVADVRSCGCEVSEELLCALVESWGRLGLAHYAHEVFVQVPRL 174

Query: 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
             +P    Y A+I        +DA    +++M  D    D   Y TL+ G+C+ G V   
Sbjct: 175 GLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEA 234

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
             L ++M+  GI  +   Y +L++G     +V +A  +L+ + + G  A    Y S++ G
Sbjct: 235 LRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEATYRSLVHG 294

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK------ 371
             R  + ++AY++    ++ D        + LL C ++        +L  +M K      
Sbjct: 295 AFRCLEKERAYRMLSEWIESDPTLHSIAYHTLLYCLSKNDMDKEAVELAKKMSKRGYLLG 354

Query: 372 -LKFSV----------AADLEKFFEFLV------GKEERIMM------------ALDVFE 402
              FS+          ++DL +  +  +      G +  IM+            A   F 
Sbjct: 355 STTFSIVIPCAVKVLESSDLCELVDDFIKKGGNLGFDMYIMIIKSFLRCKDISKANKYFS 414

Query: 403 ELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           ++   G  SSV  YNI++    + GEV++AL     M+      N ++F+  I  +++ G
Sbjct: 415 QMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLG 474

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTE 518
           ++ +A      ++E   +P V  +  L  GLC   ++D A     +C   ++     P  
Sbjct: 475 NVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAF----NCFSEMSEWGVRPNV 530

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
             Y + I  +C +G   K IE+LN+M  +G  P+    +A I   C+   +E+A+K+F +
Sbjct: 531 QTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFND 590

Query: 579 L 579
           +
Sbjct: 591 M 591



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/396 (21%), Positives = 148/396 (37%), Gaps = 71/396 (17%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK--------- 231
           +G + E L ++++M R   +P+V  YT ++        ++  + V E MK+         
Sbjct: 228 RGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEAT 287

Query: 232 ----------------------DLVEAD----VMAYVTLIMGLCKGGRVVRGHELFREMK 265
                                 + +E+D     +AY TL+  L K        EL ++M 
Sbjct: 288 YRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIAYHTLLYCLSKNDMDKEAVELAKKMS 347

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           + G L+    + ++I   V   +    C+L+ D +  G      +Y  II    R K   
Sbjct: 348 KRGYLLGSTTFSIVIPCAVKVLESSDLCELVDDFIKKGGNLGFDMYIMIIKSFLRCKDIS 407

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS---------- 375
           KA K F   V D L     + N ++ C A+ G ++   + +  M++  FS          
Sbjct: 408 KANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLI 467

Query: 376 -----------------------VAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS 410
                                  +  D+  F   + G     ++  A + F E+   G  
Sbjct: 468 NGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVR 527

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
            +V  YN+L+  L   G V KA+ L  KM+   +  ++ SF+  I        I +A + 
Sbjct: 528 PNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKL 587

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
            N +      P    YN L K LC    +D A  ++
Sbjct: 588 FNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEII 623



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 90/191 (47%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +   LE ++ M+ +   P++  +  +I       N+       + + +  +  DV+ +
Sbjct: 439 GEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMPDVITF 498

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI GLC   ++      F EM E G+  +   Y VLI GL   G V KA +LL  +  
Sbjct: 499 TSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELLNKMKM 558

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   +N+ I   CR+++ +KA KLF    +  ++PD  T N L+    +  R+D 
Sbjct: 559 DGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKALCDERRVDE 618

Query: 362 FFKLLAQMEKL 372
             +++  ME +
Sbjct: 619 AKEIILAMESI 629



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 143/344 (41%), Gaps = 16/344 (4%)

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
            HE+F ++   G+    AIY  +I   V  G V  A    + +   G R D   YN+++ 
Sbjct: 164 AHEVFVQVPRLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVH 223

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           G+CR    D+A +L +   +  + P+  T   L+       R++    +L +M++   S 
Sbjct: 224 GVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKGVSA 283

Query: 377 AADLEKFF---EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALY 433
                +      F   ++ER    L  + E     +S    Y+ L+  L +    K+A+ 
Sbjct: 284 TEATYRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIA--YHTLLYCLSKNDMDKEAVE 341

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           L  KM      + S +FSI I C V+  +  + CE  +  I+         Y  + K   
Sbjct: 342 LAKKMSKRGYLLGSTTFSIVIPCAVKVLESSDLCELVDDFIKKGGNLGFDMYIMIIKSFL 401

Query: 494 KIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
           +  +I  A      M+    L +V S      Y + I    ++GE E+ +E +  M + G
Sbjct: 402 RCKDISKANKYFSQMVSDGLLSSVES------YNIVIDCFAKAGEVERALETIKVMQESG 455

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
             PN V  + +I+G  K G + +A+     + E  L+ +  T  
Sbjct: 456 FSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFT 499



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 112/254 (44%), Gaps = 14/254 (5%)

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V +Y  +I   A    ++  L   + M++     +++ + TLI G  K G V       +
Sbjct: 425 VESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLK 484

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            + E+G++ D   +  LI+GL    ++  A +   ++ + G R ++  YN +I GLC   
Sbjct: 485 MVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAG 544

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
              KA +L      D + PD  + N  ++    M +++   KL   M   ++ V+ D   
Sbjct: 545 HVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMS--RYGVSPDSYT 602

Query: 383 FFEFL--------VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYL 434
           +   +        V + + I++A++    +  K ++  P+    +GAL ++G   +A   
Sbjct: 603 YNALIKALCDERRVDEAKEIILAMESISCIGTKQHTYWPV----VGALTKMGRFSEAGMF 658

Query: 435 FGKMRGLNLEVNSL 448
             K+   N  + S+
Sbjct: 659 MNKLHRKNAHLGSV 672



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 2/173 (1%)

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L  ALL  G V  +  L   +R    EV+       ++     G    A E   ++  + 
Sbjct: 116 LGDALLRRGPVVLSAALVADVRSCGCEVSEELLCALVESWGRLGLAHYAHEVFVQVPRLG 175

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             PS A YN +     + G +DAA +  +    +    P  F Y   +  VCR G  ++ 
Sbjct: 176 LRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPAD-GCRPDCFTYNTLVHGVCRRGIVDEA 234

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL-LTEAN 589
           + ++ +M + G  PN V  + ++ G C    +EEA  V   ++E+ +  TEA 
Sbjct: 235 LRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEAT 287



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 17/147 (11%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G + N  +YN L + L                 S G +++ +E+L KM+ +   PD +++
Sbjct: 525 GVRPNVQTYNVLIHGLC----------------SAGHVSKAIELLNKMKMDGITPDAYSF 568

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
            A I      R ++   +++ +M +  V  D   Y  LI  LC   RV    E+   M+ 
Sbjct: 569 NAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEIILAMES 628

Query: 267 -NGILIDRAIYGVLIEGLVGEGKVGKA 292
            + I   +  Y  ++  L   G+  +A
Sbjct: 629 ISCIGTKQHTYWPVVGALTKMGRFSEA 655


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 178/407 (43%), Gaps = 67/407 (16%)

Query: 115 RRVTPDL---------VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLS 163
           RRV+PD+         +  + ++     +A     W     G   + A+YN+L   YC  
Sbjct: 185 RRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAW-----GLAPSVATYNSLIDGYCKK 239

Query: 164 RNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACL 223
                             G +  +  +L++M      P    +  +I       N  A +
Sbjct: 240 ---------------GGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAV 284

Query: 224 RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
           RV+EEMK+  + A V+ Y +LI GLC  G+V  G +L  EM++ G+  +   +G +++G 
Sbjct: 285 RVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGF 344

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
             +G +  A D +  + +     D+ IYN +I    R+ + + A  + E   +  ++P+ 
Sbjct: 345 CKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNV 404

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE 403
           +T N L+                       FS + D                 A  + +E
Sbjct: 405 TTYNCLIT---------------------GFSRSGDWRS--------------ASGLLDE 429

Query: 404 LKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
           +K KG  + V  YN+L+GAL   GEV+KA+ L  +M  + LE N L+++  IQ   + G+
Sbjct: 430 MKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGN 489

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           I  A E   ++ +  +  +V  YN   K  C+IG++D A  L+ + L
Sbjct: 490 IKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEML 536



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 179/411 (43%), Gaps = 13/411 (3%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +P   +  A++  L   + +D   + +    +  V  D+  + T+I GLC+ G++ +  +
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD---LLKDLVDSGYRADLGIYNSIIG 316
           + +++K  G+    A Y  LI+G   +G  G       LLK++V++G       +  +I 
Sbjct: 213 VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLIN 272

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           G C+      A ++FE   Q  +A    T N L+      G+++   KL+ +ME L  S 
Sbjct: 273 GYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLS- 331

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP----IYNILMGALLEIGEVKKAL 432
             +   F   L G  ++ MMA D  + + G    +V     IYNIL+     +G+++ A+
Sbjct: 332 -PNEITFGCVLKGFCKKGMMA-DANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAM 389

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            +   M    +  N  +++  I     SGD   A    +++ E      V  YN L   L
Sbjct: 390 AVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGAL 449

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           C  GE+  A+ L+ D +  V   P    Y   I   C  G  +   E+   M +     N
Sbjct: 450 CCKGEVRKAVKLL-DEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRAN 508

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
            V  +  I   C+ G ++EA  +   + ++ L+   N I Y+ I    M+K
Sbjct: 509 VVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVP--NGITYETIKEGMMEK 557



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ + + + E M +    P+V  Y  +I   +   +  +   + +EMK+  +EADV+ Y
Sbjct: 383 GKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTY 442

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI  LC  G V +  +L  EM E G+  +   Y  +I+G   +G +  A ++   +  
Sbjct: 443 NVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK 502

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
              RA++  YN  I   C++ + D+A  L    +   L P+  T
Sbjct: 503 CRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGIT 546


>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
 gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
          Length = 637

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/420 (23%), Positives = 188/420 (44%), Gaps = 34/420 (8%)

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           + Y  +++     R +    +V+EEM++   + D+ AY  L+  L K G V +  ++F +
Sbjct: 187 YTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFED 246

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           MK+   + D   Y +LI      G+  K      ++V  G   +L  +N+II  L + K 
Sbjct: 247 MKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKM 306

Query: 324 FDKAYKLFEVTVQDDLAPD---FSTVNPLLVCCAEMGRMDNFFKLLAQ-MEKLKFSV--- 376
            DK   +    V++D  P+   +S    +L    ++ R++    + ++ M +  +S    
Sbjct: 307 VDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLVK 366

Query: 377 -----------------------AADLEKFFEFL--VGKEERIMMALDVFEELKGKG-YS 410
                                    D + F   L  +   E+ + A+D+   +  KG  +
Sbjct: 367 SLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVT 426

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            V +YN++  AL ++ +V     LF KM+   +  +  +++I I  +   G + +A E  
Sbjct: 427 DVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELF 486

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
             +   S  P V  YN L   L K G++D A ML ++ +      P  F Y++ I    +
Sbjct: 487 EVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKE-MQEKGYDPDVFTYSILIECFGK 545

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           S + E    + +EM  EGC PN V  + ++  + + G  EEA K++  ++++ L+ ++ T
Sbjct: 546 SNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSIT 605



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 168/397 (42%), Gaps = 42/397 (10%)

Query: 108 VTELSKLRRVTPDLVAE--VLKVENNPTLASKFFHWAGK--QKGYKHNFASYNALAYCLS 163
           V E  K +   PD      ++++       SKF  +  +   KG   N  ++N +   L 
Sbjct: 243 VFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALG 302

Query: 164 RNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL---- 219
           +N +                + +++ +L KM  N C+P+ F Y+  + +LA E  L    
Sbjct: 303 KNKM----------------VDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLN 346

Query: 220 ---DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
              D C R    M + +       Y  L+  LCK G     H +F  M  +    DR  +
Sbjct: 347 EVLDICSRF---MNRSI-------YSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAF 396

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
             ++E L    K  +A DLL  + + G   D+G+YN +   L ++KQ      LF+    
Sbjct: 397 VSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKT 456

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERI 394
           + + PD  T N ++     +G +D   +L   ME    S   D+  +   +  +GK   +
Sbjct: 457 NGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEA--SSCKPDVVTYNSLINCLGKHGDL 514

Query: 395 MMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
             A  +F+E++ KGY   V  Y+IL+    +  +V+ A  LF +M       N ++++I 
Sbjct: 515 DEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNIL 574

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           + C    G   EA + +  + +   +P    Y+ L +
Sbjct: 575 LDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILER 611



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/422 (20%), Positives = 172/422 (40%), Gaps = 48/422 (11%)

Query: 200 KPDVFAYTAMIRVLAAER-NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           + D F+Y  ++ +L   R      LR+  +M++D V  ++     L+     G  + R  
Sbjct: 115 RHDAFSYNRILALLFRTRAGPSEALRLVADMERDGVAGNISTINLLVGMGGGGVEMERCL 174

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           EL  +    G+ +    Y  +++  +   +V K   + +++   GY+ D+  YN ++  L
Sbjct: 175 ELASKW---GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDAL 231

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--------- 369
            +    D+A+++FE   Q    PD  T   L+    + GR   F     +M         
Sbjct: 232 AKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNL 291

Query: 370 ----------------EKLKFSVAADLE-----KFFEFLV--------GKEERIMMALDV 400
                           +K+ F ++  +E       F + +        G+  R+   LD+
Sbjct: 292 IAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDI 351

Query: 401 FEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
                 +      IY+ L+ +L + G   +A  +F +M   + + +  +F   ++    +
Sbjct: 352 CSRFMNRS-----IYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNA 406

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
              LEA +  + + E   V  V  YN +   L K+ ++     L  D +      P  F 
Sbjct: 407 EKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLF-DKMKTNGIIPDVFT 465

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           Y + I    R G  +K  E+   M    C P+ V  +++I+ + KHG L+EA  +F  ++
Sbjct: 466 YNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQ 525

Query: 581 ER 582
           E+
Sbjct: 526 EK 527


>gi|414865591|tpg|DAA44148.1| TPA: hypothetical protein ZEAMMB73_616668 [Zea mays]
          Length = 838

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 151/610 (24%), Positives = 252/610 (41%), Gaps = 118/610 (19%)

Query: 88  IARFITDAFRKNQFQWGPQVVTELSKLRRV----TPDLVAEVLKVENNPTLASKFFHWAG 143
           +A  + D F +      P+   + ++LRR+    TP     V+    +   A  FF WA 
Sbjct: 39  LAHHLLDEFSR------PRATRDAARLRRLAAYLTPPAAESVILRLPSWRHALDFFRWAA 92

Query: 144 KQKGYKHNFASYNALAYCL---SRNNLFRAADQ--VPELMDSQGRIAEML---------- 188
           +Q G++H+  S NA+A  L    R +L R A    V     + G +  +L          
Sbjct: 93  EQPGFRHSCYSLNAMASLLPPHQRAHLDRLATDALVSRCSMTPGALGFLLRRLGAAGLPD 152

Query: 189 ---EILEKMRRNL-CKPDVFAYTAMIRVLA-AERNLDACLRVWEEM-------------- 229
               + +  +  L C P+ + Y  ++  LA A R  DA  R+ E +              
Sbjct: 153 TAARVFDAAKTTLSCAPNSYTYNCLLDALAKAGRAEDAEARLQEMVVTCGDESVDRYTLT 212

Query: 230 -----------------------KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
                                  K+  V+  V+    LI+   K G+V    EL   M+ 
Sbjct: 213 SLLQCYCNAGRPEDASAVLQRMSKRAWVDEHVL--TMLIVAYSKWGKVEDAVELLGRMEA 270

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
             +  +     VL+ GL  +G+V  A ++   +   G+  DL +Y+ +I GLC   +  K
Sbjct: 271 LDMRPNEKTLSVLVHGLARQGRVDVAMNMFGKMASYGFSVDLAMYSVLIEGLCHGNEMGK 330

Query: 327 AYKLFEVTVQDDLAP----------------DFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           A KLFE   +D + P                DFSTV P +         +N   L     
Sbjct: 331 AVKLFEDMKRDRITPDVRLLKKIIEAFCRQGDFSTVGPFI--------NENAVHLKPGSA 382

Query: 371 KLKFSVAAD-------LEKFFEFL---VGKEERI----MMALDVF---EELKGKGYSSVP 413
            L ++V  D       +E  ++ L   V  ++R+     + + +F   E++K    S   
Sbjct: 383 VLLYNVILDGLINHGEVEAAYQLLSSMVRGDQRVSDDDTVGVHIFVITEDVKPNSDS--- 439

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            +NI++  L ++ ++  AL L   M GL  +   L F+  I     SG + EA E  N++
Sbjct: 440 -FNIVVCGLCKVKKLDLALALTKDMVGLGCKGKLLMFNDLILELCNSGKLDEAYEIFNQM 498

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            ++   PS   YN L  G+C+  +  AA  L+R+   N A  P        +  +C SG 
Sbjct: 499 KDLGLKPSEFTYNSLLYGICRRKDTSAAADLLREMRAN-AHKPWIKNCTDMVQQLCLSGR 557

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
             + ++ L+ M + G  P+ V  SA ++GMCK G +E A  +F ++  +  L +   +V 
Sbjct: 558 ITEALQFLDGMLELGFLPDIVTYSAAMNGMCKVGDIENALGLFLDISSKCYLPD---VVA 614

Query: 594 DEILIEHMKK 603
             ILI   +K
Sbjct: 615 HNILINGFRK 624



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 106/492 (21%), Positives = 199/492 (40%), Gaps = 92/492 (18%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ + +E+L +M     +P+    + ++  LA +  +D  + ++ +M       D+  Y
Sbjct: 256 GKVEDAVELLGRMEALDMRPNEKTLSVLVHGLARQGRVDVAMNMFGKMASYGFSVDLAMY 315

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDR---------------------------- 273
             LI GLC G  + +  +LF +MK + I  D                             
Sbjct: 316 SVLIEGLCHGNEMGKAVKLFEDMKRDRITPDVRLLKKIIEAFCRQGDFSTVGPFINENAV 375

Query: 274 --------AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD----LGI----------- 310
                    +Y V+++GL+  G+V  A  LL  +V    R      +G+           
Sbjct: 376 HLKPGSAVLLYNVILDGLINHGEVEAAYQLLSSMVRGDQRVSDDDTVGVHIFVITEDVKP 435

Query: 311 ----YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
               +N ++ GLC+VK+ D A  L +  V           N L++     G++D  +++ 
Sbjct: 436 NSDSFNIVVCGLCKVKKLDLALALTKDMVGLGCKGKLLMFNDLILELCNSGKLDEAYEIF 495

Query: 367 AQMEKLKF--------------------SVAADLEKFFEFLVGK---------------E 391
            QM+ L                      S AADL +       K                
Sbjct: 496 NQMKDLGLKPSEFTYNSLLYGICRRKDTSAAADLLREMRANAHKPWIKNCTDMVQQLCLS 555

Query: 392 ERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
            RI  AL   + +   G+   +  Y+  M  + ++G+++ AL LF  +       + ++ 
Sbjct: 556 GRITEALQFLDGMLELGFLPDIVTYSAAMNGMCKVGDIENALGLFLDISSKCYLPDVVAH 615

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +I I    ++G   EA E   +++    +PSV  YN +    CK G ID A+  V   + 
Sbjct: 616 NILINGFRKAGKFDEAQEIMEEMLSKGMLPSVVTYNLMIDIWCKSGSIDKAITCVYKMI- 674

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
           +    PT   Y   +  +C +G  ++ I +  +M ++GC PN +  +A+++G+CK G +E
Sbjct: 675 DEEKPPTVVTYTSLLDGLCNAGRPDEAIVLWCKMREKGCSPNGIAYTALVNGLCKCGRME 734

Query: 571 EARKVFTNLRER 582
            A   +  ++ +
Sbjct: 735 TAVNYYEEMKTK 746



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 129/291 (44%), Gaps = 10/291 (3%)

Query: 164 RNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACL 223
           +  L    D + EL +S G++ E  EI  +M+    KP  F Y +++  +   ++  A  
Sbjct: 469 KGKLLMFNDLILELCNS-GKLDEAYEIFNQMKDLGLKPSEFTYNSLLYGICRRKDTSAAA 527

Query: 224 RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
            +  EM+ +  +  +     ++  LC  GR+    +    M E G L D   Y   + G+
Sbjct: 528 DLLREMRANAHKPWIKNCTDMVQQLCLSGRITEALQFLDGMLELGFLPDIVTYSAAMNGM 587

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
              G +  A  L  D+    Y  D+  +N +I G  +  +FD+A ++ E  +   + P  
Sbjct: 588 CKVGDIENALGLFLDISSKCYLPDVVAHNILINGFRKAGKFDEAQEIMEEMLSKGMLPSV 647

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQM-EKLKFSVAADLEKFFEFL--VGKEERIMMALDV 400
            T N ++    + G +D     + +M ++ K           + L   G+ +    A+ +
Sbjct: 648 VTYNLMIDIWCKSGSIDKAITCVYKMIDEEKPPTVVTYTSLLDGLCNAGRPDE---AIVL 704

Query: 401 FEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSL 448
           + +++ KG S   I Y  L+  L + G ++ A+  + +M  +G +L++ SL
Sbjct: 705 WCKMREKGCSPNGIAYTALVNGLCKCGRMETAVNYYEEMKTKGFDLDIFSL 755



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 131/300 (43%), Gaps = 15/300 (5%)

Query: 325 DKAYKLFEVTVQD-DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           D A ++F+        AP+  T N LL   A+ GR ++    L +M       + D    
Sbjct: 152 DTAARVFDAAKTTLSCAPNSYTYNCLLDALAKAGRAEDAEARLQEMVVTCGDESVDRYTL 211

Query: 384 FEFL-----VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM 438
              L      G+ E    A  V + +  + +    +  +L+ A  + G+V+ A+ L G+M
Sbjct: 212 TSLLQCYCNAGRPED---ASAVLQRMSKRAWVDEHVLTMLIVAYSKWGKVEDAVELLGRM 268

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
             L++  N  + S+ +      G +  A     K+        +A Y+ L +GLC   E+
Sbjct: 269 EALDMRPNEKTLSVLVHGLARQGRVDVAMNMFGKMASYGFSVDLAMYSVLIEGLCHGNEM 328

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC-S 557
             A+ L  D   +  + P        I   CR G+   +   +NE      P + V+  +
Sbjct: 329 GKAVKLFEDMKRDRIT-PDVRLLKKIIEAFCRQGDFSTVGPFINENAVHLKPGSAVLLYN 387

Query: 558 AIISGMCKHGTLEEARKVFTNL-RERKLLTEANTI-VYDEILIEHMK--KKTADLVLSGL 613
            I+ G+  HG +E A ++ +++ R  + +++ +T+ V+  ++ E +K    + ++V+ GL
Sbjct: 388 VILDGLINHGEVEAAYQLLSSMVRGDQRVSDDDTVGVHIFVITEDVKPNSDSFNIVVCGL 447


>gi|255661020|gb|ACU25679.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 376

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 164/357 (45%), Gaps = 13/357 (3%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           S +A+ Y    N  FR            GRI +  E+ E M +   + +V ++  M+R L
Sbjct: 22  SLDAVVYNTMLNGFFRV-----------GRIKDCFELWELMGKEGSR-NVASFNIMMRGL 69

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
                +D  + +WE MKK     D + Y  L+ G CK G V +   +    +  G ++D 
Sbjct: 70  FNNGKVDEVILIWELMKKSGFVEDSITYGILVHGFCKNGDVNKSLHVLEIAEMKGGVLDA 129

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             Y  +I GL  + K+ KA  +L  ++ SG + +  +YN++I GL    +F+ A ++F+ 
Sbjct: 130 FAYSAMINGLCKDSKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGSSKFEDAIRVFQE 189

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER 393
                 +P   T N L+    +  R    + L+ +M +  ++            +    +
Sbjct: 190 MGSTHCSPTIITYNTLINGLCKGERFGEAYDLVKEMLEKGWNPCVITYSMLIKGLCLCHK 249

Query: 394 IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           + MAL ++ ++  KG+   + ++NIL+  L  +G+++ AL L+  M   N   N ++ + 
Sbjct: 250 VEMALQLWYQVTSKGFKPDIQMHNILIHGLCSVGKMQLALSLYFDMNHWNCAPNLVTHNT 309

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
            ++   + GD+  A     +I+     P + +YN   KGLC    I  A++ + D L
Sbjct: 310 LMEGFYKDGDVRNALVIWARILRNGLQPDIISYNITLKGLCSCNRISGAILFLHDAL 366



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 132/298 (44%), Gaps = 5/298 (1%)

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
            G +  A  + KD+V+S    D  +YN+++ G  RV +    ++L+E+  ++  + + ++
Sbjct: 3   SGDIDGAEMVYKDIVESKLSLDAVVYNTMLNGFFRVGRIKDCFELWELMGKEG-SRNVAS 61

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE--E 403
            N ++      G++D    +   M+K  F   +           K   +  +L V E  E
Sbjct: 62  FNIMMRGLFNNGKVDEVILIWELMKKSGFVEDSITYGILVHGFCKNGDVNKSLHVLEIAE 121

Query: 404 LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
           +KG G      Y+ ++  L +  ++ KA+ +   M     + N+  ++  I   V S   
Sbjct: 122 MKG-GVLDAFAYSAMINGLCKDSKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGSSKF 180

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
            +A     ++      P++  YN L  GLCK      A  LV++ L      P    Y++
Sbjct: 181 EDAIRVFQEMGSTHCSPTIITYNTLINGLCKGERFGEAYDLVKEMLEK-GWNPCVITYSM 239

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            I  +C   + E  +++  ++T +G  P+  + + +I G+C  G ++ A  ++ ++  
Sbjct: 240 LIKGLCLCHKVEMALQLWYQVTSKGFKPDIQMHNILIHGLCSVGKMQLALSLYFDMNH 297



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 10/190 (5%)

Query: 399 DVFE--ELKGK-GYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           D FE  EL GK G  +V  +NI+M  L   G+V + + ++  M+      +S+++ I + 
Sbjct: 43  DCFELWELMGKEGSRNVASFNIMMRGLFNNGKVDEVILIWELMKKSGFVEDSITYGILVH 102

Query: 456 CHVESGDILEACECHNKIIEM-SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
              ++GD+ ++     +I EM   V    AY+ +  GLCK  ++D A+ ++    G + S
Sbjct: 103 GFCKNGDVNKSLHVL-EIAEMKGGVLDAFAYSAMINGLCKDSKLDKAVSVLN---GMIKS 158

Query: 515 G--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           G  P    Y   I  +  S + E  I V  EM    C P  +  + +I+G+CK     EA
Sbjct: 159 GCKPNAHVYNALINGLVGSSKFEDAIRVFQEMGSTHCSPTIITYNTLINGLCKGERFGEA 218

Query: 573 RKVFTNLRER 582
             +   + E+
Sbjct: 219 YDLVKEMLEK 228



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 121/269 (44%), Gaps = 11/269 (4%)

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C     D A  +++  V+  L+ D    N +L     +GR+ + F+L   M K      A
Sbjct: 1   CESGDIDGAEMVYKDIVESKLSLDAVVYNTMLNGFFRVGRIKDCFELWELMGKEGSRNVA 60

Query: 379 DLEKFFEFLV--GKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLF 435
                   L   GK + +++   ++E +K  G+    I Y IL+    + G+V K+L++ 
Sbjct: 61  SFNIMMRGLFNNGKVDEVIL---IWELMKKSGFVEDSITYGILVHGFCKNGDVNKSLHVL 117

Query: 436 --GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
              +M+G  L+  + ++S  I    +   + +A    N +I+    P+   YN L  GL 
Sbjct: 118 EIAEMKGGVLD--AFAYSAMINGLCKDSKLDKAVSVLNGMIKSGCKPNAHVYNALINGLV 175

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
              + + A+ + ++ +G+    PT   Y   I  +C+     +  +++ EM ++G  P  
Sbjct: 176 GSSKFEDAIRVFQE-MGSTHCSPTIITYNTLINGLCKGERFGEAYDLVKEMLEKGWNPCV 234

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRER 582
           +  S +I G+C    +E A +++  +  +
Sbjct: 235 ITYSMLIKGLCLCHKVEMALQLWYQVTSK 263



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 88/220 (40%), Gaps = 19/220 (8%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
           + G K N   YNAL   L  ++ F  A +V + M S                     R  
Sbjct: 157 KSGCKPNAHVYNALINGLVGSSKFEDAIRVFQEMGSTHCSPTIITYNTLINGLCKGERFG 216

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E  +++++M      P V  Y+ +I+ L     ++  L++W ++     + D+  +  LI
Sbjct: 217 EAYDLVKEMLEKGWNPCVITYSMLIKGLCLCHKVEMALQLWYQVTSKGFKPDIQMHNILI 276

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLC  G++     L+ +M       +   +  L+EG   +G V  A  +   ++ +G +
Sbjct: 277 HGLCSVGKMQLALSLYFDMNHWNCAPNLVTHNTLMEGFYKDGDVRNALVIWARILRNGLQ 336

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
            D+  YN  + GLC   +   A       +   + P   T
Sbjct: 337 PDIISYNITLKGLCSCNRISGAILFLHDALTKKIVPTIIT 376


>gi|242048586|ref|XP_002462039.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
 gi|241925416|gb|EER98560.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
          Length = 798

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 123/512 (24%), Positives = 204/512 (39%), Gaps = 93/512 (18%)

Query: 180 SQGRIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNL-DACLRVWEEMKKDLVEAD 237
           S GR  E ++   +M     C+P  F Y A++RVL A   +    L ++  M       +
Sbjct: 149 SAGRHHEAVDAFSRMEGEFGCRPTTFVYNAVLRVLVASGGVVPLALALYNRMVAAGCLPN 208

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
              Y  L+ GLCK G  V   +LF EM + GI  +   + +L+  +   G++ +A +LL 
Sbjct: 209 RATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHTILLSSMCNAGQLKEAENLLN 268

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK------------------------LF-- 331
            + D G   D   YN+ + GLC+  + D+A +                        LF  
Sbjct: 269 SMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTGTFVLGLKGYSCLIDGLFLA 328

Query: 332 -----------EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS----- 375
                      EV  Q D +PD      ++  CAE GR+D+ F    +M++ +F+     
Sbjct: 329 GRYEEGFQCYMEVLEQADFSPDIVLYTIMIRGCAEAGRIDDAFAFFDEMKEKRFTPDTFC 388

Query: 376 ----------------------------VAADLEKFFEFLVG--KEERIMMALDVFEELK 405
                                       V  D       + G  K++ +  A+ VF+ + 
Sbjct: 389 YNTLLKALCDSGDLDGARSLMSEMAQNNVVLDTNTHTIMIHGLCKKQLVDEAMQVFDGMV 448

Query: 406 GKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMR-------------GLNLEVNSLSFS 451
             G + +V  YN+L+  L     +++A  LF KM              G N   +S S  
Sbjct: 449 EVGCHPTVMTYNVLIDGLYRAHRLEEARMLFYKMEVGNNPSLFLRLTLGANQVKDSESLQ 508

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
             +    +SG +L+A +    I++   VP V  YN L  GLCK+  +D A+ L R+ L  
Sbjct: 509 KLVDSMCQSGQVLKAYKLLRGIMDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRE-LQV 567

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
                 E  Y   I  + R+      + +  ++   G  P+  I ++I+  +C+   L +
Sbjct: 568 KGFSLDEITYGTLIDSLLRAHRYNDAMTLFQDILHIGGTPSLSIYNSIMRSLCRMNKLSQ 627

Query: 572 ARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           A     N     LL + N    DE++    KK
Sbjct: 628 A----INFWFDHLLKKYNLSAQDEVIASARKK 655



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 173/396 (43%), Gaps = 28/396 (7%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           +E+LE+   +   PD+  YT MIR  A    +D     ++EMK+     D   Y TL+  
Sbjct: 339 MEVLEQADFS---PDIVLYTIMIRGCAEAGRIDDAFAFFDEMKEKRFTPDTFCYNTLLKA 395

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC  G +     L  EM +N +++D   + ++I GL  +  V +A  +   +V+ G    
Sbjct: 396 LCDSGDLDGARSLMSEMAQNNVVLDTNTHTIMIHGLCKKQLVDEAMQVFDGMVEVGCHPT 455

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           +  YN +I GL R  + ++A  LF ++ V +         NP L           F +L 
Sbjct: 456 VMTYNVLIDGLYRAHRLEEARMLFYKMEVGN---------NPSL-----------FLRLT 495

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEI 425
               ++K S    L+K  + +  +  +++ A  +   +   G    V  YN L+  L ++
Sbjct: 496 LGANQVKDS--ESLQKLVDSMC-QSGQVLKAYKLLRGIMDSGVVPDVVTYNTLLNGLCKV 552

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
             +  AL LF +++     ++ +++   I   + +    +A      I+ +   PS++ Y
Sbjct: 553 RNLDGALRLFRELQVKGFSLDEITYGTLIDSLLRAHRYNDAMTLFQDILHIGGTPSLSIY 612

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           N + + LC++ ++  A+    D L    +   + +   +       G  ++ +  L ++ 
Sbjct: 613 NSIMRSLCRMNKLSQAINFWFDHLLKKYNLSAQDEVIASARKKFEEGSLDEAVRELIKID 672

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           QE    N    +  + G+ +   +++A K+F  L E
Sbjct: 673 QEYGSVNSCPYTIWLIGLIQARRIDDALKIFHILEE 708



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 15/188 (7%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           V  DV+ Y TL+ GLCK   +     LFRE++  G  +D   YG LI+ L+   +   A 
Sbjct: 535 VVPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFSLDEITYGTLIDSLLRAHRYNDAM 594

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQ--------FDKAYKLFEVTVQDDLAPDFST 345
            L +D++  G    L IYNSI+  LCR+ +        FD   K + ++ QD++      
Sbjct: 595 TLFQDILHIGGTPSLSIYNSIMRSLCRMNKLSQAINFWFDHLLKKYNLSAQDEVIASARK 654

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELK 405
                    E G +D   + L ++++   SV +     +   + +  RI  AL +F  L+
Sbjct: 655 K-------FEEGSLDEAVRELIKIDQEYGSVNSCPYTIWLIGLIQARRIDDALKIFHILE 707

Query: 406 GKGYSSVP 413
             G    P
Sbjct: 708 ESGIDITP 715



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 119/281 (42%), Gaps = 43/281 (15%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + E +++ + M    C P V  Y  +I  L     L+    ++ +M+   V  +   ++ 
Sbjct: 437 VDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEEARMLFYKME---VGNNPSLFLR 493

Query: 244 LIMG----------------LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
           L +G                +C+ G+V++ ++L R + ++G++ D   Y  L+ GL    
Sbjct: 494 LTLGANQVKDSESLQKLVDSMCQSGQVLKAYKLLRGIMDSGVVPDVVTYNTLLNGLCKVR 553

Query: 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
            +  A  L ++L   G+  D   Y ++I  L R  +++ A  LF+  +     P  S  N
Sbjct: 554 NLDGALRLFRELQVKGFSLDEITYGTLIDSLLRAHRYNDAMTLFQDILHIGGTPSLSIYN 613

Query: 348 PLLVCCAEMGRMD---NF--------FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
            ++     M ++    NF        + L AQ E     +A+  +KF E  + +  R ++
Sbjct: 614 SIMRSLCRMNKLSQAINFWFDHLLKKYNLSAQDE----VIASARKKFEEGSLDEAVRELI 669

Query: 397 ALDVFEELKGKGYSSVPI--YNILMGALLEIGEVKKALYLF 435
            +D       + Y SV    Y I +  L++   +  AL +F
Sbjct: 670 KID-------QEYGSVNSCPYTIWLIGLIQARRIDDALKIF 703



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 91/210 (43%), Gaps = 5/210 (2%)

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           AL +F+E+  +G + +V  + IL+ ++   G++K+A  L   M       + ++++  + 
Sbjct: 228 ALKLFDEMLQRGITPNVKTHTILLSSMCNAGQLKEAENLLNSMEDKGCPPDEVTYNAFLS 287

Query: 456 CHVESGDILEACECHNKIIEMSQ-VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
              ++G + EA E    +      V  +  Y+CL  GL   G  +       + L     
Sbjct: 288 GLCKAGRVDEAIERLEALRRTGTFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADF 347

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P    Y + I     +G  +      +EM ++   P+    + ++  +C  G L+ AR 
Sbjct: 348 SPDIVLYTIMIRGCAEAGRIDDAFAFFDEMKEKRFTPDTFCYNTLLKALCDSGDLDGARS 407

Query: 575 VFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           + + + +  ++ + NT     I+I  + KK
Sbjct: 408 LMSEMAQNNVVLDTNT---HTIMIHGLCKK 434



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 449 SFSIAIQCHVESGDILEACECHNKII-EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
           +F   I  H  +G   EA +  +++  E    P+   YN + + L   G +    + + +
Sbjct: 139 AFEALIFAHASAGRHHEAVDAFSRMEGEFGCRPTTFVYNAVLRVLVASGGVVPLALALYN 198

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            +      P    Y + +  +C+ G A   +++ +EM Q G  PN    + ++S MC  G
Sbjct: 199 RMVAAGCLPNRATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHTILLSSMCNAG 258

Query: 568 TLEEARKVFTNLRER 582
            L+EA  +  ++ ++
Sbjct: 259 QLKEAENLLNSMEDK 273



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 1/112 (0%)

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY-ALTILHVCRSGEAEKII 538
           P  AA+  L       G    A+       G     PT F Y A+  + V   G     +
Sbjct: 135 PPAAAFEALIFAHASAGRHHEAVDAFSRMEGEFGCRPTTFVYNAVLRVLVASGGVVPLAL 194

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            + N M   GC PN    + ++ G+CK GT  +A K+F  + +R +     T
Sbjct: 195 ALYNRMVAAGCLPNRATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKT 246


>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
          Length = 551

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/419 (25%), Positives = 181/419 (43%), Gaps = 51/419 (12%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           + G K N   YN+L    +R                  R+AEML+++E       +P V 
Sbjct: 171 RHGVKVNALCYNSLLDAYTREK-------------DDDRVAEMLKVMEN---EGIEPTVG 214

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            YT ++  L+A R++     V+EEMK   +  DV  Y ++I   C+ G V R  E+F E 
Sbjct: 215 TYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDEC 274

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
             NGI  +   YG LI G    G++  A  L+ D+   G   +  ++N++I G CR    
Sbjct: 275 VGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMV 334

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           DKA ++  +  +  +  D  T N L        RMD    LL                  
Sbjct: 335 DKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLL------------------ 376

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                   RIM+        KG   + V  Y  L+      G++ +A  LF +M G   E
Sbjct: 377 --------RIMIE-------KGVRPNHVS-YTTLISIHCNEGDMVEARRLFREMAGNGAE 420

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            + +++++ +  +++ G I EA     ++ +   VP + +Y  L  G C  G++D A+ L
Sbjct: 421 PSLVTYNVMMDGYIKKGSIREAERFKKEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRL 480

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
             + +    S P    Y   I  + + G +E+  ++ + M  +G  P++ + SA++  +
Sbjct: 481 FEE-MKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSL 538



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 162/370 (43%), Gaps = 28/370 (7%)

Query: 224 RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
           ++ +EM +  V+ + + Y +L+    +     R  E+ + M+  GI      Y +L++GL
Sbjct: 164 QLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGL 223

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
                + K   + +++       D+  Y+S+I   CR     +A ++F+  V + + P+ 
Sbjct: 224 SAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNE 283

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQME-------KLKFSVAAD-------LEKFFEFLVG 389
            T   L+    ++G+M+    L+  M+       ++ F+   D       ++K  E  + 
Sbjct: 284 HTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKM- 342

Query: 390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
             E++ + LDV+             YN L   L     + +A  L   M    +  N +S
Sbjct: 343 IMEKMGIELDVY------------TYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVS 390

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           ++  I  H   GD++EA     ++      PS+  YN +  G  K G I  A    ++ +
Sbjct: 391 YTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKKE-M 449

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
                 P  + YA  +   C +G+ +  + +  EM Q G  PN V  +A+ISG+ K G  
Sbjct: 450 EKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRS 509

Query: 570 EEARKVFTNL 579
           EEA +++ N+
Sbjct: 510 EEAFQLYDNM 519



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 133/314 (42%), Gaps = 8/314 (2%)

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           V+++G    G+V  A  LL ++   G + +   YNS++    R K  D+  ++ +V   +
Sbjct: 148 VVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENE 207

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERI 394
            + P   TV    +    +    +  K+ A  E++K    +    F+  ++    +   +
Sbjct: 208 GIEP---TVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNV 264

Query: 395 MMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
             A +VF+E  G G   +   Y  L+    +IG+++ A  L   M+   + +N + F+  
Sbjct: 265 RRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTM 324

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
           I  +     + +A E    + +M     V  YN L  GL +   +D A  L+R  +    
Sbjct: 325 IDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLR-IMIEKG 383

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
             P    Y   I   C  G+  +   +  EM   G  P+ V  + ++ G  K G++ EA 
Sbjct: 384 VRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAE 443

Query: 574 KVFTNLRERKLLTE 587
           +    + ++ L+ +
Sbjct: 444 RFKKEMEKKGLVPD 457



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 97/207 (46%), Gaps = 16/207 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G + +  +YN LA  L R N                R+ E   +L  M     +P+ 
Sbjct: 345 EKMGIELDVYTYNTLACGLRRAN----------------RMDEAKNLLRIMIEKGVRPNH 388

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            +YT +I +   E ++    R++ EM  +  E  ++ Y  ++ G  K G +       +E
Sbjct: 389 VSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKKE 448

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M++ G++ D   Y  L+ G    GKV  A  L +++   G + +L  Y ++I GL +  +
Sbjct: 449 MEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGR 508

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            ++A++L++  + D L PD +  + L+
Sbjct: 509 SEEAFQLYDNMLGDGLTPDDALYSALV 535


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/429 (22%), Positives = 194/429 (45%), Gaps = 14/429 (3%)

Query: 187  MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
            ++ +  KM       D++++T +I            L +  +M K   +  ++   +L+ 
Sbjct: 634  VIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLN 693

Query: 247  GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
            G C+G R      L   M E G+  +  IY  +I GL     +  A ++   +   G  A
Sbjct: 694  GFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVA 753

Query: 307  DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM---DNFF 363
            D   YN++I GLC   ++  A +L    V+  + P+      L+    + G +    N +
Sbjct: 754  DAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLY 813

Query: 364  KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMG 420
            K     E ++ SV  ++  +   + G   + R+  A  +F+ +  KG +  V  YN L+ 
Sbjct: 814  K-----EMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLIT 868

Query: 421  ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
               +   V+  + LF +M    L  ++ +++  I  + ++G +  A +  N++++    P
Sbjct: 869  GFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPP 928

Query: 481  SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
             +  YN L   LC  G+I+ A+++V D   N         Y + I  +CR+ + ++   +
Sbjct: 929  DIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDI-ITYNIIIQGMCRNDKVKEAWCL 987

Query: 541  LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
               +T++G   + +    +ISG+C++G   EA K+ T ++E   +      +YDE L +H
Sbjct: 988  FRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSER--IYDETLRDH 1045

Query: 601  MKKKTADLV 609
                +A+L+
Sbjct: 1046 YTSLSAELI 1054



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 182/397 (45%), Gaps = 19/397 (4%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           D++++T +I        L   L +  +M K   +  ++ + +L+ G C   R+     L 
Sbjct: 99  DLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLV 158

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG-YRADLGIYNSIIGGLCR 320
             M ++G   +  +Y  LI+ L   G V  A +LL ++   G   ADL  YN+++ GLC 
Sbjct: 159 ASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCY 218

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             ++ +A ++     +  + PD  T   L+    + G +D   +L  QM  L+ S+  + 
Sbjct: 219 SGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQM--LQSSIGPNT 276

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGK 437
             +   + G     R+  A   F+ +  KG + +V  YN L+    +   V+  + LF +
Sbjct: 277 VTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQR 336

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M    L  ++ +++  I  + + G +  A +  + ++     P +  +  L  GLC  GE
Sbjct: 337 MYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGE 396

Query: 498 IDAAMMLVRDC------LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
           I +AM+   D       LG VA       Y + I  +C++ + E+  E+   +  EG  P
Sbjct: 397 IGSAMVKFNDMRSGEKYLGIVA-------YNIMIHGLCKADKVEEAWELFCRLPVEGVKP 449

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           +    + +I G+CK+G   EA ++F  ++E  ++ +A
Sbjct: 450 DARTYTIMILGLCKNGPRREADELFRRMKEDGIICQA 486



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 162/372 (43%), Gaps = 24/372 (6%)

Query: 147  GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEM 187
            G  H+  S+  L +C  R + F  A  +   M   G                   R  E 
Sbjct: 645  GISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEA 704

Query: 188  LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            + +++ M     +P+V  Y  +I  L   R+L+  L ++  M+K  + AD + Y TLI G
Sbjct: 705  VSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISG 764

Query: 248  LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            LC  GR      L R+M +  I  +   +  LI+  V EG + +A +L K+++      +
Sbjct: 765  LCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPN 824

Query: 308  LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
            +  YNS+I G C   +   A  +F++ V     PD  T N L+    +  R+++  KL  
Sbjct: 825  ILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFC 884

Query: 368  QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLE 424
            +M      +  D   +   + G  +  ++ +A  VF  +   G    +  YNIL+  L  
Sbjct: 885  EMTHQ--GLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCN 942

Query: 425  IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
             G+++KAL +   ++   ++V+ ++++I IQ    +  + EA      +          A
Sbjct: 943  NGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIA 1002

Query: 485  YNCLTKGLCKIG 496
            Y  +  GLC+ G
Sbjct: 1003 YITMISGLCRNG 1014



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 105/443 (23%), Positives = 183/443 (41%), Gaps = 62/443 (13%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEM 187
           G  H+  S+  L +C  R +    A  +   M   G                   RI + 
Sbjct: 95  GISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDA 154

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM-KKDLVEADVMAYVTLIM 246
             ++  M ++  +P+V  Y  +I  L    +++  L +  EM KK  + AD++ Y TL+ 
Sbjct: 155 FSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLT 214

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC  G   +   + R+M +  I  D   +  LI+  V +G + +A +L K ++ S    
Sbjct: 215 GLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGP 274

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           +   YNS+I GLC   +   A K F++       P+  T N L+    +  R+++  KL 
Sbjct: 275 NTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLF 334

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIG 426
            +M +             E LVG         D F             YN L+    ++G
Sbjct: 335 QRMYR-------------EGLVG---------DTFT------------YNTLIHGYCQVG 360

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
           +++ A  +F  M    +  + ++  I +     +G+I  A    N +    +   + AYN
Sbjct: 361 KLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYN 420

Query: 487 CLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
            +  GLCK  +++ A  L   C L      P    Y + IL +C++G   +  E+   M 
Sbjct: 421 IMIHGLCKADKVEEAWELF--CRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMK 478

Query: 546 QEGCPPNEVICSAIISGMCKHGT 568
           ++G     +IC A    + +HGT
Sbjct: 479 EDG-----IICQAEDGHLGEHGT 496



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 135/319 (42%), Gaps = 27/319 (8%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEML---------------- 188
           + GY+ N   YN L  CL +N     A ++   M+ +GR+A  L                
Sbjct: 163 KSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEW 222

Query: 189 ----EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
                IL  M +    PDVF +TA+I     + NLD    ++++M +  +  + + Y +L
Sbjct: 223 RQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSL 282

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLC  GR+    + F  M   G   +   Y  LI G     +V     L + +   G 
Sbjct: 283 INGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGL 342

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCC-AEMGRMDN 361
             D   YN++I G C+V +   A  +F   V   + PD  T   LL  +C   E+G    
Sbjct: 343 VGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMV 402

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
            F  +   EK    VA ++       + K +++  A ++F  L  +G       Y I++ 
Sbjct: 403 KFNDMRSGEKYLGIVAYNI---MIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMIL 459

Query: 421 ALLEIGEVKKALYLFGKMR 439
            L + G  ++A  LF +M+
Sbjct: 460 GLCKNGPRREADELFRRMK 478



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 93/441 (21%), Positives = 178/441 (40%), Gaps = 49/441 (11%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G I   +     MR       + AY  MI  L     ++    ++  +  + V+ D   
Sbjct: 394 NGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDART 453

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL----- 295
           Y  +I+GLCK G      ELFR MKE+GI+          +G +GE        L     
Sbjct: 454 YTIMILGLCKNGPRREADELFRRMKEDGIICQAE------DGHLGEHGTNNQVSLGTIII 507

Query: 296 ----LKDLVDSG----YRADLGIYNSIIGGL-----CRVKQFDKAYKLFEVTVQDDLAPD 342
                + +++SG    Y +D  +++S++G +       VK F + + L      +  +  
Sbjct: 508 CPKRRRSIMESGDLYYYYSDTTLWSSLVGLIPIASSSSVKGFVRRHLLLLERGNNPESRS 567

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
           FS  +            +   +L +++  +KF  A  L                     E
Sbjct: 568 FSGASHHHHHHHHHHYRE---RLRSELHCIKFDDAFGL-------------------FCE 605

Query: 403 ELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
            L+ +   S+  +  ++ A+ ++ +    +YLF KM  L +  +  SF+I I C      
Sbjct: 606 MLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSR 665

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
              A     K++++   PS+     L  G C+      A+ LV D +  +   P    Y 
Sbjct: 666 FSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLV-DSMAELGLEPNVVIYN 724

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             I  +C++ +    +E+   M ++G   + V  + +ISG+C  G   +A ++  ++ +R
Sbjct: 725 TVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKR 784

Query: 583 KLLTEANTIVYDEILIEHMKK 603
           K+  + N I +  ++   +K+
Sbjct: 785 KI--DPNVIFFTALIDTFVKE 803



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 35/196 (17%)

Query: 181  QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            QGR+ +   + + M    C PDV  Y  +I      + ++  ++++ EM    +  D   
Sbjct: 838  QGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFT 897

Query: 241  YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
            Y TLI G C+ G++    ++F  M + G+  D   Y +L++ L   GK+ KA  +++DL 
Sbjct: 898  YNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQ 957

Query: 301  DSGYRADLGIYN-----------------------------------SIIGGLCRVKQFD 325
             +    D+  YN                                   ++I GLCR     
Sbjct: 958  KNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRR 1017

Query: 326  KAYKLFEVTVQDDLAP 341
            +A KL     +D   P
Sbjct: 1018 EADKLCTRMKEDGFMP 1033



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 147  GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
            G   +  +YN L  CL  N                G+I + L ++E +++N    D+  Y
Sbjct: 925  GVPPDIVTYNILLDCLCNN----------------GKIEKALVMVEDLQKNQMDVDIITY 968

Query: 207  TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
              +I+ +     +     ++  + +  V+ D +AY+T+I GLC+ G      +L   MKE
Sbjct: 969  NIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKE 1028

Query: 267  NGILIDRAIY 276
            +G +    IY
Sbjct: 1029 DGFMPSERIY 1038


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/490 (22%), Positives = 210/490 (42%), Gaps = 53/490 (10%)

Query: 128 VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEM 187
           +E+N    ++ F    +  G   N  +YN L     +   F            +G +  M
Sbjct: 125 IESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKG---------KGLLTWM 175

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            E       N   PD+ +Y  +I  LA   NL   + +++EM    V  DVM Y  LI G
Sbjct: 176 FE-------NGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDG 228

Query: 248 LCKGGRVVRGHELF-REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
             + G  V+ +E++ R + E+ +      Y ++I GL   GK+ ++ ++   +  +    
Sbjct: 229 FLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSP 288

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           DL  ++S+I GL +   F+ A K+F+  ++  L+PD  T N +L      G+++  F+L 
Sbjct: 289 DLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELW 348

Query: 367 AQMEK--------------------------------LKFSVAADLEKFFEFLVG--KEE 392
             M K                                 +  + AD   +   + G  K  
Sbjct: 349 NVMSKNNCCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNG 408

Query: 393 RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
            +  AL + EE + +G       Y+ ++  L + G +++A+ L  +M+    ++NS  F+
Sbjct: 409 YLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFN 468

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
             I  +V +  + EA     ++      P+V +YN +  GLCK      A + +++ L  
Sbjct: 469 SLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEE 528

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
               P    Y+L I  +CR  + +  + + ++   +   P+  + + II G+C    ++ 
Sbjct: 529 -GLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDV 587

Query: 572 ARKVFTNLRE 581
           A ++FT +R+
Sbjct: 588 ALEIFTQMRQ 597



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 125/516 (24%), Positives = 227/516 (43%), Gaps = 36/516 (6%)

Query: 108 VTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNL 167
           + EL K+  ++P LV ++LK E NP  A   F  A +  GY H    ++ +   L    L
Sbjct: 1   MVELPKV--ISPTLVLKLLKAEKNPNAALAIFDSACQHPGYAHPPFVFHHILRRLMDPKL 58

Query: 168 FRAADQVPELMDSQ-------------------GRIAEMLEILEKMRRNL-CKPDVFAYT 207
                ++ +LM +Q                       + L + + M     C P + ++ 
Sbjct: 59  VVHVGRIVDLMRAQRCTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFN 118

Query: 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
           +M+               +   +   +  ++  Y  LI   CK  +  +G  L   M EN
Sbjct: 119 SMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFEN 178

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           G+  D   YG LI  L   G +  A +L  ++   G   D+  YN +I G  R   F KA
Sbjct: 179 GLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKA 238

Query: 328 YKLFE-VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
            ++++ +  +  + P   T N ++    ++G++D   ++  +M+K + S   DL  F   
Sbjct: 239 NEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKS--PDLFTFSSM 296

Query: 387 LVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
           + G  K      A  VF+E+   G S  V  YN ++  L   G++ K   L+  M   N 
Sbjct: 297 IHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNC 356

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKII-EMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
             N +S+++ IQ  +++  + +A  C+ +++ E         Y  L  GLCK G ++ A+
Sbjct: 357 -CNIVSYNMLIQGLLDNKKVEQAI-CYWQLLHERGLKADSTTYGLLINGLCKNGYLNKAL 414

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            ++ +   N  +    F Y+  +  +C+ G  E+ +E++++M +     N  + +++I+G
Sbjct: 415 RILEEA-ENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLING 473

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIV-YDEIL 597
             +   LEEA  V   LRE K    A T+V Y+ I+
Sbjct: 474 YVRAFKLEEAISV---LREMKSKDCAPTVVSYNTII 506



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/414 (22%), Positives = 199/414 (48%), Gaps = 8/414 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P++  Y  +I++   +R  +    +   M ++ +  D+++Y TLI  L K G ++   EL
Sbjct: 147 PNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVEL 206

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV-DSGYRADLGIYNSIIGGLC 319
           F EM   G+  D   Y +LI+G + +G   KA ++ K L+ +S     +  YN +I GLC
Sbjct: 207 FDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLC 266

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           ++ + D++ +++    +++ +PD  T + ++   ++ G  +   K+  +M  ++  ++ D
Sbjct: 267 KLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEM--IESGLSPD 324

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGK 437
           +  +   L G  +  ++    +++  +      ++  YN+L+  LL+  +V++A+  +  
Sbjct: 325 VRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIVSYNMLIQGLLDNKKVEQAICYWQL 384

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           +    L+ +S ++ + I    ++G + +A     +           AY+ +  GLCK G 
Sbjct: 385 LHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGM 444

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           ++ A+ L+     N     +    +L   +V R+ + E+ I VL EM  + C P  V  +
Sbjct: 445 LEQAVELIHQMKKNRRKLNSHVFNSLINGYV-RAFKLEEAISVLREMKSKDCAPTVVSYN 503

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLS 611
            II+G+CK     +A      + E  L  + + I Y  ++    + +  D+ L+
Sbjct: 504 TIINGLCKAERFSDAYLSLKEMLEEGL--KPDMITYSLLIDGLCRGEKVDMALN 555



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 193/402 (48%), Gaps = 28/402 (6%)

Query: 141 WAGKQKGYKH-NFASYNALAYCLSRNNLFRAADQV-PELMDS------------------ 180
           W   +K  K  +  +++++ + LS+   F AA++V  E+++S                  
Sbjct: 278 WNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFR 337

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G++ +  E+   M +N C  ++ +Y  +I+ L   + ++  +  W+ + +  ++AD   
Sbjct: 338 TGKLNKCFELWNVMSKNNC-CNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTT 396

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI GLCK G + +   +  E +  G  +D   Y  ++ GL  +G + +A +L+  + 
Sbjct: 397 YGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMK 456

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +  + +  ++NS+I G  R  + ++A  +       D AP   + N ++    +  R  
Sbjct: 457 KNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFS 516

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
           + +  L +M  L+  +  D+  +   + G  + E++ MAL+++ +   K     + ++NI
Sbjct: 517 DAYLSLKEM--LEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNI 574

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++  L    +V  AL +F +MR +N   + ++ +  ++   ++GD +EA +  ++I+E  
Sbjct: 575 IIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAG 634

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPT 517
             P + +YN   KGLC    +  A+  + D L  G + + PT
Sbjct: 635 LQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGILPNAPT 676



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 185/389 (47%), Gaps = 11/389 (2%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P V  Y  MI  L     LD  + +W  MKK+    D+  + ++I GL K G      ++
Sbjct: 253 PSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKV 312

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F+EM E+G+  D   Y  ++ GL   GK+ K C  L +++      ++  YN +I GL  
Sbjct: 313 FQEMIESGLSPDVRTYNAMLSGLFRTGKLNK-CFELWNVMSKNNCCNIVSYNMLIQGLLD 371

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            K+ ++A   +++  +  L  D +T   L+    + G ++   ++L + E    +  ADL
Sbjct: 372 NKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAE----NEGADL 427

Query: 381 EKF-FEFLVG---KEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLF 435
           + F +  +V    K+  +  A+++  ++ K +   +  ++N L+   +   ++++A+ + 
Sbjct: 428 DTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVL 487

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M+  +     +S++  I    ++    +A     +++E    P +  Y+ L  GLC+ 
Sbjct: 488 REMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRG 547

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
            ++D A+ L   C+ N    P    + + I  +C + + +  +E+  +M Q  C P+ V 
Sbjct: 548 EKVDMALNLWHQCI-NKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVT 606

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKL 584
            + I+ G+ K G   EA K++  + E  L
Sbjct: 607 HNTIMEGLYKAGDCVEALKIWDRILEAGL 635



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/317 (20%), Positives = 136/317 (42%), Gaps = 44/317 (13%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G + + L ILE+        D FAY++M+  L  +  L+  + +  +MKK+  + +   
Sbjct: 407 NGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHV 466

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + +LI G  +  ++     + REMK          Y  +I GL    +   A   LK+++
Sbjct: 467 FNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEML 526

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGR 358
           + G + D+  Y+ +I GLCR ++ D A  L+   +   L PD    N ++  +C A    
Sbjct: 527 EEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTA---- 582

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IY 415
                                            +++ +AL++F ++  +  + VP    +
Sbjct: 583 ---------------------------------QKVDVALEIFTQM--RQVNCVPDLVTH 607

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N +M  L + G+  +AL ++ ++    L+ + +S++I  +       + +A E     ++
Sbjct: 608 NTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALD 667

Query: 476 MSQVPSVAAYNCLTKGL 492
              +P+   +N L + +
Sbjct: 668 RGILPNAPTWNVLVRAV 684


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 190/424 (44%), Gaps = 17/424 (4%)

Query: 183 RIAEMLEILEKMRR--NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           R  + L++L  M +   +C PDV  Y  +I     E  +     ++ EM +     DV+ 
Sbjct: 94  RSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVT 153

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + ++I  LCK   V     L R+M +NG+  ++  Y  +I G    G+  +A  + +++ 
Sbjct: 154 HNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMT 213

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D+  +NS +  LC+  +  +A ++F         P+  T   LL   A  G   
Sbjct: 214 GRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFA 273

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYNI 417
           +       M+     + A+   F   +    +R MM  A+ +  E++G+G S  V  Y+ 
Sbjct: 274 DMMSFFNTMK--GDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYST 331

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ AL  +G +  A+  F +M G  ++ N++ +   IQ     GD+++A E    + EM 
Sbjct: 332 LISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKEL---VYEMM 388

Query: 478 Q----VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
                 P++A +N +   +CK G +  A  +  D + ++        +   I   C  GE
Sbjct: 389 NNGIPRPNIAFFNSIVHSICKEGRVMDAHHIF-DLVKDIGERSDIIMFNTLIDGYCLVGE 447

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
             K   VL+ M   G  P+    + +++G  K G +++   +F  + ++K+  +  T+ Y
Sbjct: 448 MGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKI--KPTTVTY 505

Query: 594 DEIL 597
           + IL
Sbjct: 506 NIIL 509



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 100/475 (21%), Positives = 201/475 (42%), Gaps = 62/475 (13%)

Query: 115 RRVTPDLVA------EVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLF 168
           R + PD+V+       + K   +   A  F+  A K  G++ N  +Y  L +  +     
Sbjct: 215 RGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAK--GHRPNIVTYGILLHGYA----- 267

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
                      ++G  A+M+     M+ +    +   +T +I   A    +D  + +  E
Sbjct: 268 -----------TEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSE 316

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           M+   +  DV  Y TLI  LC+ GR+    + F +M   G+  +  +Y  LI+G    G 
Sbjct: 317 MQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGD 376

Query: 289 VGKACDLLKDLVDSGY-RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
           + KA +L+ +++++G  R ++  +NSI+  +C+  +   A+ +F++        D    N
Sbjct: 377 LVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFN 436

Query: 348 PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK 407
            L+     +G M   F +L  M      ++A +                  D F      
Sbjct: 437 TLIDGYCLVGEMGKAFSVLDAM------ISAGI----------------GPDTFT----- 469

Query: 408 GYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
                  YN L+    + G +   L LF +M    ++  +++++I +     +G  + A 
Sbjct: 470 -------YNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQ 522

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-CLGNVASGPTEFKYALTIL 526
           +  +++I      S+  YN + KGLC+    D A+++ +  C  NV    T     +  +
Sbjct: 523 KMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSM 582

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           +  +  E  K  ++ + ++  G  PN      +I  + K G++EEA  +F+++ +
Sbjct: 583 YTVQRREEAK--DLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEK 635



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/378 (20%), Positives = 154/378 (40%), Gaps = 31/378 (8%)

Query: 91  FITDAFRKNQFQWGPQVVTELSKLRRVTPD------LVAEVLKVENNPTLASKFFHWAGK 144
            + DA+ K        ++    + + ++PD      L++ + ++        KF    G 
Sbjct: 296 ILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGT 355

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDS-------------------QGR 183
             G + N   Y++L   +C +  +L +A + V E+M++                   +GR
Sbjct: 356 --GVQPNTVVYHSLIQGFC-THGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGR 412

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + +   I + ++    + D+  +  +I        +     V + M    +  D   Y T
Sbjct: 413 VMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNT 472

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+ G  K GR+  G  LFREM +  I      Y ++++GL   G+   A  +L +++  G
Sbjct: 473 LVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCG 532

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
               L  YN I+ GLCR    D+A  +F+     ++  + +T+N ++     + R +   
Sbjct: 533 TTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAK 592

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYNILMGAL 422
            L + +        A         + KE  +  A ++F  ++  G +    + N  +  L
Sbjct: 593 DLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAPCSRLLNDTIRTL 652

Query: 423 LEIGEVKKALYLFGKMRG 440
           LE GE+ KA     K+ G
Sbjct: 653 LEKGEIVKAGNYMSKVDG 670



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 116/281 (41%), Gaps = 50/281 (17%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK-LLAQM 369
           Y  ++ G CR ++ +     F   ++  L  D +  N +L C     R D+  K LL +M
Sbjct: 11  YGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKVLLRRM 70

Query: 370 EKL-----KFSVAADLEKFFEFLVGKEERIMMALDVFEEL-KGKGYSS--VPIYNILMGA 421
            +L      FS A  L++  +     + R   ALD+   + K +G  S  V  YN ++  
Sbjct: 71  TELGCVPDAFSYAIVLKRLCD-----DNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHG 125

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
             + G++ K                                   AC  ++++++   VP 
Sbjct: 126 FFKEGKIGK-----------------------------------ACNLYHEMMQQGFVPD 150

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V  +N +   LCK   +D A +L+R  + N    P +  Y   I      G  E+  ++ 
Sbjct: 151 VVTHNSIINALCKARAVDNAELLLRQMVDN-GVPPNKVTYTSMIHGYSTLGRWEEATKMF 209

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
            EMT  G  P+ V  ++ +  +CKHG  +EA ++F ++  +
Sbjct: 210 REMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAK 250


>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
          Length = 676

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 177/385 (45%), Gaps = 2/385 (0%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           E+ E+M R    P+++ +  +  VL  + +     +  E+M+++  + D++ Y TLI   
Sbjct: 289 EVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSY 348

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C+ GR+     L++ M   G++ D   Y  L+ GL  EG+V +A  L   +V  G   D+
Sbjct: 349 CRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDI 408

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             YN++I G C+  +  ++  L    + + ++PD  T   L+    + G+  +   L+ +
Sbjct: 409 VTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVE 468

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGE 427
           +++   S++ D+  +    + +E R   A ++ E +   G+   + IYN L+ +  +   
Sbjct: 469 LQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQDGHKXELEIYNELIKSFCQCDC 528

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           + +AL L  +M    ++ N  ++   J C       +E      +++    +P +     
Sbjct: 529 IAEALLLKMEMVDKEIKPNLATYRAVJGCLSRLSRSMEGESLVGEMVASGXLPDLEICRA 588

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L  G C+  +ID A  L+           TE   AL  +   + G+  + +E+ + M + 
Sbjct: 589 LFYGYCRENDIDKAESLLSFXAKEFQIHDTESFNALIRITSAK-GDIARSLEIQDMMLKM 647

Query: 548 GCPPNEVICSAIISGMCKHGTLEEA 572
           G  PN + C  +I G+ K   ++ A
Sbjct: 648 GLLPNPLTCKYVIDGLWKARRVDSA 672



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 100/478 (20%), Positives = 199/478 (41%), Gaps = 47/478 (9%)

Query: 125 VLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRI 184
           +L+ +++   A  FF+W     G + +  +Y  + + L+ +  F  A +          +
Sbjct: 152 LLRCQSDSFTALSFFNWVKNDLGLRPSTQNYCIIVHTLAWSRNFSQAIKF---------L 202

Query: 185 AEMLEIL------EKMRRNL------CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
            E++E++      E + +NL      C  D   +  +++       +   LR +  M + 
Sbjct: 203 CELVELVKDDLPGEDVFKNLILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRV 262

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
                V+    L+ GL K     R  E++ EM+  GI  +   + +L   L  +G  GK 
Sbjct: 263 GFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKV 322

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
              L+ + + G+  D+  YN++I   CR  + D A+ L+++  +  + PD  +   L+  
Sbjct: 323 NKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNG 382

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS 410
             + GR+    +L  +M  +   ++ D+  +   + G  KE ++  +  +  ++   G S
Sbjct: 383 LCKEGRVREAHQLFHRM--VHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGIS 440

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE-- 468
                +     +L  G  K+  +L      LNL V    F ++I   + S  I+  C   
Sbjct: 441 P----DSFTCWVLVEGYGKEGKFL----SALNLVVELQRFGVSISQDIYSYLIVALCREN 492

Query: 469 ----CHNKIIEMSQ---VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN-VASGPTEFK 520
                 N +  MSQ      +  YN L K  C+   I  A++L  + +   +      ++
Sbjct: 493 RPFAAKNLLERMSQDGHKXELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYR 552

Query: 521 YALTIL-HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
             J  L  + RS E E ++    EM   G  P+  IC A+  G C+   +++A  + +
Sbjct: 553 AVJGCLSRLSRSMEGESLV---GEMVASGXLPDLEICRALFYGYCRENDIDKAESLLS 607



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 163/398 (40%), Gaps = 38/398 (9%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVP 175
           T +++  VL  + +    +KF     +++G+  +  +YN L  +YC              
Sbjct: 305 TFNILTHVLCKDGDTGKVNKFLE-KMEEEGFDPDIVTYNTLINSYC-------------- 349

Query: 176 ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE 235
                +GR+ +   + + M R    PD+ +YTA++  L  E  +    +++  M    + 
Sbjct: 350 ----RKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLS 405

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            D++ Y TLI G CK G++     L  +M  NGI  D     VL+EG   EGK   A +L
Sbjct: 406 PDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNL 465

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV---- 351
           + +L   G      IY+ +I  LCR  +   A  L E   QD    +    N L+     
Sbjct: 466 VVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQDGHKXELEIYNELIKSFCQ 525

Query: 352 --CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGK 407
             C AE         LL +ME +   +  +L  +   J  + +  R M    +  E+   
Sbjct: 526 CDCIAE--------ALLLKMEMVDKEIKPNLATYRAVJGCLSRLSRSMEGESLVGEMVAS 577

Query: 408 G-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           G    + I   L        ++ KA  L           ++ SF+  I+     GDI  +
Sbjct: 578 GXLPDLEICRALFYGYCRENDIDKAESLLSFXAKEFQIHDTESFNALIRITSAKGDIARS 637

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            E  + +++M  +P+      +  GL K   +D+A ++
Sbjct: 638 LEIQDMMLKMGLLPNPLTCKYVIDGLWKARRVDSASLM 675



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 118/301 (39%), Gaps = 23/301 (7%)

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYK-LFEVT--VQDDLAPDFSTVNPLLVCCAE-- 355
           D G R     Y  I+  L   + F +A K L E+   V+DDL P       L++C  +  
Sbjct: 172 DLGLRPSTQNYCIIVHTLAWSRNFSQAIKFLCELVELVKDDL-PGEDVFKNLILCTEDCN 230

Query: 356 ---------------MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400
                          MGR+    +   +M ++ F        +    + K        +V
Sbjct: 231 WDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEV 290

Query: 401 FEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           +EE++  G + ++  +NIL   L + G+  K      KM     + + ++++  I  +  
Sbjct: 291 YEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCR 350

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
            G + +A   +  +     VP + +Y  L  GLCK G +  A  L    +    S P   
Sbjct: 351 KGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLS-PDIV 409

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            Y   I   C+ G+ ++   +L++M   G  P+   C  ++ G  K G    A  +   L
Sbjct: 410 TYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVEL 469

Query: 580 R 580
           +
Sbjct: 470 Q 470



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 81/183 (44%), Gaps = 4/183 (2%)

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           ++++L+ A L +G V++ L  F +M  +      ++ +  +   ++        E + ++
Sbjct: 235 VFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEM 294

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
                 P++  +N LT  LCK G+       +   +      P    Y   I   CR G 
Sbjct: 295 ERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEK-MEEEGFDPDIVTYNTLINSYCRKGR 353

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANT 590
            +    +   M + G  P+ V  +A+++G+CK G + EA ++F  +  R L   +   NT
Sbjct: 354 LDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNT 413

Query: 591 IVY 593
           +++
Sbjct: 414 LIH 416


>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 755

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 171/392 (43%), Gaps = 2/392 (0%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR  E +E+L +M      PDV +Y A I+        +  + + +EM    V  + + +
Sbjct: 299 GRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHF 358

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            + I+   KGG+  +  EL RE+   G+  D   +   I      G+  +A +LLK++  
Sbjct: 359 NSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPA 418

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              + D   YNS I    +  Q++ A +L        L P+  + N  +  C E GR   
Sbjct: 419 KRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQE 478

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMG 420
             +LL QM     +             GK  +   ALD+  ++K    +   I YN  + 
Sbjct: 479 GLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIA 538

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           A  + G  K+A+ L  +M G  L  + +S++ AI  + ++G    A E   ++      P
Sbjct: 539 ACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTP 598

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +V  YN + K   + GE + A+ L+++ L   A  P    Y L I    + G  E+ +++
Sbjct: 599 NVITYNSVIKACGRGGEWEKALDLLKE-LKETAVAPDLMSYNLAISACGKRGRWEEALDL 657

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           L EM  EG  P+ +  ++ I      G  E+A
Sbjct: 658 LREMPAEGLTPDVISYTSAIRACNAEGEWEKA 689



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 108/458 (23%), Positives = 191/458 (41%), Gaps = 21/458 (4%)

Query: 144 KQKGYKHNFASYN-ALAYCLSRNNLFRAADQVPELMDSQ------------------GRI 184
           +Q+G   N   YN A+  C S +    A   + E+ D +                  G+ 
Sbjct: 172 EQEGVSPNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQW 231

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
             ++ +L +M      PD   Y ++I     E      L V  EM    +  + ++Y   
Sbjct: 232 ERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMA 291

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I    + GR     E+ R+M+  G+  D   Y   I+   G G+   + DLL ++   G 
Sbjct: 292 IRACGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGV 351

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             +   +NS I    +  Q++KA +L        L PD ++ N  +  C + GR     +
Sbjct: 352 APNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALE 411

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
           LL +M   +    A          GK  +  MAL++  ++  KG + +V   NI + A  
Sbjct: 412 LLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACG 471

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           E G  ++ L L  +M    L  N ++++ AI+   + G   +A +   K+ E++  P   
Sbjct: 472 ERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSI 531

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            YN       K G    A+ L+R+  G   + P    Y   I    ++G+ E+ +E+L +
Sbjct: 532 TYNSAIAACSKRGRWKEAVALLREMPGQGLT-PDVISYTAAIDAYGKNGQWERAVELLRQ 590

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           M  +G  PN +  +++I    + G  E+A  +   L+E
Sbjct: 591 MPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKE 628



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 168/390 (43%), Gaps = 16/390 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  + +E+L ++      PD  ++ + I            L + +EM    ++ D ++Y
Sbjct: 369 GQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISY 428

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            + I    KGG+     EL R+M   G+  +     + I      G+  +  +LL+ +  
Sbjct: 429 NSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPA 488

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++  YNS I    +  Q++KA  L     +  + PD  T N  +  C++ GR   
Sbjct: 489 QGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKE 548

Query: 362 FFKLLAQM-------EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVP 413
              LL +M       + + ++ A D         GK  +   A+++  ++  KG + +V 
Sbjct: 549 AVALLREMPGQGLTPDVISYTAAIDA-------YGKNGQWERAVELLRQMPTKGLTPNVI 601

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN ++ A    GE +KAL L  +++   +  + +S+++AI    + G   EA +   ++
Sbjct: 602 TYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREM 661

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
                 P V +Y    +     GE + A+ L+ + +G     PT   Y+L I    + G 
Sbjct: 662 PAEGLTPDVISYTSAIRACNAEGEWEKALGLL-NLMGAHGVSPTATSYSLAIEACGKGGR 720

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
            E+ + ++ EM Q G     +  S I+  +
Sbjct: 721 REEAVCLVREMAQRGLSHRNISNSLIVEAL 750



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 115/287 (40%), Gaps = 36/287 (12%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR  E LE+L +M      P+V  Y + I+        +  L +  +MK+  +  D + 
Sbjct: 473 RGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSIT 532

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y + I    K GR      L REM   G+  D   Y   I+     G+  +A +LL+ + 
Sbjct: 533 YNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMP 592

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   ++  YNS+I    R  +++KA  L +   +  +APD  + N  +  C + GR +
Sbjct: 593 TKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWE 652

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
                                               ALD+  E+  +G +  V  Y   +
Sbjct: 653 E-----------------------------------ALDLLREMPAEGLTPDVISYTSAI 677

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
            A    GE +KAL L   M    +   + S+S+AI+   + G   EA
Sbjct: 678 RACNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRREEA 724



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 87/195 (44%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR  E + +L +M      PDV +YTA I         +  + +  +M    +  +V+ 
Sbjct: 543 RGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVIT 602

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y ++I    +GG   +  +L +E+KE  +  D   Y + I      G+  +A DLL+++ 
Sbjct: 603 YNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREMP 662

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D+  Y S I       +++KA  L  +     ++P  ++ +  +  C + GR +
Sbjct: 663 AEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRRE 722

Query: 361 NFFKLLAQMEKLKFS 375
               L+ +M +   S
Sbjct: 723 EAVCLVREMAQRGLS 737



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 124/332 (37%), Gaps = 72/332 (21%)

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS-GYRADLGIYNSIIGGL 318
           +  EMKE G++   + Y   I     +G+  KA +LL+++ +  G   ++  YNS I   
Sbjct: 132 ILDEMKEGGVVCAHS-YTTAITTCGRQGQWEKALELLREIPEQEGVSPNVFCYNSAIEAC 190

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
               Q++ A  L       ++ PD  + N  +  C   G+ +    LL +M  +  +  A
Sbjct: 191 GSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDA 250

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM 438
                                               YN ++    + G+ K+AL +  +M
Sbjct: 251 I----------------------------------TYNSVITGCGKEGQWKEALSVLTEM 276

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
               L   ++S+++AI+    SG   EA E   ++      P V +Y             
Sbjct: 277 SAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISY------------- 323

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           DAA   ++ C G                     G+ E  +++L+EM   G  PN +  ++
Sbjct: 324 DAA---IKACGGG--------------------GQWETSVDLLDEMAGRGVAPNTIHFNS 360

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            I    K G  E+A ++   +    L  +A +
Sbjct: 361 AIVACGKGGQWEKAVELLREVTALGLTPDATS 392



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 5/170 (2%)

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PSVAA 484
           G+ ++AL +  +M+   + V + S++ AI      G   +A E   +I E   V P+V  
Sbjct: 124 GKWREALGILDEMKEGGV-VCAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNVFC 182

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN   +      + + A+ L+R+ + +    P E  Y   I    R G+ E++I +L EM
Sbjct: 183 YNSAIEACGSGDQWEIAVSLLRE-MADREVVPDEISYNSAIKACGRGGQWERVIGLLREM 241

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
              G  P+ +  +++I+G  K G  +EA  V T +  + L  E  TI Y+
Sbjct: 242 PSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPE--TISYN 289



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 65/160 (40%), Gaps = 20/160 (12%)

Query: 146 KGYKHNFASYNALAYCLSRNNLF-RAADQVPELMDS------------------QGRIAE 186
           KG   N  +YN++     R   + +A D + EL ++                  +GR  E
Sbjct: 594 KGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEE 653

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
            L++L +M      PDV +YT+ IR   AE   +  L +   M    V     +Y   I 
Sbjct: 654 ALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIE 713

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
              KGGR      L REM + G L  R I   LI   +G+
Sbjct: 714 ACGKGGRREEAVCLVREMAQRG-LSHRNISNSLIVEALGD 752


>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
 gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
          Length = 735

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 134/608 (22%), Positives = 245/608 (40%), Gaps = 104/608 (17%)

Query: 89  ARFITDAFRKNQFQ--WGPQVVTELSKL-RRVTPDLVAEVLKVENNPTLAS--KFFHWAG 143
           +R + D  R  + +  W  ++  +L  L R +TP  V  VL+ +      +  +FF WA 
Sbjct: 58  SRLVRDTCRLLELRDSWSAKLEAQLRHLLRAMTPSQVRAVLRAQAQRDARAAFEFFRWAD 117

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM-------------------DSQGRI 184
           +Q  Y+H    ++ +   LSR  L   A +V  LM                      G++
Sbjct: 118 RQWKYRHAPEVFDEMLVLLSRTRLHDPARRVMRLMIRRGMPRGTRQFAHLMLSYSRAGKL 177

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
              + +L+ M+++ C PD+      + VL     +D  L   E M++  V+ DV+ Y  L
Sbjct: 178 RSAMRVLQLMQKDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGVDPDVVTYNCL 237

Query: 245 IMGLCKGGRVVRGHELFREMKEN-----------------------------------GI 269
           I GLC   R+V   E+   M +N                                   GI
Sbjct: 238 IKGLCGARRIVDALEMISSMLQNGCLPDKISYFTVMSFLCKEKRVADVQNLLERMSDAGI 297

Query: 270 LIDRAIYGVLIEGL-------------------------VG----------EGKVGKACD 294
             D+  Y +LI GL                         VG           G++ +A +
Sbjct: 298 FPDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLNGRMAEAKE 357

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           ++ +++  G R D+  Y++++ G CR+ + D+A K+ +   ++   P+  T   LL    
Sbjct: 358 IIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLC 417

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY--SSV 412
           ++G+    ++LL + E+  ++ +A           +E ++  + DV  ++  KG+  ++V
Sbjct: 418 KVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQMLQKGFFPTTV 477

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
            I N+L+ AL    +   A     + +     +N ++F+  I      GD+  A    + 
Sbjct: 478 EI-NLLIHALCNERKPADAKDFMEQCQSKGCFINVVNFTTVIHGFSRQGDLESALSLLDD 536

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           +   ++ P V  Y  +   L + G++  A  LV   L N    PT   Y   I   C  G
Sbjct: 537 MYLTNRHPDVVTYTVVVDALGRKGKMKEATSLVEKML-NRGLHPTPVTYRTVIHRYCEKG 595

Query: 533 EAEKIIEVLNEM-TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT- 590
             E ++ +L++M  +EG        + +I  +C  G L EA  + + +       +A T 
Sbjct: 596 AVEDLLNLLDKMLAKEGFSSAY---NQVIEKLCAFGKLSEANNLLSKVLRTASKRDAQTC 652

Query: 591 -IVYDEIL 597
            I+ D  L
Sbjct: 653 HILMDSFL 660


>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Brachypodium distachyon]
          Length = 547

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 204/485 (42%), Gaps = 94/485 (19%)

Query: 105 PQVVTELSKLR-RVTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCL 162
           P++ + L  L   ++P+LVAEVL+ + N   LA  FF WA +Q+G+++   S++ L   L
Sbjct: 112 PRIASALDALGVNMSPELVAEVLRNLSNAGILALAFFRWAERQQGFRYTAESFHNLIEAL 171

Query: 163 SRNNLFRAADQVPELMDSQGRIAEMLEILEKMR-RNLCKPDVFAYTAMIRVLAAERNLDA 221
            +   FR                 +  ++E MR R L   D F    ++R  A  R +  
Sbjct: 172 GKIKQFRL----------------VWSLVEAMRCRGLLSKDTFRL--IVRRYARARKVKE 213

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI-DRAIYGVLI 280
            +  +E+M    ++AD+  Y  LI  L K  +V + H +F+EMK NG  + D   Y VL+
Sbjct: 214 AVETFEKMSSFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLM 273

Query: 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
           EG   E  +     + ++++D+G + D+  Y ++I   C+  + D+A K+F     +   
Sbjct: 274 EGWGHEKDLLMLKSVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDEAIKVFREMEANGCM 333

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400
           P     +P + C    G                              +G EER+  AL  
Sbjct: 334 P-----SPHVYCMLING------------------------------LGSEERLDEALKY 358

Query: 401 FEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           FE  K  G+   VP  N ++GA     + + A  +  +MR   +  N+ ++ I +Q  ++
Sbjct: 359 FELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIK 418

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           S  I E                  AYN   +                  +G     P   
Sbjct: 419 SQKIEE------------------AYNVFQR------------------MGMEGCEPQLN 442

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            Y + +   C +   +  ++V  +M ++G  P   + S++I+G+C    LEEA   F  +
Sbjct: 443 TYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACVYFQEM 502

Query: 580 RERKL 584
            ++ +
Sbjct: 503 LDKGI 507



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 97/439 (22%), Positives = 178/439 (40%), Gaps = 76/439 (17%)

Query: 165 NNLFRAADQVPELMDSQG--RIAEML---------EILEKMRRNLCKPDVFAYTAMIRVL 213
           +++   A++V  ++ SQ   RIA  L         E++ ++ RNL    + A  A  R  
Sbjct: 93  SDVSEVAERVCRVVSSQPEPRIASALDALGVNMSPELVAEVLRNLSNAGILAL-AFFRW- 150

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
            AER      R   E   +L+EA         +G  K  R+V    L   M+  G+L  +
Sbjct: 151 -AERQQG--FRYTAESFHNLIEA---------LGKIKQFRLV--WSLVEAMRCRGLL-SK 195

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF-E 332
             + +++       KV +A +  + +   G +ADL  YN +I  L + KQ  KA+ +F E
Sbjct: 196 DTFRLIVRRYARARKVKEAVETFEKMSSFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKE 255

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392
           +       PD  T   L         M+ +                          G E+
Sbjct: 256 MKRNGRFVPDLKTYTVL---------MEGW--------------------------GHEK 280

Query: 393 RIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
            ++M   V++E+   G    V  Y  L+ +  + G+  +A+ +F +M     E N    S
Sbjct: 281 DLLMLKSVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDEAIKVFREM-----EANGCMPS 335

Query: 452 IAIQCHVESG----DILEACECHNKIIEMSQVP-SVAAYNCLTKGLCKIGEIDAAMMLVR 506
             + C + +G    + L+    + ++ + S  P  V   N +    C+  +   A  +V 
Sbjct: 336 PHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMV- 394

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
           D +     GP    Y + + ++ +S + E+   V   M  EGC P     + ++   C +
Sbjct: 395 DEMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQLNTYTMMVGMFCSN 454

Query: 567 GTLEEARKVFTNLRERKLL 585
             ++ A KV+  ++E+ +L
Sbjct: 455 ERVDMALKVWKQMKEKGVL 473


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 176/379 (46%), Gaps = 10/379 (2%)

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
            V+ +V+ Y  +I  LC+ G V  G E + EM  NG+  +   YG LI GL G GK  + 
Sbjct: 180 FVKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEG 239

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
             L+ +++  G    + ++  +I GLC+     +A ++F+  V     P+  T   L+  
Sbjct: 240 FGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGG 299

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS 410
               G +D   +L   + +  F    D+  +  F+ G  K  R+  A+ VF+E+  +G  
Sbjct: 300 YCLKGNVDMARELFDAIGEWGFK--RDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVV 357

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
            ++  YN L+  L + GEV  A  +   M    L  + ++  I +    +S  + +A   
Sbjct: 358 PNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILL 417

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHV 528
            N+++E    P V +Y  L  G C    +  AM L+RD  L N+   P    Y+  I  +
Sbjct: 418 FNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLV--PHIVTYSCLIDGL 475

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
           CRSG       +LNEM  +G  P+ +  S ++  + K   L+EA  +F  + +R L  E 
Sbjct: 476 CRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGL--EP 533

Query: 589 NTIVYDEILIEHMKKKTAD 607
           + + Y  ++  + K +  D
Sbjct: 534 DVMCYTIMIDGYCKSERID 552



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/451 (21%), Positives = 186/451 (41%), Gaps = 53/451 (11%)

Query: 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTA 208
           K N   Y+ +  CL RN                G + E  E   +M  N   P+ F Y +
Sbjct: 182 KGNVVMYSIVIDCLCRN----------------GFVDEGFEFYNEMMGNGVCPNEFTYGS 225

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           +IR L           + +EM +  ++  V  +  LI GLCK G +V   E+F EM   G
Sbjct: 226 LIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRG 285

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
              +      L+ G   +G V  A +L   + + G++ D+  YN  I G C+V +   A 
Sbjct: 286 YEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAV 345

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
           ++F+   ++ + P+  T N L+ C  + G +   ++++  M +   +             
Sbjct: 346 RVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLT------------- 392

Query: 389 GKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
                                  +    IL+  L +   + +A+ LF ++    L  +  
Sbjct: 393 ---------------------PDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVW 431

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           S++I I     S  + EA      +   + VP +  Y+CL  GLC+ G I  A  L+ + 
Sbjct: 432 SYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNE- 490

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
           +      P    Y++ +  + +    ++ + + N+M + G  P+ +  + +I G CK   
Sbjct: 491 MHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSER 550

Query: 569 LEEARKVFTNLRERKLLTE--ANTIVYDEIL 597
           ++EA  +F  +  + L+ +    TI+++ + 
Sbjct: 551 IDEAINLFREMHMKNLVPDIVTYTILFNAVF 581



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 148/320 (46%), Gaps = 5/320 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G + E  E+ ++M     +P++   TA++     + N+D    +++ + +   + DV  
Sbjct: 268 NGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWT 327

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y   I G CK GRV     +F EM   G++ +   Y  LI+ L   G+V  A +++K + 
Sbjct: 328 YNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMH 387

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            SG   D+     ++ GLC+ K+ D+A  LF   V+  L PD  +   L+  C    RM 
Sbjct: 388 RSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMG 447

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
               LL  M  LK ++   +  +   + G  +  RI  A  +  E+  KG       Y+I
Sbjct: 448 EAMNLLRDMH-LK-NLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSI 505

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ AL +   + +A++LF +M    LE + + ++I I  + +S  I EA     ++   +
Sbjct: 506 LLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKN 565

Query: 478 QVPSVAAYNCLTKGLCKIGE 497
            VP +  Y  L   + K G 
Sbjct: 566 LVPDIVTYTILFNAVFKSGS 585


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 134/582 (23%), Positives = 236/582 (40%), Gaps = 76/582 (13%)

Query: 35  NRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARF--I 92
           N  S    +S S  H  PP ++Q  D             S        RH  PI +F  I
Sbjct: 17  NFSSFLQNSSHSHFHSQPP-SIQNVD----------DAVSQFNRMLCMRHTPPIIQFNKI 65

Query: 93  TDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQK----GY 148
            D+F K +       ++   +L+ + PDL+   + +     +    F ++   K    GY
Sbjct: 66  LDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGY 125

Query: 149 KHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
             +  + N L    CL                  +G++ + L   +K+     + +  +Y
Sbjct: 126 PPDTVTLNTLIKGLCL------------------KGQVKKALHFHDKLLAQGFQLNQVSY 167

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +I  +    +    +++  ++   L + +V  Y T+I  LCK   V   + LF EM  
Sbjct: 168 ATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTV 227

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            GI  D   Y  LI G   EGK+ +A  LL ++V      ++  YN ++  LC+  +  +
Sbjct: 228 KGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKE 287

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A  +  V ++  + PD  T + L         MD +F L+ +++K               
Sbjct: 288 AKSVLAVMLKACVKPDVITYSTL---------MDGYF-LVYEVKK--------------- 322

Query: 387 LVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
                     A  VF  +   G +  V  Y IL+    +   V +AL LF +M   N+  
Sbjct: 323 ----------AQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVP 372

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
             +++S  I    +SG I    +  +++ +  Q   V  Y+ L  GLCK G +D A+ L 
Sbjct: 373 GIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALF 432

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
              + +    P  F + + +  +C+ G  +   EV  ++  +G   N    + +I+G CK
Sbjct: 433 NK-MKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCK 491

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
            G LEEA  + + + +   +  A T  ++ I+I   KK   D
Sbjct: 492 QGLLEEALTMLSKMEDNGCIPNAFT--FETIIIALFKKDEND 531



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 186/429 (43%), Gaps = 10/429 (2%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PD+     +I        +     V  ++ K     D +   TLI GLC  G+V +   
Sbjct: 91  QPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALH 150

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
              ++   G  +++  Y  LI G+   G    A  LL+ +     + ++ +Y++II  LC
Sbjct: 151 FHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALC 210

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           + +   +AY LF       ++ D  T + L+      G++     LL +M     +    
Sbjct: 211 KYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVY 270

Query: 380 LEKFFEFLVGKEERIMMALDVFE-ELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM 438
                   + KE ++  A  V    LK      V  Y+ LM     + EVKKA ++F  M
Sbjct: 271 TYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAM 330

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
             + +  +  +++I I    ++  + EA     ++ + + VP +  Y+ L  GLCK G I
Sbjct: 331 SLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRI 390

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
                L+ D + +         Y+  I  +C++G  ++ I + N+M  +   PN    + 
Sbjct: 391 PYVWDLI-DEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTI 449

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGL 618
           ++ G+CK G L++A++VF +L  +      N   Y+ ++  H K+   +  L+ L     
Sbjct: 450 LLDGLCKGGRLKDAQEVFQDLLTKGY--HLNVYTYNVMINGHCKQGLLEEALTML----- 502

Query: 619 ESKLKAKGC 627
            SK++  GC
Sbjct: 503 -SKMEDNGC 510



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 91/186 (48%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + E L + ++M +    P +  Y+++I  L     +     + +EM+     ADV+ Y +
Sbjct: 355 VDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSS 414

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           LI GLCK G + R   LF +MK+  I  +   + +L++GL   G++  A ++ +DL+  G
Sbjct: 415 LIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 474

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
           Y  ++  YN +I G C+    ++A  +      +   P+  T   +++   +    D   
Sbjct: 475 YHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAE 534

Query: 364 KLLAQM 369
           KLL QM
Sbjct: 535 KLLRQM 540



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 80/150 (53%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI  + +++++MR      DV  Y+++I  L    +LD  + ++ +MK   +  ++  +
Sbjct: 388 GRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTF 447

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLCKGGR+    E+F+++   G  ++   Y V+I G   +G + +A  +L  + D
Sbjct: 448 TILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMED 507

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           +G   +   + +II  L +  + DKA KL 
Sbjct: 508 NGCIPNAFTFETIIIALFKKDENDKAEKLL 537


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 177/410 (43%), Gaps = 13/410 (3%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +  +G + E  E++E MR +  K   F Y  +I  L A   +     +  EM+ + +   
Sbjct: 251 LTRKGDLEEAAELVEGMRLSK-KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPT 309

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ Y  +I GL + G V      F EM+  G+L D   Y  L+ G    G + +A  L  
Sbjct: 310 VVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFG 369

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-----VC 352
           DL  +G    +  YN  I G CR+   ++A  L E   +    P+  T   L+     VC
Sbjct: 370 DLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVC 429

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSV 412
              M R   FF  +          A +     E ++G   R   AL++ E L  +G SS 
Sbjct: 430 SLAMAR--EFFDEMLSKGLQPDCFAYNTRICAELILGDIAR---ALELREVLMLEGISSD 484

Query: 413 PI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
            + YNIL+  L + G +K A  L  KM    L+ + ++++  I  H E G + EA +  N
Sbjct: 485 TVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFN 544

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
            +I    +PS   +  +    C+ G + +A    R  L      P E  Y + I  +CR 
Sbjct: 545 NMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVE-PNEITYNVLIHALCRM 603

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           G  +      +EM + G   N+   + +I G CK G  E+A + +  + +
Sbjct: 604 GRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQ 653



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 188/428 (43%), Gaps = 20/428 (4%)

Query: 177 LMDS---QGRIAEMLEILEKM--RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK 231
           L+DS   +GR  ++  +L++M  R + C P+   Y  +I  L  + +L+    + E M+ 
Sbjct: 210 LLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRL 269

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
              +A    Y  LI GL   G V + ++L  EM+  GI+     Y  +I GL+  G V  
Sbjct: 270 S-KKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEA 328

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A     ++   G   D+  YNS++ G C+     +A  LF    +  LAP   T N  + 
Sbjct: 329 AQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRID 388

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGY 409
               +G ++    L  +M +       ++  +   + G      + MA + F+E+  KG 
Sbjct: 389 GYCRLGDLEEARILKEEMGEQ--GCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGL 446

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
                 YN  + A L +G++ +AL L   +    +  ++++++I I    ++G++ +A E
Sbjct: 447 QPDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKE 506

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTI 525
              K++     P    Y CL    C+ G +  A    R    N+ S    P+   + + I
Sbjct: 507 LQMKMVSNGLQPDCITYTCLIHAHCERGLLREA----RKIFNNMISDGLLPSAVTFTVII 562

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
              CR G          +M +EG  PNE+  + +I  +C+ G  + A   F  + ER L+
Sbjct: 563 HAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLV 622

Query: 586 TEANTIVY 593
             AN   Y
Sbjct: 623 --ANKYTY 628



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 176/441 (39%), Gaps = 71/441 (16%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L    +M  +   PDV     ++R L      D    V EEM +  +E  ++ Y TL+  
Sbjct: 154 LSAFREMASHGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDS 213

Query: 248 LCKGGRVVRGHELFREM--KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
             K GR  +   L +EM  + +G L +   Y V+I GL  +G + +A +L++ +  S  +
Sbjct: 214 FLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSK-K 272

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
           A    YN +I GL       K Y L      + + P   T N ++    + G        
Sbjct: 273 ASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSG-------- 324

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEI 425
           L +  ++KF+               E R M  L             V  YN L+    + 
Sbjct: 325 LVEAAQVKFA---------------EMRAMGLL-----------PDVITYNSLLNGYCKA 358

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G +K+AL LFG +R   L    L+++I I  +   GD+ EA     ++ E   +P+V  Y
Sbjct: 359 GNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTY 418

Query: 486 NCLTKGLCKIGEIDAAM-----MLVR----DC------------LGNVASG--------- 515
             L KG   +  +  A      ML +    DC            LG++A           
Sbjct: 419 TILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLML 478

Query: 516 ----PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
                    Y + I  +C++G  +   E+  +M   G  P+ +  + +I   C+ G L E
Sbjct: 479 EGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLRE 538

Query: 572 ARKVFTNLRERKLLTEANTIV 592
           ARK+F N+    LL  A T  
Sbjct: 539 ARKIFNNMISDGLLPSAVTFT 559



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 142/369 (38%), Gaps = 20/369 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNL----------FRAADQVPELMD---------SQGRI 184
           + +G      +YNA+ + L ++ L           RA   +P+++            G +
Sbjct: 302 ENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNL 361

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E L +   +RR    P V  Y   I       +L+    + EEM +     +V  Y  L
Sbjct: 362 KEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTIL 421

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + G      +    E F EM   G+  D   Y   I   +  G + +A +L + L+  G 
Sbjct: 422 MKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEGI 481

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
            +D   YN +I GLC+      A +L    V + L PD  T   L+    E G +    K
Sbjct: 482 SSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARK 541

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALL 423
           +   M       +A           +   +  A   F ++  +G     I YN+L+ AL 
Sbjct: 542 IFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALC 601

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
            +G  + A + F +M    L  N  ++++ I  + + G+  +A   + ++ +    P   
Sbjct: 602 RMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYL 661

Query: 484 AYNCLTKGL 492
            +  L KG 
Sbjct: 662 THKALVKGF 670


>gi|414868428|tpg|DAA46985.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
          Length = 683

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 124/541 (22%), Positives = 230/541 (42%), Gaps = 71/541 (13%)

Query: 103 WGPQVVTELSK-LRRVTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAY 160
           W  ++ +E +  LR++ P  V   L+     P L  + + WA +   +  +FA   ++  
Sbjct: 58  WFARINSEFAAPLRQLGPRFVVRALQHAAGEPLLCVRLYVWASR---FGQHFARDRSVRR 114

Query: 161 CLSRNNLFRA---------AD------QVPE-----LMDSQGRIA---EMLEILEKMRRN 197
            L    L R          AD      +V E     L++S GR+       E+  ++ R 
Sbjct: 115 ALGDALLRRGPVVLSAALVADVRSCGCEVSEELLCALVESWGRLGLAHYAHEVFVQVPRL 174

Query: 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
             +P    Y A+I        +DA    +++M  D    D   Y TL+ G+C+ G V   
Sbjct: 175 GLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEA 234

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
             L ++M+  GI  +   Y +L++G     +V +A  +L+ + + G  A    Y S++ G
Sbjct: 235 LRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEATYRSLVHG 294

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK------ 371
             R  + ++AY++    ++ D        + LL C ++        +L  +M K      
Sbjct: 295 AFRCLEKERAYRMLSEWIESDPTLHSIAYHTLLYCLSKNDMDKEAVELAKKMSKRGYLLG 354

Query: 372 -LKFSV----------AADLEKFFEFLV------GKEERIMM------------ALDVFE 402
              FS+          ++DL +  +  +      G +  IM+            A   F 
Sbjct: 355 STTFSIVIPCAVKVLESSDLCELVDDFIKKGGNLGFDMYIMIIKSFLRCKDISKANKYFS 414

Query: 403 ELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           ++   G  SSV  YNI++    + GEV++AL     M+      N ++F+  I  +++ G
Sbjct: 415 QMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLG 474

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTE 518
           ++ +A      ++E   +P V  +  L  GLC   ++D A     +C   ++     P  
Sbjct: 475 NVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAF----NCFSEMSEWGVRPNV 530

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
             Y + I  +C +G   K IE+LN+M  +G  P+    +A I   C+   +E+A+K+F +
Sbjct: 531 QTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFND 590

Query: 579 L 579
           +
Sbjct: 591 M 591



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 85/396 (21%), Positives = 148/396 (37%), Gaps = 71/396 (17%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK--------- 231
           +G + E L ++++M R   +P+V  YT ++        ++  + V E MK+         
Sbjct: 228 RGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEAT 287

Query: 232 ----------------------DLVEAD----VMAYVTLIMGLCKGGRVVRGHELFREMK 265
                                 + +E+D     +AY TL+  L K        EL ++M 
Sbjct: 288 YRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIAYHTLLYCLSKNDMDKEAVELAKKMS 347

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           + G L+    + ++I   V   +    C+L+ D +  G      +Y  II    R K   
Sbjct: 348 KRGYLLGSTTFSIVIPCAVKVLESSDLCELVDDFIKKGGNLGFDMYIMIIKSFLRCKDIS 407

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS---------- 375
           KA K F   V D L     + N ++ C A+ G ++   + +  M++  FS          
Sbjct: 408 KANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLI 467

Query: 376 -----------------------VAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS 410
                                  +  D+  F   + G     ++  A + F E+   G  
Sbjct: 468 NGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVR 527

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
            +V  YN+L+  L   G V KA+ L  KM+   +  ++ SF+  I        I +A + 
Sbjct: 528 PNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKL 587

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
            N +      P    YN L K LC    +D A  ++
Sbjct: 588 FNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEII 623



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 90/191 (47%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +   LE ++ M+ +   P++  +  +I       N+       + + +  +  DV+ +
Sbjct: 439 GEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMPDVITF 498

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI GLC   ++      F EM E G+  +   Y VLI GL   G V KA +LL  +  
Sbjct: 499 TSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELLNKMKM 558

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   +N+ I   CR+++ +KA KLF    +  ++PD  T N L+    +  R+D 
Sbjct: 559 DGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKALCDERRVDE 618

Query: 362 FFKLLAQMEKL 372
             +++  ME +
Sbjct: 619 AKEIILAMESI 629



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 140/339 (41%), Gaps = 6/339 (1%)

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
            HE+F ++   G+    AIY  +I   V  G V  A    + +   G R D   YN+++ 
Sbjct: 164 AHEVFVQVPRLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVH 223

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           G+CR    D+A +L +   +  + P+  T   L+       R++    +L +M++   S 
Sbjct: 224 GVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKGVSA 283

Query: 377 AADLEKFF---EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALY 433
                +      F   ++ER    L  + E     +S    Y+ L+  L +    K+A+ 
Sbjct: 284 TEATYRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIA--YHTLLYCLSKNDMDKEAVE 341

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           L  KM      + S +FSI I C V+  +  + CE  +  I+         Y  + K   
Sbjct: 342 LAKKMSKRGYLLGSTTFSIVIPCAVKVLESSDLCELVDDFIKKGGNLGFDMYIMIIKSFL 401

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           +  +I  A       + +      E  Y + I    ++GE E+ +E +  M + G  PN 
Sbjct: 402 RCKDISKANKYFSQMVSDGLLSSVE-SYNIVIDCFAKAGEVERALETIKVMQESGFSPNL 460

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           V  + +I+G  K G + +A+     + E  L+ +  T  
Sbjct: 461 VTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFT 499



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 105/235 (44%), Gaps = 14/235 (5%)

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V +Y  +I   A    ++  L   + M++     +++ + TLI G  K G V       +
Sbjct: 425 VESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLK 484

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            + E+G++ D   +  LI+GL    ++  A +   ++ + G R ++  YN +I GLC   
Sbjct: 485 MVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAG 544

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
              KA +L      D + PD  + N  ++    M +++   KL   M   ++ V+ D   
Sbjct: 545 HVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMS--RYGVSPDSYT 602

Query: 383 FFEFL--------VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVK 429
           +   +        V + + I++A++    +  K ++  P+    +GAL ++G  +
Sbjct: 603 YNALIKALCDERRVDEAKEIILAMESISCIGTKQHTYWPV----VGALTKMGRFR 653



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 2/173 (1%)

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L  ALL  G V  +  L   +R    EV+       ++     G    A E   ++  + 
Sbjct: 116 LGDALLRRGPVVLSAALVADVRSCGCEVSEELLCALVESWGRLGLAHYAHEVFVQVPRLG 175

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             PS A YN +     + G +DAA +  +    +    P  F Y   +  VCR G  ++ 
Sbjct: 176 LRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPAD-GCRPDCFTYNTLVHGVCRRGIVDEA 234

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL-LTEAN 589
           + ++ +M + G  PN V  + ++ G C    +EEA  V   ++E+ +  TEA 
Sbjct: 235 LRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEAT 287



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 16/120 (13%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G + N  +YN L + L                 S G +++ +E+L KM+ +   PD +++
Sbjct: 525 GVRPNVQTYNVLIHGLC----------------SAGHVSKAIELLNKMKMDGITPDAYSF 568

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
            A I      R ++   +++ +M +  V  D   Y  LI  LC   RV    E+   M+ 
Sbjct: 569 NAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEIILAMES 628


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 173/387 (44%), Gaps = 6/387 (1%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           E+  ++ R+  + +V+    M+  L  +   D       EM+ + + AD++ Y TLI   
Sbjct: 104 EVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAY 163

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C+ G +    E+   M + G+      Y  +I GL  +G+  +A  +L ++++ G   D 
Sbjct: 164 CREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDT 223

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             YN+++   CR   F +A ++F   ++  + PD  + + L+   +    +D        
Sbjct: 224 TTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRD 283

Query: 369 MEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEI 425
           M+  KF +  D   +   + G  +   ++ AL + +E+  +G    V  YN ++  L + 
Sbjct: 284 MK--KFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKE 341

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
             +  A  LF +M       +  +F+  I  H + G++ +A      + + +  P + AY
Sbjct: 342 KMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAY 401

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           N L  G CK+GE++ A  L  D + +    P    Y + I   C  G   +   + + M 
Sbjct: 402 NTLIDGFCKVGEMEKASEL-WDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMI 460

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEA 572
           ++G  P  V C+ +I G C+ G   +A
Sbjct: 461 EKGIKPTLVTCNTVIKGYCRSGDSSKA 487



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/457 (23%), Positives = 191/457 (41%), Gaps = 54/457 (11%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLF-RAADQVPELMD------------------SQGRIA 185
            KG K +  +YNA+   L +   + RA   + E+++                   +   +
Sbjct: 181 DKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFS 240

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E  EI  +M R    PD+ +++++I V +  R+LD  L  + +MKK  +  D + Y  L+
Sbjct: 241 EAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLM 300

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G C+ G ++   ++  EM E G ++D   Y  ++ GL  E  +  A  L  ++V+ G  
Sbjct: 301 HGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGAL 360

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D   + ++I G C+     KA  LF    Q ++ PD    N L+         D F K+
Sbjct: 361 PDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLI---------DGFCKV 411

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEI 425
                        ++EK  E   G   R             K + +   Y IL+ A   +
Sbjct: 412 ------------GEMEKASELWDGMISR-------------KIFPNHITYGILINAYCSV 446

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G V +A  L+  M    ++   ++ +  I+ +  SGD  +A E   ++I     P   +Y
Sbjct: 447 GHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISY 506

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           N L  G  +   +D A + +   +      P    Y + +   CR G  ++   VL +M 
Sbjct: 507 NTLINGFVREDNMDKAFLWINK-MEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMI 565

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           ++G  P+    +A+I+G      L EA +    + +R
Sbjct: 566 EKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQR 602



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 102/448 (22%), Positives = 183/448 (40%), Gaps = 76/448 (16%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN---------------------- 218
           +G + E  EI+  M     KP +F Y A+I  L  +                        
Sbjct: 166 EGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTT 225

Query: 219 -----LDACLR--------VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
                +++C R        ++ EM +  V  D++++ +LI    +   + +    FR+MK
Sbjct: 226 YNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMK 285

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           + G++ D  IY VL+ G    G + +A  +  ++++ G   D+  YN+I+ GLC+ K   
Sbjct: 286 KFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLT 345

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
            A KLF+  V+    PDF T   L+    + G M     L   M +              
Sbjct: 346 DADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIK---------- 395

Query: 386 FLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
                                     +  YN L+    ++GE++KA  L+  M    +  
Sbjct: 396 ------------------------PDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFP 431

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N +++ I I  +   G + EA    + +IE    P++   N + KG C+ G+   A    
Sbjct: 432 NHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKA---- 487

Query: 506 RDCLGN-VASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            + LG  +A G  P    Y   I    R    +K    +N+M +EG  P+ +  + +++G
Sbjct: 488 DEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNG 547

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANT 590
            C+ G ++EA  V   + E+ +  + +T
Sbjct: 548 FCRQGRMQEAELVLRKMIEKGINPDRST 575



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 190/431 (44%), Gaps = 19/431 (4%)

Query: 177 LMDSQGRIAEML--------EILEKMRRNLCK---PDVFAYTAMIRVLAAERNLDACLRV 225
           L D+Q  I  M+        E++E +  ++C     +   +  +IR     R L      
Sbjct: 11  LSDAQALILRMIRRSGVSRVEVVEALVSSMCGNCGTNNLVFDLLIRTYVQARKLREGTEA 70

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285
           +  ++       + A  +L+ GL K   V    E+ RE+  +GI ++     +++  L  
Sbjct: 71  FRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCK 130

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           +GK       L ++  +G  AD+  YN++IG  CR    ++A+++        L P   T
Sbjct: 131 DGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFT 190

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE 403
            N ++    + GR      +L +M  L   ++ D   +   LV   + +    A ++F E
Sbjct: 191 YNAIINGLCKKGRYARAKGILIEM--LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGE 248

Query: 404 LKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
           +  +G    +  ++ L+        + +AL  F  M+   L  +++ +++ +  +  +G+
Sbjct: 249 MLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGN 308

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
           +LEA +  ++++E   V  V AYN +  GLCK   +  A  L  D +    + P  + + 
Sbjct: 309 MLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLF-DEMVERGALPDFYTFT 367

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             I   C+ G   K + +   MTQ    P+ V  + +I G CK G +E+A +++  +  R
Sbjct: 368 TLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISR 427

Query: 583 KLLTEANTIVY 593
           K+    N I Y
Sbjct: 428 KIF--PNHITY 436



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 184/438 (42%), Gaps = 15/438 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G+  ++   L +M  N    D+  Y  +I     E  L+    +   M    ++  +  
Sbjct: 131 DGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFT 190

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I GLCK GR  R   +  EM   G+  D   Y  L+          +A ++  +++
Sbjct: 191 YNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEML 250

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   DL  ++S+I    R +  D+A   F    +  L PD      L+      G M 
Sbjct: 251 RQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNML 310

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IY 415
              K+  +M  L+     D+  +   L G  KE+ +  A  +F+E+  +G  ++P    +
Sbjct: 311 EALKIRDEM--LEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG--ALPDFYTF 366

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             L+    + G + KAL LFG M   N++ + ++++  I    + G++ +A E  + +I 
Sbjct: 367 TTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMIS 426

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P+   Y  L    C +G +  A  L  D +      PT       I   CRSG++ 
Sbjct: 427 RKIFPNHITYGILINAYCSVGHVSEAFRL-WDVMIEKGIKPTLVTCNTVIKGYCRSGDSS 485

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           K  E L  M  +G  P+ +  + +I+G  +   +++A      + +  LL +   I Y+ 
Sbjct: 486 KADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPD--IITYNV 543

Query: 596 IL---IEHMKKKTADLVL 610
           ++       + + A+LVL
Sbjct: 544 VMNGFCRQGRMQEAELVL 561


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 180/399 (45%), Gaps = 5/399 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PDV  YTAMI+ L     +DA   +  E+++  ++  V+ Y  L+  LCK GRV     L
Sbjct: 209 PDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRL 268

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              M E  +      +G+LI GL    + G+   +L+++   G   +  IYN +IG  CR
Sbjct: 269 KGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCR 328

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
                +A KLF+  V   +     T N +     + G M++  K+L +M      V   L
Sbjct: 329 KGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSL 388

Query: 381 -EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
                 + +    R+ + L +  E+  +    +  +    +  L + G+ ++A  ++ ++
Sbjct: 389 FNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQV 448

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
            G  L VN  + +  I    +  ++ EA +    ++          YN + +G CK  ++
Sbjct: 449 LGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKM 508

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D A+ L RD +      P  F + + +   C  G+ E+I+ +L++M  EG  P+ V    
Sbjct: 509 DEAIQL-RDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGT 567

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           II G CK   + +A +  T L +  L    N ++Y+ ++
Sbjct: 568 IIDGYCKAKDMHKANEYLTELMKNGL--RPNAVIYNALI 604



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/451 (21%), Positives = 187/451 (41%), Gaps = 63/451 (13%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELM--------------------DSQGRI 184
            KG K    +YN +A  L +      A+++ + M                       GR+
Sbjct: 344 SKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRL 403

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
             +L ++ +M     KP+    TA I+ L      +    +W ++    +  +V     L
Sbjct: 404 DLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNAL 463

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLC+G  +    ++ + M  +G+ +DR  Y ++I+G     K+ +A  L  D++  G+
Sbjct: 464 IHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGF 523

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           + DL  +N  +   C + + ++   L +    + L PD  T   ++         D + K
Sbjct: 524 KPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTII---------DGYCK 574

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE 424
                       A D+ K  E+L              E +K     +  IYN L+G    
Sbjct: 575 ------------AKDMHKANEYLT-------------ELMKNGLRPNAVIYNALIGGYGR 609

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA----CECHNKIIEMSQVP 480
            G +  A+ +   M+   ++   ++++  +     +G + E      +C  K IE+    
Sbjct: 610 NGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIEL---- 665

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  Y  + +G CKIG+ID A+M  ++ + +    P +  Y   +    +SG  E+  ++
Sbjct: 666 GVIGYTIIIQGFCKIGKIDEAVMYFKE-MHSRGIPPNKMTYTTLMFAYSKSGNKEEASKL 724

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
            +EM   G  P+ V  + +ISG C+  +L++
Sbjct: 725 FDEMVSLGIVPDSVSYNTLISGFCEVDSLDK 755



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/424 (19%), Positives = 193/424 (45%), Gaps = 9/424 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           +  E+  +L++M+     P+   Y  MI     + +    L++++EM    ++  V+ Y 
Sbjct: 296 QFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYN 355

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIY-GVLIEGLVGEGKVGKACDLLKDLVD 301
            +   LCK G +    ++  EM   G+++  +++  V+   L G G++     L+++++ 
Sbjct: 356 LIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLA 415

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              + +  +  + I  LC+  + ++A +++   +   L  + +T N L+    +   M  
Sbjct: 416 RFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKE 475

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
             K+L  M  +   V  D   +   + G  K  ++  A+ + +++  +G+   +  +NI 
Sbjct: 476 ATKVLKAM--VNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIF 533

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +     +G+V++ L+L  +M+   L+ + +++   I  + ++ D+ +A E   ++++   
Sbjct: 534 LHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGL 593

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P+   YN L  G  + G I  A+ ++ D +      PT   Y   +  +C +G  E++ 
Sbjct: 594 RPNAVIYNALIGGYGRNGNISDAIGIL-DTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVK 652

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
            V  +   +      +  + II G CK G ++EA   F  +  R +    N + Y  ++ 
Sbjct: 653 AVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGI--PPNKMTYTTLMF 710

Query: 599 EHMK 602
            + K
Sbjct: 711 AYSK 714


>gi|242036455|ref|XP_002465622.1| hypothetical protein SORBIDRAFT_01g042420 [Sorghum bicolor]
 gi|241919476|gb|EER92620.1| hypothetical protein SORBIDRAFT_01g042420 [Sorghum bicolor]
          Length = 817

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 111/461 (24%), Positives = 193/461 (41%), Gaps = 63/461 (13%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QGR+   +++ +KM       D+  Y+ +I  L     +   ++++E+MK+D V  DV  
Sbjct: 290 QGRVDVAMDMFDKMASYGFSVDLAMYSVLIEGLCDGNEMGKAVKLYEDMKRDRVTPDVRL 349

Query: 241 YVTLIMGLCKGGRVVRGHELFRE----MKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
              +I   C+ G          E    +K    ++   +Y V++EGL   G+V  A  LL
Sbjct: 350 LKKMIEAFCRQGDFSTVGPFINENAVHLKPGSAVL---LYNVILEGLTNHGEVEAASQLL 406

Query: 297 KDLVDSGYRAD----LGI---------------YNSIIGGLCRVKQFDKAYKLFEVTVQD 337
             +V  G R      +G+               +N ++ GLC+VK+ D A  L +  V  
Sbjct: 407 SSMVRGGQRGSDDDTVGVHIVVISEDVKPNSDSFNIVVCGLCKVKKLDLALALTKDMVGL 466

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF--------------------SVA 377
                    N L++      R+D  +++  QM+ L                      S A
Sbjct: 467 GCKGKLLMFNDLILELCNSDRLDEAYEIFNQMKDLDLKPSEFTYNSLFYGICRRKDTSAA 526

Query: 378 ADLEKFFEFLVGK---------------EERIMMALDVFEELKGKGY-SSVPIYNILMGA 421
           ADL +       K                 RI  AL   +E+   G+   +  Y+  M  
Sbjct: 527 ADLLREMRTSSHKPWIKNCTEMVQQLCFSGRITEALQFLDEMLKLGFLPDIVTYSAAMNG 586

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
           + +IGE + AL LF  +       + ++ +I I    ++G   EA E   +++     PS
Sbjct: 587 MCKIGETENALGLFRDISSKCYLPDVVAHNILINGFRKAGKFDEAQEIMEEMLSKGLFPS 646

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V  YN +    CK G+ID A+  V   + +    PT   Y   +  +C +G  ++ I + 
Sbjct: 647 VVTYNLMIDIWCKSGKIDKAISCVYKMI-DEEKPPTVVTYTSLLDGLCNAGRPDEAIILW 705

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
            +M+++GC PNE+  +A I+G+CK G  E A   +  ++ +
Sbjct: 706 CKMSEKGCSPNEIAYTAFINGLCKCGRTETAVNYYEEMKTK 746



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 145/612 (23%), Positives = 239/612 (39%), Gaps = 122/612 (19%)

Query: 88  IARFITDAFRKNQFQWGPQVVTELSKLRRV----TPDLVAEVLKVENNPTLASKFFHWAG 143
           +A  + D F +      P+   + ++LRR+    TP     V+    +   A  FF WA 
Sbjct: 39  LAHHLLDEFSR------PRATRDAARLRRLAAYLTPPAAESVILRLPSWRHALDFFRWAA 92

Query: 144 KQKGYKHNFASYNALAYCL---SRNNLFRAADQ---------------VPELMDSQGRIA 185
           +Q G++H+  S NA+A  L    R +L R A +               +   + + G   
Sbjct: 93  EQPGFRHSCYSLNAMASLLPPHQRAHLDRLATEALASRCAMTPGALGFLLRRLGAAGLPD 152

Query: 186 EMLEILEKMRRNL-CKPDVFAYTAMIRVLA-AERNLDACLRVWEEMKKDLVEADVMAY-- 241
               + +  R  L C P+ + Y  ++  LA A R  DA  R+ +EM     E  V  Y  
Sbjct: 153 TAARVFDAARTTLSCAPNSYTYNCLLDALAKAGRAEDAEARL-QEMVASCGEESVDRYTL 211

Query: 242 ----------------------------------VTLIMGLCKGGRVVRGHELFREMKEN 267
                                               L +   K G+V    EL   M+  
Sbjct: 212 TSLLNCYCNAGRPEDASAVLQRMSERAWVDEHVLTMLAVAFSKWGKVEDAVELIGRMEAL 271

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           G+        VL+ G   +G+V  A D+   +   G+  DL +Y+ +I GLC   +  KA
Sbjct: 272 GMQPSEKTLTVLVHGFARQGRVDVAMDMFDKMASYGFSVDLAMYSVLIEGLCDGNEMGKA 331

Query: 328 YKLFEVTVQDDLAP----------------DFSTVNP--------------------LLV 351
            KL+E   +D + P                DFSTV P                    +L 
Sbjct: 332 VKLYEDMKRDRVTPDVRLLKKMIEAFCRQGDFSTVGPFINENAVHLKPGSAVLLYNVILE 391

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS 411
                G ++   +LL+ M +     + D       +V           + E++K    S 
Sbjct: 392 GLTNHGEVEAASQLLSSMVRGGQRGSDDDTVGVHIVV-----------ISEDVKPNSDS- 439

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
              +NI++  L ++ ++  AL L   M GL  +   L F+  I     S  + EA E  N
Sbjct: 440 ---FNIVVCGLCKVKKLDLALALTKDMVGLGCKGKLLMFNDLILELCNSDRLDEAYEIFN 496

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           ++ ++   PS   YN L  G+C+  +  AA  L+R+ +   +  P        +  +C S
Sbjct: 497 QMKDLDLKPSEFTYNSLFYGICRRKDTSAAADLLRE-MRTSSHKPWIKNCTEMVQQLCFS 555

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           G   + ++ L+EM + G  P+ V  SA ++GMCK G  E A  +F ++  +  L +   +
Sbjct: 556 GRITEALQFLDEMLKLGFLPDIVTYSAAMNGMCKIGETENALGLFRDISSKCYLPD---V 612

Query: 592 VYDEILIEHMKK 603
           V   ILI   +K
Sbjct: 613 VAHNILINGFRK 624



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 133/322 (41%), Gaps = 8/322 (2%)

Query: 164 RNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACL 223
           +  L    D + EL +S  R+ E  EI  +M+    KP  F Y ++   +   ++  A  
Sbjct: 469 KGKLLMFNDLILELCNSD-RLDEAYEIFNQMKDLDLKPSEFTYNSLFYGICRRKDTSAAA 527

Query: 224 RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
            +  EM+    +  +     ++  LC  GR+    +   EM + G L D   Y   + G+
Sbjct: 528 DLLREMRTSSHKPWIKNCTEMVQQLCFSGRITEALQFLDEMLKLGFLPDIVTYSAAMNGM 587

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
              G+   A  L +D+    Y  D+  +N +I G  +  +FD+A ++ E  +   L P  
Sbjct: 588 CKIGETENALGLFRDISSKCYLPDVVAHNILINGFRKAGKFDEAQEIMEEMLSKGLFPSV 647

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQM-EKLKFSVAADLEKFFEFL--VGKEERIMMALDV 400
            T N ++    + G++D     + +M ++ K           + L   G+ +    A+ +
Sbjct: 648 VTYNLMIDIWCKSGKIDKAISCVYKMIDEEKPPTVVTYTSLLDGLCNAGRPDE---AIIL 704

Query: 401 FEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           + ++  KG S   I Y   +  L + G  + A+  + +M+    +++  S        + 
Sbjct: 705 WCKMSEKGCSPNEIAYTAFINGLCKCGRTETAVNYYEEMKTKCFDLDIFSLLNLTNSLIA 764

Query: 460 SGDILEACECHNKIIEMSQVPS 481
            G   + CE    +++   V S
Sbjct: 765 QGQASKGCELLKVVLQKDVVHS 786



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 128/300 (42%), Gaps = 15/300 (5%)

Query: 325 DKAYKLFEVTVQD-DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           D A ++F+        AP+  T N LL   A+ GR ++    L +M       + D    
Sbjct: 152 DTAARVFDAARTTLSCAPNSYTYNCLLDALAKAGRAEDAEARLQEMVASCGEESVDRYTL 211

Query: 384 FEFL-----VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM 438
              L      G+ E    A  V + +  + +    +  +L  A  + G+V+ A+ L G+M
Sbjct: 212 TSLLNCYCNAGRPED---ASAVLQRMSERAWVDEHVLTMLAVAFSKWGKVEDAVELIGRM 268

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
             L ++ +  + ++ +      G +  A +  +K+        +A Y+ L +GLC   E+
Sbjct: 269 EALGMQPSEKTLTVLVHGFARQGRVDVAMDMFDKMASYGFSVDLAMYSVLIEGLCDGNEM 328

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC-S 557
             A+ L  D   +  + P        I   CR G+   +   +NE      P + V+  +
Sbjct: 329 GKAVKLYEDMKRDRVT-PDVRLLKKMIEAFCRQGDFSTVGPFINENAVHLKPGSAVLLYN 387

Query: 558 AIISGMCKHGTLEEARKVFTNL-RERKLLTEANTIVYDEILIEHMKKKTAD---LVLSGL 613
            I+ G+  HG +E A ++ +++ R  +  ++ +T+    ++I    K  +D   +V+ GL
Sbjct: 388 VILEGLTNHGEVEAASQLLSSMVRGGQRGSDDDTVGVHIVVISEDVKPNSDSFNIVVCGL 447


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 176/390 (45%), Gaps = 5/390 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I +M  + ++M R   +P + ++  +I  L     L+    + E+MK   V A+V+ Y
Sbjct: 142 GEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITY 201

Query: 242 VTLIMGLCKGGRV---VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
            TLI G CK G++    +   + +EM+ +GI  +   + +LI+G   +  V  A  +  +
Sbjct: 202 NTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAE 261

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +   G + ++  YNS+I GLC   + ++A  L +  V   L P+  T N LL    +   
Sbjct: 262 MNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKM 321

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNI 417
           +    +L   M K   +              K+E +  A  ++  + GKG    V  YN 
Sbjct: 322 VKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNC 381

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L   G+++ A  L  +M   +L+ + ++++I I      G++ +A    +++    
Sbjct: 382 LIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKG 441

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             PS   YN +  G CK G + AA+ L R  +  V        Y + I   C+  + E  
Sbjct: 442 LKPSQLTYNTMIDGYCKEGNLRAALNL-RSQMEKVGRLANVATYNVLIKGFCKKDKLEDA 500

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
             +LNEM ++G  PN +    +   M + G
Sbjct: 501 NGLLNEMLEKGLIPNRMTYEIVTEEMMEKG 530



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 176/385 (45%), Gaps = 45/385 (11%)

Query: 225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
           V++EM +  +E  ++++  +I GLCK G++ +  ++  +MK  G+  +   Y  LI+G  
Sbjct: 150 VYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYC 209

Query: 285 GEGKVG---KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
             GK+G   KA  +LK++   G   +   +N +I G C+ K    A K+F    +  + P
Sbjct: 210 KMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKP 269

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVF 401
           +  T N L+      G+++    L  QM                              V 
Sbjct: 270 NVVTYNSLINGLCNNGKVNEATALRDQM------------------------------VN 299

Query: 402 EELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
             LK     ++  +N L+    +   VK+A  LF  M    +  N  +++I I  + +  
Sbjct: 300 SCLK----PNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDE 355

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
           ++ +A   +  ++     P V+ YNCL  GLC+ G+++AA  LV + +           Y
Sbjct: 356 NMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSE-MDTKHLKADLITY 414

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            + I  +C  GE +K + +L+EM ++G  P+++  + +I G CK G L  A     NLR 
Sbjct: 415 NILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAA----LNLRS 470

Query: 582 R--KLLTEANTIVYDEILIEHMKKK 604
           +  K+   AN   Y+ +LI+   KK
Sbjct: 471 QMEKVGRLANVATYN-VLIKGFCKK 494



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 165/371 (44%), Gaps = 57/371 (15%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLE---ILEKMRRNL 198
           K +G   N  +YN L   YC                    G+I +M +   IL++MR + 
Sbjct: 190 KVRGVSANVITYNTLIDGYC------------------KMGKIGKMYKADAILKEMRADG 231

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
             P+   +  +I     ++N+ A ++V+ EM +  V+ +V+ Y +LI GLC  G+V    
Sbjct: 232 ICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEAT 291

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L  +M  + +  +   +  L+ G      V +A +L  D+   G   ++  YN +I   
Sbjct: 292 ALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAY 351

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C+ +  + A+ L+ + +   + PD ST N L+      G ++    L+++M+       A
Sbjct: 352 CKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLK--A 409

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM 438
           DL                                  YNIL+ +L   GE+KKAL L  +M
Sbjct: 410 DL--------------------------------ITYNILIDSLCNKGEMKKALRLLDEM 437

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
               L+ + L+++  I  + + G++  A    +++ ++ ++ +VA YN L KG CK  ++
Sbjct: 438 CRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKL 497

Query: 499 DAAMMLVRDCL 509
           + A  L+ + L
Sbjct: 498 EDANGLLNEML 508



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 19/163 (11%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-------------------GRIAE 186
           KG   + ++YN L   L R     AA  +   MD++                   G + +
Sbjct: 370 KGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKK 429

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
            L +L++M R   KP    Y  MI     E NL A L +  +M+K    A+V  Y  LI 
Sbjct: 430 ALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIK 489

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
           G CK  ++   + L  EM E G++ +R  Y ++ E ++ +G V
Sbjct: 490 GFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGFV 532



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 6/143 (4%)

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
           V+ G+I +    + ++I     P++ ++N +  GLCK+G+++ A  ++ D      S   
Sbjct: 139 VKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANV 198

Query: 518 EFKYALTILHVCRSGEAEKIIE---VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
              Y   I   C+ G+  K+ +   +L EM  +G  PNEV  + +I G CK   +  A K
Sbjct: 199 -ITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMK 257

Query: 575 VFTNLRERKLLTEANTIVYDEIL 597
           VF  +  + +  + N + Y+ ++
Sbjct: 258 VFAEMNRQGV--KPNVVTYNSLI 278


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 178/407 (43%), Gaps = 67/407 (16%)

Query: 115 RRVTPDL---------VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLS 163
           RRV+PD+         +  + ++     +A     W     G   + A+YN+L   YC  
Sbjct: 185 RRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAW-----GLAPSVATYNSLIDGYCKK 239

Query: 164 RNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACL 223
                             G +  +  +L++M      P    +  +I       N  A +
Sbjct: 240 ---------------GGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAV 284

Query: 224 RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
           RV+EEMK+  + A V+ Y +LI GLC  G+V  G +L  EM++ G+  +   +G +++G 
Sbjct: 285 RVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGF 344

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
             +G +  A D +  + +     D+ IYN +I    R+ + + A  + E   +  ++P+ 
Sbjct: 345 CKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNV 404

Query: 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE 403
           +T N L+                       FS + D                 A  + +E
Sbjct: 405 TTYNCLIT---------------------GFSRSGDWRS--------------ASGLLDE 429

Query: 404 LKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
           +K KG  + V  YN+L+GAL   GEV+KA+ L  +M  + LE N L+++  IQ   + G+
Sbjct: 430 MKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGN 489

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           I  A E   ++ +  +  +V  YN   K  C+IG++D A  L+ + L
Sbjct: 490 IKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEML 536



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 179/411 (43%), Gaps = 13/411 (3%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +P   +  A++  L   + +D   + +    +  V  D+  + T+I GLC+ G++ +  +
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD---LLKDLVDSGYRADLGIYNSIIG 316
           + +++K  G+    A Y  LI+G   +G  G       LLK++V++G       +  +I 
Sbjct: 213 VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLIN 272

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           G C+      A ++FE   Q  +A    T N L+      G+++   KL+ +ME L  S 
Sbjct: 273 GYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLS- 331

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP----IYNILMGALLEIGEVKKAL 432
             +   F   L G  ++ MMA D  + + G    +V     IYNIL+     +G+++ A+
Sbjct: 332 -PNEITFGCVLKGFCKKGMMA-DANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAM 389

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            +   M    +  N  +++  I     SGD   A    +++ E      V  YN L   L
Sbjct: 390 AVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGAL 449

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           C  GE+  A+ L+ D +  V   P    Y   I   C  G  +   E+   M +     N
Sbjct: 450 CCKGEVRKAVKLL-DEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRAN 508

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
            V  +  I   C+ G ++EA  +   + ++ L+   N I Y+ I    M+K
Sbjct: 509 VVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVP--NGITYETIKEGMMEK 557



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ + + + E M +    P+V  Y  +I   +   +  +   + +EMK+  +EADV+ Y
Sbjct: 383 GKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTY 442

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI  LC  G V +  +L  EM E G+  +   Y  +I+G   +G +  A ++   +  
Sbjct: 443 NVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK 502

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
              RA++  YN  I   C++ + D+A  L    +   L P+  T
Sbjct: 503 CRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGIT 546


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 207/483 (42%), Gaps = 39/483 (8%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAE 186
            GY  +  +Y  L   L ++    AA  + + M   G                   R  +
Sbjct: 4   NGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHD 63

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
            ++ +++M R+ C+PD+  Y ++I  L     +D    V +E+ ++    + + Y TL++
Sbjct: 64  AIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVI 123

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA---CDLLKDLVDSG 303
             C+  R+ +   L REM   G + +  +Y   I G   E +   +   C    ++++SG
Sbjct: 124 WNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFC-EARCQSSRYECRDGDEMIESG 182

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
              D+  YN+ I GLC+  + DK  ++ E   +  + PD  T   ++    +  R+D+ F
Sbjct: 183 RIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAF 242

Query: 364 KLLAQM-------EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN 416
           ++   M       + L +S+  D       L   +E     L+  + +K      V  +N
Sbjct: 243 QVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDE----VLEHMQAMKAGCVMEVYTHN 298

Query: 417 ILMGALLEIGEVKKAL-YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             +GAL   G+   A   L G +   +L  N LS++  I    +SG++ +A +   K+++
Sbjct: 299 AFIGALCRSGKFPLAKNILLGMIESGSLP-NLLSYNFVIDGLCKSGNVDDAWKLSRKMLD 357

Query: 476 MSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                P V  +N L  G CK G +  A  L+ +        P    Y   I    + G  
Sbjct: 358 SGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSL 417

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           ++   +L EM   GC PN V  +A+I+G  KHG  EEA  +F  +  +    +   I Y+
Sbjct: 418 KQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPD--IITYN 475

Query: 595 EIL 597
            +L
Sbjct: 476 TVL 478



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 161/357 (45%), Gaps = 12/357 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PDV  Y   I  L     LD  L + EEM +  +  DV+ + ++I GLCK  R+    ++
Sbjct: 185 PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQV 244

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL--VDSGYRADLGIYNSIIGGL 318
           F+ M E G + D   Y ++++ L    ++    ++L+ +  + +G   ++  +N+ IG L
Sbjct: 245 FKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGAL 304

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           CR  +F  A  +    ++    P+  + N ++    + G +D+ +KL  +M  L      
Sbjct: 305 CRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKM--LDSGCCK 362

Query: 379 DLEKFFEFLVG---KEERIMMALDVFEELKGKGYS--SVPIYNILMGALLEIGEVKKALY 433
               FF  L+    K  R+  A  +  E+K K      V  YN L+    + G +K+A  
Sbjct: 363 PDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKL 422

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           L  +M+ +  + N ++++  I  + + G   EA    +++      P +  YN +     
Sbjct: 423 LLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFS 482

Query: 494 KIGEIDAAMMLVRDCLGNVAS--GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
           K G +  A  + +  L N  S   P    Y + I   CR+ + E+ + +L EMT  G
Sbjct: 483 KAGMMSKAEGVYQQ-LKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARG 538



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 160/368 (43%), Gaps = 43/368 (11%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK--KDLVEADVMA 240
           RI +  ++ + M    C PD   Y+ M+  L+    LD    V E M+  K     +V  
Sbjct: 237 RIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYT 296

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +   I  LC+ G+      +   M E+G L +   Y  +I+GL   G V  A  L + ++
Sbjct: 297 HNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKML 356

Query: 301 DSGY-RADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           DSG  + D+  +N++I G C+  +  +A++L  E+  ++   PD  T N L+   ++ G 
Sbjct: 357 DSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGS 416

Query: 359 MDNFFKLLAQMEKL-----------------KFSVAADLEKFFEFLVGK----------- 390
           +     LL +M+ +                 K  +  + E  F+ +  K           
Sbjct: 417 LKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNT 476

Query: 391 -----EERIMM--ALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRG 440
                 +  MM  A  V+++LK K     P    Y IL+       + ++ L L  +M  
Sbjct: 477 VLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTA 536

Query: 441 LNLEVNSLSFSIAIQCHVESGDI-LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
                +S ++++ I    E+ ++  +A   + ++++   VPS + +N L +   + G+++
Sbjct: 537 RGWSCDSYTYNVLIAKLAETEEVPSKALAVYQQMLDQDCVPSASIFNSLVRLFLRTGDVN 596

Query: 500 AAMMLVRD 507
           +A  +V++
Sbjct: 597 SARSMVQE 604



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 3/177 (1%)

Query: 182 GRIAEMLEILEKMR-RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           GR+++  ++L +M+ +N+C PDV  Y  +I   +   +L     + +EM+    + +V+ 
Sbjct: 379 GRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVT 438

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G  K G       LF EM   G   D   Y  ++      G + KA  + + L 
Sbjct: 439 YAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLK 498

Query: 301 D--SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
           +  S    D   Y  +I G CR +  ++   L +       + D  T N L+   AE
Sbjct: 499 NKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAKLAE 555


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 174/400 (43%), Gaps = 45/400 (11%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
           L KM +   +PD+  +T+++        ++  L +++++       +V+ Y TLI  LCK
Sbjct: 140 LGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCK 199

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
              +    E+F +M +NGI  +   Y  L+ GL   G+   A  LL+D++  G + ++  
Sbjct: 200 NRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVIT 259

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           + ++I    +V +  +A +L++V +Q  + PD  T   L+      GR+D   ++   ME
Sbjct: 260 FTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLME 319

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKK 430
              +                                  Y +   Y  L+    +   V+ 
Sbjct: 320 SNGY----------------------------------YPNEVTYTTLIHGFCKSKRVED 345

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
              +F +M    L  N++++++ IQ +   G    A E  N++      P +  YN L  
Sbjct: 346 GTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLD 405

Query: 491 GLCKIGEIDAAMMLV-----RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           GLC  G ++ A+M+      R+   N+ +      Y + I  +C+ G+ E   ++   + 
Sbjct: 406 GLCYNGYVEKALMIFKYMRKREMDINIVT------YTIIIQGMCKVGKVEDAFDLFCSLF 459

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
            +G  PN +  + +ISG C+ G + EA  +F  ++E   L
Sbjct: 460 SKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFL 499



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 160/324 (49%), Gaps = 9/324 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           RI + L + +++     +P+V  YT +I  L   R+L+  + ++ +M  + +  +V+ Y 
Sbjct: 167 RIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYN 226

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +L+ GLC+ GR      L R+M + GI  +   +  LI+  V  GK+ +A +L K ++  
Sbjct: 227 SLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQM 286

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
               D+  Y ++I GLC   + D+A ++F +   +   P+  T   L+    +  R+++ 
Sbjct: 287 SVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDG 346

Query: 363 FKLLAQMEKLKFSVAADLEKFFEF----LVGKEERIMMALDVFEELKG-KGYSSVPIYNI 417
            K+  +M + K  VA  +          LVG+ +   +A +VF ++   +    +  YN+
Sbjct: 347 TKIFYEMSQ-KGLVANTITYTVLIQGYCLVGRPD---VAQEVFNQMGSRRAPPDIRTYNV 402

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L   G V+KAL +F  MR   +++N ++++I IQ   + G + +A +    +    
Sbjct: 403 LLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKG 462

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAA 501
             P+V  Y  +  G C+ G I  A
Sbjct: 463 MKPNVITYTTMISGFCRRGFIHEA 486



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 121/332 (36%), Gaps = 72/332 (21%)

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL---------- 372
           QF++A  LF   V     P       LL   A+M R D    L  QM+ L          
Sbjct: 62  QFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCN 121

Query: 373 -----------------------KFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGK 407
                                  K     DL  F   L G     RI  AL +F+++ G 
Sbjct: 122 IVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGM 181

Query: 408 GYS------------------------------------SVPIYNILMGALLEIGEVKKA 431
           G+                                     +V  YN L+  L EIG    A
Sbjct: 182 GFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDA 241

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
            +L   M    ++ N ++F+  I   V+ G I+EA E +  +I+MS  P V  Y  L  G
Sbjct: 242 AWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALING 301

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
           LC  G +D A  +      N    P E  Y   I   C+S   E   ++  EM+Q+G   
Sbjct: 302 LCTYGRLDEARQMFYLMESN-GYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVA 360

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
           N +  + +I G C  G  + A++VF  +  R+
Sbjct: 361 NTITYTVLIQGYCLVGRPDVAQEVFNQMGSRR 392



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 132/352 (37%), Gaps = 38/352 (10%)

Query: 119 PDLVAEVLKVENNPTLASKFFHWAGKQK-----------GYKHNFASYNALAYCLSRNNL 167
           PDLV          +L   F HW   +            G++ N  +Y  L +CL +N  
Sbjct: 150 PDLVTFT-------SLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRH 202

Query: 168 FRAADQVPELMDSQG-------------------RIAEMLEILEKMRRNLCKPDVFAYTA 208
              A ++   M   G                   R ++   +L  M +   +P+V  +TA
Sbjct: 203 LNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTA 262

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           +I        +     +++ M +  V  DV  Y  LI GLC  GR+    ++F  M+ NG
Sbjct: 263 LIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNG 322

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
              +   Y  LI G     +V     +  ++   G  A+   Y  +I G C V + D A 
Sbjct: 323 YYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQ 382

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
           ++F         PD  T N LL      G ++    +   M K +  +           +
Sbjct: 383 EVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGM 442

Query: 389 GKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
            K  ++  A D+F  L  KG   +V  Y  ++      G + +A  LF KM+
Sbjct: 443 CKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMK 494



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 19/208 (9%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEMLEILEKM 194
           +Y AL   L        A Q+  LM+S G                   R+ +  +I  +M
Sbjct: 294 TYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEM 353

Query: 195 RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
            +     +   YT +I+        D    V+ +M       D+  Y  L+ GLC  G V
Sbjct: 354 SQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYV 413

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
            +   +F+ M++  + I+   Y ++I+G+   GKV  A DL   L   G + ++  Y ++
Sbjct: 414 EKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTM 473

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           I G CR     +A  LF+   +D   P+
Sbjct: 474 ISGFCRRGFIHEADALFKKMKEDGFLPN 501



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 20/162 (12%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           QKG   N  +Y  L   YCL                   GR     E+  +M      PD
Sbjct: 355 QKGLVANTITYTVLIQGYCLV------------------GRPDVAQEVFNQMGSRRAPPD 396

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           +  Y  ++  L     ++  L +++ M+K  ++ +++ Y  +I G+CK G+V    +LF 
Sbjct: 397 IRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFC 456

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
            +   G+  +   Y  +I G    G + +A  L K + + G+
Sbjct: 457 SLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGF 498



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 77/176 (43%), Gaps = 21/176 (11%)

Query: 104 GPQVVTELSKLRRVTPDLVAEVLK----VENNPTLASKFFHWAGKQKGYKHNFASYNALA 159
           G ++  E+S+   V   +   VL     +   P +A + F+  G ++    +  +YN L 
Sbjct: 346 GTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRA-PPDIRTYNVLL 404

Query: 160 YCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL 219
             L  N                G + + L I + MR+     ++  YT +I+ +     +
Sbjct: 405 DGLCYN----------------GYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKV 448

Query: 220 DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
           +    ++  +    ++ +V+ Y T+I G C+ G +     LF++MKE+G L + ++
Sbjct: 449 EDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPNESV 504


>gi|414888175|tpg|DAA64189.1| TPA: hypothetical protein ZEAMMB73_647521 [Zea mays]
          Length = 667

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 108/435 (24%), Positives = 192/435 (44%), Gaps = 9/435 (2%)

Query: 159 AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
            +CL+    F  +  +  L  S+ RI  +  +L  M +  C PD++A    +  L     
Sbjct: 226 GFCLTS---FTYSRWISALCQSE-RIELVERLLADMDKFGCFPDIWACNIYVDCLCKHNR 281

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
           L   L+  E M       DV+ Y T++  LC   +     EL+ EM   G+  D    GV
Sbjct: 282 LHDALKTLENMWIRGTNPDVVTYTTVVGCLCDNKQFAEAVELWEEMVRRGLKPDIVACGV 341

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           LI GL    KV +A +L   ++      ++ IYN++I G  R    +KA+K+  V   + 
Sbjct: 342 LIFGLCKSDKVDEAFELALRMLSLNLELNVCIYNALISGFLRSGSINKAFKIISVMRTNG 401

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMM 396
             PD  T N  L      G +    KL+ +ME +   V  D   + + L G  K  ++  
Sbjct: 402 CEPDVVTYNIRLNHYCNTGMIKEAEKLIEEME-MSGIVNPDRYSYNQMLKGLCKAHQLDR 460

Query: 397 ALD-VFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A   V + ++  G+  +   NIL+ A  +  +V  AL LF +M    ++ +++++   I 
Sbjct: 461 AFGFVSDHMEVGGFCDIVSCNILIDAFCKAKKVSSALKLFKEMGYKGIQADAVTYGTLIN 520

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
                G    A E   ++++   VP+V  YN +   LCK G+ + A  +    +    S 
Sbjct: 521 GLYGVGYYYLAEEIFEQMLKARVVPNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQKEVS- 579

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    +   I  + +   A + I++  +MT  G  P+ +    +ISG+ + G   +A +V
Sbjct: 580 PDIITFNTLIYWLGKCSRAIEAIDLFRDMTARGIEPDSLTFRYLISGLLEEGKATQAYEV 639

Query: 576 FTNLRERKLLTEANT 590
           +  + E  ++ + + 
Sbjct: 640 WEYMLENGIILDRDV 654



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 110/506 (21%), Positives = 199/506 (39%), Gaps = 58/506 (11%)

Query: 106 QVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHN-FASYNALAYCLS 163
            V  EL +L   + P +V  VL+  ++  +A +F+ WA  + G+ H  FA    ++    
Sbjct: 79  SVELELERLHVDLDPFVVNRVLRSISDSEMAVRFYWWAESRPGFDHTQFAIAYVVSLLFV 138

Query: 164 RNNLF-------RAADQVPELMDS-----------QGRIAEMLEILEKMRRNLCKPDVFA 205
            +N F       R   Q   L  S            G+   ++   ++M  + C+     
Sbjct: 139 DSNFFLLSEFLERVRSQGVALHRSLYRILLSGYVRAGKFDSVIHTFDEMVTSGCREFGVD 198

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y   I VL      D   + +              Y   I  LC+  R+     L  +M 
Sbjct: 199 YNRFIGVLVKNCCFDLVEKYYSVALDKGFCLTSFTYSRWISALCQSERIELVERLLADMD 258

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           + G   D     + ++ L    ++  A   L+++   G   D+  Y +++G LC  KQF 
Sbjct: 259 KFGCFPDIWACNIYVDCLCKHNRLHDALKTLENMWIRGTNPDVVTYTTVVGCLCDNKQFA 318

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +A +L+E  V+  L PD      L+    +  ++D  F+L  +M  L   +         
Sbjct: 319 EAVELWEEMVRRGLKPDIVACGVLIFGLCKSDKVDEAFELALRMLSLNLEL--------- 369

Query: 386 FLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
                                    +V IYN L+   L  G + KA  +   MR    E 
Sbjct: 370 -------------------------NVCIYNALISGFLRSGSINKAFKIISVMRTNGCEP 404

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQV--PSVAAYNCLTKGLCKIGEIDAAMM 503
           + ++++I +  +  +G I EA E   + +EMS +  P   +YN + KGLCK  ++D A  
Sbjct: 405 DVVTYNIRLNHYCNTGMIKEA-EKLIEEMEMSGIVNPDRYSYNQMLKGLCKAHQLDRAFG 463

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
            V D +  V          + I   C++ +    +++  EM  +G   + V    +I+G+
Sbjct: 464 FVSDHM-EVGGFCDIVSCNILIDAFCKAKKVSSALKLFKEMGYKGIQADAVTYGTLINGL 522

Query: 564 CKHGTLEEARKVFTNLRERKLLTEAN 589
              G    A ++F  + + +++   N
Sbjct: 523 YGVGYYYLAEEIFEQMLKARVVPNVN 548



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 21/155 (13%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCK----- 200
           KG + +  +Y  L   L     +  A+++ E M  + R+   + +   M  NLCK     
Sbjct: 506 KGIQADAVTYGTLINGLYGVGYYYLAEEIFEQM-LKARVVPNVNLYNIMLHNLCKAGQFE 564

Query: 201 ---------------PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
                          PD+  +  +I  L         + ++ +M    +E D + +  LI
Sbjct: 565 QAQKIFLQMIQKEVSPDIITFNTLIYWLGKCSRAIEAIDLFRDMTARGIEPDSLTFRYLI 624

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280
            GL + G+  + +E++  M ENGI++DR +   LI
Sbjct: 625 SGLLEEGKATQAYEVWEYMLENGIILDRDVSDRLI 659


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 167/400 (41%), Gaps = 43/400 (10%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+V ++  +I+ +     +D  + ++ EM       D   Y TL+ GLCK  R+     L
Sbjct: 179 PNVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSL 238

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             EM+  G     A + VLI GL  +G   +   L+ ++   G   +   YN++I GLC 
Sbjct: 239 LDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCL 298

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             + DKA  L +  V     P+  T   ++    + GR  +  ++L  ME+  + V    
Sbjct: 299 KGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVN--- 355

Query: 381 EKFFEFLV------GKEERIMM--------------------------------ALDVFE 402
           E  +  LV      GK E  M                                 A+ +  
Sbjct: 356 EYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILS 415

Query: 403 ELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           E+  KG + +   ++ LM    E+G   KA+ ++  M  +N   N + +S+ I    + G
Sbjct: 416 EMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDG 475

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG-NVASGPTEFK 520
            ++EA     K++     P V AY+ + +GLC  G ++ A+ L  + L     S P    
Sbjct: 476 KVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQPDVIT 535

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           Y +    +C+     + +++LN M   GC P+ V C+  +
Sbjct: 536 YNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFL 575



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 200/415 (48%), Gaps = 12/415 (2%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEM--KKDL-VEADVMAYVTLIMGLCKGGRVV 255
           CKP V ++ +++ V+      D  L  +  +   KD+ +  +V+++  +I  +CK G V 
Sbjct: 139 CKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVD 198

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
              ELFREM     + D   Y  L++GL    ++ +A  LL ++   G       +N +I
Sbjct: 199 NAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLI 258

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            GLC+   F +  KL +        P+  T N L+      G++D   K L+ ++++  S
Sbjct: 259 NGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLD---KALSLLDRMVSS 315

Query: 376 VAADLEKFFEFLVG---KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKA 431
                E  +  ++    K+ R +    V   ++ +GY  +  +Y++L+  L + G+ ++A
Sbjct: 316 KCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEA 375

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
           + LF +      ++N++ +S  +          EA +  +++ +    P+   ++ L KG
Sbjct: 376 MRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKG 435

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
             ++G    A+ + +D +  +     E  Y++ I  +C+ G+  + + V  +M   GC P
Sbjct: 436 FFEVGNSHKAIEVWKD-MTKINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRP 494

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTA 606
           + V  S++I G+C  G++EEA K++  +   +  ++ + I Y+ IL   + K+++
Sbjct: 495 DVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQPDVITYN-ILFNALCKQSS 548


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 179/414 (43%), Gaps = 13/414 (3%)

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           V   +  +G +    ++++ MR +  K   F Y  +I  L     +     +  EM+ + 
Sbjct: 286 VISFLAREGHLENAAKLVDSMRLSK-KASSFTYNPLITALLERGFVQKVEALQMEMENEG 344

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +   ++ Y  +I GL K  +V      F EM+  G+L D   Y  ++ G    G + +A 
Sbjct: 345 IMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEAL 404

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--- 350
            LL DL  +G    +  YN++I G CR+   ++A +L E  V+    PD  T   L+   
Sbjct: 405 WLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGS 464

Query: 351 --VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
             V    M R   FF  +          A +     E ++G   +   A  + E +  KG
Sbjct: 465 HKVRNLPMAR--EFFDEMLSKGLQPDCFAYNTRICAELILGDTHK---AFQLREVMMLKG 519

Query: 409 -YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
            Y     YN+++  L + G +K A  L  KM    L+ + ++++  I  H E G + EA 
Sbjct: 520 IYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEAR 579

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
           +  N ++     PSV  Y  L    C+ G + +A    R  L +V   P E  Y + I  
Sbjct: 580 KLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKML-DVGIEPNEITYNVLIHA 638

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           +CR+G         +EM + G  PN+   + +I G C+ G   +A +++  + +
Sbjct: 639 LCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQ 692



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 180/418 (43%), Gaps = 16/418 (3%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNL--CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK 231
           L+DS   +GR  E   +L++M      C  +   Y  +I  LA E +L+   ++ + M+ 
Sbjct: 249 LLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRL 308

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
              +A    Y  LI  L + G V +   L  EM+  GI+     Y  +I GL+   +V  
Sbjct: 309 S-KKASSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEA 367

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A     ++   G   DL  YNS++ G C+     +A  L     +  LAP   T N L+ 
Sbjct: 368 AQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLID 427

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY 409
               +G ++   +L  +M  ++     D+  +   + G  K   + MA + F+E+  KG 
Sbjct: 428 GYCRLGGLEEARRLKEEM--VEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGL 485

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
                 YN  + A L +G+  KA  L   M    +  +++++++ I    ++G++ +A +
Sbjct: 486 QPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKD 545

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTIL 526
              K++     P    Y CL    C+ G +  A  L+    G V+ G  P+   Y + I 
Sbjct: 546 LKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLN---GMVSDGLQPSVVTYTILIH 602

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
             CR G          +M   G  PNE+  + +I  +C+ G    A   F  + ER L
Sbjct: 603 TCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGL 660



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 178/463 (38%), Gaps = 64/463 (13%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PDV     ++RVL      D    V+ EM +  +E  ++ Y TL+    K GR      L
Sbjct: 206 PDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASML 265

Query: 261 FREMKEN--GILIDRAIYGVLIEGLVGEGKVGKACDLLK--------------------- 297
            +EM+    G L++   Y V+I  L  EG +  A  L+                      
Sbjct: 266 LKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSKKASSFTYNPLITALL 325

Query: 298 -------------DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
                        ++ + G    L  YN+II GL + +Q + A   F       L PD  
Sbjct: 326 ERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLI 385

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA----DLEKFFEFLVGKEERIMMALDV 400
           T N +L    + G +     LL  + +   +        L   +  L G EE    A  +
Sbjct: 386 TYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEE----ARRL 441

Query: 401 FEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
            EE+  +G +  V  Y ILM    ++  +  A   F +M    L+ +  +++  I   + 
Sbjct: 442 KEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELI 501

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI----DAAMMLVRDCLGNVASG 515
            GD  +A +    ++     P    YN +  GLCK G +    D  M +V D L      
Sbjct: 502 LGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGL-----Q 556

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P    Y   I   C  G   +  ++LN M  +G  P+ V  + +I   C+ G L  A   
Sbjct: 557 PDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGW 616

Query: 576 FTNLRERKLL---TEANTIVYDEILIEHMKKKTADLVLSGLKF 615
           F     RK+L    E N I Y+ ++  H   +T   +L+   F
Sbjct: 617 F-----RKMLDVGIEPNEITYNVLI--HALCRTGRTLLAYHHF 652



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 138/371 (37%), Gaps = 20/371 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNL----------FRAADQVPELMD---------SQGRI 184
           + +G      +YNA+ + L ++             RA   +P+L+            G +
Sbjct: 341 ENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNL 400

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E L +L  +RR    P V  Y  +I        L+   R+ EEM +     DV  Y  L
Sbjct: 401 KEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTIL 460

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + G  K   +    E F EM   G+  D   Y   I   +  G   KA  L + ++  G 
Sbjct: 461 MNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGI 520

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D   YN II GLC+      A  L    V D L PD  T   L+    E G +    K
Sbjct: 521 YPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARK 580

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALL 423
           LL  M       +            +   +  A   F ++   G     I YN+L+ AL 
Sbjct: 581 LLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALC 640

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
             G    A + F +M    L  N  ++++ I  +   G+  +A   + ++ +    P   
Sbjct: 641 RTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYC 700

Query: 484 AYNCLTKGLCK 494
            +N L KG  K
Sbjct: 701 THNALFKGFDK 711



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 133/309 (43%), Gaps = 12/309 (3%)

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D+   N ++  L    ++D    ++   +Q ++ P   T N LL    + GR D  
Sbjct: 203 GVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEA 262

Query: 363 FKLLAQMEK-----LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNI 417
             LL +ME      L   V  ++   F   + +E  +  A  + + ++    +S   YN 
Sbjct: 263 SMLLKEMETQGGGCLLNDVTYNVVISF---LAREGHLENAAKLVDSMRLSKKASSFTYNP 319

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ ALLE G V+K   L  +M    +    ++++  I   ++S  +  A     ++  M 
Sbjct: 320 LITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMG 379

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
            +P +  YN +  G CK G +  A+ L+ D L      PT   Y   I   CR G  E+ 
Sbjct: 380 LLPDLITYNSMLNGYCKAGNLKEALWLLGD-LRRAGLAPTVLTYNTLIDGYCRLGGLEEA 438

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIVYD 594
             +  EM ++GC P+    + +++G  K   L  AR+ F  +  + L  +    NT +  
Sbjct: 439 RRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICA 498

Query: 595 EILIEHMKK 603
           E+++    K
Sbjct: 499 ELILGDTHK 507


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 134/582 (23%), Positives = 236/582 (40%), Gaps = 76/582 (13%)

Query: 35  NRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARF--I 92
           N  S    +S S  H  PP ++Q  D             S        RH  PI +F  I
Sbjct: 17  NFSSFLQNSSHSHFHSQPP-SIQNVD----------DAVSQFNRMLCMRHTPPIIQFNKI 65

Query: 93  TDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQK----GY 148
            D+F K +       ++   +L+ + PDL+   + +     +    F ++   K    GY
Sbjct: 66  LDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGY 125

Query: 149 KHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
             +  + N L    CL                  +G++ + L   +K+     + +  +Y
Sbjct: 126 PPDTVTLNTLIKGLCL------------------KGQVKKALHFHDKLLAQGFQLNQVSY 167

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +I  +    +  A ++   ++   L + DV+ Y T+I  +CK   V   + LF EM  
Sbjct: 168 ATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAV 227

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            GI  D   Y  LI G    GK+ +A  LL ++V      ++  YN ++  LC+  +  +
Sbjct: 228 KGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKE 287

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A  +  V ++  + PD  T + L         MD +F L+ +++K               
Sbjct: 288 AKSVLAVMLKACVKPDVITYSTL---------MDGYF-LVYEVKK--------------- 322

Query: 387 LVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
                     A  VF  +   G +  V  Y IL+    +   V +AL LF +M   N+  
Sbjct: 323 ----------AQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVP 372

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
             +++S  I    +SG I    +  +++ +  Q   V  Y+ L  GLCK G +D A+ L 
Sbjct: 373 GIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALF 432

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
              + +    P  F + + +  +C+ G  +   EV  ++  +G   N    + +I+G CK
Sbjct: 433 NK-MKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCK 491

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
            G LEEA  + + + +   +  A T  ++ I+I   KK   D
Sbjct: 492 QGLLEEALTMLSKMEDNGCIPNAFT--FETIIIALFKKDEND 531



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 91/186 (48%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + E L + ++M +    P +  Y+++I  L     +     + +EM+     ADV+ Y +
Sbjct: 355 VDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSS 414

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           LI GLCK G + R   LF +MK+  I  +   + +L++GL   G++  A ++ +DL+  G
Sbjct: 415 LIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 474

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
           Y  ++  YN +I G C+    ++A  +      +   P+  T   +++   +    D   
Sbjct: 475 YHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAE 534

Query: 364 KLLAQM 369
           KLL QM
Sbjct: 535 KLLRQM 540



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 81/151 (53%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI+ + +++++MR      DV  Y+++I  L    +LD  + ++ +MK   +  ++  +
Sbjct: 388 GRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTF 447

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLCKGGR+    E+F+++   G  ++   Y V+I G   +G + +A  +L  + D
Sbjct: 448 TILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMED 507

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
           +G   +   + +II  L +  + DKA KL  
Sbjct: 508 NGCIPNAFTFETIIIALFKKDENDKAEKLLR 538


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 191/417 (45%), Gaps = 12/417 (2%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G ++EM   L+ M  N   PD   +  M    A +  +D  + ++++M++  +  +++
Sbjct: 319 TEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIV 378

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI  LCK GRV      F +M + G+  D  ++  L+ GL    K  KA +L  ++
Sbjct: 379 TYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEV 438

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +D G R D   +N+++  LCR  +  +A +L ++ ++  + PD  + N L+      GR+
Sbjct: 439 LDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRI 498

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           D   KLL  +  +   +  D   +   L G  K  RI  A  +F E+  KG +  V  YN
Sbjct: 499 DEAAKLLDVI--VSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYN 556

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++  L + G   +A  L+  M     ++N  +++I I    ++  + EA +  + +   
Sbjct: 557 TILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSK 616

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRSGE 533
                +   N +   L K G  + AM    D    +++    P    Y L   ++ + G 
Sbjct: 617 DLQLDIFTANIMIGALLKGGRKEDAM----DLFATISAYGLVPDVETYCLIAENLIKEGS 672

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            E++ E+ + M + G  PN  + +A++  +   G +  A    + L E+    EA+T
Sbjct: 673 LEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRAGAYLSKLDEKNFSLEAST 729



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 113/492 (22%), Positives = 216/492 (43%), Gaps = 49/492 (9%)

Query: 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEIL-EKMRRNLCKPDVFAYT 207
           KH FA++  +     R N      Q+ + +    R+ E  +IL  +M    C PDVF+Y+
Sbjct: 109 KHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDILLRRMPEFGCTPDVFSYS 168

Query: 208 AMIRVLAAERNLDACLRVWEEMKKDLVEA---DVMAYVTLIMGLCKGGRVVRGHELFREM 264
            +++    E+  +  L +   M  D   +   +V+ Y T+I GLCK   V R   +F+ M
Sbjct: 169 ILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHM 228

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            + G+  +   Y  LI G +  GK  +   +L+++   G + D  IY  ++  LC+  + 
Sbjct: 229 IDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRC 288

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +A  +F+  ++  + P+ +    LL   A  G +      L  M  +   V+ D   F 
Sbjct: 289 TEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLM--VGNGVSPDHHIFN 346

Query: 385 EFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM--R 439
                  ++ M+  A+ +F++++ +  S ++  Y  L+ AL ++G V  A+  F +M   
Sbjct: 347 IMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDE 406

Query: 440 GLNLEVNSLSFSIAIQCHVE---------------------------------SGDILEA 466
           G+  ++   S  +   C V+                                  G ++EA
Sbjct: 407 GMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEA 466

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
               + ++ +   P V +YN L  G C  G ID A  L+ D + ++   P +  Y  T+L
Sbjct: 467 QRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLL-DVIVSIGLKPDKVTYN-TLL 524

Query: 527 H-VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
           H  C++   +    +  EM  +G  P+ V  + I+ G+ + G   EA++++ ++   +  
Sbjct: 525 HGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSR-- 582

Query: 586 TEANTIVYDEIL 597
           T+ N   Y+ I+
Sbjct: 583 TQMNIYTYNIII 594



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 176/399 (44%), Gaps = 8/399 (2%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           + + M     +P+   YT +I    +       +++ +EM    ++ D   Y  L+  LC
Sbjct: 224 VFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLC 283

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K GR      +F  +   GI  +  IYG+L+ G   EG + +    L  +V +G   D  
Sbjct: 284 KNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHH 343

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
           I+N +     +    D+A  +F+   Q  L+P+  T   L+    ++GR+D+      QM
Sbjct: 344 IFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQM 403

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
             +   +  D+  F   + G    ++   A ++F E+  +G       +N LM  L   G
Sbjct: 404 --IDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREG 461

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            V +A  L   M  + +  + +S++  +  H  +G I EA +  + I+ +   P    YN
Sbjct: 462 RVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYN 521

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH-VCRSGEAEKIIEVLNEMT 545
            L  G CK   ID A  L R+ L    + P    Y  TILH + ++G   +  E+   M 
Sbjct: 522 TLLHGYCKARRIDDAYSLFREMLMKGLT-PDVVTYN-TILHGLFQTGRFSEAKELYLSMI 579

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
                 N    + II+G+CK+  ++EA K+F +L  + L
Sbjct: 580 NSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDL 618



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 137/280 (48%), Gaps = 9/280 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E   +++ M R   +PDV +Y  ++        +D   ++ + +    ++ D + 
Sbjct: 460 EGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVT 519

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TL+ G CK  R+   + LFREM   G+  D   Y  ++ GL   G+  +A +L   ++
Sbjct: 520 YNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMI 579

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +S  + ++  YN II GLC+    D+A+K+F      DL  D  T N ++    + GR +
Sbjct: 580 NSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKE 639

Query: 361 NFFKLLAQMEKLKFSVAADLEKF---FEFLVGKEERIMMALDVFEELKGKGYS-SVPIYN 416
           +   L A +    + +  D+E +    E L+ KE  +    ++F  ++  G + +  + N
Sbjct: 640 DAMDLFATIS--AYGLVPDVETYCLIAENLI-KEGSLEELDELFSAMEENGTAPNSRMLN 696

Query: 417 ILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAI 454
            L+  LL  G++ +A     K+  +  +LE ++ S  I+I
Sbjct: 697 ALVRWLLHRGDINRAGAYLSKLDEKNFSLEASTTSMLISI 736



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 93/197 (47%), Gaps = 11/197 (5%)

Query: 397 ALDVFEELKGKGY-SSVPIYNILMGALLEI---GEVKKALYLFGKM-RGLNLEV--NSLS 449
           AL +F+E+      +SV  +N L+ A+         +  + LF +M R  +++V  +S +
Sbjct: 35  ALKLFDEMLTHARPASVRAFNQLLTAVSRARCSSASELVVSLFNRMIRECSIKVAPSSFT 94

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMS-QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           ++I I C    G +         I++   +V     ++ L KGLC    +D A  ++   
Sbjct: 95  YTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDILLRR 154

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG---CPPNEVICSAIISGMCK 565
           +      P  F Y++ +   C    AE+ +E+L+ M  +G     PN V  + +I G+CK
Sbjct: 155 MPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCK 214

Query: 566 HGTLEEARKVFTNLRER 582
              ++ A+ VF ++ ++
Sbjct: 215 AQMVDRAKGVFQHMIDK 231



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 20/234 (8%)

Query: 147 GYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           G K +  +YN L   YC +R                  RI +   +  +M      PDV 
Sbjct: 512 GLKPDKVTYNTLLHGYCKAR------------------RIDDAYSLFREMLMKGLTPDVV 553

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  ++  L           ++  M     + ++  Y  +I GLCK   V    ++F  +
Sbjct: 554 TYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSL 613

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
               + +D     ++I  L+  G+   A DL   +   G   D+  Y  I   L +    
Sbjct: 614 CSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSL 673

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           ++  +LF    ++  AP+   +N L+      G ++     L+++++  FS+ A
Sbjct: 674 EELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRAGAYLSKLDEKNFSLEA 727


>gi|242067062|ref|XP_002454820.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
 gi|241934651|gb|EES07796.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
          Length = 600

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/417 (22%), Positives = 175/417 (41%), Gaps = 37/417 (8%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           ++    R  + L + ++MR     PD  A TA++  LA  R      RV++EM +  +  
Sbjct: 123 VLAQSARPHDALRVFDQMRARGLAPDAHACTALLTALARARMTATARRVFDEMARAGLAV 182

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
               Y  ++    K G   R   L   M   G+ +DR  Y  +I     +G   +A  + 
Sbjct: 183 STHVYNAMLHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVIALYCKKGMRYEAMCVR 242

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             +   G RAD   +NS+I GLC+  +  +A +LF         PD  T   L+      
Sbjct: 243 DRMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRA 302

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN 416
           G ++   KL  +ME                                 L G     V  YN
Sbjct: 303 GNIEEAVKLRGEMEATGM-----------------------------LPG-----VATYN 328

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++  L E G++K+   L  +M    ++ + ++ +  I  + + G +  AC+   K++E 
Sbjct: 329 AILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCNTLINAYCKRGHMTSACKVKKKMMES 388

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
               +   Y  L  G CK  E+D A       + +    P    ++  +   C+   A+ 
Sbjct: 389 GLQLNQFTYKALIHGFCKAKELDEAKEAFFQMV-DAGFSPNYSVFSWLVDGFCKKNNADA 447

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
           ++ + +E+ + G PP++ +  ++I  +C+ G +++A+KVF  ++ + L+   +++VY
Sbjct: 448 VLLIPDELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQKVFDQMQSKGLV--GDSLVY 502



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 54/114 (47%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+   ++ ++     + N DA L + +E+ K  +  D   Y +LI  LC+ G V +  ++
Sbjct: 427 PNYSVFSWLVDGFCKKNNADAVLLIPDELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQKV 486

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
           F +M+  G++ D  +Y  L    + EGK   A + L  +  +       IYN +
Sbjct: 487 FDQMQSKGLVGDSLVYATLAYTYLTEGKPVAASNTLDGMAKNQLYITPQIYNCL 540


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 110/476 (23%), Positives = 204/476 (42%), Gaps = 32/476 (6%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           GY  +  +YNA+   LS  +L  A                     + M  +   P+V+ Y
Sbjct: 151 GYVPSVLAYNAVLLALSDASLTSAR-----------------RFFDSMLSDGVAPNVYTY 193

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             ++R L    +    L +  +M+      +V+ Y TL+    + G V     L   M+E
Sbjct: 194 NILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMRE 253

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G+  +   +  ++ G+   GK+  A  +  ++V  G   D   YN+++GG C+     +
Sbjct: 254 GGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHE 313

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A  +F    Q  + PD  T   L+    + G ++    L+ QM +    +    E  F  
Sbjct: 314 ALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMN---EVTFTA 370

Query: 387 LV------GKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
           L+      G  +  ++A+   ++ + K   SV  YN L+     +G + +A  L  +M  
Sbjct: 371 LIDGFCKKGFLDDALLAVRGMKQCRIK--PSVVCYNALINGYCMVGRMDEARELLHEMEA 428

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             L+ + +++S  I  + ++ D   A E + +++E   +P    Y+ L + LC    +  
Sbjct: 429 KGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSD 488

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A +L ++ +  +   P EF Y   I   C+ G  E  + + ++M + G  P+ V  S +I
Sbjct: 489 AHVLFKNMI-KLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLI 547

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFF 616
           +G+ K     EA+++   L     +  ANT  YD  L+   +K     VL+ LK F
Sbjct: 548 NGLSKSARAMEAQQLLFKLYHEDPI-PANT-KYDA-LMHCCRKAELKSVLALLKGF 600



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 110/476 (23%), Positives = 203/476 (42%), Gaps = 49/476 (10%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           +  G   N  +YN L         FRA +     +D   R+  M      MR    KP++
Sbjct: 217 RGAGCGPNVVTYNTLVAAF-----FRAGE-----VDGAERLVGM------MREGGLKPNL 260

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             + +M+  +     ++   +V++EM ++ +  D ++Y TL+ G CK G       +F E
Sbjct: 261 VTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAE 320

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M + GI+ D   +  LI  +   G + +A  L++ + + G + +   + ++I G C+   
Sbjct: 321 MTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGF 380

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            D A        Q  + P     N L+     +GRMD   +LL +ME     +  D+  +
Sbjct: 381 LDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEME--AKGLKPDVVTY 438

Query: 384 FEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRG 440
              +    K      A ++ +++  KG     I Y+ L+  L     +  A  LF  M  
Sbjct: 439 STIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIK 498

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE-ID 499
           L L+ +  +++  I  H + G++  A   H+K+++   +P V  Y+ L  GL K    ++
Sbjct: 499 LGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAME 558

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           A  +L +  L +    P   KY   ++H CR  E + ++                   A+
Sbjct: 559 AQQLLFK--LYHEDPIPANTKYD-ALMHCCRKAELKSVL-------------------AL 596

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKF 615
           + G C  G + EA KV+ ++ +R    + +  VY  ++  H +   A  V+  L F
Sbjct: 597 LKGFCMKGLMNEADKVYQSMLDRNWNLDGS--VYSVLIHGHCR---AGNVMKALSF 647



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/462 (22%), Positives = 198/462 (42%), Gaps = 35/462 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G K N  ++N++      N + +A           G++ +  ++ ++M R    PD 
Sbjct: 252 REGGLKPNLVTFNSMV-----NGMCKA-----------GKMEDARKVFDEMVREGLAPDG 295

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
            +Y  ++            L V+ EM +  +  DV+ + +LI  +CK G + R   L R+
Sbjct: 296 VSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQ 355

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M+E G+ ++   +  LI+G   +G +  A   ++ +     +  +  YN++I G C V +
Sbjct: 356 MRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGR 415

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-EKLKFSVAADLEK 382
            D+A +L        L PD  T + ++    +     + F+L  QM EK     A     
Sbjct: 416 MDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSS 475

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGL 441
               L G E+R+  A  +F+ +   G       Y  L+    + G V+ AL L  KM   
Sbjct: 476 LIRVLCG-EKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKA 534

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            +  + +++S+ I    +S   +EA +   K+     +P+   Y+ L    C+  E+ + 
Sbjct: 535 GVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMH-CCRKAELKSV 593

Query: 502 MMLVRD-CLGNVASGPTEFK--------------YALTILHVCRSGEAEKIIEVLNEMTQ 546
           + L++  C+  + +   +                Y++ I   CR+G   K +    +M Q
Sbjct: 594 LALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQ 653

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
            G  PN     ++I G+ ++G + EA +V   L     L +A
Sbjct: 654 GGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADA 695



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/428 (21%), Positives = 181/428 (42%), Gaps = 41/428 (9%)

Query: 145 QKGYKHNFASYNALAYCLSR-NNLFRAADQVPELMD------------------SQGRIA 185
           QKG   +  ++ +L + + +  NL RA   V ++ +                   +G + 
Sbjct: 323 QKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLD 382

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + L  +  M++   KP V  Y A+I        +D    +  EM+   ++ DV+ Y T+I
Sbjct: 383 DALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTII 442

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              CK        EL ++M E G+L D   Y  LI  L GE ++  A  L K+++  G +
Sbjct: 443 SAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQ 502

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D   Y S+I G C+    + A  L +  V+  + PD  T + L+   ++  R     +L
Sbjct: 503 PDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQL 562

Query: 366 LAQM-EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE 424
           L ++  +         +         E + ++AL     LKG                  
Sbjct: 563 LFKLYHEDPIPANTKYDALMHCCRKAELKSVLAL-----LKG---------------FCM 602

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G + +A  ++  M   N  ++   +S+ I  H  +G++++A   H ++++    P+  +
Sbjct: 603 KGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTS 662

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
              L +GL + G +  A  +++  L   +    E   AL  L++   G  + +++VL+ M
Sbjct: 663 TISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALIDLNL-NEGNVDAVLDVLHGM 721

Query: 545 TQEGCPPN 552
            ++G  P+
Sbjct: 722 AKDGLLPS 729



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 108/248 (43%), Gaps = 19/248 (7%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+++   + + M +   +PD F YT++I     E N+++ L + ++M K  V  DV+ Y 
Sbjct: 485 RLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYS 544

Query: 243 TLIMGLCKGGRVVRGHEL-FREMKENGILIDRAIYGV--------------LIEGLVGEG 287
            LI GL K  R +   +L F+   E+ I  +     +              L++G   +G
Sbjct: 545 VLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKG 604

Query: 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
            + +A  + + ++D  +  D  +Y+ +I G CR     KA    +  +Q   AP+ ++  
Sbjct: 605 LMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTI 664

Query: 348 PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE--KFFEFLVGKEERIMMALDVFEELK 405
            L+    E G +    +++ Q+  L +   AD E  K    L   E  +   LDV   + 
Sbjct: 665 SLIRGLFENGMVVEADQVIQQL--LNYCSLADAEASKALIDLNLNEGNVDAVLDVLHGMA 722

Query: 406 GKGYSSVP 413
             G    P
Sbjct: 723 KDGLLPSP 730


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 129/516 (25%), Positives = 226/516 (43%), Gaps = 40/516 (7%)

Query: 91  FITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTL-------ASKFFHWAG 143
            +T   R+N  +   ++  E+++ RR+  D     L+V     L       A ++F  A 
Sbjct: 193 LLTAMIRRNMVEDAHRLFDEMAE-RRIYGD--CYTLQVLMRACLKGGKFVEAERYFGQAA 249

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
             +G K + ASY+ +   + R +    A ++ E  +  G +                P  
Sbjct: 250 G-RGLKLDAASYSIVIQAVCRGSDLDLASKLVEGDEELGWV----------------PSE 292

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y A+I       N    LR+ +EM    V  +V    +LI G C  G V     LF E
Sbjct: 293 GTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDE 352

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           + E G+  + AI+ VLIE     G V KA +L   +   G +  + I N ++ G  +   
Sbjct: 353 VVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNL 412

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            + AY L +  V++ +A    T N +L+   E+G+++    L  +M  +   +   L  +
Sbjct: 413 LENAYLLLDGAVENGIA-SVVTYNIVLLWLCELGKVNEACNLWDKM--IGKGITPSLVSY 469

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVP----IYNILMGALLEIGEVKKALYLFGKMR 439
              ++G  ++  M  D  E + G   S +      Y ILM    + G+ + A  +F +M 
Sbjct: 470 NHMILGHCKKGCMD-DAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMV 528

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              +     +F+  I    + G + EA +  N  I+ S +P+   YNC+  G  K G ID
Sbjct: 529 AAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAID 588

Query: 500 AAMMLVRD-CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           +A  + R+ C   ++  P    Y   I   C+S + +  +++ ++M ++G   +  + + 
Sbjct: 589 SAESVYREMCRSEIS--PNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYAT 646

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           +I+G CK   +E A K F+ L E  L    NTIVY+
Sbjct: 647 LIAGFCKMQDMENACKFFSKLLEVGL--TPNTIVYN 680



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 206/489 (42%), Gaps = 58/489 (11%)

Query: 183 RIAEMLEILEKMRRNLCKPDV----FAYTAMIRVLAAERNL-DACLRVWEEMKKDLVEAD 237
           +I E +E    M  +   P V       TAMIR     RN+ +   R+++EM +  +  D
Sbjct: 167 KITEAVECFRAMLEDGVVPWVPFVNVLLTAMIR-----RNMVEDAHRLFDEMAERRIYGD 221

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL-------------- 283
                 L+    KGG+ V     F +    G+ +D A Y ++I+ +              
Sbjct: 222 CYTLQVLMRACLKGGKFVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASKLVE 281

Query: 284 ---------------------VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
                                V  G  G+A  L  ++VDS    ++ +  S+I G C   
Sbjct: 282 GDEELGWVPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRG 341

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
             + A +LF+  V+  + P+ +  + L+  C+++G ++   +L  +M+ +       +  
Sbjct: 342 DVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILN 401

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
           F      K+  +  A  + +     G +SV  YNI++  L E+G+V +A  L+ KM G  
Sbjct: 402 FLLKGFRKQNLLENAYLLLDGAVENGIASVVTYNIVLLWLCELGKVNEACNLWDKMIGKG 461

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           +  + +S++  I  H + G + +A E  N IIE    P+   Y  L +G  K G+ + A 
Sbjct: 462 ITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAF 521

Query: 503 MLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
            +       VA+G  PT++ +   I  +C+ G   +  + LN   ++   P  +  + II
Sbjct: 522 NMFDQM---VAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCII 578

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLES 620
            G  K G ++ A  V+  +   ++    N I Y  ++    K    DL L       +  
Sbjct: 579 DGYVKEGAIDSAESVYREMCRSEI--SPNVITYTSLINGFCKSNKMDLALK------MHD 630

Query: 621 KLKAKGCKL 629
            +K KG +L
Sbjct: 631 DMKRKGLEL 639



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 185/397 (46%), Gaps = 12/397 (3%)

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V  Y  ++  L     ++    +W++M    +   +++Y  +I+G CK G +   HE+  
Sbjct: 431 VVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMN 490

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            + E+G+  +   Y +L+EG   +G    A ++   +V +G       +NSII GLC+V 
Sbjct: 491 GIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVG 550

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
           +  +A       ++    P   T N ++    + G +D+   +  +M   +  ++ ++  
Sbjct: 551 RVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREM--CRSEISPNVIT 608

Query: 383 FFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
           +   + G  K  ++ +AL + +++K KG    + +Y  L+    ++ +++ A   F K+ 
Sbjct: 609 YTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLL 668

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
            + L  N++ ++I I  +    ++  A   H ++I       +  Y  L  GL K G++ 
Sbjct: 669 EVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLS 728

Query: 500 AAMMLVRD--CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
            A+ L  +  C G V   P  F Y + I  +C  G+ E   ++L EM      P  ++ +
Sbjct: 729 FALDLYSEMLCRGIV---PDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPTVLLYN 785

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
            +I+G  K G L+EA ++   + ++ L+ +  T  YD
Sbjct: 786 TLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTT--YD 820



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/349 (20%), Positives = 149/349 (42%), Gaps = 40/349 (11%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + +  E++  +  +  KP+   YT ++     + + +    ++++M    +      
Sbjct: 479 KGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYT 538

Query: 241 YVTLIMGLCKGGRVVRGHE-----------------------------------LFREMK 265
           + ++I GLCK GRV    +                                   ++REM 
Sbjct: 539 FNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMC 598

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
            + I  +   Y  LI G     K+  A  +  D+   G   D+ +Y ++I G C+++  +
Sbjct: 599 RSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDME 658

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
            A K F   ++  L P+    N ++     +  M+    L  +M  +   +  DL+ +  
Sbjct: 659 NACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEM--INNKIPCDLKIYTS 716

Query: 386 FLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            + G  KE ++  ALD++ E+  +G    + +YN+L+  L   G+++ A  +  +M G N
Sbjct: 717 LIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNN 776

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
           +    L ++  I  H + G++ EA   H+++++   VP    Y+ L  G
Sbjct: 777 ITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTTYDILVNG 825



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 9/248 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I     +  +M R+   P+V  YT++I        +D  L++ ++MK+  +E D+  
Sbjct: 584 EGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITV 643

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI G CK   +    + F ++ E G+  +  +Y ++I        +  A +L K+++
Sbjct: 644 YATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMI 703

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           ++    DL IY S+I GL +  +   A  L+   +   + PD    N L+      G+++
Sbjct: 704 NNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLE 763

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IY 415
           N  K+L +M+    +    L  +   + G  KE  +  A  + +E+  KG   VP    Y
Sbjct: 764 NAGKILKEMDGNNITPTVLL--YNTLIAGHFKEGNLQEAFRLHDEMLDKGL--VPDDTTY 819

Query: 416 NILMGALL 423
           +IL+   L
Sbjct: 820 DILVNGKL 827


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 107/418 (25%), Positives = 190/418 (45%), Gaps = 17/418 (4%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           +E    MR   CKPD+FA+  ++  L  +      L V+ +M K  +  DV+ Y  LI G
Sbjct: 148 VESFSLMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHG 207

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK  +      LF EM + GIL ++ IY +++ GL    K+  A  L   +  SG   D
Sbjct: 208 LCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRD 267

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           L  YN ++ G C+    D A+ L ++  +D           L+       R +       
Sbjct: 268 LITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQ 327

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLE 424
           +M  L+ ++  D+  +   + G  +E R+  AL +  E+  +G     I YN L+    +
Sbjct: 328 KM--LRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCD 385

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
           +G + +A  L  ++   +   N+ ++SI I    ++G I +A     ++ ++  +PSV  
Sbjct: 386 MGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVT 445

Query: 485 YNCLTKGLCKIGEIDAAMMLV-------RDCLGNVASGPTEFKYALTILHV-----CRSG 532
           +N L  GLCK   ++ A +L        +  L    S  T+  + +  L V     C SG
Sbjct: 446 FNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESG 505

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
              K  ++L ++   G  P+    + +I+G CK G +  A K+F  ++ +  + ++ T
Sbjct: 506 MILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVT 563



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 160/379 (42%), Gaps = 16/379 (4%)

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           +I  L  E   +   +V +E+K   ++    A+  LI    + G   +  E F  M++  
Sbjct: 99  IIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFD 158

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
              D   + +++  LV +     A  +   ++      D+  Y  +I GLC+  +   A 
Sbjct: 159 CKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDAL 218

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
            LF+      + P+    + +L    +  ++ +  +L ++M         DL  +   L 
Sbjct: 219 VLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMR--ASGCNRDLITYNVLLN 276

Query: 389 G--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
           G  K   +  A  + + L   G+   V  Y  L+  L      ++A   + KM   N++ 
Sbjct: 277 GFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKP 336

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML- 504
           + + ++I I+   + G + EA     ++ E    P    YN L KG C +G +D A  L 
Sbjct: 337 DVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLR 396

Query: 505 ----VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
                 DC       P    Y++ I  +C++G   K   +  EM + GC P+ V  +++I
Sbjct: 397 LEISKHDCF------PNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLI 450

Query: 561 SGMCKHGTLEEARKVFTNL 579
           +G+CK   LEEAR +F  +
Sbjct: 451 NGLCKANRLEEARLLFYQM 469



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 143/324 (44%), Gaps = 10/324 (3%)

Query: 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
           G  LF    ++  L  R +  ++I  L+ E        +L++L +S  +     ++ +I 
Sbjct: 77  GFRLFIWSLKSWHLRCRTVQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIE 136

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-LKFS 375
                   +KA + F +    D  PD    N +L     + R + F   LA   + LK +
Sbjct: 137 AYSEAGMDEKAVESFSLMRDFDCKPDLFAFNLIL---HFLVRKEAFLLALAVYNQMLKCN 193

Query: 376 VAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKAL 432
           +  D+  +   + G  K  +   AL +F+E+  +G   +  IY+I++  L +  ++  A 
Sbjct: 194 LNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQ 253

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            LF KMR      + +++++ +    +SG + +A      + +   +  V  Y CL  GL
Sbjct: 254 RLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGL 313

Query: 493 CKIGEIDAAMMLVRDCLG-NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
            +    + A M  +  L  N+   P    Y + I  + + G   + + +L EMT+ G  P
Sbjct: 314 FRARRYEEAHMWYQKMLRENIK--PDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRP 371

Query: 552 NEVICSAIISGMCKHGTLEEARKV 575
           + +  +A+I G C  G L+EA  +
Sbjct: 372 DTICYNALIKGFCDMGYLDEAESL 395



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 136/317 (42%), Gaps = 47/317 (14%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK------- 230
           M   G I +   I ++M +  C P V  + ++I  L     L+    ++ +M+       
Sbjct: 418 MCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSL 477

Query: 231 -------KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
                   D V  D+ +   ++  LC+ G +++ ++L  ++ ++G+L D   Y +LI G 
Sbjct: 478 FLRLSQGTDKV-FDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGF 536

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
              G +  A  L K++   G+  D   Y ++I GL R  + + A ++FE  V+    P+ 
Sbjct: 537 CKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPES 596

Query: 344 STVNPLLV-CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
           ST   ++   C E                +  +++  ++   +F   ++E++ +  + F+
Sbjct: 597 STYKTIMTWSCRE--------------NNISLALSVWMKYLRDFRGWEDEKVRVVAESFD 642

Query: 403 --------------ELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
                         ++K K +   P Y I +  L++     +A  +F  ++   + ++S 
Sbjct: 643 NEELQTAIRRLLEMDIKSKNFDLAP-YTIFLIGLVQAKRDCEAFAIFSVLKDFKMNISSA 701

Query: 449 SFSIAIQ--CHVESGDI 463
           S  + I   C VE+ D+
Sbjct: 702 SCVMLIGRLCMVENLDM 718



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 91/177 (51%), Gaps = 5/177 (2%)

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           + ++++G L++    +    +  +++   ++++S +FS+ I+ + E+G   +A E  + +
Sbjct: 95  VQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLM 154

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            +    P + A+N +   L +      A+ +    L      P    Y + I  +C++ +
Sbjct: 155 RDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQML-KCNLNPDVVTYGILIHGLCKTCK 213

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR----ERKLLT 586
            +  + + +EMT  G  PN++I S ++SG+C+   + +A+++F+ +R     R L+T
Sbjct: 214 TQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLIT 270



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 120/274 (43%), Gaps = 18/274 (6%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G I +  ++L ++  +   PD+  Y  +I       N++   ++++EM+      D + 
Sbjct: 504 SGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVT 563

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL-LKDL 299
           Y TLI GL + GR     E+F +M + G + + + Y  ++     E  +  A  + +K L
Sbjct: 564 YGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYL 623

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAY-KLFEVTVQD---DLAPDFSTVNPLLVCCAE 355
            D     D  +   ++      ++   A  +L E+ ++    DLAP        L+   +
Sbjct: 624 RDFRGWEDEKV--RVVAESFDNEELQTAIRRLLEMDIKSKNFDLAP----YTIFLIGLVQ 677

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK---EERIMMALDVFEELKGKGYSSV 412
             R    F + + ++  K ++++        L+G+    E + MA+DVF     +G+  +
Sbjct: 678 AKRDCEAFAIFSVLKDFKMNISS---ASCVMLIGRLCMVENLDMAMDVFLFTLERGFRLM 734

Query: 413 -PIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
            PI N L+  LL +     AL+L  +M     E+
Sbjct: 735 PPICNQLLCNLLHLDRKDDALFLANRMEASGTEL 768


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 121/512 (23%), Positives = 213/512 (41%), Gaps = 48/512 (9%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNL----FRAADQVPE---LMDS------------QGRI 184
           K  GY+ + A+YNAL   L+        FR   ++ E    MD             +GR 
Sbjct: 32  KDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRW 91

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           ++ L ++E   R   K D    T MI  L      D  +     M+ +    +V+ Y TL
Sbjct: 92  SDALVMIE---REDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTL 148

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + G  K  ++     +   M + G   + +++  L+           A  LLK + D G 
Sbjct: 149 LTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGC 208

Query: 305 RADLGIYNSIIGGLCRVKQFDK------AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
                 YN  IG +C  ++         A K++E  +      +         C   MG+
Sbjct: 209 PPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGK 268

Query: 359 MDNFFKLLAQMEKLKFSV-AADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYN 416
            D  F+++  M    F    +   K   FL  +  ++  A  +F+E+K  G +  V  Y 
Sbjct: 269 FDMAFQIIKVMMGKGFVPDTSTYSKVITFLC-EAMKVEKAFLLFQEMKSVGVNPDVYTYT 327

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+ +  + G +++A   F +MR +    N ++++  +  ++++  + +A +  N++I+ 
Sbjct: 328 ILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDA 387

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG---NVAS------------GPTEFKY 521
              P+   Y+ L  GLCK GEI  A  +    +G   NV S             P    Y
Sbjct: 388 GCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTY 447

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              I  +C++ +     E+L+ M   GC PN +I  A+I G CK G ++ A++VF  + +
Sbjct: 448 GALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSK 507

Query: 582 RKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
              L   +T  Y  ++    K +  DL +  L
Sbjct: 508 CGYLPTVHT--YTSLIDAMFKDRRLDLAMKVL 537



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/469 (21%), Positives = 202/469 (43%), Gaps = 56/469 (11%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177
           +PDL+A   KV      +S   +        K N A++   A CL     F  A Q+ ++
Sbjct: 230 SPDLLALAEKVYEEMLASSCVLN--------KVNTANF---ARCLCGMGKFDMAFQIIKV 278

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           M  +G +                PD   Y+ +I  L     ++    +++EMK   V  D
Sbjct: 279 MMGKGFV----------------PDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPD 322

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V  Y  LI   CK G + +    F EM+  G   +   Y  L+   +   ++ +A D+  
Sbjct: 323 VYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFN 382

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE--VTVQDDLAPDFSTVNPLLVCCAE 355
            ++D+G   +   Y++++ GLC+  +  KA +++   +   D++  DF            
Sbjct: 383 RMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDF------------ 430

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SV 412
                 +F+      K   S+A ++  +   + G  K  +++ A ++ + +   G   + 
Sbjct: 431 ------YFE-----GKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNH 479

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
            IY+ L+    ++G++  A  +F +M          +++  I    +   +  A +  ++
Sbjct: 480 IIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQ 539

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           ++E S  P+V  Y  +  GLC+IGE   A+ L+   +      P    Y   I  + +SG
Sbjct: 540 MVESSCTPNVVTYTAMIDGLCRIGECQKALKLL-SMMEEKGCSPNVVTYTALIDGLGKSG 598

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           + +  +++  +M+ +GC PN V    +I+  C  G L+EA  + + +++
Sbjct: 599 KVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQ 647



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 108/500 (21%), Positives = 200/500 (40%), Gaps = 49/500 (9%)

Query: 117 VTPDLVAEVLKVEN--NPTLASKFFHWAGKQK--GYKHNFASYNALAYCLSRNNLFRAAD 172
           V PD+    + +++     L  +   W  + +  G   N  +Y AL +       +  A 
Sbjct: 319 VNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLH------AYLKAK 372

Query: 173 QVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM--- 229
           Q+P+  D          I  +M    C P+   Y+A++  L     +     V+ ++   
Sbjct: 373 QLPQASD----------IFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGT 422

Query: 230 -------------KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
                          D +  +V+ Y  LI GLCK  +VV   EL   M  NG   +  IY
Sbjct: 423 SDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIY 482

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
             LI+G    GK+  A ++   +   GY   +  Y S+I  + + ++ D A K+    V+
Sbjct: 483 DALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVE 542

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
               P+  T   ++     +G      KLL+ ME+   S            +GK  ++ +
Sbjct: 543 SSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDL 602

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           +L +F ++  KG + +   Y +L+      G + +A  L  +M+          +   +Q
Sbjct: 603 SLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQ 662

Query: 456 C----HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
                 + S  +LE  E H        VP    Y  L     K G ++ A+ L ++ +  
Sbjct: 663 GFSKKFIASLGLLEELESHG------TVPIAPVYGLLIDNFSKAGRLEEALELHKEMMEL 716

Query: 512 VASGPTEFK--YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
            +S     K  Y   I  +C + + EK  E+ +E+T++G  P   +   +I G+ K    
Sbjct: 717 SSSLNITSKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKW 776

Query: 570 EEARKVFTNLRERKLLTEAN 589
            EA ++  ++ +  +  ++N
Sbjct: 777 NEALQLCYSICDEGVNWQSN 796



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 145/356 (40%), Gaps = 17/356 (4%)

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
           H    E+K+ G     A Y  L++ L   G++     + K++ +SG+  D          
Sbjct: 25  HTADPELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQA 84

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
           LC+  ++  A  + E   ++D   D      ++    E    D     L +M     S  
Sbjct: 85  LCKEGRWSDALVMIE---REDFKLDTVLCTQMISGLMEASLFDEAISFLHRMR--CNSCI 139

Query: 378 ADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKKALYL 434
            ++  +   L G  K++++     +   +  +G +  P ++N L+ +     +   A  L
Sbjct: 140 PNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKL 199

Query: 435 FGKMRGLNLEVNSLSFSIAIQ--CHVE---SGDILEACE-CHNKIIEMSQVPSVAAYNCL 488
             +M         ++++I I   C  E   S D+L   E  + +++  S V +       
Sbjct: 200 LKRMADCGCPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANF 259

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
            + LC +G+ D A  +++  +G     P    Y+  I  +C + + EK   +  EM   G
Sbjct: 260 ARCLCGMGKFDMAFQIIKVMMGK-GFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVG 318

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
             P+    + +I   CK G +E+AR  F  +R   +   AN + Y  +L  ++K K
Sbjct: 319 VNPDVYTYTILIDSFCKAGLIEQARSWFDEMRS--IGCSANVVTYTALLHAYLKAK 372


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 189/422 (44%), Gaps = 12/422 (2%)

Query: 181 QGRIAEMLEILEKM---RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           + R  E LE+L  M   +   C P++ +Y  +I     E  +D    ++ +M    +  +
Sbjct: 179 ENRAEEALELLHMMADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPN 238

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ Y  +I GLCK   V R   +F++M + G+  +   Y  LI G +  G+  +   +LK
Sbjct: 239 VVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLK 298

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           ++   G   D   Y  ++  LC+  +  +A KLF+  ++  + PD S    +L   A  G
Sbjct: 299 EMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKG 358

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYN 416
            +      L  M     S    +         K+  I  A+D+F +++ +G S +V  Y 
Sbjct: 359 ALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYA 418

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKII 474
            L+ AL ++G V  A   F +M    +  N + F+  +   C ++  +  +A E   +++
Sbjct: 419 TLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWE--KAGELFFEMV 476

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                P+V  +N +   LC  G +  A  L+ D +  V + P    Y   I   C  G+ 
Sbjct: 477 NQGIHPNVVFFNTIMCNLCTEGRVMKAQRLI-DLMERVGTRPDIISYNALIRGHCLVGKT 535

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTI 591
           ++  ++L+ M   G  PNE   + ++ G C+ G +++A  VF  +    +   +   NTI
Sbjct: 536 DEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTI 595

Query: 592 VY 593
           ++
Sbjct: 596 LH 597



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 178/413 (43%), Gaps = 41/413 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +  I E ++I  KMR+    P+V  Y  +I  L     +D     + +M  + V  +++ 
Sbjct: 392 KAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVV 451

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + +L+ GLC   +  +  ELF EM   GI  +   +  ++  L  EG+V KA  L+  + 
Sbjct: 452 FTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLME 511

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G R D+  YN++I G C V + D+A KL ++ +   L P+  T N LL      GR+D
Sbjct: 512 RVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRID 571

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
           + + +  +M  L   +   +  +   L G  K  R   A +++  +   G   S+  YNI
Sbjct: 572 DAYSVFQEM--LSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNI 629

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++  L +   V +AL +F  +   +L+V+ ++F+I I   ++ G   +A      I    
Sbjct: 630 ILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANG 689

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
            VP V  Y  + + L +                                     G  E+ 
Sbjct: 690 LVPDVTTYRLIAENLIE------------------------------------EGSLEEF 713

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             + +EM + GC PN ++ + ++  +   G +  A    + + E+    EA+T
Sbjct: 714 DGMFSEMEKSGCAPNSLMLNFLVRRLLLRGDISRAGAYLSKIDEKNFSLEAST 766



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 167/390 (42%), Gaps = 15/390 (3%)

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI---DRAIYGVLIEGLVGEGKVGKAC 293
           +V++Y TL+ G C   R     EL   M +  +     +   Y  +I G   EG+V KA 
Sbjct: 165 NVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNTVINGFFTEGQVDKAY 224

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           +L  D+ D G   ++  Y  +I GLC+ +  D+A  +F+  +   + P+  T   L+   
Sbjct: 225 NLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGY 284

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SV 412
             +G+     ++L +M                  + K+ +   A  +F+ +  KG    V
Sbjct: 285 LSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDV 344

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
            IY I++      G + +       M G  +  N   F+I      +   I EA +  NK
Sbjct: 345 SIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNK 404

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           + +    P+V  Y  L   LCK+G +D A +     + N    P    +   +  +C   
Sbjct: 405 MRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMI-NEGVAPNIVVFTSLVYGLCTID 463

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           + EK  E+  EM  +G  PN V  + I+  +C  G + +A+++  +L ER + T  + I 
Sbjct: 464 KWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLI-DLMER-VGTRPDIIS 521

Query: 593 YDEILIEHM-------KKKTADLVLS-GLK 614
           Y+ ++  H          K  D++LS GLK
Sbjct: 522 YNALIRGHCLVGKTDEASKLLDIMLSVGLK 551



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 105/457 (22%), Positives = 198/457 (43%), Gaps = 26/457 (5%)

Query: 129 ENNPTLASKFFHWA--GKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAE 186
           EN    A +  H    G+ +    N  SYN +      N  F           ++G++ +
Sbjct: 179 ENRAEEALELLHMMADGQVRSCPPNLVSYNTVI-----NGFF-----------TEGQVDK 222

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
              +   M      P+V  YT +I  L   + +D    V+++M    V  +++ Y  LI 
Sbjct: 223 AYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIH 282

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           G    G+      + +EM  +G+  D   YG+L++ L  +GK  +A  L   ++  G + 
Sbjct: 283 GYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKP 342

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D+ IY  I+ G        + +   ++ V + ++P+    N +    A+   +     + 
Sbjct: 343 DVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIF 402

Query: 367 AQMEKLKFS-VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
            +M +   S    +     + L  K  R+  A   F ++  +G + ++ ++  L+  L  
Sbjct: 403 NKMRQQGLSPNVVNYATLIDALC-KLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCT 461

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV-ESGDILEACECHNKIIEMSQVPSVA 483
           I + +KA  LF +M    +  N + F+  I C++   G +++A    + +  +   P + 
Sbjct: 462 IDKWEKAGELFFEMVNQGIHPNVVFFN-TIMCNLCTEGRVMKAQRLIDLMERVGTRPDII 520

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH-VCRSGEAEKIIEVLN 542
           +YN L +G C +G+ D A  L+ D + +V   P E  Y  T+LH  CR G  +    V  
Sbjct: 521 SYNALIRGHCLVGKTDEASKLL-DIMLSVGLKPNECTYN-TLLHGYCRDGRIDDAYSVFQ 578

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           EM   G  P  V  + I+ G+ K     EA++++ N+
Sbjct: 579 EMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNM 615



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 175/409 (42%), Gaps = 43/409 (10%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G+  E++ +L++M  +  +PD F Y  ++                             
Sbjct: 286 SIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDY--------------------------- 318

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
                   LCK G+     +LF  M   GI  D +IYG+++ G   +G + +    L  +
Sbjct: 319 --------LCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLM 370

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V +G   +  I+N +     +     +A  +F    Q  L+P+      L+    ++GR+
Sbjct: 371 VGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRV 430

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYN 416
           D+      QM  +   VA ++  F   + G    ++   A ++F E+  +G + +V  +N
Sbjct: 431 DDAELKFNQM--INEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFN 488

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            +M  L   G V KA  L   M  +    + +S++  I+ H   G   EA +  + ++ +
Sbjct: 489 TIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSV 548

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH-VCRSGEAE 535
              P+   YN L  G C+ G ID A  + ++ L N  + P    Y  TILH + ++    
Sbjct: 549 GLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGIT-PVVVTYN-TILHGLFKTRRFS 606

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           +  E+   M   G   +    + I++G+ K+  ++EA K+F +L  + L
Sbjct: 607 EAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDL 655



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 136/282 (48%), Gaps = 11/282 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++GR+ +   +++ M R   +PD+ +Y A+IR        D   ++ + M    ++ +  
Sbjct: 496 TEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNEC 555

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TL+ G C+ GR+   + +F+EM  NGI      Y  ++ GL    +  +A +L  ++
Sbjct: 556 TYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNM 615

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           + SG +  +  YN I+ GL +    D+A K+F+     DL  D  T N ++    + GR 
Sbjct: 616 ITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRK 675

Query: 360 DNFFKLLAQMEKLKFSVAADLEKF---FEFLVGKEERIMMALD-VFEELKGKGYS-SVPI 414
           ++   L A +      +  D+  +    E L+  EE  +   D +F E++  G + +  +
Sbjct: 676 EDAMNLFATIS--ANGLVPDVTTYRLIAENLI--EEGSLEEFDGMFSEMEKSGCAPNSLM 731

Query: 415 YNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAI 454
            N L+  LL  G++ +A     K+  +  +LE ++ S  I++
Sbjct: 732 LNFLVRRLLLRGDISRAGAYLSKIDEKNFSLEASTTSMLISL 773



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 108/276 (39%), Gaps = 46/276 (16%)

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFK---------------------------------- 364
           +APD  T + L+ C   MGR+++ F                                   
Sbjct: 90  VAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLCDAKRVGEA 149

Query: 365 ---LLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP----IY 415
              LL +M +L      ++  +   L G   E R   AL++   +      S P     Y
Sbjct: 150 MGVLLRRMSEL--GCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSY 207

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N ++      G+V KA  LF  M    +  N ++++I I    ++  +  A     ++I+
Sbjct: 208 NTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMID 267

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P++  Y CL  G   IG+    + ++++ +      P  F Y L + ++C+ G+  
Sbjct: 268 KGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKE-MSAHGLEPDCFTYGLLLDYLCKKGKCT 326

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
           +  ++ + M ++G  P+  I   I+ G    G L E
Sbjct: 327 EARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSE 362



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 16/130 (12%)

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML--------VRDCLGNVASGPTEFKYAL 523
           ++ E+   P+V +YN L KG C     + A+ L        VR C  N+ S      Y  
Sbjct: 156 RMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVS------YNT 209

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I      G+ +K   +  +MT +G PPN V  + +I G+CK   ++ A  VF  + ++ 
Sbjct: 210 VINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKG 269

Query: 584 LLTEANTIVY 593
           +    N + Y
Sbjct: 270 V--RPNIVTY 277



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 16/247 (6%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G K N  +YN L +   R+                GRI +   + ++M  N   P V  Y
Sbjct: 549 GLKPNECTYNTLLHGYCRD----------------GRIDDAYSVFQEMLSNGITPVVVTY 592

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             ++  L   R       ++  M     +  +  Y  ++ GL K   V    ++F+ +  
Sbjct: 593 NTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCS 652

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
             + +D   + ++I  L+ +G+   A +L   +  +G   D+  Y  I   L      ++
Sbjct: 653 KDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEE 712

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
              +F    +   AP+   +N L+      G +      L+++++  FS+ A        
Sbjct: 713 FDGMFSEMEKSGCAPNSLMLNFLVRRLLLRGDISRAGAYLSKIDEKNFSLEASTTSMLIS 772

Query: 387 LVGKEER 393
           L  +EE 
Sbjct: 773 LFSREEH 779


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 184/414 (44%), Gaps = 9/414 (2%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMAYVTLIM 246
           L++L++M     + D   Y A++         +  ++VWE++ +D     ++  Y  ++ 
Sbjct: 213 LDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLD 272

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLCK GR     E++  M  N    D   YG+LI GL   G V  A  +  D+V +G   
Sbjct: 273 GLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVL 332

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D+ +YNS+I G C V +  +A+K ++ T    +    +T N +     + G +    +LL
Sbjct: 333 DVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIR-QITTYNIMTKGLLDSGMVSEATELL 391

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYS-SVPIYNILMGALL 423
            Q+E    S + D   F   + G  E      A ++ E+ +  G    V  Y+ ++    
Sbjct: 392 KQLEN-DASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFC 450

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G    A  ++  M     + NS  ++  I        I +A + + ++      P++ 
Sbjct: 451 KDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTII 510

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            YN L  GLCK  +   A  L ++ L      P    YA  I  +CR  + +  + + +E
Sbjct: 511 TYNTLIDGLCKAEKYQEASSLTKEMLER-GFKPDIRTYASLIRGLCRDKKVDVALRIWDE 569

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           +   G   + ++ + +I G+C  G ++EA  ++  ++E+      N + Y+ ++
Sbjct: 570 ILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKN--CSPNLVTYNTLM 621



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 164/351 (46%), Gaps = 9/351 (2%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  ++  Y  ++  LC  G V R   LF  ++  G+  DR  Y  L+ GL    ++  A 
Sbjct: 154 IAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNAL 213

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD-DLAPDFSTVNPLLVC 352
           DLL ++ + G +AD   YN+++ G  R   F+KA K++E  V+D   +P+ +T   +L  
Sbjct: 214 DLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDG 273

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS 410
             ++GR     ++ ++M  +  +  AD   +   + G  +   +  A  V+ ++   G  
Sbjct: 274 LCKLGRFKEAGEVWSRM--MANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLV 331

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
             V +YN L+    E+G   +A + F    G +      +++I  +  ++SG + EA E 
Sbjct: 332 LDVSVYNSLIKGFCEVGRTGEA-WKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATEL 390

Query: 470 HNKI-IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528
             ++  + S  P    +  L  GLC+ G  + A  ++ D   N       F Y+  I   
Sbjct: 391 LKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDAR-NSGEELDVFSYSSMINRF 449

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           C+ G      EV   M ++GC PN  + +A+I+G C+   + +A K++  +
Sbjct: 450 CKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEM 500



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/427 (22%), Positives = 197/427 (46%), Gaps = 12/427 (2%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G +   + +   +RR    PD   Y+ ++  LA    LD  L + +EM    V+AD +
Sbjct: 170 ARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAV 229

Query: 240 AYVTLIMGLCKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
            Y  L+ G  + G   +  +++ ++ ++ G   + A Y V+++GL   G+  +A ++   
Sbjct: 230 CYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSR 289

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           ++ + ++AD   Y  +I GLCR    D A +++   V+  L  D S  N L+    E+GR
Sbjct: 290 MMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGR 349

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYSSVP--I 414
               +K     +   FS    +  +     G  +  M+  A ++ ++L+     S     
Sbjct: 350 TGEAWKF---WDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVT 406

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           +  L+  L E G   +A  +    R    E++  S+S  I    + G   +A E +  ++
Sbjct: 407 FGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMV 466

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           +    P+   YN L  G C++ +I+ A+ +  +   N    PT   Y   I  +C++ + 
Sbjct: 467 KDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSN-GCCPTIITYNTLIDGLCKAEKY 525

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           ++   +  EM + G  P+    +++I G+C+   ++ A +++  + +  L  + + +V++
Sbjct: 526 QEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGL--QVDVMVHN 583

Query: 595 EILIEHM 601
            ILI  +
Sbjct: 584 -ILIHGL 589



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 108/482 (22%), Positives = 198/482 (41%), Gaps = 61/482 (12%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPE-----------------LMDSQ---GRIAE 186
           G + +   YNAL     R  +F  A +V E                 ++D     GR  E
Sbjct: 223 GVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKE 282

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
             E+  +M  N  + D   Y  +I  L    ++D+  RV+ +M K  +  DV  Y +LI 
Sbjct: 283 AGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIK 342

Query: 247 GLCKGGR----------------------------------VVRGHELFREMKENGILI- 271
           G C+ GR                                  V    EL ++++ +     
Sbjct: 343 GFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSP 402

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           D+  +G LI GL   G   +A ++L+D  +SG   D+  Y+S+I   C+  +   A +++
Sbjct: 403 DKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVY 462

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG-- 389
           +  V+D   P+    N L+     + ++++  K+  +M          +  +   + G  
Sbjct: 463 KNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTS--NGCCPTIITYNTLIDGLC 520

Query: 390 KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           K E+   A  + +E+  +G+   +  Y  L+  L    +V  AL ++ ++    L+V+ +
Sbjct: 521 KAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVM 580

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
             +I I     +G + EA   + ++ E +  P++  YN L  G  +IG ID A  L    
Sbjct: 581 VHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAI 640

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
           L N    P    Y   I  +C      + + +LNE+   G  P  +  S ++  + K+G 
Sbjct: 641 LDN-GLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAVIKYGP 699

Query: 569 LE 570
           ++
Sbjct: 700 IQ 701



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/183 (19%), Positives = 86/183 (46%), Gaps = 2/183 (1%)

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YNI++ +L   G+V +A+ LF  +R   +  + +++S  +    +   +  A +  +++ 
Sbjct: 161 YNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMP 220

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                     YN L  G  + G  + AM +    + +  + P    Y + +  +C+ G  
Sbjct: 221 NYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRF 280

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           ++  EV + M       + V    +I G+C+ G ++ A +V++++ +  L+ + +  VY+
Sbjct: 281 KEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVS--VYN 338

Query: 595 EIL 597
            ++
Sbjct: 339 SLI 341


>gi|359490245|ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g62370-like [Vitis vinifera]
          Length = 1101

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 114/490 (23%), Positives = 203/490 (41%), Gaps = 47/490 (9%)

Query: 152 FASYNALAYCLSRNNLFRAADQVPELMD-------------------SQGRIAEMLEILE 192
            ++YN+L  CL +  L   A  + +LM                    + G +A    +L+
Sbjct: 514 LSTYNSLIKCLFQERLVEDAKSLIDLMQENGIVPDLATYLIMVHEHCNHGDLASAFGLLD 573

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
           +M     KP V  Y ++I  L+  + +     V++ M +  V+ D + YVT+I G  K  
Sbjct: 574 QMNERGLKPSVAIYDSIIGCLSRRKRILEAENVFKMMLEAGVDPDAIIYVTMISGYSKNR 633

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
           R +   +LF +M E+G       Y  +I GLV E  + K C  L D++  G+  +  +Y 
Sbjct: 634 RAIEARQLFDKMIEHGFQPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFVPNTVLYT 693

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
           S+I    R  + + A++L ++  ++ +  D  T   L+      G   N   +  +   +
Sbjct: 694 SLINQFLRKGELEFAFRLVDLMDRNQIECDMITCIALVS-----GVSRNITPVRRRWYHV 748

Query: 373 KFSVAADLEKFFE-----FLVGKEERI-----------MMALDVFEELKGKGY-SSVPIY 415
           K   A   E         F++ +E  +             AL++ +++KG  +  ++ +Y
Sbjct: 749 KSGSARVREILLHLLHQSFVIPRENNLSFPRGSPRKIKYFALNLMQKIKGSSFMPNLYLY 808

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N ++        ++ A   F  M+   +  N ++F+I I  H   G+I  A    NK+  
Sbjct: 809 NGIISGFCRANMIQDAYNHFELMQTEGVCPNQVTFTILINGHTRFGEIDHAIGLFNKMNA 868

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P    YN L KGLCK G +  A+  V   +      P +  Y   +  +C S    
Sbjct: 869 DGLAPDGITYNALIKGLCKAGRLLDALS-VSHTMHKRGLFPNKSSYEKLLKCLCASHLGV 927

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF-TNLRERKLLTEANTIVYD 594
              ++  EM      P    C+ ++  +C+     EA  VF   L++RK   E    +  
Sbjct: 928 HAFKIFEEMLSHDYVPCWYNCNWLLCILCEEHRWHEAHIVFDVMLKQRKYPDE----LTK 983

Query: 595 EILIEHMKKK 604
            +L+E   KK
Sbjct: 984 RLLVEACNKK 993



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 175/402 (43%), Gaps = 15/402 (3%)

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDL-VEADVMAYVTLIMGLCKGGRVVRGHELF 261
           ++ +  +I  L  + ++D    +++ M++   + A +  Y TL  GLC+  RV       
Sbjct: 198 LWCFNRLIDGLCDKGHVDEAFYMFDTMRERTGLPATIHLYKTLFYGLCRQERVEEAELFV 257

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            EM+  G  ID+ +Y  LI G     K+  A  +   ++  G   D   YN++I G  ++
Sbjct: 258 GEMESEGHFIDKMMYTSLIHGYCRGKKMRTAMRVFLRMLKMGCDPDTYTYNTLIHGFVKL 317

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
             FDK + L     +  L P+  T + ++    E G++D    LL+ M     + +    
Sbjct: 318 GLFDKGWILHNQMSEWGLQPNVVTYHIMIRRYCEEGKVDCALTLLSSMSSFNLTPSVHSY 377

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKM 438
                 + KE R++   ++++++   G   VP   ++  LM    +  E+  AL +   +
Sbjct: 378 TVLITALYKENRLVEVEELYKKMLDIGV--VPDHVLFFTLMQKQPKGHELHLALKILQAI 435

Query: 439 --RGLNLEVNSLSFSIAIQCHVESGDILEACEC-HNKIIEMSQVPSVAAYNCLTKGLCKI 495
              G NL++  LS S     H  + D+ +  EC   +I+  +   +  A+      LC  
Sbjct: 436 AKNGCNLDLCLLSTSAT---HSPTQDVEQEIECLLGEIVRRNFALADVAFGIFISALCAA 492

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G+ DAA++ + D + ++   P    Y   I  + +    E    +++ M + G  P+   
Sbjct: 493 GKTDAALLFM-DKMVSLGCRPLLSTYNSLIKCLFQERLVEDAKSLIDLMQENGIVPDLAT 551

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
              ++   C HG L  A  +   + ER L  + +  +YD I+
Sbjct: 552 YLIMVHEHCNHGDLASAFGLLDQMNERGL--KPSVAIYDSII 591



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 107/476 (22%), Positives = 179/476 (37%), Gaps = 46/476 (9%)

Query: 155 YNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
           Y  L Y L R      A+     M+S+G                   D   YT++I    
Sbjct: 237 YKTLFYGLCRQERVEEAELFVGEMESEGHFI----------------DKMMYTSLIHGYC 280

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
             + +   +RV+  M K   + D   Y TLI G  K G   +G  L  +M E G+  +  
Sbjct: 281 RGKKMRTAMRVFLRMLKMGCDPDTYTYNTLIHGFVKLGLFDKGWILHNQMSEWGLQPNVV 340

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
            Y ++I     EGKV  A  LL  +        +  Y  +I  L +  +  +  +L++  
Sbjct: 341 TYHIMIRRYCEEGKVDCALTLLSSMSSFNLTPSVHSYTVLITALYKENRLVEVEELYKKM 400

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-------------LKFSVAADLE 381
           +   + PD      L+    +   +    K+L  + K                S   D+E
Sbjct: 401 LDIGVVPDHVLFFTLMQKQPKGHELHLALKILQAIAKNGCNLDLCLLSTSATHSPTQDVE 460

Query: 382 KFFEFLVGKEERIMMAL-DVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
           +  E L+G+  R   AL DV              + I + AL   G+   AL    KM  
Sbjct: 461 QEIECLLGEIVRRNFALADV-------------AFGIFISALCAAGKTDAALLFMDKMVS 507

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
           L       +++  I+C  +   + +A    + + E   VP +A Y  +    C  G++ +
Sbjct: 508 LGCRPLLSTYNSLIKCLFQERLVEDAKSLIDLMQENGIVPDLATYLIMVHEHCNHGDLAS 567

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A  L+ D +      P+   Y   I  + R     +   V   M + G  P+ +I   +I
Sbjct: 568 AFGLL-DQMNERGLKPSVAIYDSIIGCLSRRKRILEAENVFKMMLEAGVDPDAIIYVTMI 626

Query: 561 SGMCKHGTLEEARKVFTNLRERKLL--TEANTIVYDEILIEHMKKKTADLVLSGLK 614
           SG  K+    EAR++F  + E      + + T V   ++ E+M  K    +   LK
Sbjct: 627 SGYSKNRRAIEARQLFDKMIEHGFQPSSHSYTAVISGLVKENMIDKGCSYLSDMLK 682



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/347 (19%), Positives = 141/347 (40%), Gaps = 39/347 (11%)

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS-GYRADLGIYNSIIGGLCRVKQFDK 326
           G+ +D   YGVL+  LVG G+   A  + +D V + G   D    NS++   C + + ++
Sbjct: 87  GLELDSCGYGVLLRKLVGSGEHRFAEAVYRDYVIARGIIPDSETLNSMVICYCNLGKLEE 146

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLL--VCCAEM---------------------------- 356
           A   F+   + D  P     N +L  +C  E                             
Sbjct: 147 AMAHFDRLFEVDSFPCKPACNAMLRELCARERVLEAFDYFVRINDVGILMGLWCFNRLID 206

Query: 357 -----GRMDNFFKLLAQM-EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-Y 409
                G +D  F +   M E+        L K   + + ++ER+  A     E++ +G +
Sbjct: 207 GLCDKGHVDEAFYMFDTMRERTGLPATIHLYKTLFYGLCRQERVEEAELFVGEMESEGHF 266

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
               +Y  L+       +++ A+ +F +M  +  + ++ +++  I   V+ G   +    
Sbjct: 267 IDKMMYTSLIHGYCRGKKMRTAMRVFLRMLKMGCDPDTYTYNTLIHGFVKLGLFDKGWIL 326

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
           HN++ E    P+V  Y+ + +  C+ G++D A+ L+   + +    P+   Y + I  + 
Sbjct: 327 HNQMSEWGLQPNVVTYHIMIRRYCEEGKVDCALTLLSS-MSSFNLTPSVHSYTVLITALY 385

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           +     ++ E+  +M   G  P+ V+   ++    K   L  A K+ 
Sbjct: 386 KENRLVEVEELYKKMLDIGVVPDHVLFFTLMQKQPKGHELHLALKIL 432



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 2/135 (1%)

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
           +LEA +   +I ++  +  +  +N L  GLC  G +D A  +            T   Y 
Sbjct: 179 VLEAFDYFVRINDVGILMGLWCFNRLIDGLCDKGHVDEAFYMFDTMRERTGLPATIHLYK 238

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
                +CR    E+    + EM  EG   ++++ +++I G C+   +  A +VF  LR  
Sbjct: 239 TLFYGLCRQERVEEAELFVGEMESEGHFIDKMMYTSLIHGYCRGKKMRTAMRVF--LRML 296

Query: 583 KLLTEANTIVYDEIL 597
           K+  + +T  Y+ ++
Sbjct: 297 KMGCDPDTYTYNTLI 311


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 129/519 (24%), Positives = 224/519 (43%), Gaps = 73/519 (14%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
           A+    W   + G   N  SYN L   +C                  ++ R  E LE+L 
Sbjct: 249 ATNILLWRMPEFGCTPNVVSYNTLVKGFC------------------NENRAEEALELLH 290

Query: 193 KMRRNL---CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
            M  +    C PDV +Y  +I     E  +D    ++ +M    +  DV+ Y T+I GLC
Sbjct: 291 VMADDQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLC 350

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K   V R   +F++M + G+      Y  LI G +  GK  +   LL+++       D  
Sbjct: 351 KAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCF 410

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTV---------------------QDDLAPDFSTVNP 348
           IY  ++  LC+  +  +A  +F+  +                     Q  L+P+      
Sbjct: 411 IYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGA 470

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
           L+    ++GR+D+      QM    + +   +EK+      K E +     VFE L    
Sbjct: 471 LIDALCKLGRVDDAILKFNQMINEVYGLCT-VEKW-----EKAEEL-----VFEMLDQGI 519

Query: 409 YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
              V ++N LM  L   G V +A  L   M  + +  + +S++  +  H  +G   EA +
Sbjct: 520 RLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAK 579

Query: 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT-EFKYALTILH 527
             + ++ +   P+   YN L  G CK   ID A  L+R+ L N   GPT +     TILH
Sbjct: 580 LLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMN---GPTPDVVTYNTILH 636

Query: 528 ----VCRSGEAEKI-IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
                 R  EA+++ + ++N  TQ     +    + I++G+CK+  ++EA K+F +L  +
Sbjct: 637 GLFQTGRFSEAKELYLNMINSRTQW----DMYTYNIILNGLCKNNCVDEAFKMFQSLCSK 692

Query: 583 KLLTEANTIVYDEI---LIEHMKKKTADLVLSGLKFFGL 618
            L  + + I ++ +   L++  KK+ A  + + +  +GL
Sbjct: 693 GL--QLHIITFNIMIGALLKGGKKEDAMDLFATISAYGL 729



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 104/458 (22%), Positives = 190/458 (41%), Gaps = 85/458 (18%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMI-------RVLAAERNLDACLR-------- 224
           S G+  E++ +LE+M  +  +PD F Y  ++       R   A    D+ +R        
Sbjct: 386 STGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAM 445

Query: 225 ------VWEEMKKDLVEADVMAYVTLIMGLCKGGRV-----------------------V 255
                 ++++M++  +  +V+ Y  LI  LCK GRV                        
Sbjct: 446 IDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWE 505

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
           +  EL  EM + GI +D  ++  L+  L  EG+V +A  L++ ++  G R D+  YN+++
Sbjct: 506 KAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLV 565

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            G C   + D+A KL +V V   L P+  T N LL    +  R+D+ + LL +M  L   
Sbjct: 566 DGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREM--LMNG 623

Query: 376 VAADLEKFFEFLVG--KEERIMMALDVF-EELKGKGYSSVPIYNILMGALLEIGEVKKAL 432
              D+  +   L G  +  R   A +++   +  +    +  YNI++  L +   V +A 
Sbjct: 624 PTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAF 683

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            +F  +    L+++ ++F+I I   ++ G   +A +    I     VP V  Y       
Sbjct: 684 KMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETY------- 736

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           C I E                             ++ + G  E++  + + M + G  PN
Sbjct: 737 CLIAE-----------------------------NLIKEGSLEELGVLFSAMEENGTAPN 767

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             + +A++      G +  A    + L E+    EA+T
Sbjct: 768 SRMLNALVRRFLHRGDISRAGAYLSKLDEKNFSLEAST 805



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 155/367 (42%), Gaps = 30/367 (8%)

Query: 161 CLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA-ERNL 219
           C    N+F +   + + +     I E + I +KMR+    P+V  Y A+I  L    R  
Sbjct: 425 CTEARNIFDSV--IRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVD 482

Query: 220 DACLRV---------------WE-------EMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
           DA L+                WE       EM    +  DV+ + TL+  LC+ GRV+  
Sbjct: 483 DAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEA 542

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
             L   M   G+  D   Y  L++G    G+  +A  LL  +V  G + +   YN+++ G
Sbjct: 543 QRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHG 602

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
            C+ ++ D AY L    + +   PD  T N +L    + GR     +L   M  +     
Sbjct: 603 YCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNM--INSRTQ 660

Query: 378 ADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL 434
            D+  +   L G  K   +  A  +F+ L  KG    +  +NI++GALL+ G+ + A+ L
Sbjct: 661 WDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDL 720

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           F  +    L  +  ++ +  +  ++ G + E     + + E    P+    N L +    
Sbjct: 721 FATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRMLNALVRRFLH 780

Query: 495 IGEIDAA 501
            G+I  A
Sbjct: 781 RGDISRA 787



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 131/281 (46%), Gaps = 11/281 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E   ++E M R   +PDV +Y  ++         D   ++ + M    ++ +   
Sbjct: 536 EGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFT 595

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TL+ G CK  R+   + L REM  NG   D   Y  ++ GL   G+  +A +L  +++
Sbjct: 596 YNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMI 655

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +S  + D+  YN I+ GLC+    D+A+K+F+      L     T N ++    + G+ +
Sbjct: 656 NSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKE 715

Query: 361 NFFKLLAQMEKLKFSVAADLEKF---FEFLV--GKEERIMMALDVFEELKGKGYSSVPIY 415
           +   L A +    + +  D+E +    E L+  G  E + +     EE  G   +S  + 
Sbjct: 716 DAMDLFATIS--AYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEE-NGTAPNS-RML 771

Query: 416 NILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAI 454
           N L+   L  G++ +A     K+  +  +LE ++ S  I++
Sbjct: 772 NALVRRFLHRGDISRAGAYLSKLDEKNFSLEASTASMLISL 812



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 164/373 (43%), Gaps = 43/373 (11%)

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
           D V  D   Y  LI   C+ GR+  G  +F  + + G  ++  ++  L++GL    ++ +
Sbjct: 189 DKVAPDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDE 248

Query: 292 ACD-LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD---DLAPDFSTVN 347
           A + LL  + + G   ++  YN+++ G C   + ++A +L  V   D      PD  + N
Sbjct: 249 ATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYN 308

Query: 348 PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELK 405
            ++      G++D  + L  QM  +   +  D+  +   + G  K + +  A  VF+++ 
Sbjct: 309 TVINGFFREGQVDKAYNLFLQM--IDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQML 366

Query: 406 GKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
            KG   S   YN L+   L  G+ K+ + L  +M   +LE +   +++ +    ++G   
Sbjct: 367 DKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCT 426

Query: 465 EACECHNKII------------------EMSQ---VPSVAAYNCLTKGLCKIGEIDAAMM 503
           EA    + +I                  +M Q    P+V  Y  L   LCK+G +D A++
Sbjct: 427 EARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAIL 486

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
                +  V        Y L     C   + EK  E++ EM  +G   + V+ + ++  +
Sbjct: 487 KFNQMINEV--------YGL-----CTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDL 533

Query: 564 CKHGTLEEARKVF 576
           C+ G + EA+++ 
Sbjct: 534 CREGRVMEAQRLI 546



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 134/335 (40%), Gaps = 64/335 (19%)

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           DR  Y +LI      G++     +   ++ +G+R +  ++N ++ GLC  K+ D+A  + 
Sbjct: 194 DRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEATNIL 253

Query: 332 EVTVQD-DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK 390
              + +    P+  + N L+       R +   +LL         V AD           
Sbjct: 254 LWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELL--------HVMAD----------- 294

Query: 391 EERIMMALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKM--RGLNLEV 445
                           +G S  P    YN ++      G+V KA  LF +M  RG+  +V
Sbjct: 295 ---------------DQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDV 339

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
            + +  I   C  +  D  +A     ++++    PS   YNCL  G    G+    + L+
Sbjct: 340 VTYNTVIDGLCKAQVVDRAKA--VFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLL 397

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSG---EAEKIIE------------------VLNEM 544
            + +      P  F YAL + ++C++G   EA  I +                  + ++M
Sbjct: 398 EE-MSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKM 456

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            Q+G  PN V   A+I  +CK G +++A   F  +
Sbjct: 457 RQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQM 491



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 101/261 (38%), Gaps = 20/261 (7%)

Query: 147 GYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           G K N  +YN L   YC +R                  RI +   +L +M  N   PDV 
Sbjct: 588 GLKPNEFTYNTLLHGYCKAR------------------RIDDAYSLLREMLMNGPTPDVV 629

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y  ++  L           ++  M     + D+  Y  ++ GLCK   V    ++F+ +
Sbjct: 630 TYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSL 689

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
              G+ +    + ++I  L+  GK   A DL   +   G   D+  Y  I   L +    
Sbjct: 690 CSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSL 749

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           ++   LF    ++  AP+   +N L+      G +      L+++++  FS+ A      
Sbjct: 750 EELGVLFSAMEENGTAPNSRMLNALVRRFLHRGDISRAGAYLSKLDEKNFSLEASTASML 809

Query: 385 EFLVGKEERIMMALDVFEELK 405
             L  + E   +A  + E+ +
Sbjct: 810 ISLYSRGEYQQLAKSLPEKYR 830



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 5/162 (3%)

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           ++SI I C    G +         I++     +   +N L KGLC    +D A  ++   
Sbjct: 197 TYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEATNILLWR 256

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE---GCPPNEVICSAIISGMCK 565
           +      P    Y   +   C    AE+ +E+L+ M  +    CPP+ V  + +I+G  +
Sbjct: 257 MPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFR 316

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
            G +++A  +F  + +R +    + + Y+ ++    K +  D
Sbjct: 317 EGQVDKAYNLFLQMIDRGI--PPDVVTYNTVIDGLCKAQVVD 356


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 195/427 (45%), Gaps = 22/427 (5%)

Query: 183 RIAEMLEI-LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA---DV 238
           R ++ ++I L +M    C P+VF+Y  +++ L  E      L +   M  D       DV
Sbjct: 137 RTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDV 196

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           ++Y T+I G  K G   + +  + EM + GIL D   Y  +I  L     + KA ++L  
Sbjct: 197 VSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNT 256

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +V +G   D   YNSI+ G C   Q  +A    +    D + PD  T + L+    + GR
Sbjct: 257 MVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGR 316

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA-----LDVFEELKGKGYSSVP 413
                K+   M K    +  ++  +   L G   +  +      LD+   ++   +    
Sbjct: 317 CMEARKIFDSMTKR--GLKPEITTYGTLLQGYATKGALVEMHGLLDLM--VRNGIHPDHY 372

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           +++IL+ A  + G+V +A+ +F KMR   L  N++++   I    +SG + +A     ++
Sbjct: 373 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG- 532
           I+    P    YN L  GLC   + + A  L+ + L       T F  ++   H C+ G 
Sbjct: 433 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSH-CKEGR 491

Query: 533 --EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             E+EK+ E+   M + G  PN +  + +I+G C  G ++EA K+ + +    L  + NT
Sbjct: 492 VIESEKLFEL---MVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGL--KPNT 546

Query: 591 IVYDEIL 597
           + Y  ++
Sbjct: 547 VTYSTLI 553



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 114/473 (24%), Positives = 202/473 (42%), Gaps = 56/473 (11%)

Query: 181 QGRIAEMLEILEKM---RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           + R  E LE+L  M   R     PDV +YT +I     E + D     + EM    +  D
Sbjct: 171 ENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPD 230

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ Y ++I  LCK   + +  E+   M +NG++ D   Y  ++ G    G+  +A   LK
Sbjct: 231 VVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLK 290

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            +   G   D+  Y+ ++  LC+  +  +A K+F+   +  L P+ +T   LL   A  G
Sbjct: 291 KMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLV---GKEERIMMALDVFEELKGKGYS-SVP 413
            +     LL  M  ++  +  D    F  L+    K+ ++  A+ VF +++ +G + +  
Sbjct: 351 ALVEMHGLLDLM--VRNGIHPD-HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAV 407

Query: 414 IYNILMGALLEIGEVKKALYLFGKM----------------------------------- 438
            Y  ++G L + G V+ A+  F +M                                   
Sbjct: 408 TYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM 467

Query: 439 --RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
             RG+ L  N++ F+  I  H + G ++E+ +    ++ +   P+V  YN L  G C  G
Sbjct: 468 LDRGICL--NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAG 525

Query: 497 EIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
           ++D AM L+    G V+ G  P    Y+  I   C+    E  + +  EM   G  P+ +
Sbjct: 526 KMDEAMKLLS---GMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDII 582

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
             + I+ G+ +      A++++  + E     E +T  Y+ IL    K K  D
Sbjct: 583 TYNIILQGLFQTRRTAAAKELYVRITESGTQIELST--YNIILHGLCKNKLTD 633



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 192/419 (45%), Gaps = 16/419 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + EM  +L+ M RN   PD + ++ +I   A +  +D  + V+ +M++  +  + +
Sbjct: 348 TKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAV 407

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I  LCK GRV      F +M + G+     +Y  LI GL    K  +A +L+ ++
Sbjct: 408 TYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM 467

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +D G   +   +NSII   C+  +  ++ KLFE+ V+  + P+  T N L+      G+M
Sbjct: 468 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKM 527

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           D   KLL+ M  +   +  +   +   + G  K  R+  AL +F+E++  G S  +  YN
Sbjct: 528 DEAMKLLSGM--VSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYN 585

Query: 417 ILMGALLEIGEVKKA--LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           I++  L +      A  LY+     G  +E+++ +  +   C  +  D  +A +    + 
Sbjct: 586 IILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTD--DALQMFQNLC 643

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRS 531
            M        +N +   L K+G  D A    +D     +S    P  + Y L   ++   
Sbjct: 644 LMDLKLEARTFNIMIDALLKVGRNDEA----KDLFVAFSSNGLVPNYWTYRLMAENIIGQ 699

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           G  E++ ++   M   GC  +  + + I+  + + G +  A    + + E+    EA+T
Sbjct: 700 GLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEAST 758



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/437 (22%), Positives = 190/437 (43%), Gaps = 43/437 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G+  E +  L+KMR +  +PDV  Y+ ++  L          ++++ M K  ++ ++ 
Sbjct: 278 SSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEIT 337

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TL+ G    G +V  H L   M  NGI  D  ++ +LI     +GKV +A  +   +
Sbjct: 338 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKM 397

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL---LVCCAEM 356
              G   +   Y ++IG LC+  + + A   FE  + + L+P     N L   L  C + 
Sbjct: 398 RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKW 457

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN 416
            R                                EE I+  LD     +G   +++  +N
Sbjct: 458 ER-------------------------------AEELILEMLD-----RGICLNTI-FFN 480

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++ +  + G V ++  LF  M  + ++ N ++++  I  +  +G + EA +  + ++ +
Sbjct: 481 SIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSV 540

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P+   Y+ L  G CKI  ++ A++L ++ + +    P    Y + +  + ++     
Sbjct: 541 GLKPNTVTYSTLINGYCKISRMEDALVLFKE-MESSGVSPDIITYNIILQGLFQTRRTAA 599

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT--IVYD 594
             E+   +T+ G        + I+ G+CK+   ++A ++F NL    L  EA T  I+ D
Sbjct: 600 AKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMID 659

Query: 595 EILIEHMKKKTADLVLS 611
            +L      +  DL ++
Sbjct: 660 ALLKVGRNDEAKDLFVA 676



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 126/262 (48%), Gaps = 12/262 (4%)

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERI 394
           D++ PD  T   L+ CC   GR+D  F  L  + K  F V  D   F   L G   ++R 
Sbjct: 81  DEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRV--DAIAFTPLLKGLCADKRT 138

Query: 395 MMALD-VFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM---RGLNLEVNSLS 449
             A+D V   +   G   +V  YNIL+  L +    ++AL L   M   RG     + +S
Sbjct: 139 SDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS 198

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           ++  I    + GD  +A   ++++++   +P V  YN +   LCK   +D AM ++   +
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV 258

Query: 510 GNVASGPTEFKYALTILH-VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
            N    P    Y  +ILH  C SG+ ++ I  L +M  +G  P+ V  S ++  +CK+G 
Sbjct: 259 KN-GVMPDCMTYN-SILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGR 316

Query: 569 LEEARKVFTNLRERKLLTEANT 590
             EARK+F ++ +R L  E  T
Sbjct: 317 CMEARKIFDSMTKRGLKPEITT 338



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 175/438 (39%), Gaps = 54/438 (12%)

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHE-------------------------------- 259
           D V  D+  Y  LI   C+ GR+  G                                  
Sbjct: 81  DEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSD 140

Query: 260 ----LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD---SGYRADLGIYN 312
               + R M E G + +   Y +L++GL  E +  +A +LL  + D    G   D+  Y 
Sbjct: 141 AMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYT 200

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
           ++I G  +    DKAY  +   +   + PD  T N ++    +   MD   ++L  M  +
Sbjct: 201 TVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM--V 258

Query: 373 KFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVK 429
           K  V  D   +   L G     +   A+   ++++  G    V  Y++LM  L + G   
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318

Query: 430 KALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           +A  +F  M  RGL  E+   ++   +Q +   G ++E     + ++     P    ++ 
Sbjct: 319 EARKIFDSMTKRGLKPEIT--TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSI 376

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L     K G++D A MLV   +      P    Y   I  +C+SG  E  +    +M  E
Sbjct: 377 LICAYAKQGKVDQA-MLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDE 435

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           G  P  ++ +++I G+C     E A ++   + +R +    NTI ++ I+  H K+    
Sbjct: 436 GLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL--NTIFFNSIIDSHCKEGR-- 491

Query: 608 LVLSGLKFFGLESKLKAK 625
            V+   K F L  ++  K
Sbjct: 492 -VIESEKLFELMVRIGVK 508


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 190/437 (43%), Gaps = 35/437 (8%)

Query: 200 KPDVFAYTAMIRVLAAE-RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           +     +T ++R L AE R  DA   V   M +     DV +Y TL+ GLC   +     
Sbjct: 176 RAQAVTFTPLLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAA 235

Query: 259 ELFREMKENGILIDRAI--YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
           EL   M E+G      +  Y  +I G   EG VGKA  L   ++D G   ++   NS+I 
Sbjct: 236 ELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVID 295

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK----- 371
           GLC+V+  DKA  + +  + + + P+ +T N L+      G+     ++L +M +     
Sbjct: 296 GLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRP 355

Query: 372 --LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVK 429
             + +S+  D            E     +   ++     Y S+       G L+++  VK
Sbjct: 356 NVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVK 415

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
             +   G   G ++      F+I I  + + G + EA    NK+ +   +P + AY  + 
Sbjct: 416 DLMVQNGMRPGRHV------FNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVI 469

Query: 490 KGLCKIGEIDAAM----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
            GLCKIG +D AM     ++ D L      P    +   I      G+ EK  E+  EM 
Sbjct: 470 DGLCKIGRLDDAMSRFCQMIDDGL-----SPDIITFNTLIHGFALHGKWEKAEELFYEMM 524

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL-------- 597
             G PPN    +++I  + K G + EARK+F +L  R    + N + Y+ ++        
Sbjct: 525 DRGIPPNVNTFNSMIDKLFKEGKVTEARKLF-DLMPRA-GAKPNVVSYNTMIHGYFIAGE 582

Query: 598 IEHMKKKTADLVLSGLK 614
           +  + K   D++L GLK
Sbjct: 583 VGEVMKLLDDMLLIGLK 599



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 175/387 (45%), Gaps = 9/387 (2%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           AE++ ++ +   N C P+V +YT +I     E ++     ++ +M    +  +V+   ++
Sbjct: 235 AELIHMMAEDGDN-CPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSV 293

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLCK   + +   + ++M +  I+ +   Y  LI G +  G+  +A  +LK++   G 
Sbjct: 294 IDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQ 353

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR---MDN 361
           R ++  Y+ +I  LC+     +A ++F   +Q    P+ ST   LL   A  G    M+N
Sbjct: 354 RPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNN 413

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMG 420
              L+ Q          ++E +     G+ +   +    F +++ +G+   +  Y  ++ 
Sbjct: 414 VKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASL---TFNKMQQQGFMPDIVAYTTVID 470

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L +IG +  A+  F +M    L  + ++F+  I      G   +A E   ++++    P
Sbjct: 471 GLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPP 530

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +V  +N +   L K G++  A  L  D +    + P    Y   I     +GE  +++++
Sbjct: 531 NVNTFNSMIDKLFKEGKVTEARKLF-DLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKL 589

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHG 567
           L++M   G  P  V  + ++ GM   G
Sbjct: 590 LDDMLLIGLKPTAVTFNTLLDGMVSMG 616



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/411 (21%), Positives = 173/411 (42%), Gaps = 35/411 (8%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +L++M      P+   Y ++I    +       +R+ +EM +D    +V+ Y  LI  LC
Sbjct: 309 VLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLC 368

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K G      E+F  M ++G   + + YG L+ G   EG +    ++   +V +G R    
Sbjct: 369 KSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRH 428

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
           ++N  I   C+  + D+A   F    Q    PD      ++    ++GR+D+      QM
Sbjct: 429 VFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQM 488

Query: 370 EKLKFSVAADLEKFFEF-----LVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALL 423
             +   ++ D+  F        L GK E+   A ++F E+  +G   +V  +N ++  L 
Sbjct: 489 --IDDGLSPDIITFNTLIHGFALHGKWEK---AEELFYEMMDRGIPPNVNTFNSMIDKLF 543

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G+V +A  LF  M     + N +S++  I  +  +G++ E  +  + ++ +   P+  
Sbjct: 544 KEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAV 603

Query: 484 AYNCLTKGLCKIG---EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            +N L  G+  +G   ++     L+  C                    C  G  E I+ +
Sbjct: 604 TFNTLLDGMVSMGLKPDVVTCKTLIDSC--------------------CEDGRIEDILTL 643

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
             EM  +    + +  +  + G+    +      V  +L+  +++T+A  I
Sbjct: 644 FREMLGKADKTDTITENIKLRGVTVKASY-HCSSVVISLKALEVVTQAGAI 693



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 145/334 (43%), Gaps = 21/334 (6%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G+  E + IL++M R+  +P+V  Y+ +I  L           ++  M +   + +  
Sbjct: 334 SSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNAS 393

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y +L+ G    G +V  + +   M +NG+   R ++ + I      G++ +A      +
Sbjct: 394 TYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKM 453

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G+  D+  Y ++I GLC++ + D A   F   + D L+PD  T N L+   A  G+ 
Sbjct: 454 QQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKW 513

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYN 416
           +   +L  +M  +   +  ++  F   +  + KE ++  A  +F+ +   G   +V  YN
Sbjct: 514 EKAEELFYEM--MDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYN 571

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++      GEV + + L   M  + L+  +++F+  +                + ++ M
Sbjct: 572 TMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLL----------------DGMVSM 615

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
              P V     L    C+ G I+  + L R+ LG
Sbjct: 616 GLKPDVVTCKTLIDSCCEDGRIEDILTLFREMLG 649



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 107/244 (43%), Gaps = 19/244 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELM-------------------DSQGRIA 185
           + G + N  +Y+ L  CL ++ L   A ++   M                    ++G + 
Sbjct: 350 RDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLV 409

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           +M  + + M +N  +P    +   I        LD     + +M++     D++AY T+I
Sbjct: 410 DMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVI 469

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLCK GR+      F +M ++G+  D   +  LI G    GK  KA +L  +++D G  
Sbjct: 470 DGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIP 529

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            ++  +NS+I  L +  +  +A KLF++  +    P+  + N ++      G +    KL
Sbjct: 530 PNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKL 589

Query: 366 LAQM 369
           L  M
Sbjct: 590 LDDM 593



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 9/247 (3%)

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMM 396
           +APD +T   L+ CC + G ++  F  L Q+  +K  + A    F   L  +  E+R   
Sbjct: 140 VAPDIATFGILISCCCDAGCLNLGFAALGQI--IKTGLRAQAVTFTPLLRTLCAEKRTSD 197

Query: 397 ALD-VFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR--GLNLEVNSLSFSI 452
           A++ V   +   G +  V  Y  L+  L    + ++A  L   M   G N   N +S++ 
Sbjct: 198 AMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTT 257

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
            I    + GD+ +A     K+++    P+V   N +  GLCK+  +D A  +++  +   
Sbjct: 258 VIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEH 317

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              P    Y   I     SG+  + + +L EM+++G  PN V  S +I  +CK G   EA
Sbjct: 318 IM-PNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEA 376

Query: 573 RKVFTNL 579
           R++F ++
Sbjct: 377 REIFNSM 383



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 84/201 (41%), Gaps = 6/201 (2%)

Query: 396 MALDVFEELKGKGYSSVP----IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
           +A+ +F  +   G   V      + IL+    + G +       G++    L   +++F+
Sbjct: 124 LAVSMFNRMARAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFT 183

Query: 452 IAIQCHVESGDILEACE-CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
             ++         +A      ++ E+   P V +Y  L KGLC   + + A  L+     
Sbjct: 184 PLLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAE 243

Query: 511 NVASGPTEFKYALTILH-VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
           +  + P       T++H   + G+  K   +  +M   G PPN V C+++I G+CK   +
Sbjct: 244 DGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAM 303

Query: 570 EEARKVFTNLRERKLLTEANT 590
           ++A  V   + +  ++    T
Sbjct: 304 DKAEAVLQQMIDEHIMPNCTT 324


>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
          Length = 933

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 96/434 (22%), Positives = 198/434 (45%), Gaps = 37/434 (8%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++     +L+ M+     P+V  YT  I      + ++    ++E M ++ V  DV+  
Sbjct: 218 GQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTL 277

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLC+ GR    + LFREM + G + +   Y  LI+ L   G+  +   LL ++V 
Sbjct: 278 SALVAGLCRDGRFSEAYALFREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVS 337

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   DL  Y +++  L +  + D+        + D+L+ +  T   L+    +   +D 
Sbjct: 338 RGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDE 397

Query: 362 FFKLLAQMEK-------LKFSVAAD-------LEKFFEFLVGKEERIM------------ 395
             ++L +ME+       + FS   +       L+K  E+    +ER +            
Sbjct: 398 AEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLID 457

Query: 396 ---------MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
                     AL+V+ ++  +G   +  I + L+  L + G++++A+ LF    G  L +
Sbjct: 458 GFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSL 517

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           + ++++  I    ++GD+  A +   ++++ + +P    YN     LC +G+   A  ++
Sbjct: 518 DHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSIL 577

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
            + + N+   P +  Y   I+  CR GE  K +++L+EM      PN +  + +++G+  
Sbjct: 578 TE-MRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFG 636

Query: 566 HGTLEEARKVFTNL 579
            G +E+A+ +   +
Sbjct: 637 TGAVEKAKYLLNEM 650



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/439 (22%), Positives = 187/439 (42%), Gaps = 39/439 (8%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + +  E    M+     P+V  Y  +I      +  DA L V+ +M  + VE +   
Sbjct: 427 RGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFI 486

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             +L+ GL + G++     LF++   +G+ +D   Y  LI+GL   G +  A    ++L+
Sbjct: 487 VDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELM 546

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D     D  +YN  I  LC + +F +A  +        L PD ST N ++V     G   
Sbjct: 547 DRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETA 606

Query: 361 NFFKLLAQM-------------------------EKLKFSVAADLEKFFEFLVGKEERIM 395
              KLL +M                         EK K+ +   +   F        R++
Sbjct: 607 KALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVL 666

Query: 396 MA----------LDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
            A          LD+ E +   G ++ + +YN L+  L   G  +KA  +  +M G  + 
Sbjct: 667 QACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIA 726

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI-DAAMM 503
            ++++F+  I  H +S  +  A   + +++  +  P++A +N L  GL  +G I +A  +
Sbjct: 727 PDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTV 786

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L+   +      P    Y + +    +     + + +  EM  +G  P     +A+IS  
Sbjct: 787 LIE--MEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDF 844

Query: 564 CKHGTLEEARKVFTNLRER 582
            K G + +A+++F ++++R
Sbjct: 845 TKAGMMTQAKELFKDMQKR 863



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 116/496 (23%), Positives = 197/496 (39%), Gaps = 58/496 (11%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           ++G   +  + N L   L RN      D    L D  G I  +              DV 
Sbjct: 128 KRGVPFDGVTVNTLLAGLCRNG---QVDAAAALADRGGGIHAL--------------DVI 170

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            +  +I       +  A L V + M    +  DV+ Y TL+ G C+ G+V     +   M
Sbjct: 171 GWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMM 230

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           KE G+  + A Y   I        V +A DL + +V +G   D+   ++++ GLCR  +F
Sbjct: 231 KEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRF 290

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
            +AY LF    +    P+  T   L+   A+ GR      LL +M  +   V  DL  + 
Sbjct: 291 SEAYALFREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEM--VSRGVVMDLVTYT 348

Query: 385 EFL--VGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGL 441
             +  +GK+ +     D          S   + Y +L+ AL +   V +A  +  +M   
Sbjct: 349 ALMDWLGKQGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEK 408

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
           ++  N ++FS  I   V+ G + +A E    + E    P+V  Y  L  G  K    DAA
Sbjct: 409 SISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAA 468

Query: 502 MMLVRDCL---------------------GNVASGPTEFKYA----LTILHV-------- 528
           + +  D L                     G +      FK A    L++ HV        
Sbjct: 469 LEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDG 528

Query: 529 -CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
             ++G+     +   E+      P+ V+ +  I+ +C  G  +EA+ + T +R   L  +
Sbjct: 529 LFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPD 588

Query: 588 ANTIVYDEILIEHMKK 603
            +T  Y+ +++ H +K
Sbjct: 589 QST--YNTMIVSHCRK 602



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 106/505 (20%), Positives = 201/505 (39%), Gaps = 49/505 (9%)

Query: 111 LSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRA 170
           + K R + P++V          TL   FF + G+    +     ++ L   +  N     
Sbjct: 439 MMKERGINPNVVTY-------GTLIDGFFKFQGQDAALE---VYHDMLCEGVEVNKFI-- 486

Query: 171 ADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK 230
            D +   +   G+I E + + +    +    D   YT +I  L    ++    +  +E+ 
Sbjct: 487 VDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELM 546

Query: 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
              +  D + Y   I  LC  G+      +  EM+  G+  D++ Y  +I     +G+  
Sbjct: 547 DRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETA 606

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           KA  LL ++  S  + +L  YN+++ GL      +KA  L    V    +P   T   +L
Sbjct: 607 KALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVL 666

Query: 351 VCCAEMGRMD------------------NFFKLLAQM---------------EKLKFSVA 377
             C++  R+D                    +  L Q+               E L   +A
Sbjct: 667 QACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIA 726

Query: 378 ADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL 434
            D   F   ++G  K   +  A   + ++  +  S ++  +N L+G L  +G + +A  +
Sbjct: 727 PDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTV 786

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
             +M    LE N+L++ I +  H +  + +EA   + +++    VP V+ YN L     K
Sbjct: 787 LIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTK 846

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
            G +  A  L +D +      PT   Y + +    R     ++ + L +M ++G  P++ 
Sbjct: 847 AGMMTQAKELFKD-MQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKG 905

Query: 555 ICSAIISGMCKHGTLEEARKVFTNL 579
             S I     K G   +A+++  NL
Sbjct: 906 TLSFICRAFSKPGMTWQAQRLLKNL 930



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 105/454 (23%), Positives = 190/454 (41%), Gaps = 55/454 (12%)

Query: 168 FRAAD--QVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV 225
           FR AD   +  L+ S  R+  +   +  +R +  +P   AY  ++  L+   +  A L  
Sbjct: 68  FRPADPASLNALLYSHCRLRLLRPAIALLRSS--RPTTVAYNILLAALSDHAHAPAVL-- 123

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI-LIDRAIYGVLIEGLV 284
             EM K  V  D +   TL+ GLC+ G+V     L    +  GI  +D   +  LI G  
Sbjct: 124 -AEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALAD--RGGGIHALDVIGWNTLIAGYC 180

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
             G    A  +   +   G   D+  YN+++ G CR  Q D A  + ++  +  + P+ +
Sbjct: 181 RVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVA 240

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFE 402
           T  P +V       ++  F L   M  ++  V  D+      + G  ++ R   A  +F 
Sbjct: 241 TYTPFIVYYCRTKGVEEAFDLYEGM--VRNGVLLDVVTLSALVAGLCRDGRFSEAYALFR 298

Query: 403 ELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKM--RGL---------------- 441
           E+   G  +VP    Y  L+ +L + G  K+ L L G+M  RG+                
Sbjct: 299 EMDKVG--AVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGK 356

Query: 442 -----------------NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
                            NL +N +++++ I    ++ ++ EA +   ++ E S  P+V  
Sbjct: 357 QGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVT 416

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           ++ +  G  K G +D A    R  +      P    Y   I    +    +  +EV ++M
Sbjct: 417 FSSVINGFVKRGLLDKATEYKR-MMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDM 475

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
             EG   N+ I  ++++G+ ++G +EEA  +F +
Sbjct: 476 LCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKD 509



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 4/119 (3%)

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           N L  GLC+ G++DAA  L     G          +   I   CR G+    + V + MT
Sbjct: 139 NTLLAGLCRNGQVDAAAALADR--GGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMT 196

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
            +G P + V  + +++G C+ G ++ AR V   ++E  +  + N   Y   ++ + + K
Sbjct: 197 AQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGV--DPNVATYTPFIVYYCRTK 253


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 154/379 (40%), Gaps = 35/379 (9%)

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           E M    C PD+F Y  +I  L  +  L +   +  EM+    E +V+ Y  LI   CK 
Sbjct: 3   ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKE 62

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           GR+     +  EM   G+ ++   Y  LI  L  + KV  A ++  D+   G + D+  +
Sbjct: 63  GRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTF 122

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           NS+I GLC+V +F++A  L++  + + +  +  T N L+      G M    KL+  M  
Sbjct: 123 NSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDML- 181

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKA 431
                                            +G     +  YN L+ AL   G ++K 
Sbjct: 182 --------------------------------FRGCPLDDIT-YNGLIKALCRAGNIEKG 208

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
           L LF  M    L  N++S +I I     +G+I  A E    +I     P +  YN L  G
Sbjct: 209 LALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLING 268

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
           LCK G    A+ L  D L      P    Y   I   C+ G  +    +L+     G  P
Sbjct: 269 LCKTGRAQEALNLF-DKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIP 327

Query: 552 NEVICSAIISGMCKHGTLE 570
           NEV    ++S   K G  E
Sbjct: 328 NEVTWYILVSNFIKEGDQE 346



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 152/342 (44%), Gaps = 37/342 (10%)

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D+  Y TLI+GLCK G +V   EL  EM+  G   +   Y +LI+    EG++ +A ++L
Sbjct: 13  DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 72

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            ++   G   +   YN +I  LC+ ++   A  +F         PD  T N L+      
Sbjct: 73  DEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLI------ 126

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-Y 415
                                        F + K  +   AL +++++  +G  +  I Y
Sbjct: 127 -----------------------------FGLCKVNKFEEALGLYQDMLLEGVIANTITY 157

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+ A L  G +++AL L   M      ++ ++++  I+    +G+I +       ++ 
Sbjct: 158 NTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMS 217

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P+  + N L  GLC+ G I  A+  +RD +    + P    Y   I  +C++G A+
Sbjct: 218 KGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLT-PDIVTYNSLINGLCKTGRAQ 276

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
           + + + +++  EG  P+ +  + +IS  CK G  ++A  + +
Sbjct: 277 EALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLS 318



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 144/312 (46%), Gaps = 4/312 (1%)

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
           + ++  G   D+  YN++I GLC+      A +L          P+  T   L+    + 
Sbjct: 3   ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKE 62

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIY 415
           GR++    +L +M     ++ A         + K+E++  AL++F ++  KG    +  +
Sbjct: 63  GRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTF 122

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+  L ++ + ++AL L+  M    +  N+++++  I   +  G + EA +  N ++ 
Sbjct: 123 NSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLF 182

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
                    YN L K LC+ G I+  + L  D +      P      + I  +CR+G  +
Sbjct: 183 RGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSK-GLNPNNISCNILINGLCRTGNIQ 241

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
             +E L +M   G  P+ V  +++I+G+CK G  +EA  +F  L+   +  +A  I Y+ 
Sbjct: 242 HALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDA--ITYNT 299

Query: 596 ILIEHMKKKTAD 607
           ++  H K+   D
Sbjct: 300 LISWHCKEGMFD 311



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 124/285 (43%), Gaps = 5/285 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E   +L++M       +   Y  +I  L  +  +   L ++ +M     + D+  
Sbjct: 62  EGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFT 121

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + +LI GLCK  +      L+++M   G++ +   Y  LI   +  G + +A  L+ D++
Sbjct: 122 FNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDML 181

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D   YN +I  LCR    +K   LFE  +   L P+  + N L+      G + 
Sbjct: 182 FRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQ 241

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNI 417
           +  + L  M  +   +  D+  +   + G  K  R   AL++F++L+ +G     I YN 
Sbjct: 242 HALEFLRDM--IHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNT 299

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
           L+    + G    A  L  +        N +++ I +   ++ GD
Sbjct: 300 LISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 344



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 104/258 (40%), Gaps = 51/258 (19%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           KG   N   YN L   L ++                 ++ + L +   M    CKPD+F 
Sbjct: 78  KGLALNAVGYNCLISALCKDE----------------KVQDALNMFGDMSSKGCKPDIFT 121

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG------------------ 247
           + ++I  L      +  L ++++M  + V A+ + Y TLI                    
Sbjct: 122 FNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDML 181

Query: 248 -----------------LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
                            LC+ G + +G  LF +M   G+  +     +LI GL   G + 
Sbjct: 182 FRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQ 241

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            A + L+D++  G   D+  YNS+I GLC+  +  +A  LF+    + + PD  T N L+
Sbjct: 242 HALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLI 301

Query: 351 VCCAEMGRMDNFFKLLAQ 368
               + G  D+   LL++
Sbjct: 302 SWHCKEGMFDDAHLLLSR 319



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 143/358 (39%), Gaps = 41/358 (11%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G +    E++ +M+   C+P+V  YT +I     E  L+    V +EM    +  + + 
Sbjct: 27  KGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVG 86

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI  LCK  +V     +F +M   G   D   +  LI GL    K  +A  L +D++
Sbjct: 87  YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 146

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G  A+   YN++I    R     +A KL    +      D  T N L+          
Sbjct: 147 LEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLI---------- 196

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIY-NILM 419
              K L +        A ++EK               L +FE++  KG +   I  NIL+
Sbjct: 197 ---KALCR--------AGNIEK--------------GLALFEDMMSKGLNPNNISCNILI 231

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L   G ++ AL     M    L  + ++++  I    ++G   EA    +K+      
Sbjct: 232 NGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGIC 291

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAE 535
           P    YN L    CK G  D A +L+      V SG  P E  + + + +  + G+ E
Sbjct: 292 PDAITYNTLISWHCKEGMFDDAHLLLSR---GVDSGFIPNEVTWYILVSNFIKEGDQE 346



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 8/118 (6%)

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
           +V  GP  F Y   IL +C+ G      E++NEM  +GC PN +  + +I   CK G LE
Sbjct: 7   SVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLE 66

Query: 571 EARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
           EAR V   +  + L    N + Y+ ++    K +    V   L  FG    + +KGCK
Sbjct: 67  EARNVLDEMSGKGL--ALNAVGYNCLISALCKDEK---VQDALNMFG---DMSSKGCK 116



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
           H  ++ +   P +  YN L  GLCK G + +A  L+ + +      P    Y + I   C
Sbjct: 2   HESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNE-MQIKGCEPNVITYTILIDRFC 60

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           + G  E+   VL+EM+ +G   N V  + +IS +CK   +++A  +F ++  +
Sbjct: 61  KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSK 113


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 194/427 (45%), Gaps = 22/427 (5%)

Query: 183 RIAEMLEI-LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA---DV 238
           R ++ ++I L +M    C P+VF+Y  +++ L  E      L +   M  D       DV
Sbjct: 137 RTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDV 196

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           ++Y T+I G  K G   + +  + EM + GIL D   Y  +I  L     + KA ++L  
Sbjct: 197 VSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNT 256

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +V +G   D   YNSI+ G C   Q  +A    +    D + PD  T + L+    + GR
Sbjct: 257 MVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGR 316

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA-----LDVFEELKGKGYSSVP 413
                K+   M K    +  ++  +   L G   +  +      LD+   ++   +    
Sbjct: 317 CMEARKIFDSMTKR--GLKPEITTYGTLLQGYATKGALVEMHGLLDLM--VRNGIHPDHY 372

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           +++IL+ A    G+V +A+ +F KMR   L  N++++   I    +SG + +A     ++
Sbjct: 373 VFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG- 532
           I+    P    YN L  GLC   + + A  L+ + L       T F  ++   H C+ G 
Sbjct: 433 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSH-CKEGR 491

Query: 533 --EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             E+EK+ E+   M + G  PN +  + +I+G C  G ++EA K+ + +    L  + NT
Sbjct: 492 VIESEKLFEL---MVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGL--KPNT 546

Query: 591 IVYDEIL 597
           + Y  ++
Sbjct: 547 VTYSTLI 553



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 200/468 (42%), Gaps = 46/468 (9%)

Query: 181 QGRIAEMLEILEKM---RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           + R  E LE+L  M   R     PDV +YT +I     E + D     + EM    +  D
Sbjct: 171 ENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPD 230

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ Y ++I  LCK   + +  E+   M +NG++ D   Y  ++ G    G+  +A   LK
Sbjct: 231 VVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLK 290

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST------------ 345
            +   G   D+  Y+ ++  LC+  +  +A K+F+   +  L P+ +T            
Sbjct: 291 KMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350

Query: 346 ----------------------VNPLLVCC-AEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
                                 V  +L+C  A  G++D    + ++M +   +  A    
Sbjct: 351 ALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYG 410

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGL 441
               ++ K  R+  A+  FE++  +G S   I YN L+  L    + ++A  L  +M   
Sbjct: 411 AVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDR 470

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            + +N++ F+  I  H + G ++E+ +    ++ +   P+V  YN L  G C  G++D A
Sbjct: 471 GICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEA 530

Query: 502 MMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           M L+    G V+ G  P    Y+  I   C+    E  + +  EM   G  P+ +  + I
Sbjct: 531 MKLLS---GMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNII 587

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           + G+ +      A++++  + E     E +T  Y+ IL    K K  D
Sbjct: 588 LQGLFQTRRTAAAKELYVRITESGTQIELST--YNIILHGLCKNKLTD 633



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 192/419 (45%), Gaps = 16/419 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + EM  +L+ M RN   PD + ++ +I   A +  +D  + V+ +M++  +  + +
Sbjct: 348 TKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAV 407

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I  LCK GRV      F +M + G+     +Y  LI GL    K  +A +L+ ++
Sbjct: 408 TYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM 467

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +D G   +   +NSII   C+  +  ++ KLFE+ V+  + P+  T N L+      G+M
Sbjct: 468 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKM 527

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           D   KLL+ M  +   +  +   +   + G  K  R+  AL +F+E++  G S  +  YN
Sbjct: 528 DEAMKLLSGM--VSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYN 585

Query: 417 ILMGALLEIGEVKKA--LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           I++  L +      A  LY+     G  +E+++ +  +   C  +  D  +A +    + 
Sbjct: 586 IILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTD--DALQMFQNLC 643

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRS 531
            M        +N +   L K+G  D A    +D     +S    P  + Y L   ++   
Sbjct: 644 LMDLKLEARTFNIMIDALLKVGRNDEA----KDLFVAFSSNGLVPNYWTYRLMAENIIGQ 699

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           G  E++ ++   M   GC  +  + + I+  + + G +  A    + + E+    EA+T
Sbjct: 700 GLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEAST 758



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 97/437 (22%), Positives = 190/437 (43%), Gaps = 43/437 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G+  E +  L+KMR +  +PDV  Y+ ++  L          ++++ M K  ++ ++ 
Sbjct: 278 SSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEIT 337

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TL+ G    G +V  H L   M  NGI  D  ++ +LI     +GKV +A  +   +
Sbjct: 338 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKM 397

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL---LVCCAEM 356
              G   +   Y ++IG LC+  + + A   FE  + + L+P     N L   L  C + 
Sbjct: 398 RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKW 457

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN 416
            R                                EE I+  LD     +G   +++  +N
Sbjct: 458 ER-------------------------------AEELILEMLD-----RGICLNTI-FFN 480

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++ +  + G V ++  LF  M  + ++ N ++++  I  +  +G + EA +  + ++ +
Sbjct: 481 SIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSV 540

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P+   Y+ L  G CKI  ++ A++L ++ + +    P    Y + +  + ++     
Sbjct: 541 GLKPNTVTYSTLINGYCKISRMEDALVLFKE-MESSGVSPDIITYNIILQGLFQTRRTAA 599

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT--IVYD 594
             E+   +T+ G        + I+ G+CK+   ++A ++F NL    L  EA T  I+ D
Sbjct: 600 AKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMID 659

Query: 595 EILIEHMKKKTADLVLS 611
            +L      +  DL ++
Sbjct: 660 ALLKVGRNDEAKDLFVA 676



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 126/262 (48%), Gaps = 12/262 (4%)

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERI 394
           D++ PD  T   L+ CC   GR+D  F  L  + K  F V  D   F   L G   ++R 
Sbjct: 81  DEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRV--DAIAFTPLLKGLCADKRT 138

Query: 395 MMALD-VFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM---RGLNLEVNSLS 449
             A+D V   +   G   +V  YNIL+  L +    ++AL L   M   RG     + +S
Sbjct: 139 SDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS 198

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           ++  I    + GD  +A   ++++++   +P V  YN +   LCK   +D AM ++   +
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV 258

Query: 510 GNVASGPTEFKYALTILH-VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
            N    P    Y  +ILH  C SG+ ++ I  L +M  +G  P+ V  S ++  +CK+G 
Sbjct: 259 KN-GVMPDCMTYN-SILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGR 316

Query: 569 LEEARKVFTNLRERKLLTEANT 590
             EARK+F ++ +R L  E  T
Sbjct: 317 CMEARKIFDSMTKRGLKPEITT 338



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 99/438 (22%), Positives = 174/438 (39%), Gaps = 54/438 (12%)

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHE-------------------------------- 259
           D V  D+  Y  LI   C+ GR+  G                                  
Sbjct: 81  DEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSD 140

Query: 260 ----LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD---SGYRADLGIYN 312
               + R M E G + +   Y +L++GL  E +  +A +LL  + D    G   D+  Y 
Sbjct: 141 AMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYT 200

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
           ++I G  +    DKAY  +   +   + PD  T N ++    +   MD   ++L  M  +
Sbjct: 201 TVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM--V 258

Query: 373 KFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVK 429
           K  V  D   +   L G     +   A+   ++++  G    V  Y++LM  L + G   
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318

Query: 430 KALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           +A  +F  M  RGL  E+   ++   +Q +   G ++E     + ++     P    ++ 
Sbjct: 319 EARKIFDSMTKRGLKPEIT--TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSI 376

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L       G++D A MLV   +      P    Y   I  +C+SG  E  +    +M  E
Sbjct: 377 LICAYANQGKVDQA-MLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDE 435

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           G  P  ++ +++I G+C     E A ++   + +R +    NTI ++ I+  H K+    
Sbjct: 436 GLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL--NTIFFNSIIDSHCKEGR-- 491

Query: 608 LVLSGLKFFGLESKLKAK 625
            V+   K F L  ++  K
Sbjct: 492 -VIESEKLFELMVRIGVK 508


>gi|302755288|ref|XP_002961068.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
 gi|300172007|gb|EFJ38607.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
          Length = 461

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 171/393 (43%), Gaps = 38/393 (9%)

Query: 182 GRIAEMLEILEKMRRNLC-KPDVFAYTAMIRVL-AAERNLDACLRVWEEMKKDLVEADVM 239
           G +   LE L + + +   +  V  Y+ ++  L AA+RN DA L + E+M+   +EAD  
Sbjct: 65  GNVDGALEFLREAKNSFSLRASVSTYSILVAALTAAKRNNDA-LELLEQMESVGLEADKD 123

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  +I  LCK G V +   L   M     + D  IY  +IE L   G+V +A ++ K+ 
Sbjct: 124 TYSLIIHSLCKSGMVDKAKVLVERMISRNCVPDARIYDPVIEELSKTGRVDEAVEIAKE- 182

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D+ +   +  YNS++ G  + ++  +  K+F    +   +PD  T N L    +  G  
Sbjct: 183 ADAKHCTSVVTYNSLVLGFLKARRLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRHGLW 242

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
              +KLL +M +    V  D                                V  +N L+
Sbjct: 243 RFAYKLLPRMNQ--DGVLPD--------------------------------VVTFNSLI 268

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L+E     +A+ L  +M     + N+++++I ++    +    E  E   ++++    
Sbjct: 269 NGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARTDECVELFQRLLDRKLA 328

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+V  YN +   LCK G +D A  L    L +  + P    Y   I  +C   E E+ + 
Sbjct: 329 PNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTPPNAITYRALIHGLCLKMELERAVL 388

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           +L+ M + GC P+      I++  CK G ++EA
Sbjct: 389 LLDAMAKRGCAPDVACYGTIVAAFCKQGRIDEA 421



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 154/373 (41%), Gaps = 37/373 (9%)

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
           A+ A+    + + NL A + + ++M ++     +      + GLCK G V    E  RE 
Sbjct: 18  AFPALAVKYSEQGNLRATIELLKDMAENGSTLSIQDLNGCLRGLCKAGNVDGALEFLREA 77

Query: 265 KEN-GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           K +  +    + Y +L+  L    +   A +LL+ +   G  AD   Y+ II  LC+   
Sbjct: 78  KNSFSLRASVSTYSILVAALTAAKRNNDALELLEQMESVGLEADKDTYSLIIHSLCKSGM 137

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            DKA  L E  +  +  PD    +P++   ++ GR+D                       
Sbjct: 138 VDKAKVLVERMISRNCVPDARIYDPVIEELSKTGRVDE---------------------- 175

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
                        A+++ +E   K  +SV  YN L+   L+   +K+ + +F +M     
Sbjct: 176 -------------AVEIAKEADAKHCTSVVTYNSLVLGFLKARRLKRGIKVFTRMARTGP 222

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             +  +++I  +     G    A +   ++ +   +P V  +N L  GL +      A+ 
Sbjct: 223 SPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDVVTFNSLINGLVEDNRYHRAVT 282

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L+++ +      P    Y + +  + R+   ++ +E+   +      PN    + ++S +
Sbjct: 283 LIQEMVSR-GCDPNAITYTILLKWLARNARTDECVELFQRLLDRKLAPNVYTYNTVMSAL 341

Query: 564 CKHGTLEEARKVF 576
           CK G L++A ++F
Sbjct: 342 CKAGRLDQAHRLF 354



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 36/223 (16%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+   +++  +M R    PD++ Y  +   L+         ++   M +D V  DV+ + 
Sbjct: 206 RLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDVVTFN 265

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +LI GL +  R  R   L +EM   G   +   Y +L++ L    +  +  +L + L+D 
Sbjct: 266 SLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARTDECVELFQRLLDR 325

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL----------------------- 339
               ++  YN+++  LC+  + D+A++LF V +  D                        
Sbjct: 326 KLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTPPNAITYRALIHGLCLKMELER 385

Query: 340 -------------APDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
                        APD +    ++    + GR+D  F+LL +M
Sbjct: 386 AVLLLDAMAKRGCAPDVACYGTIVAAFCKQGRIDEAFELLERM 428



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 86/198 (43%), Gaps = 23/198 (11%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
           Q G   +  ++N+L   L  +N +  A  + + M S+G                   R  
Sbjct: 254 QDGVLPDVVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARTD 313

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM-KKDLVEADVMAYVTL 244
           E +E+ +++      P+V+ Y  ++  L     LD   R++  M   D    + + Y  L
Sbjct: 314 ECVELFQRLLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTPPNAITYRAL 373

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLC    + R   L   M + G   D A YG ++     +G++ +A +LL+ +  +G 
Sbjct: 374 IHGLCLKMELERAVLLLDAMAKRGCAPDVACYGTIVAAFCKQGRIDEAFELLERMPFAG- 432

Query: 305 RADLGIYNSIIGGLCRVK 322
             D  ++ +++  LC+++
Sbjct: 433 --DKVMFRTLVRALCKLQ 448



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 68/151 (45%), Gaps = 2/151 (1%)

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
           + E G++    E    + E     S+   N   +GLCK G +D A+  +R+   + +   
Sbjct: 26  YSEQGNLRATIELLKDMAENGSTLSIQDLNGCLRGLCKAGNVDGALEFLREAKNSFSLRA 85

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           +   Y++ +  +  +      +E+L +M   G   ++   S II  +CK G +++A+ + 
Sbjct: 86  SVSTYSILVAALTAAKRNNDALELLEQMESVGLEADKDTYSLIIHSLCKSGMVDKAKVLV 145

Query: 577 TNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
             +  R  + +A   +YD ++ E  K    D
Sbjct: 146 ERMISRNCVPDAR--IYDPVIEELSKTGRVD 174


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 105/464 (22%), Positives = 198/464 (42%), Gaps = 33/464 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM-------------------DSQGRI 184
           +Q G   +  +YN+L     ++ L   A Q+ E M                   D  G+I
Sbjct: 309 EQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKI 368

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
              +    +M RN CKP++  Y A+I++          + V++E++      DV+ + TL
Sbjct: 369 DAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTL 428

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           +    + G       +F+EMK++G + +R  Y  LI      G   +A ++ K ++++G 
Sbjct: 429 LAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGI 488

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  YN+++  L R  ++++A KLF      D  PD  + + LL   A   ++D    
Sbjct: 489 HPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKS 548

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
           L   +   +      L K    +  K   +      F EL+ +  S  + + N ++    
Sbjct: 549 LSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDINVLNAMISIYG 608

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE-CHNKIIEMSQV--- 479
           + G VKK   +   M+  ++ +++ +++  +  +   GD    CE C N + E+      
Sbjct: 609 KNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGD----CEKCENILTEIKSSRAR 664

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYALTILHVCRSGEAEKI 537
           P   +YN +     + G++  A  L  +  C G V   P    Y + +     +   E+ 
Sbjct: 665 PDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLV---PDIVTYNIFVKSYVANSMFEEA 721

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           I+++  M   GC PNE   + I+   C HG + + +   +NL E
Sbjct: 722 IDLVRYMVTHGCKPNERTYNTILQEYCSHGRIADGKSFISNLPE 765



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 93/460 (20%), Positives = 179/460 (38%), Gaps = 57/460 (12%)

Query: 153 ASYNALAYCLSRNNLFRAADQVPELMDSQG----------------RIA----EMLEILE 192
           ++Y AL   LSR + FR A  V   M + G                +IA    E+L +++
Sbjct: 177 SAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLALVD 236

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
            MR++    D + Y  +I             +V++EM+    E D +   +L+    K  
Sbjct: 237 SMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKAR 296

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
           R      + +EM++ G       Y  LI   V +G + +A  L +++   G   D+  Y 
Sbjct: 297 RYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYT 356

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
           +++ GL R  + D A   +   +++   P+  T N L+      G               
Sbjct: 357 TLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRG--------------- 401

Query: 373 KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKA 431
                    KF E ++           VF+E++  G+   V  +N L+    + G   + 
Sbjct: 402 ---------KFPEMMI-----------VFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEV 441

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
             +F +M+         ++   I  +   G   +A E + ++IE    P ++ YN +   
Sbjct: 442 SGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSA 501

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
           L + G  + A  L  + + N+ S P E  Y+  +     + + +K+  +  ++  E    
Sbjct: 502 LARGGRWEQAEKLFAE-MENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIES 560

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           +  +   ++    K   L +  K F  LR R+   + N +
Sbjct: 561 HNGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDINVL 600



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 158/411 (38%), Gaps = 20/411 (4%)

Query: 211 RVLAAERNLDACLRVWEEMKKDLV---------EADVMAYVTLIMGLCKGGRVVRGHELF 261
           RVL   R L   +RV     +            + D  AY  LI  L +  R      +F
Sbjct: 140 RVLHHPRVLPTAIRVLARAGRLADASALLDAAPDPDASAYTALISALSRASRFRDAVAVF 199

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS----GYRADLGIYNSIIGG 317
           R M  NG+      Y V++       K+      +  LVDS    G   D   YN++I  
Sbjct: 200 RRMVANGVCPALVTYNVVLHVY---SKIAVPWKEVLALVDSMRKDGIPLDRYTYNTLISC 256

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
             R   + +A K+F+        PD  T+N LL    +  R D    +L +ME+     +
Sbjct: 257 CRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPS 316

Query: 378 ADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
                       K+  +  A  + EE++ KG    V  Y  L+  L   G++  A+  + 
Sbjct: 317 VVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYN 376

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M     + N  +++  I+ H   G   E     ++I     VP V  +N L     + G
Sbjct: 377 EMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNG 436

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            +D  +  V   +      P    Y   I    R G  ++ +E+   M + G  P+    
Sbjct: 437 -LDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTY 495

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           +A++S + + G  E+A K+F  +    L +  + + Y  +L  +   K  D
Sbjct: 496 NAVLSALARGGRWEQAEKLFAEM--ENLDSRPDELSYSSLLHAYANAKKLD 544



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 50/247 (20%), Positives = 92/247 (37%), Gaps = 13/247 (5%)

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYT 207
           Y     S+N L   L   N      +V  L D++    E+       RR  C  D+    
Sbjct: 554 YAERIESHNGLVKTLVLVN-----SKVNNLSDTEKAFLEL-------RRRRCSLDINVLN 601

Query: 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
           AMI +      +     +   MK+  +      Y +L+    + G   +   +  E+K +
Sbjct: 602 AMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSS 661

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
               DR  Y  +I     +G++ +A  L  ++  SG   D+  YN  +        F++A
Sbjct: 662 RARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEA 721

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA-DLEKFFEF 386
             L    V     P+  T N +L      GR+ +    ++ + +L   ++  + ++  E 
Sbjct: 722 IDLVRYMVTHGCKPNERTYNTILQEYCSHGRIADGKSFISNLPELHPGISKREQQRLLEL 781

Query: 387 LVGKEER 393
           L     R
Sbjct: 782 LAKHTSR 788


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 190/408 (46%), Gaps = 19/408 (4%)

Query: 183 RIAEMLEI-LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA--DVM 239
           R ++ ++I L +M +  C P+VF+Y  +++ L  E      L + + M  D  +   DV+
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVV 200

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y T+I G  K G + + +  + EM + GIL +   Y  +I  L     + KA ++L  +
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSM 260

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V +G   +   YNSI+ G C   Q  +A    +    D + PD  T N L+    + GR 
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA-----LDVFEELKGKGYSSVPI 414
               K+   M K    +  ++  +   L G   +  +      LD+   ++   + +  +
Sbjct: 321 TEARKMFDSMTKR--GLKPEITTYGTLLQGYATKGALVEMHGLLDLM--VRNGIHPNHYV 376

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           ++IL+ A  + G+V +A+ +F KMR   L  +++++   I    +SG + +A     ++I
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI 436

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG-- 532
           +    P    YN L   LC   + D A  L+ + L       T F  ++   H C+ G  
Sbjct: 437 DERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSH-CKEGRV 495

Query: 533 -EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            E+EK+ ++   M + G  PN +  S +I G C  G ++EA K+  ++
Sbjct: 496 IESEKLFDL---MVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASM 540



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 189/419 (45%), Gaps = 16/419 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + EM  +L+ M RN   P+ + ++ +I   A +  +D  + V+ +M++  +  D +
Sbjct: 351 TKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I  LCK GRV      F +M +  +     +Y  LI  L    K  KA +L+ ++
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +D G   D   +NSII   C+  +  ++ KLF++ V+  + P+  T + L+      G+M
Sbjct: 471 LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKM 530

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           D   KLLA M  +   +  D   +   + G  K  R+  AL +F E++  G S  +  YN
Sbjct: 531 DEATKLLASM--VSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588

Query: 417 ILMGALLEIGEVKKA--LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           I++  L +      A  LY+     G  LE+++ +  +   C     D  EA      + 
Sbjct: 589 IILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTD--EALRMFQNLC 646

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRS 531
                     +N +   L K+G  D A    +D    +++    P    Y+L   ++   
Sbjct: 647 LTDLQLETRTFNIMIGALLKVGRNDEA----KDLFAALSANGLVPDVRTYSLMAENLIEQ 702

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           G  E++ ++   M + GC  N  + ++I+  + + G +  A      + E+    EA+T
Sbjct: 703 GLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEAST 761



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 173/411 (42%), Gaps = 35/411 (8%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G+  E +  L+KM  +  +PDV  Y +++  L          ++++ M K  ++ ++ 
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEIT 340

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TL+ G    G +V  H L   M  NGI  +  ++ +LI     +GKV +A  +   +
Sbjct: 341 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM 400

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   D   Y ++IG LC+  + + A + FE  + + L+P     N L+       + 
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKW 460

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
           D   +L+ +M  L   +  D                                   +N ++
Sbjct: 461 DKAKELILEM--LDRGICLD--------------------------------TIFFNSII 486

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            +  + G V ++  LF  M  + ++ N +++S  I  +  +G + EA +    ++ +   
Sbjct: 487 DSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK 546

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P    YN L  G CKI  ++ A++L R+ + +    P    Y + +  + ++       E
Sbjct: 547 PDCVTYNTLINGYCKISRMEDALVLFRE-MESSGVSPDIITYNIILQGLFQTRRTAAAKE 605

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +   +T+ G        + I+ G+CK+   +EA ++F NL    L  E  T
Sbjct: 606 LYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 656



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/372 (20%), Positives = 163/372 (43%), Gaps = 11/372 (2%)

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
           D V  ++  Y  LI   C  GR+  G      + + G  +D   +  L++GL  + +   
Sbjct: 85  DEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSD 144

Query: 292 ACDL-LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD--DLAPDFSTVNP 348
           A D+ L+ +   G   ++  YN ++ GLC   +  +A +L ++   D  D  PD  +   
Sbjct: 145 AMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTT 204

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKG 406
           ++    + G +D  +    +M  L   +  ++  +   +    K + +  A++V   +  
Sbjct: 205 VINGFFKEGDLDKAYGTYHEM--LDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVK 262

Query: 407 KG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G   +   YN ++      G+ K+A+    KM    +E + ++++  +    ++G   E
Sbjct: 263 NGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTE 322

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A +  + + +    P +  Y  L +G    G +   M  + D +      P  + +++ I
Sbjct: 323 ARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL-VEMHGLLDLMVRNGIHPNHYVFSILI 381

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
               + G+ ++ + V ++M Q+G  P+ V    +I  +CK G +E+A + F  + + +L 
Sbjct: 382 CAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERL- 440

Query: 586 TEANTIVYDEIL 597
                IVY+ ++
Sbjct: 441 -SPGNIVYNSLI 451



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 4/126 (3%)

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           A+  L KGLC       AM +V   +  +   P  F Y + +  +C    +++ +E+L  
Sbjct: 128 AFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQM 187

Query: 544 MTQEG--CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
           M  +G  CPP+ V  + +I+G  K G L++A   +  + +R +L   N + Y+ I+    
Sbjct: 188 MPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL--PNVVTYNSIIAALC 245

Query: 602 KKKTAD 607
           K +  D
Sbjct: 246 KAQAMD 251


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 190/408 (46%), Gaps = 19/408 (4%)

Query: 183 RIAEMLEI-LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA--DVM 239
           R ++ ++I L +M +  C P+VF+Y  +++ L  E      L + + M  D  +   DV+
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVV 200

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y T+I G  K G + + +  + EM + GIL +   Y  +I  L     + KA ++L  +
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSM 260

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V +G   +   YNSI+ G C   Q  +A    +    D + PD  T N L+    + GR 
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA-----LDVFEELKGKGYSSVPI 414
               K+   M K    +  ++  +   L G   +  +      LD+   ++   + +  +
Sbjct: 321 TEARKMFDSMTKR--GLKPEITTYGTLLQGYATKGALVEMHGLLDLM--VRNGIHPNHYV 376

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           ++IL+ A  + G+V +A+ +F KMR   L  +++++   I    +SG + +A     ++I
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI 436

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG-- 532
           +    P    YN L   LC   + D A  L+ + L       T F  ++   H C+ G  
Sbjct: 437 DERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSH-CKEGRV 495

Query: 533 -EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            E+EK+ ++   M + G  P+ +  S +I G C  G ++EA K+  ++
Sbjct: 496 IESEKLFDL---MVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASM 540



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 189/419 (45%), Gaps = 16/419 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + EM  +L+ M RN   P+ + ++ +I   A +  +D  + V+ +M++  +  D +
Sbjct: 351 TKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I  LCK GRV      F +M +  +     +Y  LI  L    K  KA +L+ ++
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +D G   D   +NSII   C+  +  ++ KLF++ V+  + PD  T + L+      G+M
Sbjct: 471 LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 530

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           D   KLLA M  +   +  D   +   + G  K  R+  AL +F E++  G S  +  YN
Sbjct: 531 DEATKLLASM--VSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588

Query: 417 ILMGALLEIGEVKKA--LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           I++  L +      A  LY+     G  LE+++ +  +   C     D  EA      + 
Sbjct: 589 IILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTD--EALRMFQNLC 646

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRS 531
                     +N +   L K+G  D A    +D    +++    P    Y+L   ++   
Sbjct: 647 LTDLQLETRTFNIMIGALLKVGRNDEA----KDLFAALSANGLVPDVRTYSLMAENLIEQ 702

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           G  E++ ++   M + GC  N  + ++I+  + + G +  A      + E+    EA+T
Sbjct: 703 GLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEAST 761



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 176/411 (42%), Gaps = 35/411 (8%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G+  E +  L+KM  +  +PDV  Y +++  L          ++++ M K  ++ ++ 
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEIT 340

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TL+ G    G +V  H L   M  NGI  +  ++ +LI     +GKV +A  +   +
Sbjct: 341 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM 400

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   D   Y ++IG LC+  + + A + FE  + + L+P     N L+       + 
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKW 460

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
           D   +L+ +M          L++             + LD               +N ++
Sbjct: 461 DKAKELILEM----------LDRG------------ICLDTI------------FFNSII 486

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            +  + G V ++  LF  M  + ++ + +++S  I  +  +G + EA +    ++ +   
Sbjct: 487 DSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK 546

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P    YN L  G CKI  ++ A++L R+ + +    P    Y + +  + ++       E
Sbjct: 547 PDCVTYNTLINGYCKISRMEDALVLFRE-MESSGVSPDIITYNIILQGLFQTRRTAAAKE 605

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +   +T+ G        + I+ G+CK+   +EA ++F NL    L  E  T
Sbjct: 606 LYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 656



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 75/372 (20%), Positives = 163/372 (43%), Gaps = 11/372 (2%)

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
           D V  ++  Y  LI   C  GR+  G      + + G  +D   +  L++GL  + +   
Sbjct: 85  DEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSD 144

Query: 292 ACDL-LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD--DLAPDFSTVNP 348
           A D+ L+ +   G   ++  YN ++ GLC   +  +A +L ++   D  D  PD  +   
Sbjct: 145 AMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTT 204

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKG 406
           ++    + G +D  +    +M  L   +  ++  +   +    K + +  A++V   +  
Sbjct: 205 VINGFFKEGDLDKAYGTYHEM--LDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVK 262

Query: 407 KG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G   +   YN ++      G+ K+A+    KM    +E + ++++  +    ++G   E
Sbjct: 263 NGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTE 322

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A +  + + +    P +  Y  L +G    G +   M  + D +      P  + +++ I
Sbjct: 323 ARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL-VEMHGLLDLMVRNGIHPNHYVFSILI 381

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
               + G+ ++ + V ++M Q+G  P+ V    +I  +CK G +E+A + F  + + +L 
Sbjct: 382 CAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERL- 440

Query: 586 TEANTIVYDEIL 597
                IVY+ ++
Sbjct: 441 -SPGNIVYNSLI 451



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 4/126 (3%)

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           A+  L KGLC       AM +V   +  +   P  F Y + +  +C    +++ +E+L  
Sbjct: 128 AFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQM 187

Query: 544 MTQEG--CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
           M  +G  CPP+ V  + +I+G  K G L++A   +  + +R +L   N + Y  I+    
Sbjct: 188 MPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL--PNVVTYSSIIAALC 245

Query: 602 KKKTAD 607
           K +  D
Sbjct: 246 KAQAMD 251


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 97/427 (22%), Positives = 193/427 (45%), Gaps = 23/427 (5%)

Query: 183 RIAEMLEILEKMRR--NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           R  E L+++++M +    C PDV ++  +I     +  +     ++ EM +  V  DV  
Sbjct: 210 RSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGT 269

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +++  LCK   + +   + R+M + G+  D   Y  +I G    G   ++  + + + 
Sbjct: 270 YNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMT 329

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR-- 358
             G   D   ++S +  LC+  +   A ++F+        PD  + + LL   A  GR  
Sbjct: 330 SKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFA 389

Query: 359 -MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPI 414
            M+N F  +A        + ++       +    +R MM  A+ VF E++G+G   +V  
Sbjct: 390 DMNNLFHSMADK-----GIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVT 444

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y+ L+ A   +G +  A+  F +M  + +E N+  +   I      GD+++A E  ++++
Sbjct: 445 YSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMM 504

Query: 475 EMS-QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG---NVASGPTEFKYALTILHVCR 530
                 P++  ++ +   LC    I+  +M  +D      ++   PT   +   I   C 
Sbjct: 505 SKGLHRPNIVFFSSIIHSLC----IEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCL 560

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            G+ EK   VL+ M   G  P+ V  + ++SG CK G +++   +F  +  +K+  +  T
Sbjct: 561 VGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKV--KPTT 618

Query: 591 IVYDEIL 597
           + Y+ +L
Sbjct: 619 VTYNIVL 625



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 104/462 (22%), Positives = 193/462 (41%), Gaps = 53/462 (11%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++GR A+M  +   M       +      +I   A    +D  + V+ EM+   V  +V+
Sbjct: 384 TEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVV 443

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TLI   C+ GR+    E F +M   GI  + A+Y  LI G    G + KA + + ++
Sbjct: 444 TYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEM 503

Query: 300 VDSG-YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +  G +R ++  ++SII  LC   +   A  +F + +     P   T N L+     +G+
Sbjct: 504 MSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGK 563

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL 418
           M+  F +L  M                  VG E  ++                    N L
Sbjct: 564 MEKAFGVLDAMVS----------------VGIEPDVV------------------TNNTL 589

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G++   L LF +M    ++  +++++I +   + +G    A +  +++I+   
Sbjct: 590 VSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGT 649

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG-----E 533
              +  Y  L KGLC+    D A+ L          G  + K+ +TIL+   +       
Sbjct: 650 AVDIDTYKILLKGLCRNDLTDEAITLFHKL------GAMDCKFDITILNTMINALYKVRR 703

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
            E+  ++   ++  G  PN      +I  + K G++EEA  +F+++ E+     ++ ++ 
Sbjct: 704 REEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSM-EKSGCAPSSRLLN 762

Query: 594 DEILIEHMKKKTADLVLSGL---KFFGLESKLKAKGCKLLSS 632
           D   I  M  +  D+V +G    K  G    L+A    LL S
Sbjct: 763 D---IIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMS 801



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 145/332 (43%), Gaps = 25/332 (7%)

Query: 147 GYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDS-------------------QGRIA 185
           G + N A Y++L   +C+   +L +A + + E+M                     +GR+ 
Sbjct: 472 GIEPNTAVYHSLIHGFCM-HGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVM 530

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           +  ++   +     +P +  + ++I        ++    V + M    +E DV+   TL+
Sbjct: 531 DAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLV 590

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G CK G++  G  LFREM    +      Y ++++GL+  G+   A  +  +++DSG  
Sbjct: 591 SGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTA 650

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  Y  ++ GLCR    D+A  LF      D   D + +N ++    ++ R +    L
Sbjct: 651 VDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDL 710

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
            A +                  + KE  +  A  +F  ++  G + S  + N ++  LL+
Sbjct: 711 FAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQ 770

Query: 425 IGEVKKALYLFGKMRG--LNLEVNSLSFSIAI 454
            G++ KA Y   K+ G  ++LE ++ S  +++
Sbjct: 771 KGDIVKAGYYMSKVDGTIISLEASTTSLLMSL 802


>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 189/400 (47%), Gaps = 9/400 (2%)

Query: 190 ILEKMR-RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           +L +M+ + LC P    YT++I     + N++  +R  +EM  D +  +V+A  +LI G 
Sbjct: 289 LLREMKEKKLCVPSQETYTSVILASVKQGNMEDAIRWKDEMVSDGISMNVVAATSLITGH 348

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           CK   +    +LF +M+  G   +   + VLIE     G++ KA +  K +   G    +
Sbjct: 349 CKNNDLGSALDLFYKMENEGPSPNSVTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSV 408

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
              ++II G  + ++ ++A KLF+ + +  LA  F   N +L    + G++D   +LL +
Sbjct: 409 FHVHTIIQGWLKGQKHEEALKLFDESFETGLANVF-ICNTILSWLCKQGKIDKATELLRK 467

Query: 369 MEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
           ME     +  ++  +   ++   +++ + +A  VF  +  KG   +   Y+IL+    + 
Sbjct: 468 MESR--GIGPNVVSYNNVMLAHCRKKNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFKN 525

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PSVAA 484
            + +  L +  +M   N+EVN + +   I    + G   +A E    +IE  +   S  +
Sbjct: 526 HDEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRFCVSCMS 585

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN +  G  K GE+D A+    +   N  S P    Y   +  +C++   ++ +E+ +EM
Sbjct: 586 YNSIIDGFIKEGEMDYAVAAYEEMCANGIS-PNVITYTSLMDGLCKNNRMDQALEMRDEM 644

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
             +G   +     A+I G CK   +E A  +F+ L E  L
Sbjct: 645 KNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEEGL 684



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 182/414 (43%), Gaps = 42/414 (10%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG+I +  E+L KM      P+V +Y  ++     ++N+D    V+  M +  ++ +   
Sbjct: 455 QGKIDKATELLRKMESRGIGPNVVSYNNVMLAHCRKKNMDLARTVFSNMLEKGLKPNNYT 514

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G  K        E+  +M  + I ++  +Y  +I GL   G+  KA +LL +++
Sbjct: 515 YSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMI 574

Query: 301 DSG-YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +   +      YNSII G  +  + D A   +E    + ++P+  T   L+    +  RM
Sbjct: 575 EEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSLMDGLCKNNRM 634

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           D   ++  +M+     V  D+  +   + G  K+  +  A  +F EL  +G + S P+YN
Sbjct: 635 DQALEMRDEMKNK--GVKLDIPAYGALIHGFCKKSNMESASALFSELLEEGLNPSQPVYN 692

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+     +G +  AL L+ KM    L  +  +++  I   ++ G+++ A + + ++  +
Sbjct: 693 SLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKEGNLILASDLYTEMQAV 752

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
             VP    Y  +  GL K                                     G+  K
Sbjct: 753 GLVPDEIMYTVIVNGLSK------------------------------------KGQFVK 776

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           ++++  EM +    PN +I +A+I+G  + G L+EA ++   + ++ +L +  T
Sbjct: 777 VVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGAT 830



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 144/321 (44%), Gaps = 45/321 (14%)

Query: 182 GRIAEMLEILEKM--RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           G+ ++  E+L  M   +  C     +Y ++I     E  +D  +  +EEM  + +  +V+
Sbjct: 561 GQTSKARELLANMIEEKRFC-VSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVI 619

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y +L+ GLCK  R+ +  E+  EMK  G+ +D   YG LI G   +  +  A  L  +L
Sbjct: 620 TYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSEL 679

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           ++ G      +YNS+I G   +     A  L++  ++D L  D  T   L+         
Sbjct: 680 LEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLI--------- 730

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYN 416
           D                             KE  +++A D++ E++  G   VP   +Y 
Sbjct: 731 DGLL--------------------------KEGNLILASDLYTEMQAVGL--VPDEIMYT 762

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           +++  L + G+  K + +F +M+  N+  N L ++  I  H   G++ EA   H+++++ 
Sbjct: 763 VIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDK 822

Query: 477 SQVPSVAAYNCLTKGLCKIGE 497
             +P  A ++ L  G  K+G+
Sbjct: 823 GILPDGATFDILVSG--KVGK 841



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 178/438 (40%), Gaps = 48/438 (10%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +  I E  E+  +M       D      ++R    E      L V+    +   E D + 
Sbjct: 210 RNSITEAKELYSRMVAIGVDGDNGTTQLLMRASLREEKPAEALEVFSRAIERGAEPDSLL 269

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILI-DRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           Y   +   CK   +   + L REMKE  + +  +  Y  +I   V +G +  A     ++
Sbjct: 270 YSLAVQACCKTLNLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMEDAIRWKDEM 329

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V  G   ++    S+I G C+      A  LF     +  +P+  T + L+   ++ G M
Sbjct: 330 VSDGISMNVVAATSLITGHCKNNDLGSALDLFYKMENEGPSPNSVTFSVLIERFSKNGEM 389

Query: 360 DNFFKLLAQMEKLK-----FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI 414
           +   +   +ME L      F V   ++ +      K ++   AL +F+E    G ++V I
Sbjct: 390 EKALEFYKKMESLGLTPSVFHVHTIIQGWL-----KGQKHEEALKLFDESFETGLANVFI 444

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
            N ++  L + G++ KA  L  KM    +  N +S++  +  H           C  K +
Sbjct: 445 CNTILSWLCKQGKIDKATELLRKMESRGIGPNVVSYNNVMLAH-----------CRKKNM 493

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           ++++       N L KGL                       P  + Y++ I    ++ + 
Sbjct: 494 DLAR---TVFSNMLEKGL----------------------KPNNYTYSILIDGCFKNHDE 528

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           + ++EV+N+MT      N V+   II+G+CK G   +AR++  N+ E K     + + Y+
Sbjct: 529 QNVLEVVNQMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRFC-VSCMSYN 587

Query: 595 EILIEHMKKKTADLVLSG 612
            I+   +K+   D  ++ 
Sbjct: 588 SIIDGFIKEGEMDYAVAA 605



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 107/223 (47%), Gaps = 16/223 (7%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G   N  +Y +L   L +NN                R+ + LE+ ++M+    K D+ AY
Sbjct: 613 GISPNVITYTSLMDGLCKNN----------------RMDQALEMRDEMKNKGVKLDIPAY 656

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
            A+I     + N+++   ++ E+ ++ +      Y +LI G    G +V   +L+++M +
Sbjct: 657 GALIHGFCKKSNMESASALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLK 716

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           +G+  D   Y  LI+GL+ EG +  A DL  ++   G   D  +Y  I+ GL +  QF K
Sbjct: 717 DGLRCDLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVK 776

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
             K+FE   ++++ P+    N ++      G +D  F+L  +M
Sbjct: 777 VVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEM 819



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 94/194 (48%), Gaps = 21/194 (10%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMD-----SQ-------------GR 183
           K KG K +  +Y AL   +C  ++N+  A+    EL++     SQ             G 
Sbjct: 645 KNKGVKLDIPAYGALIHGFC-KKSNMESASALFSELLEEGLNPSQPVYNSLISGFRNLGN 703

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           +   L++ +KM ++  + D+  YT +I  L  E NL     ++ EM+   +  D + Y  
Sbjct: 704 MVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLVPDEIMYTV 763

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           ++ GL K G+ V+  ++F EMK+N +  +  IY  +I G   EG + +A  L  +++D G
Sbjct: 764 IVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKG 823

Query: 304 YRADLGIYNSIIGG 317
              D   ++ ++ G
Sbjct: 824 ILPDGATFDILVSG 837



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 7/226 (3%)

Query: 382 KFFEFLV---GKEERIMMALDVFEELKGKGYSS-VPIYNILMGALLEIGEVKKALYLFGK 437
           + F +L+    K+ +   A+D+  ++   G    VP  N  + AL++   + +A  L+ +
Sbjct: 163 RAFNYLLNAYSKDRQTDYAVDIVNQMLELGVIPFVPYVNRTLSALVQRNSITEAKELYSR 222

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M  + ++ ++ +  + ++  +      EA E  ++ IE    P    Y+   +  CK   
Sbjct: 223 MVAIGVDGDNGTTQLLMRASLREEKPAEALEVFSRAIERGAEPDSLLYSLAVQACCKTLN 282

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           +  A  L+R+        P++  Y   IL   + G  E  I   +EM  +G   N V  +
Sbjct: 283 LAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMEDAIRWKDEMVSDGISMNVVAAT 342

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           ++I+G CK+  L  A  +F  +         N++ +  +LIE   K
Sbjct: 343 SLITGHCKNNDLGSALDLFYKMENEG--PSPNSVTF-SVLIERFSK 385



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD   YT ++  L+ +      ++++EEMKK+ V  +V+ Y  +I G  + G +     L
Sbjct: 756 PDEIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRL 815

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
             EM + GIL D A + +L+ G VG+ +  +A  L
Sbjct: 816 HDEMLDKGILPDGATFDILVSGKVGKFQPIRAASL 850


>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
          Length = 665

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 195/462 (42%), Gaps = 35/462 (7%)

Query: 157 ALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE 216
           A  +CL+    F  +  +  L  S  RI  + E+L  M +  C PD +A    +  L   
Sbjct: 223 AKGFCLTP---FTYSRWITALCQSN-RIELVEELLTDMDKFGCFPDFWACNIYVHYLCGH 278

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
             L   L++ E+M       DV+ Y T++  LC   R      L+ EM   G+  D    
Sbjct: 279 NRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVAC 338

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
           G LI GL    KV +A +L   ++    + ++ IYN++I G  R    +KAYK      +
Sbjct: 339 GALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQR 398

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME-------KLKFSV-------AADLEK 382
           +   PD  T N LL     +G  D    L+ +ME       +  +++       A  L+K
Sbjct: 399 NGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDK 458

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            F F             V + ++  G+  +   NIL+ A     +V  AL LF +M    
Sbjct: 459 AFAF-------------VSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKG 505

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           ++ +++++ I I      G    A E  ++++    VP+V  YN +   LCK+G    A 
Sbjct: 506 IQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQ 565

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            +         S P    +   I  + +S  A + +++  EM  +G  P+ +    IISG
Sbjct: 566 KIFWQMTQKEVS-PDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISG 624

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           +   G    A +++  + E  ++ + +     E LI  +K K
Sbjct: 625 LLDEGKATLAYEIWEYMMENGIILDRDV---SERLISVLKLK 663



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 113/523 (21%), Positives = 202/523 (38%), Gaps = 71/523 (13%)

Query: 102 QWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAY 160
           +W   V  EL  L   + P +V +VL+   +  +A +F+ WA  + G+ HN     A+AY
Sbjct: 74  RWSESVELELEGLHVELDPFVVNKVLRGLLDSGMAVRFYWWAESRPGFYHNNF---AIAY 130

Query: 161 CLSRNNLFRAADQVPELMDSQGRIAE-------------------------MLEILEKMR 195
            +S   L    D    L +  GR+                           ++E  ++M 
Sbjct: 131 IIS---LLFVDDNFALLSEFLGRVRSQGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMV 187

Query: 196 RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVV 255
            + C+     Y   I V+      D   + +              Y   I  LC+  R+ 
Sbjct: 188 TSGCREFGVDYNRFIGVMIKNCCFDLVEKYYNMALAKGFCLTPFTYSRWITALCQSNRIE 247

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
              EL  +M + G   D     + +  L G  ++  A  +++ +   G   D+  Y +++
Sbjct: 248 LVEELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVV 307

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
             LC  ++F +A  L+E  V+  L PD      L+    +  ++D  F+L ++M  L   
Sbjct: 308 SCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQ 367

Query: 376 VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLF 435
           +                                  +V IYN L+      G ++KA    
Sbjct: 368 L----------------------------------NVSIYNALISGFWRAGSIEKAYKTV 393

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PSVAAYNCLTKGLCK 494
             M+    E + ++++I +  H  S  + +  E   + +EMS V P   +YN L KGLCK
Sbjct: 394 SFMQRNGCEPDVVTYNILLN-HYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCK 452

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
             ++D A   V D +  V          + I   CR+ +    + +  EM  +G   + V
Sbjct: 453 AHQLDKAFAFVSDHM-EVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAV 511

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
               +I+G+   G    A ++F  +   K++   N  VY+ +L
Sbjct: 512 TYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVN--VYNIML 552



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 26/164 (15%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRA--ADQVPELMDS--QGRIAEMLEILEKMRRNLC 199
           K+ GYK   A  +A+ Y +  N LF    ++   EL D     +I   + +   M  NLC
Sbjct: 499 KEMGYKGIQA--DAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLC 556

Query: 200 K--------------------PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           K                    PD   +  +I  L         L +++EM+   VE D +
Sbjct: 557 KVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNL 616

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
            +  +I GL   G+    +E++  M ENGI++DR +   LI  L
Sbjct: 617 TFRYIISGLLDEGKATLAYEIWEYMMENGIILDRDVSERLISVL 660


>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
          Length = 665

 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 195/462 (42%), Gaps = 35/462 (7%)

Query: 157 ALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE 216
           A  +CL+    F  +  +  L  S  RI  + E+L  M +  C PD +A    +  L   
Sbjct: 223 AKGFCLTP---FTYSRWITALCQSN-RIELVEELLTDMDKFGCFPDFWACNIYVHYLCGH 278

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
             L   L++ E+M       DV+ Y T++  LC   R      L+ EM   G+  D    
Sbjct: 279 NRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVAC 338

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
           G LI GL    KV +A +L   ++    + ++ IYN++I G  R    +KAYK      +
Sbjct: 339 GALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQR 398

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME-------KLKFSV-------AADLEK 382
           +   PD  T N LL     +G  D    L+ +ME       +  +++       A  L+K
Sbjct: 399 NGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDK 458

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            F F             V + ++  G+  +   NIL+ A     +V  AL LF +M    
Sbjct: 459 AFAF-------------VSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKG 505

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           ++ +++++ I I      G    A E  ++++    VP+V  YN +   LCK+G    A 
Sbjct: 506 IQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQ 565

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            +         S P    +   I  + +S  A + +++  EM  +G  P+ +    IISG
Sbjct: 566 KIFWQMTQKEVS-PDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISG 624

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           +   G    A +++  + E  ++ + +     E LI  +K K
Sbjct: 625 LLDEGKATLAYEIWEYMMENGIILDRDV---SERLISVLKLK 663



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 113/523 (21%), Positives = 204/523 (39%), Gaps = 71/523 (13%)

Query: 102 QWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAY 160
           +W   V  EL  L   + P +V +VL+  ++  +A +F+ WA  + G+ HN     A+AY
Sbjct: 74  RWSESVELELEGLHVELDPFVVNKVLRGLSDSGMAVRFYWWAESRPGFYHNNF---AIAY 130

Query: 161 CLSRNNLFRAADQVPELMDSQGRIAE-------------------------MLEILEKMR 195
            +S   L    D    L++  GR+                           ++E  ++M 
Sbjct: 131 IIS---LLFVDDNFALLLEFLGRVRSQGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMV 187

Query: 196 RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVV 255
            + C+     Y   I V+      D   + +              Y   I  LC+  R+ 
Sbjct: 188 TSGCREFGVDYNRFIGVMIKNCCFDLVEKYYNMALAKGFCLTPFTYSRWITALCQSNRIE 247

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
              EL  +M + G   D     + +  L G  ++  A  +++ +   G   D+  Y +++
Sbjct: 248 LVEELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVV 307

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
             LC  ++F +A  L+E  V+  L PD      L+    +  ++D  F+L ++M  L   
Sbjct: 308 SCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQ 367

Query: 376 VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLF 435
           +                                  +V IYN L+      G ++KA    
Sbjct: 368 L----------------------------------NVSIYNALISGFWRAGSIEKAYKTV 393

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PSVAAYNCLTKGLCK 494
             M+    E + ++++I +  H  S  + +  E   + +EMS V P   +YN L KGLCK
Sbjct: 394 SFMQRNGCEPDVVTYNILLN-HYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCK 452

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
             ++D A   V D +  V          + I   CR+ +    + +  EM  +G   + V
Sbjct: 453 AHQLDKAFAFVSDHM-EVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAV 511

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
               +I+G+   G    A ++F  +   K++   N  VY+ +L
Sbjct: 512 TYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVN--VYNIML 552



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 26/164 (15%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRA--ADQVPELMDS--QGRIAEMLEILEKMRRNLC 199
           K+ GYK   A  +A+ Y +  N LF    ++   EL D     +I   + +   M  NLC
Sbjct: 499 KEMGYKGIQA--DAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLC 556

Query: 200 K--------------------PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           K                    PD   +  +I  L         L +++EM+   VE D +
Sbjct: 557 KVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNL 616

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
            +  +I GL   G+    +E++  M ENGI++DR +   LI  L
Sbjct: 617 TFRYIISGLLDEGKATLAYEIWEYMMENGIILDRDVSERLISVL 660


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 179/412 (43%), Gaps = 7/412 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+A +L     M ++   P+   Y  +I        L         M++  +  D   Y 
Sbjct: 70  RLAHLLASFGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYN 129

Query: 243 TLIMGLCKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            L++GLC+ G +     LF +M +  G   DR  Y +LI+GL   G++  AC +   +  
Sbjct: 130 CLMLGLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSR 189

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              R  +  Y  ++ GLC+V++  +A  L    V   + P+  T N L+    + GR D+
Sbjct: 190 GWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDD 249

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
             KLL +ME  + S   D   + + + G  K  ++     V  E  GKG +  V  YN L
Sbjct: 250 VTKLLEKMEIQRHS--PDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNAL 307

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    + G++K AL +   M+   +     +F+  I      G + +A     ++     
Sbjct: 308 INGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGL 367

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P+   +N L  G C +GE   A+ L+ D +      P    YA+ I  +C  G+ E+  
Sbjct: 368 SPNTVTFNSLISGQCSVGERKIALRLL-DLMEEYGVLPDRQTYAIFIDALCDEGQLEEAH 426

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            + + +  +G   + VI ++++ G C+ G ++ A  +   +     + + +T
Sbjct: 427 SLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHT 478



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 170/382 (44%), Gaps = 16/382 (4%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           + GRI +   +  KM R  C+P V  YT ++  L   R +     +  EM    V  +V+
Sbjct: 173 AAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVV 232

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI GLC+ GR     +L  +M+      D   Y  ++ GL   GKVG    +L + 
Sbjct: 233 TYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEA 292

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMG 357
           +  G   ++  YN++I G C+      A  + ++  ++ + P   T N ++   CC   G
Sbjct: 293 IGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCG--G 350

Query: 358 RMDNFFKLLAQMEKLKFS---VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP- 413
           ++      L QM     S   V  +     +  VG+ +  +  LD+ EE     Y  +P 
Sbjct: 351 KVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEE-----YGVLPD 405

Query: 414 --IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
              Y I + AL + G++++A  LF  +    ++ +++ ++  +  + + GDI  A     
Sbjct: 406 RQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLME 465

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           K+   + +P V  YN L  GLCK+  +D A+ L+ D +      PT   + + I  +   
Sbjct: 466 KMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLL-DKMKKQGIEPTTCTFNILIKQMLWD 524

Query: 532 GEAEKIIEVLNEMTQEGCPPNE 553
            +     ++  +M   GC P++
Sbjct: 525 KKHADAAKMYEQMISSGCKPDK 546



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 186/443 (41%), Gaps = 29/443 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G   +  +YN L   L R  L  AA          G   +M       RR     D 
Sbjct: 117 REAGLAPDTFTYNCLMLGLCRAGLLAAA---------CGLFVQM------PRRWGACYDR 161

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           ++YT +I+ L A   +D   RV+ +M +      V  Y  L+ GLCK  RV     L  E
Sbjct: 162 YSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGE 221

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M   G++ +   Y  LI GL  EG+      LL+ +    +  D   Y  ++ GLC+  +
Sbjct: 222 MVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGK 281

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
                K+    +   +A +  T N L+    + G M     +L  M++ +  V   ++ F
Sbjct: 282 VGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNR--VNPGVQTF 339

Query: 384 FEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
            E + G     ++  A+    ++ G G S +   +N L+     +GE K AL L   M  
Sbjct: 340 NEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEE 399

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC----LTKGLCKIG 496
             +  +  +++I I    + G + EA    + +     +  + A+N     L  G C++G
Sbjct: 400 YGVLPDRQTYAIFIDALCDEGQLEEA----HSLFSCLPMKGIKAHNVIYTSLVHGYCQVG 455

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           +ID+A  L+   + +    P    Y   I  +C+    ++ I++L++M ++G  P     
Sbjct: 456 DIDSAFGLMEK-MASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTF 514

Query: 557 SAIISGMCKHGTLEEARKVFTNL 579
           + +I  M       +A K++  +
Sbjct: 515 NILIKQMLWDKKHADAAKMYEQM 537



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 91/438 (20%), Positives = 175/438 (39%), Gaps = 62/438 (14%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +   L++L+ M+RN   P V  +  +I        +   +    +M    +  + + +
Sbjct: 315 GDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTF 374

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI G C  G       L   M+E G+L DR  Y + I+ L  EG++ +A  L   L  
Sbjct: 375 NSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPM 434

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G +A   IY S++ G C+V   D A+ L E    ++  PD  T N L+    ++ R+D 
Sbjct: 435 KGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDR 494

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
                                              A+D+ +++K +G   +   +NIL+ 
Sbjct: 495 -----------------------------------AIDLLDKMKKQGIEPTTCTFNILIK 519

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV- 479
            +L   +   A  ++ +M     + +  ++++ I      G   E       ++EM +  
Sbjct: 520 QMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEE-NIDMAVVEMHEAG 578

Query: 480 --PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE-- 535
             P V  YN + K     G  + A       L +V   P    Y++ + ++C   +++  
Sbjct: 579 VFPDVETYNAIIKAYVDAGLKEKAFFAHVKML-SVPIDPDCTTYSILLNYMCNKDDSDAF 637

Query: 536 ------KIIEVLN------EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
                 K+++V N      +M +    P      A++ G+C    LEE   +   +    
Sbjct: 638 DNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQCRLEEVEWLLLKM---- 693

Query: 584 LLTEANTIVYDEILIEHM 601
              + N+I+ DE + +++
Sbjct: 694 ---QGNSILLDEDMSDYL 708



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 154/367 (41%), Gaps = 30/367 (8%)

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           YT+++       ++D+   + E+M  +    DV  Y TLI GLCK  R+ R  +L  +MK
Sbjct: 444 YTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMK 503

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD-----LGIYNSIIGGLCR 320
           + GI      + +LI+ ++ + K   A  + + ++ SG + D     L I      G  +
Sbjct: 504 KQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATK 563

Query: 321 VKQFDKAY-KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
            +  D A  ++ E  V     PD  T N ++    + G  +  F   A ++ L   +  D
Sbjct: 564 EENIDMAVVEMHEAGV----FPDVETYNAIIKAYVDAGLKEKAF--FAHVKMLSVPIDPD 617

Query: 380 LEKF---FEFLVGKE-------ERIMMALDV------FEEL-KGKGYSSVPIYNILMGAL 422
              +     ++  K+       E+I   +DV      FE++ +      +  Y  L+  L
Sbjct: 618 CTTYSILLNYMCNKDDSDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGL 677

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
                +++  +L  KM+G ++ ++       + C+       EACE    +   S  P +
Sbjct: 678 CNQCRLEEVEWLLLKMQGNSILLDEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQPGL 737

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
            +   L  GLC  G+   A+ +  D LG +     E  + L I  +   G A   +E+L+
Sbjct: 738 KSCCLLLSGLCDSGDHGMAVSIFSDMLG-LGYNYDEVVWKLLIDCLHEKGHAGACLEMLS 796

Query: 543 EMTQEGC 549
            M  + C
Sbjct: 797 VMDAKKC 803



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 126/335 (37%), Gaps = 58/335 (17%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I     ++EKM    C PDV  Y  +I  L   + LD  + + ++MKK  +E     +
Sbjct: 455 GDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTF 514

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI-----EGLVGEGKVGKAC--- 293
             LI  +    +     +++ +M  +G   D+  Y + I     EG   E  +  A    
Sbjct: 515 NILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAVVEM 574

Query: 294 -------------DLLKDLVDSGYRA----------------DLGIYNSIIGGLCRVKQF 324
                         ++K  VD+G +                 D   Y+ ++  +C     
Sbjct: 575 HEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCNKDDS 634

Query: 325 D-----KAYK---------LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           D     K +K         LFE   + D AP  ST   LL       R++    LL +M+
Sbjct: 635 DAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQCRLEEVEWLLLKMQ 694

Query: 371 KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS----VPIYNILMGALLEIG 426
                +  D+    ++L+G    + M  +  E+ +   + S    +    +L+  L + G
Sbjct: 695 GNSILLDEDMS---DYLLGCYCNLEMYREACEQFRSMAHQSFQPGLKSCCLLLSGLCDSG 751

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           +   A+ +F  M GL    + + + + I C  E G
Sbjct: 752 DHGMAVSIFSDMLGLGYNYDEVVWKLLIDCLHEKG 786


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 174/383 (45%), Gaps = 12/383 (3%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +P+    T +++ L     +   +   + +    +  D + Y TLI GLCK GR +   +
Sbjct: 151 QPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQ 210

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L +EM+   +  +  IY ++I+    +    KA DL   +VD G   D+  Y S+I G C
Sbjct: 211 LLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFC 270

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM---DNFFKLLAQMEKLKFSV 376
           R  Q+ +  +L    V  ++ P+  T N L+      G+M      F L+ +  +     
Sbjct: 271 RTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQ----- 325

Query: 377 AADLEKFFEFLVGK--EERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALY 433
             D+  F   + G      ++ A  +F+ +  +G    V  Y IL+    +   + +A+ 
Sbjct: 326 QPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVS 385

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           LF +MR  N+ ++ + +S  I    +SG I  A E  + I      P+V  YN L    C
Sbjct: 386 LFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFC 445

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           KI +ID  + L +   G   + PT   Y + I   C+S    + + +L+ M  +   P+ 
Sbjct: 446 KIQDIDMGIELFKLMCGKGLT-PTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDS 504

Query: 554 VICSAIISGMCKHGTLEEARKVF 576
           +  +++  G+CK G + +A ++F
Sbjct: 505 ITYNSLFDGLCKSGRISDAWELF 527



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 152/328 (46%), Gaps = 5/328 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR  +  ++L++M   + KP++  Y  +I     +        ++ ++    ++ D++ Y
Sbjct: 203 GRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTY 262

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI G C+ G+     +L  EM    I  +   + VLI+    +GK+ +A  +   +V 
Sbjct: 263 TSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVK 322

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + D+  +N++I G C      +A KLF+   +  + PD  +   L++   +  R+D 
Sbjct: 323 RGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDE 382

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
              L  +M + K ++  D+  +   + G  K  RI  A ++F  +   G   +V  YNIL
Sbjct: 383 AVSLFNEM-RCK-NMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNIL 440

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + A  +I ++   + LF  M G  L    L+++I I  + +S  I EA    + +   + 
Sbjct: 441 IDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNL 500

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
            P    YN L  GLCK G I  A  L +
Sbjct: 501 APDSITYNSLFDGLCKSGRISDAWELFK 528



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 143/319 (44%), Gaps = 38/319 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  E+ +++ +M      P+V+ +  +I     +  +     ++  M K   + D++ +
Sbjct: 273 GQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTF 332

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G C  G V+   +LF  + E GIL D   Y +LI G     ++ +A  L  ++  
Sbjct: 333 NTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRC 392

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                D+ +Y+S+I GLC+  +   A++LF     D   P+  T N L+         D 
Sbjct: 393 KNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILI---------DA 443

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
           F K+                          + I M +++F+ + GKG + +V  YNIL+ 
Sbjct: 444 FCKI--------------------------QDIDMGIELFKLMCGKGLTPTVLTYNILIN 477

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              +   +++A+ L   M+  NL  +S++++       +SG I +A E   K++ +   P
Sbjct: 478 GYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELF-KVMHVGGPP 536

Query: 481 -SVAAYNCLTKGLCKIGEI 498
             VA YN L    CK  ++
Sbjct: 537 VDVATYNVLLDAFCKAQDV 555



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 138/303 (45%), Gaps = 6/303 (1%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           +N+IIG + ++K    A  L +  V   + P   T++  + C   +G M   F +L  + 
Sbjct: 87  FNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVL 146

Query: 371 KLKFSVA-ADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEV 428
           K  +      L    + L    E +  A+D  + +  +G     + Y  L+  L +IG  
Sbjct: 147 KRGYQPNNITLTTVMKGLCINGE-VQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRS 205

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
             A  L  +M G  ++ N + +++ I    +     +A + + KI++M   P +  Y  L
Sbjct: 206 IDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSL 265

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
            +G C+ G+      L+ + + N    P  + + + I   CR G+  +   + N M + G
Sbjct: 266 IRGFCRTGQWGEVKQLMCE-MVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRG 324

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADL 608
             P+ V  + +ISG C HG + EARK+F  + ER +L +  +  Y  ++I + K K  D 
Sbjct: 325 QQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWS--YTILIIGYCKCKRIDE 382

Query: 609 VLS 611
            +S
Sbjct: 383 AVS 385



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 89/190 (46%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G + E  ++ + +      PDV++YT +I      + +D  + ++ EM+   +  D++ 
Sbjct: 342 HGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVL 401

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI GLCK GR+    ELF  +  +G   +   Y +LI+       +    +L K + 
Sbjct: 402 YSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMC 461

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G    +  YN +I G C+ K+  +A  L  V    +LAPD  T N L     + GR+ 
Sbjct: 462 GKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRIS 521

Query: 361 NFFKLLAQME 370
           + ++L   M 
Sbjct: 522 DAWELFKVMH 531



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 121/258 (46%), Gaps = 8/258 (3%)

Query: 177 LMDSQGRIAEMLE---ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L+D+  R  +M+E   +   M +   +PD+  +  +I       N+    ++++ + +  
Sbjct: 300 LIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERG 359

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  DV +Y  LI+G CK  R+     LF EM+   +++D  +Y  LI+GL   G++  A 
Sbjct: 360 ILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAW 419

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           +L   + + G   ++  YN +I   C+++  D   +LF++     L P   T N L+   
Sbjct: 420 ELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGY 479

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELK-GKGYS 410
            +  R+     LL+ M+    ++A D   +     G  K  RI  A ++F+ +  G    
Sbjct: 480 CKSKRIREAMNLLSVMQSK--NLAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGGPPV 537

Query: 411 SVPIYNILMGALLEIGEV 428
            V  YN+L+ A  +  +V
Sbjct: 538 DVATYNVLLDAFCKAQDV 555



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 82/409 (20%), Positives = 168/409 (41%), Gaps = 7/409 (1%)

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
           ++L++   +D  + ++  +        V+ + T+I  + K         L ++M   G+ 
Sbjct: 57  KILSSFNGIDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVT 116

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
                  + I      G++G A  +L  ++  GY+ +     +++ GLC   +  KA   
Sbjct: 117 PSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDF 176

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK 390
            +      +  D      L+    ++GR  + F+LL +ME         +         K
Sbjct: 177 HDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCK 236

Query: 391 EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
           +E    A D++ ++   G    +  Y  L+      G+  +   L  +M   N+  N  +
Sbjct: 237 DELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYT 296

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           F++ I      G ++EA    N +++  Q P +  +N L  G C  G +  A  L  D +
Sbjct: 297 FNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLF-DTV 355

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
                 P  + Y + I+  C+    ++ + + NEM  +    + V+ S++I G+CK G +
Sbjct: 356 FERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRI 415

Query: 570 EEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGL 618
             A ++F+ +         N I Y+ ++    K +  D+   G++ F L
Sbjct: 416 SYAWELFSTINNDG--PPPNVITYNILIDAFCKIQDIDM---GIELFKL 459


>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
          Length = 927

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 105/472 (22%), Positives = 191/472 (40%), Gaps = 76/472 (16%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G +       E MR    +P    YT++I   A  R+++  L    +MK++ +E  ++ 
Sbjct: 281 RGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVT 340

Query: 241 YVTLIMGL-----------------------------------CKGGRVVRGHELFREMK 265
           Y  L+ G                                    C+   + +   L REM+
Sbjct: 341 YSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACNMTQAEALVREME 400

Query: 266 ENGI-------------------------LIDR----------AIYGVLIEGLVGEGKVG 290
           E GI                         + DR            YG LI   +  GKV 
Sbjct: 401 EEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVS 460

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           KA ++ K +  +G + ++  Y+ +I G  R+K +  A+ +FE  V+D L PD    N ++
Sbjct: 461 KALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNII 520

Query: 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG 408
                MG MD   + + +M+K +         F   + G  +   +  AL++F+ ++  G
Sbjct: 521 RAFCGMGNMDRAIRTVKEMQKERHRPTT--RTFMPIIHGFARSGDMRRALEIFDMMRWSG 578

Query: 409 -YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
              +V  +N L+  L+E  +++KA+ +  +M    +  N  +++  +  +   GD  +A 
Sbjct: 579 CIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAF 638

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
           E   K+        V  Y  L K  CK G + +A+ + R+         T F Y + I  
Sbjct: 639 EYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNT-FVYNILIDG 697

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             R G+  +  E++ +M QEG  P+    ++ I+  CK G ++ A K    +
Sbjct: 698 WARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEM 749



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 146/347 (42%), Gaps = 17/347 (4%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G KHN  +Y+ L      N   R  D            A    + E + ++  KPDV  Y
Sbjct: 473 GIKHNMKTYSMLI-----NGFVRLKDW-----------ANAFAVFEDVVKDGLKPDVVLY 516

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +IR      N+D  +R  +EM+K+        ++ +I G  + G + R  E+F  M+ 
Sbjct: 517 NNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRW 576

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           +G +     +  LI GLV + ++ KA ++L ++  +G   +   Y +I+ G   +    K
Sbjct: 577 SGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGK 636

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A++ F     + L  D  T   LL  C + GRM +   +  +M   K      +      
Sbjct: 637 AFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILID 696

Query: 387 LVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
              +   +  A ++ +++K +G    +  Y   + A  + G++++A     +M  + ++ 
Sbjct: 697 GWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKP 756

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
           N  +++  I     +    +A +C  ++      P  A Y+CL   L
Sbjct: 757 NIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSL 803



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/391 (20%), Positives = 159/391 (40%), Gaps = 37/391 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++++ LE+ + M     K ++  Y+ +I      ++      V+E++ KD ++ DV+ Y
Sbjct: 457 GKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLY 516

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I   C  G + R     +EM++         +  +I G    G + +A ++   +  
Sbjct: 517 NNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRW 576

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           SG    +  +N++I GL    Q +KA ++ +      ++P+  T   ++   A +G    
Sbjct: 577 SGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLG---- 632

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
                            D  K FE+              F +LK +G    V  Y  L+ 
Sbjct: 633 -----------------DTGKAFEY--------------FTKLKTEGLELDVYTYEALLK 661

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           A  + G ++ AL +  +M    +  N+  ++I I      GD+ EA E   ++ +    P
Sbjct: 662 ACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQP 721

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            +  Y       CK G++  A   +++ +  V   P    Y   I    R+   EK ++ 
Sbjct: 722 DIHTYTSFINACCKAGDMQRATKTIQE-MEVVGVKPNIKTYTTLIHGWARASLPEKALKC 780

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
             EM   G  P++ +   +++ +    ++ E
Sbjct: 781 FQEMKSAGLKPDKAVYHCLMTSLLSRASVAE 811



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 94/431 (21%), Positives = 170/431 (39%), Gaps = 45/431 (10%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           KP    +  M+   A   ++      +E M+   +E     Y +LI     G  +     
Sbjct: 265 KPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALS 324

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
             R+MKE GI +    Y +L+ G         A    K+  +     +  IY +II   C
Sbjct: 325 CVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHC 384

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +     +A  L     ++ +       + +         MD +                 
Sbjct: 385 QACNMTQAEALVREMEEEGIDAPIDIYHTM---------MDGY----------------- 418

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
                  ++G EE+ ++   VF+ LK  G++ SV  Y  L+   ++IG+V KAL +   M
Sbjct: 419 ------TIIGNEEKCLI---VFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMM 469

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
               ++ N  ++S+ I   V   D   A      +++    P V  YN + +  C +G +
Sbjct: 470 EVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNM 529

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D A+  V++ +      PT   +   I    RSG+  + +E+ + M   GC P     +A
Sbjct: 530 DRAIRTVKE-MQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNA 588

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGL 618
           +I G+ +   +E+A ++   +    +    N   Y  I+  +     A L  +G K F  
Sbjct: 589 LILGLVEKCQMEKAVEILDEMSLAGI--SPNEHTYTTIMHGY-----ASLGDTG-KAFEY 640

Query: 619 ESKLKAKGCKL 629
            +KLK +G +L
Sbjct: 641 FTKLKTEGLEL 651



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/268 (19%), Positives = 112/268 (41%), Gaps = 37/268 (13%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-------------------GRI 184
           K +G + +  +Y AL     ++   ++A  V   M SQ                   G +
Sbjct: 645 KTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDV 704

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  E++++M++   +PD+  YT+ I       ++    +  +EM+   V+ ++  Y TL
Sbjct: 705 WEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTL 764

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK------ACDLLKD 298
           I G  +     +  + F+EMK  G+  D+A+Y  L+  L+    V +         + ++
Sbjct: 765 IHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSLLSRASVAEEYIYSGVVGICRE 824

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +++     D+G   ++    C +++ ++        +Q    PD+++ N  +    E+  
Sbjct: 825 MIECELTVDMG--TAVHWSKC-LRKIERTGGELTEALQKTFPPDWNSYNIHVNSDDELDV 881

Query: 359 MD---------NFFKLLAQMEKLKFSVA 377
            D         N +K+     K  F+VA
Sbjct: 882 DDAYSGGFLSPNLYKVSMSNNKENFNVA 909


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 168/375 (44%), Gaps = 13/375 (3%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           RI + L +   M  + CK D+ AY  +I VL  +  L        EM  + +  +V+ Y 
Sbjct: 403 RIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYT 462

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           ++I G CK G V    E+F+ M+  G   +   YG LI GL+ + K+ KA  L+  + + 
Sbjct: 463 SIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQED 522

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G    +  Y ++I G C+  +FD A++LFE+  ++ L PD    N L     + GR +  
Sbjct: 523 GITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEA 582

Query: 363 FKLLAQ----MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNI 417
           +  L +    + K+ ++   D          K      A  + E++  +G  + +  Y++
Sbjct: 583 YSFLVRKGVVLTKVTYTSLVD-------GFSKAGNTDFAAVLIEKMVNEGCKADLYTYSV 635

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ AL +  ++ +AL +  +M    ++ N ++++I I   ++ G    A    N++I   
Sbjct: 636 LLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSG 695

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             PS   Y       CKIG+I+ A  L+ + +      P    Y + I      G  ++ 
Sbjct: 696 HKPSATTYTVFISSYCKIGQIEEAEHLIGE-MERDGVTPDVVTYHIFINGCGHMGYMDRA 754

Query: 538 IEVLNEMTQEGCPPN 552
              L  M    C PN
Sbjct: 755 FSTLKRMVDASCEPN 769



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 168/401 (41%), Gaps = 23/401 (5%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +   LE+ + M    C P+ + Y ++I  L  ++ L   + +  +M++D +   V+AY
Sbjct: 472 GMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAY 531

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G CK         LF  M++NG+  D   Y VL + L   G+  +A   L   V 
Sbjct: 532 TTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAYSFL---VR 588

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G       Y S++ G  +    D A  L E  V +    D  T + LL    +  +++ 
Sbjct: 589 KGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNE 648

Query: 362 FFKLLAQM--EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
              +L QM    +K ++ A      E +  KE +   A  +F E+   G+  S   Y + 
Sbjct: 649 ALSILDQMTVSGVKCNIVAYTIIISEMI--KEGKHDHAKSLFNEMISSGHKPSATTYTVF 706

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + +  +IG++++A +L G+M    +  + +++ I I      G +  A     ++++ S 
Sbjct: 707 ISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASC 766

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV---------------ASGPTEFKYAL 523
            P+   Y  L K   K+  I+A  +        +                  PT   Y+ 
Sbjct: 767 EPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLLERMMKHGLNPTVVTYSS 826

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
            I   C++   E+   +L+ M  +   PNE I + +I   C
Sbjct: 827 IIAGFCKATRLEEACVLLDHMLGKAISPNEEIYTMLIKCCC 867



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 126/509 (24%), Positives = 211/509 (41%), Gaps = 84/509 (16%)

Query: 105 PQVVTELSKL------------RRVTPDL----VAEVLKVEN---NPTLASKFFHWAGKQ 145
           P +V EL ++            +R++P +    VA++ +      +P  A  FF W  ++
Sbjct: 20  PDIVAELGRVLSTRRWNKGSAYKRLSPSVTAAHVADLFRAPVSPLDPATALAFFEWVARR 79

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQ-VPELMDSQGR---IAEMLEILEKMRRNLCKP 201
            G++H  AS+ AL   L+R       D+ V  ++   G    + E ++ ++ +RR   K 
Sbjct: 80  PGFRHTAASHAALLQLLARRRAPANYDKLVLSMISCSGTAEDVREAVDAIQAIRRVGGKR 139

Query: 202 DVFA---YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
            V +   Y   +R L      +   +++  + ++ +  D + Y T+IM  CK G +   H
Sbjct: 140 LVLSPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAH 199

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
             F  ++E+G+ +D      L+ G      + KAC LL  +   G R +   Y  +I GL
Sbjct: 200 RYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGL 259

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
              +   +A  L  + VQD  + +                  + + LL +          
Sbjct: 260 YEARCVREALVLVFMMVQDGCSLNL-----------------HMYTLLIKG--------- 293

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGK 437
                    + KE RI  A  + +E+  +G   SV  YN ++    + G +K AL +   
Sbjct: 294 ---------LCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKAL 344

Query: 438 M--RGLN---LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
           M   G N      NSL + +        G + EA E  N  I     P+V  +  L  G 
Sbjct: 345 MEQNGCNPDDWTYNSLIYGLC------GGKLDEAEELLNGAIARGFTPTVITFTNLINGY 398

Query: 493 CKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           CK   ID A+     M+  +C  ++ +          ++  CR  EA+   E LNEM   
Sbjct: 399 CKAERIDDALRVKSNMISSNCKLDLQAYGVLIN---VLIKKCRLKEAK---ETLNEMFAN 452

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVF 576
           G  PN VI ++II G CK G +  A +VF
Sbjct: 453 GLAPNVVIYTSIIDGYCKVGMVGAALEVF 481



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 105/444 (23%), Positives = 181/444 (40%), Gaps = 41/444 (9%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C+ + ++YT +I+ L   R +   L +   M +D    ++  Y  LI GLCK GR+    
Sbjct: 245 CRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHDAR 304

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L  EM   G++     Y  +I+G    G++  A  +   +  +G   D   YNS+I GL
Sbjct: 305 GLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGL 364

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C  K  D+A +L    +     P   T   L+    +  R+D+  ++ + M  +  +   
Sbjct: 365 CGGK-LDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNM--ISSNCKL 421

Query: 379 DLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
           DL+ +   +  + K+ R+  A +   E+   G + +V IY  ++    ++G V  AL +F
Sbjct: 422 DLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVF 481

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             M       N+ ++   I   ++   + +A     K+ E    P V AY  L +G CK 
Sbjct: 482 KLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKK 541

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL-------------- 541
            E D A  L      N  + P E  Y +    +C+SG AE+    L              
Sbjct: 542 HEFDNAFRLFEMMEKNGLT-PDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTS 600

Query: 542 ------------------NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
                              +M  EGC  +    S ++  +CK   L EA  +   +    
Sbjct: 601 LVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSG 660

Query: 584 LLTEANTIVYDEILIEHMKKKTAD 607
           +  + N + Y  I+ E +K+   D
Sbjct: 661 V--KCNIVAYTIIISEMIKEGKHD 682



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 175/399 (43%), Gaps = 10/399 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GR+ + L I   M +N C PD + Y ++I  L   + LD    +            V+ 
Sbjct: 332 SGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCGGK-LDEAEELLNGAIARGFTPTVIT 390

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  LI G CK  R+     +   M  +   +D   YGVLI  L+ + ++ +A + L ++ 
Sbjct: 391 FTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMF 450

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +G   ++ IY SII G C+V     A ++F++   +   P+  T   L+    +  ++ 
Sbjct: 451 ANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLH 510

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
               L+ +M++    +   +  +   + G  K+     A  +FE ++  G +     YN+
Sbjct: 511 KAMALITKMQE--DGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNV 568

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L  AL + G  ++A Y F   +G+ L    ++++  +    ++G+   A     K++   
Sbjct: 569 LTDALCKSGRAEEA-YSFLVRKGVVL--TKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEG 625

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
               +  Y+ L + LCK  +++ A+ ++ D +           Y + I  + + G+ +  
Sbjct: 626 CKADLYTYSVLLQALCKQKKLNEALSIL-DQMTVSGVKCNIVAYTIIISEMIKEGKHDHA 684

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
             + NEM   G  P+    +  IS  CK G +EEA  + 
Sbjct: 685 KSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLI 723



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 122/326 (37%), Gaps = 56/326 (17%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q ++ E L IL++M  +  K ++ AYT +I  +  E   D    ++ EM     +     
Sbjct: 643 QKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATT 702

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y   I   CK G++     L  EM+ +G+  D   Y + I G    G + +A   LK +V
Sbjct: 703 YTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMV 762

Query: 301 DS---------------------------------------------------GYRADLG 309
           D+                                                   G    + 
Sbjct: 763 DASCEPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLLERMMKHGLNPTVV 822

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            Y+SII G C+  + ++A  L +  +   ++P+      L+ CC ++         +  M
Sbjct: 823 TYSSIIAGFCKATRLEEACVLLDHMLGKAISPNEEIYTMLIKCCCDIKLFGKDVSFVTDM 882

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIG 426
             ++F     LE +   +VG   E     A  +F +L G  Y+   + + IL   LL+ G
Sbjct: 883 --IEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILNDGLLKAG 940

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSI 452
            V     L   M   +  ++S S+S+
Sbjct: 941 HVDFCSQLLAAMDNRHCRIDSESYSM 966


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 103/481 (21%), Positives = 208/481 (43%), Gaps = 82/481 (17%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWE------------- 227
           +GRIA+ L +L++M    C P    Y  +I          + LRV E             
Sbjct: 129 RGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGN 188

Query: 228 ------------------EMKKDL----VEADVMAYVTLIMGLCKGGR----------VV 255
                             EM + L     EAD+++Y  ++ GLC   R          +V
Sbjct: 189 CNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMV 248

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
           + HE   +M ++G   D  +Y  +I+G+  EG    A ++L  +   G + ++  YN+++
Sbjct: 249 KVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVL 308

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            G+C   +++KA +L     Q +   D  T N L+    + G +D   +LL QM      
Sbjct: 309 KGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQM------ 362

Query: 376 VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLF 435
                                       L+      V  Y  ++    + G + +A+ L 
Sbjct: 363 ----------------------------LEHGCMPDVITYTTVINGFCKEGLIDEAVMLL 394

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             M     + N++S++I ++    +   ++A E  +++I+   +P+   +N +   LCK 
Sbjct: 395 KNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKK 454

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G ++ A+ L++  L N    P    Y+  I  + ++G+ E+ +E+LN M  +G  PN + 
Sbjct: 455 GLVEQAIELLKQMLVN-GCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVIT 513

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKF 615
            S++   + + G +++  ++F N+++  + ++A  ++Y+ ++    K++  DL +  L +
Sbjct: 514 YSSMAFALAREGRIDKVIQMFDNIQDATIRSDA--VLYNAVISSLCKRRETDLAIDFLAY 571

Query: 616 F 616
            
Sbjct: 572 M 572



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 183/416 (43%), Gaps = 16/416 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA-------ERNLDACLRVWE---EMK 230
           QG + E LE+L K+    C+ D+ +Y A+++ L A       E  +D  ++V E   +M 
Sbjct: 199 QGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMA 258

Query: 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
           +     D+  Y T+I G+CK G     +E+   M   G+  +   Y  +++G+    +  
Sbjct: 259 QHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWE 318

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           KA +LL ++       D   +N ++   C+    D+  +L E  ++    PD  T   ++
Sbjct: 319 KAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVI 378

Query: 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG 408
               + G +D    LL  M         +   +   L G    ER + A ++   +  +G
Sbjct: 379 NGFCKEGLIDEAVMLLKNMPSC--GCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQG 436

Query: 409 YSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
               P+ +N ++  L + G V++A+ L  +M       + +S+S  I    ++G   EA 
Sbjct: 437 CLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEAL 496

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
           E  N +I     P+V  Y+ +   L + G ID  + +  D + +         Y   I  
Sbjct: 497 ELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMF-DNIQDATIRSDAVLYNAVISS 555

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
           +C+  E +  I+ L  M   GC PNE   +A+I G+   G L EA+ + + L  R+
Sbjct: 556 LCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLASEGLLCEAQDLLSELCSRR 611



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 161/382 (42%), Gaps = 31/382 (8%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+ + Y  ++R L     +   L V +EM           Y  +I   C+ G       +
Sbjct: 114 PNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRV 173

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              +   G  +D     ++I  +  +G V +  ++L+ L   G  AD+  YN+++ GLC 
Sbjct: 174 LEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCA 233

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            K++    +L                         M  M    + L+QM   +     D+
Sbjct: 234 AKRWGDVEEL-------------------------MDEMVKVHEALSQMA--QHGCTPDI 266

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             +   + G  KE    +A ++   +   G   +V  YN ++  +      +KA  L  +
Sbjct: 267 RMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTE 326

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M   N  ++ ++F+I +    ++G +    E   +++E   +P V  Y  +  G CK G 
Sbjct: 327 MYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGL 386

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           ID A+ML+++ + +    P    Y + +  +C +       E+++ M Q+GC PN V  +
Sbjct: 387 IDEAVMLLKN-MPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFN 445

Query: 558 AIISGMCKHGTLEEARKVFTNL 579
            II+ +CK G +E+A ++   +
Sbjct: 446 TIINFLCKKGLVEQAIELLKQM 467



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 89/190 (46%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S  R  +  E++ +M +  C P+   +  +I  L  +  ++  + + ++M  +    D++
Sbjct: 418 STERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLI 477

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y T+I GL K G+     EL   M   GI  +   Y  +   L  EG++ K   +  ++
Sbjct: 478 SYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNI 537

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            D+  R+D  +YN++I  LC+ ++ D A       V +   P+ ST   L+   A  G +
Sbjct: 538 QDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLASEGLL 597

Query: 360 DNFFKLLAQM 369
                LL+++
Sbjct: 598 CEAQDLLSEL 607



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 148/356 (41%), Gaps = 56/356 (15%)

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
           G+  D ++ L  +G  A +  YN+++ G CRV Q + A +L        + P+  T  P+
Sbjct: 66  GRTADAVRALDAAGNAAGVVDYNAMVAGYCRVGQVEAARRLAAAV---PVPPNAYTYFPV 122

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER---IMMALDVFEELKG 406
           +      GR+ +   +L +M          +   +  ++    R      AL V E L  
Sbjct: 123 VRGLCGRGRIADALAVLDEMTSRS---CVPIPPMYHVIIESACRSGGYSSALRVLEALHA 179

Query: 407 KGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVES-GD 462
           KG +      N+++ A+ + G V + L +  K+     E + +S++  ++  C  +  GD
Sbjct: 180 KGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGD 239

Query: 463 IL----EACECHNKIIEMSQ---VPSVAAYNCLTKGLCKIGEIDAAMMLVRD-------- 507
           +     E  + H  + +M+Q    P +  Y  +  G+CK G  + A  ++          
Sbjct: 240 VEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKP 299

Query: 508 ---CLGNVASGPT-----------------------EFKYALTILHVCRSGEAEKIIEVL 541
              C   V  G                         +  + + +   C++G  +++IE+L
Sbjct: 300 NVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELL 359

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            +M + GC P+ +  + +I+G CK G ++EA  +  N+       + NTI Y  +L
Sbjct: 360 EQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCG--CKPNTISYTIVL 413


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 120/490 (24%), Positives = 202/490 (41%), Gaps = 68/490 (13%)

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRR-----NLCKP- 201
           Y+H   ++  +   LS  N     + +P ++    +  E+   L +M+      +L K  
Sbjct: 62  YRHKNRTFRNINDALSAFNHMVNTNPLPSIV----KFGELFSALVRMKHYKTVVSLSKQM 117

Query: 202 -------DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
                  DV + T +I       ++D    V  ++ K  +E +V+ + TLI G C  G++
Sbjct: 118 EMAGISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKI 177

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
            R  ELF  M   G   +   Y ++I+GL   GK  +   LL+ +   G   D+ IYN+I
Sbjct: 178 GRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTI 237

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM----- 369
           +  LC+ +  ++A  +F       + P   T   L+     +GR    F LL +M     
Sbjct: 238 VDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNI 297

Query: 370 --EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
             + + FSV  D       ++ KE  +  A  + + +   G    V  YN LM       
Sbjct: 298 MPDLVAFSVLID-------IMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRM 350

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
           EV +A  +F  M       +  SFSI +  + ++  I EA +  +++     +P   +YN
Sbjct: 351 EVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYN 410

Query: 487 CLTKGLC-----------------------------------KIGEIDAAMMLVRDCLGN 511
            L  GLC                                   K G +D AM L R  + N
Sbjct: 411 TLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFR-AMEN 469

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
               P    Y + I  +C+ G+ +   E+  E++ +G  PN  +C+  I G+CK G L+E
Sbjct: 470 SGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDE 529

Query: 572 ARKVFTNLRE 581
           A K F  + +
Sbjct: 530 AHKAFRQMEK 539



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 174/412 (42%), Gaps = 59/412 (14%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           +GYK N  SY+ +   L R                 G+  E++++LE M+   C+PDV  
Sbjct: 190 RGYKPNVHSYSIIIKGLCR----------------VGKTTEVIKLLEHMKVVGCEPDVVI 233

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  ++  L  +R ++  + ++ +MK   +   V+ Y +LI GL   GR      L  EMK
Sbjct: 234 YNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMK 293

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
              I+ D   + VLI+ +  EG+V +A  +LK + + G   D+  YN+++ G C   +  
Sbjct: 294 GGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVV 353

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +A K+FEV +                     GRM + F                    F 
Sbjct: 354 EARKVFEVMISK-------------------GRMPDVFS-------------------FS 375

Query: 386 FLVG---KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGL 441
            LV    K +RI  A  +F+E+  +G     + YN L+  L +     +A  LF  M   
Sbjct: 376 ILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSN 435

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
               N +++SI + C  + G + +A      +      P +  YN +  G+CK G+   A
Sbjct: 436 GYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDA 495

Query: 502 MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
             L  + L      P  +    TI  VC+ G  ++  +   +M ++ C P +
Sbjct: 496 RELFAE-LSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSPAQ 546



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 124/261 (47%), Gaps = 24/261 (9%)

Query: 117 VTPDLVAEVLKVE----NNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRA 170
           + PDLVA  + ++          ++       + G + + A+YN L   YCL    +   
Sbjct: 297 IMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVV--E 354

Query: 171 ADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK 230
           A +V E+M S+GR+                PDVF+++ ++      + +D   ++++EM 
Sbjct: 355 ARKVFEVMISKGRM----------------PDVFSFSILVNGYCKAKRIDEAKQLFDEMT 398

Query: 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
              +  D ++Y TLI GLC+  R +   ELF++M  NG   +   Y +L++ L  +G + 
Sbjct: 399 HRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLD 458

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           +A  L + + +SG + DL  YN +I G+C+  +F  A +LF       L P+     P +
Sbjct: 459 QAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTI 518

Query: 351 VCCAEMGRMDNFFKLLAQMEK 371
               + G +D   K   QMEK
Sbjct: 519 DGVCKGGLLDEAHKAFRQMEK 539



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 165/400 (41%), Gaps = 78/400 (19%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P +  +  +   L   ++    + + ++M+   +  DV++   LI   C+   V  G  +
Sbjct: 89  PSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSV 148

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             ++ + G+  +   +  LI G   EGK+G+A +L   +V  GY+ ++  Y+ II GLCR
Sbjct: 149 LGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCR 208

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           V +  +  KL E        PD    N ++  +C                          
Sbjct: 209 VGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLC-------------------------- 242

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGK 437
                      K+  +  A+ +F ++KG G   +V  Y  L+  L  +G  K+A  L  +
Sbjct: 243 -----------KDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNE 291

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M+G N+  + ++FS+ I    + G++ EA      + EM   P VA YN L  G C   E
Sbjct: 292 MKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRME 351

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           +                                  EA K+ EV   M  +G  P+    S
Sbjct: 352 VV---------------------------------EARKVFEV---MISKGRMPDVFSFS 375

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            +++G CK   ++EA+++F  +  R L+   +T+ Y+ ++
Sbjct: 376 ILVNGYCKAKRIDEAKQLFDEMTHRGLI--PDTVSYNTLI 413


>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
 gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
          Length = 694

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 126/539 (23%), Positives = 232/539 (43%), Gaps = 63/539 (11%)

Query: 108 VTELSKLRRV--TPDLVAEVLKV---ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCL 162
           + EL K ++   T D+V  VLK       P  A   F    +  G K    SYNAL    
Sbjct: 65  IVELIKTQKCKCTEDVVLTVLKAYAKSKMPNEALDCFQKMEEIFGCKPGIRSYNALLNAF 124

Query: 163 SRNNLFRAADQVPELMDSQG-------------------RIAEMLEILEKMRRNLCKPDV 203
              NL   A+      ++ G                   +  E   +L+ M     KPDV
Sbjct: 125 IEANLLEKAESFLAYFETVGILPNLQTYNILIKISVKKRQFVEAKGLLDWMWSKDLKPDV 184

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF-R 262
           ++Y  +I  +    +L + L V++EM +  +  DVM Y  +I G  K G  V+G E++ R
Sbjct: 185 YSYGTVINGMVKSGDLVSALEVFDEMFERGLVPDVMCYNIMIDGFFKRGDYVQGKEIWER 244

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
            +K + +  +   Y V+I GL   G+  ++ ++ + +  +    DL  Y+S+I GLC V 
Sbjct: 245 LVKGSCVYPNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVG 304

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
             D A ++++  V+  +  D  T N LL      G++   F+L   M K           
Sbjct: 305 NVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKENCHNVVSYNI 364

Query: 383 FFEFLVGKEERIMMALDVFEELKGKGYSS-VPIYNILMGALLEIGEVKKALYLFGKMRGL 441
           F   L  +  ++  A+ V+E L+ +G  +    Y +L+  L + G + KAL +  + +  
Sbjct: 365 FIRGLF-ENRKVEEAISVWELLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDG 423

Query: 442 NLEVNSLSFSIAIQCHVESGDILEA-----------CE-----CH---NKIIEMSQV--- 479
             ++++ ++S  +    + G + EA           CE     C+   N  +  S++   
Sbjct: 424 GDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEA 483

Query: 480 -------------PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
                        P+V +YN L  GLCK      A   V++ L      P    Y+L + 
Sbjct: 484 ICFFREMETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWK-PDMITYSLLMD 542

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
            +C+  + +  + +  ++  +G  P+  + + ++ G+C  G +E+A  +++N+++   L
Sbjct: 543 GLCQGKKIDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCL 601



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 162/359 (45%), Gaps = 17/359 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+I E  E+   M +  C  +V +Y   IR L   R ++  + VWE +++    AD   Y
Sbjct: 339 GKIKESFELWVMMGKENCH-NVVSYNIFIRGLFENRKVEEAISVWELLRRRGSGADSTTY 397

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GLCK G + +  ++ +E K+ G  +D   Y  +++GL  +G+V +A  ++  +  
Sbjct: 398 GVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDK 457

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G      + N +I G  R  + ++A   F        +P   + N L+    +  R  +
Sbjct: 458 YGCELSPHVCNPLINGFVRASKLEEAICFFREMETKGCSPTVVSYNTLINGLCKAERFSD 517

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
            +  + +M  L+     D+  +   + G  + ++I MAL+++ ++  KG    V ++NIL
Sbjct: 518 AYSFVKEM--LEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVKGLEPDVTMHNIL 575

Query: 419 MGALLEIGEVKKALYLFGKMRGLN-----LEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           M  L   G+++ AL L+  M+  N     +  N+L   +      E   ++ AC   N  
Sbjct: 576 MHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASVIWACMFKNGF 635

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
                 P + +YN   KGLC  G I   + L  D L N    PT   + + +  V + G
Sbjct: 636 -----QPDIISYNITLKGLCSCGRISDGIALFDDALKN-GILPTSITWYILVRAVLKLG 688



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 99/431 (22%), Positives = 191/431 (44%), Gaps = 29/431 (6%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLC-KPDVFAYTAMIRVLA 214
           + + Y +  +  F+  D V      QG+     EI E++ +  C  P+V  Y  MI  L 
Sbjct: 218 DVMCYNIMIDGFFKRGDYV------QGK-----EIWERLVKGSCVYPNVVTYNVMINGLC 266

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
                D  L +WE MKK+  E D+  Y +LI GLC  G V    E+++EM +  +++D  
Sbjct: 267 KMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDVV 326

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
            Y  L+ G    GK+ ++ +L   ++      ++  YN  I GL   ++ ++A  ++E+ 
Sbjct: 327 TYNALLNGFCRAGKIKESFELWV-MMGKENCHNVVSYNIFIRGLFENRKVEEAISVWELL 385

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ-------MEKLKFSVAADLEKFFEFL 387
            +     D +T   L+    + G ++   K+L +       ++   +S   D        
Sbjct: 386 RRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIVD-------G 438

Query: 388 VGKEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
           + K+ R+  AL +  ++   G    P + N L+   +   ++++A+  F +M        
Sbjct: 439 LSKQGRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREMETKGCSPT 498

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
            +S++  I    ++    +A     +++E    P +  Y+ L  GLC+  +ID A+ L R
Sbjct: 499 VVSYNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWR 558

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
             L      P    + + +  +C +G+ E  + + + M Q  C PN V  + ++ G+ K 
Sbjct: 559 QVLVK-GLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNTLMDGLYKA 617

Query: 567 GTLEEARKVFT 577
              E A  ++ 
Sbjct: 618 RECEMASVIWA 628


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 192/432 (44%), Gaps = 24/432 (5%)

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
           ++ + ++   N   PD+   + +I     + ++     V+  + K     + +   TLI 
Sbjct: 76  VISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIK 135

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLC  G + +      ++   G  +D+  YG LI GL   G+      LL+ L     + 
Sbjct: 136 GLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKP 195

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D+ +YN+II  LC+ K    A  ++   +   ++PD  T   L+     MG +   F LL
Sbjct: 196 DVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLL 255

Query: 367 AQMEKLK--------FSVAAD-LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNI 417
            +M KLK        F++  D L K  +    KE +I++A+ +   +K   ++    YN 
Sbjct: 256 NEM-KLKNINPNVCTFNILIDALSKEGKM---KEAKILLAVMMKACIKPDVFT----YNS 307

Query: 418 LMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           L+     + EVK A Y+F  M  RG+  +V   +  I   C  +  D  EA     ++  
Sbjct: 308 LIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVD--EAMSLFEEMKH 365

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
            + +P +  YN L  GLCK   ++ A+ L +  +      P  + Y + +  +C+SG  E
Sbjct: 366 KNMIPDIVTYNSLIDGLCKNHHLERAIALCKR-MKEQGIQPDVYSYTILLDGLCKSGRLE 424

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
              E+   +  +G   N    + +I+ +CK G  +EA  + + + ++  + +A  + +D 
Sbjct: 425 DAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDA--VTFDI 482

Query: 596 ILIEHMKKKTAD 607
           I+    +K   D
Sbjct: 483 IIRALFEKDEND 494



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 185/412 (44%), Gaps = 10/412 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q  I     +   + +    P+      +I+ L     +   L   +++     + D ++
Sbjct: 105 QAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVS 164

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI GLCK G       L R+++ + +  D  +Y  +I  L     +G ACD+  +++
Sbjct: 165 YGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMI 224

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   D+  Y ++I G C +    +A+ L       ++ P+  T N L+   ++ G+M 
Sbjct: 225 VKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMK 284

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYNI 417
               LLA M  +K  +  D+  +   + G    + +  A  VF  +  +G +  V  Y  
Sbjct: 285 EAKILLAVM--MKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTN 342

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++  L +   V +A+ LF +M+  N+  + ++++  I    ++  +  A     ++ E  
Sbjct: 343 MINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQG 402

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL--HVCRSGEAE 535
             P V +Y  L  GLCK G ++ A  + +  L   A G     +A T+L   +C++G  +
Sbjct: 403 IQPDVYSYTILLDGLCKSGRLEDAKEIFQRLL---AKGYHLNVHAYTVLINRLCKAGFFD 459

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           + +++ ++M  +GC P+ V    II  + +    ++A K+   +  R LL E
Sbjct: 460 EALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIARGLLKE 511


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 135/556 (24%), Positives = 224/556 (40%), Gaps = 50/556 (8%)

Query: 82  QRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVEN-----NPTLAS 136
           + H+  ++  + D FRK +  W           R+   + V  V K EN     N   + 
Sbjct: 4   KSHVFGLSGGVID-FRKPKGTWS----------RKHLGNCVFAVSKYENSGLKGNLQHSE 52

Query: 137 KFFHWAGKQKGYKHNFASYNALAYC-LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMR 195
           +F   A        NF        C L RN       +  E M ++G+I           
Sbjct: 53  RFSKGALNGVNTSLNFEESEIHHLCRLIRNGELEEGSRFLEYMTNKGKI----------- 101

Query: 196 RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVV 255
                PDV A TA+IR            R+   +++     D  +Y  LI   CK G + 
Sbjct: 102 -----PDVVACTALIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEI- 155

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
              E  R +    +  + A Y  ++  L   GK+ +A  +L   + S    D+     +I
Sbjct: 156 --EEALRVLDHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLI 213

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
              C+     +A KLF         PD  T N L+    + GR+D     L ++    + 
Sbjct: 214 DATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLP--SYG 271

Query: 376 VAADLEKFFEFL--VGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKAL 432
             +D+      L  +    R M A+ +   +  KG + SV  +NIL+  L + G + KAL
Sbjct: 272 CQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKAL 331

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            +   M       NS SF+  IQ       I  A E    ++     P +  YN L   L
Sbjct: 332 NVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTAL 391

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           CK G++D A++++   L +    P+   Y   I  + + G+AE  +E+L EM  +G  P+
Sbjct: 392 CKDGKVDDAVVILSQ-LSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPD 450

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSG 612
            + C++++ G+ + G + EA K F  L+   +  + N  +Y+ I++   K +   L +  
Sbjct: 451 LITCTSVVGGLSREGKVHEAIKFFHYLKGFGI--KPNAFIYNSIMMGLCKAQQTSLAIDF 508

Query: 613 LKFFGLESKLKAKGCK 628
           L        + A GCK
Sbjct: 509 L------VDMVANGCK 518



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 180/421 (42%), Gaps = 6/421 (1%)

Query: 171 ADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK 230
           A+    L+++  +  E+ E L  +      P+   Y A++  L     L   ++V +   
Sbjct: 139 ANSYNVLINAYCKSGEIEEALRVLDHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQL 198

Query: 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
           +     DV+    LI   CK   V +  +LF EM+  G   D   Y VLI+G   EG++ 
Sbjct: 199 QSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLD 258

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           +A   LK L   G ++D+  +N I+  LC   ++  A KL    ++    P   T N L+
Sbjct: 259 EAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILI 318

Query: 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKG 408
               + G +     +L  M K   +   +   F   + G   R  I  A++  E +  +G
Sbjct: 319 NFLCQKGLLGKALNVLEMMPKHGHT--PNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRG 376

Query: 409 -YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
            Y  +  YNIL+ AL + G+V  A+ +  ++       + +S++  I   ++ G    A 
Sbjct: 377 CYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAV 436

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
           E   ++      P +     +  GL + G++  A+      L      P  F Y   ++ 
Sbjct: 437 ELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHY-LKGFGIKPNAFIYNSIMMG 495

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           +C++ +    I+ L +M   GC P E   + +I G+   G  EEA K+   L  R L+ +
Sbjct: 496 LCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRGLVKK 555

Query: 588 A 588
           +
Sbjct: 556 S 556


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 101/441 (22%), Positives = 184/441 (41%), Gaps = 44/441 (9%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
            E MR    +P+V +YT +I   A  ++L   +   EEM+ + V  +   Y  +I G  +
Sbjct: 215 FESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGR 274

Query: 251 GGRVVRGHELF-REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
            G V      F R + EN    D  IY  +I      G + +A  ++  + + G  A LG
Sbjct: 275 LGDVEAAERWFQRALSENWHHND-VIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLG 333

Query: 310 IYNSIIGGLCRVKQFDKAYKLF---EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           +YN ++ G    +  DK   +F   +   +  L+P   +   L+   +++G+MD   ++ 
Sbjct: 334 LYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQIS 393

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGYSSVPI-YNILMGALL 423
            +ME     +  + + +   + G  +      A  VFE++   G     I YNILM A  
Sbjct: 394 NEMEDQ--GIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFC 451

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G++ +AL L  +M   +      +++I I   ++ GD+  A E    +      PS A
Sbjct: 452 KNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAA 511

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRD---------------------CLGN----------- 511
            YN +  GL + G++D A  ++ +                     C+G+           
Sbjct: 512 TYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRI 571

Query: 512 --VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
             V   P    YA  +   C++G  +  + +  EM   G P N  I + ++ G  + G +
Sbjct: 572 KEVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDM 631

Query: 570 EEARKVFTNLRERKLLTEANT 590
            EA  +   +R   L  + ++
Sbjct: 632 WEASDIMQKMRHEGLTPDIHS 652



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 143/376 (38%), Gaps = 47/376 (12%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G  A    + E M     KPD   Y  ++        ++  L +   M+       +  Y
Sbjct: 419 GDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTY 478

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I G  K G +    E  R+MK  G     A Y V++ GL   G++ +A  ++ ++V 
Sbjct: 479 TIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVV 538

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G   +   Y ++I G   +     A+K F    +  L PD      LL  C + GRM +
Sbjct: 539 AGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQS 598

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP----IYNI 417
              + A+M                                        + VP    IYNI
Sbjct: 599 TLAITAEM--------------------------------------AAAGVPMNNYIYNI 620

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+    + G++ +A  +  KMR   L  +  S++  I    ++GD+L+A E   ++ +  
Sbjct: 621 LLDGWAQRGDMWEASDIMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQG 680

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYALTILH---VCRSG 532
             P++ AY  L  G       + A++   +    G +   P       ++L    V R  
Sbjct: 681 VQPNLQAYTTLIHGWASASYPEKALICYDEMKSAGMIPDKPLYHCIMTSLLSRAAVARET 740

Query: 533 EAEKIIEVLNEMTQEG 548
             + ++ V +EM  +G
Sbjct: 741 VFDGVLRVTSEMVDQG 756



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 147/372 (39%), Gaps = 19/372 (5%)

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
           A + +DA  R+ +  ++D        +  L+    K G        F  M+  GI  +  
Sbjct: 177 ARKVVDAFKRIKKPKQRD--------HTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVH 228

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
            Y  LI        +  A   ++++   G   +   Y+ II G  R+   + A + F+  
Sbjct: 229 SYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRA 288

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI 394
           + ++   +    N ++    + G M+    ++  ME+        L             +
Sbjct: 289 LSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAV 348

Query: 395 MMALDVFEELKGK---GYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
              L+VF  LK +   G S +V  Y  L+    ++G++ KAL +  +M    ++ N  ++
Sbjct: 349 DKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTY 408

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           S+ I  +V+ GD   A      +      P    YN L    CK G+++ A+ L    L 
Sbjct: 409 SMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALEL----LA 464

Query: 511 NVASG---PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            + SG   PT   Y + I    + G+     E + +M   G  P+    + I+ G+ + G
Sbjct: 465 RMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAG 524

Query: 568 TLEEARKVFTNL 579
            ++ A  +   +
Sbjct: 525 QMDRAASIIDEM 536



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 54/111 (48%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + E  +I++KMR     PD+ +YT+ I       ++       E+MK+  V+ ++ A
Sbjct: 628 RGDMWEASDIMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQA 687

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
           Y TLI G        +    + EMK  G++ D+ +Y  ++  L+    V +
Sbjct: 688 YTTLIHGWASASYPEKALICYDEMKSAGMIPDKPLYHCIMTSLLSRAAVAR 738



 Score = 45.8 bits (107), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 70/167 (41%), Gaps = 1/167 (0%)

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G+   A   F  MR   +E N  S++  I  +  + D+  A  C  ++      P+ A Y
Sbjct: 206 GDKHSARAAFESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATY 265

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
           + +  G  ++G+++AA    +  L        +  Y   I   C++G  E+   ++  M 
Sbjct: 266 SVIISGYGRLGDVEAAERWFQRALSENWH-HNDVIYNNIIHAYCKAGNMERAEAIMTAME 324

Query: 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           ++G      + + ++ G      +++   VF  L+ R     + T+V
Sbjct: 325 EQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVV 371


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 177/392 (45%), Gaps = 37/392 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I +  ++L ++R     P+V  YT +I     +  ++    ++ EM K  + A+   Y
Sbjct: 177 GEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTY 236

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GL K G   +G E++ +M+E+G+  +   Y  ++  L  +G+   A  +  ++ +
Sbjct: 237 TVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRE 296

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++  YN++IGGLCR  + ++A K+ +      + P+  T N L+     +G++  
Sbjct: 297 RGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKL-- 354

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
                                      GK      AL +  +LK +G S S+  YN+L+ 
Sbjct: 355 ---------------------------GK------ALSLCRDLKSRGLSPSLVTYNVLVS 381

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
                G+   A  +  +M    ++ + ++++I I     S ++  A +  + + E+  VP
Sbjct: 382 GFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVP 441

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  Y+ L  G C  G+++ A  L +  +  +   P E  Y   IL  C+ G + + + +
Sbjct: 442 DVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLE-PNEVIYNTMILGYCKEGSSYRALRL 500

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
             +M ++   PN    S +I  +CK   L+EA
Sbjct: 501 FRDMEEKELAPNVASYSYLIRVLCKERKLKEA 532



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 168/374 (44%), Gaps = 39/374 (10%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           V  DV ++  +I G C+ G + +  +L  E++E G   +  IY  LI+G   +G++ KA 
Sbjct: 159 VVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAK 218

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           DL  ++   G  A+   Y  +I GL +     + ++++E   +  + P+  T N ++   
Sbjct: 219 DLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQL 278

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SV 412
            + GR  + FK                                   VF+E++ +G S ++
Sbjct: 279 CKDGRTKDAFK-----------------------------------VFDEMRERGVSCNI 303

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             YN L+G L    +  +A  +  +M+   +  N ++++  I      G + +A      
Sbjct: 304 VTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRD 363

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           +      PS+  YN L  G C+ G+   A  +V++ +      P++  Y + I    RS 
Sbjct: 364 LKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKE-MEERGIKPSKVTYTILIDTFARSD 422

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
             E  I++ + M + G  P+    S +I G C  G + EA ++F ++ E+ L  E N ++
Sbjct: 423 NMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKML--EPNEVI 480

Query: 593 YDEILIEHMKKKTA 606
           Y+ +++ + K+ ++
Sbjct: 481 YNTMILGYCKEGSS 494



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 133/318 (41%), Gaps = 34/318 (10%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            E+ EKM+ +   P+++ Y  ++  L  +       +V++EM++  V  +++ Y TLI G
Sbjct: 253 FEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGG 312

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC+  +    +++  +MK   I  +   Y  LI+G    GK+GKA  L +DL   G    
Sbjct: 313 LCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPS 372

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           L  YN ++ G CR      A K+ +   +  + P   T   L+   A    M+   +L +
Sbjct: 373 LVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRS 432

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE 427
            ME+L                                       V  Y++L+      G+
Sbjct: 433 SMEELGL----------------------------------VPDVHTYSVLIHGFCIKGQ 458

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           + +A  LF  M    LE N + ++  I  + + G    A      + E    P+VA+Y+ 
Sbjct: 459 MNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSY 518

Query: 488 LTKGLCKIGEIDAAMMLV 505
           L + LCK  ++  A  LV
Sbjct: 519 LIRVLCKERKLKEAEDLV 536



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 152/379 (40%), Gaps = 35/379 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I +  ++  +M +     + + YT +I  L           ++E+M++  V  ++  
Sbjct: 211 KGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYT 270

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  ++  LCK GR     ++F EM+E G+  +   Y  LI GL  E K  +A  ++  + 
Sbjct: 271 YNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMK 330

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 +L  YN++I G C V +  KA  L        L+P   T N L+      G   
Sbjct: 331 SYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTS 390

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
              K++ +ME+                                 +G   S V  Y IL+ 
Sbjct: 391 GAAKMVKEMEE---------------------------------RGIKPSKVT-YTILID 416

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
                  ++ A+ L   M  L L  +  ++S+ I      G + EA      ++E    P
Sbjct: 417 TFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEP 476

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +   YN +  G CK G    A+ L RD +      P    Y+  I  +C+  + ++  ++
Sbjct: 477 NEVIYNTMILGYCKEGSSYRALRLFRD-MEEKELAPNVASYSYLIRVLCKERKLKEAEDL 535

Query: 541 LNEMTQEGCPPNEVICSAI 559
           + +M   G  P++ IC+ I
Sbjct: 536 VEKMIDSGIDPSDTICNLI 554



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 104/232 (44%), Gaps = 20/232 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSR----NNLFRAADQV------PELMD---------SQGRI 184
           +++G   N  +YN L   L R    N   +  DQ+      P L+          S G++
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKL 354

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            + L +   ++     P +  Y  ++     + +     ++ +EM++  ++   + Y  L
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTIL 414

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I    +   +    +L   M+E G++ D   Y VLI G   +G++ +A  L K +V+   
Sbjct: 415 IDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKML 474

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-VCCAE 355
             +  IYN++I G C+     +A +LF    + +LAP+ ++ + L+ V C E
Sbjct: 475 EPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKE 526



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 16/204 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K +G   +  +YN L     R      A ++ + M+ +G                 KP  
Sbjct: 365 KSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERG----------------IKPSK 408

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT +I   A   N++  +++   M++  +  DV  Y  LI G C  G++     LF+ 
Sbjct: 409 VTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKS 468

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M E  +  +  IY  +I G   EG   +A  L +D+ +     ++  Y+ +I  LC+ ++
Sbjct: 469 MVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERK 528

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVN 347
             +A  L E  +   + P  +  N
Sbjct: 529 LKEAEDLVEKMIDSGIDPSDTICN 552



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 93/225 (41%), Gaps = 41/225 (18%)

Query: 401 FEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
           F E K K    V  + I++    E GE++K+  L  ++R                     
Sbjct: 152 FNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELR--------------------- 190

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
                         E    P+V  Y  L  G CK GEI+ A  L  + +G       E+ 
Sbjct: 191 --------------EFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFE-MGKFGLVANEWT 235

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           Y + I  + ++G  ++  E+  +M + G  PN    + +++ +CK G  ++A KVF  +R
Sbjct: 236 YTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMR 295

Query: 581 ERKLLTEANTIVYDEI---LIEHMKKKTADLVLSGLKFFGLESKL 622
           ER +    N + Y+ +   L   MK   A+ V+  +K + +   L
Sbjct: 296 ERGV--SCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNL 338


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 93/430 (21%), Positives = 196/430 (45%), Gaps = 11/430 (2%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++ + M R    PD  ++ A++ V   E  ++    +   M +     D      ++  L
Sbjct: 167 KVFDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSL 226

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C+ GR     E FR M E G   +   Y   I+GL     V +A  +L+++V  G + ++
Sbjct: 227 CEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNV 286

Query: 309 GIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
             + ++I GLC++   ++A++LF ++       P+  T   ++      G++     LL 
Sbjct: 287 YTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLV 346

Query: 368 QMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGY-SSVPIYNILMGALL 423
           +M +       +    +  L+G   K      A ++  ++K +G+  ++  YN ++    
Sbjct: 347 RMVEQGLKPNTNT---YTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFC 403

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G++++A  +        L+ + ++++I I  H + G I  A +  ++++E    P + 
Sbjct: 404 KKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIE 463

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           AY  L    C+  +++ +      CL  +   PT+  Y   I   C+ G +   + V   
Sbjct: 464 AYTSLISTYCQQRQMEESQKFFDKCL-MIGLLPTKQTYTSMIAGYCKVGRSTLALRVFER 522

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           M Q GC  + +   A+ISG+CK   LEEA+ ++  + +++L+    T V   +  E+ ++
Sbjct: 523 MVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVPCEVTRV--TLTFEYCRR 580

Query: 604 KTADLVLSGL 613
           +   + +S L
Sbjct: 581 EKTSIAVSVL 590



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 159/371 (42%), Gaps = 13/371 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR  ++ E   +M      P+V  YTA I  L   R +     V EEM    ++ +V  
Sbjct: 229 KGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYT 288

Query: 241 YVTLIMGLCKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           + TLI GLCK G   R   LF ++ K +    +   Y V+I G   EGK+ +A  LL  +
Sbjct: 289 HTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRM 348

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V+ G + +   Y ++IGG C+   FD+A++L     Q+   P+  T N ++    + G++
Sbjct: 349 VEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKI 408

Query: 360 DNFFKLL--AQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVP 413
              +K+L  A  + LKF         +  L+    K+  I  ALD+F+ +   G    + 
Sbjct: 409 QEAYKVLRMATSQGLKFDKIT-----YTILITEHCKQGHITYALDLFDRMVENGCCPDIE 463

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            Y  L+    +  +++++   F K   + L     +++  I  + + G    A     ++
Sbjct: 464 AYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERM 523

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           ++         Y  L  GLCK   ++ A  L    L      P E          CR  +
Sbjct: 524 VQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRLV-PCEVTRVTLTFEYCRREK 582

Query: 534 AEKIIEVLNEM 544
               + VL+ +
Sbjct: 583 TSIAVSVLDRL 593



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 153/366 (41%), Gaps = 22/366 (6%)

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           YVT        G +   HE+ R M               +      G++ +A D++ ++ 
Sbjct: 94  YVTAATAFVARGSLPMAHEVMRGM---------------VAAFGEAGRLPEAADMVLEMR 138

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G    +   N ++        F  A K+F+   +  + PD  +   L+V C   G+++
Sbjct: 139 SHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVCCREGKVE 198

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILM 419
               LLA M +  FS+           + ++ R     + F  +   G   +V  Y   +
Sbjct: 199 EVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWI 258

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L +   VK+A ++  +M G  L+ N  + +  I    + G    A     K+I+ S  
Sbjct: 259 DGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSY 318

Query: 480 -PSVAAYNCLTKGLCKIGEI-DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
            P+V  Y  +  G C+ G++  A M+LVR  +      P    Y   I   C+ G  ++ 
Sbjct: 319 KPNVHTYTVMIGGYCREGKLARAEMLLVR--MVEQGLKPNTNTYTTLIGGHCKGGSFDRA 376

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            E++N+M QEG  PN    +A+I G CK G ++EA KV      + L  + + I Y  ++
Sbjct: 377 FELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGL--KFDKITYTILI 434

Query: 598 IEHMKK 603
            EH K+
Sbjct: 435 TEHCKQ 440



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 138/316 (43%), Gaps = 14/316 (4%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           KP+V  YT MI     E  L     +   M +  ++ +   Y TLI G CKGG   R  E
Sbjct: 319 KPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFE 378

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L  +MK+ G L +   Y  +I+G   +GK+ +A  +L+     G + D   Y  +I   C
Sbjct: 379 LMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHC 438

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +      A  LF+  V++   PD      L+    +  +M+   K   +   L   +   
Sbjct: 439 KQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKC--LMIGLLPT 496

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFG 436
            + +   + G  K  R  +AL VFE +   G ++    Y  L+  L +   +++A  L+ 
Sbjct: 497 KQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYE 556

Query: 437 KM---RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
            M   R +  EV  ++ +    C  E   I  A    +++ +  QV +V   + + + L 
Sbjct: 557 GMLDKRLVPCEVTRVTLTFEY-CRREKTSI--AVSVLDRLDKRQQVHTV---DVVVRKLS 610

Query: 494 KIGEIDAAMMLVRDCL 509
            +G++DAA + ++  L
Sbjct: 611 ALGDVDAASLFLKKVL 626



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 20/200 (10%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           KQ+G+  N  +YNA+   +C                   +G+I E  ++L        K 
Sbjct: 384 KQEGFLPNIYTYNAVIDGFC------------------KKGKIQEAYKVLRMATSQGLKF 425

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           D   YT +I     + ++   L +++ M ++    D+ AY +LI   C+  ++    + F
Sbjct: 426 DKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFF 485

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            +    G+L  +  Y  +I G    G+   A  + + +V +G  AD   Y ++I GLC+ 
Sbjct: 486 DKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKE 545

Query: 322 KQFDKAYKLFEVTVQDDLAP 341
            + ++A  L+E  +   L P
Sbjct: 546 SRLEEAKALYEGMLDKRLVP 565


>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 726

 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 104/475 (21%), Positives = 204/475 (42%), Gaps = 41/475 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAA-------------------DQVPELMDSQGRI 184
           + KG K N A+Y    Y LSR     +A                   + V +    +G++
Sbjct: 238 EMKGVKPNAATYGTYLYGLSRTRQVASAWNFLQMLCQRGNPCNTYCFNAVIQGFCREGQV 297

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E +E+ + M++    PD  +Y+ ++  L  + ++     +  EM ++ +   +++Y +L
Sbjct: 298 QEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSL 357

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + GLC+ G+V    ELFR ++E G   D  +Y +++ G      +   CDL  D+V   +
Sbjct: 358 LHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNF 417

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D   Y S+I   CR +    A  +FE+ +   ++P+  T   L+    +   +D  F 
Sbjct: 418 VPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFL 477

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IYNILM 419
            L ++   +F +  +L  +   + G  K  +      +F ++  +GY  VP   +Y+I++
Sbjct: 478 FLHKVR--QFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGY--VPDTVVYSIII 533

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            + ++  ++ +A  LF KM     + N  +++  I        + E       +I     
Sbjct: 534 DSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFKHMIWEGLT 593

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P    Y  L    CK   + AA+ + R  +G +      F      L+ C  G   K++ 
Sbjct: 594 PDRILYTSLIVCYCKRSNMKAALEIFRG-MGKLGLSADAF------LYTCLIGGFSKVLA 646

Query: 540 ------VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
                 ++ EMT +G  P+ V  + +I G  K G   +A   + ++ +  +  +A
Sbjct: 647 MDGAQCLMEEMTNKGLTPSVVTYTNLIIGYFKIGDERKANMTYNSMLQAGITPDA 701



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 169/408 (41%), Gaps = 6/408 (1%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           +AE  E+L +M     KP+   Y   +  L+  R + +     + + +     +   +  
Sbjct: 227 LAEAFELLSEMEMKGVKPNAATYGTYLYGLSRTRQVASAWNFLQMLCQRGNPCNTYCFNA 286

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I G C+ G+V    E+F  MK+ G++ D   Y +L++GL  +G V    DLL ++  +G
Sbjct: 287 VIQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNG 346

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
               L  Y+S++ GLCR  + + A++LF    +     D    + +L  C +   ++   
Sbjct: 347 IAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVC 406

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGAL 422
            L   M    F   A       +   +   +  AL VFE +   G S +V    IL+   
Sbjct: 407 DLWNDMVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGF 466

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQVP 480
            +   + +A     K+R   +  N   + + I   C V   D          +I+   VP
Sbjct: 467 GKERMIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNKSD--HVWGIFADMIKRGYVP 524

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
               Y+ +     K  ++  A  L    L +  + P  F Y   I  +C      +++ +
Sbjct: 525 DTVVYSIIIDSFVKALKLPEAFRLFHKML-DEGTKPNVFTYTSLINGLCHDDRLPEVVTL 583

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
              M  EG  P+ ++ +++I   CK   ++ A ++F  + +  L  +A
Sbjct: 584 FKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALEIFRGMGKLGLSADA 631



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 165/378 (43%), Gaps = 10/378 (2%)

Query: 225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRV--VRGHELFREMKENGILIDRAIYGVLIEG 282
           ++++MK      +V +Y  L+     G R+      EL  EM+  G+  + A YG  + G
Sbjct: 196 LFDDMKSSGPSPNVYSYSVLMSAYTHGDRLYLAEAFELLSEMEMKGVKPNAATYGTYLYG 255

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           L    +V  A + L+ L   G   +   +N++I G CR  Q  +A ++F+   +  L PD
Sbjct: 256 LSRTRQVASAWNFLQMLCQRGNPCNTYCFNAVIQGFCREGQVQEAIEVFDAMKKGGLVPD 315

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDV 400
             + + L+    + G +   + LL +M   +  +A  L  +   L G  +  ++ +A ++
Sbjct: 316 THSYSILVDGLCKQGDVLTGYDLLVEMA--RNGIAPTLVSYSSLLHGLCRAGKVELAFEL 373

Query: 401 FEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           F  L+ +G+    I Y+I++    +   ++    L+  M   N   ++ +++  I     
Sbjct: 374 FRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPDAYNYTSLIYAFCR 433

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
             ++ +A      +++    P+V     L  G  K   ID A + +   +      P   
Sbjct: 434 HRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHK-VRQFGIVPNLC 492

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            Y + I  +C+  +++ +  +  +M + G  P+ V+ S II    K   L EA ++F  +
Sbjct: 493 MYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKM 552

Query: 580 RERKLLTEANTIVYDEIL 597
            +    T+ N   Y  ++
Sbjct: 553 LDEG--TKPNVFTYTSLI 568


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 183/438 (41%), Gaps = 41/438 (9%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER--NLDACLRVWEEMKKDLVEADVMAYV 242
            E LE  E M +     D    + ++ +LA  R   +D+CLR +  M    VE  V +  
Sbjct: 176 GEALEAFEHMEKKGFHID--ERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLT 233

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++ GLCK G V  G +L  E+   G+  +   Y   IEG      +G   ++L  +   
Sbjct: 234 IVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKE 293

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   ++  Y  +I G   + + ++A +LFE   +  +  D      ++ C    G +   
Sbjct: 294 GVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRA 353

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYNILMGA 421
             L  +M       +A         V K  ++  A  +  E++GKG    P I+N L+  
Sbjct: 354 LVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDG 413

Query: 422 LLEIGEVKKALYLFGKM--RGLNLEV---------------------------------N 446
             E G V +AL L   M  +GL  +V                                 N
Sbjct: 414 YCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPN 473

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           ++SF+  I  + + G+ +EA     ++ E   VP++  YN L  G  K G +  A  L +
Sbjct: 474 TMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKL-K 532

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
           D L N    P  +     I   C  G+ +  +++ +EM Q G  PN V  +A+ISG+ K 
Sbjct: 533 DELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKD 592

Query: 567 GTLEEARKVFTNLRERKL 584
           G  EEA K++  ++E  L
Sbjct: 593 GRSEEAFKLYDEMKETGL 610



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 173/388 (44%), Gaps = 6/388 (1%)

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           +  + RV A  +     L  +E M+K     D  + +  ++ L +GG+V      FR M 
Sbjct: 162 FDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMV 221

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
              + +      ++++GL   G V     L+ ++   G +A++  YN+ I G  +     
Sbjct: 222 NLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLG 281

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
              ++  +  ++ +A +  T   L+   + +G+++   +L  +M +    + AD+  +  
Sbjct: 282 GVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREK--GIEADVYVYTS 339

Query: 386 FLV--GKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            +    +   +  AL +F+E+  KG   S   Y  L+  + + G+++ A  L  +M+G  
Sbjct: 340 IISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKG 399

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           +++N + F+  I  + ESG + EA      + +      V AYN +  GLCK+   D A 
Sbjct: 400 IDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAK 459

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            L+   +    S P    +   I   C+ G   +   V  EM ++G  PN +  + +I G
Sbjct: 460 GLLFSMVERGVS-PNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDG 518

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANT 590
             K G ++EA K+   L  R L+ +  T
Sbjct: 519 YSKRGNMKEAHKLKDELENRGLIPDVYT 546



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 173/438 (39%), Gaps = 91/438 (20%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAE 186
           KG K N  +YNA      +        ++  LM+ +G                   +I E
Sbjct: 258 KGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEE 317

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
              + E+MR    + DV+ YT++I       N+   L +++EM    +      Y  LI 
Sbjct: 318 AQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIH 377

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           G+CK G++     L  EM+  GI ++  I+  LI+G    G V +A  L   +   G  +
Sbjct: 378 GVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLES 437

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-VCCAEMGRMDNFFKL 365
           D+  YNSI  GLC++ + D+A  L    V+  ++P+  +   L+ + C            
Sbjct: 438 DVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYC------------ 485

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEI 425
                                   KE   + A  VF E++ KG  +VP            
Sbjct: 486 ------------------------KEGNFVEAKRVFREMEEKG--NVP------------ 507

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
                               N +++++ I  + + G++ EA +  +++     +P V   
Sbjct: 508 --------------------NIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTC 547

Query: 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545
             L  G C  G++D A+ L  D +      P    Y   I  + + G +E+  ++ +EM 
Sbjct: 548 TSLIHGECIDGKVDMALKLF-DEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMK 606

Query: 546 QEGCPPNEVICSAIISGM 563
           + G  P++ + S+++  +
Sbjct: 607 ETGLTPDDTVYSSLVGSL 624


>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 185/410 (45%), Gaps = 9/410 (2%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           +++  E+ E+MRR     D+F Y  ++  LA    +D   +V+E+MK+   E D   Y  
Sbjct: 202 VSKGFEVYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQKYCEPDAYTYTI 261

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           LI    + G+  +    F EM   G  ++   Y  LIE L     V K   +L  +++ G
Sbjct: 262 LIRMSGRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVIFVLSKMIEGG 321

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            + +   Y+  +  L +  Q    ++L EV    D   + S  + L+   ++ G +    
Sbjct: 322 CQPNQFTYSITLDILAKEGQL---HRLNEVLDICDRYMNKSIYSYLVKSLSKSGHVSEAH 378

Query: 364 KLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYSS-VPIYNILMG 420
            +  QM         D + F   L  +    + + A+D+   +  KG ++ V +YN++  
Sbjct: 379 NVFCQM--WNSYETGDRDAFVSMLEVLCNSGKTLEAIDLLHMMPEKGVATDVGMYNMVFS 436

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           AL ++ +V     LF KM+   +  +  +++I I  +   G + +A      +   S  P
Sbjct: 437 ALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNASSCKP 496

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  YN L   L K G++D A ML ++ +     GP  F Y++ I    +S + +    +
Sbjct: 497 DVITYNSLINCLGKNGDLDEAHMLFKE-MQEKGYGPDVFTYSILIECFGKSNKVDMACNL 555

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             +M  EGC PN V  + ++  + +HG   EA K +  ++++ L  ++ T
Sbjct: 556 FLDMIAEGCIPNVVTYNILLDCLERHGKTAEAHKHYETMKQQGLTPDSIT 605



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/419 (21%), Positives = 181/419 (43%), Gaps = 25/419 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++KGY  +   YN L   L+++                G + +  ++ E M++  C+PD 
Sbjct: 213 RRKGYMLDIFGYNMLLDALAKS----------------GMVDQAYQVFEDMKQKYCEPDA 256

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           + YT +IR+          L  ++EM       +++AY TLI  L K   V +   +  +
Sbjct: 257 YTYTILIRMSGRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVIFVLSK 316

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M E G   ++  Y + ++ L  EG++ +  ++L D+ D     +  IY+ ++  L +   
Sbjct: 317 MIEGGCQPNQFTYSITLDILAKEGQLHRLNEVL-DICDR--YMNKSIYSYLVKSLSKSGH 373

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
             +A+ +F          D      +L      G+      LL  M +   +    +   
Sbjct: 374 VSEAHNVFCQMWNSYETGDRDAFVSMLEVLCNSGKTLEAIDLLHMMPEKGVATDVGMYNM 433

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
               +GK +++     +F+++K  G +  +  YNI++ +   +G V KA  LF  M   +
Sbjct: 434 VFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNASS 493

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
            + + ++++  I C  ++GD+ EA     ++ E    P V  Y+ L +   K  ++D A 
Sbjct: 494 CKPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMAC 553

Query: 503 MLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            L  D    +A G  P    Y + +  + R G+  +  +    M Q+G  P+ + CS +
Sbjct: 554 NLFLDM---IAEGCIPNVVTYNILLDCLERHGKTAEAHKHYETMKQQGLTPDSITCSIL 609



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 156/398 (39%), Gaps = 53/398 (13%)

Query: 92  ITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAE--VLKVENNPTLASKFFHWAGK--QKG 147
           + DA  K+        V E  K +   PD      ++++      ASKF  +  +   KG
Sbjct: 227 LLDALAKSGMVDQAYQVFEDMKQKYCEPDAYTYTILIRMSGRAGKASKFLSFFDEMVSKG 286

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYT 207
              N  +YN L   L +N +                + +++ +L KM    C+P+ F Y+
Sbjct: 287 CALNLIAYNTLIEALGKNKM----------------VDKVIFVLSKMIEGGCQPNQFTYS 330

Query: 208 AMIRVLAAERNL-------DACLR-------------------------VWEEMKKDLVE 235
             + +LA E  L       D C R                         V+ +M      
Sbjct: 331 ITLDILAKEGQLHRLNEVLDICDRYMNKSIYSYLVKSLSKSGHVSEAHNVFCQMWNSYET 390

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
            D  A+V+++  LC  G+ +   +L   M E G+  D  +Y ++   L    +V     L
Sbjct: 391 GDRDAFVSMLEVLCNSGKTLEAIDLLHMMPEKGVATDVGMYNMVFSALGKLKQVSFITSL 450

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
              +  +G   DL  YN +I    RV   DKA  LFE        PD  T N L+ C  +
Sbjct: 451 FDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNASSCKPDVITYNSLINCLGK 510

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPI 414
            G +D    L  +M++  +              GK  ++ MA ++F ++  +G   +V  
Sbjct: 511 NGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACNLFLDMIAEGCIPNVVT 570

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           YNIL+  L   G+  +A   +  M+   L  +S++ SI
Sbjct: 571 YNILLDCLERHGKTAEAHKHYETMKQQGLTPDSITCSI 608


>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic [Vitis vinifera]
          Length = 929

 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 104/462 (22%), Positives = 188/462 (40%), Gaps = 76/462 (16%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL-- 248
            E MR    +P    YT++I   A  R+++  L    +MK++ +E  ++ Y  L+ G   
Sbjct: 312 FESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVGGFAK 371

Query: 249 ---------------------------------CKGGRVVRGHELFREMKENGI------ 269
                                            C+   + +   L REM+E GI      
Sbjct: 372 IADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACNMTQAEALVREMEEEGIDAPIDI 431

Query: 270 -------------------LIDR----------AIYGVLIEGLVGEGKVGKACDLLKDLV 300
                              + DR            YG LI   +  GKV KA ++ K + 
Sbjct: 432 YHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMME 491

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +G + ++  Y+ +I G  R+K +  A+ +FE  V+D L PD    N ++     MG MD
Sbjct: 492 VAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMD 551

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
              + + +M+K +         F   + G  +   +  AL++F+ ++  G   +V  +N 
Sbjct: 552 RAIRTVKEMQKERHRPTT--RTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNA 609

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L+E  +++KA+ +  +M    +  N  +++  +  +   GD  +A E   K+    
Sbjct: 610 LILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEG 669

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
               V  Y  L K  CK G + +A+ + R+         T F Y + I    R G+  + 
Sbjct: 670 LELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNT-FVYNILIDGWARRGDVWEA 728

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            E++ +M QEG  P+    ++ I+  CK G ++ A K    +
Sbjct: 729 AELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEM 770



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 146/347 (42%), Gaps = 17/347 (4%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G KHN  +Y+ L      N   R  D            A    + E + ++  KPDV  Y
Sbjct: 494 GIKHNMKTYSMLI-----NGFVRLKDW-----------ANAFAVFEDVVKDGLKPDVVLY 537

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +IR      N+D  +R  +EM+K+        ++ +I G  + G + R  E+F  M+ 
Sbjct: 538 NNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRW 597

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           +G +     +  LI GLV + ++ KA ++L ++  +G   +   Y +I+ G   +    K
Sbjct: 598 SGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGK 657

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A++ F     + L  D  T   LL  C + GRM +   +  +M   K      +      
Sbjct: 658 AFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILID 717

Query: 387 LVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
              +   +  A ++ +++K +G    +  Y   + A  + G++++A     +M  + ++ 
Sbjct: 718 GWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKP 777

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
           N  +++  I     +    +A +C  ++      P  A Y+CL   L
Sbjct: 778 NIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSL 824



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/391 (20%), Positives = 159/391 (40%), Gaps = 37/391 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++++ LE+ + M     K ++  Y+ +I      ++      V+E++ KD ++ DV+ Y
Sbjct: 478 GKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLY 537

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I   C  G + R     +EM++         +  +I G    G + +A ++   +  
Sbjct: 538 NNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRW 597

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           SG    +  +N++I GL    Q +KA ++ +      ++P+  T   ++   A +G    
Sbjct: 598 SGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLG---- 653

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
                            D  K FE+              F +LK +G    V  Y  L+ 
Sbjct: 654 -----------------DTGKAFEY--------------FTKLKTEGLELDVYTYEALLK 682

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           A  + G ++ AL +  +M    +  N+  ++I I      GD+ EA E   ++ +    P
Sbjct: 683 ACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQP 742

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            +  Y       CK G++  A   +++ +  V   P    Y   I    R+   EK ++ 
Sbjct: 743 DIHTYTSFINACCKAGDMQRATKTIQE-MEVVGVKPNIKTYTTLIHGWARASLPEKALKC 801

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
             EM   G  P++ +   +++ +    ++ E
Sbjct: 802 FQEMKSAGLKPDKAVYHCLMTSLLSRASVAE 832



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 94/431 (21%), Positives = 170/431 (39%), Gaps = 45/431 (10%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           KP    +  M+   A   ++      +E M+   +E     Y +LI     G  +     
Sbjct: 286 KPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALS 345

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
             R+MKE GI +    Y +L+ G         A    K+  +     +  IY +II   C
Sbjct: 346 CVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHC 405

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +     +A  L     ++ +       + +         MD +                 
Sbjct: 406 QACNMTQAEALVREMEEEGIDAPIDIYHTM---------MDGY----------------- 439

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
                  ++G EE+ ++   VF+ LK  G++ SV  Y  L+   ++IG+V KAL +   M
Sbjct: 440 ------TIIGNEEKCLI---VFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMM 490

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
               ++ N  ++S+ I   V   D   A      +++    P V  YN + +  C +G +
Sbjct: 491 EVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNM 550

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D A+  V++ +      PT   +   I    RSG+  + +E+ + M   GC P     +A
Sbjct: 551 DRAIRTVKE-MQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNA 609

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGL 618
           +I G+ +   +E+A ++   +    +    N   Y  I+  +     A L  +G K F  
Sbjct: 610 LILGLVEKCQMEKAVEILDEMSLAGI--SPNEHTYTTIMHGY-----ASLGDTG-KAFEY 661

Query: 619 ESKLKAKGCKL 629
            +KLK +G +L
Sbjct: 662 FTKLKTEGLEL 672



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/229 (19%), Positives = 99/229 (43%), Gaps = 28/229 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-------------------GRI 184
           K +G + +  +Y AL     ++   ++A  V   M SQ                   G +
Sbjct: 666 KTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDV 725

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E  E++++M++   +PD+  YT+ I       ++    +  +EM+   V+ ++  Y TL
Sbjct: 726 WEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTL 785

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK------ACDLLKD 298
           I G  +     +  + F+EMK  G+  D+A+Y  L+  L+    V +         + ++
Sbjct: 786 IHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSLLSRASVAEEYIYSGVVGICRE 845

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347
           +++     D+G   ++    C +++ ++        +Q    PD+++ N
Sbjct: 846 MIECELTVDMG--TAVHWSKC-LRKIERTGGELTEALQKTFPPDWNSYN 891


>gi|356497979|ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 595

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 193/443 (43%), Gaps = 30/443 (6%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G K N  ++N +  CL R N       V  LM   G                 +P +  +
Sbjct: 108 GVKPNVPTHNIVINCLCRLNHTVFGFSVLGLMFKIG----------------VEPSIVTF 151

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           T ++  L  E N+   +R  + +K    E+D      +I GLCK G         ++M+E
Sbjct: 152 TTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEE 211

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
               +D   Y  +++GL  +G V +A DL   +   G + DL  YN +I GLC   ++ +
Sbjct: 212 QNCNLDVTAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKE 271

Query: 327 AYKLFEVTVQDDLAPDFSTVNPL---LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           A  L    ++  + PD  T N +    +    + R  + F  +  M      +  D+   
Sbjct: 272 AAPLLANMMRKGIMPDVQTFNVIGGRFLKTGMISRAKSIFSFMGHM-----GIEHDVVT- 325

Query: 384 FEFLVGKE---ERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
           +  ++G      ++  A++VF+ +  KG   ++  Y  L+    EI  + KA+Y  G+M 
Sbjct: 326 YSSIIGVHCMLNQMKDAMEVFDLMIRKGCLPNIVTYTSLIHGWCEIKNMNKAMYFLGEMV 385

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              L+ N ++++  I    ++G  + A E    + +  Q+P +     +  GL K     
Sbjct: 386 NNGLDPNIVTWNTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHS 445

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            AM L R+ L  + S      Y++ +  +C SG+    +E+ + ++ +G   + V  + +
Sbjct: 446 EAMSLFRE-LEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIM 504

Query: 560 ISGMCKHGTLEEARKVFTNLRER 582
           I+G+CK G L++A  +   + E 
Sbjct: 505 INGLCKEGLLDDAEDLLMKMEEN 527



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 92/413 (22%), Positives = 176/413 (42%), Gaps = 8/413 (1%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L+   KM      P V  +  +  ++A  ++    + + + M    V+ +V  +  +I  
Sbjct: 63  LDFYHKMVTMKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVPTHNIVINC 122

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC+    V G  +   M + G+      +  ++ GL  EG V +A   +  L D GY +D
Sbjct: 123 LCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESD 182

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
                +II GLC+V     A    +   + +   D +  N ++    + G +   + L +
Sbjct: 183 RYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYNAVVDGLCKDGMVFEAWDLFS 242

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLE 424
           QM      +  DL  +   + G    +R   A  +   +  KG    V  +N++ G  L+
Sbjct: 243 QMTGK--GIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIGGRFLK 300

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G + +A  +F  M  + +E + +++S  I  H     + +A E  + +I    +P++  
Sbjct: 301 TGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEVFDLMIRKGCLPNIVT 360

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y  L  G C+I  ++ AM  + + + N    P    +   I   C++G+     E+   M
Sbjct: 361 YTSLIHGWCEIKNMNKAMYFLGEMVNN-GLDPNIVTWNTLIGGFCKAGKPVAAKELFFVM 419

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            + G  P+   C+ I+ G+ K     EA  +F  L   K+ ++ + I+Y  IL
Sbjct: 420 HKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFREL--EKMNSDLDIIIYSIIL 470



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 144/361 (39%), Gaps = 46/361 (12%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G  +  L  L+KM    C  DV AY A++  L  +  +     ++ +M    ++ D+  Y
Sbjct: 197 GHSSAALSYLKKMEEQNCNLDVTAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTY 256

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GLC   R      L   M   GI+ D   + V+    +  G + +A  +   +  
Sbjct: 257 NCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIGGRFLKTGMISRAKSIFSFMGH 316

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  Y+SIIG  C + Q   A ++F++ ++    P+  T   L+    E+  M+ 
Sbjct: 317 MGIEHDVVTYSSIIGVHCMLNQMKDAMEVFDLMIRKGCLPNIVTYTSLIHGWCEIKNMNK 376

Query: 362 FFKLLAQM----------------------------EKLKF------------SVAADLE 381
               L +M                            ++L F            + A  L+
Sbjct: 377 AMYFLGEMVNNGLDPNIVTWNTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILD 436

Query: 382 KFFEFLVGKEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
             F+     E     A+ +F EL K      + IY+I++  +   G++  AL LF  +  
Sbjct: 437 GLFKCHFHSE-----AMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSS 491

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             ++++ ++++I I    + G + +A +   K+ E    P    YN   +GL +  EI  
Sbjct: 492 KGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISK 551

Query: 501 A 501
           +
Sbjct: 552 S 552



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
           LEKM  +L   D+  Y+ ++  + +   L+  L ++  +    V+ DV+ Y  +I GLCK
Sbjct: 454 LEKMNSDL---DIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCK 510

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
            G +    +L  +M+ENG   D   Y V ++GL+   ++ K+   L  +   G+RA+   
Sbjct: 511 EGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRANATT 570

Query: 311 YNSIIGGLCRVKQFDKAYKLF 331
              +I      K+ ++A+++F
Sbjct: 571 TKLLINYFSANKE-NRAFQVF 590



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 3/107 (2%)

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
            R  E+M  DL   D++ Y  ++ G+C  G++    ELF  +   G+ ID   Y ++I G
Sbjct: 451 FRELEKMNSDL---DIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMING 507

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
           L  EG +  A DLL  + ++G   D   YN  + GL R  +  K+ K
Sbjct: 508 LCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTK 554


>gi|242039913|ref|XP_002467351.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
 gi|241921205|gb|EER94349.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
          Length = 846

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/486 (20%), Positives = 202/486 (41%), Gaps = 54/486 (11%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIA-------------------E 186
           +G + + A++NA+        L R A  +  +M   G +                    +
Sbjct: 213 RGPRPSLATFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVCSYNILIKGHCVFGWSRD 272

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
             ++ E+M R+ C+P V  Y  ++ VL  E  +    R+++EM +  ++A+ + +  LI 
Sbjct: 273 AFKLFEEMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQANTITFNVLID 332

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG------------------------ 282
           G  K GR+ +    +REMK  G++ D   + ++  G                        
Sbjct: 333 GYAKTGRMDQACAAYREMKARGLVPDSCTFNIIAAGAYKFGHAAQLVHDHDMFGSHMLAD 392

Query: 283 --------LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
                   L  + ++  A +LL+  ++ G    +  +N++I    +    ++A++L+ + 
Sbjct: 393 GMDMLVCRLCWDCRLDDAWELLRGAIEQGAPLSVTGFNALIAAYSKEGLHEEAFELYRIM 452

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI 394
            +  LAP  ST N L++     GR+D    LL  M    + ++       +    +E   
Sbjct: 453 NKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLSTSFTICLDASF-REGNA 511

Query: 395 MMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
           + AL  ++++   G     I ++  +  L  +  V +A   F +M    +  N+ +++  
Sbjct: 512 VCALKCWDDMGKLGLQPDFIAFSAYINGLCRLDYVNEAYQAFAEMTARGIVPNNFTYNSI 571

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
           I     +G++ EA +    + +   VP +   N L  GLC+ G+++    L+ D   N  
Sbjct: 572 ISALCRAGNMTEALKLQQNMRQNGLVPDIYTSNILIDGLCREGKLEMVDNLLLDMCSNGL 631

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
           + P    Y   I   CR+ +    +  +N+M   GC P+    +  +  +C +  L +A 
Sbjct: 632 T-PDTVTYNTIINAYCRAKDMNSAMNFMNKMLAAGCEPDIFTYNIWMHSLCSNHMLNQAG 690

Query: 574 KVFTNL 579
           KV   L
Sbjct: 691 KVLDEL 696



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 111/458 (24%), Positives = 192/458 (41%), Gaps = 38/458 (8%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           + G  AE L++L ++RR+   P + A  A++R+L     + A   V+EEM        + 
Sbjct: 161 AAGMAAEALDVLTRVRRSGKTPSLSALAALLRLLFRSGEVHAAWNVFEEMAARGPRPSLA 220

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            +  +I+G C  G V     L   M E GI+ +   Y +LI+G    G    A  L +++
Sbjct: 221 TFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVCSYNILIKGHCVFGWSRDAFKLFEEM 280

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
             SG    +  YN ++  LC   +  +A +LF+   Q  +  +  T N L+   A+ GRM
Sbjct: 281 HRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQANTITFNVLIDGYAKTGRM 340

Query: 360 DNFFKLLAQMEK-----------------LKFSVAA----DLEKFFEFLVGKEERIMMAL 398
           D       +M+                   KF  AA    D + F   ++     +++  
Sbjct: 341 DQACAAYREMKARGLVPDSCTFNIIAAGAYKFGHAAQLVHDHDMFGSHMLADGMDMLVCR 400

Query: 399 --------DVFEELKGKGYSSVPI----YNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
                   D +E L+G      P+    +N L+ A  + G  ++A  L+  M  L L  +
Sbjct: 401 LCWDCRLDDAWELLRGAIEQGAPLSVTGFNALIAAYSKEGLHEEAFELYRIMNKLGLAPS 460

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           S +F+  I      G + EA      ++      S +   CL     + G    A+    
Sbjct: 461 SSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLSTSFTICLDASF-REGNAVCALKCWD 519

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
           D +G +   P    ++  I  +CR     +  +   EMT  G  PN    ++IIS +C+ 
Sbjct: 520 D-MGKLGLQPDFIAFSAYINGLCRLDYVNEAYQAFAEMTARGIVPNNFTYNSIISALCRA 578

Query: 567 GTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
           G + EA K+  N+R+  L+ +   I    ILI+ + ++
Sbjct: 579 GNMTEALKLQQNMRQNGLVPD---IYTSNILIDGLCRE 613



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 124/286 (43%), Gaps = 9/286 (3%)

Query: 180 SQGRIAEMLEILEKM-RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           +QGR+ E   +LE M  +  C    F  T  +     E N    L+ W++M K  ++ D 
Sbjct: 473 NQGRLDEAQLLLEHMVSKGYCLSTSF--TICLDASFREGNAVCALKCWDDMGKLGLQPDF 530

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           +A+   I GLC+   V   ++ F EM   GI+ +   Y  +I  L   G + +A  L ++
Sbjct: 531 IAFSAYINGLCRLDYVNEAYQAFAEMTARGIVPNNFTYNSIISALCRAGNMTEALKLQQN 590

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +  +G   D+   N +I GLCR  + +    L      + L PD  T N ++        
Sbjct: 591 MRQNGLVPDIYTSNILIDGLCREGKLEMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAKD 650

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYSSVPI-Y 415
           M++    + +M  L      D+  +  ++  +     +  A  V +EL   G     + Y
Sbjct: 651 MNSAMNFMNKM--LAAGCEPDIFTYNIWMHSLCSNHMLNQAGKVLDELVAMGCPPDSVTY 708

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           N LM  +     + +A+ L G++  +  + N+++ ++ +    + G
Sbjct: 709 NTLMDGICS-DVLDRAMILTGRLIKMAFQPNTITLNVFLSHFCKQG 753


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 175/407 (42%), Gaps = 13/407 (3%)

Query: 181  QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            +G + E  E++E MR +  K   F Y  +I  L A   +     +  EM+ + +   V+ 
Sbjct: 1169 KGDLEEAAELVEGMRLSK-KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVT 1227

Query: 241  YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
            Y  +I GL + G V      F EM+  G+L D   Y  L+ G    G + +A  L  DL 
Sbjct: 1228 YNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLR 1287

Query: 301  DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-----VCCAE 355
             +G    +  YN +I G CR+   ++A  L E   +    P+  T   L+     V    
Sbjct: 1288 RAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLA 1347

Query: 356  MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI- 414
            M R   FF  +          A +     E ++G    I  A ++ E L  +G SS  + 
Sbjct: 1348 MAR--EFFDEMLSKGLQPDCFAYNTRICAELILGD---IARAFELREVLMLEGISSDTVT 1402

Query: 415  YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
            YNIL+  L + G +K A  L  KM    L+ + ++++  I  H E G + EA +  N +I
Sbjct: 1403 YNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMI 1462

Query: 475  EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                +PS   +  +    C+ G + +A    R  L      P E  Y + I  +CR G  
Sbjct: 1463 SDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEE-GVEPNEITYNVLIHALCRMGRT 1521

Query: 535  EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            +      +EM + G   N+   + +I G CK G  E+A + +  + +
Sbjct: 1522 QLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQ 1568



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 188/428 (43%), Gaps = 20/428 (4%)

Query: 177  LMDS---QGRIAEMLEILEKM--RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK 231
            L+DS   +GR  ++  +L++M  R + C P+   Y  +I  L  + +L+    + E M+ 
Sbjct: 1125 LLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRL 1184

Query: 232  DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
               +A    Y  LI GL   G V + ++L  EM+  GI+     Y  +I GL+  G V  
Sbjct: 1185 S-KKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEA 1243

Query: 292  ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
            A     ++   G   D+  YNS++ G C+     +A  LF    +  LAP   T N L+ 
Sbjct: 1244 AQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILID 1303

Query: 352  CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGY 409
                +G ++    L  +M +       ++  +   + G      + MA + F+E+  KG 
Sbjct: 1304 GYCRLGDLEEARILKEEMGEQ--GCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGL 1361

Query: 410  S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468
                  YN  + A L +G++ +A  L   +    +  ++++++I I    ++G++ +A E
Sbjct: 1362 QPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKE 1421

Query: 469  CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTI 525
               K++     P    Y CL    C+ G +  A    R    N+ S    P+   + + I
Sbjct: 1422 LQMKMVSNGLQPDCITYTCLIHAHCERGLLREA----RKIFNNMISDGLLPSAVTFTVII 1477

Query: 526  LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
               CR G          +M +EG  PNE+  + +I  +C+ G  + A   F  + ER L+
Sbjct: 1478 HAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLV 1537

Query: 586  TEANTIVY 593
              AN   Y
Sbjct: 1538 --ANKYTY 1543



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 177/441 (40%), Gaps = 71/441 (16%)

Query: 188  LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            L    +M  +   PDV     ++RVL      D    V EEM +  +E  ++ Y TL+  
Sbjct: 1069 LSAFREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDS 1128

Query: 248  LCKGGRVVRGHELFREM--KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              K GR  +   L +EM  + +G L +   Y V+I GL  +G + +A +L++ +  S  +
Sbjct: 1129 FLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSK-K 1187

Query: 306  ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            A    YN +I GL       K Y L      + + P   T N ++    + G        
Sbjct: 1188 ASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSG-------- 1239

Query: 366  LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEI 425
            L +  ++KF+               E R M  L             V  YN L+    + 
Sbjct: 1240 LVEAAQVKFA---------------EMRAMGLL-----------PDVITYNSLLNGYCKA 1273

Query: 426  GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
            G +K+AL LFG +R   L    L+++I I  +   GD+ EA     ++ E   +P+V  Y
Sbjct: 1274 GNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTY 1333

Query: 486  NCLTKGLCKIGEIDAAM-----MLVR----DC------------LGNVASG--------- 515
              L KG   +  +  A      ML +    DC            LG++A           
Sbjct: 1334 TILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLML 1393

Query: 516  ----PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
                     Y + I  +C++G  +   E+  +M   G  P+ +  + +I   C+ G L E
Sbjct: 1394 EGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLRE 1453

Query: 572  ARKVFTNLRERKLLTEANTIV 592
            ARK+F N+    LL  A T  
Sbjct: 1454 ARKIFNNMISDGLLPSAVTFT 1474



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 122/319 (38%), Gaps = 37/319 (11%)

Query: 177  LMDSQGRIAEMLE---ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
            L+D   R+ ++ E   + E+M    C P+V  YT +++     R+L      ++EM    
Sbjct: 1301 LIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKG 1360

Query: 234  VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
            ++ D  AY T I      G + R  EL   +   GI  D   Y +LI GL   G +  A 
Sbjct: 1361 LQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAK 1420

Query: 294  DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            +L   +V +G + D   Y  +I   C      +A K+F   + D L P   T   ++   
Sbjct: 1421 ELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAY 1480

Query: 354  AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
               G +              +S      K  E  V   E                     
Sbjct: 1481 CRRGNL--------------YSAYGWFRKMLEEGVEPNE--------------------I 1506

Query: 414  IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
             YN+L+ AL  +G  + A + F +M    L  N  ++++ I  + + G+  +A   + ++
Sbjct: 1507 TYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEM 1566

Query: 474  IEMSQVPSVAAYNCLTKGL 492
             +    P    +  L KG 
Sbjct: 1567 HQNGIHPDYLTHKALLKGF 1585


>gi|358347154|ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503561|gb|AES84764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 989

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 112/462 (24%), Positives = 209/462 (45%), Gaps = 49/462 (10%)

Query: 149 KHNFASYNAL--AYCLSRNNLFRAADQVPELM---DSQGRIAEMLEILEKMRRNLCKPDV 203
           K +  +YN L  A+C    +L RA     E++     + R+     + +   +NL +P +
Sbjct: 264 KIDIVTYNTLLKAFC-KTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNL-QPTL 321

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT +I        ++    ++++M  + +  DV+   +++ G C+ G++     LFRE
Sbjct: 322 VTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFRE 381

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M E G+  +   Y  +I  L   G+V +A +L   +V  G   D+    +++ GL +V +
Sbjct: 382 MYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGK 441

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
             +A ++FE  ++ +LAP+  T + LL    ++G+M+    +L +MEK    V  ++  F
Sbjct: 442 TKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEH--VPPNVITF 499

Query: 384 FEFLVGKEERIMM--ALDVFEELKGK--------------GY------------------ 409
              + G  ++ M+  A+DV  E+  +              GY                  
Sbjct: 500 SSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKS 559

Query: 410 ----SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
                S  I++IL+  L  +G + +A  L   M    ++ + ++++  I  + + G+ L 
Sbjct: 560 RRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLA 619

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A     ++ E +    V AYN L KGL ++G+ D   +  R  +  +   P    Y   I
Sbjct: 620 ALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSR--MIELGLAPDCITYNTII 677

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
              C  G+ E  +++LNEM   G  PN V  + +I G+CK G
Sbjct: 678 NTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTG 719



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 192/434 (44%), Gaps = 37/434 (8%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PDVF+   ++  L    +LD  L        D+V+ D + Y T+I G C+ G V +G  L
Sbjct: 127 PDVFSVNVLVHSLCKVGDLDLALGYLRN--NDVVDIDNVTYNTVIWGFCQKGLVDQGFGL 184

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             EM + G+  D     +L++G    G V  A  ++ +LVD G   D+   N++I G C 
Sbjct: 185 LSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCE 244

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-------EKLK 373
                +A +L E + + D+  D  T N LL    + G +     L  ++       ++LK
Sbjct: 245 AVLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLK 304

Query: 374 -----------------FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY--SSVPI 414
                             +    +  + +F VG EE    +  +++++   G     V  
Sbjct: 305 NNDVVTQNEIKNLQPTLVTYTTLIAAYCKF-VGVEE----SHSLYKKMIMNGIMPDVVTC 359

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
            +IL G     G++ +A  LF +M  + L+ N +S++  I    +SG ++EA    ++++
Sbjct: 360 SSILYG-FCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMV 418

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
                  +     +  GL K+G+   A  +    L  +   P    Y+  +   C+ G+ 
Sbjct: 419 VRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETIL-KLNLAPNCVTYSALLDGYCKLGKM 477

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           E    VL +M +E  PPN +  S+II+G  K G L +A  V   + +R ++   NTIVY 
Sbjct: 478 ELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVM--PNTIVYA 535

Query: 595 EILIEHMKKKTADL 608
            ++  + K    D+
Sbjct: 536 ILIDGYFKAGEQDV 549



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 170/416 (40%), Gaps = 71/416 (17%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  E  E+ E + +    P+   Y+A++        ++    V ++M+K+ V  +V+ +
Sbjct: 440 GKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITF 499

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            ++I G  K G + +  ++ REM +  ++ +  +Y +LI+G    G+   A D  K++  
Sbjct: 500 SSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKS 559

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                   I++ ++  L RV + D+A  L        + PD      L+         D 
Sbjct: 560 RRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLI---------DG 610

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
           +FK                          E   + AL + +E+K K     V  YN L+ 
Sbjct: 611 YFK--------------------------EGNQLAALSIVQEMKEKNIRFDVVAYNALIK 644

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            LL +G+     Y+  +M  L L  + ++++  I  +   G   +A +  N++     +P
Sbjct: 645 GLLRLGKYDPR-YVCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMP 703

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE- 539
           +   YN L  GLCK G +                 PT   +   +    RS +A+KI++ 
Sbjct: 704 NAVTYNILIGGLCKTGFV-----------------PTPITHKFLVKAYSRSEKADKILQI 746

Query: 540 ----------------VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
                           VL+EM + G   + V  +A+I G C    +E+A K ++ +
Sbjct: 747 HEKLVASGLELKRQKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQM 802



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 150/359 (41%), Gaps = 30/359 (8%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E   ++  M      PD+  Y ++I     E N  A L + +EMK+  +  DV+AY
Sbjct: 580 GRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAY 639

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GL + G+    +   R M E G+  D   Y  +I     +GK   A D+L ++  
Sbjct: 640 NALIKGLLRLGKYDPRYVCSR-MIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKS 698

Query: 302 SGYRADLGIYNSIIGGLCRV---------KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
            G   +   YN +IGGLC+          K   KAY       + + A     ++  LV 
Sbjct: 699 YGIMPNAVTYNILIGGLCKTGFVPTPITHKFLVKAYS------RSEKADKILQIHEKLVA 752

Query: 353 CA-EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY 409
              E+ R           E +K  ++ADL  +   + G      +  AL  + ++   G 
Sbjct: 753 SGLELKRQKVVLD-----EMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGI 807

Query: 410 S-SVPIYNILMGALLEIG----EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
           + ++  YN L+G L   G     +++   L  +M    L  N+ ++ I +  +   G+  
Sbjct: 808 APNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRK 867

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
           +    H ++I    VP++  YN L     K G++  A  L+ D L      P  F Y +
Sbjct: 868 KTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTK-GRIPNSFTYDI 925



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 5/146 (3%)

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVE-SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           F  MR L L V +L F   +      SG + +    ++ ++    VP V + N L   LC
Sbjct: 82  FSHMRALGL-VPTLPFWNTLLYQFNASGLVSQVKLMYSDMLFCGVVPDVFSVNVLVHSLC 140

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           K+G++D A+  +R+   N         Y   I   C+ G  ++   +L+EM + G   + 
Sbjct: 141 KVGDLDLALGYLRN---NDVVDIDNVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDS 197

Query: 554 VICSAIISGMCKHGTLEEARKVFTNL 579
           + C+ ++ G C+ G ++ A  V  NL
Sbjct: 198 ITCNILVKGYCRIGLVQYAEWVMYNL 223


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 183/438 (41%), Gaps = 41/438 (9%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER--NLDACLRVWEEMKKDLVEADVMAYV 242
            E LE  E M +     D    + ++ +LA  R   +D+CLR +  M    VE  V +  
Sbjct: 172 GEALEAFEHMEKKGFHID--ERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLT 229

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++ GLCK G V  G +L  E+   G+  +   Y   IEG      +G   ++L  +   
Sbjct: 230 IVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKE 289

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   ++  Y  +I G   + + ++A +LFE   +  +  D      ++ C    G +   
Sbjct: 290 GVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRA 349

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYNILMGA 421
             L  +M       +A         V K  ++  A  +  E++GKG    P I+N L+  
Sbjct: 350 LVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDG 409

Query: 422 LLEIGEVKKALYLFGKM--RGLNLEV---------------------------------N 446
             E G V +AL L   M  +GL  +V                                 N
Sbjct: 410 YCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPN 469

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           ++SF+  I  + + G+ +EA     ++ E   VP++  YN L  G  K G +  A  L +
Sbjct: 470 TMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKL-K 528

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
           D L N    P  +     I   C  G+ +  +++ +EM Q G  PN V  +A+ISG+ K 
Sbjct: 529 DELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKD 588

Query: 567 GTLEEARKVFTNLRERKL 584
           G  EEA K++  ++E  L
Sbjct: 589 GRSEEAFKLYDEMKETGL 606



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 173/388 (44%), Gaps = 6/388 (1%)

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           +  + RV A  +     L  +E M+K     D  + +  ++ L +GG+V      FR M 
Sbjct: 158 FDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMV 217

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
              + +      ++++GL   G V     L+ ++   G +A++  YN+ I G  +     
Sbjct: 218 NLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLG 277

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
              ++  +  ++ +A +  T   L+   + +G+++   +L  +M +    + AD+  +  
Sbjct: 278 GVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREK--GIEADVYVYTS 335

Query: 386 FLV--GKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            +    +   +  AL +F+E+  KG   S   Y  L+  + + G+++ A  L  +M+G  
Sbjct: 336 IISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKG 395

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           +++N + F+  I  + ESG + EA      + +      V AYN +  GLCK+   D A 
Sbjct: 396 IDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAK 455

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            L+   +    S P    +   I   C+ G   +   V  EM ++G  PN +  + +I G
Sbjct: 456 GLLFSMVERGVS-PNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDG 514

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANT 590
             K G ++EA K+   L  R L+ +  T
Sbjct: 515 YSKRGNMKEAHKLKDELENRGLIPDVYT 542



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/437 (21%), Positives = 173/437 (39%), Gaps = 89/437 (20%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAE 186
           KG K N  +YNA      +        ++  LM+ +G                   +I E
Sbjct: 254 KGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEE 313

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
              + E+MR    + DV+ YT++I       N+   L +++EM    +      Y  LI 
Sbjct: 314 AQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIH 373

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           G+CK G++     L  EM+  GI ++  I+  LI+G    G V +A  L   +   G  +
Sbjct: 374 GVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLES 433

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D+  YNSI  GLC++ + D+A  L    V+  ++P+                        
Sbjct: 434 DVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPN------------------------ 469

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIG 426
                + F+   D       +  KE   + A  VF E++ KG  +VP             
Sbjct: 470 ----TMSFTTLID-------IYCKEGNFVEAKRVFREMEEKG--NVP------------- 503

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
                              N +++++ I  + + G++ EA +  +++     +P V    
Sbjct: 504 -------------------NIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCT 544

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L  G C  G++D A+ L  D +      P    Y   I  + + G +E+  ++ +EM +
Sbjct: 545 SLIHGECIDGKVDMALKLF-DEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKE 603

Query: 547 EGCPPNEVICSAIISGM 563
            G  P++ + S+++  +
Sbjct: 604 TGLTPDDTVYSSLVGSL 620


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 162/331 (48%), Gaps = 12/331 (3%)

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           +FRE  E G+  + A Y ++I  +   G++ +A  LL  +   GY  D+  Y++++ G C
Sbjct: 233 VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYC 292

Query: 320 RVKQFDKAYKLFEVTVQDDLAPD---FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           R  + DK +KL EV  +  L P+   + ++  LL    ++   +  F      E ++  +
Sbjct: 293 RFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFS-----EMIRQGI 347

Query: 377 AADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALY 433
             D   +   + G  K   I  A   F E+  +  +  V  Y  ++    +IG++ +A  
Sbjct: 348 LPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGK 407

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           LF +M    LE +S++F+  I  + ++G + +A   HN +I+    P+V  Y  L  GLC
Sbjct: 408 LFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 467

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           K G++D+A  L+ + +  +   P  F Y   +  +C+SG  E+ ++++ E    G   + 
Sbjct: 468 KEGDLDSANELLHE-MWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT 526

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           V  + ++   CK G +++A+++   +  + L
Sbjct: 527 VTYTTLMDAYCKSGEMDKAQEILKEMLGKGL 557



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/426 (21%), Positives = 185/426 (43%), Gaps = 8/426 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI E   +L  M      PDV +Y+ ++        LD   ++ E MK+  ++ +   Y
Sbjct: 260 GRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIY 319

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            ++I  LC+  ++    E F EM   GIL D  +Y  LI+G    G +  A     ++  
Sbjct: 320 GSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS 379

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                D+  Y +II G C++    +A KLF       L PD  T   L+    + G M +
Sbjct: 380 RDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKD 439

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
            F++   M  ++   + ++  +   + G  KE  +  A ++  E+   G   ++  YN +
Sbjct: 440 AFRVHNHM--IQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSI 497

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L + G +++A+ L G+     L  ++++++  +  + +SG++ +A E   +++    
Sbjct: 498 VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL 557

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P++  +N L  G C  G ++    L+   L      P    +   +   C     +   
Sbjct: 558 QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK-GIAPNATTFNSLVKQYCIRNNLKAAT 616

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
            +  +M   G  P+      ++ G CK   ++EA  +F  ++ +      +T  Y  ++ 
Sbjct: 617 AIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVST--YSVLIK 674

Query: 599 EHMKKK 604
             +K+K
Sbjct: 675 GFLKRK 680



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 110/486 (22%), Positives = 204/486 (41%), Gaps = 27/486 (5%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG----------------RIAEM--- 187
           G   N ASYN + + + +    + A  +  LM+ +G                R  E+   
Sbjct: 241 GVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKV 300

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            +++E M+R   KP+ + Y ++I +L     L      + EM +  +  D + Y TLI G
Sbjct: 301 WKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDG 360

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            CK G +    + F EM    I  D   Y  +I G    G + +A  L  ++   G   D
Sbjct: 361 FCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPD 420

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
              +  +I G C+      A+++    +Q   +P+  T   L+    + G +D+  +LL 
Sbjct: 421 SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 480

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLE 424
           +M K+   +  ++  +   + G  K   I  A+ +  E +  G ++  + Y  LM A  +
Sbjct: 481 EMWKI--GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 538

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            GE+ KA  +  +M G  L+   ++F++ +      G + +  +  N ++     P+   
Sbjct: 539 SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 598

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           +N L K  C    + AA  + +D + +   GP    Y   +   C++   ++   +  EM
Sbjct: 599 FNSLVKQYCIRNNLKAATAIYKD-MCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEM 657

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
             +G   +    S +I G  K     EAR+VF  +R   L   A+  ++D       K K
Sbjct: 658 KGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGL--AADKEIFDFFSDTKYKGK 715

Query: 605 TADLVL 610
             D ++
Sbjct: 716 RPDTIV 721



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 106/517 (20%), Positives = 210/517 (40%), Gaps = 52/517 (10%)

Query: 108 VTELSKLRRVTP---------------DLVAEVLKVENNPTLASKFFHWAGKQKGYKHNF 152
           +T + KLRR  P                L+  ++K++ +  L   FF WA  ++      
Sbjct: 62  ITNVIKLRRAEPLRRSLKPYECKFKTDHLIWVLMKIKCDYRLVLDFFDWARSRR------ 115

Query: 153 ASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRV 212
              N  + C+    +   A    +L  +Q  I+   E     R  L   D F        
Sbjct: 116 -DSNLESLCI----VIHLAVASKDLKVAQSLISSFWE-----RPKLNVTDSFV------- 158

Query: 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
               +  D  +  +++   D    DV   V +  GL +  R V     F +M   G+++ 
Sbjct: 159 ----QFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRV-----FEKMLNYGLVLS 209

Query: 273 RAIYGVLIEGLVGEG-KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
                V +  L  +  K   A  + ++  + G   ++  YN +I  +C++ +  +A+ L 
Sbjct: 210 VDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLL 269

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE 391
            +       PD  + + ++      G +D  +KL+  M++      + +      L+ + 
Sbjct: 270 LLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRI 329

Query: 392 ERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
            ++  A + F E+  +G      +Y  L+    + G+++ A   F +M   ++  + L++
Sbjct: 330 CKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTY 389

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +  I    + GD++EA +  +++      P    +  L  G CK G +  A   V + + 
Sbjct: 390 TAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFR-VHNHMI 448

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
                P    Y   I  +C+ G+ +   E+L+EM + G  PN    ++I++G+CK G +E
Sbjct: 449 QAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIE 508

Query: 571 EARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           EA K+        L   A+T+ Y  ++  + K    D
Sbjct: 509 EAVKLVGEFEAAGL--NADTVTYTTLMDAYCKSGEMD 543


>gi|224141281|ref|XP_002324003.1| predicted protein [Populus trichocarpa]
 gi|222867005|gb|EEF04136.1| predicted protein [Populus trichocarpa]
          Length = 626

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 169/367 (46%), Gaps = 2/367 (0%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+ + +  +  +   + ++D      E+M+++  E D++ Y TLI G C  GR+     L
Sbjct: 250 PNSYTFNILTHLFCKDGDIDKMNDFLEKMEEEGFEPDIVTYNTLINGYCGRGRLSDAFYL 309

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           +R M    +L D   Y  L+ GL  EG+V +A  LL  +V  G   D+  YN++I G C+
Sbjct: 310 YRIMYRRCVLPDLVSYTALMNGLCKEGRVREAHQLLHRMVHRGLNPDVVSYNTLICGYCK 369

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             +  ++  L    + + + PD  T   L+    + G + +   L+ ++EK   S++ D+
Sbjct: 370 EGKMLESKSLLYEMIGNGIFPDSFTCRVLIQGYRKEGWLISALNLVVELEKFGVSISPDI 429

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMR 439
             +    + +E+R   A  + E +  +GY   V IYN L+ +L +   V  AL L  ++ 
Sbjct: 430 YDYLVASLCEEDRPFAAKTLLERMSQRGYIPHVEIYNKLIESLCKGDCVADALSLKAEIV 489

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
             N+  N L++   I+C    G  +EA +   +++     P       +  G C+  +  
Sbjct: 490 VGNINPNLLTYKALIRCLCRMGRSIEAEKLMEEMLHFGLQPDPEICRAMIHGYCREKDAG 549

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A  L+           +E  Y+  +  VC  G+  K +E+   M + G  PN + C  +
Sbjct: 550 KAESLLVLFAKEFQIFDSE-SYSTLVRIVCEDGDVAKFMELQERMLKVGFAPNSLTCKYM 608

Query: 560 ISGMCKH 566
           I G+ K+
Sbjct: 609 IDGLRKN 615



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 139/352 (39%), Gaps = 72/352 (20%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           +++G++ +  +YN L   YC                   +GR+++   +   M R    P
Sbjct: 279 EEEGFEPDIVTYNTLINGYC------------------GRGRLSDAFYLYRIMYRRCVLP 320

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           D+ +YTA++  L  E  +    ++   M    +  DV++Y TLI G CK G+++    L 
Sbjct: 321 DLVSYTALMNGLCKEGRVREAHQLLHRMVHRGLNPDVVSYNTLICGYCKEGKMLESKSLL 380

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGK--------------------------VGKACD- 294
            EM  NGI  D     VLI+G   EG                           V   C+ 
Sbjct: 381 YEMIGNGIFPDSFTCRVLIQGYRKEGWLISALNLVVELEKFGVSISPDIYDYLVASLCEE 440

Query: 295 --------LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
                   LL+ +   GY   + IYN +I  LC+      A  L    V  ++ P+  T 
Sbjct: 441 DRPFAAKTLLERMSQRGYIPHVEIYNKLIESLCKGDCVADALSLKAEIVVGNINPNLLTY 500

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--------VGKEERIMMAL 398
             L+ C   MGR     KL+ +M  L F +  D E     +         GK E +++  
Sbjct: 501 KALIRCLCRMGRSIEAEKLMEEM--LHFGLQPDPEICRAMIHGYCREKDAGKAESLLVLF 558

Query: 399 -DVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
              F+    + YS+      L+  + E G+V K + L  +M  +    NSL+
Sbjct: 559 AKEFQIFDSESYST------LVRIVCEDGDVAKFMELQERMLKVGFAPNSLT 604



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 1/138 (0%)

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           F + ++ +V++G I E      +I+E+  VPSV A N L  GL K   I     +  + +
Sbjct: 185 FDLLLKAYVKAGMIKEGFRTFMQILEVGYVPSVIACNYLLNGLLKSNHIHLCWHVYGE-M 243

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
           G V   P  + + +     C+ G+ +K+ + L +M +EG  P+ V  + +I+G C  G L
Sbjct: 244 GRVGVIPNSYTFNILTHLFCKDGDIDKMNDFLEKMEEEGFEPDIVTYNTLINGYCGRGRL 303

Query: 570 EEARKVFTNLRERKLLTE 587
            +A  ++  +  R +L +
Sbjct: 304 SDAFYLYRIMYRRCVLPD 321



 Score = 42.4 bits (98), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 36/190 (18%), Positives = 83/190 (43%), Gaps = 3/190 (1%)

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           I+++L+ A ++ G +K+    F ++  +    + ++ +  +   ++S  I      + ++
Sbjct: 184 IFDLLLKAYVKAGMIKEGFRTFMQILEVGYVPSVIACNYLLNGLLKSNHIHLCWHVYGEM 243

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
             +  +P+   +N LT   CK G+ID     +   +      P    Y   I   C  G 
Sbjct: 244 GRVGVIPNSYTFNILTHLFCKDGDIDKMNDFLEK-MEEEGFEPDIVTYNTLINGYCGRGR 302

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
                 +   M +    P+ V  +A+++G+CK G + EA ++   +  R L    + + Y
Sbjct: 303 LSDAFYLYRIMYRRCVLPDLVSYTALMNGLCKEGRVREAHQLLHRMVHRGL--NPDVVSY 360

Query: 594 DEILIEHMKK 603
           + ++  + K+
Sbjct: 361 NTLICGYCKE 370


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 113/483 (23%), Positives = 210/483 (43%), Gaps = 40/483 (8%)

Query: 127 KVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDS---- 180
           K+EN  +  S       ++KG   +  +YN L  AYC  R  L   A    ELMDS    
Sbjct: 373 KIENTKSFLSDM-----EEKGVFPDVVTYNTLINAYC--RQGLLEEA---FELMDSMSGK 422

Query: 181 ------------------QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
                              G+      +L++M +    PD   Y  ++       N+   
Sbjct: 423 GLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDA 482

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
            R+++EM    V  D++++  LI  L K G + +  + FR+MK  G+  D  IY +LI G
Sbjct: 483 ERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGG 542

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
               G + +A  +  ++++ G   D+  YN+I+ GLC+ K   +A +LF    +  + PD
Sbjct: 543 FCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPD 602

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDV 400
           F T   L+    + G M+    L   M  ++ ++  D+  +   + G  K   +    ++
Sbjct: 603 FYTFTTLINGYXKDGNMNKAVTLFEMM--IQRNLKPDVVTYNTLIDGFCKGSEMEKVNEL 660

Query: 401 FEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           + ++  +  Y +   Y IL+     +G V +A  L+ +M     E   ++ +  ++ +  
Sbjct: 661 WNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCR 720

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           +G+ ++A E  + ++    VP    YN L  G  K   +D A  LV   + N    P   
Sbjct: 721 AGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNK-MENSGLLPDVI 779

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            Y + +    R G  ++   ++ +M + G  P+    +++I+G      L+EA +V   +
Sbjct: 780 TYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEM 839

Query: 580 RER 582
            +R
Sbjct: 840 LQR 842



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/446 (22%), Positives = 192/446 (43%), Gaps = 49/446 (10%)

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
           +D    +++E+ +  V+ +V     +I  LCK  ++        +M+E G+  D   Y  
Sbjct: 339 VDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNT 398

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           LI     +G + +A +L+  +   G +  +  YN+II GLC+  ++ +A  + +  ++  
Sbjct: 399 LINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIG 458

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF--LVGKEERIMM 396
           ++PD +T N LLV C     M +  ++  +M      V  DL  F     L+ K   +  
Sbjct: 459 MSPDTATYNILLVECCRNDNMMDAERIFDEMPSQ--GVVPDLVSFSALIGLLSKNGCLDQ 516

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEV-------N 446
           AL  F ++K  G +    IY IL+G     G + +AL +  +M  +G  L+V       N
Sbjct: 517 ALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILN 576

Query: 447 SL--------------------------SFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L                          +F+  I  + + G++ +A      +I+ +  P
Sbjct: 577 GLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKP 636

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  YN L  G CK  E++    L  D +      P    Y + I   C  G   +   +
Sbjct: 637 DVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIY-PNHISYGILINGYCNMGCVSEAFRL 695

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
            +EM ++G     + C+ I+ G C+ G   +A +  +N+  + ++ +   I Y+ ++   
Sbjct: 696 WDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDG--ITYNTLINGF 753

Query: 601 MKKKTADLVLSGLKFFGLESKLKAKG 626
           +K++  D      + F L +K++  G
Sbjct: 754 IKEENMD------RAFALVNKMENSG 773



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/442 (21%), Positives = 197/442 (44%), Gaps = 9/442 (2%)

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNL--CKPDVFA 205
           +KH+  S++A+ + L R+     A  V   M  +  ++  +EI+E +      C  +   
Sbjct: 232 FKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSR-VEIVESLVLTYGNCGSNPLV 290

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           +  ++R     R L      +  +K   +   + A  +L+ GL K G V    E+++E+ 
Sbjct: 291 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 350

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
            +G+ ++     ++I  L    K+      L D+ + G   D+  YN++I   CR    +
Sbjct: 351 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 410

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +A++L +      L P   T N ++    + G+      +L +M  LK  ++ D   +  
Sbjct: 411 EAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM--LKIGMSPDTATYNI 468

Query: 386 FLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            LV   + + +M A  +F+E+  +G    +  ++ L+G L + G + +AL  F  M+   
Sbjct: 469 LLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAG 528

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           L  +++ ++I I     +G + EA +  ++++E      V  YN +  GLCK   +  A 
Sbjct: 529 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEAD 588

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            L  + +      P  + +   I    + G   K + +   M Q    P+ V  + +I G
Sbjct: 589 ELFTE-MTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDG 647

Query: 563 MCKHGTLEEARKVFTNLRERKL 584
            CK   +E+  +++ ++  R++
Sbjct: 648 FCKGSEMEKVNELWNDMISRRI 669



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 162/391 (41%), Gaps = 59/391 (15%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEM------------------- 187
           G   + A+YN L     RN+    A+++ + M SQG + ++                   
Sbjct: 458 GMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQA 517

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L+    M+     PD   YT +I        +   L+V +EM +     DV+ Y T++ G
Sbjct: 518 LKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNG 577

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK   +    ELF EM E G+  D   +  LI G   +G + KA  L + ++    + D
Sbjct: 578 LCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPD 637

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  YN++I G C+  + +K  +L+   +   + P+  +   L+     MG +   F+L  
Sbjct: 638 VVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWD 697

Query: 368 QMEKLKFSV--------------AADLEKFFEFLVG---------------------KEE 392
           +M +  F                A +  K  EFL                       KEE
Sbjct: 698 EMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEE 757

Query: 393 RIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLS 449
            +  A  +  +++  G    V  YN+++      G +++A  +  KM  RG+N + ++  
Sbjct: 758 NMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRST-- 815

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           ++  I  HV   ++ EA   H+++++   VP
Sbjct: 816 YTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 846



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 35/177 (19%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+  +Y  +I        +    R+W+EM +   EA ++   T++ G C+ G  V+  E 
Sbjct: 671 PNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEF 730

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN-------- 312
              M   GI+ D   Y  LI G + E  + +A  L+  + +SG   D+  YN        
Sbjct: 731 LSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSR 790

Query: 313 ---------------------------SIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
                                      S+I G        +A+++ +  +Q    PD
Sbjct: 791 QGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 847



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 55/126 (43%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G   +  E L  M      PD   Y  +I     E N+D    +  +M+   +  DV+ Y
Sbjct: 722 GNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITY 781

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++ G  + GR+     +  +M E G+  DR+ Y  LI G V +  + +A  +  +++ 
Sbjct: 782 NVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQ 841

Query: 302 SGYRAD 307
            G+  D
Sbjct: 842 RGFVPD 847


>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 187/424 (44%), Gaps = 47/424 (11%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN--LDACLRVWEEMKKDLVEADV 238
           + +++E + ++ KM+   C PD  +Y  ++ VL   R+   D  +    E+ +  +    
Sbjct: 205 KNKLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKLNELLESGLVPHQ 264

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + Y T+I G C+ G+V +  +   +M E     D     +L+ GL  EG +  A  L   
Sbjct: 265 ITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNT 324

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM-G 357
            +  G   D   YN+II GLC+  +F++A+ L     +  L PD  T N +L   A+  G
Sbjct: 325 WISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEG 384

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNI 417
           +++  F+   +M          +EK F+             D+F              NI
Sbjct: 385 QVEKAFQFRNKM----------VEKSFK------------PDLF------------TCNI 410

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L   G +  AL LF         +++++++  I    + G   EA    + + EM 
Sbjct: 411 LLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEA---FDLLAEME 467

Query: 478 Q----VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           +    VP    YN +  G C+ G+++ A    R+ +   +  P  F   + +  +CR G 
Sbjct: 468 EKNGLVPDQTTYNTIILGYCREGQVEKAFQF-RNKMVEKSFKPDLFTCNILLRGLCREGM 526

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
             K +++ N    +G   + V  + IISG+CK G  EEA  +   ++E+KL  +  T  Y
Sbjct: 527 LVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEKKLGPDCYT--Y 584

Query: 594 DEIL 597
           + IL
Sbjct: 585 NAIL 588



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 145/324 (44%), Gaps = 5/324 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G++ +  +   KM     KPD+F    ++R L  E  LD  L+++          D + 
Sbjct: 277 EGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVT 336

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV-GEGKVGKACDLLKDL 299
           Y T+I GLCK GR     +L  EM+E  +  D   Y  ++  L   EG+V KA      +
Sbjct: 337 YNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKM 396

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V+  ++ DL   N ++ GLC     D A KLF   +    A D  T N ++    + GR 
Sbjct: 397 VEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRF 456

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           +  F LLA+ME+ K  +  D   +   ++G  +E ++  A     ++  K +   +   N
Sbjct: 457 EEAFDLLAEMEE-KNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCN 515

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           IL+  L   G + KAL LF         +++++++  I    + G   EA +   ++ E 
Sbjct: 516 ILLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEK 575

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDA 500
              P    YN +   L   G ++A
Sbjct: 576 KLGPDCYTYNAILCALADAGRMEA 599



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 100/199 (50%), Gaps = 1/199 (0%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           L D++G++ +  +   KM     KPD+F    ++R L  E  LD  L+++          
Sbjct: 379 LADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAI 438

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVGEGKVGKACDL 295
           D + Y T+I GLCK GR     +L  EM+E NG++ D+  Y  +I G   EG+V KA   
Sbjct: 439 DAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQF 498

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
              +V+  ++ DL   N ++ GLCR     KA KLF   +    A D  T N ++    +
Sbjct: 499 RNKMVEKSFKPDLFTCNILLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCK 558

Query: 356 MGRMDNFFKLLAQMEKLKF 374
            GR +  F LLA+M++ K 
Sbjct: 559 EGRFEEAFDLLAEMKEKKL 577



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 159/392 (40%), Gaps = 37/392 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G+  + ++ L ++  +   P    Y  +I     E  ++   +   +M +   + D+  
Sbjct: 242 SGKTDQSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFT 301

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
              L+ GLC  G +    +LF      G  ID   Y  +I GL  EG+  +A DLL ++ 
Sbjct: 302 CNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEME 361

Query: 301 DSGYRADLGIYNSIIGGLCRVK-QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +     D   YN+I+  L   + Q +KA++     V+    PD  T N LL      G +
Sbjct: 362 EKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGML 421

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
           DN  KL                  F   +                KGK   +V  YN ++
Sbjct: 422 DNALKL------------------FNTWIS---------------KGKAIDAVT-YNTII 447

Query: 420 GALLEIGEVKKALYLFGKMRGLN-LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
             L + G  ++A  L  +M   N L  +  +++  I  +   G + +A +  NK++E S 
Sbjct: 448 SGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSF 507

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P +   N L +GLC+ G +  A+ L    +           Y   I  +C+ G  E+  
Sbjct: 508 KPDLFTCNILLRGLCREGMLVKALKLFNTWISK-GKAIDAVTYNTIISGLCKEGRFEEAF 566

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
           ++L EM ++   P+    +AI+  +   G +E
Sbjct: 567 DLLAEMKEKKLGPDCYTYNAILCALADAGRME 598


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/435 (22%), Positives = 189/435 (43%), Gaps = 40/435 (9%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +P+ + Y  +I  L     +   L V ++M       DV+ Y  L+   CKG    +  E
Sbjct: 4   QPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAME 63

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L   M+  G   +   Y VL++G+ GEG V  A +LL++L   G +     YN+++ GLC
Sbjct: 64  LIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLC 123

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
             +++  A +L    ++++  P+ +T N ++      G +    +LL +M   K    A+
Sbjct: 124 SAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMS--KHGCTAN 181

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
           +  +   + G  ++  +  A+ +  ++K  G    +  YN L+  L        A  L  
Sbjct: 182 IVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMD 241

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            M       ++++F+  I    + G +++A E   ++ +    P+   Y+ +  GL K  
Sbjct: 242 NMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKAT 301

Query: 497 EIDAAM-----------------MLVRDCLGNVAS----------------GPTEFKYAL 523
           ++D A+                  L+ +CL +  +                 P    Y  
Sbjct: 302 KLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNA 361

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            +L +CR+G+ E  I+++  M   GC P+++    +I G+   G L EAR++   L  R 
Sbjct: 362 ILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRD 421

Query: 584 LLTEANTIVYDEILI 598
           +L   N+++  E L+
Sbjct: 422 VL--VNSLIKSEALL 434



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 141/308 (45%), Gaps = 24/308 (7%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           N A++N + Y L R  L + A                +++LEKM ++ C  ++  Y A+I
Sbjct: 146 NEATFNVVIYSLCRKGLLQQA----------------IQLLEKMSKHGCTANIVTYNAII 189

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
             L  +RN+D  + +  +MK    + D++ Y TL+ GLC   R V   EL   M +NG L
Sbjct: 190 NGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCL 249

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
            D   +  LI  L  +G +  A ++ K + D G   +   Y++II GL +  + D+A +L
Sbjct: 250 PDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALEL 309

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS-VAADLEKFFEFLVG 389
           F         PD   +  LL  C  +   D   + +  + KL+ S ++     +   L+G
Sbjct: 310 FNEMGHKGFNPD--KIYQLLAEC--LNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLG 365

Query: 390 --KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
             +  +   A+D+   +   G     + Y IL+  L   G + +A  L  K+   ++ VN
Sbjct: 366 LCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRDVLVN 425

Query: 447 SLSFSIAI 454
           SL  S A+
Sbjct: 426 SLIKSEAL 433



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 107/217 (49%), Gaps = 15/217 (6%)

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YN L+  L E G+V+ AL +   M       + ++++I ++   +     +A E  + + 
Sbjct: 10  YNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMR 69

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC---RS 531
                P+   YN L  G+C  G++D A+ L+R+ L +    P+   Y   +  +C   R 
Sbjct: 70  AEGCTPNNVTYNVLMDGMCGEGDVDDALELLRN-LPSHGCKPSTVNYNTVLKGLCSAERW 128

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           G+A+   E++ EM +E CPPNE   + +I  +C+ G L++A ++   + +      AN +
Sbjct: 129 GDAD---ELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHG--CTANIV 183

Query: 592 VYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
            Y+ I+    +++  D         GL SK+K+ GCK
Sbjct: 184 TYNAIINGLCEQRNVD------GAMGLLSKMKSYGCK 214


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 194/436 (44%), Gaps = 12/436 (2%)

Query: 177 LMDSQGRIAEMLE---ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L+D  G+I  + E   + E+M+   C+PDV  Y A+I      + +      + EMK   
Sbjct: 173 LIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKD 232

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           ++ +V++Y TLI  LCK G +    + F +M   G+L +   Y  LI+     G +G+A 
Sbjct: 233 LKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAF 292

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            L  +++      ++  Y +++ GLC     ++A +LF    +  + P+      L+   
Sbjct: 293 MLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGH 352

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
            ++  MD   +L  +M +        L     + +  E ++     +  E+K  G  + P
Sbjct: 353 IKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANP 412

Query: 414 -IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
            IY  LM A  + G   +A+ L  +MR L  EV  ++F   I    + G + EA     +
Sbjct: 413 VIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGR 472

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           + +    P+VA Y  L  GLCK   I  A  L  D + +    P +  Y   I    + G
Sbjct: 473 MPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLF-DEMQDKNMIPDKIAYTAMIDGNLKHG 531

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
             ++ + + N+M + G   +    ++++ G+ + G +++ARK    +  +        I+
Sbjct: 532 NFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKG-------II 584

Query: 593 YDEILIEHMKKKTADL 608
            DE L   + +K  +L
Sbjct: 585 PDETLCTRLLRKHYEL 600



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 109/460 (23%), Positives = 196/460 (42%), Gaps = 43/460 (9%)

Query: 147 GYKHNFASYNALAYCLSRNNL-FRAADQVPELMDSQGRI--AEMLEILEKMRRNLCKPDV 203
           G++H   SY  L + L    + F A + + EL+ S   +  +++ EIL    RN+C P  
Sbjct: 4   GFRHTTESYCILVHILFYARMYFHANNILKELVLSSWVLPGSDVFEILWT-TRNVCVPGF 62

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             + A+  VL     L+A  + +  M K  V     +    +  L K G      + FR+
Sbjct: 63  GVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRD 122

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M   GI      Y ++I  +  EG +  A  L + +   G   D+  YN++I G  ++  
Sbjct: 123 MVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGL 182

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            D++  LFE        PD  T N L+         ++F K    +   +F         
Sbjct: 183 LDESVCLFEEMKFMGCEPDVITYNALI---------NSFCKFKGMLRAFEF--------- 224

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                            F E+K K    +V  Y+ L+ AL + G ++ A+  F  M  + 
Sbjct: 225 -----------------FREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVG 267

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           L  N  ++S  I  + ++G++ EA    +++++     ++  Y  L  GLC+ G ++ A 
Sbjct: 268 LLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAE 327

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            L R  +G     P    Y   I    +    +K +E+ NEM ++   P+ ++   I+ G
Sbjct: 328 ELFR-AMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWG 386

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602
           +C    LEE + + T ++E  +   AN ++Y  ++  + K
Sbjct: 387 LCSESKLEECKIIMTEMKESGI--GANPVIYTTLMDAYFK 424



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 178/391 (45%), Gaps = 12/391 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P VF Y  MI  +  E ++     ++E+MKK  +  D++ Y TLI G  K G +     L
Sbjct: 130 PTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCL 189

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F EMK  G   D   Y  LI        + +A +  +++ D   + ++  Y+++I  LC+
Sbjct: 190 FEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCK 249

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
                 A K F    +  L P+  T + L+    + G +   F L  +M  L+  V  ++
Sbjct: 250 EGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEM--LQEHVDLNI 307

Query: 381 EKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             +   L G  E  MM  A ++F  +   G + ++  Y  L+   +++  + KA+ LF +
Sbjct: 308 VTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNE 367

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA---AYNCLTKGLCK 494
           MR  +++ + L +   I   + S   LE  EC   + EM +    A    Y  L     K
Sbjct: 368 MREKDIKPDILLWG-TIVWGLCSESKLE--ECKIIMTEMKESGIGANPVIYTTLMDAYFK 424

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
            G    A+ L+ + + ++ +  T   +   I  +C+ G  ++ I     M      PN  
Sbjct: 425 AGNRTEAINLLEE-MRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVA 483

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
           + +A+I G+CK+  + +A+K+F  ++++ ++
Sbjct: 484 VYTALIDGLCKNNCIGDAKKLFDEMQDKNMI 514



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 125/261 (47%), Gaps = 17/261 (6%)

Query: 388 VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
           V KE  ++ A  +FE++K  G +  +  YN L+    +IG + +++ LF +M+ +  E +
Sbjct: 142 VCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPD 201

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
            ++++  I    +   +L A E   ++ +    P+V +Y+ L   LCK G +  A+    
Sbjct: 202 VITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFV 261

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
           D +  V   P EF Y+  I   C++G   +   + +EM QE    N V  + ++ G+C+ 
Sbjct: 262 D-MTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEE 320

Query: 567 GTLEEARKVFTNLRERKL---LTEANTIVYDEILIEHMKKKTA------------DLVLS 611
           G + EA ++F  + +  +   L     +++  I +  M K               D++L 
Sbjct: 321 GMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLW 380

Query: 612 GLKFFGLESKLKAKGCKLLSS 632
           G   +GL S+ K + CK++ +
Sbjct: 381 GTIVWGLCSESKLEECKIIMT 401



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 3/192 (1%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMD+    G   E + +LE+MR    +  V  + A+I  L     +   +  +  M    
Sbjct: 418 LMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHD 477

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           ++ +V  Y  LI GLCK   +    +LF EM++  ++ D+  Y  +I+G +  G   +A 
Sbjct: 478 LQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEAL 537

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           ++   +++ G   DL  Y S++ GL +  Q  +A K     +   + PD +    LL   
Sbjct: 538 NMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKH 597

Query: 354 AEMGRMDNFFKL 365
            E+G +D   +L
Sbjct: 598 YELGNIDEAIEL 609



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 16/153 (10%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           N A Y AL   L +NN    A ++ + M  +  I                PD  AYTAMI
Sbjct: 481 NVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMI----------------PDKIAYTAMI 524

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
                  N    L +  +M +  +E D+ AY +L+ GL + G+V +  +   EM   GI+
Sbjct: 525 DGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGII 584

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
            D  +   L+      G + +A +L  +LV+ G
Sbjct: 585 PDETLCTRLLRKHYELGNIDEAIELQNELVEKG 617


>gi|356519580|ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Glycine max]
          Length = 1012

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 125/515 (24%), Positives = 231/515 (44%), Gaps = 57/515 (11%)

Query: 143 GKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELM-----DSQGRIAEM-LEILEKM 194
           G + G K +  +YN L  A+C  R +L +A   V E++     D  G + +  +E  + +
Sbjct: 171 GWKNGVKPDIVTYNTLVNAFC-KRGDLAKAESVVNEILGFRRDDESGVLNDCGVETWDGL 229

Query: 195 RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
           R    +P V  +T +I      R +D    ++E+M    V  DV+   +++ GLC+ G++
Sbjct: 230 RD--LQPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGKL 287

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
                L REM   G+  +   Y  +I  L+  G+V +A +    +V  G   DL +  ++
Sbjct: 288 TEAAMLLREMYNMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQMVVRGISIDLVLCTTM 347

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
           + GL +  +  +A ++F+  ++ +L P+  T   LL    ++G ++    +L +MEK   
Sbjct: 348 MDGLFKAGKSKEAEEMFQTILKLNLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEH- 406

Query: 375 SVAADLEKFFEFLVGKEERIMM--ALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKA 431
            V  ++  F   + G  ++ M+  A++V  ++ +     +V +Y IL+      G+ + A
Sbjct: 407 -VLPNVVTFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQHEAA 465

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII----------------- 474
              + +M+   LE N++ F I +     SG + EA      I+                 
Sbjct: 466 AGFYKEMKSWGLEENNIIFDILLNNLKRSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDG 525

Query: 475 ---------------EMSQVP---SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
                          EM++      V AYN LTKGL ++G+ +   +  R  +  +   P
Sbjct: 526 YFKEGNESAALSVVQEMTEKDMQFDVVAYNALTKGLLRLGKYEPKSVFSR--MIELGLTP 583

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
               Y   +      G+ E  +++LNEM   G  PN V  + +I G+CK G +E   KV 
Sbjct: 584 DCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGGLCKTGAIE---KVI 640

Query: 577 TNLRERKLLTEANT-IVYDEILIEHMKKKTADLVL 610
           + L E   +    T I++  +L  + + + AD +L
Sbjct: 641 SVLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAIL 675



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 180/404 (44%), Gaps = 7/404 (1%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +L+KM +    P+V  ++++I   A +  L+  + V  +M +  +  +V  Y  L+ G  
Sbjct: 398 VLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDGYF 457

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           + G+       ++EMK  G+  +  I+ +L+  L   G + +A  L+KD++  G   D+ 
Sbjct: 458 RTGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRSGGMKEAQSLIKDILSKGIYLDVF 517

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD--NFFKLLA 367
            Y+S++ G  +      A  + +   + D+  D    N L      +G+ +  + F  + 
Sbjct: 518 NYSSLMDGYFKEGNESAALSVVQEMTEKDMQFDVVAYNALTKGLLRLGKYEPKSVFSRMI 577

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
           ++      V  +      F+ GK E    ALD+  E+K  G   ++  YNIL+G L + G
Sbjct: 578 ELGLTPDCVTYNSVMNTYFIQGKTEN---ALDLLNEMKSYGVMPNMVTYNILIGGLCKTG 634

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            ++K + +  +M  +      +     ++ +  S       + H K+++M    +   YN
Sbjct: 635 AIEKVISVLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYN 694

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L   LC++G    A +++ + +    S      Y   I   C     EK     ++M  
Sbjct: 695 TLITVLCRLGMTKKANVVLTEMVIKGISADI-VTYNALIRGYCTGSHVEKAFNTYSQMLV 753

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            G  PN    +A++ G+  +G + +A K+ + +RER L+  A T
Sbjct: 754 SGISPNITTYNALLEGLSTNGLMRDADKLVSEMRERGLVPNATT 797



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/426 (20%), Positives = 185/426 (43%), Gaps = 11/426 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + + +E+L KM +    P+VF Y  ++         +A    ++EMK   +E + + 
Sbjct: 424 KGMLNKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEMKSWGLEENNII 483

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  L+  L + G +     L +++   GI +D   Y  L++G   EG    A  +++++ 
Sbjct: 484 FDILLNNLKRSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAALSVVQEMT 543

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +   + D+  YN++  GL R+ +++    +F   ++  L PD  T N ++      G+ +
Sbjct: 544 EKDMQFDVVAYNALTKGLLRLGKYEPK-SVFSRMIELGLTPDCVTYNSVMNTYFIQGKTE 602

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYSSVPI-YN 416
           N   LL +M+   + V  ++  +   L+G   K   I   + V  E+   GY   PI + 
Sbjct: 603 NALDLLNEMKS--YGVMPNMVTY-NILIGGLCKTGAIEKVISVLHEMLAVGYVPTPIIHK 659

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            L+ A     +    L +  K+  + L +N + ++  I      G   +A     +++  
Sbjct: 660 FLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLITVLCRLGMTKKANVVLTEMVIK 719

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
                +  YN L +G C    ++ A       L +  S P    Y   +  +  +G    
Sbjct: 720 GISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSGIS-PNITTYNALLEGLSTNGLMRD 778

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
             ++++EM + G  PN    + ++SG  + G   ++ K++  +  +  +    T  Y+ +
Sbjct: 779 ADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKGFIPTTGT--YNVL 836

Query: 597 LIEHMK 602
           + ++ K
Sbjct: 837 IQDYAK 842



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 110/504 (21%), Positives = 199/504 (39%), Gaps = 79/504 (15%)

Query: 168 FRAADQVPEL---------MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
            RA   VP L          ++ G ++++  +  +M      P+VF+   ++  L    +
Sbjct: 1   MRALSLVPSLPLWNDLLYEFNASGFVSQVKVLYSEMVLCGVVPNVFSVNLLVHSLCKVGD 60

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
           L   L        D V      Y T++ G CK G   +G  L  EM + G+  D     +
Sbjct: 61  LGLALGYLRNSVFDHV-----TYNTVVWGFCKRGLADQGFGLLSEMVKKGVCFDSVTCNI 115

Query: 279 LIEG----------------LVGEGK-------------------VGKACDLLKDLVDSG 303
           L++G                LVG G                    V +A DL++D   +G
Sbjct: 116 LVKGYCQIGLVQYAEWIMGNLVGGGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNG 175

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFE------------------VTVQD---DLAPD 342
            + D+  YN+++   C+     KA  +                    V   D   DL P 
Sbjct: 176 VKPDIVTYNTLVNAFCKRGDLAKAESVVNEILGFRRDDESGVLNDCGVETWDGLRDLQPT 235

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDV 400
             T   L+    +   +D+FF L  QM  +   V  D+      L G  +  ++  A  +
Sbjct: 236 VVTWTTLIAAYCKHRGIDDFFSLYEQM--IMSGVMPDVVTCSSILYGLCRHGKLTEAAML 293

Query: 401 FEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
             E+   G     + Y  ++ ALL+ G V +A     +M    + ++ +  +  +    +
Sbjct: 294 LREMYNMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGLFK 353

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           +G   EA E    I++++ VP+   Y  L  G CK+G+++ A  +++  +      P   
Sbjct: 354 AGKSKEAEEMFQTILKLNLVPNCVTYTALLDGHCKVGDVEFAETVLQK-MEKEHVLPNVV 412

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            ++  I    + G   K +EVL +M Q    PN  + + ++ G  + G  E A   +  +
Sbjct: 413 TFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEM 472

Query: 580 RERKLLTEANTIVYDEILIEHMKK 603
           +   L  E N I++D IL+ ++K+
Sbjct: 473 KSWGL--EENNIIFD-ILLNNLKR 493



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 164/382 (42%), Gaps = 35/382 (9%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD   Y +++     +   +  L +  EMK   V  +++ Y  LI GLCK G + +   +
Sbjct: 583 PDCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGGLCKTGAIEKVISV 642

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             EM   G +    I+  L++      K      + K LVD G   +  +YN++I  LCR
Sbjct: 643 LHEMLAVGYVPTPIIHKFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLITVLCR 702

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           +    KA  +    V   ++ D  T N L+        ++  F   +QM  L   ++ ++
Sbjct: 703 LGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQM--LVSGISPNI 760

Query: 381 EKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             +   L G     +M  A  +  E++ +G   +   YNIL+     +G  + ++ L+ +
Sbjct: 761 TTYNALLEGLSTNGLMRDADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSIKLYCE 820

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG- 496
           M        + ++++ IQ + ++G + +A E  N+++   ++P+ + Y+ L  G CK+  
Sbjct: 821 MITKGFIPTTGTYNVLIQDYAKAGKMRQARELLNEMLTRGRIPNSSTYDVLICGWCKLSC 880

Query: 497 --EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
             E+D                         +L +    EA+K+   L EM ++G  P+E 
Sbjct: 881 QPEMD------------------------RLLKLSYQNEAKKL---LREMCEKGHVPSES 913

Query: 555 ICSAIISGMCKHGTLEEARKVF 576
               I S     G  ++A+++ 
Sbjct: 914 TLMYISSNFSAPGKRDDAKRLL 935



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 162/369 (43%), Gaps = 28/369 (7%)

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL------FREMKENGILIDRAIY 276
           L + E+  K+ V+ D++ Y TL+   CK G + +   +      FR   E+G+L D  + 
Sbjct: 165 LDLVEDGWKNGVKPDIVTYNTLVNAFCKRGDLAKAESVVNEILGFRRDDESGVLNDCGV- 223

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
                         +  D L+DL     +  +  + ++I   C+ +  D  + L+E  + 
Sbjct: 224 --------------ETWDGLRDL-----QPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIM 264

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
             + PD  T + +L      G++     LL +M  +               + K  R+M 
Sbjct: 265 SGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTTIISALLKSGRVME 324

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A +   ++  +G S  + +   +M  L + G+ K+A  +F  +  LNL  N ++++  + 
Sbjct: 325 AFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKLNLVPNCVTYTALLD 384

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
            H + GD+  A     K+ +   +P+V  ++ +  G  K G ++ A+ ++R  +  +   
Sbjct: 385 GHCKVGDVEFAETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLRKMV-QMNIM 443

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P  F YA+ +    R+G+ E       EM   G   N +I   +++ + + G ++EA+ +
Sbjct: 444 PNVFVYAILLDGYFRTGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRSGGMKEAQSL 503

Query: 576 FTNLRERKL 584
             ++  + +
Sbjct: 504 IKDILSKGI 512



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 1/191 (0%)

Query: 180 SQGRIAE-MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           S+ R A+ +L+I +K+       +   Y  +I VL           V  EM    + AD+
Sbjct: 666 SRSRKADAILQIHKKLVDMGLNLNQMVYNTLITVLCRLGMTKKANVVLTEMVIKGISADI 725

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + Y  LI G C G  V +    + +M  +GI  +   Y  L+EGL   G +  A  L+ +
Sbjct: 726 VTYNALIRGYCTGSHVEKAFNTYSQMLVSGISPNITTYNALLEGLSTNGLMRDADKLVSE 785

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           + + G   +   YN ++ G  RV     + KL+   +     P   T N L+   A+ G+
Sbjct: 786 MRERGLVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKGFIPTTGTYNVLIQDYAKAGK 845

Query: 359 MDNFFKLLAQM 369
           M    +LL +M
Sbjct: 846 MRQARELLNEM 856



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 16/136 (11%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G   N  +YNAL   LS N L R AD++   M  +G +                P+   Y
Sbjct: 755 GISPNITTYNALLEGLSTNGLMRDADKLVSEMRERGLV----------------PNATTY 798

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             ++       N    ++++ EM           Y  LI    K G++ +  EL  EM  
Sbjct: 799 NILVSGHGRVGNKRDSIKLYCEMITKGFIPTTGTYNVLIQDYAKAGKMRQARELLNEMLT 858

Query: 267 NGILIDRAIYGVLIEG 282
            G + + + Y VLI G
Sbjct: 859 RGRIPNSSTYDVLICG 874


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 185/393 (47%), Gaps = 13/393 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++     ++ K+ +     D F  T +++ L  +      L +++         D + Y
Sbjct: 105 GQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAVSKGFSFDEVCY 164

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI GLCK G+     EL R+M++ G+  +  +Y ++++GL  EG V +AC L  ++V 
Sbjct: 165 GTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVG 224

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRM- 359
            G   D+  YNS+I G C   QF  A +L  E+ +++D+ PD  T N L+    ++G + 
Sbjct: 225 KGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVA 284

Query: 360 --DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKG-YSSVPI 414
              N F L+     +K  +  D+      + G   R  M  A +VF+ +  +G   +V  
Sbjct: 285 EARNVFGLM-----IKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVIS 339

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y+ L+    ++  V +AL L  +M   NL  ++++++  +    +SG +L   +    + 
Sbjct: 340 YSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMR 399

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
              Q P +  YN L     K   +D A+ L +  + +    P    Y + I  +C+ G  
Sbjct: 400 ASGQAPDLITYNVLLDDYLKRECLDKALALFQHIV-DTGISPNIRTYNILIDGLCKGGRM 458

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
           +   E+   ++ +GC PN    + +I+G+ + G
Sbjct: 459 KAAKEIFQLLSVKGCRPNIRTYNIMINGLRREG 491



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 165/411 (40%), Gaps = 67/411 (16%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           KP +   +  I  L     +     V  ++ K     D     TL+ GLC  GR      
Sbjct: 88  KPSLVTLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALN 147

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L+      G   D   YG LI GL   GK   A +LL+ +   G R +L +YN ++ GLC
Sbjct: 148 LYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLC 207

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +     +A  L    V   +  D  T N L+      G+     +LL +M          
Sbjct: 208 KEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEM---------- 257

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
                   V KE+   +  DV+             +NIL+ AL ++G V +A  +FG M 
Sbjct: 258 --------VMKED---VRPDVYT------------FNILVDALCKLGMVAEARNVFGLMI 294

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              LE + +S +  +      G + EA E  ++++E  ++P+V +Y+ L  G CK+  +D
Sbjct: 295 KRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVD 354

Query: 500 AAMMLVR--------------DCLGNVASGPTEFKYALTILHVCR-SGEA---------- 534
            A+ L+               +CL +  S      Y   ++   R SG+A          
Sbjct: 355 EALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLL 414

Query: 535 ---------EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
                    +K + +   +   G  PN    + +I G+CK G ++ A+++F
Sbjct: 415 DDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIF 465



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 116/258 (44%), Gaps = 26/258 (10%)

Query: 100 QFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTL-----ASKFFHWAGKQKGYKHNFAS 154
           QFQ   +++ E+     V PD+    + V+    L     A   F    K +G + +  S
Sbjct: 246 QFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIK-RGLEPDVVS 304

Query: 155 YNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRV 212
            NAL   +CL                  +G ++E  E+ ++M      P+V +Y+ +I  
Sbjct: 305 CNALMNGWCL------------------RGCMSEAKEVFDRMVERGKLPNVISYSTLING 346

Query: 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
               + +D  LR+  EM +  +  D + Y  L+ GL K GRV+   +L   M+ +G   D
Sbjct: 347 YCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPD 406

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              Y VL++  +    + KA  L + +VD+G   ++  YN +I GLC+  +   A ++F+
Sbjct: 407 LITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQ 466

Query: 333 VTVQDDLAPDFSTVNPLL 350
           +       P+  T N ++
Sbjct: 467 LLSVKGCRPNIRTYNIMI 484



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 70/141 (49%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +   GR+    +++E MR +   PD+  Y  ++        LD  L +++ +    +  +
Sbjct: 382 LSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPN 441

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           +  Y  LI GLCKGGR+    E+F+ +   G   +   Y ++I GL  EG + +A  LL 
Sbjct: 442 IRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLL 501

Query: 298 DLVDSGYRADLGIYNSIIGGL 318
           ++VD G+  +   ++ ++  L
Sbjct: 502 EMVDDGFPPNAVTFDPLVRAL 522



 Score = 46.2 bits (108), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 94/273 (34%), Gaps = 72/273 (26%)

Query: 405 KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
           KG    S+   +I + +L  +G++  A  +  K+      V+  + +  ++     G   
Sbjct: 84  KGTPKPSLVTLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTF 143

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD----------------- 507
           EA   ++  +          Y  L  GLCK+G+   A+ L+R                  
Sbjct: 144 EALNLYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVV 203

Query: 508 ---------------CLGNVASGPT--EFKYALTILHVCRSGEAEKIIEVLNEMT----- 545
                          C   V  G     F Y   I   C +G+ +  + +LNEM      
Sbjct: 204 DGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDV 263

Query: 546 -------------------------------QEGCPPNEVICSAIISGMCKHGTLEEARK 574
                                          + G  P+ V C+A+++G C  G + EA++
Sbjct: 264 RPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKE 323

Query: 575 VFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           VF  + ER  L   N I Y  ++  + K K  D
Sbjct: 324 VFDRMVERGKL--PNVISYSTLINGYCKVKMVD 354


>gi|297723955|ref|NP_001174341.1| Os05g0313900 [Oryza sativa Japonica Group]
 gi|255676233|dbj|BAH93069.1| Os05g0313900 [Oryza sativa Japonica Group]
          Length = 1070

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 150/629 (23%), Positives = 258/629 (41%), Gaps = 116/629 (18%)

Query: 76  PKTFQLQRHLSP------------IARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVA 123
           P++F      SP            +A  + D F +      P+   + ++LRR+  +L A
Sbjct: 18  PRSFSFSTSASPPPRAPVPASPSYLAHHLLDEFSR------PRATRDAARLRRLAAELTA 71

Query: 124 ----EVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRN---NLFR-AADQV- 174
                VL    +   A  FF WA  Q G++H+  S NA+A  L R+   +L R AAD + 
Sbjct: 72  PAAESVLLRLPSWRHALDFFRWAADQPGFRHSCYSLNAMASLLPRHQRAHLDRLAADAIS 131

Query: 175 PELMDSQGRIAEMLEIL-------------EKMRRNL-CKPDVFAYTAMIRVLA-AERNL 219
              + + G +  +L  L             +  R +  C P+ + Y  ++  LA A R  
Sbjct: 132 ARCLMTPGALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRAD 191

Query: 220 DACLRVWEEMKK-----------------------------------DLVEADVMAYVTL 244
           DA  R+ E + +                                   +L   D     TL
Sbjct: 192 DAQARLREMVARCGDGSVDKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHVLTTL 251

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           ++   K G+V    EL   M+  G+ +      VL+ G   +G+V KA D+   +V  G+
Sbjct: 252 MVAFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGF 311

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP----------------DFSTVNP 348
             DL +Y+ +I GLC+ K   +A KLF+      +AP                DF+ + P
Sbjct: 312 VVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDFAVIGP 371

Query: 349 LLVCCAEMGRMDNFFKLL-AQMEKLKFSVAADLEKFFEFLV-----GKEERIMMA----- 397
            +   AE  +  +   L    +E+L      ++E  ++ L      G+     +A     
Sbjct: 372 FINENAEYLKSGSVVPLYNVVLEELVH--CGEVEAAYQLLRSMVCGGQAVNNDVAGGAHM 429

Query: 398 LDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
           L + E+ K    S    +NI++  L ++ ++  AL L   M  L  +   L F+  I   
Sbjct: 430 LHIREDAKPNSDS----FNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHEL 485

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
                + E     N++ ++   PS   YN L  G+C+  +  AA+ L+R+   N    P 
Sbjct: 486 CNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTN--GHPP 543

Query: 518 EFKYALTIL-HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
             K    ++  +C SG   + ++ L+ M Q G  P+ V  SA ++GMC  G +++A  +F
Sbjct: 544 WIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLF 603

Query: 577 TNLRERKLLTEANTIVYDEILIEHMKKKT 605
            ++  +  L +   +V   ILI   +K +
Sbjct: 604 RDISCKYYLPD---VVAHNILINGFRKSS 629



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 103/503 (20%), Positives = 194/503 (38%), Gaps = 92/503 (18%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++   +E+L  M     +      + ++     +  +D  + ++ +M       D+  Y
Sbjct: 259 GKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMY 318

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGI-----LIDRAI--------------------- 275
             LI GLC+   + R  +LF+EMK +G+     L+ + I                     
Sbjct: 319 SVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDFAVIGPFINENAE 378

Query: 276 ----------YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI--------------- 310
                     Y V++E LV  G+V  A  LL+ +V  G   +  +               
Sbjct: 379 YLKSGSVVPLYNVVLEELVHCGEVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHIREDAKP 438

Query: 311 ----YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
               +N ++ GLC+VK+ D A  L +  +           N L+     M R++  + + 
Sbjct: 439 NSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGYGIF 498

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY----------------- 409
            QM+ L  + +        + + + +    ALD+  E++  G+                 
Sbjct: 499 NQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFS 558

Query: 410 -------------------SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
                                +  Y+  M  +   GEV  AL+LF  +       + ++ 
Sbjct: 559 GRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVAH 618

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +I I    +S  + EA +   +++E    PSV  YN +    CK G I+ A+  + D + 
Sbjct: 619 NILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYL-DKMV 677

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
                PT   Y   I   C +G  ++ I++  EM ++GC PN +  +A I+G+ K G +E
Sbjct: 678 YEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIE 737

Query: 571 EARKVFTNLRERKLLTEANTIVY 593
            A   F  +  +    +  +++Y
Sbjct: 738 TALTYFEEMVTKGFELDTFSLLY 760



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 111/258 (43%), Gaps = 20/258 (7%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           +YN+L Y + R    +AA                L++L +M+ N   P +   T M++ L
Sbjct: 512 TYNSLFYGICRRKDPKAA----------------LDLLREMQTNGHPPWIKNCTEMVQQL 555

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
                +   ++  + M +     D++ Y   + G+C  G V     LFR++     L D 
Sbjct: 556 CFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDV 615

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             + +LI G     K+ +A  +++++++ G    +  YN +I   C+  + +KA    + 
Sbjct: 616 VAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDK 675

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KE 391
            V ++  P   T   L+      GR D   KL  +M +     A +   +  F+ G  K 
Sbjct: 676 MVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREK--GCAPNNIAYTAFINGLRKC 733

Query: 392 ERIMMALDVFEELKGKGY 409
            RI  AL  FEE+  KG+
Sbjct: 734 GRIETALTYFEEMVTKGF 751



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 1/209 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GR+ E ++ L+ M +    PD+  Y+A +  +     +D  L ++ ++       DV+A
Sbjct: 558 SGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVA 617

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  LI G  K  ++    ++  EM E G+      Y ++I+     G++ KA   L  +V
Sbjct: 618 HNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMV 677

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
               +  +  Y S+I G C   + D+A KL+    +   AP+       +    + GR++
Sbjct: 678 YEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIE 737

Query: 361 NFFKLLAQMEKLKFSVAA-DLEKFFEFLV 388
                  +M    F +    L  F  FL+
Sbjct: 738 TALTYFEEMVTKGFELDTFSLLYFINFLI 766



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 57/119 (47%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI + +  L+KM     +P V  YT++I    +    D  +++W EM++     + +AY
Sbjct: 664 GRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAY 723

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
              I GL K GR+      F EM   G  +D       I  L+  G   K C+LLK+++
Sbjct: 724 TAFINGLRKCGRIETALTYFEEMVTKGFELDTFSLLYFINFLISNGYPMKGCELLKEVL 782



 Score = 45.8 bits (107), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 3/126 (2%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S GR  E +++  +MR   C P+  AYTA I  L     ++  L  +EEM     E D  
Sbjct: 697 SAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEMVTKGFELDTF 756

Query: 240 AYVTLIMGLCKGGRVVRGHELFRE-MKENGILIDRAIYGVLIEGLVGEGKVG-KACDLLK 297
           + +  I  L   G  ++G EL +E ++++    +  + G++ E +V   K G  + D+LK
Sbjct: 757 SLLYFINFLISNGYPMKGCELLKEVLQKDTYGNNLKMVGLINEAVVELSKDGITSSDILK 816

Query: 298 DLVDSG 303
             VD G
Sbjct: 817 -FVDKG 821


>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
          Length = 579

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/420 (23%), Positives = 188/420 (44%), Gaps = 34/420 (8%)

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           + Y  +++     R +    +V+EEM++   + D+ AY  L+  L K G V +  ++F +
Sbjct: 129 YTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFED 188

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           MK+   + D   Y +LI      G+  K      ++V  G   +L  +N+II  L + K 
Sbjct: 189 MKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKM 248

Query: 324 FDKAYKLFEVTVQDDLAPD---FSTVNPLLVCCAEMGRMDNFFKLLAQ-MEKLKFSV--- 376
            DK   +    V++D  P+   +S    +L    ++ R++    + ++ M +  +S    
Sbjct: 249 VDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLVK 308

Query: 377 -----------------------AADLEKFFEFL--VGKEERIMMALDVFEELKGKG-YS 410
                                    D + F   L  +   E+ + A+D+   +  KG  +
Sbjct: 309 SLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVT 368

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            V +YN++  AL ++ +V     LF KM+   +  +  +++I I  +   G + +A E  
Sbjct: 369 DVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELF 428

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
             +   S  P V  YN L   L K G++D A ML ++ +      P  F Y++ I    +
Sbjct: 429 EVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKE-MQEKGYDPDVFTYSILIECFGK 487

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           S + E    + +EM  EGC PN V  + ++  + + G  EEA K++  ++++ L+ ++ T
Sbjct: 488 SNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSIT 547



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 168/397 (42%), Gaps = 42/397 (10%)

Query: 108 VTELSKLRRVTPDLVAE--VLKVENNPTLASKFFHWAGK--QKGYKHNFASYNALAYCLS 163
           V E  K +   PD      ++++       SKF  +  +   KG   N  ++N +   L 
Sbjct: 185 VFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALG 244

Query: 164 RNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL---- 219
           +N +                + +++ +L KM  N C+P+ F Y+  + +LA E  L    
Sbjct: 245 KNKM----------------VDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLN 288

Query: 220 ---DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
              D C R    M + +       Y  L+  LCK G     H +F  M  +    DR  +
Sbjct: 289 EVLDICSRF---MNRSI-------YSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAF 338

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
             ++E L    K  +A DLL  + + G   D+G+YN +   L ++KQ      LF+    
Sbjct: 339 VSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKT 398

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERI 394
           + + PD  T N ++     +G +D   +L   ME    S   D+  +   +  +GK   +
Sbjct: 399 NGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEA--SSCKPDVVTYNSLINCLGKHGDL 456

Query: 395 MMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
             A  +F+E++ KGY   V  Y+IL+    +  +V+ A  LF +M       N ++++I 
Sbjct: 457 DEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNIL 516

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           + C    G   EA + +  + +   +P    Y+ L +
Sbjct: 517 LDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILER 553



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/422 (20%), Positives = 172/422 (40%), Gaps = 48/422 (11%)

Query: 200 KPDVFAYTAMIRVLAAER-NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           + D F+Y  ++ +L   R      LR+  +M++D V  ++     L+     G  + R  
Sbjct: 57  RHDAFSYNRILALLFRTRAGPSEALRLVADMERDGVAGNISTINLLVGMGGGGVEMERCL 116

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           EL  +    G+ +    Y  +++  +   +V K   + +++   GY+ D+  YN ++  L
Sbjct: 117 ELASKW---GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDAL 173

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--------- 369
            +    D+A+++FE   Q    PD  T   L+    + GR   F     +M         
Sbjct: 174 AKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNL 233

Query: 370 ----------------EKLKFSVAADLE-----KFFEFLV--------GKEERIMMALDV 400
                           +K+ F ++  +E       F + +        G+  R+   LD+
Sbjct: 234 IAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDI 293

Query: 401 FEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
                 +      IY+ L+ +L + G   +A  +F +M   + + +  +F   ++    +
Sbjct: 294 CSRFMNRS-----IYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNA 348

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
              LEA +  + + E   V  V  YN +   L K+ ++     L  D +      P  F 
Sbjct: 349 EKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLF-DKMKTNGIIPDVFT 407

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           Y + I    R G  +K  E+   M    C P+ V  +++I+ + KHG L+EA  +F  ++
Sbjct: 408 YNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQ 467

Query: 581 ER 582
           E+
Sbjct: 468 EK 469


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 181/388 (46%), Gaps = 10/388 (2%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+V  +  +I+ +     +D  ++++ +M     + DV  Y TL+ GLCK  R+     L
Sbjct: 167 PNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSL 226

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             EM+ +G       + VLI GL  +G + +   L+ ++   G   +   YN++I GLC 
Sbjct: 227 LDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCL 286

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             + +KA  L +  V     P+  T   ++    + GR  +  ++LA ME+  + V    
Sbjct: 287 KGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVN--- 343

Query: 381 EKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
           E  +  L+    KE +   A+ +F+E+  K    +  +Y+ ++  L   G+  +AL +  
Sbjct: 344 EYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLS 403

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M     + N+ ++S  ++   E+G+  +A E    + + +   +   Y+ L  GLCK G
Sbjct: 404 EMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDG 463

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM--TQEGCPPNEV 554
           ++  AMM+    LG     P    Y   I  +  +G  E  +++ NEM   +    P+ V
Sbjct: 464 KVKEAMMVWAQMLGK-GCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVV 522

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRER 582
             + +++ +CK  ++  A  +  ++ +R
Sbjct: 523 TYNILLNALCKQSSISRAIDLLNSMLDR 550



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/505 (20%), Positives = 229/505 (45%), Gaps = 30/505 (5%)

Query: 128 VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIA-- 185
           +E++P ++ K F    K   YK   +++ +L    +    F++ ++V + M  + R+   
Sbjct: 36  IEHDPPISDKIFKSGPKMGSYKLGDSTFYSLIDNYANLGDFKSLEKVLDRMRCEKRVVVE 95

Query: 186 -----------------EMLEILEKMRRNL-CKPDVFAYTAMIRVLAAERNLDACLRVWE 227
                            + + + ++M     CK  V ++ +++ V+  E      L  + 
Sbjct: 96  KCFVVIFKAYGKAHLPEKAVGLFDRMAYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYN 155

Query: 228 EM---KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284
            +   K   +  +V+ +  +I  +CK G V    ++FR+M  +    D   Y  L++GL 
Sbjct: 156 HVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLC 215

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
              ++ +A  LL ++   G       +N +I GLC+     +  KL +       AP+  
Sbjct: 216 KADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEV 275

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFE 402
           T N L+      G+++    LL +M   K     ++  +   + G  K+ R +    V  
Sbjct: 276 TYNTLIHGLCLKGKLEKAISLLDRMVSSK--CVPNVVTYGTIINGLVKQGRALDGARVLA 333

Query: 403 ELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
            ++ +GY  +  +Y+ L+  L + G+ ++A+ LF +M     E+N++ +S  I      G
Sbjct: 334 LMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDG 393

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
              EA E  +++      P+   Y+ L KG  + G    A+ + +D +        E  Y
Sbjct: 394 KPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKD-MAKHNFTQNEVCY 452

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           ++ I  +C+ G+ ++ + V  +M  +GC P+ V   ++I+G+   G +E+A +++  +  
Sbjct: 453 SVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLC 512

Query: 582 RKLLTEANTIVYDEILIEHMKKKTA 606
           ++  ++ + + Y+ IL+  + K+++
Sbjct: 513 QEPDSQPDVVTYN-ILLNALCKQSS 536



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/418 (22%), Positives = 181/418 (43%), Gaps = 64/418 (15%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G +A + ++++ M    C P+   Y  +I  L  +  L+  + + + M       +V+ 
Sbjct: 252 KGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVT 311

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T+I GL K GR + G  +   M+E G  ++  +Y  LI GL  EGK  +A  L K++ 
Sbjct: 312 YGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMT 371

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 +  +Y+++I GLCR  + D+A ++      +   P+  T + L           
Sbjct: 372 VKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSL----------- 420

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILM 419
                              ++ FFE   G +     A+++++++    ++   + Y++L+
Sbjct: 421 -------------------MKGFFEAGNGHK-----AIEMWKDMAKHNFTQNEVCYSVLI 456

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII--EMS 477
             L + G+VK+A+ ++ +M G   + + +++   I     +G + +A + +N+++  E  
Sbjct: 457 HGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPD 516

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVAS----------------GP 516
             P V  YN L   LCK   I  A+     ML R C  ++ +                  
Sbjct: 517 SQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIFLRTLREKLDPPQDG 576

Query: 517 TEFKYALTI--LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
            EF   L +  L   R   A KI+EV   M Q+  PP     + ++  +C    ++ A
Sbjct: 577 REFLDGLVVRLLKRQRVLGASKIVEV---MLQKLLPPKPSTWTRVVEDLCNPKKVQAA 631



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 161/377 (42%), Gaps = 39/377 (10%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           RI E + +L++M+ + C P    +  +I  L  + +L    ++ + M       + + Y 
Sbjct: 219 RIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYN 278

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TLI GLC  G++ +   L   M  +  + +   YG +I GLV +G+      +L  + + 
Sbjct: 279 TLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEER 338

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           GY  +  +Y+++I GL +  +  +A +LF E+TV++                        
Sbjct: 339 GYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKE------------------------ 374

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL-KGKGYSSVPIYNILMG 420
                 ++  + +S   D        + ++ +   AL+V  E+   +   +   Y+ LM 
Sbjct: 375 -----CELNTIVYSAVID-------GLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMK 422

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              E G   KA+ ++  M   N   N + +S+ I    + G + EA     +++     P
Sbjct: 423 GFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKP 482

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA-SGPTEFKYALTILHVCRSGEAEKIIE 539
            V AY  +  GL   G ++ A+ L  + L     S P    Y + +  +C+     + I+
Sbjct: 483 DVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAID 542

Query: 540 VLNEMTQEGCPPNEVIC 556
           +LN M   GC P+ V C
Sbjct: 543 LLNSMLDRGCDPDLVTC 559


>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
          Length = 579

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/420 (23%), Positives = 188/420 (44%), Gaps = 34/420 (8%)

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
           + Y  +++     R +    +V+EEM++   + D+ AY  L+  L K G V +  ++F +
Sbjct: 129 YTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFED 188

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           MK+   + D   Y +LI      G+  K      ++V  G   +L  +N+II  L + K 
Sbjct: 189 MKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKM 248

Query: 324 FDKAYKLFEVTVQDDLAPD---FSTVNPLLVCCAEMGRMDNFFKLLAQ-MEKLKFSV--- 376
            DK   +    V++D  P+   +S    +L    ++ R++    + ++ M +  +S    
Sbjct: 249 VDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLVK 308

Query: 377 -----------------------AADLEKFFEFL--VGKEERIMMALDVFEELKGKG-YS 410
                                    D + F   L  +   E+ + A+D+   +  KG  +
Sbjct: 309 SLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVT 368

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            V +YN++  AL ++ +V     LF KM+   +  +  +++I I  +   G + +A E  
Sbjct: 369 DVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELF 428

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
             +   S  P V  YN L   L K G++D A ML ++ +      P  F Y++ I    +
Sbjct: 429 EVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKE-MQEKGYDPDVFTYSILIECFGK 487

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           S + E    + +EM  EGC PN V  + ++  + + G  EEA K++  ++++ L+ ++ T
Sbjct: 488 SNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSIT 547



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 168/397 (42%), Gaps = 42/397 (10%)

Query: 108 VTELSKLRRVTPDLVAE--VLKVENNPTLASKFFHWAGK--QKGYKHNFASYNALAYCLS 163
           V E  K +   PD      ++++       SKF  +  +   KG   N  ++N +   L 
Sbjct: 185 VFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALG 244

Query: 164 RNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL---- 219
           +N +                + +++ +L KM  N C+P+ F Y+  + +LA E  L    
Sbjct: 245 KNKM----------------VDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLN 288

Query: 220 ---DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
              D C R    M + +       Y  L+  LCK G     H +F  M  +    DR  +
Sbjct: 289 EVLDICSRF---MNRSI-------YSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAF 338

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
             ++E L    K  +A DLL  + + G   D+G+YN +   L ++KQ      LF+    
Sbjct: 339 VSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKT 398

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERI 394
           + + PD  T N ++     +G +D   +L   ME    S   D+  +   +  +GK   +
Sbjct: 399 NGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEA--SSCKPDVVTYNSLINCLGKHGDL 456

Query: 395 MMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
             A  +F+E++ KGY   V  Y+IL+    +  +V+ A  LF +M       N ++++I 
Sbjct: 457 DEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNIL 516

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           + C    G   EA + +  + +   +P    Y+ L +
Sbjct: 517 LDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILER 553



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/422 (21%), Positives = 172/422 (40%), Gaps = 48/422 (11%)

Query: 200 KPDVFAYTAMIRVLAAER-NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           + D F+Y  ++ +L   R      LR+  +M++D V  ++     L+     G  V R  
Sbjct: 57  RHDAFSYNRILALLFRTRAGPSEALRLVADMERDGVAGNISTINLLVGMGGGGVEVERCL 116

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           EL  +    G+ +    Y  +++  +   +V K   + +++   GY+ D+  YN ++  L
Sbjct: 117 ELASKW---GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDAL 173

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--------- 369
            +    D+A+++FE   Q    PD  T   L+    + GR   F     +M         
Sbjct: 174 AKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNL 233

Query: 370 ----------------EKLKFSVAADLE-----KFFEFLV--------GKEERIMMALDV 400
                           +K+ F ++  +E       F + +        G+  R+   LD+
Sbjct: 234 IAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDI 293

Query: 401 FEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
                 +      IY+ L+ +L + G   +A  +F +M   + + +  +F   ++    +
Sbjct: 294 CSRFMNRS-----IYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNA 348

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
              LEA +  + + E   V  V  YN +   L K+ ++     L  D +      P  F 
Sbjct: 349 EKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLF-DKMKTNGIIPDVFT 407

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           Y + I    R G  +K  E+   M    C P+ V  +++I+ + KHG L+EA  +F  ++
Sbjct: 408 YNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQ 467

Query: 581 ER 582
           E+
Sbjct: 468 EK 469


>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
          Length = 1595

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 119/489 (24%), Positives = 210/489 (42%), Gaps = 59/489 (12%)

Query: 172  DQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK 231
            +++ +L+  Q R  +  ++ ++M       D ++   ++R L  ER ++  L++ E    
Sbjct: 947  NRLLKLLVEQRRWDDARKLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWG 1006

Query: 232  DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
                  V+ Y  LI G C+ G + RG  L  EM+ NG L     YG LI  L  +G + K
Sbjct: 1007 AGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETNGFLPTLVTYGSLINWLGKKGDLEK 1066

Query: 292  ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
               L  ++   G+  ++ IYNS+I  LC  +   +A  + +        PD  T N L+ 
Sbjct: 1067 IGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLIT 1126

Query: 352  CCAEMG---RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKG 406
                 G   + ++F +     E ++  +  +   +   + G   R  +M+A D+  E+ G
Sbjct: 1127 GLCHEGHVRKAEHFLR-----EAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMG 1181

Query: 407  KGYS-SVPIYNILMGALLEIGEVKKALYLFGKM----------------RGL-------- 441
            +G++  V  +  L+  L+  G+V +AL +  KM                 GL        
Sbjct: 1182 RGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPA 1241

Query: 442  -----------NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
                       N++ +   ++  I   + S ++ +A +    +      P + + N + K
Sbjct: 1242 AKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIK 1301

Query: 491  GLCKIGEIDAAMMLVRDCLGN---VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
            G C+ G +  A++    C+ N   V   P EF Y   I    + G     +  L +M + 
Sbjct: 1302 GYCQFGMMSEAIL----CMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKR 1357

Query: 548  GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
             C PN V  S++I+G CK G  + A  +F N++   L    N + Y  ILI  + KK  D
Sbjct: 1358 KCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEAL--SPNVVTY-TILIGSLFKK--D 1412

Query: 608  LVL-SGLKF 615
             VL +GL F
Sbjct: 1413 KVLRAGLYF 1421



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/421 (21%), Positives = 170/421 (40%), Gaps = 53/421 (12%)

Query: 144  KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
            +++G+  N   YN++   L      R+A Q              + IL++M  + C PD+
Sbjct: 1075 RKRGFSPNVQIYNSVIDALCN---CRSATQA-------------MVILKQMFASGCDPDI 1118

Query: 204  FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
              +  +I  L  E ++        E  +  +  + ++Y  LI G C  G ++   +L  E
Sbjct: 1119 ITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVE 1178

Query: 264  MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
            M   G   D   +G LI GLV  GKV +A  + + + +     D+ IYN +I GLC+ + 
Sbjct: 1179 MMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRM 1238

Query: 324  FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
               A  + E  ++ ++ PD                              +F  A  ++ F
Sbjct: 1239 LPAAKNILEEMLEKNVQPD------------------------------EFVYATLIDGF 1268

Query: 384  FEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                  + E +  A  +FE ++ KG    +   N ++    + G + +A+     MR + 
Sbjct: 1269 I-----RSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVG 1323

Query: 443  LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
               +  +++  I  + + G++  A      +I+    P+V  Y+ L  G CK G+ D+A 
Sbjct: 1324 CIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAE 1383

Query: 503  MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
             L  +      S P    Y + I  + +  +  +       M    C PN+V    +++G
Sbjct: 1384 GLFANMQAEALS-PNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNG 1442

Query: 563  M 563
            +
Sbjct: 1443 L 1443


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/464 (23%), Positives = 190/464 (40%), Gaps = 54/464 (11%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           +  G   N A+YN +   L +  +F+ A                 ++ E+M  N  +PD+
Sbjct: 257 RDPGASPNLATYNVMLDGLCKLGMFKEAG----------------DVWERMVANNHQPDM 300

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  MI  L    ++D+  RV+ EM K  +  DV+ Y +L+ G C  GRV    + +  
Sbjct: 301 ITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDS 360

Query: 264 MKENGI-----------------LIDRAI------------------YGVLIEGLVGEGK 288
           M  +GI                 ++D+A                   +  +I GL  +G 
Sbjct: 361 MSVSGIRNVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGF 420

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
             K+  +L++   SG   D   Y+S+I GLC+  + D A KL+E    D   P+    N 
Sbjct: 421 ANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNA 480

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
           L+    +  +  +  ++ +QM +   S            + K E+ + A     E+  KG
Sbjct: 481 LINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKG 540

Query: 409 -YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
               V  Y  L+  L    ++  AL L+ ++    L+ + +  +I I     +G + EA 
Sbjct: 541 CMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEAS 600

Query: 468 ECHNKIIEMSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
           +  +++ E +   P+V  YN L  G  + G  D A  L    L N    P    Y   I 
Sbjct: 601 QLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILEN-GLVPDIISYNTRIK 659

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
            +C      + +++LNEM   G  P  +  + ++  + K+G ++
Sbjct: 660 GLCSCNRTPEGVQLLNEMLASGIIPTAITWNILVRAVIKYGPIQ 703



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/441 (23%), Positives = 203/441 (46%), Gaps = 30/441 (6%)

Query: 155 YNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
           YNAL     RN  F  A +V E +      +  L     M   LCK  +F          
Sbjct: 232 YNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAG------ 285

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
                     VWE M  +  + D++ Y T+I GLC+   V     ++ EM + G++ D  
Sbjct: 286 ---------DVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVV 336

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
           IY  L++G    G+VG+A      +  SG R ++  YN ++ GL      DKA  L+E+ 
Sbjct: 337 IYNSLLKGFCHAGRVGEAWKFWDSMSVSGIR-NVTSYNIMLKGLFDGGMVDKATDLWELL 395

Query: 335 VQDD-LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF-FEFLVG--- 389
            +DD L+PD  T + ++    E G  +   ++L +      +   +L++F +  ++    
Sbjct: 396 EKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEAR----TSGKELDEFSYSSMISGLC 451

Query: 390 KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           K+ R+  A+ ++E++    +  +  IYN L+    +  +   A+ ++ +M   +    ++
Sbjct: 452 KDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTI 511

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           +++  I    ++   LEA     +++E   +  V  Y  L +GLC+  +ID A+ L    
Sbjct: 512 TYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQI 571

Query: 509 LGNVASGPTEFKYALTILH-VCRSGEAEKIIEVLNEMTQE-GCPPNEVICSAIISGMCKH 566
           L       T+      ++H +C +G+ ++  ++L+EM ++  C PN V  + ++ G  + 
Sbjct: 572 LDKGLQ--TDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYET 629

Query: 567 GTLEEARKVFTNLRERKLLTE 587
           G  ++A  ++  + E  L+ +
Sbjct: 630 GCFDKAASLWMAILENGLVPD 650



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 118/481 (24%), Positives = 209/481 (43%), Gaps = 45/481 (9%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQG----RIAEMLEILEKMRRNLC---------- 199
           S+NAL     R   F  AD     + S G    RIA  L+    M R+LC          
Sbjct: 122 SHNALLDAFVRARRFSDADAFFASL-SHGAFGRRIAPNLQTYNIMLRSLCVRGDLDRAVT 180

Query: 200 ----------KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
                      PD   Y+ ++        LD  L + +EM    V+ D + Y  L+ G  
Sbjct: 181 LFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCF 240

Query: 250 KGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           + G   +   ++ ++ ++ G   + A Y V+++GL   G   +A D+ + +V + ++ D+
Sbjct: 241 RNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDM 300

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             Y ++I GLCR    D A +++   ++  L PD    N LL      GR+   +K    
Sbjct: 301 ITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKF--- 357

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYSSVP---IYNILMGALL 423
            + +  S   ++  +   L G  +  M+  A D++E L+ K  S  P    ++ ++  L 
Sbjct: 358 WDSMSVSGIRNVTSYNIMLKGLFDGGMVDKATDLWELLE-KDDSLSPDMVTFSTMIHGLC 416

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           E G   K+L +  + R    E++  S+S  I    + G + +A + + KI   S  P+  
Sbjct: 417 EKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSH 476

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV--- 540
            YN L  G C+  +   A+ +      N  S PT   Y   I  +C+   AEK +E    
Sbjct: 477 IYNALINGFCQASKFSDAIRVYSQMAENDCS-PTTITYNTLIHGLCK---AEKYLEASRF 532

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
             EM ++GC  +     ++I G+C+   ++ A  ++  + ++ L T+   +V   ILI  
Sbjct: 533 TREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTD---VVMHNILIHG 589

Query: 601 M 601
           +
Sbjct: 590 L 590



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 182/410 (44%), Gaps = 19/410 (4%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL----VEADVMAYVTLIMGLCKGGRV 254
           C P V ++ A++      R        +  +        +  ++  Y  ++  LC  G +
Sbjct: 116 CNPGVRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGDL 175

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
            R   LF  ++  G+  DR  Y  L+ G V   ++  A  LL ++     + D   YN++
Sbjct: 176 DRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNAL 235

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLA-PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           +GG  R  +F+KA +++E  V+D  A P+ +T N +L    ++G       +  +M  + 
Sbjct: 236 LGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERM--VA 293

Query: 374 FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKK 430
            +   D+  +   + G  +   +  A  V+ E+   G    V IYN L+      G V +
Sbjct: 294 NNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGE 353

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI-IEMSQVPSVAAYNCLT 489
           A   +  M    +  N  S++I ++   + G + +A +    +  + S  P +  ++ + 
Sbjct: 354 AWKFWDSMSVSGIR-NVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMI 412

Query: 490 KGLCKIGEIDAAMMLVRDCLGNVASGP--TEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
            GLC+ G  + ++ ++ +      SG    EF Y+  I  +C+ G  +  +++  +++ +
Sbjct: 413 HGLCEKGFANKSLQILEEAR---TSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMD 469

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
              PN  I +A+I+G C+     +A +V++ + E        TI Y+ ++
Sbjct: 470 SFKPNSHIYNALINGFCQASKFSDAIRVYSQMAEND--CSPTTITYNTLI 517


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 113/495 (22%), Positives = 212/495 (42%), Gaps = 20/495 (4%)

Query: 104 GPQVVTELSKLRRVTPD--LVAEVLKVENNPTLASKF--FHWAGKQKGYKHNFASYNALA 159
           G  V  EL +  R  PD  +V  V K+         F      GK  G + N  ++  L 
Sbjct: 211 GEIVFGELVRSGRSFPDGEVVGLVAKLGERGVFPDGFKLTQLVGKLCGDQKNGVAWEVL- 269

Query: 160 YCLSRNNLFRAADQVPELMDSQGR---IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE 216
           +C+ R      A     L+   GR   I  M E+L +M +   +P V  +  ++  L   
Sbjct: 270 HCVMRLGGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKA 329

Query: 217 RNLDACLRVWEEMKKDL------VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI- 269
           R +D  L+V++ ++         VE DV+ + TLI GLCK G+   G  L  EMK   I 
Sbjct: 330 RRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNIN 389

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
             +   Y  LI+G    G   +A +L + + + G + ++   N+++ GLC+  +  +A +
Sbjct: 390 RPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVE 449

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG 389
            F       L  + +T   L+     +  ++   +   +M  L    + D   ++  + G
Sbjct: 450 FFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEM--LSSGCSPDAVVYYSLISG 507

Query: 390 K--EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
                R+  A  V  +LK  G+S     YN+L+    +  ++++   L  +M    ++ +
Sbjct: 508 LCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPD 567

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           +++++  I    ++GD   A +   K+I+    PSV  Y  +    C    +D  M +  
Sbjct: 568 TITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFG 627

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
           +        P    Y + I  +CR+ + ++ I ++ +M  +   PN    +AI+ G+   
Sbjct: 628 EMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDK 687

Query: 567 GTLEEARKVFTNLRE 581
             L +A ++   + E
Sbjct: 688 KMLHKAFELMDRMVE 702



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 156/360 (43%), Gaps = 46/360 (12%)

Query: 182 GRIAEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           G+  + L +LE+M+  N+ +P+   Y  +I       N D    ++ +M ++ V+ +V+ 
Sbjct: 371 GKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVIT 430

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             TL+ GLCK GRV R  E F EMK  G+  + A Y  LI    G   + +A    ++++
Sbjct: 431 LNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEML 490

Query: 301 DSG-----------------------------------YRADLGIYNSIIGGLCRVKQFD 325
            SG                                   +  D   YN +I G C+ K+ +
Sbjct: 491 SSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLE 550

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKLKFSVAADLEKF 383
           + Y+L     +  + PD  T N L+    + G      K++ +M  E L+ SV       
Sbjct: 551 RVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAII 610

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVP----IYNILMGALLEIGEVKKALYLFGKMR 439
             +   K   +   + +F E+     S VP    IYNIL+ AL    +V +A+ L   M+
Sbjct: 611 HAYCSKKN--VDEGMKIFGEMCST--SKVPPNTVIYNILIDALCRNNDVDRAISLMEDMK 666

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              +  N+ +++  ++   +   + +A E  ++++E +  P       LT+ L  +GEI+
Sbjct: 667 VKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAVGEIE 726



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 138/352 (39%), Gaps = 71/352 (20%)

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG-LVGEGKV---GKACDLLKDL 299
           L+  L K GR      +  EM +       ++ G ++ G LV  G+    G+   L+  L
Sbjct: 180 LLRVLLKSGRAGDALHVLDEMPQANSGF--SVTGEIVFGELVRSGRSFPDGEVVGLVAKL 237

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            + G   D      ++G LC  ++   A+++    ++   A D ++ N LL        +
Sbjct: 238 GERGVFPDGFKLTQLVGKLCGDQKNGVAWEVLHCVMRLGGAVDAASCNALLTWLGRGRDI 297

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
               +LLA+MEK K                                     SV  + IL+
Sbjct: 298 KRMNELLAEMEKRKIR----------------------------------PSVVTFGILV 323

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L +   + +AL +F ++RG                  + G      E           
Sbjct: 324 NHLCKARRIDEALQVFDRLRG------------------KGGSNWVGVE----------- 354

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKII 538
           P V  +N L  GLCK+G+ +  + L+ +  +GN+ + P    Y   I    ++G  ++  
Sbjct: 355 PDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNI-NRPNTVTYNCLIDGFFKAGNFDRAH 413

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           E+  +M +EG  PN +  + ++ G+CKHG +  A + F  ++ + L   A T
Sbjct: 414 ELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAAT 465



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 23/193 (11%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G K +  +YN L   L +   F  A +V                +EKM +   +P V
Sbjct: 560 EETGVKPDTITYNTLISYLGKTGDFATASKV----------------MEKMIKEGLRPSV 603

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEM-KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
             Y A+I    +++N+D  ++++ EM     V  + + Y  LI  LC+   V R   L  
Sbjct: 604 VTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLME 663

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD------LGIYNSIIG 316
           +MK   +  +   Y  +++G+  +  + KA +L+  +V+   R D      L  + S +G
Sbjct: 664 DMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAVG 723

Query: 317 GLCRVKQFDKAYK 329
            + ++K F + Y+
Sbjct: 724 EIEKLKHFVEGYQ 736


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 204/447 (45%), Gaps = 68/447 (15%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG + E +E+L K+    C+PD+ +Y A+++ L   +        W+++++ +VE     
Sbjct: 191 QGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKR-------WDDVEELMVE----- 238

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
                        +VR HE   +M E+G   D  +Y  +I+G+  +G    A D+L  + 
Sbjct: 239 -------------MVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMP 285

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + ++  YN+++ GLC  +++++A  L     Q+D   D  T N L+    + G +D
Sbjct: 286 SYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVD 345

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
              +LL QM                                  L+      V  Y  ++ 
Sbjct: 346 RVIELLEQM----------------------------------LEHGCIPDVITYTTVIN 371

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G V +A+ L   M     + N++S++I ++    +   ++A E  + +I+   +P
Sbjct: 372 GFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLP 431

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +   +N L   +CK G  + A+ L++  L N  S P    Y+  I  + ++G+ E+ +E+
Sbjct: 432 NPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCS-PDLISYSTVIDGLGKAGKTEEALEL 490

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           LN M  +G  PN +I S++ S + + G  ++  ++F ++++  + ++A   +Y+ ++   
Sbjct: 491 LNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDA--ALYNAVISSL 548

Query: 601 MKKKTADLVLSGLKFFGLESKLKAKGC 627
            K+   D     + FF   + + + GC
Sbjct: 549 CKRWETD---RAIDFF---AYMVSNGC 569



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 164/383 (42%), Gaps = 33/383 (8%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMK-KDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           P+ + Y  ++R L A   +   L V +EM  +       M +V L    C+GG       
Sbjct: 106 PNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVIL-EAACRGGGFRSAVR 164

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
             + +   G  +D     +++  +  +G V +  +LL+ L   G   D+  YN+++ GLC
Sbjct: 165 ALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLC 224

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
             K++D   +L                         M  M    + L+QM   +     D
Sbjct: 225 MAKRWDDVEEL-------------------------MVEMVRVHEALSQMP--EHGCTPD 257

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
           L  +   + G  K+    +A D+   +   G   +V  YN ++  L      ++A  L  
Sbjct: 258 LRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLA 317

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M   +  ++ ++F+I +    ++G +    E   +++E   +P V  Y  +  G CK G
Sbjct: 318 EMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEG 377

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            +D A+ML+++ +      P    Y + +  +CR+       E+++ M Q+GC PN V  
Sbjct: 378 LVDEAVMLLKN-MSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTF 436

Query: 557 SAIISGMCKHGTLEEARKVFTNL 579
           + +I+ MCK G  E+A ++   +
Sbjct: 437 NTLINFMCKKGLAEQAIELLKQM 459



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 117/259 (45%), Gaps = 1/259 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G +  ++E+LE+M  + C PDV  YT +I     E  +D  + + + M     + + ++
Sbjct: 341 NGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTIS 400

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  ++ GLC+  R V   EL   M + G L +   +  LI  +  +G   +A +LLK ++
Sbjct: 401 YTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQML 460

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +G   DL  Y+++I GL +  + ++A +L  V +   + P+    + +    +  GR D
Sbjct: 461 VNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTD 520

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILM 419
              ++   ++       A L       + K      A+D F  +   G   +   Y IL+
Sbjct: 521 KIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILI 580

Query: 420 GALLEIGEVKKALYLFGKM 438
             L   G V++A  L  ++
Sbjct: 581 RGLASEGLVREAQDLLSEL 599



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 145/322 (45%), Gaps = 5/322 (1%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           +IL +M     KP+V  Y  +++ L +    +    +  EM ++    D + +  L+   
Sbjct: 279 DILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFF 338

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C+ G V R  EL  +M E+G + D   Y  +I G   EG V +A  LLK++   G + + 
Sbjct: 339 CQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNT 398

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             Y  ++ GLCR +++  A +L    +Q    P+  T N L+    + G  +   +LL Q
Sbjct: 399 ISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQ 458

Query: 369 MEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
           M  L    + DL  +   +  +GK  +   AL++   +  KG + +  IY+ +  AL   
Sbjct: 459 M--LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSRE 516

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G   K + +F  ++   +  ++  ++  I    +  +   A +    ++    +P+ + Y
Sbjct: 517 GRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTY 576

Query: 486 NCLTKGLCKIGEIDAAMMLVRD 507
             L +GL   G +  A  L+ +
Sbjct: 577 TILIRGLASEGLVREAQDLLSE 598



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/288 (19%), Positives = 124/288 (43%), Gaps = 1/288 (0%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S  R  E  ++L +M +  C  D   +  ++        +D  + + E+M +     DV+
Sbjct: 305 SAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVI 364

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I G CK G V     L + M   G   +   Y ++++GL    +   A +L+  +
Sbjct: 365 TYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHM 424

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +  G   +   +N++I  +C+    ++A +L +  + +  +PD  + + ++    + G+ 
Sbjct: 425 IQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKT 484

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNIL 418
           +   +LL  M     +    +       + +E R    + +F+ ++     S   +YN +
Sbjct: 485 EEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAV 544

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           + +L +  E  +A+  F  M       N  +++I I+     G + EA
Sbjct: 545 ISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREA 592



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 35/193 (18%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
            M  +G   + +E+L++M  N C PD+ +Y+                             
Sbjct: 442 FMCKKGLAEQAIELLKQMLVNGCSPDLISYS----------------------------- 472

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
                 T+I GL K G+     EL   M   GI  +  IY  +   L  EG+  K   + 
Sbjct: 473 ------TVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMF 526

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             + D+  R+D  +YN++I  LC+  + D+A   F   V +   P+ ST   L+   A  
Sbjct: 527 DSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASE 586

Query: 357 GRMDNFFKLLAQM 369
           G +     LL+++
Sbjct: 587 GLVREAQDLLSEL 599



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 141/359 (39%), Gaps = 62/359 (17%)

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
           G+  D  + L  +G  A +  YN++I G CR  Q   A +L        + P+  T  P+
Sbjct: 58  GRTADAARALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAV---PVPPNAYTYFPI 114

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY 409
           +      G + +   +L +M     +    +         +      A+   + L  KG 
Sbjct: 115 VRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGC 174

Query: 410 S-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGD---- 462
           +      N+++ A+ E G V + + L  K+     E + +S++  ++  C  +  D    
Sbjct: 175 TLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEE 234

Query: 463 -ILEACECHNKIIEM--------------------------------SQVPS------VA 483
            ++E    H  + +M                                S++PS      V 
Sbjct: 235 LMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVV 294

Query: 484 AYNCLTKGLCKI-----GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            YN + KGLC        E   A M   DC  +      +  + + +   C++G  +++I
Sbjct: 295 CYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLD------DVTFNILVDFFCQNGLVDRVI 348

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           E+L +M + GC P+ +  + +I+G CK G ++EA  +  N+       + NTI Y  +L
Sbjct: 349 ELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACG--CKPNTISYTIVL 405


>gi|255661034|gb|ACU25686.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 376

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 153/337 (45%), Gaps = 3/337 (0%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI +  E+ E M       +V ++  M+R L     +D  + +WE MKK     D   +
Sbjct: 39  GRIKDCFELWELMGTE-GGQNVISFNIMMRGLFNNGEVDKAISIWELMKKSGFVEDSTTH 97

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G CK G + +   +    +E G +++   Y  +I GL  E K+ KA  +L  ++ 
Sbjct: 98  AILIDGFCKNGYINKSLRVLEIAEEKGGVLNAFAYSAMINGLCREAKLDKAASVLNGMIK 157

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G + +  +YN +I G     +F  A ++F+     D +P   T N L+    +  R   
Sbjct: 158 NGSKPNAHVYNILINGFVGASKFYDAIRVFQEMGSTDCSPTIVTYNTLINGLCKGERFAE 217

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
            + L+ +M +  +             + +  ++ MA+ ++ ++  KG    V ++NIL+ 
Sbjct: 218 AYDLVKEMLEKGWKPCVITYSLLIKGLCQGHKVEMAIQLWNQVISKGLKPDVQMHNILIH 277

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L  +G+ + AL L+  M   N   N ++ +  ++   + GDI  A     +I+     P
Sbjct: 278 GLCSVGKTQLALMLYFDMNRWNCAPNLVTHNTLMEGFYKDGDIRNALVIWARILRNGLQP 337

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
            + +YN   KGLC    I  A + + D L N A  PT
Sbjct: 338 DIVSYNITLKGLCSCNRISFANLFLXDALAN-AIAPT 373



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/337 (19%), Positives = 144/337 (42%), Gaps = 3/337 (0%)

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C    +     +++EM E+ +  D  +Y  ++ G    G++ K C  L +L+ +    ++
Sbjct: 1   CDSEDIDGAERVYKEMVESKMSPDAVVYNAMLNGYFRVGRI-KDCFELWELMGTEGGQNV 59

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             +N ++ GL    + DKA  ++E+  +     D +T   L+    + G ++   ++L  
Sbjct: 60  ISFNIMMRGLFNNGEVDKAISIWELMKKSGFVEDSTTHAILIDGFCKNGYINKSLRVLEI 119

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGE 427
            E+    + A         + +E ++  A  V   +   G   +  +YNIL+   +   +
Sbjct: 120 AEEKGGVLNAFAYSAMINGLCREAKLDKAASVLNGMIKNGSKPNAHVYNILINGFVGASK 179

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
              A+ +F +M   +     ++++  I    +     EA +   +++E    P V  Y+ 
Sbjct: 180 FYDAIRVFQEMGSTDCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSL 239

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L KGLC+  +++ A+ L    +      P    + + I  +C  G+ +  + +  +M + 
Sbjct: 240 LIKGLCQGHKVEMAIQLWNQVISK-GLKPDVQMHNILIHGLCSVGKTQLALMLYFDMNRW 298

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
            C PN V  + ++ G  K G +  A  ++  +    L
Sbjct: 299 NCAPNLVTHNTLMEGFYKDGDIRNALVIWARILRNGL 335



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 74/163 (45%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R AE  +++++M     KP V  Y+ +I+ L     ++  +++W ++    ++ DV  + 
Sbjct: 214 RFAEAYDLVKEMLEKGWKPCVITYSLLIKGLCQGHKVEMAIQLWNQVISKGLKPDVQMHN 273

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI GLC  G+      L+ +M       +   +  L+EG   +G +  A  +   ++ +
Sbjct: 274 ILIHGLCSVGKTQLALMLYFDMNRWNCAPNLVTHNTLMEGFYKDGDIRNALVIWARILRN 333

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           G + D+  YN  + GLC   +   A       + + +AP   T
Sbjct: 334 GLQPDIVSYNITLKGLCSCNRISFANLFLXDALANAIAPTXIT 376


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 178/395 (45%), Gaps = 37/395 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I +  ++L ++      P+V  YT +I     +  ++    ++ EM K  + A+   Y
Sbjct: 177 GEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTY 236

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GL K G   +G E++ +M+E+G+  +   Y  ++  L  +G+   A  +  ++ +
Sbjct: 237 TVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRE 296

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++  YN++IGGLCR  + ++A K+ +    D + P+  T N L+     +G++  
Sbjct: 297 RGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKL-- 354

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
                                      GK      AL +  +LK +G S S+  YNIL+ 
Sbjct: 355 ---------------------------GK------ALSLCRDLKSRGLSPSLVTYNILVS 381

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
                G+   A  +  +M    ++ + ++++I I     S ++ +A +    + E+  VP
Sbjct: 382 GFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVP 441

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  Y+ L  G C  G+++ A  L +  +      P E  Y   IL  C+ G + + +++
Sbjct: 442 DVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCE-PNEVIYNTMILGYCKEGSSYRALKL 500

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           L EM ++   PN      +I  +CK    +EA ++
Sbjct: 501 LKEMEEKELAPNVASYRYMIEVLCKERKSKEAERL 535



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 189/411 (45%), Gaps = 8/411 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P    +  ++  +    + +     + E K  +V  DV ++  LI G C+ G + +  +L
Sbjct: 127 PGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVV-LDVYSFGILIKGCCEAGEIEKSFDL 185

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             E+ E G   +  IY  LI+G   +G++ KA DL  ++   G  A+   Y  +I GL +
Sbjct: 186 LIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFK 245

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
                + ++++E   +D + P+  T N ++    + GR  + F++  +M +    V+ ++
Sbjct: 246 NGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRER--GVSCNI 303

Query: 381 EKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
             +   + G  +E ++  A  V +++K  G + ++  YN L+     +G++ KAL L   
Sbjct: 304 VTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRD 363

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           ++   L  + ++++I +      GD   A +   ++ E    PS   Y  L     +   
Sbjct: 364 LKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDN 423

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           ++ A+ L R  +  +   P    Y++ I   C  G+  +   +   M ++ C PNEVI +
Sbjct: 424 MEKAIQL-RLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYN 482

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY-DEILIEHMKKKTAD 607
            +I G CK G+   A K+   + E++L     +  Y  E+L +  K K A+
Sbjct: 483 TMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAE 533



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 190/412 (46%), Gaps = 9/412 (2%)

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  +I      ++L+  +  + EM  +        +  L+  +       +    F E K
Sbjct: 97  YEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENK 156

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
              +++D   +G+LI+G    G++ K+ DLL +L + G+  ++ IY ++I G C+  + +
Sbjct: 157 SK-VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIE 215

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           KA  LF    +  L  +  T   L+    + G     F++  +M++    V  +L  +  
Sbjct: 216 KAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQED--GVFPNLYTYNC 273

Query: 386 FL--VGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            +  + K+ R   A  VF+E++ +G S ++  YN L+G L    ++ +A  +  +M+   
Sbjct: 274 VMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDG 333

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           +  N ++++  I      G + +A      +      PS+  YN L  G C+ G+   A 
Sbjct: 334 INPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAA 393

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            +V++ +      P++  Y + I    RS   EK I++   M + G  P+    S +I G
Sbjct: 394 KMVKE-MEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHG 452

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK 614
            C  G + EA ++F ++ E+    E N ++Y+ +++ + K+ ++   L  LK
Sbjct: 453 FCIKGQMNEASRLFKSMVEKN--CEPNEVIYNTMILGYCKEGSSYRALKLLK 502



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 16/204 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K +G   +  +YN L     R      A ++ + M+ +G                 KP  
Sbjct: 365 KSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERG----------------IKPSK 408

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT +I   A   N++  +++   M++  +  DV  Y  LI G C  G++     LF+ 
Sbjct: 409 VTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKS 468

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M E     +  IY  +I G   EG   +A  LLK++ +     ++  Y  +I  LC+ ++
Sbjct: 469 MVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERK 528

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVN 347
             +A +L E  +   + P  S ++
Sbjct: 529 SKEAERLVEKMIDSGIDPSTSILS 552


>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 177/393 (45%), Gaps = 2/393 (0%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
            RI +  ++ ++M R    P+ + +  +  V   + ++D      E M+++  E D++ Y
Sbjct: 228 NRIDQCWQVYKEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTY 287

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI   C+ GR+     L+R M    +L D   Y  L+ GL  EGKV +A  L   ++ 
Sbjct: 288 NTLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIH 347

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D+  +N++I G C+  +  ++  L    +   + PD  T   L+    +  R+ +
Sbjct: 348 RGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQVLIEGYRKEARIVS 407

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMG 420
              L+ ++E+    ++ D+  +    + +E R   A  + + +  +GY   V IYN L+ 
Sbjct: 408 ALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQRGYVPGVEIYNKLIE 467

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           +L +   +  AL +  +M   N++ +++++   I C   +   +EA     ++++   +P
Sbjct: 468 SLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEAESLMEEMLQSGMLP 527

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
                  L    CK  +I  A  L++          +E  Y   +   C   +A +++E+
Sbjct: 528 DPDICRALMHVYCKERDIGKAETLLQTFAKEFQIFDSE-SYNTLVKTYCEDADATRLMEL 586

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
            + M + G  PN      +I G+ K   +E+ +
Sbjct: 587 QDRMLKVGFAPNIQTFRQMIHGLWKAMAVEKDK 619



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 107/499 (21%), Positives = 201/499 (40%), Gaps = 77/499 (15%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177
           T ++   +L+ +++   A  FF W     G + +  +Y  L + L+ +  F+ A +    
Sbjct: 91  TDEISRVLLRCQSDSISALTFFSWVKNDLGLQPSIQNYCFLVHILAWSKEFKEAMKF--- 147

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLR--VWEEMKKDLVE 235
                 + E++++++    N    DVF            + L  C +   W+ +  D++ 
Sbjct: 148 ------LTELIKLVKDCSFN---EDVF------------QTLLFCCQDCNWDPVIFDML- 185

Query: 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295
             V AYV       + G +  G   FR++ E G +        L+ GL+   ++ +   +
Sbjct: 186 --VKAYV-------REGMIKEGFTTFRKIVEVGCVPSVISCNCLLNGLLKLNRIDQCWQV 236

Query: 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
            K++   G   +   +N +    C+    DK     E   ++   PD  T N L+ C   
Sbjct: 237 YKEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCR 296

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SV 412
            GR+D+ F L   M   + +V  DL  +   + G  KE ++  A  +F  +  +G +  +
Sbjct: 297 KGRLDDAFYLYRIM--YRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDI 354

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRG--------------------------LNLEVN 446
             +N L+    + G+++++  L  +M G                          LNL V 
Sbjct: 355 VSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQVLIEGYRKEARIVSALNLVVE 414

Query: 447 SLSFSIAIQCHVESGDILEACE---------CHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
              F + I   +    ++  CE            +I +   VP V  YN L + LCK   
Sbjct: 415 LERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQRGYVPGVEIYNKLIESLCKSDS 474

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           I A  +LV+  +G+    P+   Y   I  +CR+  + +   ++ EM Q G  P+  IC 
Sbjct: 475 I-ADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEAESLMEEMLQSGMLPDPDICR 533

Query: 558 AIISGMCKHGTLEEARKVF 576
           A++   CK   + +A  + 
Sbjct: 534 ALMHVYCKERDIGKAETLL 552



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 71/170 (41%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR      +L+++ +    P V  Y  +I  L    ++   L V  EM    ++   + 
Sbjct: 437 EGRPFAAKSLLQRISQRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAIT 496

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI  LC+  R +    L  EM ++G+L D  I   L+     E  +GKA  LL+   
Sbjct: 497 YKALICCLCRTSRSMEAESLMEEMLQSGMLPDPDICRALMHVYCKERDIGKAETLLQTFA 556

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
                 D   YN+++   C      +  +L +  ++   AP+  T   ++
Sbjct: 557 KEFQIFDSESYNTLVKTYCEDADATRLMELQDRMLKVGFAPNIQTFRQMI 606


>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
          Length = 646

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 110/503 (21%), Positives = 221/503 (43%), Gaps = 33/503 (6%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQ-KGYKHNFASYNALAYCLSRNNLFRAA---D 172
           +TP   +E+LK  N+P L+ +FF +       ++HN  +YN L   LS+ +  R +   D
Sbjct: 116 ITPSEASEILKCLNHPHLSLEFFRFCSSNIPKFQHNSFTYNRLLVILSKPSALRDSERLD 175

Query: 173 QVPELMDSQGRI-------------------AEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
            +  ++D   R                    A++    + +++   + + + Y  +++  
Sbjct: 176 LIRAILDDMERCGVRGSISTINILIGIFGGGADVERCFDLVKKWDLQMNCYTYKCLLQAH 235

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
               N +    V+ E+++   + D+ AY  L+  L K  +V + + +F++MK      D 
Sbjct: 236 LRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDE 295

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             Y ++I      GK  ++  L +++ + GY  +L  YN++I  L   +  DK   LF  
Sbjct: 296 YTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSK 355

Query: 334 TVQDDLAPDF---STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--V 388
            V  +++  F   S    L+   +++G      +L   M    F    D + +   L  +
Sbjct: 356 MVV-EVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFCNM--WSFHDEGDRDAYMSMLESL 412

Query: 389 GKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNS 447
               +   ALD+  ++  K  S+  + YN ++ AL ++ +      L+ KM+      + 
Sbjct: 413 CDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDI 472

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
            S++I I     +G + EA +   ++   S  P + ++N L   L K G+ID A M  ++
Sbjct: 473 FSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKE 532

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            +      P    Y+  I    ++ + E    + +EM  EGC PN V  + ++  + + G
Sbjct: 533 -MREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSG 591

Query: 568 TLEEARKVFTNLRERKLLTEANT 590
              EA  ++  L+++ L  ++ T
Sbjct: 592 RTAEAVDLYAKLKQQGLTPDSIT 614



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 16/131 (12%)

Query: 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTA 208
           K +  S+N+L  CL +N                G I E     ++MR     PDV  Y+ 
Sbjct: 504 KPDIISFNSLINCLGKN----------------GDIDEAHMRFKEMREEGLSPDVVTYST 547

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           +I        ++   R+++EM  +    +++ Y  L+  L + GR     +L+ ++K+ G
Sbjct: 548 LIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQG 607

Query: 269 ILIDRAIYGVL 279
           +  D   Y VL
Sbjct: 608 LTPDSITYAVL 618


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 190/408 (46%), Gaps = 19/408 (4%)

Query: 183 RIAEMLEI-LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA--DVM 239
           R ++ ++I L +M +  C P+VF+Y  +++ L  E      L + + M  D  +   DV+
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVV 200

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y T+I G  K G + + +  + EM + GIL +   Y  +I  L     + KA ++L  +
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSM 260

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V +G   +   YNSI+ G C   Q  +A    +    D + PD  T N L+    + GR 
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA-----LDVFEELKGKGYSSVPI 414
               K+   M K    +  ++  +   L G   +  +      LD+   ++   + +  +
Sbjct: 321 TEARKMFDSMTKR--GLKPEITTYGTLLQGYATKGALVEMHGLLDLM--VRNGIHPNHYV 376

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           ++IL+ A  + G+V +A+ +F KMR   L  +++++   I    +SG + +A     ++I
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI 436

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG-- 532
           +    P    YN L   LC   + D A  L+ + L       T F  ++   H C+ G  
Sbjct: 437 DERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSH-CKEGRV 495

Query: 533 -EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            E+EK+ ++   M + G  P+ +  S +I G C  G ++EA K+  ++
Sbjct: 496 IESEKLFDL---MVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASM 540



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 189/419 (45%), Gaps = 16/419 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + EM  +L+ M RN   P+ + ++ +I   A +  +D  + V+ +M++  +  D +
Sbjct: 351 TKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I  LCK GRV      F +M +  +     +Y  LI  L    K  KA +L+ ++
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +D G   D   +NSII   C+  +  ++ KLF++ V+  + PD  T + L+      G+M
Sbjct: 471 LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 530

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           D   KLLA M  +   +  D   +   + G  K  R+  AL +F E++  G S  +  YN
Sbjct: 531 DEATKLLASM--VSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588

Query: 417 ILMGALLEIGEVKKA--LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           I++  L +      A  LY+     G  LE+++ +  +   C     D  EA      + 
Sbjct: 589 IILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTD--EALRMFQNLC 646

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRS 531
                     +N +   L K+G  D A    +D    +++    P    Y+L   ++   
Sbjct: 647 LTDLQLETRTFNIMIGALLKVGRNDEA----KDLFAALSANGLVPDVRTYSLMAENLIEQ 702

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           G  E++ ++   M + GC  N  + ++I+  + + G +  A      + E+    EA+T
Sbjct: 703 GLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEAST 761



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 176/411 (42%), Gaps = 35/411 (8%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G+  E +  L+KM  +  +PDV  Y +++  L          ++++ M K  ++ ++ 
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEIT 340

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TL+ G    G +V  H L   M  NGI  +  ++ +LI     +GKV +A  +   +
Sbjct: 341 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM 400

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   D   Y ++IG LC+  + + A + FE  + + L+P     N L+       + 
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKW 460

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
           D   +L+ +M          L++             + LD               +N ++
Sbjct: 461 DKAKELILEM----------LDRG------------ICLDTI------------FFNSII 486

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            +  + G V ++  LF  M  + ++ + +++S  I  +  +G + EA +    ++ +   
Sbjct: 487 DSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK 546

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P    YN L  G CKI  ++ A++L R+ + +    P    Y + +  + ++       E
Sbjct: 547 PDCVTYNTLINGYCKISRMEDALVLFRE-MESSGVSPDIITYNIILQGLFQTRRTAAAKE 605

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +   +T+ G        + I+ G+CK+   +EA ++F NL    L  E  T
Sbjct: 606 LYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 656



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/372 (20%), Positives = 163/372 (43%), Gaps = 11/372 (2%)

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
           D V  ++  Y  LI   C  GR+  G      + + G  +D   +  L++GL  + +   
Sbjct: 85  DEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSD 144

Query: 292 ACDL-LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD--DLAPDFSTVNP 348
           A D+ L+ +   G   ++  YN ++ GLC   +  +A +L ++   D  D  PD  +   
Sbjct: 145 AMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTT 204

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKG 406
           ++    + G +D  +    +M  L   +  ++  +   +    K + +  A++V   +  
Sbjct: 205 VINGFFKEGDLDKAYGTYHEM--LDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVK 262

Query: 407 KG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G   +   YN ++      G+ K+A+    KM    +E + ++++  +    ++G   E
Sbjct: 263 NGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTE 322

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A +  + + +    P +  Y  L +G    G +   M  + D +      P  + +++ I
Sbjct: 323 ARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL-VEMHGLLDLMVRNGIHPNHYVFSILI 381

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
               + G+ ++ + V ++M Q+G  P+ V    +I  +CK G +E+A + F  + + +L 
Sbjct: 382 CAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERL- 440

Query: 586 TEANTIVYDEIL 597
                IVY+ ++
Sbjct: 441 -SPGNIVYNSLI 451



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 4/126 (3%)

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           A+  L KGLC       AM +V   +  +   P  F Y + +  +C    +++ +E+L  
Sbjct: 128 AFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQM 187

Query: 544 MTQEG--CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
           M  +G  CPP+ V  + +I+G  K G L++A   +  + +R +L   N + Y  I+    
Sbjct: 188 MPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL--PNVVTYSSIIAALC 245

Query: 602 KKKTAD 607
           K +  D
Sbjct: 246 KAQAMD 251


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/467 (22%), Positives = 199/467 (42%), Gaps = 45/467 (9%)

Query: 181 QGRIAEMLEILEKMRRN--LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           + R  E LE+L  M  +   C PDV +Y+ +I     E +LD     + EM    +  +V
Sbjct: 64  ENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNV 123

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + Y ++I  LCK   V +  E+   M ++G++ D   Y  ++ G    G+  +A   LK 
Sbjct: 124 VTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKK 183

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +   G   D+  YNS++  LC+  +  +A K+F+   +  L P+ +T   LL   A  G 
Sbjct: 184 MRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 243

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNI 417
           +     LL  M +        +         K+E++  A+ VF +++ +G + +   Y  
Sbjct: 244 LVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGA 303

Query: 418 LMGALLEIGEVKKALYLFGKM-------------------------------------RG 440
           ++G L + G V+ A+  F +M                                     RG
Sbjct: 304 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 363

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
           + L  N++ F+  I  H + G ++E+ +  + ++ +   P +  Y+ L  G C  G++D 
Sbjct: 364 ICL--NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 421

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A  L+   + +V   P    Y+  I   C+    +  + +  EM   G  P+ +  + I+
Sbjct: 422 ATKLLASMV-SVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIIL 480

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
            G+ +      A++++  + +     E +T  Y+ IL    K K  D
Sbjct: 481 QGLFQTRRTAAAKELYVGITKSGRQLELST--YNIILHGLCKNKLTD 525



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 181/398 (45%), Gaps = 20/398 (5%)

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA--DVMAYVTLIMGLC 249
           E +RR +  PDVF+Y  ++  L  E      L +   M  D  +   DV++Y T+I G  
Sbjct: 42  ELLRRGI--PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFF 99

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K G + + +  + EM +  I  +   Y  +I  L     V KA ++L  +V SG   D  
Sbjct: 100 KEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCM 159

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            YNSI+ G C   Q  +A    +    D + PD  T N L+    + GR     K+   M
Sbjct: 160 TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSM 219

Query: 370 EKLKFSVAADLEKFFEFLVGKEERIMMA-----LDVFEELKGKGYSSVPIYNILMGALLE 424
            K    +  ++  +   L G   +  +      LD+   ++   + +  +++IL+ A  +
Sbjct: 220 TKR--GLKPEITTYGTLLQGYATKGALVEMHGLLDLM--VRNGIHPNHYVFSILVCAYAK 275

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
             +V++A+ +F KMR   L  N++++   I    +SG + +A     ++I+    P    
Sbjct: 276 QEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIV 335

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG---EAEKIIEVL 541
           YN L  GLC   + + A  L+ + L       T F  ++   H C+ G   E+EK+ ++ 
Sbjct: 336 YNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSH-CKEGRVIESEKLFDL- 393

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             M + G  P+ +  S +I G C  G ++EA K+  ++
Sbjct: 394 --MVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASM 429



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 109/474 (22%), Positives = 208/474 (43%), Gaps = 35/474 (7%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------PELMD---------SQGRI 184
           +  G + +  +YN+L   L +N     A ++          PE+           ++G +
Sbjct: 185 RSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGAL 244

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            EM  +L+ M RN   P+ + ++ ++   A +  ++  + V+ +M++  +  + + Y  +
Sbjct: 245 VEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAV 304

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LCK GRV      F +M + G+     +Y  LI GL    K  +A +L+ +++D G 
Sbjct: 305 IGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGI 364

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             +   +NSII   C+  +  ++ KLF++ V+  + PD  T + L+      G+MD   K
Sbjct: 365 CLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATK 424

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGA 421
           LLA M  +   +  D   +   + G  K  R+  AL +F E++  G S  +  YNI++  
Sbjct: 425 LLASM--VSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQG 482

Query: 422 LLEI--GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
           L +       K LY+     G  LE+++ +  +   C  +  D  +A      +  M   
Sbjct: 483 LFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTD--DALRMFQNLCLMDLK 540

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRSGEAEK 536
                +N +   L K+G  D A    +D     +S    P  + Y L   ++   G  E+
Sbjct: 541 LEARTFNIMIDALLKVGRNDEA----KDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEE 596

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           + ++   M   GC  +  + + I+  + + G +  A    + + E+    EA+T
Sbjct: 597 LDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEAST 650



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 95/437 (21%), Positives = 186/437 (42%), Gaps = 43/437 (9%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G+  E +  L+KMR +  +PDV  Y +++  L          ++++ M K  ++ ++ 
Sbjct: 170 SSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEIT 229

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TL+ G    G +V  H L   M  NGI  +  ++ +L+     + KV +A  +   +
Sbjct: 230 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKM 289

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL---LVCCAEM 356
              G   +   Y ++IG LC+  + + A   FE  + + L+P     N L   L  C + 
Sbjct: 290 RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKW 349

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN 416
            R                                EE I+  LD     +G   +++  +N
Sbjct: 350 ER-------------------------------AEELILEMLD-----RGICLNTI-FFN 372

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++ +  + G V ++  LF  M  + ++ + +++S  I  +  +G + EA +    ++ +
Sbjct: 373 SIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSV 432

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              P    Y+ L  G CKI  +  A++L R+ + +    P    Y + +  + ++     
Sbjct: 433 GMKPDCVTYSTLINGYCKISRMKDALVLFRE-MESSGVSPDIITYNIILQGLFQTRRTAA 491

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT--IVYD 594
             E+   +T+ G        + I+ G+CK+   ++A ++F NL    L  EA T  I+ D
Sbjct: 492 AKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMID 551

Query: 595 EILIEHMKKKTADLVLS 611
            +L      +  DL ++
Sbjct: 552 ALLKVGRNDEAKDLFVA 568



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 7/198 (3%)

Query: 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAI 454
           A  VF+EL  +G   V  YNIL+  L +    ++AL L   M   G +   + +S+S  I
Sbjct: 36  ARHVFDELLRRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVI 95

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
               + GD+ +    +N++++    P+V  YN +   LCK   +D AM ++      V S
Sbjct: 96  NGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTM---VKS 152

Query: 515 G--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           G  P    Y   +   C SG+ ++ I  L +M  +G  P+ V  ++++  +CK+G   EA
Sbjct: 153 GVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEA 212

Query: 573 RKVFTNLRERKLLTEANT 590
           RK+F ++ +R L  E  T
Sbjct: 213 RKIFDSMTKRGLKPEITT 230



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 126/294 (42%), Gaps = 6/294 (2%)

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD--DLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           D+  YN ++ GLC   +  +A +L  +   D  D  PD  + + ++    + G +D  + 
Sbjct: 50  DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYS 109

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
              +M   + S            + K + +  A++V   +   G       YN ++    
Sbjct: 110 TYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC 169

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
             G+ K+A+    KMR   +E + ++++  +    ++G   EA +  + + +    P + 
Sbjct: 170 SSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEIT 229

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            Y  L +G    G +   M  + D +      P  + +++ +    +  + E+ + V ++
Sbjct: 230 TYGTLLQGYATKGAL-VEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSK 288

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           M Q+G  PN V   A+I  +CK G +E+A   F  + +  L      IVY+ ++
Sbjct: 289 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGL--SPGNIVYNSLI 340


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 150/343 (43%), Gaps = 41/343 (11%)

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI--DRAIYGVLIEGLVGEGKVGKACD 294
           DV +Y  L+  LC  G+  +   L R M E G +   D   Y  +I+G   EG V KACD
Sbjct: 147 DVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACD 206

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           L K++V  G   DL  YNS++  LC+ +  DKA       V   + P+  T N L+   +
Sbjct: 207 LFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYS 266

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI 414
             G+     ++  +M +   S+  D                                V  
Sbjct: 267 STGQWKEAVRVFKEMRR--HSILPD--------------------------------VVT 292

Query: 415 YNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
            ++LMG+L + G++K+A  +F  M  +G N +V   S++I +  +   G +++  +  + 
Sbjct: 293 LSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDV--FSYNIMLNGYATKGCLVDMTDLFDL 350

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           ++     P    +N   K     G +D AM++  + + +    P    Y   I  +CR G
Sbjct: 351 MLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNE-MRDHGVKPDVVTYRTVIAALCRIG 409

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           + +  +E  N+M  +G  P++   + +I G C HG L + + +
Sbjct: 410 KMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGILLKTQGI 452



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 151/324 (46%), Gaps = 16/324 (4%)

Query: 183 RIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAE---RNLDACLRVWEEMKKDLVEADV 238
           R  E L+IL      L C PDVF+Y  +++ L  +      D  LR+  E    +   DV
Sbjct: 127 RTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAE-GGTVCSPDV 185

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           +AY T+I G  K G V +  +LF+EM + GI  D   Y  ++  L     + KA   L+ 
Sbjct: 186 VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQ 245

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +V+     +   YN++I G     Q+ +A ++F+   +  + PD  T++ L+    + G+
Sbjct: 246 MVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGK 305

Query: 359 MD---NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER--IMMALDVFEELKGKGYS-SV 412
           +    + F  +A   +       D+  +   L G   +  ++   D+F+ + G G +   
Sbjct: 306 IKEARDVFDTMAMKGQ-----NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDF 360

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             +N+ + A    G + KA+ +F +MR   ++ + +++   I      G + +A E  N+
Sbjct: 361 YTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQ 420

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIG 496
           +I+    P   AYNCL +G C  G
Sbjct: 421 MIDQGVAPDKYAYNCLIQGFCTHG 444



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 159/386 (41%), Gaps = 38/386 (9%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
            P  + Y  ++         +  L  + ++ +  +  D +    L+ G C+  R     +
Sbjct: 74  SPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALD 133

Query: 260 -LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY--RADLGIYNSIIG 316
            L     E G + D   Y +L++ L  +GK G+A +LL+ + + G     D+  YN++I 
Sbjct: 134 ILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVID 193

Query: 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
           G  +    +KA  LF+  VQ  + PD  T N ++    +   MD     L QM       
Sbjct: 194 GFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMV------ 247

Query: 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFG 436
                          +R++     +  L   GYSS              G+ K+A+ +F 
Sbjct: 248 --------------NKRVLPNNWTYNNLI-YGYSST-------------GQWKEAVRVFK 279

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +MR  ++  + ++ S+ +    + G I EA +  + +    Q P V +YN +  G    G
Sbjct: 280 EMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKG 339

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            +     L    LG+    P  + + + I      G  +K + + NEM   G  P+ V  
Sbjct: 340 CLVDMTDLFDLMLGD-GIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTY 398

Query: 557 SAIISGMCKHGTLEEARKVFTNLRER 582
             +I+ +C+ G +++A + F  + ++
Sbjct: 399 RTVIAALCRIGKMDDAMEKFNQMIDQ 424



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 106/246 (43%), Gaps = 7/246 (2%)

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL 398
           L+P   T   L+ CC    R +       Q+ +    V A +         + +R   AL
Sbjct: 73  LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEAL 132

Query: 399 DVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMR--GLNLEVNSLSFSIA 453
           D+    +      VP    YNIL+ +L   G+  +A  L   M   G     + ++++  
Sbjct: 133 DILLH-RTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTV 191

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
           I    + GD+ +AC+   ++++    P +  YN +   LCK   +D A   +R  + N  
Sbjct: 192 IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMV-NKR 250

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
             P  + Y   I     +G+ ++ + V  EM +    P+ V  S ++  +CK+G ++EAR
Sbjct: 251 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEAR 310

Query: 574 KVFTNL 579
            VF  +
Sbjct: 311 DVFDTM 316



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 96/228 (42%), Gaps = 25/228 (10%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELM----------------------DSQG 182
           Q+G   +  +YN++ + L +    RA D+    +                       S G
Sbjct: 213 QRGIPPDLVTYNSVVHALCKA---RAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTG 269

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           +  E + + ++MRR+   PDV   + ++  L     +     V++ M       DV +Y 
Sbjct: 270 QWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYN 329

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            ++ G    G +V   +LF  M  +GI  D   + V I+     G + KA  +  ++ D 
Sbjct: 330 IMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDH 389

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
           G + D+  Y ++I  LCR+ + D A + F   +   +APD    N L+
Sbjct: 390 GVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLI 437



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 4/185 (2%)

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH-NKI 473
           Y ILM         + AL  FG++    L V+++  S  ++   E+    EA +   ++ 
Sbjct: 80  YAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRT 139

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILHVCRSG 532
            E+  VP V +YN L K LC  G+   A  L+R    G     P    Y   I    + G
Sbjct: 140 PELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEG 199

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           +  K  ++  EM Q G PP+ V  ++++  +CK   +++A      +  +++L   N   
Sbjct: 200 DVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL--PNNWT 257

Query: 593 YDEIL 597
           Y+ ++
Sbjct: 258 YNNLI 262


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/488 (23%), Positives = 198/488 (40%), Gaps = 98/488 (20%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           ++KG   +  +YN L  AYC                   +G ++E   +++ M     KP
Sbjct: 251 EEKGVYADLVTYNTLVNAYC------------------RRGLVSEAFGLVDCMAGKGLKP 292

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEM---------------------KKDLVEA---- 236
            +F Y A+I  L  E + +   RV +EM                     K+D+ EA    
Sbjct: 293 GLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVF 352

Query: 237 ----------DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
                     D++++ +++    + G + R    F +MK  G++ D  IY +LI G    
Sbjct: 353 NEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRN 412

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
             V  A  +  ++V+ G   D+  YN+++ GLCR K  D A +LF+  V+  + PDF T+
Sbjct: 413 DDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTL 472

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKG 406
             L+    + G M                                     AL +FE +  
Sbjct: 473 TTLIHGYCKDGNMTK-----------------------------------ALSLFETMTL 497

Query: 407 KGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
           +     V  YN LM    ++GE++KA  L+  M    +  + +SFSI I      G + E
Sbjct: 498 RSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSE 557

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYA 522
           A    +++ E    P++   N + KG  + G +  A     D L  + S    P    Y 
Sbjct: 558 AFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKA----NDFLNTMISEGVPPDCITYN 613

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
             I    +    ++   ++N M + G  PN V  +AI+ G  +HG ++EA  V   + ++
Sbjct: 614 TLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDK 673

Query: 583 KLLTEANT 590
            +  + +T
Sbjct: 674 GINPDKST 681



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 180/405 (44%), Gaps = 46/405 (11%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           +E  ++L K  R  C   + A  A++  +     +D   +V+E+  K     +V     +
Sbjct: 174 SEAFQLLRK--RGFC-VSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIM 230

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           +  LCK G++        EM+E G+  D   Y  L+      G V +A  L+  +   G 
Sbjct: 231 VNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGL 290

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV-CCAEMGRMDNFF 363
           +  L  YN++I GLC+   +++A ++ +  +   L P+ +T NP+LV  C          
Sbjct: 291 KPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESC---------- 340

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGAL 422
                                     ++E +  A  VF E+  +G     I ++ ++G  
Sbjct: 341 --------------------------RKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVF 374

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
              GE+ +AL  F KM+G+ L  +++ ++I I  +  + D+  A +  N+++E   V  V
Sbjct: 375 SRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDV 434

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL--HVCRSGEAEKIIEV 540
             YN L  GLC+   +D A  L ++    V  G     Y LT L    C+ G   K + +
Sbjct: 435 VTYNTLLNGLCRGKMLDDADELFKEM---VERGVFPDFYTLTTLIHGYCKDGNMTKALSL 491

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
              MT     P+ V  + ++ G CK G +E+A++++ ++  R++ 
Sbjct: 492 FETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIF 536



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 106/456 (23%), Positives = 194/456 (42%), Gaps = 54/456 (11%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQV-----------------PELMDS--QGRIAE 186
           KG K    +YNAL   L +   +  A +V                 P L++S  +  + E
Sbjct: 288 KGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWE 347

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
              +  +M +    PD+ ++++++ V +    L   L  +E+MK   +  D + Y  LI 
Sbjct: 348 AERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILIN 407

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           G C+   V    ++  EM E G ++D   Y  L+ GL     +  A +L K++V+ G   
Sbjct: 408 GYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFP 467

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D     ++I G C+     KA  LFE      L PD  T N L         MD F K +
Sbjct: 468 DFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTL---------MDGFCK-V 517

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIG 426
            +MEK K       E +++         M++ ++F         S   ++IL+     +G
Sbjct: 518 GEMEKAK-------ELWYD---------MISREIF--------PSYISFSILINGFCSLG 553

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            V +A  L+ +M+   ++   ++ +  I+ ++ +G++ +A +  N +I     P    YN
Sbjct: 554 LVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYN 613

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L     K    D A  L+ + +      P    Y   +    R G  ++   VL++M  
Sbjct: 614 TLINSFVKEENFDRAFFLINN-MEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMID 672

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           +G  P++   +++I+G      ++EA +V   + +R
Sbjct: 673 KGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQR 708



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 164/410 (40%), Gaps = 53/410 (12%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+G   +  S++++    SRN                G +   L   EKM+     PD  
Sbjct: 357 QRGVVPDLISFSSIVGVFSRN----------------GELGRALAYFEKMKGVGLVPDTV 400

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            YT +I       ++   L++  EM +     DV+ Y TL+ GLC+G  +    ELF+EM
Sbjct: 401 IYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEM 460

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            E G+  D      LI G   +G + KA  L + +     + D+  YN+++ G C+V + 
Sbjct: 461 VERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEM 520

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
           +KA +L+   +  ++ P + + + L+     +G +   F+L                   
Sbjct: 521 EKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRL------------------- 561

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIY-NILMGALLEIGEVKKALYLFGKMRGLNL 443
                           ++E+K KG     +  N ++   L  G + KA      M    +
Sbjct: 562 ----------------WDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGV 605

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             + ++++  I   V+  +   A    N + E   +P++  YN +  G  + G +  A M
Sbjct: 606 PPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEM 665

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
           ++   + +    P +  Y   I         ++   V +EM Q G  P++
Sbjct: 666 VLHKMI-DKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPDD 714


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 160/381 (41%), Gaps = 35/381 (9%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           CKP+  ++  ++  L         L V++EM    ++ADV    TLI   C+ G + +  
Sbjct: 43  CKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQAR 102

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L   M  +  ++D   Y  L++ L   G+  KA ++  ++  +G   D  +YN +I  L
Sbjct: 103 RLLHHMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCL 162

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
            +  + D+A +L E   +  + PD  T N ++   +  GR +  +     M++ K S   
Sbjct: 163 GKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHS--- 219

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM 438
                                            V  YN L+  L ++    +A  LF +M
Sbjct: 220 -------------------------------PDVVTYNTLLNGLKKLRRTDEACDLFDEM 248

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
           +      +  +F   I    ++G + +A E   ++++M  VP+   YN L  G C+ G++
Sbjct: 249 QANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQV 308

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D    L +D +   +  P    Y + +L   R G     +E+L EM +EG  P     + 
Sbjct: 309 DKGYELFQDMI-ECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNV 367

Query: 559 IISGMCKHGTLEEARKVFTNL 579
           +I  +   G +E+A  +F  +
Sbjct: 368 LIRSLSMAGQVEDAYTLFKEM 388



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 145/330 (43%), Gaps = 9/330 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  + L + ++M     + DV     +I        L    R+   M       DV  Y 
Sbjct: 62  RATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYS 121

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            L+  L K GR  +  E+F  M++ G + D  +Y VLI  L  +GKV +A +LL+D+   
Sbjct: 122 YLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRK 181

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D   YN +I  L    +++KAY  F +  +   +PD  T N LL    ++ R D  
Sbjct: 182 GIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEA 241

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYSSVP---IYNI 417
             L  +M+  K     DL  F   +  + K  R+  AL+    L   G+  VP   IYN 
Sbjct: 242 CDLFDEMQANK--CMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGH--VPNSYIYNA 297

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+      G+V K   LF  M   +   +S++++I +      G    A E   +++   
Sbjct: 298 LISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREG 357

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
             P++A YN L + L   G+++ A  L ++
Sbjct: 358 HTPALATYNVLIRSLSMAGQVEDAYTLFKE 387



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 133/298 (44%), Gaps = 54/298 (18%)

Query: 155 YNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
           YN L  CL +                QG++ E LE+LE M R    PD   Y  +I VL+
Sbjct: 155 YNVLISCLGK----------------QGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLS 198

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
           +    +     +  MK+     DV+ Y TL+ GL K  R     +LF EM+ N  + D  
Sbjct: 199 SCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLT 258

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
            +G LI+ L   G++  A +    LV  G+  +  IYN++I G CR  Q DK Y+LF+  
Sbjct: 259 TFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDM 318

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI 394
           ++    PD  T   L+                     L FS              +    
Sbjct: 319 IECSCFPDSITYTILV---------------------LGFS--------------RRGHT 343

Query: 395 MMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLS 449
            MA+++ +E+  +G++ ++  YN+L+ +L   G+V+ A  LF +M  +G N ++ + S
Sbjct: 344 SMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYS 401



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 134/312 (42%), Gaps = 3/312 (0%)

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY-RADLGIYNSIIGGLCRVKQFDKAYKL 330
           D   Y  LI G    G   +A D+ + L   G  + +   +++++  LC++ +   A  +
Sbjct: 10  DVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAV 69

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK 390
           F+  +   L  D +  N L+ C   +G +    +LL  M    F +      +    +GK
Sbjct: 70  FQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGK 129

Query: 391 EERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
             R   AL+VF  ++  G      +YN+L+  L + G+V +AL L   M    +  +  +
Sbjct: 130 AGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRT 189

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           ++I I      G   +A      +      P V  YN L  GL K+   D A  L  +  
Sbjct: 190 YNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQ 249

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
            N    P    +   I  + ++G  E  +E    + + G  PN  I +A+ISG C+ G +
Sbjct: 250 ANKCM-PDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQV 308

Query: 570 EEARKVFTNLRE 581
           ++  ++F ++ E
Sbjct: 309 DKGYELFQDMIE 320



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 9/129 (6%)

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
           E C+C          P V AYN L  G CK G+ D A+ + R      +  P    +   
Sbjct: 3   ETCDC---------APDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTL 53

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           ++ +C+   A   + V  EM   G   +  +C+ +I   C+ G L +AR++  ++     
Sbjct: 54  VIFLCKMSRATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAF 113

Query: 585 LTEANTIVY 593
           + +  T  Y
Sbjct: 114 VLDVFTYSY 122



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 88/186 (47%), Gaps = 4/186 (2%)

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGL-NLEVNSLSFSIAIQCHVESGDILEACECH 470
           V  YN L+    + G+  +AL +F +++   + + N++SF   +    +     +A    
Sbjct: 11  VVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVF 70

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
            +++       V   N L    C++G +  A  L+     + A     F Y+  +  + +
Sbjct: 71  QEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAH-AFVLDVFTYSYLMDALGK 129

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +G A K +EV + M + GC P+ V+ + +IS + K G ++EA ++  ++  + ++ +  T
Sbjct: 130 AGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRT 189

Query: 591 --IVYD 594
             IV D
Sbjct: 190 YNIVID 195


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/472 (21%), Positives = 199/472 (42%), Gaps = 47/472 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +  +A  L  L  M R+  +PD + + ++I        +D    ++++M       DV++
Sbjct: 166 RADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVS 225

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI GLC+ GR+    ELF EM +     D  +Y  L++GL    +  +   +L+ + 
Sbjct: 226 YATLIEGLCEAGRIDEAVELFGEMDQP----DMHMYAALVKGLCNAERGEEGLLMLRRMK 281

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G+R     Y +++   CR ++  +A ++ +   +  LAP   T   ++    + GRM 
Sbjct: 282 ELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMS 341

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNI 417
           +  ++L  M KL+     ++  +   + G   E ++  A+ +  +++  G +   + YN+
Sbjct: 342 DALRVLELM-KLR-GCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNL 399

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+      G ++ A  L   M G  L  +  +++  I    + G   +AC   + +    
Sbjct: 400 LIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRG 459

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P+   +N L  GLCK G+ D A   +   + +    P  + Y+  I H+C+   +++ 
Sbjct: 460 IKPNAVTFNSLINGLCKSGKADIAWKFLEKMV-SAGCTPDTYTYSSFIEHLCKMKGSQEG 518

Query: 538 IEVLNEMTQE-----------------------------------GCPPNEVICSAIISG 562
           +  + EM Q+                                   GC P+ V  +  +  
Sbjct: 519 LSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRA 578

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK 614
            C  G L EA  V   + +  +    +T+ Y+ ++  H      D  +S LK
Sbjct: 579 YCIEGRLNEAENVLMEMSKNGV--TVDTMAYNTLMDGHASIGQTDHAVSILK 628



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 112/462 (24%), Positives = 198/462 (42%), Gaps = 37/462 (8%)

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
           RA   V +    + +  E  E+L++M      P V   TA+I     E  +   LRV E 
Sbjct: 290 RAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLEL 349

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           MK    + +V  Y  L+ G C  G+V +   L  +M+  G+  D   Y +LI G   +G 
Sbjct: 350 MKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGH 409

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           +  A  LL+ +   G  AD   YN++I  LC+  + D+A  LF+      + P+  T N 
Sbjct: 410 IESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNS 469

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF------LVGKEERIMMALDVFE 402
           L+    + G+ D  +K L +M  +      D   +  F      + G +E +     + E
Sbjct: 470 LINGLCKSGKADIAWKFLEKM--VSAGCTPDTYTYSSFIEHLCKMKGSQEGLSF---IGE 524

Query: 403 ELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
            L+     S   Y I++  LL+          +G+M       + ++++ +++ +   G 
Sbjct: 525 MLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGR 584

Query: 463 ILEACECHNKIIEMSQ---VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           + EA    N ++EMS+        AYN L  G   IG+ D A+ +++  + +VAS P +F
Sbjct: 585 LNEA---ENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQ-MTSVASVPNQF 640

Query: 520 KYALTILHVCRSGEAEKIIE-----------------VLNEMTQEGCPPNEVICSAIISG 562
            Y + + H+ R    E ++                  + + M +    PN    S+I+ G
Sbjct: 641 TYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEG 700

Query: 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
             + G  EEA  + + ++E  +    N  +Y  ++    K K
Sbjct: 701 FSEDGRTEEATSLVSLMKEDSI--SLNEDIYTALVTCFCKSK 740



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 107/481 (22%), Positives = 196/481 (40%), Gaps = 56/481 (11%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+++ L +LE M+   CKP+V+ Y A+++    E  +   + +  +M+   V  D + 
Sbjct: 337 EGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVT 396

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G C  G +     L R M+ +G++ D+  Y  LI  L  +G+  +AC L   L 
Sbjct: 397 YNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLE 456

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + +   +NS+I GLC+  + D A+K  E  V     PD  T +  +    +M    
Sbjct: 457 TRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQ 516

Query: 361 NFFKLLAQM-------EKLKFSVAAD--LEKFFEFLVGK--------------------- 390
                + +M         + +++     L++    LV +                     
Sbjct: 517 EGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSM 576

Query: 391 -----EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                E R+  A +V  E+   G +     YN LM     IG+   A+ +  +M  +   
Sbjct: 577 RAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASV 636

Query: 445 VNSLSFSIAIQCHVESG---DILEACECH-NKIIEMSQV-------------PSVAAYNC 487
            N  ++ I ++  V      D+L        K IE++ V             P+   Y+ 
Sbjct: 637 PNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSS 696

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           + +G  + G  + A  LV   +   +    E  Y   +   C+S        ++  M Q 
Sbjct: 697 ILEGFSEDGRTEEATSLV-SLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQH 755

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           G  P  +    ++SG+   G  ++A+++F N R +      + IV+  I+   +KK  +D
Sbjct: 756 GFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDY--SPDEIVWKVIIDGLIKKGHSD 813

Query: 608 L 608
           +
Sbjct: 814 I 814



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 174/410 (42%), Gaps = 8/410 (1%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P    Y A+IR L    +L   LR    M +     D   + +LI+G C+  +V    +L
Sbjct: 151 PTAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDL 210

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F +M   G   D   Y  LIEGL   G++ +A +L  ++     + D+ +Y +++ GLC 
Sbjct: 211 FDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEM----DQPDMHMYAALVKGLCN 266

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            ++ ++   +     +    P       ++       +     ++L +M +   +     
Sbjct: 267 AERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVT 326

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
                    KE R+  AL V E +K +G   +V  YN L+      G+V KA+ L  KMR
Sbjct: 327 CTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMR 386

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              +  +++++++ I+     G I  A      +     +     YN L   LCK G  D
Sbjct: 387 ACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTD 446

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A  L  D L      P    +   I  +C+SG+A+   + L +M   GC P+    S+ 
Sbjct: 447 QACSLF-DSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSF 505

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLV 609
           I  +CK    +E       + ++ +  + +T+ Y  ++ + +K++   LV
Sbjct: 506 IEHLCKMKGSQEGLSFIGEMLQKDV--KPSTVNYTIVIHKLLKERNYGLV 553



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 156/360 (43%), Gaps = 28/360 (7%)

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           Y  +I  L     + +A   L  +V SG+R D   +NS+I G CR  Q D A  LF+   
Sbjct: 156 YNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMP 215

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM 395
               A D  +   L+    E GR+D   +L  +M++    + A L K        EE ++
Sbjct: 216 LRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLL 275

Query: 396 MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
           M       +K  G+  S   Y  ++       + K+A  +  +M    L    ++ +  I
Sbjct: 276 M----LRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVI 331

Query: 455 QCHVESGDILEACECHNKIIEMSQV----PSVAAYNCLTKGLCKIGEIDAAMMLV---RD 507
             + + G + +A     +++E+ ++    P+V  YN L +G C  G++  AM L+   R 
Sbjct: 332 NAYCKEGRMSDAL----RVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRA 387

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
           C  N    P    Y L I   C  G  E    +L  M  +G   ++   +A+I+ +CK G
Sbjct: 388 CGVN----PDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDG 443

Query: 568 TLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
             ++A  +F +L  R +  + N + ++ ++    K   AD+     KF     K+ + GC
Sbjct: 444 RTDQACSLFDSLETRGI--KPNAVTFNSLINGLCKSGKADI---AWKFL---EKMVSAGC 495



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 20/201 (9%)

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERN 218
           +S+N +         LMD    I +    + IL++M      P+ F Y  ++R L   R 
Sbjct: 595 MSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRL 654

Query: 219 LDACLR-----VWEE------------MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           ++  L      VW+             MKK+    +   Y +++ G  + GR      L 
Sbjct: 655 VEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLV 714

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             MKE+ I ++  IY  L+       +   A  L+  ++  G+   L  Y  ++ GL   
Sbjct: 715 SLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICE 774

Query: 322 KQFDKAYKLFEVTVQDDLAPD 342
            Q DKA ++F  +   D +PD
Sbjct: 775 GQTDKAKEIFMNSRWKDYSPD 795



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/162 (19%), Positives = 71/162 (43%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + ++  + + M++N   P+   Y++++   + +   +    +   MK+D +  +   Y  
Sbjct: 672 LTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTA 731

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+   CK  R +    L   M ++G +     Y  L+ GL+ EG+  KA ++  +     
Sbjct: 732 LVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKD 791

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           Y  D  ++  II GL +    D + ++  +  + +  P   T
Sbjct: 792 YSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQT 833


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 184/388 (47%), Gaps = 9/388 (2%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +PD+F +T++I        ++  + +  +M +  ++ DV+ Y T+I  LCK G V     
Sbjct: 138 EPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALS 197

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           LF +M+  GI  D  +Y  L+ GL   G+   A  LL+ ++    + D+  +N++I    
Sbjct: 198 LFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFV 257

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +  +   A +L+   +Q  +AP+  T   L+      GR+D   ++   ME        D
Sbjct: 258 KEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETK--GCFPD 315

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFG 436
           +  +   + G  K +++  A+ +F E+  KG +   I Y  L+     +G+   A  +FG
Sbjct: 316 VVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFG 375

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII--EMSQV-PSVAAYNCLTKGLC 493
            M    +  N  ++++ + C   +G + +A      +   E+  V P++  YN L  GLC
Sbjct: 376 HMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLC 435

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE 553
             G+++ A+M+  D +           Y + I  +C++G+ +  + +   +  +G  PN 
Sbjct: 436 YNGKLEKALMVFGD-MQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNV 494

Query: 554 VICSAIISGMCKHGTLEEARKVFTNLRE 581
           V  + +ISG+ + G + EA  +F  ++E
Sbjct: 495 VTYTTMISGLFREGLMLEAHVLFRKMKE 522



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 187/418 (44%), Gaps = 36/418 (8%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVP 175
           T +L+       + P LAS F     K  G++ +  ++ +L   +CL  N +  A   V 
Sbjct: 108 TCNLLMNCFCQSSQPCLASSFLGKLMKL-GFEPDIFTFTSLINGFCLG-NRIEEAMSMVN 165

Query: 176 ELMD------------------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE- 216
           ++++                    G +   L +  +M     +PDV  YT+++  L    
Sbjct: 166 QMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSG 225

Query: 217 --RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
             R+ D  LR    M K  ++ DV+ +  LI    K G+++   EL+ EM +  I  +  
Sbjct: 226 RWRDADLLLR---GMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIF 282

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
            Y  LI GL  EG++ +A  +   +   G   D+  Y S+I G C+ K+ + A K+F   
Sbjct: 283 TYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEM 342

Query: 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEE 392
            Q  L  +  T   L+     +G+ +   ++   M  +   V  ++  +   L  +    
Sbjct: 343 SQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHM--VSRGVPPNIRTYNVLLHCLCYNG 400

Query: 393 RIMMALDVFEELKGKGYSSVP----IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           ++  AL +FE+++ +    VP     YN+L+  L   G+++KAL +FG M+  ++++  +
Sbjct: 401 KVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGII 460

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           +++I IQ   ++G + +A      +      P+V  Y  +  GL + G +  A +L R
Sbjct: 461 TYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFR 518



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/452 (21%), Positives = 192/452 (42%), Gaps = 44/452 (9%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E L++   M  +   P +  +T ++ V+A  +  D  + + + ++   V  D+     L+
Sbjct: 54  EALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLM 113

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              C+  +         ++ + G   D   +  LI G     ++ +A  ++  +V+ G +
Sbjct: 114 NCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIK 173

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLF----------EVTVQDDLA--------------- 340
            D+ IY +II  LC+    D A  LF          +V +   L                
Sbjct: 174 PDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLL 233

Query: 341 ----------PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG- 389
                     PD  T N L+    + G++ +  +L  +M  ++ S+A ++  +   + G 
Sbjct: 234 LRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEM--IQMSIAPNIFTYTSLINGL 291

Query: 390 -KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS 447
             E R+  A  +F  ++ KG +  V  Y  L+    +  +V+ A+ +F +M    L  N+
Sbjct: 292 CMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNT 351

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
           ++++  IQ     G    A E    ++     P++  YN L   LC  G+++ A+M+  D
Sbjct: 352 ITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFED 411

Query: 508 CLGNVASG-PTEFKYALTILH-VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
                  G P   +    +LH +C +G+ EK + V  +M +       +  + II GMCK
Sbjct: 412 MQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCK 471

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            G +++A  +F +L  + +  + N + Y  ++
Sbjct: 472 AGKVKDALNLFCSLPSKGV--KPNVVTYTTMI 501



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 3/155 (1%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK---DLVEADVMAYVTLI 245
           E+   M      P++  Y  ++  L     ++  L ++E+M+K   D V  ++  Y  L+
Sbjct: 372 EVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLL 431

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLC  G++ +   +F +M++  + I    Y ++I+G+   GKV  A +L   L   G +
Sbjct: 432 HGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVK 491

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
            ++  Y ++I GL R     +A+ LF    +D ++
Sbjct: 492 PNVVTYTTMISGLFREGLMLEAHVLFRKMKEDGVS 526



 Score = 45.4 bits (106), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 57/177 (32%)

Query: 132 PTLASKFF-HWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEI 190
           P +A + F H     +G   N  +YN L +CL  N                G++ + L I
Sbjct: 367 PNVAQEVFGHMV--SRGVPPNIRTYNVLLHCLCYN----------------GKVNKALMI 408

Query: 191 LEKMRR---NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM-KKDL------------- 233
            E M++   +   P++  Y  ++  L     L+  L V+ +M K+D+             
Sbjct: 409 FEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQG 468

Query: 234 ---------------------VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
                                V+ +V+ Y T+I GL + G ++  H LFR+MKE+G+
Sbjct: 469 MCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDGV 525


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 182/411 (44%), Gaps = 37/411 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G + + +    +MR+N  +PDV +Y+ +I +L     ++  +  + +M  + +  ++++
Sbjct: 391 HGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIIS 450

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + +LI GLC  G   +  EL  EM   GI  D      +++ L  EG+V +A D    ++
Sbjct: 451 FTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVI 510

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + ++  YN++I G C V + D++ K F+  V   L PD  T N LL    + GR++
Sbjct: 511 HIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVE 570

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
           +   L  +M +      A         + +  RI+ A +++ ++  +G    +  YN ++
Sbjct: 571 DALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVL 630

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
           G L E   V +AL +F  +R    E++  +F+I I   ++ G I EA    + ++    V
Sbjct: 631 GGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPV 690

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P V  Y+ + K   +I E                                  G  E+  +
Sbjct: 691 PHVITYSLMIKS--RIEE----------------------------------GLLEESDD 714

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +   M + GC  +  + + II  + + G +  A    T + E+    EA+T
Sbjct: 715 LFLSMEKNGCAADSHMLNVIIRRLLEKGDVRRAGTYLTKIDEKNFSVEAST 765



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 194/444 (43%), Gaps = 35/444 (7%)

Query: 147 GYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRN---LCKP 201
           GY  +  SYNAL    C+ + +                   E LE+L  M  +    C P
Sbjct: 160 GYTPDVFSYNALIKGLCVEKKS------------------QEALELLLHMTADGGYNCSP 201

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +V +Y+ +I     E  +D    +++EM       DV+ Y +LI GLCK   + +   + 
Sbjct: 202 NVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAIL 261

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           + M + G++ +   Y ++I G    G++ +A  LLK +  SG + D+  Y  +I   C++
Sbjct: 262 QHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKI 321

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKLKFSVAAD 379
            +  +A  +F+  V+    P+ +  + LL   A  G + +   LL  M  + + F     
Sbjct: 322 GRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFE---- 377

Query: 380 LEKFFEFLV---GKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
             + F  L+    K   +  A+  F E++  G    V  Y+ ++  L +IG V+ A+Y F
Sbjct: 378 -HRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHF 436

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M    L  N +SF+  I      G+  +  E   ++I     P     N +   LCK 
Sbjct: 437 NQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKE 496

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G +  A     D + ++   P    Y   I   C  G+ ++ I+  + M   G  P+   
Sbjct: 497 GRVVEAQDFF-DMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWT 555

Query: 556 CSAIISGMCKHGTLEEARKVFTNL 579
            +A+++G  K+G +E+A  ++  +
Sbjct: 556 YNALLNGYFKNGRVEDALALYREM 579



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 126/280 (45%), Gaps = 11/280 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E  +  + +     KP+V +Y  +I        +D  ++ ++ M    +  D   
Sbjct: 496 EGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWT 555

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  L+ G  K GRV     L+REM    +        +++ GL   G++  A +L   +V
Sbjct: 556 YNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMV 615

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D G +  +  YN+++GGLC     D+A ++FE     +   D  T N ++    ++GR+D
Sbjct: 616 DRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRID 675

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL-----DVFEELKGKGYSS-VPI 414
               L + M      +   +     + +  + RI   L     D+F  ++  G ++   +
Sbjct: 676 EAKSLFSAM-----VLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGCAADSHM 730

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
            N+++  LLE G+V++A     K+   N  V + + ++ I
Sbjct: 731 LNVIIRRLLEKGDVRRAGTYLTKIDEKNFSVEASTAALLI 770



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 142/338 (42%), Gaps = 19/338 (5%)

Query: 260 LFREMKENGILI---DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
           LF  M  +G+ +   +R I G+LI      G++  A       +  G+R      N +I 
Sbjct: 78  LFNTMARSGVNMMAANRYIIGILIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQLIK 137

Query: 317 GLCRVKQFDKAYKL-FEVTVQDDLAPDFSTVNPLLV-CCAEMGRMDNFFKLLAQMEKLKF 374
           GLC  K+ D A  + F    +    PD  + N L+   C E    +    LL       +
Sbjct: 138 GLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGY 197

Query: 375 SVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKA 431
           + + ++  +   + G  KE  +  A  +F+E+ G+G+   V  Y+ L+  L +   + KA
Sbjct: 198 NCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKA 257

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
             +   M    +  N+ +++I I+ +   G + EA     K+      P V  Y  L + 
Sbjct: 258 EAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQY 317

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK-----IIEVLNEMTQ 546
            CKIG    A   V D +      P       TI H+   G A K     + ++L+ M +
Sbjct: 318 YCKIGRCAEARS-VFDSMVRKGQKPNS-----TIYHILLHGYATKGALIDVRDLLDLMIR 371

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           +G P      + +I    KHG +++A   FT +R+  L
Sbjct: 372 DGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGL 409



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 475 EMSQVPSVAAYNCLTKGLC--KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           E+   P V +YN L KGLC  K  +    ++L     G     P    Y+  I    + G
Sbjct: 158 ELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEG 217

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           E +K   + +EM  +G PP+ V  S++I G+CK   + +A  +  ++ ++ ++    T
Sbjct: 218 EVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRT 275



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 1/113 (0%)

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+V +Y+ +  G  K GE+D A  L  + +G     P    Y+  I  +C++    K   
Sbjct: 201 PNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQ-GFPPDVVTYSSLIDGLCKAQAMNKAEA 259

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592
           +L  M  +G  PN    + +I G C  G LEEA ++   +    L  +  T +
Sbjct: 260 ILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYI 312


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/439 (23%), Positives = 194/439 (44%), Gaps = 50/439 (11%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           +I + L +   M  + CK D+ AY  +I VL  +  L        E+  + +  +V+ Y 
Sbjct: 407 KIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYT 466

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           ++I   CK G+V    E+F+  +  G   +   Y  LI GL+ + K+ KA  L+  + + 
Sbjct: 467 SIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQED 526

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G    +  Y ++I G C+  +FD A++LFE+  Q+ L PD    N L     + GR +  
Sbjct: 527 GITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEA 586

Query: 363 FKLLAQ----MEKLKFS--------------VAADLEKF-----------FEFLVG---K 390
           +  L +    + K+ ++               AA +EK            +  L+    K
Sbjct: 587 YSFLVKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCK 646

Query: 391 EERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
           ++++  AL + +++  +G   ++  Y I++  +++ G+   A  +F +M     + ++++
Sbjct: 647 QKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAIT 706

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           +++ I  + + G I EA     ++      P V  YN    G   +G +D A   ++  +
Sbjct: 707 YTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMI 766

Query: 510 GNVASGPTEFKYALTILHVCRSGEA----------------EKIIEVLNEMTQEGCPPNE 553
            + +  P  + Y L + H  +   A                + + ++L  M + G  P  
Sbjct: 767 -DASCEPNYWTYWLLLKHFLKMSLANAHYVDTSGMWNWIKLDTVWQLLERMVKHGLNPTA 825

Query: 554 VICSAIISGMCKHGTLEEA 572
           V  S+II+G CK   LEEA
Sbjct: 826 VTYSSIIAGFCKATRLEEA 844



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 180/442 (40%), Gaps = 37/442 (8%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C+ + ++YT +I+ L   R +   L +   M +D    ++  Y  LI GLCK GR+    
Sbjct: 249 CRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDAR 308

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L  EM   G++     Y  +I+G    G++  A  +   +  +G   D   YNS+I GL
Sbjct: 309 VLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGL 368

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C  K  D+A +L    +    +P   T   ++    +  ++D+  ++ + M   K  +  
Sbjct: 369 CGGKP-DEAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDL 427

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
                   ++ K+ R+  A D   E+   G S +V IY  ++ A  ++G+V  AL +F  
Sbjct: 428 QAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKL 487

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
                   N+ ++S  I   ++   + +A     K+ E    P V  Y  L +G CK  E
Sbjct: 488 TEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHE 547

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL---------------- 541
            D A  L  + +      P E  Y +    +C+SG AE+    L                
Sbjct: 548 FDNAFRLF-EMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVKKGVVLTKVTYTSLV 606

Query: 542 ----------------NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
                            +M  EGC  +    S ++  +CK   L EA  +   +  R + 
Sbjct: 607 DGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGV- 665

Query: 586 TEANTIVYDEILIEHMKKKTAD 607
            + N + Y  I+ E +K+   D
Sbjct: 666 -KGNIVAYTIIISEMIKEGKHD 686



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 116/487 (23%), Positives = 206/487 (42%), Gaps = 16/487 (3%)

Query: 131 NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQ-VPELMDSQGRIAEM-- 187
           +P  A  FF W  ++ G++H  AS+ AL   L+R       D+ V  ++   G   +M  
Sbjct: 69  DPATALAFFEWVARRPGFRHTAASHAALLQLLARRRAPANYDKLVVSMISCSGTAEDMRE 128

Query: 188 -LEILEKMRRNLCKPDVFA---YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
            ++ ++ +RR   K    +   Y   +R L      +   +++ ++ ++ +  D + Y T
Sbjct: 129 AVDAIQAIRRAGGKRLALSPKCYNLALRSLLRFDMTEHMGKLYSQLVQEGLLPDTVTYNT 188

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +IM  CK G +   H  FR ++E+G+ +D      L+ G    G + KAC LL  +   G
Sbjct: 189 MIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDLRKACWLLMMMPLMG 248

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            R +   Y  +I GLC  +   +A  L  + +QD  +P+  T   L+    + GR+ +  
Sbjct: 249 CRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDAR 308

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP-IYNILMG 420
            LL +M +    V   +  +   + G  K  R+  AL +   ++G G +     YN L+ 
Sbjct: 309 VLLDEMPRR--GVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIH 366

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L   G+  +A  L             ++F+  I  + ++  I +A    + +I      
Sbjct: 367 GLCG-GKPDEAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKL 425

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            + AY  L   L K   +  A   + +   N  S P    Y   I   C+ G+    +EV
Sbjct: 426 DLQAYGVLISVLIKKHRLKEAKDTLNEIFANGLS-PNVVIYTSIIDAYCKVGKVGAALEV 484

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
                 EGC PN    S++I G+ +   L +A  + T ++E  +      I Y  ++   
Sbjct: 485 FKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGI--TPGVITYTTLIQGQ 542

Query: 601 MKKKTAD 607
            KK   D
Sbjct: 543 CKKHEFD 549



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 177/418 (42%), Gaps = 23/418 (5%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++   LE+ +      C+P+ + Y+++I  L  ++ L   + +  +M++D +   V+ Y
Sbjct: 476 GKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITY 535

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G CK         LF  M++NG+  D   Y VL + L   G+  +A   L   V 
Sbjct: 536 TTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFL---VK 592

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G       Y S++ G  +    + A  L E  V +    D  T + LL    +  +++ 
Sbjct: 593 KGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNE 652

Query: 362 FFKLLAQM--EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
              +L QM    +K ++ A      E +  KE +   A  +F E+   G+  S   Y + 
Sbjct: 653 ALSILDQMTLRGVKGNIVAYTIIISEMI--KEGKHDHAKSMFNEMISSGHKPSAITYTVF 710

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + +  +IG +++A +L G+M    +  + +++++ I      G +  A     ++I+ S 
Sbjct: 711 ISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMIDASC 770

Query: 479 VPSVAAYNCLTKGLCKIG-----EIDAAMMLVRDCLGNVAS----------GPTEFKYAL 523
            P+   Y  L K   K+       +D + M     L  V             PT   Y+ 
Sbjct: 771 EPNYWTYWLLLKHFLKMSLANAHYVDTSGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSS 830

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            I   C++   E+   +L+ M  +   PNE I + +I   C     E+A    TN+ E
Sbjct: 831 IIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFEKAASFVTNMIE 888



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 181/404 (44%), Gaps = 28/404 (6%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV----EA 236
            GR+ + L I   M  N C PD + Y ++I  L   +  +A     EE+    +      
Sbjct: 336 SGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLCGGKPDEA-----EELLNGAIARGFSP 390

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
            V+ +  +I G CK  ++     +   M  +   +D   YGVLI  L+ + ++ +A D L
Sbjct: 391 TVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTL 450

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            ++  +G   ++ IY SII   C+V +   A ++F++T  +   P+  T + L+    + 
Sbjct: 451 NEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQD 510

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVP 413
            ++     L+ +M++    +   +  +   + G  K+     A  +FE ++  G +    
Sbjct: 511 QKLHKAMALITKMQE--DGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQ 568

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN+L  AL + G  ++A Y F   +G+ L    ++++  +    ++G+   A     K+
Sbjct: 569 AYNVLTDALCKSGRAEEA-YSFLVKKGVVL--TKVTYTSLVDGFSKAGNTEFAAALIEKM 625

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHV 528
           +          Y+ L + LCK  +++ A+     M +R   GN+ +      Y + I  +
Sbjct: 626 VNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVA------YTIIISEM 679

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
            + G+ +    + NEM   G  P+ +  +  IS  CK G +EEA
Sbjct: 680 IKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEA 723



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/363 (19%), Positives = 150/363 (41%), Gaps = 25/363 (6%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           ++EKM    CK D   Y+ +++ L  ++ L+  L + ++M    V+ +++AY  +I  + 
Sbjct: 621 LIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMI 680

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           K G+      +F EM  +G       Y V I      G++ +A  L+ ++  +G   D+ 
Sbjct: 681 KEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVV 740

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            YN  I G   +   D A+   +  +     P++ T                ++ LL   
Sbjct: 741 TYNVFINGCGHMGYMDCAFSTLKRMIDASCEPNYWT----------------YWLLLKHF 784

Query: 370 EKLKFSVA--ADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIG 426
            K+  + A   D    + ++     ++     + E +   G +   + Y+ ++    +  
Sbjct: 785 LKMSLANAHYVDTSGMWNWI-----KLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKAT 839

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            +++A  L   M G ++  N   +++ I+C  +     +A      +IE    P + +Y+
Sbjct: 840 RLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFEKAASFVTNMIECGFQPHLESYH 899

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L  GLC  G+ D A  L  D L  +     E  + +    + ++G  +   ++L+ M  
Sbjct: 900 YLITGLCDEGDYDKAKALFCDLL-EMDYNHNEVAWKILNDGLLKAGHVDICSQLLSAMEN 958

Query: 547 EGC 549
             C
Sbjct: 959 RHC 961



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 127/343 (37%), Gaps = 56/343 (16%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q ++ E L IL++M     K ++ AYT +I  +  E   D    ++ EM     +   + 
Sbjct: 647 QKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAIT 706

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y   I   CK GR+     L  EM+ NG+  D   Y V I G    G +  A   LK ++
Sbjct: 707 YTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMI 766

Query: 301 DSG------------------------YRADLGIYN------------------------ 312
           D+                         Y    G++N                        
Sbjct: 767 DASCEPNYWTYWLLLKHFLKMSLANAHYVDTSGMWNWIKLDTVWQLLERMVKHGLNPTAV 826

Query: 313 ---SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
              SII G C+  + ++A  L +  +  D++P+      L+ CC ++   +     +  M
Sbjct: 827 TYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFEKAASFVTNM 886

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIG 426
            +  F     LE +   + G   E     A  +F +L    Y+   + + IL   LL+ G
Sbjct: 887 IECGFQ--PHLESYHYLITGLCDEGDYDKAKALFCDLLEMDYNHNEVAWKILNDGLLKAG 944

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
            V     L   M   +  ++S ++S+      E+  + E+  C
Sbjct: 945 HVDICSQLLSAMENRHCRIDSETYSMVTNNIHEASGMYESYMC 987


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/468 (22%), Positives = 199/468 (42%), Gaps = 64/468 (13%)

Query: 147 GYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           G+  N   +N L   YC   N     A ++ ++M S+  I      L  + +  CK D  
Sbjct: 343 GFNPNVVVFNNLIDGYCKMGN--IEGALKIKDVMISK-NITPTSVTLYSLMQGFCKSDQI 399

Query: 205 --AYTAMIRVLAAERNL--DACLRV--W---------------EEMKKDLVEADVMAYVT 243
             A  A+  +L++  ++  D C  V  W                 + ++   +D++    
Sbjct: 400 EHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLL-LTM 458

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+ GLCK G+ +   EL+  + E G    +     LI GL G GK+ +A  ++K++++ G
Sbjct: 459 LVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERG 518

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
              D   YN++I G C   + +  ++L E   +  + PD  T N LL     +G++D+  
Sbjct: 519 LPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDD-- 576

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGAL 422
                                            A+ +++E K  G  S++  Y I+M   
Sbjct: 577 ---------------------------------AIKLWDEFKASGLISNIHTYGIMMEGY 603

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            +   ++    LF ++    +E+NS+ ++I I+ H ++G++  A +    +     +P+ 
Sbjct: 604 CKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNC 663

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
           A Y+ L  G+C IG ++ A  L+ D +      P    Y   I   C+ G+ +       
Sbjct: 664 ATYSSLIHGVCNIGLVEDAKHLI-DEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWL 722

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           EM      PN+   + +I G CK G +E+A  +   ++E  ++ +  T
Sbjct: 723 EMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVT 770



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/477 (22%), Positives = 210/477 (44%), Gaps = 10/477 (2%)

Query: 160 YCLSRNNLFRAADQVPELMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAE 216
           Y L+R   F +      L+ S  +  E     E+   M    C PDVF++T +I  L   
Sbjct: 198 YLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGAC-PDVFSFTNVINALCKG 256

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
             ++  + ++ +M+K  +  +V+ Y  +I GLC+ GR+    EL  +M   G+  +   Y
Sbjct: 257 GKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTY 316

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
           G LI GL+      K   +L +++ SG+  ++ ++N++I G C++   + A K+ +V + 
Sbjct: 317 GALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMIS 376

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
            ++ P   T+  L+    +  ++++    L ++     S+  D        + K+ R   
Sbjct: 377 KNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHS 436

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A    + +  + +  S  +  +L+  L + G+  +A  L+ ++       + ++ +  I 
Sbjct: 437 AFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIH 496

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
               +G + EA     +++E         YN L  G C  G+++    L R+ +      
Sbjct: 497 GLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRL-REEMTKRGIQ 555

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P  + Y   +  +C  G+ +  I++ +E    G   N      ++ G CK   +E+   +
Sbjct: 556 PDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENL 615

Query: 576 FTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKLLSS 632
           F  L  +K+  E N+IVY+ I+  H +       L  L+   ++SK     C   SS
Sbjct: 616 FNELLSKKM--ELNSIVYNIIIKAHCQNGNVAAALQLLE--NMKSKGILPNCATYSS 668



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 162/370 (43%), Gaps = 3/370 (0%)

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           + RN    D+     +  +    ++L+A   +W  + +    A  +    LI GLC  G+
Sbjct: 445 LSRNFRPSDLLLTMLVCGLCKDGKHLEA-TELWFRLLEKGSPASKVTSNALIHGLCGAGK 503

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
           +     + +EM E G+ +DR  Y  LI G   EGKV     L +++   G + D+  YN 
Sbjct: 504 LPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNF 563

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           ++ GLC V + D A KL++      L  +  T   ++    +  R+++   L  ++   K
Sbjct: 564 LLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKK 623

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKAL 432
             + + +         +   +  AL + E +K KG   +   Y+ L+  +  IG V+ A 
Sbjct: 624 MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAK 683

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
           +L  +MR      N + ++  I  + + G +  A     ++I  +  P+   Y  +  G 
Sbjct: 684 HLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGY 743

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           CK+G ++ A  L+   +      P    Y +     C++ + +   +V ++M  EG P +
Sbjct: 744 CKLGNMEKANNLLIK-MKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVD 802

Query: 553 EVICSAIISG 562
           E+  + ++ G
Sbjct: 803 EITYTTLVHG 812



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 139/321 (43%), Gaps = 34/321 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E   I+++M       D   Y A+I     E  ++ C R+ EEM K  ++ D+  Y
Sbjct: 502 GKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTY 561

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLC  G++    +L+ E K +G++ +   YG+++EG     ++    +L  +L+ 
Sbjct: 562 NFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLS 621

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                +  +YN II   C+      A +L E      + P+ +T + L+     +G +++
Sbjct: 622 KKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVED 681

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
              L+ +M K  F                                    +V  Y  L+G 
Sbjct: 682 AKHLIDEMRKEGF----------------------------------VPNVVCYTALIGG 707

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
             ++G++  A   + +M   N+  N  ++++ I  + + G++ +A     K+ E   VP 
Sbjct: 708 YCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPD 767

Query: 482 VAAYNCLTKGLCKIGEIDAAM 502
           V  YN LT G CK  ++D A 
Sbjct: 768 VVTYNVLTNGFCKANDMDNAF 788



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 129/282 (45%), Gaps = 11/282 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G++     + E+M +   +PD++ Y  ++R L     LD  +++W+E K   + +++ 
Sbjct: 535 NEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIH 594

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  ++ G CK  R+     LF E+    + ++  +Y ++I+     G V  A  LL+++
Sbjct: 595 TYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENM 654

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   +   Y+S+I G+C +   + A  L +   ++   P+      L+    ++G+M
Sbjct: 655 KSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQM 714

Query: 360 DNFFKLLAQMEKL-----KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVP 413
           D       +M        KF+    ++ + +  +G  E+   A ++  ++K  G    V 
Sbjct: 715 DTAESTWLEMISFNIHPNKFTYTVMIDGYCK--LGNMEK---ANNLLIKMKESGIVPDVV 769

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
            YN+L     +  ++  A  +  +M    L V+ ++++  + 
Sbjct: 770 TYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVH 811



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 7/167 (4%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           N  S   L  C + ++L      +       G + +   ++++MR+    P+V  YTA+I
Sbjct: 653 NMKSKGILPNCATYSSLIHGVCNI-------GLVEDAKHLIDEMRKEGFVPNVVCYTALI 705

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
                   +D     W EM    +  +   Y  +I G CK G + + + L  +MKE+GI+
Sbjct: 706 GGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIV 765

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
            D   Y VL  G      +  A  +   +   G   D   Y +++ G
Sbjct: 766 PDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 812


>gi|255661024|gb|ACU25681.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 376

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 171/374 (45%), Gaps = 18/374 (4%)

Query: 142 AGKQKGYKHNF---ASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNL 198
           +G ++ YK       S +A+ Y    N  FR+            RI +  E+ + M R  
Sbjct: 7   SGAERVYKEMVERKVSPDAVVYNTMLNGFFRSQ-----------RIKDCFELWDLMGREG 55

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
            +  V ++  ++R L     +D  + +WE MK+     D   Y  L+ G CK G   +  
Sbjct: 56  SRT-VASFNIIMRGLFDNGKVDEAVSIWELMKESGFVEDSTTYGILVHGFCKNGHNNKSL 114

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            +    ++ G ++D   Y  +I GL  E K+ KA  +L  + ++G + +  +YNS+I GL
Sbjct: 115 HVLEIAEQKGGVLDAFAYSAMINGLCKEAKLDKAISVLNSMTNNGCKPNAHVYNSLINGL 174

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
               +++ A   F+     D +P   T N L+    +  R    + L+ QM +  F+ + 
Sbjct: 175 VGASKYEDAICAFQEMGNMDCSPTIVTYNXLINGLCKGERYAEAYDLVKQMLEKGFNPSV 234

Query: 379 -DLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
                 F+ L  +  ++ MAL +++++  KG+   V ++NIL+  L  +G+++ AL L+ 
Sbjct: 235 ITYSSLFKGLC-QGRKVEMALQLWKKVISKGFKPDVQMHNILIHGLCNVGKIELALALYF 293

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            M       N ++ +  ++   + GD+        +I+     P + +YN   KGLC   
Sbjct: 294 GMNRWKCSPNLVTLNTLMEGFYKDGDVRSGLVIWARILRNELKPDIISYNITLKGLCSCN 353

Query: 497 EIDAAMMLVRDCLG 510
            I  A++ + D LG
Sbjct: 354 RISGAVLFLHDALG 367



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 4/164 (2%)

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           +YN ++        +K    L+  M G        SF+I ++   ++G + EA      +
Sbjct: 27  VYNTMLNGFFRSQRIKDCFELWDLM-GREGSRTVASFNIIMRGLFDNGKVDEAVSIWELM 85

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE-FKYALTILHVCRSG 532
            E   V     Y  L  G CK G  + ++ ++   +     G  + F Y+  I  +C+  
Sbjct: 86  KESGFVEDSTTYGILVHGFCKNGHNNKSLHVLE--IAEQKGGVLDAFAYSAMINGLCKEA 143

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           + +K I VLN MT  GC PN  + +++I+G+      E+A   F
Sbjct: 144 KLDKAISVLNSMTNNGCKPNAHVYNSLINGLVGASKYEDAICAF 187



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 64/336 (19%), Positives = 130/336 (38%), Gaps = 38/336 (11%)

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C+ G +     +++EM E  +  D  +Y  ++ G     ++ K C  L DL+       +
Sbjct: 1   CELGDISGAERVYKEMVERKVSPDAVVYNTMLNGFFRSQRI-KDCFELWDLMGREGSRTV 59

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             +N I+ GL    + D+A  ++E+  +     D +T   L+    + G  +    +L  
Sbjct: 60  ASFNIIMRGLFDNGKVDEAVSIWELMKESGFVEDSTTYGILVHGFCKNGHNNKSLHVLEI 119

Query: 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGE 427
            E+    + A         + KE ++  A+ V   +   G   +  +YN L+  L+   +
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEAKLDKAISVLNSMTNNGCKPNAHVYNSLINGLVGASK 179

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
            + A+  F +M  ++                                     P++  YN 
Sbjct: 180 YEDAICAFQEMGNMDCS-----------------------------------PTIVTYNX 204

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L  GLCK      A  LV+  L      P+   Y+     +C+  + E  +++  ++  +
Sbjct: 205 LINGLCKGERYAEAYDLVKQML-EKGFNPSVITYSSLFKGLCQGRKVEMALQLWKKVISK 263

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
           G  P+  + + +I G+C  G +E A  ++  +   K
Sbjct: 264 GFKPDVQMHNILIHGLCNVGKIELALALYFGMNRWK 299



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 70/163 (42%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R AE  +++++M      P V  Y+++ + L   R ++  L++W+++     + DV  + 
Sbjct: 214 RYAEAYDLVKQMLEKGFNPSVITYSSLFKGLCQGRKVEMALQLWKKVISKGFKPDVQMHN 273

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI GLC  G++     L+  M       +      L+EG   +G V     +   ++ +
Sbjct: 274 ILIHGLCNVGKIELALALYFGMNRWKCSPNLVTLNTLMEGFYKDGDVRSGLVIWARILRN 333

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
             + D+  YN  + GLC   +   A       +  ++ P   T
Sbjct: 334 ELKPDIISYNITLKGLCSCNRISGAVLFLHDALGKNIFPTVIT 376


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 184/403 (45%), Gaps = 35/403 (8%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+ +  +  ++KM    C+P+V +Y+ +I  L   R ++  + ++  M+   +   V+ Y
Sbjct: 223 GKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTY 282

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +LI G+C  G+  +   LF+EM E  +  D   + +L++ L  EG V +A  +   ++ 
Sbjct: 283 NSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQ 342

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                D+  Y+S+I G+C+   + ++  L    +  ++ PD  T                
Sbjct: 343 IAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVT---------------- 386

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
                       FS+  D+  F +  +  E + ++ L +   L+     +V  YN LM  
Sbjct: 387 ------------FSIWVDV--FCKKGMVSEAQSIINLMIERGLR----PNVVTYNSLMDG 428

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
                ++ +A  +F  M       + LS++I I+ + +S  I EA +  +++      P+
Sbjct: 429 YCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPN 488

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
              +  L  GLC+ G   AA  L +  +G+    P    Y+  +   C+ G  ++ + + 
Sbjct: 489 SITHTTLISGLCQAGRPYAAKELFKK-MGSHGCPPDLITYSTLLSGFCKHGHLDEALALF 547

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
             + +    PN VIC  ++ GMCK G LE+A+++F++L   +L
Sbjct: 548 EALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEEL 590



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 92/404 (22%), Positives = 175/404 (43%), Gaps = 14/404 (3%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
             +L K+ +   KP +  +  +I  L  E  +   +   + +     +  V  +  ++ G
Sbjct: 159 FSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNG 218

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK G+        ++M E     +   Y ++I+ L     V +A DL   +   G    
Sbjct: 219 LCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPT 278

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  YNS+I G+C   Q+ +A  LF+  ++ ++ PD  T + L+    + G +     +  
Sbjct: 279 VVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFG 338

Query: 368 QMEKLKFSVAADLEKFFEFLVG-------KEERIMMALDVFEELKGKGYSSVPIYNILMG 420
           +M  ++ ++  D+  +   + G       KE   ++     E L       V  ++I + 
Sbjct: 339 KM--IQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLN----EMLSRNIRPDVVTFSIWVD 392

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G V +A  +   M    L  N ++++  +  +     + EA +  + ++     P
Sbjct: 393 VFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAP 452

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V +YN L KG CK   ID A  L  D + +    P    +   I  +C++G      E+
Sbjct: 453 DVLSYNILIKGYCKSERIDEAKQLF-DEMSHKGLTPNSITHTTLISGLCQAGRPYAAKEL 511

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
             +M   GCPP+ +  S ++SG CKHG L+EA  +F  L++ +L
Sbjct: 512 FKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQL 555



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 168/378 (44%), Gaps = 39/378 (10%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P +  +  ++  L   ++ D+ + ++ +M+   V   V     LI  LC    V  G  +
Sbjct: 102 PCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSV 161

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             ++ + G       +  LI GL  EG++ +A + L  ++  GY+  +  +  I+ GLC+
Sbjct: 162 LGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCK 221

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           + +   A    +  V+ D  P                            E + +S+  D 
Sbjct: 222 IGKTSAAIVWMKKMVELDCEP----------------------------EVVSYSIIID- 252

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
                  + K   +  A+D+F  ++  G S +V  YN L+  +   G+ K+A  LF +M 
Sbjct: 253 ------SLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEML 306

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
             N++ + ++FSI +    + G +LEA     K+I+++  P +  Y+ L  G+CK     
Sbjct: 307 EWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWK 366

Query: 500 AAMMLVRDCLG-NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
            +  L+ + L  N+   P    +++ +   C+ G   +   ++N M + G  PN V  ++
Sbjct: 367 ESSTLLNEMLSRNIR--PDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNS 424

Query: 559 IISGMCKHGTLEEARKVF 576
           ++ G C H  ++EARKVF
Sbjct: 425 LMDGYCLHSQMDEARKVF 442



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 151/367 (41%), Gaps = 58/367 (15%)

Query: 138 FFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRN 197
           F+H   +  G      +YN+L Y +  +  ++ A  +           EMLE       N
Sbjct: 267 FYHM--RSIGISPTVVTYNSLIYGMCNSGQWKQASIL---------FKEMLE------WN 309

Query: 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
           + KPDV  ++ ++  L  E  +   L V+ +M +  +E D++ Y +LI G+CK       
Sbjct: 310 M-KPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKES 368

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
             L  EM    I  D   + + ++    +G V +A  ++  +++ G R ++  YNS++ G
Sbjct: 369 STLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDG 428

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQMEKLKFS 375
            C   Q D+A K+F++ V    APD  + N L+   C                       
Sbjct: 429 YCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYC----------------------- 465

Query: 376 VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYL 434
                         K ERI  A  +F+E+  KG +   I +  L+  L + G    A  L
Sbjct: 466 --------------KSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKEL 511

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           F KM       + +++S  +    + G + EA      + +    P+      L  G+CK
Sbjct: 512 FKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCK 571

Query: 495 IGEIDAA 501
            G+++ A
Sbjct: 572 AGKLEDA 578



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 20/200 (10%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           ++G + N  +YN+L   YCL  ++    A +V ++M ++G                C PD
Sbjct: 412 ERGLRPNVVTYNSLMDGYCL--HSQMDEARKVFDIMVNKG----------------CAPD 453

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V +Y  +I+       +D   ++++EM    +  + + + TLI GLC+ GR     ELF+
Sbjct: 454 VLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFK 513

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           +M  +G   D   Y  L+ G    G + +A  L + L  S  + +  I   ++GG+C+  
Sbjct: 514 KMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAG 573

Query: 323 QFDKAYKLFEVTVQDDLAPD 342
           + + A +LF     ++L PD
Sbjct: 574 KLEDAKELFSSLSIEELQPD 593


>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
          Length = 726

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 124/519 (23%), Positives = 215/519 (41%), Gaps = 66/519 (12%)

Query: 89  ARFITDAFRKNQFQ--WGPQVVTELSKLRRV-TPDLVAEVLKVENNPTL--ASKFFHWAG 143
           +R + D  R  + +  W P++  +L +L RV +P  V  VL+ +    +  A +FF WA 
Sbjct: 59  SRLVRDTCRLLELRESWSPKLEAQLRQLLRVLSPPQVRAVLRAQARGDVRRAFEFFRWAD 118

Query: 144 KQKGYKHNFASYNALAYCLS----------------RNNLFRAADQVPELMDS---QGRI 184
           +Q  Y+H    ++ +   LS                R  + R  +Q  +LM S    G++
Sbjct: 119 RQWRYRHAPEVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKL 178

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
              + +L  M+++ C PD+      + VL     +D  L   E M++  VE DV  Y  L
Sbjct: 179 RSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCL 238

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLC   RVV   E+   M +NG   D+  Y  ++  L  E +V +   LL+ +     
Sbjct: 239 IKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRM----- 293

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           R D G++                             PD  T N L+   A+ G  D   +
Sbjct: 294 RNDAGLF-----------------------------PDQVTYNVLIHGLAKHGHADEALE 324

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGK---EERIMMALDVFEELKGKGYS-SVPIYNILMG 420
            L + E  +F V    E  +  +V       R+  A ++  E+  KG    V  Y+ ++ 
Sbjct: 325 FLRESEGKRFRVD---EVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVD 381

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
               IGE+ +A  +   M   + + N+++ +  +    + G   EA E  NK  E    P
Sbjct: 382 GFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTP 441

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           S   Y+ +  G  + G++  +  +V   L      PT  +  L I  +C+  +  +  + 
Sbjct: 442 SDITYSVVMHGFRREGKLKESCDVVVQMLQK-GFFPTTVEINLLIHALCKDRKPAEAKDF 500

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           + +   +GC  N V  + +I G  + G LE A  +  ++
Sbjct: 501 MEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDM 539



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 141/325 (43%), Gaps = 38/325 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+AE  EI+ +M    C+PDV  Y+ ++        LD   ++ + M K+  + + + +
Sbjct: 352 GRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTH 411

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLCK G+     EL  + +E         Y V++ G   EGK+ ++CD++  ++ 
Sbjct: 412 TALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQ 471

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G+       N +I  LC+ ++  +A    E            T+N +           N
Sbjct: 472 KGFFPTTVEINLLIHALCKDRKPAEAKDFME-----QCQSKGCTINVV-----------N 515

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELK-GKGYSSVPIYNILMG 420
           F  ++       FS   DLE               AL + +++     +  V  Y +++ 
Sbjct: 516 FTTVIH-----GFSRQGDLES--------------ALSLMDDMYLSNRHPDVVTYTVVVD 556

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           AL + G +K+A  L  KM    +    +++   I  + E G++ +      K++   ++ 
Sbjct: 557 ALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKGNLEDLLNLLEKMLARQEMK 616

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLV 505
           S  AYN + + LC  G+++ A  L+
Sbjct: 617 S--AYNQVVEKLCAFGKLNEAYSLL 639


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/458 (23%), Positives = 205/458 (44%), Gaps = 43/458 (9%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G + N  +YN+L Y L ++                 ++ + + +L KM+++   P+V
Sbjct: 489 ERDGCQPNAWTYNSLMYGLVKDK----------------KLHKAMALLTKMQKDGIIPNV 532

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT +++    E + D   R++E M+++ ++ D  AY  L   LCK GR     E +  
Sbjct: 533 ITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGR---AEEAYSF 589

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +   G+ + +  Y  LI+G    G    A  L++ ++D G   D   Y+ ++  LC+ K+
Sbjct: 590 IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKR 649

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM---GRMDNFFKLLAQMEKLKFSVAADL 380
            ++A  + +   Q  L     T+    +   EM   G+ D+  ++  +M       +A  
Sbjct: 650 LNEALPILD---QMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATT 706

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
              F     KE R+  A D+  +++ +G +  V  YNIL+     +G + +A     +M 
Sbjct: 707 YTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMV 766

Query: 440 GLNLEVNSLSFSIAIQ-------CHVESGD------ILE---ACECHNKIIEMSQVPSVA 483
           G + E N  ++ + ++        +V S D      ++E     +   ++++    P+V 
Sbjct: 767 GASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVT 826

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            Y+ L  G CK G ++ A +L+    G   S P E  Y L I   C +   EK +  ++ 
Sbjct: 827 TYSSLIAGFCKAGRLEEACLLLDHMCGKGLS-PNEDIYTLLIKCCCDTKFFEKALSFVSI 885

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           M++ G  P       ++ G+C  G  E+ + +F +L E
Sbjct: 886 MSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLE 923



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 200/463 (43%), Gaps = 57/463 (12%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C+ + ++YT +I+ L   + +   L ++  MK+D    +V A+  LI GLCK GRV    
Sbjct: 249 CQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDAR 308

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            LF  M +NG++     Y  +I G    G++  A  + + +  +G   D   YN++I GL
Sbjct: 309 LLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGL 368

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQMEKLKFSV 376
           C  K  ++A +L    V++   P   T   L+   C AE  + D+  ++  +M   K  +
Sbjct: 369 CDQKT-EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAE--KFDDALRMKNKMMSSKCKL 425

Query: 377 AADLEKFFEFL--VGKEERIMMALDVFEELKGKG-------YSSVP-------------- 413
             DL+ F + +  + K++R+  A ++  E+   G       Y+S+               
Sbjct: 426 --DLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALE 483

Query: 414 ---------------IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV 458
                           YN LM  L++  ++ KA+ L  KM+   +  N ++++  +Q   
Sbjct: 484 VLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQC 543

Query: 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-MLVRDCLGNVASGPT 517
           +  D   A      + +    P   AY  LT  LCK G  + A   +VR          T
Sbjct: 544 DEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRK-----GVALT 598

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF- 576
           +  Y   I    ++G  +    ++  M  EGC P+    S ++  +CK   L EA  +  
Sbjct: 599 KVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILD 658

Query: 577 -TNLRERKLLTEANTIVYDEILIE----HMKKKTADLVLSGLK 614
             +LR  K    A TI+ DE+L E    H K+   ++  SG K
Sbjct: 659 QMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHK 701



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 116/522 (22%), Positives = 217/522 (41%), Gaps = 64/522 (12%)

Query: 117 VTPDLVAEVLKVENN---PTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQ 173
           VT   VA++ + ++    P  A  FF W  ++ G++H   S+ AL + LSR    RA  Q
Sbjct: 52  VTAAHVADLFRADSTAPEPATALAFFEWLARRDGFRHTADSHAALLHLLSRR---RAPAQ 108

Query: 174 VPELMDSQGRIAEMLE-------ILEKMRRNLCKPDVFA---YTAMIRVLAAERNLDACL 223
              L+ S    ++  E        ++ +RR        +   Y   +R LA     +   
Sbjct: 109 YERLVVSMLNCSDTAEDMRVSADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMG 168

Query: 224 RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
           RV+ ++ +D +  D + Y T+I   CK G +   H  FR + E G+  +      L+ G 
Sbjct: 169 RVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGY 228

Query: 284 VGEGKVGKAC-------------------DLLKDLVDS----------------GYRADL 308
              G++ KAC                    L++ L D+                G   ++
Sbjct: 229 CRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNV 288

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             +  +I GLC+  +   A  LF+   Q+ + P   T N ++V  +++GRM++  K+   
Sbjct: 289 RAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKEL 348

Query: 369 MEKLKFSVAADLEKFFEFLVGK-EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
           ME  K     D   +   + G  +++   A ++      +G++ +V  +  L+       
Sbjct: 349 ME--KNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAE 406

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
           +   AL +  KM     +++   F   I   ++   + EA E  N+I     VP+V  Y 
Sbjct: 407 KFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYT 466

Query: 487 CLTKGLCKIGEIDAAM----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
            +  G CK G++D A+    M+ RD        P  + Y   +  + +  +  K + +L 
Sbjct: 467 SIIDGYCKSGKVDIALEVLKMMERD-----GCQPNAWTYNSLMYGLVKDKKLHKAMALLT 521

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           +M ++G  PN +  + ++ G C     + A ++F  + +  L
Sbjct: 522 KMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGL 563



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 102/425 (24%), Positives = 192/425 (45%), Gaps = 21/425 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA----D 237
           GR+ + L+I E M +N C PD + Y  +I  L  ++  +A     EE+  + V+      
Sbjct: 337 GRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEA-----EELLNNAVKEGFTPT 391

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ +  LI G C   +      +  +M  +   +D  ++G LI  L+ + ++ +A +LL 
Sbjct: 392 VVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLN 451

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           ++  +G   ++  Y SII G C+  + D A ++ ++  +D   P+  T N L+    +  
Sbjct: 452 EISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDK 511

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPI 414
           ++     LL +M+K    +  ++  +   L G+  E     A  +FE ++  G       
Sbjct: 512 KLHKAMALLTKMQK--DGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHA 569

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y +L  AL + G  ++A Y F   +G+ L    + ++  I    ++G+   A     ++I
Sbjct: 570 YAVLTDALCKAGRAEEA-YSFIVRKGVAL--TKVYYTTLIDGFSKAGNTDFAATLIERMI 626

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           +    P    Y+ L   LCK   ++ A+ ++ D +       T F Y + I  + R G+ 
Sbjct: 627 DEGCTPDSYTYSVLLHALCKQKRLNEALPIL-DQMSLRGIKCTIFAYTILIDEMLREGKH 685

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           +    + NEMT  G  P+    +  I+  CK G LE+A  +   +    +   A  +V  
Sbjct: 686 DHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGV---APDVVTY 742

Query: 595 EILIE 599
            ILI+
Sbjct: 743 NILID 747



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 136/335 (40%), Gaps = 21/335 (6%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           ++E+M    C PD + Y+ ++  L  ++ L+  L + ++M    ++  + AY  LI  + 
Sbjct: 621 LIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEML 680

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           + G+      ++ EM  +G       Y V I     EG++  A DL+  +   G   D+ 
Sbjct: 681 REGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVV 740

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL----------VCCAEMGRM 359
            YN +I G   +   D+A+   +  V     P++ T   LL          V   +   M
Sbjct: 741 TYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGM 800

Query: 360 DNF------FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS- 410
            N       ++LL +M  +K  +   +  +   + G  K  R+  A  + + + GKG S 
Sbjct: 801 WNLIELDITWQLLERM--VKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSP 858

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           +  IY +L+    +    +KAL     M     +    S+ + +      GD  +     
Sbjct: 859 NEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLF 918

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
             ++E+       A+  L  GL K G +D    ++
Sbjct: 919 CDLLELGYNHDEVAWKILNDGLLKAGYVDICFQML 953



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 26/211 (12%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL-----AAERN-----------LDACLRV 225
           G I      L++M    C+P+ + Y  +++ L     A  R+           LD   ++
Sbjct: 753 GYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQL 812

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285
            E M K  +   V  Y +LI G CK GR+     L   M   G+  +  IY +LI+    
Sbjct: 813 LERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCD 872

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ-----DDLA 340
                KA   +  + + G++  L  Y  ++ GLC    F+K   LF   ++     D++A
Sbjct: 873 TKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVA 932

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
             +  +N  L+   + G +D  F++L+ MEK
Sbjct: 933 --WKILNDGLL---KAGYVDICFQMLSIMEK 958



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 78/211 (36%), Gaps = 16/211 (7%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ +  +++ KM R    PDV  Y  +I        +D      + M     E +   
Sbjct: 717 EGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWT 776

Query: 241 YVTLIMGLCKGGRV-VRG---------------HELFREMKENGILIDRAIYGVLIEGLV 284
           Y  L+  L KG    VR                 +L   M ++G+      Y  LI G  
Sbjct: 777 YCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFC 836

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
             G++ +AC LL  +   G   +  IY  +I   C  K F+KA     +  +    P   
Sbjct: 837 KAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLE 896

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
           +   L+V     G  +    L   + +L ++
Sbjct: 897 SYRLLVVGLCNEGDFEKVKSLFCDLLELGYN 927


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 128/565 (22%), Positives = 233/565 (41%), Gaps = 49/565 (8%)

Query: 35  NRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARF--I 92
           N  S    +S S  H  PP ++Q  D             S        RH  PI +F  I
Sbjct: 17  NFSSFLQNSSHSHFHSQPP-SIQNVD----------DAVSQFNRMLCMRHTPPIIQFNKI 65

Query: 93  TDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQK----GY 148
            D+F K +       ++   +L+ + PDL+   + +     +    F ++   K    GY
Sbjct: 66  LDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGY 125

Query: 149 KHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           + +  ++  L    CL                  +G++ + L   +K+     K D  +Y
Sbjct: 126 QPHTITFTTLIKGLCL------------------KGQVNKALHFHDKLLAQGIKFDQVSY 167

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +I  +    +    +++  ++   L + +V  Y T+I  LCK   V   + LF EM  
Sbjct: 168 GTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTA 227

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            GI  D   Y  LI G     K+ +A  LL ++V      ++  YN ++  LC+  +  +
Sbjct: 228 KGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKE 287

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLL---VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           A  +  V ++  + PD  T + L+       E+ +  + F  ++ M      V  D+  +
Sbjct: 288 AKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLM-----GVTPDVHSY 342

Query: 384 FEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
              + G  K + +  AL++F+E+  K     +  Y+ L+  L + G +     L  +MR 
Sbjct: 343 TILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRD 402

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             +  N ++++  I    ++G +  A    NK+ +    P    +  L  GLCK G +  
Sbjct: 403 RGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKD 462

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A    +D L         +KY + I   C+ G  E+ + +L++M + GC PN V    II
Sbjct: 463 AQEAFQDLLTK-GYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIII 521

Query: 561 SGMCKHGTLEEARKVFTNLRERKLL 585
           + + K    ++A K+   +  R LL
Sbjct: 522 NALFKKDENDKAEKLLRQMICRGLL 546


>gi|297842741|ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335093|gb|EFH65511.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 780

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 128/535 (23%), Positives = 235/535 (43%), Gaps = 42/535 (7%)

Query: 100 QFQWGPQVVTELSKLRRVTP-----------DLVAEVLKVENNPTLASKFFHWAGKQKGY 148
           +F    +V++ L+K + + P           +++  V+K E N  L  +FF WA +++  
Sbjct: 30  EFNISGEVISILAKKKPIEPALEPLVPFLSKNIITSVIKEEVNRQLGFRFFIWASRRERL 89

Query: 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------RIAEM------LE 189
           +    S+  +   LS +N      Q  E + S G               A+M      +E
Sbjct: 90  RSG-ESFGLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGLAEKAVE 148

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA-CLRVWEEMKKDLVEADVMAYVTLIMGL 248
              +M+   C+PDVF Y  ++R++  E         V+ EM K     ++  +  L+ GL
Sbjct: 149 SFGRMKEFDCRPDVFTYNVILRIMMREDVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGL 208

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
            K GR     ++F +M   GI  +R  Y +LI GL   G    A  L  ++  SG   D 
Sbjct: 209 YKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSPEDARKLFYEMKASGNYPDS 268

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             +N+++ G C++ +  +A++L  +  +D         + L+       R    F+L A 
Sbjct: 269 VAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYAN 328

Query: 369 MEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
           M  LK ++  D+  +   + G  K  +I  AL +   +  KG +     YN ++ AL   
Sbjct: 329 M--LKRNIKPDIILYTILIQGLSKAGKIEDALKLLRSMPSKGITPDTYCYNAVIKALCGR 386

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G +++   L  +M       ++ + +I I     +G + +A E   +I +    PSVA +
Sbjct: 387 GLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVRKAEEIFLEIEKSGCSPSVATF 446

Query: 486 NCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYA--LTILHVCRSGEAEKIIEVLN 542
           N L  GLCK GE+  A +L+    +G  AS      ++   +   + +SG   K  + L 
Sbjct: 447 NALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLAHSGNRSFDTMVQSGSILKAYKNLA 506

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
                G  P+ V  + +I+G C+ G ++ A K+   L+ + L    +++ Y+ ++
Sbjct: 507 HFADTGNSPDIVSYNVLINGFCREGDIDGALKLLNVLQLKGL--SPDSVTYNTLI 559



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 187/433 (43%), Gaps = 48/433 (11%)

Query: 152 FASYNALAYCLSRNNLFRAADQVPELMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTA 208
           FA YN +  C    NL+        LMD    +GR ++  ++ + M      P+   YT 
Sbjct: 183 FAVYNEMLKCNCSPNLY----TFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTI 238

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           +I  L    + +   +++ EMK      D +A+  L+ G CK GR+V   EL R  +++G
Sbjct: 239 LISGLCQRGSPEDARKLFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDG 298

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
            ++    Y  LI+GL    +  +A +L  +++    + D+ +Y  +I GL +  + + A 
Sbjct: 299 FVLGLRGYSSLIDGLFRARRYTQAFELYANMLKRNIKPDIILYTILIQGLSKAGKIEDAL 358

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
           KL        + PD    N ++      G ++    L  +M + +    A         +
Sbjct: 359 KLLRSMPSKGITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSM 418

Query: 389 GKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM---RGLNLE 444
            +   +  A ++F E++  G S SV  +N L+  L + GE+K+A  L  KM   R  +L 
Sbjct: 419 CRNGLVRKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGRPASLF 478

Query: 445 VN-SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
           +  + S + +    V+SG IL+A +      +    P + +YN L  G C+ G+ID A+ 
Sbjct: 479 LRLAHSGNRSFDTMVQSGSILKAYKNLAHFADTGNSPDIVSYNVLINGFCREGDIDGALK 538

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L                                    LN +  +G  P+ V  + +I+G+
Sbjct: 539 L------------------------------------LNVLQLKGLSPDSVTYNTLINGL 562

Query: 564 CKHGTLEEARKVF 576
            + G  EEA K+F
Sbjct: 563 HRVGREEEAFKLF 575



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 166/412 (40%), Gaps = 45/412 (10%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +   G+I + L++L  M      PD + Y A+I+ L     L+    +  EM +     D
Sbjct: 348 LSKAGKIEDALKLLRSMPSKGITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPD 407

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK--------- 288
              +  LI  +C+ G V +  E+F E++++G     A +  LI+GL   G+         
Sbjct: 408 ACTHTILICSMCRNGLVRKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLH 467

Query: 289 ---VGKACDLLKDLVDSGYRA---------------------------DLGIYNSIIGGL 318
              VG+   L   L  SG R+                           D+  YN +I G 
Sbjct: 468 KMEVGRPASLFLRLAHSGNRSFDTMVQSGSILKAYKNLAHFADTGNSPDIVSYNVLINGF 527

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           CR    D A KL  V     L+PD  T N L+     +GR +  FKL    +  + S A 
Sbjct: 528 CREGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLFYAKDDFRHSPA- 586

Query: 379 DLEKFFEFLVGKEERIMMALDVF-EELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGK 437
            + +       +  ++++A +++ + LK          N +     E GE ++AL    +
Sbjct: 587 -VYRSLMTWSCRRRKLLVAFNLWMKYLKKISCLDDETANEIEQCFKE-GETERALRRLIE 644

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           +     E+    ++I +    +SG   EA    + + E   + +  +   L  GLCK  +
Sbjct: 645 LDTRKDELTLGPYTIWLIGLCQSGRFHEALMVFSVLREKKILVTPPSCVKLIHGLCKREQ 704

Query: 498 IDAAMMLVRDCL-GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
           +DAA+ +    L  N    P    Y L+ L   R  + E + ++ N M + G
Sbjct: 705 LDAAIDVFLYTLDNNFKLMPRVCNYLLSSLLQSRE-KMEIVSQLTNRMERAG 755


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 171/377 (45%), Gaps = 39/377 (10%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PDV  +  ++  L  E  ++    ++ E+ K  +   V+++ TLI G CK G + +G  L
Sbjct: 223 PDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRL 282

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
            R M EN +  D   Y VLI GL  EG++  A  L  ++ D G   +   + ++I G C 
Sbjct: 283 KRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCV 342

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             + D   ++++  ++  + PD  T N L+    ++G +    KL+ +M +         
Sbjct: 343 TGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQ--------- 393

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
                                  LK   ++    Y +L+    + G+++ AL +  +M  
Sbjct: 394 ---------------------RGLKPDKFT----YTMLIDGCCKEGDLESALEIRKEMVK 428

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             +E+++++F+  I      G ++EA     +++E    P  A Y  +  G CK G++  
Sbjct: 429 EGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKT 488

Query: 501 AMMLVRD--CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
              L+++  C G+V   P    Y + +  +C+ G+ +    +L+ M   G  P+++  + 
Sbjct: 489 GFKLLKEMQCDGHV---PGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNI 545

Query: 559 IISGMCKHGTLEEARKV 575
           ++ G CKHG  E+  K+
Sbjct: 546 LLEGHCKHGNREDFDKL 562



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 151/347 (43%), Gaps = 41/347 (11%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +P V ++  +I       NLD   R+   M ++ V  DV  Y  LI GLCK G++   ++
Sbjct: 257 RPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANK 316

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           LF EM + G++ +   +  LI G    G+     ++ + ++  G + D+  YN++I GLC
Sbjct: 317 LFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLC 376

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +V    +A KL     Q  L PD  T   L+  C + G +++  ++  +M  +K  +  D
Sbjct: 377 KVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEM--VKEGIELD 434

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
              F   + G  +E +++ A     E+   G       Y +++    + G+VK    L  
Sbjct: 435 NVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLK 494

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
           +M+                           C+ H        VP V  YN L  GLCK G
Sbjct: 495 EMQ---------------------------CDGH--------VPGVVTYNVLLNGLCKQG 519

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           ++  A ML+ D + N+   P +  Y + +   C+ G  E   ++ +E
Sbjct: 520 QMKNANMLL-DAMLNLGVVPDDITYNILLEGHCKHGNREDFDKLQSE 565



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 102/508 (20%), Positives = 217/508 (42%), Gaps = 28/508 (5%)

Query: 112 SKLRRVTPDLVAEVL--KVENNPTLAS-----KFFHWAGKQKGYKHNFASYNALAYCLSR 164
           S L+R+ P L    L   +  NP   S      FF W   Q  ++ +  SY  + + L  
Sbjct: 56  SSLKRILPSLTPNHLIDLINLNPHSLSPPSLLSFFKWLSTQHHFRLSIHSYCTMTHFLCT 115

Query: 165 NNLFRAADQVPELMDSQ-------GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER 217
           + +   A  + + + S+            +LE     + NL       ++ ++       
Sbjct: 116 HKMLSEAQSLLQFVVSRKGKNSASSVFTSVLEARGTHQSNL------VFSVLMNAYTDSG 169

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
                ++ +  ++K  ++    +   L   L K          + E+ + G   D   + 
Sbjct: 170 YFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFN 229

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           VL+  L  E K+ +A  L  ++   G R  +  +N++I G C+    D+ ++L    +++
Sbjct: 230 VLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMEN 289

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIM 395
            + PD  T + L+    + G++D+  KL  +M      +  +   F   + G     R  
Sbjct: 290 RVFPDVFTYSVLINGLCKEGQLDDANKLFLEM--CDRGLVPNDVTFTTLINGHCVTGRAD 347

Query: 396 MALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
           + +++++++  KG    V  YN L+  L ++G++++A  L  +M    L+ +  ++++ I
Sbjct: 348 LGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLI 407

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
               + GD+  A E   ++++        A+  L  G C+ G++  A   +R+ L     
Sbjct: 408 DGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREML-EAGI 466

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P +  Y + I   C+ G+ +   ++L EM  +G  P  V  + +++G+CK G ++ A  
Sbjct: 467 KPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANM 526

Query: 575 VFTNLRERKLLTEANTIVYDEILIEHMK 602
           +   +    ++   + I Y+ +L  H K
Sbjct: 527 LLDAMLNLGVV--PDDITYNILLEGHCK 552



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 16/224 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           +KG K +  +YN L   L +    R A ++               ++E  +R L KPD F
Sbjct: 358 RKGVKPDVITYNTLINGLCKVGDLREAKKL---------------VIEMTQRGL-KPDKF 401

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            YT +I     E +L++ L + +EM K+ +E D +A+  LI G C+ G+V+      REM
Sbjct: 402 TYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREM 461

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
            E GI  D A Y ++I G   +G V     LLK++   G+   +  YN ++ GLC+  Q 
Sbjct: 462 LEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQM 521

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             A  L +  +   + PD  T N LL    + G  ++F KL ++
Sbjct: 522 KNANMLLDAMLNLGVVPDDITYNILLEGHCKHGNREDFDKLQSE 565



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 148/334 (44%), Gaps = 28/334 (8%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
           A   F   GK +G +    S+N L   YC S N            +D   R+        
Sbjct: 244 AQLLFGEIGK-RGLRPTVVSFNTLINGYCKSGN------------LDQGFRLKRF----- 285

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM-KKDLVEADVMAYVTLIMGLCKG 251
            M  N   PDVF Y+ +I  L  E  LD   +++ EM  + LV  DV  + TLI G C  
Sbjct: 286 -MMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDV-TFTTLINGHCVT 343

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           GR   G E++++M   G+  D   Y  LI GL   G + +A  L+ ++   G + D   Y
Sbjct: 344 GRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTY 403

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
             +I G C+    + A ++ +  V++ +  D      L+      G++    + L +M  
Sbjct: 404 TMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREM-- 461

Query: 372 LKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEV 428
           L+  +  D   +   + G  K+  +     + +E++  G+   V  YN+L+  L + G++
Sbjct: 462 LEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQM 521

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
           K A  L   M  L +  + ++++I ++ H + G+
Sbjct: 522 KNANMLLDAMLNLGVVPDDITYNILLEGHCKHGN 555


>gi|449450197|ref|XP_004142850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 632

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 178/396 (44%), Gaps = 14/396 (3%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           A+  E+ E+M R     + + +  +  VL  + +++      E+M+++  + DV+ Y TL
Sbjct: 238 AQCWELYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTL 297

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I    + GR+     L++ M   G++ D   Y  L+ GL   G+V +A  L   ++D G 
Sbjct: 298 IDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGM 357

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+ +YN++IG  C+     +A  L    +   + PD  T   L+      GR+ +   
Sbjct: 358 DPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLISALN 417

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
           L+ +++KL  +VA D+ K+    + +E+R   A  + E +    +     IYN L+ +  
Sbjct: 418 LVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFC 477

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
               V +AL L  +M   N +  + ++   I C  E    ++      +++E   +P   
Sbjct: 478 RSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVEMVESEVIPDHE 537

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY-----ALTILHVCRS-GEAEKI 537
               L  G CK G  D A  L       + S   +F++       +++ V R  G   K+
Sbjct: 538 ICRALVNGYCKEGNADKAESL-------LVSFAKDFQFFDSESFNSLVKVYRDVGNETKL 590

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
           +E+ + M + G  PN + C  II G+ K   L + R
Sbjct: 591 MELQDRMLKAGFLPNSLTCRYIIHGIWKSMRLNKQR 626



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 101/507 (19%), Positives = 213/507 (42%), Gaps = 26/507 (5%)

Query: 88  IARFITDAFRKNQFQWGPQVVTELSKLRRVTPDL----VAEVL-KVENNPTLASKFFHWA 142
           I   ++   + N     P++    S ++ + P L    ++++L + ++N   A  FF+W 
Sbjct: 67  IVELVSSHLKTN----NPRLALLQSHIKELIPHLGHRQISKILLRCQSNFVSALAFFNWV 122

Query: 143 GKQKGYKHNFASYNALAYCLSRNNLFRAADQ-VPELMDSQGRIAEMLEILEKMR--RNLC 199
                 + +  +Y  + + L+ +  F  A + + EL++    ++   ++ + +      C
Sbjct: 123 KYDLDIRLSSHNYCLIIHILAWSRQFPLAMKFLSELIELSKDVSSSEDVFQNLVLCTEHC 182

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
             +   +  +I+       +      +++M K     +V+A   ++ GL K     +  E
Sbjct: 183 NWNPVIFEMLIKAYVKLDLIHESYWSFKKMVKLGFVPNVIACNCILNGLAKMKSDAQCWE 242

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L+ EM   G+  +   + +L   L  +G V K    L+ + + G+  D+  YN++I    
Sbjct: 243 LYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSYV 302

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           R  + + A+ L+++  +  + PD  +   L+     +GR+    +L  +M  +   +  D
Sbjct: 303 RRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRM--IDRGMDPD 360

Query: 380 LEKFFEFLVG---KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLF 435
           +   +  L+G   K+  +  A  +  E+ G G +       IL+      G +  AL L 
Sbjct: 361 V-VLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLISALNLV 419

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +++ L + V    +   I           A     +I+E S  P    YN L +  C+ 
Sbjct: 420 VEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRS 479

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC---RSGEAEKIIEVLNEMTQEGCPPN 552
             +  A++L  + + N    PT   Y   I  +C   RS + E +   + EM +    P+
Sbjct: 480 NNVSEALLLKLEMI-NRNYKPTTDTYKSLIHCMCEINRSVDGEGL---MVEMVESEVIPD 535

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNL 579
             IC A+++G CK G  ++A  +  + 
Sbjct: 536 HEICRALVNGYCKEGNADKAESLLVSF 562



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 1/142 (0%)

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N + F + I+ +V+   I E+     K++++  VP+V A NC+  GL K+   DA    +
Sbjct: 185 NPVIFEMLIKAYVKLDLIHESYWSFKKMVKLGFVPNVIACNCILNGLAKMKS-DAQCWEL 243

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
            + +G +      + + +    +CR G+  KI   L +M +EG  P+ V  + +I    +
Sbjct: 244 YEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSYVR 303

Query: 566 HGTLEEARKVFTNLRERKLLTE 587
            G LE+A  ++  +  R ++ +
Sbjct: 304 RGRLEDAFYLYKIMYRRGVMPD 325


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 180/407 (44%), Gaps = 47/407 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + ++L+++++M+    KP+++ Y ++I +L     +D   RV  EM    +  D + Y
Sbjct: 24  GELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVY 83

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G CK G +   ++LF EM++  I+ D   Y  +I GL   GK+ +A  +   +  
Sbjct: 84  TTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFS 143

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   Y ++I G C+  + +KA+ L    VQ  L P+  T   L     ++G++D 
Sbjct: 144 RGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDT 203

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
                                              A ++  E+ GKG   ++  YN L+ 
Sbjct: 204 -----------------------------------ANELLHEMCGKGLQLNICTYNSLVN 228

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L + G +++A+ L  +M    +  ++++F+  +  + ++G++++A E   ++++    P
Sbjct: 229 GLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQP 288

Query: 481 SVAAYNCLTKGLCKIGEID-----AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
           +V  +N L  G C  G ++      A ML +  + N  +      Y   +   C      
Sbjct: 289 TVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTT------YNSLMKQYCIRNNMR 342

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
              E+   M   G  P+    + +I G CK   ++EA  +   + E+
Sbjct: 343 CTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEK 389



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 161/367 (43%), Gaps = 21/367 (5%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           + KG K N  +YN++   L ++     A++V   M +QG +                PD 
Sbjct: 37  QMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIV----------------PDT 80

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT +I       N+ A  ++++EM+K  +  D +AY  +I GLC+ G+++   ++F +
Sbjct: 81  VVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNK 140

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M   G+  D   Y  LI+G    G++ KA  L   +V SG   ++  Y ++  GLC++ Q
Sbjct: 141 MFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQ 200

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            D A +L        L  +  T N L+    + G +    KL+ +ME     +  D   F
Sbjct: 201 VDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVA--GMYPDTITF 258

Query: 384 FEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
              +    K   ++ A ++  E+  +G   +V  +N+LM      G ++    L   M  
Sbjct: 259 TTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLE 318

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             +  N+ +++  ++ +    ++    E +  +     +P    YN L KG CK   +  
Sbjct: 319 KGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKE 378

Query: 501 AMMLVRD 507
           A  L ++
Sbjct: 379 AWFLHKE 385



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 155/340 (45%), Gaps = 8/340 (2%)

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           MK  G   D   Y  +I G    G++ K   L++++   G + +L  YNSII  LC+  +
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            D A ++    +   + PD      L+    ++G +   +KL  +MEK +  +  D   +
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQR--IVPDFIAY 118

Query: 384 FEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRG 440
              + G  +  ++M A  VF ++  +G     + Y  L+    + GE++KA  L  +M  
Sbjct: 119 TAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQ 178

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             L  N ++++       + G +  A E  +++       ++  YN L  GLCK G I  
Sbjct: 179 SGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQ 238

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A+ L+ + +      P    +   +   C++GE  K  E+L EM   G  P  +  + ++
Sbjct: 239 AVKLMEE-MEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLM 297

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
           +G C  G LE+  ++   + E+ ++   NT  Y+ ++ ++
Sbjct: 298 NGFCMSGMLEDGERLLAWMLEKGIM--PNTTTYNSLMKQY 335



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 166/388 (42%), Gaps = 34/388 (8%)

Query: 117 VTPDLVAEVLKVEN-----NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA 171
           + PD V     ++      N   A K F    KQ+    +F +Y A+   L R      A
Sbjct: 76  IVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQR-IVPDFIAYTAVICGLCRCGKMMEA 134

Query: 172 DQVPELMDSQG----------------RIAEM---LEILEKMRRNLCKPDVFAYTAMIRV 212
           D+V   M S+G                +  EM     +  +M ++   P+V  YTA+   
Sbjct: 135 DKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADG 194

Query: 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           L     +D    +  EM    ++ ++  Y +L+ GLCK G + +  +L  EM+  G+  D
Sbjct: 195 LCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPD 254

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              +  L++     G++ KA +LL++++D G +  +  +N ++ G C     +   +L  
Sbjct: 255 TITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLA 314

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK--LKFSVAADLEKFFEFLVG- 389
             ++  + P+ +T N L+    +   + N  +   ++ K      V  D   +   + G 
Sbjct: 315 WMLEKGIMPNTTTYNSLM----KQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGH 370

Query: 390 -KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS 447
            K   +  A  + +E+  KG++ +   YN ++    +  ++ +A  LF +MR   +  ++
Sbjct: 371 CKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADA 430

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIE 475
             +++ +      G++  A E  ++ IE
Sbjct: 431 EIYNLFVDISYGEGNMETALELCDEAIE 458



 Score = 42.7 bits (99), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 20/162 (12%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           +KG   N  +YN+L   YC+ RNN+ R   ++ + M ++G +                PD
Sbjct: 318 EKGIMPNTTTYNSLMKQYCI-RNNM-RCTTEIYKGMCARGVM----------------PD 359

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
              Y  +I+     RN+     + +EM +        +Y ++I G  K  ++    ELF 
Sbjct: 360 SNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFE 419

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           EM+  G+  D  IY + ++   GEG +  A +L  + +++ +
Sbjct: 420 EMRREGMAADAEIYNLFVDISYGEGNMETALELCDEAIENCF 461


>gi|357161570|ref|XP_003579133.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Brachypodium distachyon]
          Length = 721

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 128/581 (22%), Positives = 234/581 (40%), Gaps = 101/581 (17%)

Query: 89  ARFITDAFR--KNQFQWGPQVVTELSKLRRV-TPDLVAEVLKVE--NNPTLASKFFHWAG 143
           +R + D  R  + +  W P++  +L  L RV +P  V  VL+ +   +   A +FF WA 
Sbjct: 58  SRLVRDTCRLLEQRGSWTPKLEAQLRHLLRVLSPPQVRAVLRAQAQGDARAAFEFFRWAD 117

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM-------------------DSQGRI 184
           +Q  Y+H    ++ +   LSR  L   A +V  LM                      G++
Sbjct: 118 RQWQYRHAPEVFDEMLGLLSRTRLHDPARRVVRLMIRRGVRRGPRQFAHLMLSYSRAGKL 177

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
              + +L+ M+ + C PD+      + VL     +D  L   + M++  VE DV+ Y  L
Sbjct: 178 RSAMRVLQLMQTDGCAPDISICNVAVNVLVVAGRVDKALGFADRMRRVGVEPDVVTYNCL 237

Query: 245 IMGLCKGGRVVRGHELFREMKEN------------------------------------G 268
           I GLC   RVV   E+   M +N                                    G
Sbjct: 238 IKGLCSVRRVVEALEMIGVMLKNGCPPDKISYYTVMSFLCKEKRVSEVRSLLATMRNDAG 297

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKD-------LVDSGYRA--------------- 306
           +L D+  Y +LI  L   G   +A + L++       + + GY A               
Sbjct: 298 LLTDQVTYNMLIHVLAKHGHADEALEFLRESEGKRFRVDEVGYSAVVHSFCLNGRMAEAK 357

Query: 307 -------------DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
                        D+  Y++++ G CR+ + D+A K+ +   ++   P+  T   LL   
Sbjct: 358 EIVGEMISKECHPDVVTYSAVVDGFCRIGEIDQARKMMKHMYKNGCKPNIVTHTALLNGL 417

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY--SS 411
            ++G+    ++LL +  +  ++ +            +E ++  + DV  ++  KG+  ++
Sbjct: 418 CKVGKSSEAWELLNKSGEDWWTPSDITYSVVMHGFRREGKLKESCDVVAQMLQKGFFPTT 477

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           V I N+L+ AL + G+  +A     + +     +N ++F+  I      GD+  A    +
Sbjct: 478 VEI-NLLIHALCKEGKPAEAKEFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLLD 536

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
            +   ++ P V  Y  +   L + G +  A  LV   L N    PT   Y   I   C  
Sbjct: 537 DLYLSNRHPDVVTYTVVVNALGRKGRLKEATGLVEKML-NRGLVPTLVTYRTVIHRYCEK 595

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
           G  E+++++L++M        + + + +I  +C  G L EA
Sbjct: 596 GTVEELVDLLDKMLAR--QELKSVYNQVIEKLCAFGKLNEA 634


>gi|449483905|ref|XP_004156728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 636

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 178/396 (44%), Gaps = 14/396 (3%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           A+  E+ E+M R     + + +  +  VL  + +++      E+M+++  + DV+ Y TL
Sbjct: 242 AQCWELYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTL 301

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I    + GR+     L++ M   G++ D   Y  L+ GL   G+V +A  L   ++D G 
Sbjct: 302 IDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGM 361

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+ +YN++IG  C+     +A  L    +   + PD  T   L+      GR+ +   
Sbjct: 362 DPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLISALN 421

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL 423
           L+ +++KL  +VA D+ K+    + +E+R   A  + E +    +     IYN L+ +  
Sbjct: 422 LVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFC 481

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
               V +AL L  +M   N +  + ++   I C  E    ++      +++E   +P   
Sbjct: 482 RSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVEMVESEVIPDHE 541

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY-----ALTILHVCRS-GEAEKI 537
               L  G CK G  D A  L       + S   +F++       +++ V R  G   K+
Sbjct: 542 ICRALVNGYCKEGNADKAESL-------LVSFAQDFQFFDSESFNSLVKVYRDVGNETKL 594

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
           +E+ + M + G  PN + C  II G+ K   L + R
Sbjct: 595 MELQDRMLKAGFLPNSLTCRYIIHGIWKSMRLNKQR 630



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 101/509 (19%), Positives = 214/509 (42%), Gaps = 26/509 (5%)

Query: 88  IARFITDAFRKNQFQWGPQVVTELSKLRRVTPDL----VAEVL-KVENNPTLASKFFHWA 142
           I   ++   + N     P++    S ++ + P L    ++++L + ++N   A  FF+W 
Sbjct: 71  IVELVSSHLKTN----NPRLALLQSHIKELIPHLGHRQISKILLRCQSNFVSALAFFNWV 126

Query: 143 GKQKGYKHNFASYNALAYCLSRNNLFRAADQ-VPELMDSQGRIAEMLEILEKMR--RNLC 199
                 + +  +Y  + + L+ +  F  A + + EL++    ++   ++ + +      C
Sbjct: 127 KYDLDIRLSSHNYCLIIHILAWSRQFPLAMKFLSELIELSKDVSSSEDVFQNLVLCTEHC 186

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
             +   +  +I+       +      +++M K     +V+A   ++ GL K     +  E
Sbjct: 187 NWNPVIFEMLIKAYVKLDLIHESYWSFKKMVKLGFVPNVIACNCILNGLAKMKSDAQCWE 246

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L+ EM   G+  +   + +L   L  +G V K    L+ + + G+  D+  YN++I    
Sbjct: 247 LYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSYV 306

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           R  + + A+ L+++  +  + PD  +   L+     +GR+    +L  +M  +   +  D
Sbjct: 307 RRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRM--IDRGMDPD 364

Query: 380 LEKFFEFLVG---KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLF 435
           +   +  L+G   K+  +  A  +  E+ G G +       IL+      G +  AL L 
Sbjct: 365 V-VLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLISALNLV 423

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +++ L + V    +   I           A     +I+E S  P    YN L +  C+ 
Sbjct: 424 VEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRS 483

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC---RSGEAEKIIEVLNEMTQEGCPPN 552
             +  A++L  + + N    PT   Y   I  +C   RS + E +   + EM +    P+
Sbjct: 484 NNVSEALLLKLEMI-NRNYKPTTDTYKSLIHCMCEINRSVDGEGL---MVEMVESEVIPD 539

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRE 581
             IC A+++G CK G  ++A  +  +  +
Sbjct: 540 HEICRALVNGYCKEGNADKAESLLVSFAQ 568



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 1/142 (0%)

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N + F + I+ +V+   I E+     K++++  VP+V A NC+  GL K+   DA    +
Sbjct: 189 NPVIFEMLIKAYVKLDLIHESYWSFKKMVKLGFVPNVIACNCILNGLAKMKS-DAQCWEL 247

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
            + +G +      + + +    +CR G+  KI   L +M +EG  P+ V  + +I    +
Sbjct: 248 YEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSYVR 307

Query: 566 HGTLEEARKVFTNLRERKLLTE 587
            G LE+A  ++  +  R ++ +
Sbjct: 308 RGRLEDAFYLYKIMYRRGVMPD 329


>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
          Length = 822

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 199/446 (44%), Gaps = 26/446 (5%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E L+++E      C P V  Y  +I       ++   L +  EM+       ++ 
Sbjct: 217 EGRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVT 276

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +LI  L K G + +   LF EM++ G+  +  IY  +I+ L       +A  +LK + 
Sbjct: 277 YGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMF 336

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            SG   D+  +N++I GLC      KA       ++ +L P+  +  PL+      G + 
Sbjct: 337 ASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELM 396

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
               LL  ME +      D+  F   + G     ++  AL V E++  +  +  V IYN+
Sbjct: 397 AASDLL--MEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNV 454

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L +   +  A  +  +M   N++ +   ++  I   + S ++ +A     KI E  
Sbjct: 455 LISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDA----RKIFEFM 510

Query: 478 Q----VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN---VASGPTEFKYALTILHVCR 530
           +     P + + N + KG C+ G +  A++    C+ N   V   P EF Y   I    +
Sbjct: 511 EHKGVRPDIVSCNAMIKGYCQFGMMSEAIL----CMSNMRKVGCIPDEFTYTTVISGYAK 566

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            G     +  L +M +  C PN V  S++I+G CK G  + A  +F N++   L    N 
Sbjct: 567 QGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEAL--SPNV 624

Query: 591 IVYDEILIEHMKKKTADLVL-SGLKF 615
           + Y  ILI  + KK  D VL +GL F
Sbjct: 625 VTY-TILIGSLFKK--DKVLRAGLYF 647



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 175/407 (42%), Gaps = 16/407 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  +M E L +   +L  P+V     ++++L  +R  D   ++++EM  +   AD  + 
Sbjct: 150 GKATDMCERLREQYGSL--PEVTHCNRLLKLLVEQRRWDDARKLYDEMLGEDSGADNYST 207

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLC  GRV  G +L       G +     Y VLI+G    G +G+   LL ++  
Sbjct: 208 CVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEA 267

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G+   L  Y S+I  L +    +K   LF    +  L+P+    N ++    +      
Sbjct: 268 KGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQ 327

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNIL 418
              +L QM         D+  F   + G   E  +  A     E   +  +   + Y  L
Sbjct: 328 AMVILKQM--FASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPL 385

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +      GE+  A  L  +M G     + ++F   I   V +G + EA     K+ E   
Sbjct: 386 IHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQV 445

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILHVCRS---GEA 534
            P V  YN L  GLCK   + AA  ++ + L  NV   P EF YA  I    RS   G+A
Sbjct: 446 FPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQ--PDEFVYATLIDGFIRSENLGDA 503

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            KI E    M  +G  P+ V C+A+I G C+ G + EA    +N+R+
Sbjct: 504 RKIFEF---MEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRK 547



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 153/379 (40%), Gaps = 35/379 (9%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            + + IL++M  + C PD+  +  +I  L  E ++        E  +  +  + ++Y  L
Sbjct: 326 TQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPL 385

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G C  G ++   +L  EM   G   D   +G LI GLV  GKV +A  + + + +   
Sbjct: 386 IHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQV 445

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+ IYN +I GLC+      A  + E  ++ ++ PD      L+         D F +
Sbjct: 446 FPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLI---------DGFIR 496

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE 424
                E L      D  K FEF+  K  R                  +   N ++    +
Sbjct: 497 ----SENL-----GDARKIFEFMEHKGVR----------------PDIVSCNAMIKGYCQ 531

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G + +A+     MR +    +  +++  I  + + G++  A      +I+    P+V  
Sbjct: 532 FGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVT 591

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y+ L  G CK G+ D+A  L  +      S P    Y + I  + +  +  +       M
Sbjct: 592 YSSLINGYCKTGDTDSAEGLFANMQAEALS-PNVVTYTILIGSLFKKDKVLRAGLYFETM 650

Query: 545 TQEGCPPNEVICSAIISGM 563
               C PN+V    +++G+
Sbjct: 651 LLNHCSPNDVTLHYLVNGL 669



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 91/408 (22%), Positives = 169/408 (41%), Gaps = 28/408 (6%)

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           E +RR L  P+  +YT +I        L A   +  EM       DV+ +  LI GL   
Sbjct: 369 EAIRREL-NPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVA 427

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           G+V     +  +M E  +  D  IY VLI GL  +  +  A ++L+++++   + D  +Y
Sbjct: 428 GKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVY 487

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
            ++I G  R +    A K+FE      + PD  + N ++    + G M      ++ M K
Sbjct: 488 ATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRK 547

Query: 372 L-----KFSVAADLEKFFEFLVGKEERIMMALD-VFEELKGKGYSSVPIYNILMGALLEI 425
           +     +F+    +  +      K+  +  AL  + + +K K   +V  Y+ L+    + 
Sbjct: 548 VGCIPDEFTYTTVISGY-----AKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKT 602

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485
           G+   A  LF  M+   L  N ++++I I    +   +L A      ++     P+    
Sbjct: 603 GDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTL 662

Query: 486 NCLTKGL------------CKIGEI---DAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
           + L  GL            C   E+   DA +++ +  + ++   P    Y   I  +CR
Sbjct: 663 HYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGD-PRNSAYNAIIFSLCR 721

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
                + ++  N M ++G  PN +   +++ G C  G     R +  N
Sbjct: 722 HNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSMNWRTILPN 769


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/468 (22%), Positives = 199/468 (42%), Gaps = 64/468 (13%)

Query: 147 GYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           G+  N   +N L   YC   N     A ++ ++M S+  I      L  + +  CK D  
Sbjct: 320 GFNPNVVVFNNLIDGYCKMGN--IEGALKIKDVMISK-NITPTSVTLYSLMQGFCKSDQI 376

Query: 205 --AYTAMIRVLAAERNL--DACLRV--W---------------EEMKKDLVEADVMAYVT 243
             A  A+  +L++  ++  D C  V  W                 + ++   +D++    
Sbjct: 377 EHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLL-LTM 435

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+ GLCK G+ +   EL+  + E G    +     LI GL G GK+ +A  ++K++++ G
Sbjct: 436 LVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERG 495

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
              D   YN++I G C   + +  ++L E   +  + PD  T N LL     +G++D+  
Sbjct: 496 LPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDD-- 553

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGAL 422
                                            A+ +++E K  G  S++  Y I+M   
Sbjct: 554 ---------------------------------AIKLWDEFKASGLISNIHTYGIMMEGY 580

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            +   ++    LF ++    +E+NS+ ++I I+ H ++G++  A +    +     +P+ 
Sbjct: 581 CKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNC 640

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
           A Y+ L  G+C IG ++ A  L+ D +      P    Y   I   C+ G+ +       
Sbjct: 641 ATYSSLIHGVCNIGLVEDAKHLI-DEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWL 699

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           EM      PN+   + +I G CK G +E+A  +   ++E  ++ +  T
Sbjct: 700 EMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVT 747



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 103/477 (21%), Positives = 209/477 (43%), Gaps = 10/477 (2%)

Query: 160 YCLSRNNLFRAADQVPELMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAE 216
           Y L+R   F +       + S  +  E     E+   M    C PDVF++T +I  L   
Sbjct: 175 YLLARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVMSEGAC-PDVFSFTNVINALCKG 233

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
             ++  + ++ +M+K  +  +V+ Y  +I GLC+ GR+    EL  +M   G+  +   Y
Sbjct: 234 GKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTY 293

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
           G LI GL+      K   +L +++ +G+  ++ ++N++I G C++   + A K+ +V + 
Sbjct: 294 GALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMIS 353

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
            ++ P   T+  L+    +  ++++    L ++     S+  D        + K+ R   
Sbjct: 354 KNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHS 413

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A    + +  + +  S  +  +L+  L + G+  +A  L+ ++       + ++ +  I 
Sbjct: 414 AFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIH 473

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
               +G + EA     +++E         YN L  G C  G+++    L R+ +      
Sbjct: 474 GLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRL-REEMTKRGIQ 532

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P  + Y   +  +C  G+ +  I++ +E    G   N      ++ G CK   +E+   +
Sbjct: 533 PDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENL 592

Query: 576 FTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKLLSS 632
           F  L  +K+  E N+IVY+ I+  H +       L  L+   ++SK     C   SS
Sbjct: 593 FNELLSKKM--ELNSIVYNIIIKAHCQNGNVAAALQLLE--NMKSKGILPNCATYSS 645



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 139/320 (43%), Gaps = 34/320 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E   I+++M       D   Y A+I     E  ++ C R+ EEM K  ++ D+  Y
Sbjct: 479 GKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTY 538

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLC  G++    +L+ E K +G++ +   YG+++EG     ++    +L  +L+ 
Sbjct: 539 NFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLS 598

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                +  +YN II   C+      A +L E      + P+ +T + L+     +G +++
Sbjct: 599 KKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVED 658

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
              L+ +M K  F                                    +V  Y  L+G 
Sbjct: 659 AKHLIDEMRKEGF----------------------------------VPNVVCYTALIGG 684

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
             ++G++  A   + +M   N+  N  ++++ I  + + G++ +A     K+ E   VP 
Sbjct: 685 YCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPD 744

Query: 482 VAAYNCLTKGLCKIGEIDAA 501
           V  YN LT G CK  ++D A
Sbjct: 745 VVTYNVLTNGFCKANDMDNA 764



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 129/282 (45%), Gaps = 11/282 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G++     + E+M +   +PD++ Y  ++R L     LD  +++W+E K   + +++ 
Sbjct: 512 NEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIH 571

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  ++ G CK  R+     LF E+    + ++  +Y ++I+     G V  A  LL+++
Sbjct: 572 TYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENM 631

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   +   Y+S+I G+C +   + A  L +   ++   P+      L+    ++G+M
Sbjct: 632 KSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQM 691

Query: 360 DNFFKLLAQMEKL-----KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVP 413
           D       +M        KF+    ++ + +  +G  E+   A ++  ++K  G    V 
Sbjct: 692 DTAESTWLEMISFNIHPNKFTYTVMIDGYCK--LGNMEK---ANNLLIKMKESGIVPDVV 746

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
            YN+L     +  ++  A  +  +M    L V+ ++++  + 
Sbjct: 747 TYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVH 788



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 7/167 (4%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           N  S   L  C + ++L      +       G + +   ++++MR+    P+V  YTA+I
Sbjct: 630 NMKSKGILPNCATYSSLIHGVCNI-------GLVEDAKHLIDEMRKEGFVPNVVCYTALI 682

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
                   +D     W EM    +  +   Y  +I G CK G + + + L  +MKE+GI+
Sbjct: 683 GGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIV 742

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
            D   Y VL  G      +  A  +   +   G   D   Y +++ G
Sbjct: 743 PDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 789


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 130/588 (22%), Positives = 237/588 (40%), Gaps = 64/588 (10%)

Query: 69  TQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTEL------SKLRRVTPD-- 120
           T+ P  DPK   L    +P +   +     N   +    +++L      SKL+ +  +  
Sbjct: 16  TRFPSLDPK---LNNTKTPFSSPNSTYTTPNSHTFDTPTISQLIAKQHWSKLKTIVKETN 72

Query: 121 ---LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177
              L+  +   E  P L   +F W  K+ G  HN   +  L + L+     +  +++  L
Sbjct: 73  PSSLLQHLFNSEAQPDLILCYFKWTQKEFGAIHNVEQFCRLLHLLANA---KNYNKIRAL 129

Query: 178 MDS---------------------------------------QGRIAEMLEILEKMRRNL 198
           +DS                                        G +   LE  ++     
Sbjct: 130 LDSFAKNAHYSNSTIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYG 189

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
            +    +   M+  L  E  +     V++EM +  +  +V+ +  +I GLCK G+  +  
Sbjct: 190 FRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAG 249

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
           ++  +MK  G       Y  +I+G    GK+ KA  LLK++V      +   +N +I G 
Sbjct: 250 DVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGF 309

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           CR +    A K+FE   +  L P+  T N L+      G++D    L  +M  +   +  
Sbjct: 310 CRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGM--GLKP 367

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
           ++  +   + G  K++ +  A ++ +++  +G + +V  +N L+ A  + G +  A  L 
Sbjct: 368 NVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLR 427

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             M    +  N  +++  I      G++ EA +   ++        +  YN L   LCK 
Sbjct: 428 SMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKK 487

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           GE   A+ L+ D +  V   P+   Y   I    R G +   + V   M ++G   N V 
Sbjct: 488 GETRKAVRLL-DEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVT 546

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
            + +I G C  G LEEA ++   + E+ L+   N   YD +  E M+K
Sbjct: 547 YNVLIKGFCNKGKLEEANRLLNEMLEKGLI--PNRTTYDILRDEMMEK 592


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/458 (23%), Positives = 205/458 (44%), Gaps = 43/458 (9%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G + N  +YN+L Y L ++                 ++ + + +L KM+++   P+V
Sbjct: 489 ERDGCQPNAWTYNSLMYGLVKDK----------------KLHKAMALLTKMQKDGIIPNV 532

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT +++    E + D   R++E M+++ ++ D  AY  L   LCK GR     E +  
Sbjct: 533 ITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGR---AEEAYSF 589

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +   G+ + +  Y  LI+G    G    A  L++ ++D G   D   Y+ ++  LC+ K+
Sbjct: 590 IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKR 649

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM---GRMDNFFKLLAQMEKLKFSVAADL 380
            ++A  + +   Q  L     T+    +   EM   G+ D+  ++  +M       +A  
Sbjct: 650 LNEALPILD---QMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATT 706

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
              F     KE R+  A D+  +++ +G +  V  YNIL+     +G + +A     +M 
Sbjct: 707 YTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMV 766

Query: 440 GLNLEVNSLSFSIAIQ-------CHVESGD------ILE---ACECHNKIIEMSQVPSVA 483
           G + E N  ++ + ++        +V S D      ++E     +   ++++    P+V 
Sbjct: 767 GASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVT 826

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            Y+ L  G CK G ++ A +L+    G   S P E  Y L I   C +   EK +  ++ 
Sbjct: 827 TYSSLIAGFCKAGRLEEACLLLDHMCGKGLS-PNEDIYTLLIKCCCDTKFFEKALSFVSI 885

Query: 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           M++ G  P       ++ G+C  G  E+ + +F +L E
Sbjct: 886 MSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLE 923



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 200/463 (43%), Gaps = 57/463 (12%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C+ + ++YT +I+ L   + +   L ++  MK+D    +V A+  LI GLCK GRV    
Sbjct: 249 CQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDAR 308

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            LF  M +NG++     Y  +I G    G++  A  + + +  +G   D   YN++I GL
Sbjct: 309 LLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGL 368

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQMEKLKFSV 376
           C  K  ++A +L    V++   P   T   L+   C AE  + D+  ++  +M   K  +
Sbjct: 369 CDQKT-EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAE--KFDDALRMKNKMMSSKCKL 425

Query: 377 AADLEKFFEFL--VGKEERIMMALDVFEELKGKG-------YSSVP-------------- 413
             DL+ F + +  + K++R+  A ++  E+   G       Y+S+               
Sbjct: 426 --DLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALE 483

Query: 414 ---------------IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV 458
                           YN LM  L++  ++ KA+ L  KM+   +  N ++++  +Q   
Sbjct: 484 VLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQC 543

Query: 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-MLVRDCLGNVASGPT 517
           +  D   A      + +    P   AY  LT  LCK G  + A   +VR          T
Sbjct: 544 DEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRK-----GVALT 598

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF- 576
           +  Y   I    ++G  +    ++  M  EGC P+    S ++  +CK   L EA  +  
Sbjct: 599 KVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILD 658

Query: 577 -TNLRERKLLTEANTIVYDEILIE----HMKKKTADLVLSGLK 614
             +LR  K    A TI+ DE+L E    H K+   ++  SG K
Sbjct: 659 QMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHK 701



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 117/522 (22%), Positives = 213/522 (40%), Gaps = 64/522 (12%)

Query: 117 VTPDLVAEVLKVENN---PTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQ 173
           VT   VA++ + E+    P  A  FF W  ++ G++H   S+ AL + LSR    RA  Q
Sbjct: 52  VTAAHVADLFRAESTAPEPATALAFFEWLARRDGFRHTADSHAALLHLLSRR---RAPAQ 108

Query: 174 VPELMDSQGRIAEMLE-------ILEKMRRNLCKPDVFA---YTAMIRVLAAERNLDACL 223
              L+ S    ++  E        ++ +RR        +   Y   +R LA     +   
Sbjct: 109 YERLVVSMLNCSDTAEDMRVSADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMG 168

Query: 224 RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
           RV+ ++ +D +  D + Y T+I   CK G +   H  FR + E G+  +      L+ G 
Sbjct: 169 RVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGY 228

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK--------------------- 322
              G++ KAC L   +   G + +   Y  +I GLC  K                     
Sbjct: 229 CRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNV 288

Query: 323 --------------QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
                         +   A  LF+   Q+ + P   T N ++V  +++GRM++  K+   
Sbjct: 289 RAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKEL 348

Query: 369 MEKLKFSVAADLEKFFEFLVGK-EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
           ME  K     D   +   + G  +++   A ++      +G++ +V  +  L+       
Sbjct: 349 ME--KNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAE 406

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
           +   AL +  KM     +++   F   I   ++   + EA E  N+I     VP+V  Y 
Sbjct: 407 KFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYT 466

Query: 487 CLTKGLCKIGEIDAAM----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
            +  G CK G++D A+    M+ RD        P  + Y   +  + +  +  K + +L 
Sbjct: 467 SIIDGYCKSGKVDIALEVLKMMERD-----GCQPNAWTYNSLMYGLVKDKKLHKAMALLT 521

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           +M ++G  PN +  + ++ G C     + A ++F  + +  L
Sbjct: 522 KMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGL 563



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 102/425 (24%), Positives = 192/425 (45%), Gaps = 21/425 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA----D 237
           GR+ + L+I E M +N C PD + Y  +I  L  ++  +A     EE+  + V+      
Sbjct: 337 GRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEA-----EELLNNAVKEGFTPT 391

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ +  LI G C   +      +  +M  +   +D  ++G LI  L+ + ++ +A +LL 
Sbjct: 392 VVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLN 451

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           ++  +G   ++  Y SII G C+  + D A ++ ++  +D   P+  T N L+    +  
Sbjct: 452 EISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDK 511

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPI 414
           ++     LL +M+K    +  ++  +   L G+  E     A  +FE ++  G       
Sbjct: 512 KLHKAMALLTKMQK--DGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHA 569

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y +L  AL + G  ++A Y F   +G+ L    + ++  I    ++G+   A     ++I
Sbjct: 570 YAVLTDALCKAGRAEEA-YSFIVRKGVAL--TKVYYTTLIDGFSKAGNTDFAATLIERMI 626

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           +    P    Y+ L   LCK   ++ A+ ++ D +       T F Y + I  + R G+ 
Sbjct: 627 DEGCTPDSYTYSVLLHALCKQKRLNEALPIL-DQMSLRGIKCTIFAYTILIDEMLREGKH 685

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           +    + NEMT  G  P+    +  I+  CK G LE+A  +   +    +   A  +V  
Sbjct: 686 DHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGV---APDVVTY 742

Query: 595 EILIE 599
            ILI+
Sbjct: 743 NILID 747



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 136/335 (40%), Gaps = 21/335 (6%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           ++E+M    C PD + Y+ ++  L  ++ L+  L + ++M    ++  + AY  LI  + 
Sbjct: 621 LIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEML 680

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           + G+      ++ EM  +G       Y V I     EG++  A DL+  +   G   D+ 
Sbjct: 681 REGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVV 740

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL----------VCCAEMGRM 359
            YN +I G   +   D+A+   +  V     P++ T   LL          V   +   M
Sbjct: 741 TYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGM 800

Query: 360 DNF------FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS- 410
            N       ++LL +M  +K  +   +  +   + G  K  R+  A  + + + GKG S 
Sbjct: 801 WNLIELDITWQLLERM--VKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSP 858

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           +  IY +L+    +    +KAL     M     +    S+ + +      GD  +     
Sbjct: 859 NEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLF 918

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
             ++E+       A+  L  GL K G +D    ++
Sbjct: 919 CDLLELGYNHDEVAWKILNDGLLKAGYVDICFQML 953



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 26/211 (12%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIR-----VLAAERN-----------LDACLRV 225
           G I      L++M    C+P+ + Y  +++      LA  R+           LD   ++
Sbjct: 753 GYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQL 812

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285
            E M K  +   V  Y +LI G CK GR+     L   M   G+  +  IY +LI+    
Sbjct: 813 LERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCD 872

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ-----DDLA 340
                KA   +  + + G++  L  Y  ++ GLC    F+K   LF   ++     D++A
Sbjct: 873 TKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVA 932

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
             +  +N  L+   + G +D  F++L+ MEK
Sbjct: 933 --WKILNDGLL---KAGYVDICFQMLSIMEK 958



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 78/211 (36%), Gaps = 16/211 (7%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ +  +++ KM R    PDV  Y  +I        +D      + M     E +   
Sbjct: 717 EGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWT 776

Query: 241 YVTLIMGLCKGGRV-VRG---------------HELFREMKENGILIDRAIYGVLIEGLV 284
           Y  L+  L KG    VR                 +L   M ++G+      Y  LI G  
Sbjct: 777 YCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFC 836

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
             G++ +AC LL  +   G   +  IY  +I   C  K F+KA     +  +    P   
Sbjct: 837 KAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLE 896

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
           +   L+V     G  +    L   + +L ++
Sbjct: 897 SYRLLVVGLCNEGDFEKVKSLFCDLLELGYN 927


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 113/483 (23%), Positives = 211/483 (43%), Gaps = 40/483 (8%)

Query: 127 KVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDS---- 180
           K+EN  +  S       ++KG   +  +YN L  AYC  R  L   A    ELMDS    
Sbjct: 269 KIENTKSFLSDM-----EEKGVFPDVVTYNTLINAYC--RQGLLEEA---FELMDSMSGK 318

Query: 181 ------------------QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
                              G+      +L++M +    PD   Y  ++       N+   
Sbjct: 319 GLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDA 378

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
            R+++EM    V  D++++  LI  L K G + +  + FR+MK  G+  D  IY +LI G
Sbjct: 379 ERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGG 438

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
               G + +A  +  ++++ G   D+  YN+I+ GLC+ K   +A +LF    +  + PD
Sbjct: 439 FCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPD 498

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDV 400
           F T   L+   ++ G M+    L   M  ++ ++  D+  +   + G  K   +    ++
Sbjct: 499 FYTFTTLINGYSKDGNMNKAVTLFEMM--IQRNLKPDVVTYNTLIDGFCKGSEMEKVNEL 556

Query: 401 FEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           + ++  +  Y +   Y IL+     +G V +A  L+ +M     E   ++ +  ++ +  
Sbjct: 557 WNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCR 616

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           +G+ ++A E  + ++    VP    YN L  G  K   +D A  LV   + N    P   
Sbjct: 617 AGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNK-MENSGLLPDVI 675

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            Y + +    R G  ++   ++ +M + G  P+    +++I+G      L+EA +V   +
Sbjct: 676 TYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEM 735

Query: 580 RER 582
            +R
Sbjct: 736 LQR 738



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/446 (22%), Positives = 192/446 (43%), Gaps = 49/446 (10%)

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
           +D    +++E+ +  V+ +V     +I  LCK  ++        +M+E G+  D   Y  
Sbjct: 235 VDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNT 294

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338
           LI     +G + +A +L+  +   G +  +  YN+II GLC+  ++ +A  + +  ++  
Sbjct: 295 LINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIG 354

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF--LVGKEERIMM 396
           ++PD +T N LLV C     M +  ++  +M      V  DL  F     L+ K   +  
Sbjct: 355 MSPDTATYNILLVECCRNDNMMDAERIFDEMPSQ--GVVPDLVSFSALIGLLSKNGCLDQ 412

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEV-------N 446
           AL  F ++K  G +    IY IL+G     G + +AL +  +M  +G  L+V       N
Sbjct: 413 ALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILN 472

Query: 447 SL--------------------------SFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L                          +F+  I  + + G++ +A      +I+ +  P
Sbjct: 473 GLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKP 532

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  YN L  G CK  E++    L  D +      P    Y + I   C  G   +   +
Sbjct: 533 DVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIY-PNHISYGILINGYCNMGCVSEAFRL 591

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
            +EM ++G     + C+ I+ G C+ G   +A +  +N+  + ++ +   I Y+ ++   
Sbjct: 592 WDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDG--ITYNTLINGF 649

Query: 601 MKKKTADLVLSGLKFFGLESKLKAKG 626
           +K++  D      + F L +K++  G
Sbjct: 650 IKEENMD------RAFALVNKMENSG 669



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/442 (21%), Positives = 198/442 (44%), Gaps = 9/442 (2%)

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNL--CKPDVFA 205
           +KH+  S++A+ + L R+     A  V   M  +  ++  +EI+E +      C  +   
Sbjct: 128 FKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSR-VEIVESLVLTYGNCGSNPLV 186

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           +  ++R     R L      +  +K   +   + A  +L+ GL K G V    E+++E+ 
Sbjct: 187 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 246

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
            +G+ ++     ++I  L    K+      L D+ + G   D+  YN++I   CR    +
Sbjct: 247 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 306

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +A++L +      L P   T N ++    + G+      +L +M  LK  ++ D   +  
Sbjct: 307 EAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM--LKIGMSPDTATYNI 364

Query: 386 FLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            LV   + + +M A  +F+E+  +G    +  ++ L+G L + G + +AL  F  M+   
Sbjct: 365 LLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAG 424

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           L  +++ ++I I     +G + EA +  ++++E   V  V  YN +  GLCK   +  A 
Sbjct: 425 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEAD 484

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            L  + +      P  + +   I    + G   K + +   M Q    P+ V  + +I G
Sbjct: 485 ELFTE-MTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDG 543

Query: 563 MCKHGTLEEARKVFTNLRERKL 584
            CK   +E+  +++ ++  R++
Sbjct: 544 FCKGSEMEKVNELWNDMISRRI 565



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 161/390 (41%), Gaps = 63/390 (16%)

Query: 117 VTPDLV---AEVLKVENNPTL--ASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA 171
           V PDLV   A +  +  N  L  A K+F    K  G   +   Y  L     RN +   A
Sbjct: 390 VVPDLVSFSALIGLLSKNGCLDQALKYFR-DMKNAGLAPDNVIYTILIGGFCRNGVMSEA 448

Query: 172 DQVPELMDSQG-------------------RIAEMLEILEKMRRNLCKPDVFAYTAMIRV 212
            +V + M  QG                    ++E  E+  +M      PD + +T +I  
Sbjct: 449 LKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLING 508

Query: 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
            + + N++  + ++E M +  ++ DV+ Y TLI G CKG  + + +EL+ +M    I  +
Sbjct: 509 YSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPN 568

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              YG+LI G    G V +A  L  ++V+ G+ A +   N+I+ G CR     KA +   
Sbjct: 569 HISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLS 628

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392
             +   + PD  T N L+    +   MD  F L+ +ME                      
Sbjct: 629 NMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGL------------------ 670

Query: 393 RIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSF 450
                              V  YN+++      G +++A  +  KM  RG+N + +  ++
Sbjct: 671 ----------------LPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRS--TY 712

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVP 480
           +  I  HV   ++ EA   H+++++   VP
Sbjct: 713 TSLINGHVTQNNLKEAFRVHDEMLQRGFVP 742



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 35/177 (19%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+  +Y  +I        +    R+W+EM +   EA ++   T++ G C+ G  V+  E 
Sbjct: 567 PNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEF 626

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN-------- 312
              M   GI+ D   Y  LI G + E  + +A  L+  + +SG   D+  YN        
Sbjct: 627 LSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSR 686

Query: 313 ---------------------------SIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
                                      S+I G        +A+++ +  +Q    PD
Sbjct: 687 QGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 743



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 55/126 (43%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G   +  E L  M      PD   Y  +I     E N+D    +  +M+   +  DV+ Y
Sbjct: 618 GNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITY 677

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++ G  + GR+     +  +M E G+  DR+ Y  LI G V +  + +A  +  +++ 
Sbjct: 678 NVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQ 737

Query: 302 SGYRAD 307
            G+  D
Sbjct: 738 RGFVPD 743


>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 924

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 172/377 (45%), Gaps = 6/377 (1%)

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y  MI       N+D    +  EM+ + ++A +  Y T++ G    G   +   +F  +K
Sbjct: 414 YGNMIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLK 473

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           E G       YG LI      GK+ KA ++ K +  +G + ++  Y+ +I G  ++K + 
Sbjct: 474 ECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWA 533

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
            A+ +FE  V+D L PD    N ++     MG MD    ++ +M+K +    +    F  
Sbjct: 534 NAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTS--RTFMP 591

Query: 386 FLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
            + G  +   +  ALDVF+ ++  G   +V  +N L+  L+E  +++KA+ +  +M    
Sbjct: 592 IIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAG 651

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502
           +  N  +++  +  +   GD  +A E   K+ +      V  Y  L K  CK G + +A+
Sbjct: 652 VSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSAL 711

Query: 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
            + ++         T F Y + I    R G+  +  +++ +M Q G  P+    ++ I+ 
Sbjct: 712 AVTKEMSAQNIPRNT-FVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINA 770

Query: 563 MCKHGTLEEARKVFTNL 579
            CK G +  A K+   +
Sbjct: 771 CCKAGDMLRASKMMEEM 787



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/428 (21%), Positives = 192/428 (44%), Gaps = 11/428 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G +    +  E MR    +P    YT++I   A  R+++  L    +MK++ VE  ++ 
Sbjct: 319 RGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKMKEEGVEMSLVT 378

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  ++ G  K G        F+E K+    ++  IYG +I        + +A  L++++ 
Sbjct: 379 YSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQAEALVREME 438

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G  A + IY++++ G   V   +K   +FE   +   AP   +   L+   A++G++ 
Sbjct: 439 GEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAKVGKIS 498

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNI 417
              ++   ME     +  +++ +   + G  K +    A  +FE++   G    V +YN 
Sbjct: 499 KALEVSKMMESA--GIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNN 556

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++ A   +G + +A+ +  +M+       S +F   I     +G++  A +  + +    
Sbjct: 557 IIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSG 616

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS-GEAEK 536
            +P+V  +N L  GL +  +++ A+ ++ D +      P E  Y  TI+H   + G+  K
Sbjct: 617 CIPTVHTFNALILGLVEKRQMEKAIEIL-DEMALAGVSPNEHTYT-TIMHGYAALGDTGK 674

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
             E   ++  EG   +     A++   CK G ++ A  V   +  + +    NT VY+ I
Sbjct: 675 AFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNI--PRNTFVYN-I 731

Query: 597 LIEHMKKK 604
           LI+   ++
Sbjct: 732 LIDGWARR 739



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 154/381 (40%), Gaps = 37/381 (9%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           KP    Y  M+   A   ++    + +E M+   +E     Y +LI     G  +     
Sbjct: 303 KPSRREYGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALS 362

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
             R+MKE G+ +    Y +++ G    G    A    K+  D     +  IY ++I   C
Sbjct: 363 CARKMKEEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYC 422

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +    D+A  L      + +       + +         MD +                 
Sbjct: 423 QTCNMDQAEALVREMEGEGIDAPIDIYHTM---------MDGY----------------- 456

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
                  +VG EE+    L VFE LK  G++ SV  Y  L+    ++G++ KAL +   M
Sbjct: 457 ------TMVGNEEK---CLTVFERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMM 507

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
               ++ N  ++S+ I   ++  D   A      +++    P V  YN + +  C +G +
Sbjct: 508 ESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTM 567

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D A+ +V++ +      PT   +   I    R+GE ++ ++V + M + GC P     +A
Sbjct: 568 DRAICMVKE-MQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNA 626

Query: 559 IISGMCKHGTLEEARKVFTNL 579
           +I G+ +   +E+A ++   +
Sbjct: 627 LILGLVEKRQMEKAIEILDEM 647



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/415 (20%), Positives = 166/415 (40%), Gaps = 31/415 (7%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G KHN  +Y+ L      N   +  D            A    I E + ++  KPDV  Y
Sbjct: 511 GIKHNMKTYSMLI-----NGFLKLKDW-----------ANAFAIFEDVVKDGLKPDVVLY 554

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +IR       +D  + + +EM+K+        ++ +I G  + G + R  ++F  M+ 
Sbjct: 555 NNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRR 614

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           +G +     +  LI GLV + ++ KA ++L ++  +G   +   Y +I+ G   +    K
Sbjct: 615 SGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGK 674

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A++ F     + L  D  T   LL  C + GRM +   +  +M          +      
Sbjct: 675 AFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILID 734

Query: 387 LVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
              +   +  A D+ +++K  G    +  Y   + A  + G++ +A  +  +M    ++ 
Sbjct: 735 GWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMMEEMETSGVKP 794

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM-- 503
           N  +++  I     +    +A  C  ++      P  A Y+CL   L     +  A +  
Sbjct: 795 NVKTYTTLIHGWARASLPEKALRCFQEMKLAGLKPDKAVYHCLMTALLSRATVTEAYVRP 854

Query: 504 -LVRDCLGNVASG-----PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
            ++  C   + SG      T   ++ ++  + R+G        L E  Q+  PP+
Sbjct: 855 GILSICKEMIESGLIVDMGTAVHWSKSLRKIERTGGE------LTEALQKTFPPD 903


>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 889

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 35/385 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + E  ++ + ++     P+   Y  ++      R +D    ++EEM+K  +  D + 
Sbjct: 349 EGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGIT 408

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  L+ G  K GR   G  L +++   G+L DR+++ + + GL   G++ +A + L D++
Sbjct: 409 FNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDML 468

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G    +  +NS+I    +    DKA++ +++ V   L P  ST + LL+  +  GR+ 
Sbjct: 469 EKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQ 528

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
              +L+ QM +   SV                   MA                 + +L+ 
Sbjct: 529 EATELIGQMIEKGLSVNN-----------------MA-----------------FTVLLD 554

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G+V  A  L+G+M    +  + ++FS  I    + G + EA     +++    +P
Sbjct: 555 KFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIP 614

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +  AYN L  G CK G+++ A+ L +  + +    P  F   + I  +C+ G     I V
Sbjct: 615 NNFAYNSLICGFCKCGKLNEALKLEK-VMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINV 673

Query: 541 LNEMTQEGCPPNEVICSAIISGMCK 565
             +M Q G  P+ +  + +I+G CK
Sbjct: 674 FMDMHQTGLSPDIITYNTLINGYCK 698



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 177/416 (42%), Gaps = 16/416 (3%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
            +L  M +  C+P+ FAY  +I            L  +  M +      V+ + T+I   
Sbjct: 287 SLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAF 346

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           CK G VV   +LF  +KE G   +  +Y  L+ G V   ++ +A  L +++   G   D 
Sbjct: 347 CKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDG 406

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             +N ++ G  +  + +   +L +      L PD S  +  +      GR+D   + L  
Sbjct: 407 ITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMD 466

Query: 369 M--EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELK-----GKGYSSVPIYNILMGA 421
           M  + L  S+ A     F  ++    +  +    FE  K     G   S     ++LMG 
Sbjct: 467 MLEKGLSPSIIA-----FNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGL 521

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
            +  G +++A  L G+M    L VN+++F++ +    + GD++ A     ++      P 
Sbjct: 522 SIN-GRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPD 580

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V A++    GL K G ++ A  +  + L      P  F Y   I   C+ G+  + +++ 
Sbjct: 581 VVAFSAFIDGLSKQGLVEEAYNVFLEMLRK-GLIPNNFAYNSLICGFCKCGKLNEALKLE 639

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             M   G  P+    + II G+CK G +  A  VF ++ +  L    + I Y+ ++
Sbjct: 640 KVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGL--SPDIITYNTLI 693



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 173/412 (41%), Gaps = 15/412 (3%)

Query: 196 RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVV 255
           R++ +  ++   A I VL   R+ D    +W      + E+D     +L+          
Sbjct: 159 RHVAQDVIWWVIARIGVL---RSGDLVEFMWR--GHHVYESDFSVLDSLMRAFVNAEMGF 213

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
           +  E+   M+E G+    +   +L + L+  G  G    L KD++  G +     ++ II
Sbjct: 214 QALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGII 273

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN---FFKLLAQMEKL 372
            G CR         L  +  +    P+    N ++  C   GR  +   +F L+  +E+ 
Sbjct: 274 LGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLM--IERG 331

Query: 373 KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKA 431
                            KE  ++ A  +F+ LK  G+S   I YN LM   +++ E+ +A
Sbjct: 332 CNPTVVTFNTVINAFC-KEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQA 390

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491
             L+ +MR   +  + ++F+I +  H + G   +       I  +  +P  + ++    G
Sbjct: 391 NMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSG 450

Query: 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
           LC  G +D AM  + D L    S P+   +   I    ++G  +K  E    M   G  P
Sbjct: 451 LCWAGRLDEAMEFLMDMLEKGLS-PSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTP 509

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK 603
           +   CS+++ G+  +G L+EA ++   + E+ L    N + +  +L +  K+
Sbjct: 510 SPSTCSSLLMGLSINGRLQEATELIGQMIEKGL--SVNNMAFTVLLDKFFKR 559



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 10/225 (4%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +  QG + E   +  +M R    P+ FAY ++I        L+  L++ + M+   +  D
Sbjct: 591 LSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPD 650

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           +     +I GLCK GR+     +F +M + G+  D   Y  LI G      +  A +L+ 
Sbjct: 651 IFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVN 710

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV-CCAEM 356
            +  SG   DL  YN  I G C  ++ ++A  + +  V   + P+  T N +L   C+++
Sbjct: 711 RMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVPNTVTYNSMLNGVCSDI 770

Query: 357 GRMDNFFKLLAQMEKLKF---SVAAD--LEKFFEFLVGKEERIMM 396
             +D    L A++ K+ F    V A+  L +F++   G  ER +M
Sbjct: 771 --LDRAMILTARLLKMAFVPNVVTANLLLSQFYK--QGMPERTLM 811


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 188/407 (46%), Gaps = 32/407 (7%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  +   ++ +M      PD   Y+ +I  L     ++   ++++EMK++ +  DV  Y
Sbjct: 101 GKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTY 160

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+   CK G + +    F EM+++G   +   Y  LI   +   K+ +A ++ + ++ 
Sbjct: 161 TTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLS 220

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL-APDFSTVNPLLVCCAEMGRMD 360
           +G   ++  Y ++I G C+  + +KA +++     D +  PD                +D
Sbjct: 221 NGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPD----------------VD 264

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
            +F+++    +LK           + L  K  ++  A D+ E +  +G   +  IY+ L+
Sbjct: 265 IYFRIVDS--ELKEPNVVTYGALVDGLC-KAHKVKEARDLLETMSLEGCEPNQIIYDALI 321

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               ++G++ +A  +F KM G     N  ++S  I    +   +  A +   K++E S  
Sbjct: 322 DGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCA 381

Query: 480 PSVAAYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           P+V  Y  +  GLCK+G+ D A     MM  + C  NV +      Y   I    ++G  
Sbjct: 382 PNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVT------YTAMIDGFGKAGRV 435

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           ++ +E+L  MT +GC PN +    +I+  C  G L++A K+   +++
Sbjct: 436 DRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQ 482



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 177/388 (45%), Gaps = 33/388 (8%)

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           + EM E G+++++         L   GK  KA +++++++  G+  D   Y+ +IG LC 
Sbjct: 75  YNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCN 134

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD---NFFKLLAQMEKLKFSVA 377
             + +KA++LF+   ++ + PD  T   LL    ++G ++   N+F  + Q +    +V 
Sbjct: 135 ASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQ-DGCAPNVV 193

Query: 378 ADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFG 436
                   +L  K  ++  A ++FE +   G   ++  Y  L+    + GE +KA  ++ 
Sbjct: 194 TYTALIHAYL--KTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYA 251

Query: 437 KMRGLNLEVNSLSFSIAIQCH-------VESGDILEA-CECHN-----KIIEMSQV---- 479
           +M+   +++  +     I          V  G +++  C+ H       ++E   +    
Sbjct: 252 RMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCE 311

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+   Y+ L  G CK+G++D A  +    LG+  S P  + Y+  I  + +    +  ++
Sbjct: 312 PNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCS-PNVYTYSSLIDKLFKDKRLDLALK 370

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           VL +M +  C PN VI + ++ G+CK G  +EA ++   + E+      N + Y  ++  
Sbjct: 371 VLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCY--PNVVTYTAMIDG 428

Query: 600 HMKKKTADLVLSGLKFFGLESKLKAKGC 627
             K    D  L  L+       + +KGC
Sbjct: 429 FGKAGRVDRCLELLQL------MTSKGC 450



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 151/327 (46%), Gaps = 12/327 (3%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ E  ++LE M    C+P+   Y A+I        LD    V+ +M       +V  Y 
Sbjct: 294 KVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYS 353

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +LI  L K  R+    ++  +M EN    +  IY  +++GL   GK  +A  L+  + + 
Sbjct: 354 SLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEK 413

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   ++  Y ++I G  +  + D+  +L ++      AP+F T   L+  C   G +D+ 
Sbjct: 414 GCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDA 473

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSV-PIYNILMGA 421
            KLL +M++  +     +  + + + G     + +L +  EL   G   + P+Y +L+  
Sbjct: 474 HKLLEEMKQTYW--PKHIGMYRKVIEGFSHEFVASLGLLAELSEDGSVPILPVYKLLIDN 531

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVN----SLSFSIAIQCHVESGDILEACECHNKIIEMS 477
            ++ G ++ AL L  ++   +        SL  S+ + C V+     +A + ++ +    
Sbjct: 532 FIKAGRLEMALELHEELSSFSAAYQNTYVSLIESLTLACKVD-----KAFKLYSDMTRRG 586

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMML 504
            VP ++   CL KGL ++G+ + A+ L
Sbjct: 587 FVPELSMLVCLIKGLLRVGKWEEALQL 613



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/455 (21%), Positives = 190/455 (41%), Gaps = 48/455 (10%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           +Q G   N  +Y AL +   +      A+++ E+M S G                C P++
Sbjct: 184 QQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNG----------------CVPNI 227

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKD-----------------LVEADVMAYVTLIM 246
             YTA+I         +   +++  MK D                 L E +V+ Y  L+ 
Sbjct: 228 VTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVD 287

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
           GLCK  +V    +L   M   G   ++ IY  LI+G    GK+ +A ++   ++  G   
Sbjct: 288 GLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSP 347

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           ++  Y+S+I  L + K+ D A K+    +++  AP+      ++    ++G+ D  ++L+
Sbjct: 348 NVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLM 407

Query: 367 AQMEKLK-----FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
             ME+        +  A ++ F     GK  R+   L++ + +  KG + +   Y +L+ 
Sbjct: 408 LMMEEKGCYPNVVTYTAMIDGF-----GKAGRVDRCLELLQLMTSKGCAPNFITYRVLIN 462

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
                G +  A  L  +M+      +   +   I+    S + + +     ++ E   VP
Sbjct: 463 HCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGF--SHEFVASLGLLAELSEDGSVP 520

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            +  Y  L     K G ++ A+ L  +   +  S   +  Y   I  +  + + +K  ++
Sbjct: 521 ILPVYKLLIDNFIKAGRLEMALELHEEL--SSFSAAYQNTYVSLIESLTLACKVDKAFKL 578

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
            ++MT+ G  P   +   +I G+ + G  EEA ++
Sbjct: 579 YSDMTRRGFVPELSMLVCLIKGLLRVGKWEEALQL 613


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 119/481 (24%), Positives = 199/481 (41%), Gaps = 74/481 (15%)

Query: 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASY--------NALAYCLSRNNLF---RA 170
           V EVL++   P+ A +FF+WA  + G+ HN  SY         A    ++RN LF   R 
Sbjct: 89  VFEVLRLIKTPSKALQFFNWA-PELGFTHNDQSYFLMLEILGRARNLNVARNFLFSIKRR 147

Query: 171 ADQVPELMD-----------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL 219
           ++   +L D             G   E +++   M+     P V  + +++ +L      
Sbjct: 148 SNGTVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRT 207

Query: 220 DACLRVWEEMKKDL-VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
           +    V++EM     V  D   +  LI G CK   V  G   F+EM       D   Y  
Sbjct: 208 NMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNT 267

Query: 279 LIEGLVGEGKVGKACDLLKDLV--DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
           L++GL   GKV  A +++  +V   +    D+  Y +++ G C   + D+A  +FE  V 
Sbjct: 268 LVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVS 327

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
             L P+  T N L+    E+ ++D                   +++ FE  +G       
Sbjct: 328 KGLKPNEITYNTLIKGLCEVQKIDK------------------IKQIFEGALG------- 362

Query: 397 ALDVFEELKGKGYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453
                    G G+  +P     N LM A    G +  AL +F KM  LN+  +S ++S+ 
Sbjct: 363 ---------GGGF--IPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVL 411

Query: 454 IQCHVESGDILEACECHNKIIEMSQV-------PSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           I+   + G+   A +  +++ E   +       P VAAY  + + LC+ G+   A  + R
Sbjct: 412 IRNLCQRGNFERAEQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFR 471

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
             +      P  FK  + I   CR G  E   E+L  M +    P+     ++I G+ + 
Sbjct: 472 QLMKRGTQDPLSFK--ILIKGHCREGTFEAGYELLVLMLRRDFVPDLETYQSLIDGLLQK 529

Query: 567 G 567
           G
Sbjct: 530 G 530



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 118/281 (41%), Gaps = 6/281 (2%)

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            +NS+I    +   F ++ ++F       ++P   T N LL+   + GR +    +  +M
Sbjct: 158 FFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEM 217

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIG 426
               + V  D   F   + G  K   +      F+E+ + K    +  YN L+  L   G
Sbjct: 218 LS-TYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAG 276

Query: 427 EVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
           +V  A  +   M  +  NL  + ++++  ++ +    +I EA     +++     P+   
Sbjct: 277 KVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEIT 336

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN L KGLC++ +ID    +    LG     P        +   C +G     +EV  +M
Sbjct: 337 YNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKM 396

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
                 P+    S +I  +C+ G  E A ++F  L E+++L
Sbjct: 397 MVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEIL 437



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 95/202 (47%), Gaps = 6/202 (2%)

Query: 381 EKFFEFLV---GKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
           ++FF  L+   GK      ++ VF  +K  G S SV  +N L+  LL+ G    A  +F 
Sbjct: 156 DRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFD 215

Query: 437 KM-RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
           +M     +  ++ +F+I I+   ++  + E      ++      P +  YN L  GLC+ 
Sbjct: 216 EMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRA 275

Query: 496 GEIDAAMMLVRDCLGNVAS-GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
           G+++ A  +V   +    +  P    Y   +   C   E ++ + V  EM  +G  PNE+
Sbjct: 276 GKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEI 335

Query: 555 ICSAIISGMCKHGTLEEARKVF 576
             + +I G+C+   +++ +++F
Sbjct: 336 TYNTLIKGLCEVQKIDKIKQIF 357



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 80/196 (40%), Gaps = 18/196 (9%)

Query: 432 LYLFGKMRGLNLEVNSLSFSIA-----------------IQCHVESGDILEACECHNKII 474
           L + G+ R LN+  N L FSI                  I+ + ++G   E+ +  N + 
Sbjct: 125 LEILGRARNLNVARNFL-FSIKRRSNGTVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMK 183

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
            +   PSV  +N L   L K G  + A  +  + L      P  + + + I   C++   
Sbjct: 184 SVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMV 243

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           ++      EM++  C P+ V  + ++ G+C+ G +  A  V   + ++      + + Y 
Sbjct: 244 DEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYT 303

Query: 595 EILIEHMKKKTADLVL 610
            ++  +  K   D  L
Sbjct: 304 TLVRGYCMKHEIDEAL 319



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 10/166 (6%)

Query: 153 ASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRV 212
           A+Y+ L   L +   F  A+Q+ + +  +       EIL  +R + C P V AY +M   
Sbjct: 406 ATYSVLIRNLCQRGNFERAEQLFDELSEK-------EIL--LRDDGCTPLVAAYKSMFEF 456

Query: 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           L          RV+ ++ K   + D +++  LI G C+ G    G+EL   M     + D
Sbjct: 457 LCRNGKTAKAERVFRQLMKRGTQ-DPLSFKILIKGHCREGTFEAGYELLVLMLRRDFVPD 515

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
              Y  LI+GL+ +G+   A   L+ ++ S +  +   ++SI+  L
Sbjct: 516 LETYQSLIDGLLQKGEPLVAYQTLEKMIKSSHVPETSTFHSILARL 561


>gi|449449102|ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Cucumis sativus]
 gi|449510601|ref|XP_004163711.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Cucumis sativus]
          Length = 849

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 133/543 (24%), Positives = 229/543 (42%), Gaps = 82/543 (15%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLS---RNNLFRAA-- 171
           + P +V  VL    +  +A  FF WA KQ GY+HN  ++NA+A  LS   +N   RA   
Sbjct: 87  LNPRIVETVLNGLGSWKIAHMFFTWASKQHGYRHNCNTFNAIASILSHARKNAPLRAVAM 146

Query: 172 -------DQVP-------ELMDSQGRIAEMLEILEKMRR-NLCKPDVFAYTAMIRVLAAE 216
                     P         + S G + E   + +++R  +LC P+ ++Y  ++ +L+  
Sbjct: 147 DVLNFRCSMTPRALGVFLRCLGSVGLVEEANYLFDQVRSMDLCIPNNYSYNCLLEILSKT 206

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL------ 270
            ++D+      EMK    E D      ++M  C  G+  +   +F +M E G +      
Sbjct: 207 NSIDSIENRLMEMKDFGWEVDKYTLTPVLMAYCNAGKFDKALIVFNDMHERGWVDGYVFS 266

Query: 271 -----------IDRAI-----------------YGVLIEGLVGEGKVGKACDLLKDLVDS 302
                      +DR +                 +  LI G V E +   A  LL+ ++  
Sbjct: 267 ILALAFSKWGEVDRTMQFIDRMEDQNLMLNGKTFYALIHGFVKESREDMALKLLEKMLKL 326

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G+  D+ IY+ +IGGLC+ + F+KA  LF       + PD   +  L+    E   +   
Sbjct: 327 GFTLDVSIYDVLIGGLCKKRAFEKAMALFFKMKMLGITPDVQILAKLVASSPEERVV--- 383

Query: 363 FKLLAQMEK--------------LKFSV-AADLEK---FFEFLVGKEERI--MMALDVFE 402
             LL +  K              LKF V A  +E      + ++G E R   +  LD+ +
Sbjct: 384 IMLLGERPKDINDEGMIFLFNSVLKFLVNAGKVESTCYLLQLMMGNESRSDNIHILDIHQ 443

Query: 403 ELKGKGYSSVPIYNILMGALLEIG---EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
             K K   +   +NI++  LL+     +   AL LF  M  L  E + L ++  I    +
Sbjct: 444 TFK-KLLPNTASFNIVIHGLLKTTSKLDQDAALSLFEDMVQLGCERDQLLYNNLIDALCK 502

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
           S  + E+ +    + +    P+   YN +   LC+  +   A+ L+R+  G+    P   
Sbjct: 503 SDRLKESYKLLRDMEQSRLQPTHFTYNSIFGCLCRREDTVGAIELLREMRGH-GHEPWIK 561

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
              L +  +C++G A +    L +M  EG  P+ V  SA + G+ K   L+ A ++F ++
Sbjct: 562 HSTLLVKQLCKNGRAIEASNFLADMVCEGFLPDIVSYSAAMDGLVKINKLDRALELFQDI 621

Query: 580 RER 582
             R
Sbjct: 622 CTR 624



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 148/328 (45%), Gaps = 4/328 (1%)

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
           H+ F+++  N    +  I+G+L      +     A  L +D+V  G   D  +YN++I  
Sbjct: 442 HQTFKKLLPNTASFNIVIHGLL--KTTSKLDQDAALSLFEDMVQLGCERDQLLYNNLIDA 499

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
           LC+  +  ++YKL     Q  L P   T N +  C           +LL +M        
Sbjct: 500 LCKSDRLKESYKLLRDMEQSRLQPTHFTYNSIFGCLCRREDTVGAIELLREMRGHGHEPW 559

Query: 378 ADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFG 436
                     + K  R + A +   ++  +G+   +  Y+  M  L++I ++ +AL LF 
Sbjct: 560 IKHSTLLVKQLCKNGRAIEASNFLADMVCEGFLPDIVSYSAAMDGLVKINKLDRALELFQ 619

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            +       + +S +I I+ + ++G + EA    +K+     VPS  +YN L    CK G
Sbjct: 620 DICTRGCRPDVVSHNILIKGYCKAGKVNEAYNFLHKMRVAGLVPSAVSYNLLINEWCKNG 679

Query: 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
           +ID A++ +   +      PT   Y   I   C SG  +    + NEM ++GC PN +  
Sbjct: 680 DIDKAILCLSQ-MNEENKKPTIISYTTLINGCCNSGRPDDAKILWNEMQEKGCSPNRITY 738

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKL 584
            AI+ G+CK G  +EA   + ++ E+++
Sbjct: 739 MAIVHGLCKCGKPDEALVYYHSMEEKEM 766



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 83/189 (43%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E  ++L  M ++  +P  F Y ++   L    +    + +  EM+    E  +    
Sbjct: 505 RLKESYKLLRDMEQSRLQPTHFTYNSIFGCLCRREDTVGAIELLREMRGHGHEPWIKHST 564

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            L+  LCK GR +       +M   G L D   Y   ++GLV   K+ +A +L +D+   
Sbjct: 565 LLVKQLCKNGRAIEASNFLADMVCEGFLPDIVSYSAAMDGLVKINKLDRALELFQDICTR 624

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G R D+  +N +I G C+  + ++AY          L P   + N L+    + G +D  
Sbjct: 625 GCRPDVVSHNILIKGYCKAGKVNEAYNFLHKMRVAGLVPSAVSYNLLINEWCKNGDIDKA 684

Query: 363 FKLLAQMEK 371
              L+QM +
Sbjct: 685 ILCLSQMNE 693



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 8/201 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E    L KMR     P   +Y  +I       ++D  +    +M ++  +  +++Y
Sbjct: 644 GKVNEAYNFLHKMRVAGLVPSAVSYNLLINEWCKNGDIDKAILCLSQMNEENKKPTIISY 703

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G C  GR      L+ EM+E G   +R  Y  ++ GL   GK  +A      + +
Sbjct: 704 TTLINGCCNSGRPDDAKILWNEMQEKGCSPNRITYMAIVHGLCKCGKPDEALVYYHSMEE 763

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              + D  +  ++I        F  A+ + + T++    PD +  N + +        D 
Sbjct: 764 KEMKPDSYVSVALIDAFISKHNFSMAFNILKETIEKGNIPDPTDKNYVTI-------KDA 816

Query: 362 FFKLLAQMEKLKFSVAADLEK 382
            FK L++ E+    V A +EK
Sbjct: 817 IFK-LSKDEQTGLEVKALIEK 836



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 80/191 (41%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GR  E    L  M      PD+ +Y+A +  L     LD  L +++++       DV++
Sbjct: 573 NGRAIEASNFLADMVCEGFLPDIVSYSAAMDGLVKINKLDRALELFQDICTRGCRPDVVS 632

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  LI G CK G+V   +    +M+  G++     Y +LI      G + KA   L  + 
Sbjct: 633 HNILIKGYCKAGKVNEAYNFLHKMRVAGLVPSAVSYNLLINEWCKNGDIDKAILCLSQMN 692

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +   +  +  Y ++I G C   + D A  L+    +   +P+  T   ++    + G+ D
Sbjct: 693 EENKKPTIISYTTLINGCCNSGRPDDAKILWNEMQEKGCSPNRITYMAIVHGLCKCGKPD 752

Query: 361 NFFKLLAQMEK 371
                   ME+
Sbjct: 753 EALVYYHSMEE 763


>gi|222631078|gb|EEE63210.1| hypothetical protein OsJ_18020 [Oryza sativa Japonica Group]
          Length = 975

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 146/628 (23%), Positives = 255/628 (40%), Gaps = 114/628 (18%)

Query: 76  PKTFQLQRHLSP------------IARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVA 123
           P++F      SP            +A  + D F +      P+   + ++LRR+  +L A
Sbjct: 18  PRSFSFSTSASPPPRAPVPASPSYLAHHLLDEFSR------PRATRDAARLRRLAAELTA 71

Query: 124 ----EVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRN---NLFR-AADQV- 174
                VL    +   A  FF WA  Q G++H+  S NA+A  L R+   +L R AAD + 
Sbjct: 72  PAAESVLLRLPSWRHALDFFRWAADQPGFRHSCYSLNAMASLLPRHQRAHLDRLAADAIS 131

Query: 175 PELMDSQGRIAEMLEIL-------------EKMRRNL-CKPDVFAYTAMIRVLA-AERNL 219
              + + G +  +L  L             +  R +  C P+ + Y  ++  LA A R  
Sbjct: 132 ARCLMTPGALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRAD 191

Query: 220 DACLRVWEEMKK-----------------------------------DLVEADVMAYVTL 244
           DA  R+ E + +                                   +L   D     TL
Sbjct: 192 DAQARLREMVARCGDGSVDKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHVLTTL 251

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           ++   K G+V    EL   M+  G+ +      VL+ G   +G+V KA D+   +V  G+
Sbjct: 252 MVAFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGF 311

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP----------------DFSTVNP 348
             DL +Y+ +I GLC+ K   +A KLF+      +AP                DF+ + P
Sbjct: 312 VVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDFAVIGP 371

Query: 349 LLVCCAEMGRMDNFFKLL-AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK 407
            +   AE  +  +   L    +E+L      ++E  ++ L      +     V  ++ G 
Sbjct: 372 FINENAEYLKSGSVVPLYNVVLEELVH--CGEVEAAYQLL---RSMVCGGQAVNNDVAGG 426

Query: 408 GY---------SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV 458
            +          +   +NI++  L ++ ++  AL L   M  L  +   L F+  I    
Sbjct: 427 AHMLHIREDAKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELC 486

Query: 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE 518
               + E     N++ ++   PS   YN L  G+C+  +  AA+ L+R+   N    P  
Sbjct: 487 NMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTN--GHPPW 544

Query: 519 FKYALTIL-HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
            K    ++  +C SG   + ++ L+ M Q G  P+ V  SA ++GMC  G +++A  +F 
Sbjct: 545 IKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFR 604

Query: 578 NLRERKLLTEANTIVYDEILIEHMKKKT 605
           ++  +  L +   +V   ILI   +K +
Sbjct: 605 DISCKYYLPD---VVAHNILINGFRKSS 629



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 103/503 (20%), Positives = 194/503 (38%), Gaps = 92/503 (18%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++   +E+L  M     +      + ++     +  +D  + ++ +M       D+  Y
Sbjct: 259 GKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMY 318

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGI-----LIDRAI--------------------- 275
             LI GLC+   + R  +LF+EMK +G+     L+ + I                     
Sbjct: 319 SVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDFAVIGPFINENAE 378

Query: 276 ----------YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI--------------- 310
                     Y V++E LV  G+V  A  LL+ +V  G   +  +               
Sbjct: 379 YLKSGSVVPLYNVVLEELVHCGEVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHIREDAKP 438

Query: 311 ----YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
               +N ++ GLC+VK+ D A  L +  +           N L+     M R++  + + 
Sbjct: 439 NSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGYGIF 498

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY----------------- 409
            QM+ L  + +        + + + +    ALD+  E++  G+                 
Sbjct: 499 NQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFS 558

Query: 410 -------------------SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
                                +  Y+  M  +   GEV  AL+LF  +       + ++ 
Sbjct: 559 GRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVAH 618

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +I I    +S  + EA +   +++E    PSV  YN +    CK G I+ A+  + D + 
Sbjct: 619 NILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYL-DKMV 677

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
                PT   Y   I   C +G  ++ I++  EM ++GC PN +  +A I+G+ K G +E
Sbjct: 678 YEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIE 737

Query: 571 EARKVFTNLRERKLLTEANTIVY 593
            A   F  +  +    +  +++Y
Sbjct: 738 TALTYFEEMVTKGFELDTFSLLY 760



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 111/258 (43%), Gaps = 20/258 (7%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           +YN+L Y + R    +AA                L++L +M+ N   P +   T M++ L
Sbjct: 512 TYNSLFYGICRRKDPKAA----------------LDLLREMQTNGHPPWIKNCTEMVQQL 555

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
                +   ++  + M +     D++ Y   + G+C  G V     LFR++     L D 
Sbjct: 556 CFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDV 615

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             + +LI G     K+ +A  +++++++ G    +  YN +I   C+  + +KA    + 
Sbjct: 616 VAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDK 675

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KE 391
            V ++  P   T   L+      GR D   KL  +M +     A +   +  F+ G  K 
Sbjct: 676 MVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREK--GCAPNNIAYTAFINGLRKC 733

Query: 392 ERIMMALDVFEELKGKGY 409
            RI  AL  FEE+  KG+
Sbjct: 734 GRIETALTYFEEMVTKGF 751



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 1/209 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GR+ E ++ L+ M +    PD+  Y+A +  +     +D  L ++ ++       DV+A
Sbjct: 558 SGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVA 617

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  LI G  K  ++    ++  EM E G+      Y ++I+     G++ KA   L  +V
Sbjct: 618 HNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMV 677

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
               +  +  Y S+I G C   + D+A KL+    +   AP+       +    + GR++
Sbjct: 678 YEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIE 737

Query: 361 NFFKLLAQMEKLKFSVAA-DLEKFFEFLV 388
                  +M    F +    L  F  FL+
Sbjct: 738 TALTYFEEMVTKGFELDTFSLLYFINFLI 766



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 57/119 (47%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI + +  L+KM     +P V  YT++I    +    D  +++W EM++     + +AY
Sbjct: 664 GRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAY 723

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
              I GL K GR+      F EM   G  +D       I  L+  G   K C+LLK+++
Sbjct: 724 TAFINGLRKCGRIETALTYFEEMVTKGFELDTFSLLYFINFLISNGYPMKGCELLKEVL 782



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 7/140 (5%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S GR  E +++  +MR   C P+  AYTA I  L     ++  L  +EEM     E D  
Sbjct: 697 SAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEMVTKGFELDTF 756

Query: 240 AYVTLIMGLCKGGRVVRGHELFRE-MKENGILIDRAIYGVLIEGLVGEGKVG-KACDLLK 297
           + +  I  L   G  ++G EL +E ++++    +  + G++ E +V   K G  + D+LK
Sbjct: 757 SLLYFINFLISNGYPMKGCELLKEVLQKDTYGNNLKMVGLINEAVVELSKDGITSSDILK 816

Query: 298 DLVDSGYRADLGIYNSIIGG 317
             VD  Y       NS++ G
Sbjct: 817 -FVDKAYTG----VNSVVPG 831


>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
          Length = 905

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 177/399 (44%), Gaps = 37/399 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +    E++ +M  +     +  Y +M+      +N + CL V+E +K+   +  +++Y
Sbjct: 387 GNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISY 446

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+    K G+V +   + +EM+  GI  +   Y +LI G +       A  + ++++ 
Sbjct: 447 GCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLR 506

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           SG + D  IYN +I   C++   D+A  + E   ++ + P      P++           
Sbjct: 507 SGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIE---------- 556

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMG 420
                       ++VA D++               ALD  + ++  G   +V  YN L+ 
Sbjct: 557 -----------GYAVAGDMKS--------------ALDTLDLMRRSGCVPTVMTYNALIH 591

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L+   +V++A+ +  KM    +  N  +++I ++ +  SGDI +A E   KI E     
Sbjct: 592 GLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKL 651

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  Y  L +  CK G + +A+ + R+         T F Y + I    R G+  +  ++
Sbjct: 652 DVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT-FIYNILIDGWARRGDVWEAEDL 710

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           + +M ++G PPN    ++ I+  CK G ++ A KV   +
Sbjct: 711 MKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEM 749



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 180/447 (40%), Gaps = 106/447 (23%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
            E MR    +P+ F +T+++   A  R++   L   EEMK + +E  ++ Y  LI G  K
Sbjct: 320 FENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAK 379

Query: 251 ------GGRVVRGHELFREMKENGI-------------------------LIDR------ 273
                  G + R  EL REM+E+GI                         + +R      
Sbjct: 380 INDSHQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGF 439

Query: 274 ----AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
                 YG L+   V  GKV KA  + K++   G + +   Y+ +I G   +  F  A+ 
Sbjct: 440 KPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFA 499

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK--------------FS 375
           +FE  ++  L PD +  N L+    +MG MD    +L +M+K +              ++
Sbjct: 500 IFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYA 559

Query: 376 VAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYL 434
           VA D++               ALD  + ++  G   +V  YN L+  L+   +V++A+ +
Sbjct: 560 VAGDMKS--------------ALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSV 605

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
             KM    +  N  +++I ++ +  SGDI +A E   KI E      V  Y  L      
Sbjct: 606 LDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETL------ 659

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
                     +R C                    C+SG  +  + V  EM+ +  P N  
Sbjct: 660 ----------LRAC--------------------CKSGRMQSALAVTREMSFQKIPRNTF 689

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRE 581
           I + +I G  + G + EA  +   ++E
Sbjct: 690 IYNILIDGWARRGDVWEAEDLMKQMKE 716



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 16/217 (7%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           +YNAL + L R +                ++   + +L+KM      P+   YT ++R  
Sbjct: 585 TYNALIHGLVRKH----------------KVQRAVSVLDKMSIAGITPNEHTYTIIMRGY 628

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
           AA  ++      + ++K+  ++ DV  Y TL+   CK GR+     + REM    I  + 
Sbjct: 629 AASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT 688

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
            IY +LI+G    G V +A DL+K + + G   ++  Y S I   C+     +A K+ E 
Sbjct: 689 FIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEE 748

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
            V   L P+  T   L+   A +   D   K   +M+
Sbjct: 749 MVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMK 785



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 113/264 (42%), Gaps = 7/264 (2%)

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
           RA   + E     G +   L+ L+ MRR+ C P V  Y A+I  L  +  +   + V ++
Sbjct: 549 RAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDK 608

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           M    +  +   Y  ++ G    G + +  E F ++KE+G+ +D  IY  L+      G+
Sbjct: 609 MSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGR 668

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           +  A  + +++       +  IYN +I G  R     +A  L +   +D + P+  T   
Sbjct: 669 MQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTS 728

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM---ALDVFEELK 405
            +  C + G M    K++ +M  +         K +  L+    R+ +   AL  FEE+K
Sbjct: 729 YINACCKAGDMQRAEKVIEEMVDVGLKPNV---KTYTTLIKGWARVSLPDRALKCFEEMK 785

Query: 406 GKGYS-SVPIYNILMGALLEIGEV 428
             G       Y+ L+ +LL    V
Sbjct: 786 LAGLKPDEASYHCLVTSLLSRATV 809



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 121/288 (42%), Gaps = 5/288 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +   + ILEKM++   +P   A+  +I   A   ++ + L   + M++      VM Y
Sbjct: 527 GNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTY 586

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GL +  +V R   +  +M   GI  +   Y +++ G    G +GKA +    + +
Sbjct: 587 NALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKE 646

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           SG + D+ IY +++   C+  +   A  +        +  +    N L+   A  G +  
Sbjct: 647 SGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWE 706

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
              L+ QM+  +  V  ++  +  ++    K   +  A  V EE+   G   +V  Y  L
Sbjct: 707 AEDLMKQMK--EDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTL 764

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           +     +    +AL  F +M+   L+ +  S+   +   +    ++E 
Sbjct: 765 IKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEG 812


>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
 gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
          Length = 535

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 118/475 (24%), Positives = 211/475 (44%), Gaps = 39/475 (8%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGK-QKGYKHNFASYNALAYCLSRNNLFRAADQ 173
           +R+ P+ +  +++ + N  LA + FH+AGK    + HN+ +Y+A+ Y LSR   F   + 
Sbjct: 48  QRLFPNRLVAMIRRQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVES 107

Query: 174 VP-ELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
           +  EL DS                  C  D+F    +IR           L+ +  ++  
Sbjct: 108 LLLELQDSGIN---------------CSEDLF--ITVIRSYGLASRPKMALKTFLRIQTF 150

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN-GILIDRAIYGVLIEGLVGEGKVGK 291
            V   V +  TL+  L +  R    H LF+  K   G++ +     +LI+ L  +  V  
Sbjct: 151 GVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEG 210

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A  +  ++   G   ++  Y +I+GG         A ++F         PD +T   L+ 
Sbjct: 211 ARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDATTYTILMD 270

Query: 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY 409
              + GR  +  K++ +ME+    V  +   +   ++G  KE +   AL++  ++  K Y
Sbjct: 271 GYVKQGRFTDAVKVMDEMEE--NGVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKY 328

Query: 410 SSVP-------IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
             +P       + ++L G     G VK+A  ++ K+   N   ++   S  I    + G+
Sbjct: 329 --IPNSALCCKVIDVLCGE----GRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEGN 382

Query: 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522
           I EA +  N+  E   + S+  YN L  G+C++GE+  A  L  D L      P EF Y 
Sbjct: 383 IWEARKLFNEF-ERGTISSLLTYNTLIAGMCEMGELCEAARLWDDMLEK-GCVPNEFTYN 440

Query: 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
           + I    + G+A+++I+V+ EM  +GC  NE     ++ G+ K G  EE   + +
Sbjct: 441 MLIKGFLKVGKAKEVIKVVEEMLDKGCLLNESTYLILVEGLLKLGKREELLNILS 495



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 181/396 (45%), Gaps = 22/396 (5%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G + +  S N L   L +NN F +   + +   S+  +                P+VF  
Sbjct: 151 GVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVV---------------PNVFTC 195

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +I+ L  + +++   +V++EM    +  +V+ Y T++ G    G ++    +F E+ +
Sbjct: 196 NILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFD 255

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
           +G L D   Y +L++G V +G+   A  ++ ++ ++G   +   Y  II G C+ ++  +
Sbjct: 256 HGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGE 315

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLL-VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           A  L    ++    P+ +    ++ V C E GR+    K+  ++ K   +    +     
Sbjct: 316 ALNLLNDMLEKKYIPNSALCCKVIDVLCGE-GRVKEACKMWEKLLKKNCTPDNAITSTLI 374

Query: 386 FLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
             + KE  I  A  +F E +    SS+  YN L+  + E+GE+ +A  L+  M       
Sbjct: 375 HWLCKEGNIWEARKLFNEFERGTISSLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCVP 434

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N  ++++ I+  ++ G   E  +   ++++   + + + Y  L +GL K+G+ +  + ++
Sbjct: 435 NEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLNESTYLILVEGLLKLGKREELLNIL 494

Query: 506 RDCLGNVASGPTEFK-YALTILH-VCRSGEAEKIIE 539
                 ++SG  +FK + L + H V    E   I+E
Sbjct: 495 SMI---ISSGAVDFKAWNLFVPHFVSNVNEQANILE 527



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 83/167 (49%), Gaps = 1/167 (0%)

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           NIL+ AL +  +V+ A  +F +M  + +  N ++++  +  +V  GD++ A     ++ +
Sbjct: 196 NILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFD 255

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
              +P    Y  L  G  K G    A+  V D +      P +  Y + IL  C+  ++ 
Sbjct: 256 HGWLPDATTYTILMDGYVKQGRFTDAVK-VMDEMEENGVEPNDITYGVIILGYCKERKSG 314

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           + + +LN+M ++   PN  +C  +I  +C  G ++EA K++  L ++
Sbjct: 315 EALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEACKMWEKLLKK 361



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 46/110 (41%)

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           SV + N L   L +     +  +L +         P  F   + I  +C+  + E   +V
Sbjct: 155 SVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARKV 214

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            +EM   G  PN V  + I+ G    G +  A++VF  L +   L +A T
Sbjct: 215 FDEMPSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDATT 264


>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 726

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 124/519 (23%), Positives = 214/519 (41%), Gaps = 66/519 (12%)

Query: 89  ARFITDAFRKNQFQ--WGPQVVTELSKLRRV-TPDLVAEVLKVENNPTL--ASKFFHWAG 143
           +R + D  R  + +  W P++  +L  L RV +P  V  VL+ +    +  A +FF WA 
Sbjct: 59  SRLVRDTCRLLELRESWSPKLEAQLRHLLRVLSPPQVRAVLRAQARGDVRRAFEFFRWAD 118

Query: 144 KQKGYKHNFASYNALAYCLS----------------RNNLFRAADQVPELMDS---QGRI 184
           +Q  Y+H    ++ +   LS                R  + R  +Q  +LM S    G++
Sbjct: 119 RQWRYRHAPEVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKL 178

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
              + +L  M+++ C PD+      + VL     +D  L   E M++  VE DV  Y  L
Sbjct: 179 RSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCL 238

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I GLC   RVV   E+   M +NG   D+  Y  ++  L  E +V +   LL+ +     
Sbjct: 239 IKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRM----- 293

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           R D G++                             PD  T N L+   A+ G  D   +
Sbjct: 294 RNDAGLF-----------------------------PDQVTYNVLIHGLAKHGHADEALE 324

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGK---EERIMMALDVFEELKGKGYS-SVPIYNILMG 420
            L + E  +F V    E  +  +V       R+  A ++  E+  KG    V  Y+ ++ 
Sbjct: 325 FLRESEGKRFRVD---EVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVD 381

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
               IGE+ +A  +   M   + + N+++ +  +    + G   EA E  NK  E    P
Sbjct: 382 GFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTP 441

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           S   Y+ +  G  + G++  +  +V   L      PT  +  L I  +C+  +  +  + 
Sbjct: 442 SDITYSVVMHGFRREGKLKESCDVVVQMLQK-GFFPTTVEINLLIHALCKDRKPAEAKDF 500

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           + +   +GC  N V  + +I G  + G LE A  +  ++
Sbjct: 501 MEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDM 539



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 141/325 (43%), Gaps = 38/325 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+AE  EI+ +M    C+PDV  Y+ ++        LD   ++ + M K+  + + + +
Sbjct: 352 GRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTH 411

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLCK G+     EL  + +E         Y V++ G   EGK+ ++CD++  ++ 
Sbjct: 412 TALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQ 471

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G+       N +I  LC+ ++  +A    E            T+N +           N
Sbjct: 472 KGFFPTTVEINLLIHALCKDRKPAEAKDFME-----QCQSKGCTINVV-----------N 515

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELK-GKGYSSVPIYNILMG 420
           F  ++       FS   DLE               AL + +++     +  V  Y +++ 
Sbjct: 516 FTTVIH-----GFSRQGDLES--------------ALSLMDDMYLSNRHPDVVTYTVVVD 556

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           AL + G +K+A  L  KM    +    +++   I  + E G++ +      K++   ++ 
Sbjct: 557 ALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKGNLEDLLNLLEKMLARQEMK 616

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLV 505
           S  AYN + + LC  G+++ A  L+
Sbjct: 617 S--AYNQVVEKLCAFGKLNEAYSLL 639


>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 35/385 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + E  ++ + ++     P+   Y  ++      R +D    ++EEM+K  +  D + 
Sbjct: 139 EGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGIT 198

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  L+ G  K GR   G  L +++   G+L DR+++ + + GL   G++ +A + L D++
Sbjct: 199 FNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDML 258

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G    +  +NS+I    +    DKA++ +++ V   L P  ST + LL+  +  GR+ 
Sbjct: 259 EKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQ 318

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
              +L+ QM +   SV                   MA                 + +L+ 
Sbjct: 319 EATELIGQMIEKGLSVNN-----------------MA-----------------FTVLLD 344

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G+V  A  L+G+M    +  + ++FS  I    + G + EA     +++    +P
Sbjct: 345 KFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIP 404

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +  AYN L  G CK G+++ A+ L +  + +    P  F   + I  +C+ G     I V
Sbjct: 405 NNFAYNSLICGFCKCGKLNEALKLEK-VMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINV 463

Query: 541 LNEMTQEGCPPNEVICSAIISGMCK 565
             +M Q G  P+ +  + +I+G CK
Sbjct: 464 FMDMHQTGLSPDIITYNTLINGYCK 488



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 179/421 (42%), Gaps = 16/421 (3%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
            +L  M +  C+P+ FAY  +I            L  +  M +      V+ + T+I   
Sbjct: 77  SLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAF 136

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           CK G VV   +LF  +KE G   +  +Y  L+ G V   ++ +A  L +++   G   D 
Sbjct: 137 CKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDG 196

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             +N ++ G  +  + +   +L +      L PD S  +  +      GR+D   + L  
Sbjct: 197 ITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMD 256

Query: 369 M--EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELK-----GKGYSSVPIYNILMGA 421
           M  + L  S+ A     F  ++    +  +    FE  K     G   S     ++LMG 
Sbjct: 257 MLEKGLSPSIIA-----FNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGL 311

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
            +  G +++A  L G+M    L VN+++F++ +    + GD++ A     ++      P 
Sbjct: 312 SIN-GRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPD 370

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
           V A++    GL K G ++ A  +  + L      P  F Y   I   C+ G+  + +++ 
Sbjct: 371 VVAFSAFIDGLSKQGLVEEAYNVFLEML-RKGLIPNNFAYNSLICGFCKCGKLNEALKLE 429

Query: 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
             M   G  P+    + II G+CK G +  A  VF ++ +  L    + I Y+ ++  + 
Sbjct: 430 KVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGL--SPDIITYNTLINGYC 487

Query: 602 K 602
           K
Sbjct: 488 K 488



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +  QG + E   +  +M R    P+ FAY ++I        L+  L++ + M+   +  D
Sbjct: 381 LSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPD 440

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           +     +I GLCK GR+     +F +M + G+  D   Y  LI G      +  A +L+ 
Sbjct: 441 IFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVN 500

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
            +  SG   DL  YN  I G C  ++ ++A  + +  V 
Sbjct: 501 RMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVS 539



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 59/122 (48%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++ E L++ + MR     PD+F    +I  L  +  + + + V+ +M +  +  D++ Y
Sbjct: 420 GKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITY 479

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G CK   +V    L   M  +G   D   Y + I G     ++ +A  +L +LV 
Sbjct: 480 NTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVS 539

Query: 302 SG 303
           +G
Sbjct: 540 AG 541


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 190/408 (46%), Gaps = 19/408 (4%)

Query: 183 RIAEMLEI-LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA--DVM 239
           R ++ ++I L +M +  C P+VF+Y  +++ L  E      L + + M  D  +   DV+
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVV 200

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y T+I G  K G + + +  + EM + GIL +   Y  +I  L     + KA ++L  +
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSM 260

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V +G   +   YNSI+ G C   Q  +A    +    D + PD  T N L+    + GR 
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA-----LDVFEELKGKGYSSVPI 414
               K+   M K    +  ++  +   L G   +  +      LD+   ++   + +  +
Sbjct: 321 TEARKMFDSMTKR--GLKPEITTYGTLLQGYATKGALVEMHGLLDLM--VRNGIHPNHYV 376

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           ++IL+ A  + G+V +A+ +F KMR   L  +++++   I    +SG + +A     ++I
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI 436

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG-- 532
           +    P    YN L   LC   + D A  L+ + L       T F  ++   H C+ G  
Sbjct: 437 DERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSH-CKEGRV 495

Query: 533 -EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            E+EK+ ++   M + G  P+ +  S +I G C  G ++EA K+  ++
Sbjct: 496 IESEKLFDL---MVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASM 540



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 189/419 (45%), Gaps = 16/419 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + EM  +L+ M RN   P+ + ++ +I   A +  +D  + V+ +M++  +  D +
Sbjct: 351 TKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I  LCK GRV      F +M +  +     +Y  LI  L    K  KA +L+ ++
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +D G   D   +NSII   C+  +  ++ KLF++ V+  + PD  T + L+      G+M
Sbjct: 471 LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 530

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           D   KLLA M  +   +  D   +   + G  K  R+  AL +F E++  G S  +  YN
Sbjct: 531 DEATKLLASM--VSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588

Query: 417 ILMGALLEIGEVKKA--LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           I++  L +      A  LY+     G  LE+++ +  +   C     D  EA      + 
Sbjct: 589 IILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTD--EALRMFQNLC 646

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRS 531
                     +N +   L K+G  D A    +D    +++    P    Y+L   ++   
Sbjct: 647 LTDLQLETRTFNIMIGALLKVGRNDEA----KDLFAALSANGLVPDVRTYSLMAENLIEQ 702

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           G  E++ ++   M + GC  N  + ++I+  + + G +  A      + E+    EA+T
Sbjct: 703 GLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEAST 761



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 173/411 (42%), Gaps = 35/411 (8%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G+  E +  L+KM  +  +PDV  Y +++  L          ++++ M K  ++ ++ 
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEIT 340

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y TL+ G    G +V  H L   M  NGI  +  ++ +LI     +GKV +A  +   +
Sbjct: 341 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM 400

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G   D   Y ++IG LC+  + + A + FE  + + L+P     N L+       + 
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKW 460

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
           D   +L+ +M  L   +  D                                   +N ++
Sbjct: 461 DKAKELILEM--LDRGICLD--------------------------------TIFFNSII 486

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            +  + G V ++  LF  M  + ++ + +++S  I  +  +G + EA +    ++ +   
Sbjct: 487 DSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK 546

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P    YN L  G CKI  ++ A++L R+ + +    P    Y + +  + ++       E
Sbjct: 547 PDCVTYNTLINGYCKISRMEDALVLFRE-MESSGVSPDIITYNIILQGLFQTRRTAAAKE 605

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +   +T+ G        + I+ G+CK+   +EA ++F NL    L  E  T
Sbjct: 606 LYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 656



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/372 (20%), Positives = 163/372 (43%), Gaps = 11/372 (2%)

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
           D V  ++  Y  LI   C  GR+  G      + + G  +D   +  L++GL  + +   
Sbjct: 85  DEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSD 144

Query: 292 ACDL-LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD--DLAPDFSTVNP 348
           A D+ L+ +   G   ++  YN ++ GLC   +  +A +L ++   D  D  PD  +   
Sbjct: 145 AMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTT 204

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKG 406
           ++    + G +D  +    +M  L   +  ++  +   +    K + +  A++V   +  
Sbjct: 205 VINGFFKEGDLDKAYGTYHEM--LDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVK 262

Query: 407 KG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G   +   YN ++      G+ K+A+    KM    +E + ++++  +    ++G   E
Sbjct: 263 NGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTE 322

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A +  + + +    P +  Y  L +G    G +   M  + D +      P  + +++ I
Sbjct: 323 ARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL-VEMHGLLDLMVRNGIHPNHYVFSILI 381

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
               + G+ ++ + V ++M Q+G  P+ V    +I  +CK G +E+A + F  + + +L 
Sbjct: 382 CAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERL- 440

Query: 586 TEANTIVYDEIL 597
                IVY+ ++
Sbjct: 441 -SPGNIVYNSLI 451



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 4/126 (3%)

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           A+  L KGLC       AM +V   +  +   P  F Y + +  +C    +++ +E+L  
Sbjct: 128 AFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQM 187

Query: 544 MTQEG--CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
           M  +G  CPP+ V  + +I+G  K G L++A   +  + +R +L   N + Y  I+    
Sbjct: 188 MPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL--PNVVTYSSIIAALC 245

Query: 602 KKKTAD 607
           K +  D
Sbjct: 246 KAQAMD 251


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 187/417 (44%), Gaps = 12/417 (2%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G ++EM   L+ M RN   PD   +  M    A +  +D  + ++++M++  +   V+
Sbjct: 319 TEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVV 378

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI  LCK GRV      F +M   G+  D  ++  L+ GL    K  KA  L  ++
Sbjct: 379 NYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEV 438

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +D G R +   +N ++  LCR  +  +A +L ++ ++ D+ PD  + N L+      GR+
Sbjct: 439 LDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRI 498

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           D   KLL  M  +   +  D   +   L G  K  RI  A  +F E+  KG +  V  YN
Sbjct: 499 DEAAKLLDVM--VSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYN 556

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++  L +IG   +A  L+  M     + +  +++I +     +  + EA +    +   
Sbjct: 557 TILHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSK 616

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRSGE 533
                +   N +   L K G  + AM    D    +++    P    Y L   ++ + G 
Sbjct: 617 DLQLDIFTINIMIGALLKGGRKEDAM----DLFATISAYGLVPDVETYRLIAENLIKEGS 672

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            E++ E+ + M + G  PN  + +A++  +   G +  A    + L E+    EA+T
Sbjct: 673 LEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDIGRAGVYLSKLDEKNFSLEAST 729



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 190/428 (44%), Gaps = 17/428 (3%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +P+   YT +I    +       +++ +EM    ++ D + Y  L+  LCK GR      
Sbjct: 234 RPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARN 293

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           +F  +   GI     IYG+L+ G   EG + +    L  +V +G   D  I+N +     
Sbjct: 294 IFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYA 353

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +    D+A  +F+   Q  L+P       L+    ++GR+D+      QM  +   V  D
Sbjct: 354 KKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQM--INEGVTPD 411

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG 436
           +  F   + G    ++   A  +F E+  +G   +   +NILM  L   G V +A  L  
Sbjct: 412 IFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLID 471

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            M  +++  + +S++  +  H  +G I EA +  + ++ +   P    YN L  G CK  
Sbjct: 472 LMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKAR 531

Query: 497 EIDAAMMLVRDCL-GNVASGPTEFKYALTILH----VCRSGEAEKIIEVLNEMTQEGCPP 551
            ID A  L R+ L   +  G   +    TILH    + R  EA+   E+   M       
Sbjct: 532 RIDDAYSLFREMLMKGLTPGVVTYN---TILHGLFQIGRFCEAK---ELYLNMINNRRKC 585

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI-VYDEILIEHMKKKTADLVL 610
           +    + I++G+C++  ++EA K+F +L  + L  +  TI +    L++  +K+ A  + 
Sbjct: 586 DIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLF 645

Query: 611 SGLKFFGL 618
           + +  +GL
Sbjct: 646 ATISAYGL 653



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 184/405 (45%), Gaps = 7/405 (1%)

Query: 180 SQGRIAEMLEILEKMRRN---LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           ++ R  E LE++  M  +      P+V  YT +I  L   + +D    V++ M    V  
Sbjct: 176 NEKRAEEALELMHMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRP 235

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           +   Y  LI G    G+     ++ +EM  +G+  D  IY VL++ L   G+  +A ++ 
Sbjct: 236 NNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIF 295

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             L+  G +  + IY  ++ G        + +   ++ V++ ++PD    N +    A+ 
Sbjct: 296 DSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKK 355

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIY 415
             +D    +  +M +   S            + K  R+  A+  F ++  +G +  + ++
Sbjct: 356 AMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVF 415

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           + L+  L  + + +KA  LF ++    + +N+  F+I +      G ++EA    + ++ 
Sbjct: 416 SSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLR 475

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH-VCRSGEA 534
           +   P V +YN L  G C  G ID A  L+ D + ++   P EF Y  T+LH  C++   
Sbjct: 476 VDVRPDVISYNTLVDGHCLTGRIDEAAKLL-DVMVSIGLKPDEFTYN-TLLHGYCKARRI 533

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           +    +  EM  +G  P  V  + I+ G+ + G   EA++++ N+
Sbjct: 534 DDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNM 578



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 138/285 (48%), Gaps = 9/285 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E   +++ M R   +PDV +Y  ++        +D   ++ + M    ++ D   
Sbjct: 460 EGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFT 519

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TL+ G CK  R+   + LFREM   G+      Y  ++ GL   G+  +A +L  +++
Sbjct: 520 YNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMI 579

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           ++  + D+  Y  I+ GLCR    D+A+K+F+     DL  D  T+N ++    + GR +
Sbjct: 580 NNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKE 639

Query: 361 NFFKLLAQMEKLKFSVAADLEKF---FEFLVGKEERIMMALDVFEELKGKGYS-SVPIYN 416
           +   L A +    + +  D+E +    E L+ KE  +    ++F  ++  G + +  + N
Sbjct: 640 DAMDLFATIS--AYGLVPDVETYRLIAENLI-KEGSLEELDELFSAMEENGTAPNSRMLN 696

Query: 417 ILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVE 459
            L+  LL  G++ +A     K+  +  +LE ++ S  I+I    E
Sbjct: 697 ALVRWLLHRGDIGRAGVYLSKLDEKNFSLEASTTSMLISIYSRAE 741



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 146/338 (43%), Gaps = 6/338 (1%)

Query: 244 LIMGLCKGGRVVRGHE-LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           L+ GLC   RV    + L R M E G  ++   Y +L++GL  E +  +A +L+  + D 
Sbjct: 134 LLKGLCDAKRVDEATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADD 193

Query: 303 G---YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           G   +  ++  Y ++I GLC+ +  D+A  +F+  +   + P+  T   L+      G+ 
Sbjct: 194 GDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKW 253

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
               ++L +M          +       + K  R   A ++F+ L  KG    V IY IL
Sbjct: 254 KEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGIL 313

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +      G + +       M    +  +   F+I    + +   I EA    +K+ +   
Sbjct: 314 LHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWL 373

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
            P V  Y  L   LCK+G +D A++     + N    P  F ++  +  +C   + EK  
Sbjct: 374 SPGVVNYGALIDALCKLGRVDDAVLKFNQMI-NEGVTPDIFVFSSLVYGLCTVDKWEKAE 432

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           ++  E+  +G   N    + ++  +C+ G + EA+++ 
Sbjct: 433 KLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLI 470



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 38/245 (15%)

Query: 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMM 396
           +AP   T   L+ C   MGR+ + F     + K  +S+   +  F + L G    +R+  
Sbjct: 88  VAPSSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTV-IFGQLLKGLCDAKRVDE 146

Query: 397 ALDV-FEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
           A D+    +   G + +V  YNIL+  L      ++AL L   M                
Sbjct: 147 ATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMM---------------- 190

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
               + GD              S  P+V  Y  +  GLCK   +D A  + +  + +   
Sbjct: 191 ---ADDGD-------------GSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMI-DKGV 233

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P    Y   I     +G+ ++++++L EM+  G  P+ VI + ++  +CK+G   EAR 
Sbjct: 234 RPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARN 293

Query: 575 VFTNL 579
           +F +L
Sbjct: 294 IFDSL 298



 Score = 45.4 bits (106), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 19/162 (11%)

Query: 434 LFGKM-RGLNLEV--NSLSFSIAIQCHVESGDILEACECHNKIIEMS-QVPSVAAYNCLT 489
           LF +M R  +++V  +S +++I I C    G +         I++    + +   +  L 
Sbjct: 76  LFNRMIRECSVKVAPSSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLL 135

Query: 490 KGLCKIGEIDAAM-MLVR-----DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           KGLC    +D A  +L+R      C  NV S      Y + +  +C    AE+ +E+++ 
Sbjct: 136 KGLCDAKRVDEATDILLRRMPEFGCTLNVIS------YNILLKGLCNEKRAEEALELMHM 189

Query: 544 MTQEG---CPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           M  +G     PN V  + +I G+CK   ++ A+ VF ++ ++
Sbjct: 190 MADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDK 231


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 182/422 (43%), Gaps = 21/422 (4%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           NA +Y +    ++RA           GR  + +E+ ++M      P+   Y  MI     
Sbjct: 14  NAFSYNVVIAGMWRA-----------GRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIK 62

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
             +L+A  R+ ++M    ++ + + Y  L+ GLC+ GR+     L  EM    ++ D   
Sbjct: 63  GGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFT 122

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS--IIGGLCRVKQFDKAYKLFEV 333
           Y +L +GL   G       L    + +G    +G Y    ++ GLC+  +   A ++ + 
Sbjct: 123 YSILFDGLSRNGDSKAMLSLFGKYLKNG--VTIGDYTCSILLNGLCKDGKVSIAEEVLQS 180

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KE 391
            V   L P     N L+    + G ++  F    QM+     +  D   +   + G  K 
Sbjct: 181 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH--IKPDHITYNALINGLCKA 238

Query: 392 ERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
           ERI  A D+  E++  G + +V  +N L+ A    G+++K   +  +M+   L+ N +S+
Sbjct: 239 ERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSY 298

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
              +    ++G I EA    + +     +P+   YN +     + G  D A +LV     
Sbjct: 299 GSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKS 358

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
           N  S P+   Y L I  +C   +  +  E++N ++     P+ V  + +IS  C  G ++
Sbjct: 359 NGIS-PSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNID 417

Query: 571 EA 572
           +A
Sbjct: 418 KA 419



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/434 (23%), Positives = 183/434 (42%), Gaps = 25/434 (5%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G K N  +YN L   L R                 GR+ E   +L++M      PD F Y
Sbjct: 80  GLKPNAITYNVLLSGLCR----------------AGRMGETSALLDEMASQKMVPDGFTY 123

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           + +   L+   +  A L ++ +  K+ V         L+ GLCK G+V    E+ + +  
Sbjct: 124 SILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVN 183

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G++  R IY  LI G    G++  A      +     + D   YN++I GLC+ ++   
Sbjct: 184 AGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITN 243

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK--LKFSVAADLEKFF 384
           A  L      + + P   T N L+      G+++  F +L++M++  LK +V +      
Sbjct: 244 AQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVN 303

Query: 385 EFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
            F   K  +I  A+ + +++  K    +  +YN ++ A +E G   +A  L  KM+   +
Sbjct: 304 AFC--KNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGI 361

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             + +++++ I+       I EA E  N +     +P   +YN L    C  G ID A+ 
Sbjct: 362 SPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALD 421

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L +  +       T   Y   I  +  +G   ++  +  +M Q    P+  I + ++   
Sbjct: 422 L-QQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAY 480

Query: 564 CKHGT---LEEARK 574
            K+G     E+ RK
Sbjct: 481 SKYGNEIKAEDLRK 494



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 62/121 (51%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +Q +I+E  EI+  +  +   PD  +Y  +I       N+D  L + + M K  +++ V 
Sbjct: 377 NQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVR 436

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI GL   GR+     L+++M +N ++   AI+ +++E     G   KA DL K++
Sbjct: 437 TYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 496

Query: 300 V 300
           +
Sbjct: 497 L 497



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           P  F Y + I  + R+G     +EV +EMT+    PN +  + +I G  K G LE   ++
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 576 FTNLRERKLLTEANTIVYDEIL 597
              +    L  + N I Y+ +L
Sbjct: 73  RDQMVCHGL--KPNAITYNVLL 92



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P+  +YN +  G+ + G    A+  V D +   A  P    Y   I    + G+ E    
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVE-VFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFR 71

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT--IVYD 594
           + ++M   G  PN +  + ++SG+C+ G + E   +   +  +K++ +  T  I++D
Sbjct: 72  LRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFD 128


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 179/411 (43%), Gaps = 37/411 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G + + +    +MR+N  +PDV +Y+ +I +L     ++  +  + +M  + +  ++++
Sbjct: 388 HGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIIS 447

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + +LI GLC  G   +  EL  EM   GI  D      +++ L  EG+V +A D    ++
Sbjct: 448 FTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVI 507

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + D+  YN++I G C V + D++ K  +  V   L PD  T N LL    + GR++
Sbjct: 508 HIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVE 567

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
           +   L  +M +      A         + +  RI+ A +++ ++  +G    +  YN ++
Sbjct: 568 DALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVL 627

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
           G L E   V +AL +F  +R    E++  +FSI I   ++ G I EA    + ++    V
Sbjct: 628 GGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPV 687

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P V  Y+ + K                                    H+   G  E+   
Sbjct: 688 PDVITYSLMIKS-----------------------------------HI-EEGLLEESDN 711

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +   M + GC  +  + + I+  + + G +  A    T + E+    EA+T
Sbjct: 712 LFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYLTKIDEKNFSLEAST 762



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 194/444 (43%), Gaps = 35/444 (7%)

Query: 147 GYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRN---LCKP 201
           GY  +  SYNAL    C+ + +                   E LE+L  M  +    C P
Sbjct: 157 GYTPDVFSYNALIKGLCVEKKS------------------QEALELLIHMTADGGYNCSP 198

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +V +Y  +I     E  +D    ++ EM    +  DV+ Y +LI GLCK   + +   + 
Sbjct: 199 NVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAIL 258

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           + M + G++ D   Y ++I G    G++ +A  LLK +  SG + D+  Y+ +I   C++
Sbjct: 259 QHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKI 318

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKLKFSVAAD 379
            +  +A  +F+  V+    P+ +  + LL   A  G + +   LL  M  + + F     
Sbjct: 319 GRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFE---- 374

Query: 380 LEKFFEFLV---GKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLF 435
             + F  L+    K   +  A+  F E++  G    V  Y+ ++  L + G V+ A+Y F
Sbjct: 375 -HRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHF 433

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M    L  N +SF+  I      G+  +  E   ++I     P     N +   LCK 
Sbjct: 434 NQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKE 493

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G +  A     D + ++   P    Y   I   C  G+ ++ I+ L+ M   G  P+   
Sbjct: 494 GRVVEAQDFF-DMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWT 552

Query: 556 CSAIISGMCKHGTLEEARKVFTNL 579
            +++++G  K+G +E+A  ++  +
Sbjct: 553 YNSLLNGYFKNGRVEDALALYREM 576



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 157/346 (45%), Gaps = 16/346 (4%)

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL-KDLVDS 302
           LI   C  GR+      F    + G  +       LI+GL    +   A D++ + + + 
Sbjct: 97  LIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMDMVFRRMPEL 156

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD---DLAPDFSTVNPLLVCCAEMGRM 359
           GY  D+  YN++I GLC  K+  +A +L      D   + +P+  + N ++    + G +
Sbjct: 157 GYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEV 216

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYN 416
           D  + L  +M  +   +  D+  +   + G  K + +  A+ + + +  KG       YN
Sbjct: 217 DKAYFLFHEM--MGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYN 274

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           I++     +G++++A+ L  KM G  L+ + +++S+ IQ + + G   EA    + ++  
Sbjct: 275 IMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRK 334

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC---RSGE 533
            Q P+   Y+ L  G    G    A++ VRD L  +      F++    + +C   + G 
Sbjct: 335 GQKPNSTIYHILLHGYATKG----ALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGA 390

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            +K +    EM Q G  P+ V  S +I  +CK G +E+A   F  +
Sbjct: 391 VDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQM 436



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 132/285 (46%), Gaps = 19/285 (6%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E  +  + +     KPDV +Y  +I        +D  ++  + M    +  D   
Sbjct: 493 EGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWT 552

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y +L+ G  K GRV     L+REM    +        +++ GL   G++  A +L   +V
Sbjct: 553 YNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMV 612

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           D G +  +  YN+++GGLC     D+A ++FE     +   D  T + ++    ++GR+D
Sbjct: 613 DRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRID 672

Query: 361 NFFKLLAQM-------EKLKFS--VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS 411
               L + M       + + +S  + + +E   E L+ + + + ++++     K    + 
Sbjct: 673 EAKSLFSAMVLRGPVPDVITYSLMIKSHIE---EGLLEESDNLFLSME-----KNGCAAD 724

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAI 454
             + NI++  LLE G+V++A     K+  +  +LE ++ +  I I
Sbjct: 725 SHMLNIIVRRLLEKGDVRRAGTYLTKIDEKNFSLEASTAALLIPI 769



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 130/292 (44%), Gaps = 10/292 (3%)

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           A  L   +V SG      I   +I   C V + D A+  F + ++        T+N L+ 
Sbjct: 75  AVSLFNTMVRSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIK 134

Query: 352 CCAEMGRMDNFFKLL-AQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGK- 407
              +  R D+   ++  +M +L ++   D+  +   + G   E++   AL++   +    
Sbjct: 135 GLCDGNRTDDAMDMVFRRMPELGYT--PDVFSYNALIKGLCVEKKSQEALELLIHMTADG 192

Query: 408 GYSSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
           GY+  P    YN ++    + GEV KA +LF +M G  L  + ++++  I    ++  + 
Sbjct: 193 GYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMD 252

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALT 524
           +A      + +   +P    YN + +G C +G+++ A+ L++   G+    P    Y+L 
Sbjct: 253 KAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGS-GLQPDVVTYSLL 311

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
           I + C+ G   +   V + M ++G  PN  I   ++ G    G L + R + 
Sbjct: 312 IQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLL 363



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 2/118 (1%)

Query: 475 EMSQVPSVAAYNCLTKGLC--KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           E+   P V +YN L KGLC  K  +    +++     G     P    Y   I    + G
Sbjct: 155 ELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEG 214

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           E +K   + +EM  +G PP+ V  +++I G+CK   +++A  +  ++ ++ ++ +  T
Sbjct: 215 EVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRT 272


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 183/402 (45%), Gaps = 17/402 (4%)

Query: 194 MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
           MR   CKPD+FA+  ++  L  +      L V+ +M K  +  DV+ Y  LI GLCK  +
Sbjct: 154 MRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCK 213

Query: 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
                 LF EM + GIL ++ IY +++ GL    K+  A  L   +  SG   DL  YN 
Sbjct: 214 TQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNV 273

Query: 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
           ++ G C+    D A+ L ++  +D           L+       R +       +M  L+
Sbjct: 274 LLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKM--LR 331

Query: 374 FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKK 430
            ++  D+  +   + G  +E R+  AL +  E+  +G     I YN L+    ++G + +
Sbjct: 332 ENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDE 391

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A  L  ++   +   N+ ++SI I    ++G I +A     ++ ++  +PSV  +N L  
Sbjct: 392 AESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLIN 451

Query: 491 GLCKIGEIDAAMMLV-------RDCLGNVASGPTEFKYALTILHV-----CRSGEAEKII 538
           GLCK   ++ A +L        +  L    S  T+  + +  L V     C SG   K  
Sbjct: 452 GLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAY 511

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           ++L ++   G  P+    + +I+G CK G +  A K+F  ++
Sbjct: 512 KLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQ 553



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 160/379 (42%), Gaps = 16/379 (4%)

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           +I  L  E   +   +V +E+K   ++    A+  LI    + G   +  E F  M++  
Sbjct: 99  IIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRDFD 158

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
              D   + +++  LV +     A  +   ++      D+  Y  +I GLC+  +   A 
Sbjct: 159 CKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDAL 218

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
            LF+      + P+    + +L    +  ++ +  +L ++M         DL  +   L 
Sbjct: 219 VLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMR--ASGCNRDLITYNVLLN 276

Query: 389 G--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
           G  K   +  A  + + L   G+   V  Y  L+  L      ++A   + KM   N++ 
Sbjct: 277 GFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKP 336

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML- 504
           + + ++I I+   + G + EA     ++ E    P    YN L KG C +G +D A  L 
Sbjct: 337 DVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLR 396

Query: 505 ----VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
                 DC       P    Y++ I  +C++G   K   +  EM + GC P+ V  +++I
Sbjct: 397 LEISKHDCF------PNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLI 450

Query: 561 SGMCKHGTLEEARKVFTNL 579
           +G+CK   LEEAR +F  +
Sbjct: 451 NGLCKANRLEEARLLFYQM 469



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 137/308 (44%), Gaps = 10/308 (3%)

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
           R +  ++I  L+ E        +L++L +S  +     ++ +I         +KA + F 
Sbjct: 93  RTVQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFG 152

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-LKFSVAADLEKFFEFLVG-- 389
           +    D  PD    N +L     + R + F   LA   + LK ++  D+  +   + G  
Sbjct: 153 LMRDFDCKPDLFAFNLIL---HFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLC 209

Query: 390 KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           K  +   AL +F+E+  +G   +  IY+I++  L +  ++  A  LF KMR      + +
Sbjct: 210 KTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLI 269

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           ++++ +    +SG + +A      + +   +  V  Y CL  GL +    + A M  +  
Sbjct: 270 TYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKM 329

Query: 509 LG-NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
           L  N+   P    Y + I  + + G   + + +L EMT+ G  P+ +  +A+I G C  G
Sbjct: 330 LRENIK--PDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMG 387

Query: 568 TLEEARKV 575
            L+EA  +
Sbjct: 388 YLDEAESL 395



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 136/317 (42%), Gaps = 47/317 (14%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK------- 230
           M   G I +   I ++M +  C P V  + ++I  L     L+    ++ +M+       
Sbjct: 418 MCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSL 477

Query: 231 -------KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
                   D V  D+ +   ++  LC+ G +++ ++L  ++ ++G+L D   Y +LI G 
Sbjct: 478 FLRLSQGTDKV-FDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGF 536

Query: 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
              G +  A  L K++   G+  D   Y ++I GL R  + + A ++FE  V+    P+ 
Sbjct: 537 CKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPES 596

Query: 344 STVNPLLV-CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
           ST   ++   C E                +  +++  ++   +F   ++E++ +  + F+
Sbjct: 597 STYKTIMTWSCRE--------------NNISLALSVWMKYLRDFRGWEDEKVRVVAESFD 642

Query: 403 --------------ELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
                         ++K K +   P Y I +  L++     +A  +F  ++   + ++S 
Sbjct: 643 NEELQTAIRRLLEMDIKSKNFDLAP-YTIFLIGLVQAKRDCEAFAIFSVLKDFKMNISSA 701

Query: 449 SFSIAIQ--CHVESGDI 463
           S  + I   C VE+ D+
Sbjct: 702 SCVMLIGRLCMVENLDM 718



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 90/177 (50%), Gaps = 5/177 (2%)

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           + ++++G L++    +    +  +++   ++++S +FS+ I+ + E+G   +A E    +
Sbjct: 95  VQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLM 154

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            +    P + A+N +   L +      A+ +    L      P    Y + I  +C++ +
Sbjct: 155 RDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQML-KCNLNPDVVTYGILIHGLCKTCK 213

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR----ERKLLT 586
            +  + + +EMT  G  PN++I S ++SG+C+   + +A+++F+ +R     R L+T
Sbjct: 214 TQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLIT 270



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 118/269 (43%), Gaps = 18/269 (6%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G I +  ++L ++  +   PD+  Y  +I       N++   ++++EM+      D + 
Sbjct: 504 SGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVT 563

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL-LKDL 299
           Y TLI GL + GR     E+F +M + G + + + Y  ++     E  +  A  + +K L
Sbjct: 564 YGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYL 623

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAY-KLFEVTVQD---DLAPDFSTVNPLLVCCAE 355
            D     D  +   ++      ++   A  +L E+ ++    DLAP        L+   +
Sbjct: 624 RDFRGWEDEKV--RVVAESFDNEELQTAIRRLLEMDIKSKNFDLAP----YTIFLIGLVQ 677

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK---EERIMMALDVFEELKGKGYSSV 412
             R    F + + ++  K ++++        L+G+    E + MA+DVF     +G+  +
Sbjct: 678 AKRDCEAFAIFSVLKDFKMNISS---ASCVMLIGRLCMVENLDMAMDVFLFTLERGFRLM 734

Query: 413 -PIYNILMGALLEIGEVKKALYLFGKMRG 440
            PI N L+  LL +     AL+L  +M  
Sbjct: 735 PPICNQLLCNLLHLDRKDDALFLANRMEA 763


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 198/469 (42%), Gaps = 59/469 (12%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGK--QKGYKHNFASYNAL--AYCLSRNNLFRAADQ 173
           T +L+       + P LAS F    GK  + G++ +  ++ +L   +CL           
Sbjct: 109 TCNLLMNCFCQSSQPYLASSFL---GKMMKLGFEPDIVTFTSLINGFCLGN--------- 156

Query: 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
                    R+ E + ++ +M     KPDV  YT +I  L    +++  L ++++M+   
Sbjct: 157 ---------RMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYG 207

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  DV+ Y +L+ GLC  GR      L R M +  I  D   +  LI+  V EGK   A 
Sbjct: 208 IRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAE 267

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           +L  +++      ++  Y S+I G C     D+A ++F +       PD      L+   
Sbjct: 268 ELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGF 327

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSV 412
            +  ++D+  K+  +M +   +             G+  +  +A +VF  +  +G   ++
Sbjct: 328 CKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNI 387

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             YN+L+  L   G+VKKAL +F  M+   ++                            
Sbjct: 388 RTYNVLLHCLCYNGKVKKALMIFEDMQKREMD---------------------------- 419

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
                  P++  YN L  GLC  G+++ A+M+  D +           Y + I  +C++G
Sbjct: 420 ----GVAPNIWTYNVLLHGLCYNGKLEKALMVFED-MRKREMDIGIITYTIIIQGMCKAG 474

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
           + +  + +   +  +G  PN V  + +ISG+ + G   EA  +F  ++E
Sbjct: 475 KVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKE 523



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 96/450 (21%), Positives = 187/450 (41%), Gaps = 40/450 (8%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E L++   M  +   P +  +T ++ V+A  +  D  + + + ++   V  D+     L+
Sbjct: 55  EALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLM 114

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
              C+  +         +M + G   D   +  LI G     ++ +A  ++  +V+ G +
Sbjct: 115 NCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIK 174

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+ +Y +II  LC+    + A  LF+      + PD      L+      GR  +   L
Sbjct: 175 PDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSL 234

Query: 366 LAQMEKLK-----FSVAADLEKFF---EFLVGKE---ERIMMAL---------------- 398
           L  M K K      +  A ++ F    +FL  +E   E I M++                
Sbjct: 235 LRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCM 294

Query: 399 --------DVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
                    +F  ++ KG +  V  Y  L+    +  +V  A+ +F +M    L  N+++
Sbjct: 295 EGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTIT 354

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           ++  IQ   + G    A E  + ++     P++  YN L   LC  G++  A+M+  D  
Sbjct: 355 YTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQ 414

Query: 510 GNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
                G  P  + Y + +  +C +G+ EK + V  +M +       +  + II GMCK G
Sbjct: 415 KREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAG 474

Query: 568 TLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            ++ A  +F +L  + +  + N + Y  ++
Sbjct: 475 KVKNAVNLFCSLPSKGV--KPNVVTYTTMI 502



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 3/155 (1%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK---DLVEADVMAYVTLI 245
           E+   M      P++  Y  ++  L     +   L ++E+M+K   D V  ++  Y  L+
Sbjct: 373 EVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLL 432

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLC  G++ +   +F +M++  + I    Y ++I+G+   GKV  A +L   L   G +
Sbjct: 433 HGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVK 492

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
            ++  Y ++I GL R     +A+ LF    +D ++
Sbjct: 493 PNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527



 Score = 46.2 bits (108), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 70/177 (39%), Gaps = 57/177 (32%)

Query: 132 PTLASKFF-HWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEI 190
           P +A + F H     +G   N  +YN L +CL  N                G++ + L I
Sbjct: 368 PNVAQEVFSHMV--SRGVPPNIRTYNVLLHCLCYN----------------GKVKKALMI 409

Query: 191 LEKMRR---NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK---------------- 231
            E M++   +   P+++ Y  ++  L     L+  L V+E+M+K                
Sbjct: 410 FEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQG 469

Query: 232 -------------------DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
                                V+ +V+ Y T+I GL + G     H LFR+MKE+G+
Sbjct: 470 MCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGV 526


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 110/479 (22%), Positives = 208/479 (43%), Gaps = 27/479 (5%)

Query: 140 HWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV-----PELMD---SQGRIAEMLEIL 191
           H+    K +  + AS++ L  CL    L R   Q      PE  +   S+  + E +E+ 
Sbjct: 195 HYISTYKAFSSDPASFDLLLLCLPSAPLLRRVRQYGISPSPEACNAVLSRLPLDEAIELF 254

Query: 192 EKM-RRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
           + +  +N+C     +Y  +++VL     ++   ++++EM       DV+ Y  LI G C 
Sbjct: 255 QGLPDKNVC-----SYNILLKVLCGAGRVEDARQLFDEMAS---PPDVVTYGILIHGYCA 306

Query: 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310
            G +    +L  +M   G+  +  +Y  ++  L  +G+V  A  +++D+V      D  +
Sbjct: 307 LGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAV 366

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           Y +++ G C       A + F+   +  LA D  T   L+      G +    K+L +M 
Sbjct: 367 YTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEML 426

Query: 371 KLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
             +  V    E  +  LV    K  ++  A  V   +  +G + +V  Y  L   L + G
Sbjct: 427 ARRLDVD---EVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQG 483

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
           +V+ A  L  +M    LE+N+ +++  I    ++G + +A      +      P V  Y 
Sbjct: 484 DVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYT 543

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L   LCK GE+D A  L+++ L N    PT   Y + +   C SG  E   ++L  M +
Sbjct: 544 TLIDALCKSGELDRAHDLLQEMLDN-GIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLE 602

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKT 605
           +   PN    ++++   C    ++   +++  +  R +  E N   Y+ ++  H K ++
Sbjct: 603 KNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNV--EPNENTYNILIKGHCKARS 659



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/413 (21%), Positives = 180/413 (43%), Gaps = 11/413 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ +  ++ ++M      PDV  Y  +I    A   L+  +++ ++M    VE +   Y
Sbjct: 276 GRVEDARQLFDEM---ASPPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVY 332

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +++  LC  GRV     +  +M  + +++D A+Y  ++ G   +G +  A     ++  
Sbjct: 333 TSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQR 392

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   Y ++I GLCR  +  +A K+ +  +   L  D  T   L+    + G+M  
Sbjct: 393 KGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAE 452

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
            F++   M  ++  VA ++  +     G  K+  +  A ++  E+  KG   +   YN L
Sbjct: 453 AFQVHNTM--VQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSL 510

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L + G + +A+     M    L+ +  +++  I    +SG++  A +   ++++   
Sbjct: 511 INGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGI 570

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-GNVASGPTEFKYALTILHVCRSGEAEKI 537
            P++  YN L  G C  G ++    L+   L  N+   P    Y   +   C     +  
Sbjct: 571 KPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIH--PNATTYNSLMKQYCIGNNMKST 628

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            E+   M      PNE   + +I G CK  +++EA+     + E+     A++
Sbjct: 629 TEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASS 681



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 177/410 (43%), Gaps = 4/410 (0%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +   +++L+ M     +P+   YT+++ +L  +  +   L V E+M    V  D   Y
Sbjct: 308 GELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVY 367

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T++ G C  G +V     F EM+  G+  D   Y  LI GL   G++ +A  +L++++ 
Sbjct: 368 TTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLA 427

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                D   Y  ++ G C+  +  +A+++    VQ  +AP+  T   L     + G +  
Sbjct: 428 RRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQA 487

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
             +LL +M      + A         + K   +  A+    ++   G    V  Y  L+ 
Sbjct: 488 ANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLID 547

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
           AL + GE+ +A  L  +M    ++   +++++ +     SG +    +    ++E +  P
Sbjct: 548 ALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHP 607

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRD-CLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           +   YN L K  C    + +   + +  C  NV   P E  Y + I   C++   ++   
Sbjct: 608 NATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVE--PNENTYNILIKGHCKARSMKEAQY 665

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
             NEM ++G        SA+I  + K     EARK+F ++R+     E +
Sbjct: 666 FHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPD 715



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 143/331 (43%), Gaps = 5/331 (1%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G +       ++M+R     D   YT +I  L     L    +V +EM    ++ D +
Sbjct: 376 NKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEV 435

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  L+ G CK G++    ++   M + G+  +   Y  L +GL  +G V  A +LL ++
Sbjct: 436 TYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEM 495

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
            + G   +   YNS+I GLC+    D+A +         L PD  T   L+    + G +
Sbjct: 496 SNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGEL 555

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYN 416
           D    LL +M  L   +   +  +   + G     R+     + E +  K  + +   YN
Sbjct: 556 DRAHDLLQEM--LDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYN 613

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            LM        +K    ++  M   N+E N  +++I I+ H ++  + EA   HN++IE 
Sbjct: 614 SLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEK 673

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
               + ++Y+ L + L K  +   A  L  D
Sbjct: 674 GFRLTASSYSALIRLLNKKKKFVEARKLFHD 704



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 149/330 (45%), Gaps = 26/330 (7%)

Query: 97  RKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVEN---NPTLASKF-FHWAGKQKGYKHNF 152
           R  + +   +V+ E+   RR+  D V   + V+       +A  F  H    Q+G   N 
Sbjct: 411 RAGELKEAEKVLQEMLA-RRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNV 469

Query: 153 ASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRV 212
            +Y AL+  L +    +AA+++   M ++G     LE+      N C      Y ++I  
Sbjct: 470 VTYTALSDGLCKQGDVQAANELLHEMSNKG-----LEL------NAC-----TYNSLING 513

Query: 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           L     LD  +R   +M    ++ DV  Y TLI  LCK G + R H+L +EM +NGI   
Sbjct: 514 LCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPT 573

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              Y VL+ G    G+V     LL+ +++     +   YNS++   C         ++++
Sbjct: 574 IVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYK 633

Query: 333 VTVQDDLAPDFSTVNPLLV--CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK 390
                ++ P+ +T N L+   C A   +   +F    +M +  F + A        L+ K
Sbjct: 634 GMCSRNVEPNENTYNILIKGHCKARSMKEAQYFH--NEMIEKGFRLTASSYSALIRLLNK 691

Query: 391 EERIMMALDVFEELKGKGYSSVP-IYNILM 419
           +++ + A  +F +++ +G+++ P +YN  +
Sbjct: 692 KKKFVEARKLFHDMRKEGFTAEPDVYNFYI 721


>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 576

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/444 (23%), Positives = 194/444 (43%), Gaps = 60/444 (13%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQV----------PELMD---------SQGRI 184
           +Q G   +FA YNA+     R++ F AA++V          P+++          ++G++
Sbjct: 139 EQYGDPDSFA-YNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKL 197

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
              L++++++  + C P V  YT +I       ++D  +R+ +EM    ++ D+  Y  +
Sbjct: 198 DLALKVMDQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMSRGLQPDMYTYNVI 257

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           + G+CK G V R  E    +          +Y +L++GL+ EG+      L+ D++  G 
Sbjct: 258 VRGMCKRGLVDRAFEFVSNLNTTP---SLNLYNLLLKGLLNEGRWEAGERLMSDMIVKGC 314

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             ++  Y+ +I  LCR  +  +A  +  V  +  L PD    +PL+    + G++D    
Sbjct: 315 EPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVD---- 370

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALL 423
                                          +A+   +++   G+   +  YN +MG+L 
Sbjct: 371 -------------------------------LAIGFVDDMISAGWLPDIVNYNTIMGSLC 399

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G   +AL +F K+  +    N+ S++        SGD + A     +++     P   
Sbjct: 400 KKGRADEALNIFKKLEEVGCPPNASSYNTMFGALWSSGDKIRALTMILEMLSNGVDPDRI 459

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
            YN L   LC+ G +D A+ L+ D +      PT   Y + +L +C++      IEVL  
Sbjct: 460 TYNSLISSLCRDGMVDEAIGLLVD-MERTEWQPTVISYNIVLLGLCKAHRIVDAIEVLAV 518

Query: 544 MTQEGCPPNEVICSAIISGMCKHG 567
           M   GC PNE   + ++ G+   G
Sbjct: 519 MVDNGCQPNETTYTLLVEGVGYAG 542



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/421 (22%), Positives = 181/421 (42%), Gaps = 14/421 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+  E L  LE+M +   KPDV   T +I+ L   +  +  +RV E +++   + D  AY
Sbjct: 91  GKYTEALYFLEQMVKRGYKPDVILCTKLIKGLFTSKRTEKAVRVMEILEQ-YGDPDSFAY 149

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             +I G C+  R    + +   MK  G   D   Y +LI  L   GK+  A  ++  L++
Sbjct: 150 NAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKLDLALKVMDQLLE 209

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                 +  Y  +I         D A +L +  +   L PD  T N ++    + G +D 
Sbjct: 210 DNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMSRGLQPDMYTYNVIVRGMCKRGLVDR 269

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGK---EERIMMALDVFEELKGKGYS-SVPIYNI 417
            F+ ++ +         +L        G+    ER+M  + V      KG   ++  Y++
Sbjct: 270 AFEFVSNLNTTPSLNLYNLLLKGLLNEGRWEAGERLMSDMIV------KGCEPNIVTYSV 323

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ +L   G+  +A+ +   M+   L  ++  +   I    + G +  A    + +I   
Sbjct: 324 LISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMISAG 383

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
            +P +  YN +   LCK G  D A+ + +  L  V   P    Y      +  SG+  + 
Sbjct: 384 WLPDIVNYNTIMGSLCKKGRADEALNIFKK-LEEVGCPPNASSYNTMFGALWSSGDKIRA 442

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           + ++ EM   G  P+ +  +++IS +C+ G ++EA  +  ++   +   +   I Y+ +L
Sbjct: 443 LTMILEMLSNGVDPDRITYNSLISSLCRDGMVDEAIGLLVDMERTEW--QPTVISYNIVL 500

Query: 598 I 598
           +
Sbjct: 501 L 501



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 145/329 (44%), Gaps = 43/329 (13%)

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
           L   GK  +A   L+ +V  GY+ D+ +   +I GL   K+ +KA ++ E+  Q    PD
Sbjct: 87  LCKTGKYTEALYFLEQMVKRGYKPDVILCTKLIKGLFTSKRTEKAVRVMEILEQYG-DPD 145

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
                                          F+  A +  F      + +R   A  V  
Sbjct: 146 ------------------------------SFAYNAVISGFC-----RSDRFDAANRVIL 170

Query: 403 ELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
            +K +G+S  V  YNIL+G+L   G++  AL +  ++   N     ++++I I+  +  G
Sbjct: 171 RMKYRGFSPDVVTYNILIGSLCARGKLDLALKVMDQLLEDNCNPTVITYTILIEATIIHG 230

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
            I +A    ++++     P +  YN + +G+CK G +D A   V     N+ + P+   Y
Sbjct: 231 SIDDAMRLLDEMMSRGLQPDMYTYNVIVRGMCKRGLVDRAFEFV----SNLNTTPSLNLY 286

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            L +  +   G  E    ++++M  +GC PN V  S +IS +C+ G   EA  V   ++E
Sbjct: 287 NLLLKGLLNEGRWEAGERLMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKE 346

Query: 582 RKLLTEANTIVYDEILIEHMKKKTADLVL 610
           + L  +A    YD ++    K+   DL +
Sbjct: 347 KGLNPDA--YCYDPLISAFCKEGKVDLAI 373



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/415 (20%), Positives = 163/415 (39%), Gaps = 87/415 (20%)

Query: 144 KQKGYKHNFASYNALAYCL-SRNNLFRAADQVPELMDS------------------QGRI 184
           K +G+  +  +YN L   L +R  L  A   + +L++                    G I
Sbjct: 173 KYRGFSPDVVTYNILIGSLCARGKLDLALKVMDQLLEDNCNPTVITYTILIEATIIHGSI 232

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV------------------- 225
            + + +L++M     +PD++ Y  ++R +     +D                        
Sbjct: 233 DDAMRLLDEMMSRGLQPDMYTYNVIVRGMCKRGLVDRAFEFVSNLNTTPSLNLYNLLLKG 292

Query: 226 ------WE---EMKKDLV----EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
                 WE    +  D++    E +++ Y  LI  LC+ G+     ++ R MKE G+  D
Sbjct: 293 LLNEGRWEAGERLMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPD 352

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              Y  LI     EGKV  A   + D++ +G+  D+  YN+I+G LC+  + D+A  +F+
Sbjct: 353 AYCYDPLISAFCKEGKVDLAIGFVDDMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFK 412

Query: 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392
              +    P+ S+ N +            F  L +  +K++                   
Sbjct: 413 KLEEVGCPPNASSYNTM------------FGALWSSGDKIR------------------- 441

Query: 393 RIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451
               AL +  E+   G     I YN L+ +L   G V +A+ L   M     +   +S++
Sbjct: 442 ----ALTMILEMLSNGVDPDRITYNSLISSLCRDGMVDEAIGLLVDMERTEWQPTVISYN 497

Query: 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           I +    ++  I++A E    +++    P+   Y  L +G+   G    A+ L +
Sbjct: 498 IVLLGLCKAHRIVDAIEVLAVMVDNGCQPNETTYTLLVEGVGYAGWRSYAVELAK 552



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 7/138 (5%)

Query: 163 SRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
           S N +F A      L  S  +I  +  ILE M  N   PD   Y ++I  L  +  +D  
Sbjct: 425 SYNTMFGA------LWSSGDKIRALTMILE-MLSNGVDPDRITYNSLISSLCRDGMVDEA 477

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
           + +  +M++   +  V++Y  +++GLCK  R+V   E+   M +NG   +   Y +L+EG
Sbjct: 478 IGLLVDMERTEWQPTVISYNIVLLGLCKAHRIVDAIEVLAVMVDNGCQPNETTYTLLVEG 537

Query: 283 LVGEGKVGKACDLLKDLV 300
           +   G    A +L K LV
Sbjct: 538 VGYAGWRSYAVELAKSLV 555


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 188/407 (46%), Gaps = 27/407 (6%)

Query: 121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV------ 174
           +++++ K +N   + S F H   +  G  H+  SYN +  CL R + F  A  V      
Sbjct: 75  VLSKIAKSKNYDLVISLFHHM--EVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMK 132

Query: 175 ----PELMD--------SQG-RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221
               P+++          QG R+ + ++++ KM     +PDV  Y  +I        ++ 
Sbjct: 133 FGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVND 192

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
            + +++ M++D V AD + Y +L+ GLC  GR      L R+M    I+ +   +  +I+
Sbjct: 193 AVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVID 252

Query: 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341
             V EGK  +A  L +++       D+  YNS+I GLC   + D+A ++ ++ V     P
Sbjct: 253 VFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLP 312

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALD 399
           D  T N L+    +  R+D   KL  +M +    +  D   +   + G  +  R   A +
Sbjct: 313 DVVTYNTLINGFCKSKRVDEGTKLFREMAQR--GLVGDTITYNTIIQGYFQAGRPDAAQE 370

Query: 400 VFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           +F  +  +   ++  Y+IL+  L     V+KAL LF  M+   +E++  +++I I    +
Sbjct: 371 IFSRMDSR--PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCK 428

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
            G++ +A +    +      P V +Y  +  G C+  + D + +L R
Sbjct: 429 IGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYR 475



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 175/390 (44%), Gaps = 15/390 (3%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           D+++Y  +I  L         L V  +M K   E DV+   +LI G C+G RV    +L 
Sbjct: 103 DLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLV 162

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            +M+E G   D  IY  +I+G    G V  A +L   +   G RAD   YNS++ GLC  
Sbjct: 163 SKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCS 222

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            ++  A +L    V  D+ P+  T   ++    + G+     KL  +M +    V  D+ 
Sbjct: 223 GRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRR--CVDPDVF 280

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM 438
            +   + G     R+  A  + + +  KG    V  YN L+    +   V +   LF +M
Sbjct: 281 TYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREM 340

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
               L  ++++++  IQ + ++G    A E  ++   M   P++  Y+ L  GLC    +
Sbjct: 341 AQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSR---MDSRPNIRTYSILLYGLCMNWRV 397

Query: 499 DAAMMLVRDCLGNVASGPTEF---KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           + A++L      N+     E     Y + I  +C+ G  E   ++   ++ +G  P+ V 
Sbjct: 398 EKALVLFE----NMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVS 453

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLL 585
            + +ISG C+    +++  ++  ++E  LL
Sbjct: 454 YTTMISGFCRKRQWDKSDLLYRKMQEDGLL 483



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 99/438 (22%), Positives = 197/438 (44%), Gaps = 25/438 (5%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S   + E +++  KM ++   P +  ++ ++  +A  +N D  + ++  M+   +  D+ 
Sbjct: 46  SSMNLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLY 105

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y  +I  LC+  R V    +  +M + G   D      LI G     +V  A DL+  +
Sbjct: 106 SYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKM 165

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMG 357
            + G+R D+ IYN+II G C++   + A +LF+   +D +  D  T N L+  +CC+  G
Sbjct: 166 EEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCS--G 223

Query: 358 RMDNFFKLLAQM-------EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS 410
           R  +  +L+  M         + F+   D+     F+  KE +   A+ ++EE+  +   
Sbjct: 224 RWSDAARLMRDMVMRDIVPNVITFTAVIDV-----FV--KEGKFSEAMKLYEEMTRRCVD 276

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
             V  YN L+  L   G V +A  +   M       + ++++  I    +S  + E  + 
Sbjct: 277 PDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKL 336

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
             ++ +   V     YN + +G  + G  DAA    ++    + S P    Y++ +  +C
Sbjct: 337 FREMAQRGLVGDTITYNTIIQGYFQAGRPDAA----QEIFSRMDSRPNIRTYSILLYGLC 392

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
            +   EK + +   M +     +    + +I GMCK G +E+A  +F +L  + L  + +
Sbjct: 393 MNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGL--KPD 450

Query: 590 TIVYDEILIEHMKKKTAD 607
            + Y  ++    +K+  D
Sbjct: 451 VVSYTTMISGFCRKRQWD 468



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 32/193 (16%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GR+ E  ++L+ M    C PDV  Y  +I      + +D   +++ EM +  +  D + 
Sbjct: 292 HGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTIT 351

Query: 241 YVTLIMG--------------------------------LCKGGRVVRGHELFREMKENG 268
           Y T+I G                                LC   RV +   LF  M+++ 
Sbjct: 352 YNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSE 411

Query: 269 ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
           I +D   Y ++I G+   G V  A DL + L   G + D+  Y ++I G CR +Q+DK+ 
Sbjct: 412 IELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSD 471

Query: 329 KLFEVTVQDDLAP 341
            L+    +D L P
Sbjct: 472 LLYRKMQEDGLLP 484


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 168/361 (46%), Gaps = 41/361 (11%)

Query: 227 EEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
           + ++K  V ADV+ Y T+I  LCKG  V   + L+ EM   GI  +   + +L++ L  +
Sbjct: 136 QMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKD 195

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
            K  +A +LL  ++  G + ++  Y +I+ G C V Q +KA  +F V VQ+ + P+    
Sbjct: 196 RKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCY 255

Query: 347 NPLL--VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL 404
           N ++  +C                                     K++R+  A+++F+E+
Sbjct: 256 NIIINGLC-------------------------------------KKKRVDEAMNLFKEM 278

Query: 405 KGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463
             K  +  V  YNIL+  L ++G++  +L L  +MR +   V+ ++++  +    ++  +
Sbjct: 279 HWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHL 338

Query: 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523
            +A     +I +    P+V  Y  L  GLCK G ++ A ++ ++ L       T + Y +
Sbjct: 339 DQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTE-GYHITVWTYNV 397

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I  +C+ G  ++ + +L+ M    C P+ V    II  + + G   +  K+   +  R 
Sbjct: 398 MINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKGETVKTNKLLCAMIVRG 457

Query: 584 L 584
           L
Sbjct: 458 L 458



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 99/444 (22%), Positives = 198/444 (44%), Gaps = 14/444 (3%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           + +  ++  N  KP +   T ++        +     +  ++ K   E + + + TLI G
Sbjct: 30  ISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSILTKILKMGYEPNSITFTTLIKG 89

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           +C  G+          +  +G  +D+  Y +L+ GL   G+   A  +L+    +   AD
Sbjct: 90  MCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMGETRAAMQMLRK---TWVNAD 146

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           + +Y++II  LC+ K    AY+L+   +   + P+  T + L+    +  +      LLA
Sbjct: 147 VVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLA 206

Query: 368 QMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
            M  +K  V  ++  +   + G     ++  AL++F  +  +G   +V  YNI++  L +
Sbjct: 207 MM--MKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCK 264

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
              V +A+ LF +M    +  + ++++I I    + G I  + E  +++  + +   +  
Sbjct: 265 KKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIIT 324

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN L   LCK   +D A+ LV++ + +    P    Y   I  +C+ G  E    +  E+
Sbjct: 325 YNSLLHALCKNHHLDQAITLVKE-IKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEI 383

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIVYDEILIEHM 601
             EG        + +I+G+CK G  +EA  + + + +   + +A    TI+Y   L E  
Sbjct: 384 LTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIY--ALSEKG 441

Query: 602 KKKTADLVLSGLKFFGLESKLKAK 625
           +    + +L  +   GL  +LK K
Sbjct: 442 ETVKTNKLLCAMIVRGLSKRLKKK 465



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 90/396 (22%), Positives = 165/396 (41%), Gaps = 51/396 (12%)

Query: 172 DQVPE--LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
           DQV    LM+   ++ E    ++ +R+     DV  Y+ +I  L   + +    R++ EM
Sbjct: 114 DQVSYAILMNGLCKMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEM 173

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
               +  +V  +  L+  LCK  +  +   L   M + G+  +   YG +++G     +V
Sbjct: 174 IAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQV 233

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
            KA ++   +V  G   ++  YN II GLC+ K+ D+A  LF+      + PD  T N L
Sbjct: 234 NKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNIL 293

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY 409
           +    ++G++    +L+ +M                  +GK   I+              
Sbjct: 294 IDGLCKLGKISTSLELVDEMRS----------------IGKTVDIIT------------- 324

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
                YN L+ AL +   + +A+ L  +++   ++ N  +++  I    + G + +A   
Sbjct: 325 -----YNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVI 379

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
             +I+      +V  YN +  GLCK G  D A+ L+     N A  P    Y   I  + 
Sbjct: 380 FQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDN-ACIPDAVSYETIIYALS 438

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
             GE  K               N+++C+ I+ G+ K
Sbjct: 439 EKGETVK--------------TNKLLCAMIVRGLSK 460



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 20/228 (8%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           +KG K N  +Y A+   YCL                    ++ + L I   M +   +P+
Sbjct: 210 KKGVKPNVVTYGAIMDGYCLVN------------------QVNKALNIFNVMVQEGVEPN 251

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V+ Y  +I  L  ++ +D  + +++EM    +  DV+ Y  LI GLCK G++    EL  
Sbjct: 252 VWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVD 311

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EM+  G  +D   Y  L+  L     + +A  L+K++ D G + ++  Y ++I GLC+  
Sbjct: 312 EMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDG 371

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370
           + + AY +F+  + +       T N ++    + G  D    LL++ME
Sbjct: 372 RLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRME 419



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/426 (20%), Positives = 186/426 (43%), Gaps = 34/426 (7%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P +  +  ++  L    +    + ++ +++ + ++  ++    L+   C  G +     +
Sbjct: 8   PPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSI 67

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             ++ + G   +   +  LI+G+   G+  +A      +V  G++ D   Y  ++ GLC+
Sbjct: 68  LTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCK 127

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-------EKLK 373
           + +   A ++   T  +     +ST+   L C  +   + + ++L ++M           
Sbjct: 128 MGETRAAMQMLRKTWVNADVVMYSTIIDSL-CKGKF--VTDAYRLYSEMIAKGIFPNVYT 184

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
           FS+  D        + K+ +   A+++   +  KG   +V  Y  +M     + +V KAL
Sbjct: 185 FSILVD-------ALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKAL 237

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
            +F  M    +E N   ++I I    +   + EA     ++      P V  YN L  GL
Sbjct: 238 NIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGL 297

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           CK+G+I  ++ LV D + ++        Y   +  +C++   ++ I ++ E+  +G  PN
Sbjct: 298 CKLGKISTSLELV-DEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPN 356

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSG 612
               + +I G+CK G LE+A  +F     +++LTE            H+   T +++++G
Sbjct: 357 VCTYTTLIDGLCKDGRLEDAYVIF-----QEILTEG----------YHITVWTYNVMING 401

Query: 613 LKFFGL 618
           L   GL
Sbjct: 402 LCKKGL 407


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 166/357 (46%), Gaps = 9/357 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA---DV 238
           G++ +  + +E M+     P+V  Y  ++       +     +    MK+ L      + 
Sbjct: 214 GKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNE 273

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + + TLI G CK   V    + F EM++ G+  +   Y  LI GL   GK+ +A DL   
Sbjct: 274 VTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDK 333

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           +V  G + ++  YN++I G C+ K   +A K+F+   + +L P+  T N ++    + G 
Sbjct: 334 MVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGM 393

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIY 415
           M+  F L + M  L   +  ++  +   + G  +++ +  A ++  E++ KG    V  Y
Sbjct: 394 MEEGFSLCSSM--LDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTY 451

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           NIL+  L +  + + A  L  +M  L L+ N ++++  +  +   G +  A     ++ +
Sbjct: 452 NILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEK 511

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
             + P+V  YN L KG CKI +++AA  L+ + L      P    Y +  L +   G
Sbjct: 512 ERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEK-GLNPNRTTYDIVRLEMLEKG 567



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 175/394 (44%), Gaps = 44/394 (11%)

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           ++  L  E  +     V++EM K  +  ++  +   I GLC+ G++ +  +   +MK  G
Sbjct: 171 LLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWG 230

Query: 269 ILIDRAIYGVLIEGLVGEGKVG---KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           I  +   Y  L++G    G  G   KA   +K+++ +    +   +N++I G C+ +   
Sbjct: 231 ISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVA 290

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
            A K FE   +  L P+  T N L+      G+++                         
Sbjct: 291 AAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEE------------------------ 326

Query: 386 FLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                      A+D+++++ G G   ++  YN L+    +   +K+A  +F  +    L 
Sbjct: 327 -----------AIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELV 375

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            N ++F+  I  + + G + E     + +++   +P+V+ YNCL  GLC+  ++ AA  L
Sbjct: 376 PNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKEL 435

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
           + +       G     Y + I  +C++ ++    ++LNEM   G  PN V  + ++ G C
Sbjct: 436 LNEMENKGLKGDV-VTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYC 494

Query: 565 KHGTLEEARKVFTNL-RERKLLTEANTIVYDEIL 597
             G L+ A  V T + +ERK   + N + Y+ ++
Sbjct: 495 MEGKLKAALNVRTRMEKERK---QPNVVTYNVLI 525



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 111/243 (45%), Gaps = 17/243 (6%)

Query: 129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEML 188
           + N   A K F    KQ G K N  +YN+L   L  N                G++ E +
Sbjct: 286 DENVAAAKKAFEEMQKQ-GLKPNIVTYNSLINGLCNN----------------GKLEEAI 328

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           ++ +KM     KP++  Y A+I     ++ +    +V++++ K  +  +V+ + T+I   
Sbjct: 329 DLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAY 388

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           CK G +  G  L   M + GIL + + Y  LI GL  +  +  A +LL ++ + G + D+
Sbjct: 389 CKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDV 448

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             YN +I GLC+  +   A KL        L P+  T N L+      G++     +  +
Sbjct: 449 VTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTR 508

Query: 369 MEK 371
           MEK
Sbjct: 509 MEK 511



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 93/218 (42%), Gaps = 19/218 (8%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-------------------GRIAEM 187
           G K N  +YNAL     +  + + A +V + +  Q                   G + E 
Sbjct: 338 GLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEG 397

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
             +   M      P+V  Y  +I  L  +++L A   +  EM+   ++ DV+ Y  LI G
Sbjct: 398 FSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDG 457

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK  +     +L  EM   G+  +   Y  L++G   EGK+  A ++   +     + +
Sbjct: 458 LCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPN 517

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           +  YN +I G C++ + + A  L    ++  L P+ +T
Sbjct: 518 VVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTT 555


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 195/427 (45%), Gaps = 35/427 (8%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+ + +  +I +L    +L+    ++++M     E +   +  L+ G C+ G   +G EL
Sbjct: 145 PEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLEL 204

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             +M+  GIL +  +Y  LI     EGK   A  L+  + + G    +  +NS I  LC 
Sbjct: 205 LGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCG 264

Query: 321 VKQFDKAYKLF-EVTVQDDLA---PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
             +  +A ++F ++ + ++L    P+  T   +L+   + G ++    L+  M++    +
Sbjct: 265 SGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFI 324

Query: 377 AADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALY 433
             +LE +  +L+G  +  +++ A  V +E+ G G    +  YNI+M  L + G +  A  
Sbjct: 325 --NLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARM 382

Query: 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493
           L G M    +  +++++S  +  +   G + EA    +++I  +  P+    N L   L 
Sbjct: 383 LMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLW 442

Query: 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG----- 548
           K G I  A  L++  +     G       + I  +C +G+ +K IE++N M   G     
Sbjct: 443 KEGRISEAENLLQK-MNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALG 501

Query: 549 ------------------CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
                             C P+ V  S IISG+CK G L++A+K F  +  + L  + ++
Sbjct: 502 NLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGL--QPDS 559

Query: 591 IVYDEIL 597
            +YD  +
Sbjct: 560 AIYDTFI 566



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 175/409 (42%), Gaps = 22/409 (5%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD----LVEA 236
           +G+  +  ++++KMR +   P V  + + I  L     +    R++ +M+ D    L   
Sbjct: 230 EGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDEELGLPHP 289

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           +V+ Y  ++MG CK G +     L   MK N   I+   Y + + GL+  GK+ +A  +L
Sbjct: 290 NVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVL 349

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
           K+++  G   D+  YN ++ GLC+      A  L  + +++ + PD  T + LL      
Sbjct: 350 KEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSK 409

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIY- 415
           G++     LL +M     S            + KE RI  A ++ +++  KGY    +  
Sbjct: 410 GKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTC 469

Query: 416 NILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           NI++ AL   G++ KA+ +   M   G     N  +  I +       D +   +C    
Sbjct: 470 NIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGL-----VDDTISGKKC---- 520

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
                 P +  Y+ +  GLCK G +D A     + +      P    Y   I   CR G+
Sbjct: 521 -----TPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSK-GLQPDSAIYDTFIHSFCREGK 574

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
                +VL +M + GC       +++I G+     + E   +   +RE+
Sbjct: 575 ISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREK 623



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 101/456 (22%), Positives = 186/456 (40%), Gaps = 42/456 (9%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210
           N  SYN     L RN                G++ E   +L++M     +PD+++Y  ++
Sbjct: 325 NLESYNIWLLGLIRN----------------GKLLEAWIVLKEMLGIGIEPDIYSYNIVM 368

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
             L     L     +   M ++ +  D + Y TL+ G C  G+V   + L  EM  N   
Sbjct: 369 DGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCS 428

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
            +     VL+  L  EG++ +A +LL+ + + GY  D    N II  LC   Q DKA ++
Sbjct: 429 PNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEI 488

Query: 331 ------------------FEVTVQDDLA-----PDFSTVNPLLVCCAEMGRMDNFFKLLA 367
                             F   V D ++     PD  T + ++    + GR+D+  K   
Sbjct: 489 VNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFI 548

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
           +M        + +   F     +E +I  A  V ++++ +G + ++  YN L+  L    
Sbjct: 549 EMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKN 608

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
           ++ +   L  +MR   +  +  +++  + C  E G I +A    +++++    P+++++ 
Sbjct: 609 QIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFR 668

Query: 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546
            L K  CK  +  A+  +    L NV  G  E  Y L    +   G+  +  E+      
Sbjct: 669 ILIKAFCKACDFKASHEVFEIAL-NVC-GHKEALYTLMFNELLVGGKVAEAKELFETALD 726

Query: 547 EGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
                   +   +I  +CK   LE A  V   L ++
Sbjct: 727 RSFDIGNFLYKDLIDRLCKDEKLEAASDVLHRLIDK 762



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 143/346 (41%), Gaps = 27/346 (7%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRV----WEE-------- 228
           +GRI+E   +L+KM       D      +I  L     LD  + +    W          
Sbjct: 444 EGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNL 503

Query: 229 ------MKKDLVEA-----DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
                 +  D +       D++ Y T+I GLCK GR+    + F EM   G+  D AIY 
Sbjct: 504 GNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYD 563

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
             I     EGK+  A  +LKD+   G    L  YNS+I GL    Q  + Y L +   + 
Sbjct: 564 TFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREK 623

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIM 395
            ++PD  T N +L C  E GR+++   +L +M  L+  ++ ++  F   +    K     
Sbjct: 624 GVSPDVCTYNHMLNCLCEGGRINDAPSVLDEM--LQKGISPNISSFRILIKAFCKACDFK 681

Query: 396 MALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
            + +VFE           +Y ++   LL  G+V +A  LF      + ++ +  +   I 
Sbjct: 682 ASHEVFEIALNVCGHKEALYTLMFNELLVGGKVAEAKELFETALDRSFDIGNFLYKDLID 741

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
              +   +  A +  +++I+       A++  +  G  K+G    A
Sbjct: 742 RLCKDEKLEAASDVLHRLIDKGYQFDPASFMPVIDGFGKMGNKHVA 787



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 110/268 (41%), Gaps = 28/268 (10%)

Query: 115 RRVTPDLV------AEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLF 168
           ++ TPDLV      + + K         KF       KG + + A Y+   +   R    
Sbjct: 518 KKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMM--SKGLQPDSAIYDTFIHSFCREGKI 575

Query: 169 RAADQVPELMDSQG-------------------RIAEMLEILEKMRRNLCKPDVFAYTAM 209
            +A QV + M+ +G                   +I E+  ++++MR     PDV  Y  M
Sbjct: 576 SSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHM 635

Query: 210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
           +  L     ++    V +EM +  +  ++ ++  LI   CK       HE+F E+  N  
Sbjct: 636 LNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILIKAFCKACDFKASHEVF-EIALNVC 694

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
               A+Y ++   L+  GKV +A +L +  +D  +     +Y  +I  LC+ ++ + A  
Sbjct: 695 GHKEALYTLMFNELLVGGKVAEAKELFETALDRSFDIGNFLYKDLIDRLCKDEKLEAASD 754

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           +    +      D ++  P++    +MG
Sbjct: 755 VLHRLIDKGYQFDPASFMPVIDGFGKMG 782


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 195/420 (46%), Gaps = 9/420 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++     +L  + +   + DV   T +++ L  +  +   + +  E        D + Y
Sbjct: 119 GQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCY 178

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            T+I GLCK G+     ++F +MK+  +  +  +Y  +I+GL  +G V +AC L  ++V+
Sbjct: 179 GTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVE 238

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLF-EVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +G   D+  YNS+I G C V +F  A KL  E+ V+  + PD  T N L+    ++GR+ 
Sbjct: 239 NGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVS 298

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEEL-KGKGYSSVPIYNI 417
             + ++A M  +K     D+  +   + G      +  A  VF+++ +     +V  Y  
Sbjct: 299 EAYNVVAVM--IKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCT 356

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+    ++  V +A+ L  +M   NL  ++++++  +    +SG  L   +    +    
Sbjct: 357 LINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASG 416

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
           Q   +  YN L     K  + D A+ L +  +  +   P    Y + +  +C+SG  +  
Sbjct: 417 QPADLITYNVLLDDYFKHEKFDKALALFQHII-EIGISPNIRTYNILLDGLCKSGRLKYA 475

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            E+   ++ +GC PN    + +I G+CK G L+EA  +   +     L   N I +D I+
Sbjct: 476 KEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYL--PNYITFDTIV 533



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 164/382 (42%), Gaps = 34/382 (8%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           KP +  ++ +I   A    +     +   + K   + DV    TL+ GLC  GRV+    
Sbjct: 102 KPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVLEAVS 161

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L  E  + G   D   YG +I GL   GK   A  +   +       +L +YN++I GLC
Sbjct: 162 LLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLC 221

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +    D+A  L    V++ +  D  + N ++     +GR     KLL +M          
Sbjct: 222 KQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEM---------- 271

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
                                   ++GK Y  V  +NIL+  L ++G V +A  +   M 
Sbjct: 272 -----------------------VVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMI 308

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
               + + +S++  +  +  SG + EA +  +K++E + +P+V +Y  L  G CK+  +D
Sbjct: 309 KRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVD 368

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            AM+L+ + + N    P    Y   +  + +SG +    +++  M   G P + +  + +
Sbjct: 369 EAMVLLTE-MHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVL 427

Query: 560 ISGMCKHGTLEEARKVFTNLRE 581
           +    KH   ++A  +F ++ E
Sbjct: 428 LDDYFKHEKFDKALALFQHIIE 449



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 145/299 (48%), Gaps = 4/299 (1%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEV-TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
           +N ++  L ++K+++    L+ +   +  + P   T + L+   A++G+M   F LL  +
Sbjct: 72  FNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNI 131

Query: 370 EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEV 428
            K+ F +   +       +  + R++ A+ +  E   +G+    + Y  ++  L +IG+ 
Sbjct: 132 LKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKT 191

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
           + A+ +F KM+ + +  N + ++  I    + G + EAC    +++E      V +YN +
Sbjct: 192 RDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSM 251

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
             G C +G   AA+ L+ + +      P  + + + I  +C+ G   +   V+  M + G
Sbjct: 252 IHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRG 311

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
             P+ V  +A+++G C  G++ EA++VF  + ER  L   N I Y  ++  + K +  D
Sbjct: 312 WKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTAL--PNVISYCTLINGYCKVRMVD 368



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 122/276 (44%), Gaps = 24/276 (8%)

Query: 100 QFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLA--SKFFHWAGK--QKGYKHNFASY 155
           +FQ   +++ E+    +V PD+    + ++    L   S+ ++      ++G+K +  SY
Sbjct: 260 RFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSY 319

Query: 156 NAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           NAL   YCLS                  G + E  ++ +KM      P+V +Y  +I   
Sbjct: 320 NALMNGYCLS------------------GSVGEAKQVFDKMVERTALPNVISYCTLINGY 361

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
              R +D  + +  EM    +  D + Y  L+ GL K GR +   +L   M+ +G   D 
Sbjct: 362 CKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADL 421

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             Y VL++      K  KA  L + +++ G   ++  YN ++ GLC+  +   A ++F++
Sbjct: 422 ITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQL 481

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
                  P+  T N ++    + G +D    LL +M
Sbjct: 482 LSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKM 517



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 66/138 (47%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +   GR     +++E MR +    D+  Y  ++         D  L +++ + +  +  +
Sbjct: 396 LSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPN 455

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           +  Y  L+ GLCK GR+    E+F+ +   G   +   Y ++I GL  EG + +A  LL 
Sbjct: 456 IRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLY 515

Query: 298 DLVDSGYRADLGIYNSII 315
            +V++ Y  +   +++I+
Sbjct: 516 KMVNNNYLPNYITFDTIV 533


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 194/416 (46%), Gaps = 15/416 (3%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR  E LEI E+M +N  + D+F Y+++I  L    N+D  +RV++E+ +  +  D + +
Sbjct: 271 GRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTH 330

Query: 242 VTLIMGLCKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             ++ G C+ G++    EL+  M KEN   +    Y +LI+GL   GKV +A  + + L 
Sbjct: 331 NAMLNGFCRAGKIKESFELWMVMGKENCQTV--VSYNILIKGLFENGKVEEAISIWELLC 388

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G R +   Y  +I GLC+  + +KA K+F+         D    + ++    + GRMD
Sbjct: 389 KKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMD 448

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
               ++ QM+K  + +   +         +  ++  A++ F E++ KG S ++  YN L+
Sbjct: 449 EAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLI 508

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L +     +A     +M     + + ++ S+ +    +   I  A     + ++    
Sbjct: 509 KGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFK 568

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLV-----RDCLGNVASGPTEFKYALTILHVCRSGEA 534
           P +  YN L  GLC + +++ A+ L        C+ N+ +  T     +  L+  R  + 
Sbjct: 569 PDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNT----LMEGLYKVR--DY 622

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           EK  E+ + + ++G  P+ +  +  I G+C    + +A +   +   R +L  A T
Sbjct: 623 EKASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDALNRGILPTAVT 678



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 184/394 (46%), Gaps = 22/394 (5%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P++  Y  +I++   ++ ++  + + + M    ++ DV +Y TLI G+ K G ++   ++
Sbjct: 149 PNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKV 208

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV-DSGYRADLGIYNSIIGGLC 319
           F EM   G++ D   Y +LI+G    G   K  ++ + LV D     ++  YN +I GLC
Sbjct: 209 FDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLC 268

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +  +FD++ +++E   +++   D  T + L+    E G +D   ++  ++  ++ S+  D
Sbjct: 269 KCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEI--VESSLVVD 326

Query: 380 LEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGK 437
                  L G  +  +I  + +++  +  +   +V  YNIL+  L E G+V++A+ ++  
Sbjct: 327 AVTHNAMLNGFCRAGKIKESFELWMVMGKENCQTVVSYNILIKGLFENGKVEEAISIWEL 386

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           +        S ++ + I    ++G + +A +   +  +        AY+ +  GLCK G 
Sbjct: 387 LCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGR 446

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVC--------RSGEAEKIIEVLNEMTQEGC 549
           +D A+ +V            +  Y L   HVC        R+ + E  I    EM  +GC
Sbjct: 447 MDEAISIVNQ--------MDKRGYKLDP-HVCNPLINGFVRASKLEDAINFFREMECKGC 497

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            P  V  + +I G+CK     EA      + E++
Sbjct: 498 SPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKE 531



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 163/347 (46%), Gaps = 7/347 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G+I E  E+   M +  C+  V +Y  +I+ L     ++  + +WE + K     +   Y
Sbjct: 341 GKIKESFELWMVMGKENCQT-VVSYNILIKGLFENGKVEEAISIWELLCKKGCRPESTTY 399

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GLCK GR+ +  ++F+E ++    +D   Y  +++GL  EG++ +A  ++  +  
Sbjct: 400 GVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDK 459

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            GY+ D  + N +I G  R  + + A   F        +P   + N L+    +  R   
Sbjct: 460 RGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSE 519

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
            +  + +M  L+     D+      + G  +E++I MAL+++++   KG+   + +YNIL
Sbjct: 520 AYSFVKEM--LEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDITMYNIL 577

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           M  L  + +++ AL L+  M+      N ++ +  ++   +  D  +A E  + I++   
Sbjct: 578 MHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGL 637

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
            P + +YN   KGLC    I  A+  + D L N    PT   + + +
Sbjct: 638 HPDIISYNITIKGLCSCSRISDAIEFLNDAL-NRGILPTAVTWNILV 683



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 102/225 (45%), Gaps = 19/225 (8%)

Query: 145 QKGYKHNFASYNALAYCLSRNN-------LFRAADQVPELMDS------------QGRIA 185
           +KG +    +Y  L + L +N        +F+ A+  P  +D+            +GR+ 
Sbjct: 389 KKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMD 448

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E + I+ +M +   K D      +I        L+  +  + EM+       +++Y TLI
Sbjct: 449 EAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLI 508

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLCK  R    +   +EM E     D     +L++GL  E K+  A +L +  +D G++
Sbjct: 509 KGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFK 568

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            D+ +YN ++ GLC V + + A +L+    +    P+  T N L+
Sbjct: 569 PDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLM 613



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 8/184 (4%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           ++  YNIL+    +  +++KA+ L   M   NL+ +  S+   I   V+ GD+L A +  
Sbjct: 150 NLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVF 209

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM----MLVRDCLGNVASGPTEFKYALTIL 526
           +++     V  V  YN L  G  K G+ D        LV+DC    +  P    Y + I 
Sbjct: 210 DEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDC----SVYPNVVTYNIMIN 265

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
            +C+ G  ++ +E+   MT+     +    S++I G+C+ G ++ A +V+  + E  L+ 
Sbjct: 266 GLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVV 325

Query: 587 EANT 590
           +A T
Sbjct: 326 DAVT 329



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 26/183 (14%)

Query: 102 QWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           +W P ++T           L+ + L  E    +A   +  A   KG+K +   YN L + 
Sbjct: 531 EWKPDMIT---------CSLLMDGLCQEKKIEMALNLWQQA-LDKGFKPDITMYNILMHG 580

Query: 162 LSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221
           L                 S  ++ + L++   M+R+ C P++     ++  L   R+ + 
Sbjct: 581 LC----------------SVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEK 624

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281
              +W+ + KD +  D+++Y   I GLC   R+    E   +    GIL     + +L+ 
Sbjct: 625 ASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDALNRGILPTAVTWNILVR 684

Query: 282 GLV 284
             V
Sbjct: 685 AAV 687


>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 521

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 121/500 (24%), Positives = 207/500 (41%), Gaps = 107/500 (21%)

Query: 113 KLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAAD 172
           K + ++ +    ++K E +P  A + F+  G+QKG+ HN A+Y+ L + L++   F A D
Sbjct: 53  KCKFISHESAINLIKREKDPQHALEIFNMVGEQKGFNHNHATYSTLIHKLAQTKKFHAVD 112

Query: 173 QVPELMDSQG----------------------RIAEMLEILEKMRRNLCKPDVFAYTAMI 210
            +   M  +                       R+ EM   ++ + R   KP + A +  +
Sbjct: 113 ALLHQMTYETCKFHENIFLNLMKHFYKSSLHERVLEMFYAIQPIVRE--KPSLKAISTCL 170

Query: 211 RVLAAERNLD------------------------------------ACLRVWEEMKKDLV 234
            +L   + +D                                    + L V  EMKK   
Sbjct: 171 NILVESKQIDLAQKCLLYVNEHLKVRPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRR 230

Query: 235 E-ADVMAYVTLIMGLCKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKA 292
              +V+ Y TLI GLC  GR+    ELF EM  ++ IL D   Y VLI+G    GK  +A
Sbjct: 231 SYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRA 290

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
             +++ +  +G   ++  Y+ ++ G C+  + ++A ++F+      L PD      L+ C
Sbjct: 291 RKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINC 350

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-Y 409
              +GR+D   +LL +M ++K    AD   F   L G  +E R   AL + E L  +G Y
Sbjct: 351 FCGVGRIDEAMELLKEMTEMK--CKADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVY 408

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEAC 467
            +   Y I++  L + GE++K+  L G M  RG                           
Sbjct: 409 LNKGSYRIVLNFLCQKGELEKSCALLGLMLSRGF-------------------------- 442

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
                      VP  A  N L   LC+ G +D A+  +   L  +   P    +A  I +
Sbjct: 443 -----------VPHYATSNELLVCLCEAGMVDNAVTALFG-LTQMGFTPEPKSWAHLIEY 490

Query: 528 VCRSGEAEKIIEVLNEMTQE 547
           +CR  +   + E+++E+ ++
Sbjct: 491 ICRERKLLFVFELVDELVEK 510



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 143/311 (45%), Gaps = 21/311 (6%)

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE-VTVQDDLAPDFSTVNPLLVCCAEMG 357
           LV++G +     + S I  + R K    A ++F  V  Q     + +T + L+   A+  
Sbjct: 47  LVETGRKCKFISHESAINLIKREKDPQHALEIFNMVGEQKGFNHNHATYSTLIHKLAQTK 106

Query: 358 RMDNFFKLLAQM--EKLKF--SVAADLEKFFEFLVGKEERIMMALDVFEELKG--KGYSS 411
           +      LL QM  E  KF  ++  +L K F +     ER+   L++F  ++   +   S
Sbjct: 107 KFHAVDALLHQMTYETCKFHENIFLNLMKHF-YKSSLHERV---LEMFYAIQPIVREKPS 162

Query: 412 VPIYNILMGALLEIGEVKKA----LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
           +   +  +  L+E  ++  A    LY+      L +  N+  F+I ++ H +SGD+  A 
Sbjct: 163 LKAISTCLNILVESKQIDLAQKCLLYV---NEHLKVRPNTCIFNILVKHHCKSGDLESAL 219

Query: 468 EC-HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
           E  H         P+V  Y+ L  GLC  G +  A+ L  + +      P    Y++ I 
Sbjct: 220 EVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIK 279

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
             C  G+A++  +++  M   GC PN    S +++G CK G LEEA++VF  ++   L  
Sbjct: 280 GFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGL-- 337

Query: 587 EANTIVYDEIL 597
           + +T+ Y  ++
Sbjct: 338 KPDTVGYTTLI 348



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 12/190 (6%)

Query: 397 ALDVFEELKG--KGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN-LEVNSLSFSIA 453
           AL+V  E+K   + Y +V  Y+ L+  L   G +K+A+ LF +M   + +  ++L++S+ 
Sbjct: 218 ALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVL 277

Query: 454 IQCHVESGDILEACECHNKIIEMSQV----PSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
           I+     G    A     KI+E  +     P+V  Y+ L  G CK G ++ A   V D +
Sbjct: 278 IKGFCHGGKADRA----RKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKE-VFDEM 332

Query: 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569
            +    P    Y   I   C  G  ++ +E+L EMT+  C  + V  + ++ G+C+ G  
Sbjct: 333 KSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGRF 392

Query: 570 EEARKVFTNL 579
           +EA ++  NL
Sbjct: 393 DEALRMLENL 402



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 3/180 (1%)

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEV-NSLSFSIAIQCHVESGDILEACECHNK 472
           I+NIL+    + G+++ AL +  +M+       N +++S  I     +G + EA E   +
Sbjct: 201 IFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEE 260

Query: 473 IIEMSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           ++   Q+ P    Y+ L KG C  G+ D A  ++     N    P  F Y++ +   C+ 
Sbjct: 261 MVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSN-GCDPNVFNYSVLMNGFCKE 319

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
           G  E+  EV +EM   G  P+ V  + +I+  C  G ++EA ++   + E K   +A T 
Sbjct: 320 GRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADAVTF 379


>gi|334182978|ref|NP_001185123.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332193283|gb|AEE31404.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 811

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 183/399 (45%), Gaps = 19/399 (4%)

Query: 195 RRNLCK---PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           +R LC+   P+V  YT +I+ L  +  +     ++ ++ K  +E  ++ Y +LI G CK 
Sbjct: 380 KRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKC 439

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           G +  G  L+ +M + G   D  IYGVL++GL  +G +  A      ++    R ++ ++
Sbjct: 440 GNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVF 499

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF-------- 363
           NS+I G CR+ +FD+A K+F +     + PD +T   ++     +  M++ F        
Sbjct: 500 NSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVM----RVSIMEDAFCKHMKPTI 555

Query: 364 --KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL-KGKGYSSVPIYNILMG 420
             +L   M++ K S    +      L+ K  RI  A   F  L +GK    +  YN ++ 
Sbjct: 556 GLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMIC 615

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
               +  + +A  +F  ++      N+++ +I I    ++ D+  A    + + E    P
Sbjct: 616 GYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKP 675

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
           +   Y CL     K  +I+ +  L  + +      P+   Y++ I  +C+ G  ++   +
Sbjct: 676 NAVTYGCLMDWFSKSVDIEGSFKLFEE-MQEKGISPSIVSYSIIIDGLCKRGRVDEATNI 734

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            ++       P+ V  + +I G CK G L EA  ++ ++
Sbjct: 735 FHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHM 773



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/452 (21%), Positives = 190/452 (42%), Gaps = 58/452 (12%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P+V  +  +I        +D    +++ M++  +E D++AY TLI G  K G +  GH+L
Sbjct: 284 PNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKL 343

Query: 261 FREMKENGILIDRAI-----------------------------------YGVLIEGLVG 285
           F +    G+ +D  +                                   Y +LI+GL  
Sbjct: 344 FSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQ 403

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           +G++ +A  +   ++  G    +  Y+S+I G C+       + L+E  ++    PD   
Sbjct: 404 DGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVI 463

Query: 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEE 403
              L+   ++ G M +  +   +M  L  S+  ++  F   + G  +  R   AL VF  
Sbjct: 464 YGVLVDGLSKQGLMLHAMRFSVKM--LGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRL 521

Query: 404 LKGKG-------YSSVPIYNILMGALLEIGEVKKALYLFGKMR----GLNLEVNSLSFSI 452
           +   G       +++V   +I+  A  +  +    L LF  M+      ++ V ++   +
Sbjct: 522 MGIYGIKPDVATFTTVMRVSIMEDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHL 581

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
             +CH     I +A +  N +IE    P +  YN +  G C +  +D A  +  + L   
Sbjct: 582 LFKCH----RIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIF-ELLKVT 636

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
             GP      + I  +C++ + +  I + + M ++G  PN V    ++    K   +E +
Sbjct: 637 PFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGS 696

Query: 573 RKVFTNLRERKLLTEANTIVYDEILIEHMKKK 604
            K+F  ++E+ +   + +IV   I+I+ + K+
Sbjct: 697 FKLFEEMQEKGI---SPSIVSYSIIIDGLCKR 725



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 115/526 (21%), Positives = 226/526 (42%), Gaps = 85/526 (16%)

Query: 88  IARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWA---GK 144
           +A  I+ A ++  F      V   S L+R   +LV  +L +E+ P  A K+F WA   GK
Sbjct: 42  LAAGISKAIKEGNFNLLDSSVYG-SNLQRNETNLV--LLSLESEPNSALKYFRWAEISGK 98

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQV-PELMDSQGRIAEMLEILE--KMRRNLCK- 200
                    S+  +A+ L RN +F  AD+V  E++ ++G+   +L  +    +  ++CK 
Sbjct: 99  D-------PSFYTIAHVLIRNGMFDVADKVFDEMITNRGKDFNVLGSIRDRSLDADVCKF 151

Query: 201 --------------PDVFAYTA-------------MIRVLAAERNLDACLRVWEEMKKDL 233
                          ++F Y+              M+  L     +D     ++++ +  
Sbjct: 152 LMECCCRYGMVDKALEIFVYSTQLGVVIPQDSVYRMLNSLIGSDRVDLIADHFDKLCRGG 211

Query: 234 VE-ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
           +E + V A+  ++  L   G V +  +  R + E G  +       +++GL  + ++  A
Sbjct: 212 IEPSGVSAHGFVLDALFCKGEVTKALDFHRLVMERGFRVGIVSCNKVLKGLSVD-QIEVA 270

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
             LL  ++D G   ++  + ++I G C+  + D+A+ LF+V  Q  + PD    + L+  
Sbjct: 271 SRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLI-- 328

Query: 353 CAEMGRMDNFFK--LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS 410
                  D +FK  +L    KL FS A              + + + + VF        S
Sbjct: 329 -------DGYFKAGMLGMGHKL-FSQAL------------HKGVKLDVVVFS-------S 361

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           ++ +Y       ++ G++  A  ++ +M    +  N ++++I I+   + G I EA   +
Sbjct: 362 TIDVY-------VKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMY 414

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
            +I++    PS+  Y+ L  G CK G + +   L  D +  +   P    Y + +  + +
Sbjct: 415 GQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMI-KMGYPPDVVIYGVLVDGLSK 473

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
            G     +    +M  +    N V+ +++I G C+    +EA KVF
Sbjct: 474 QGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVF 519



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 21/210 (10%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
           ASKFF+   + K  + +  +YN +   YC  R             +D   RI E+L++  
Sbjct: 591 ASKFFNNLIEGK-MEPDIVTYNTMICGYCSLRR------------LDEAERIFELLKVTP 637

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
                   P+    T +I VL    ++D  +R++  M +   + + + Y  L+    K  
Sbjct: 638 ------FGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSV 691

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
            +    +LF EM+E GI      Y ++I+GL   G+V +A ++    +D+    D+  Y 
Sbjct: 692 DIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYA 751

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
            +I G C+V +  +A  L+E  +++ + PD
Sbjct: 752 ILIRGYCKVGRLVEAALLYEHMLRNGVKPD 781



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 75/177 (42%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           RI +  +    +     +PD+  Y  MI    + R LD   R++E +K      + +   
Sbjct: 587 RIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLT 646

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI  LCK   +     +F  M E G   +   YG L++       +  +  L +++ + 
Sbjct: 647 ILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEK 706

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           G    +  Y+ II GLC+  + D+A  +F   +   L PD      L+    ++GR+
Sbjct: 707 GISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRL 763



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 21/163 (12%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE 176
           VT  ++  VL   N+   A + F     +KG K N  +Y  L    S++           
Sbjct: 643 VTLTILIHVLCKNNDMDGAIRMFSIMA-EKGSKPNAVTYGCLMDWFSKS----------- 690

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
            +D +G      ++ E+M+     P + +Y+ +I  L     +D    ++ +     +  
Sbjct: 691 -VDIEGS----FKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLP 745

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGI----LIDRAI 275
           DV+AY  LI G CK GR+V    L+  M  NG+    L+ RA+
Sbjct: 746 DVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKPDDLLQRAL 788



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/181 (17%), Positives = 76/181 (41%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L++ + M+RN    D+     +I +L     ++   + +  + +  +E D++ Y T+I G
Sbjct: 557 LQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICG 616

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
            C   R+     +F  +K      +     +LI  L     +  A  +   + + G + +
Sbjct: 617 YCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPN 676

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
              Y  ++    +    + ++KLFE   +  ++P   + + ++    + GR+D    +  
Sbjct: 677 AVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFH 736

Query: 368 Q 368
           Q
Sbjct: 737 Q 737


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 176/402 (43%), Gaps = 9/402 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G     + +  ++      P +   T +I     + +L     +   + K   + +++ +
Sbjct: 69  GHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTF 128

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G C  G V +      ++   G  +D   YG LI GL   G+   A  LL+ + +
Sbjct: 129 NTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEE 188

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              R +L  Y+++I GLC+ +    A +LF +     +  D    N L+  C  +G+   
Sbjct: 189 DLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWRE 248

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYNI 417
             +LL  M  ++ ++  D +  F  LV    KE RI+ A  VF  +  +G    +  YN 
Sbjct: 249 ATRLLTMM--VRGNINPD-DYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNA 305

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           LM        V +A  LF +M    LE + L++++ I  + +   + EA     +I   +
Sbjct: 306 LMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKN 365

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
            VP++A YN L  GLCK+G +     LV D + +    P    Y + +   C+S   EK 
Sbjct: 366 LVPNLATYNSLIDGLCKLGRMSCVQELV-DEMCDRGQSPDIVTYNIFLDAFCKSKPYEKA 424

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           I +  ++ Q G  P+  +   I+   CK   L+ A +   +L
Sbjct: 425 ISLFRQIVQ-GIWPDFYMYDVIVENFCKGEKLKIAEEALQHL 465



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 97/456 (21%), Positives = 193/456 (42%), Gaps = 64/456 (14%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           KGY  +  SY +L   L +N                G+  + L++L+KM  +L +P++  
Sbjct: 154 KGYPLDEFSYGSLINGLCKN----------------GQTRDALQLLQKMEEDLVRPNLIT 197

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y+ +I  L  +R +   LR++  +    +  DV+AY +LI G C  G+      L   M 
Sbjct: 198 YSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMV 257

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
              I  D   + +L++ L  EG++ +A  +   ++  G + D+  YN+++ G C      
Sbjct: 258 RGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVS 317

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFE 385
           +A +LF   V+  L PD    N L+    ++  +D                         
Sbjct: 318 EARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDE------------------------ 353

Query: 386 FLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                      A+ +F+E++ K    ++  YN L+  L ++G +     L  +M      
Sbjct: 354 -----------AMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQS 402

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC-----KIGEID 499
            + ++++I +    +S    +A     +I++    P    Y+ + +  C     KI E  
Sbjct: 403 PDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ-GIWPDFYMYDVIVENFCKGEKLKIAEEA 461

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
              +L+  C  NV +      Y + I  +C+    ++ + +L++M    CPP+ V    I
Sbjct: 462 LQHLLIHGCCPNVRT------YTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETI 515

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           I  + +    ++A K+   + ER L+ +   +V+++
Sbjct: 516 IGALQERNETDKAEKLRLEMIERGLVNDEARLVHEQ 551



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 90/184 (48%), Gaps = 3/184 (1%)

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
           +++ L+GA++ +G    A+ LF ++    +  +  + +I I C+     +  A      I
Sbjct: 57  VFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTI 116

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           ++M   P++  +N L  G C  G +  AM    D +        EF Y   I  +C++G+
Sbjct: 117 LKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAK-GYPLDEFSYGSLINGLCKNGQ 175

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
               +++L +M ++   PN +  S +I G+CK   + +A ++F+ +  R +L +   + Y
Sbjct: 176 TRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDV--VAY 233

Query: 594 DEIL 597
           + ++
Sbjct: 234 NSLI 237


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 182/448 (40%), Gaps = 47/448 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA-DVMA 240
           GR A++      +     +PD FA+   ++   A  +L   + +   M +D     +  +
Sbjct: 139 GRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFS 198

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G+ + GR     E+F EM E  +L +   Y  +I+G +  G +     L   +V
Sbjct: 199 YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMV 258

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + +   YN ++ GLCR  +  +   L +      + PD  T + L    +  G   
Sbjct: 259 CHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSK 318

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYNI 417
               L  +  K   ++           + K+ ++ +A +V + L   G   VP   IYN 
Sbjct: 319 AMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGL--VPTRVIYNT 376

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+    + GE++ A   FG+M+  +++                                 
Sbjct: 377 LINGYCQTGELEGAFSTFGQMKSRHIK--------------------------------- 403

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P    YN L  GLCK   I  A  L+ +   N    PT   +   I    R+G+ EK 
Sbjct: 404 --PDHITYNALINGLCKAERITNAQDLLMEMQDN-GVNPTVETFNTLIDAYGRTGQLEKC 460

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             VL+EM + G  PN V   +I++  CK+G + EA  +  ++  + +L  A   VY+ I+
Sbjct: 461 FIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQ--VYNAII 518

Query: 598 ---IEHMKKKTADLVLSGLKFFGLESKL 622
              +EH     A +++  +K  G+   +
Sbjct: 519 DAYVEHGPNDQAFILVEKMKSNGISPSI 546



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 100/455 (21%), Positives = 181/455 (39%), Gaps = 87/455 (19%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           NA +Y +    ++RA           GR  + +E+ ++M      P+   Y  MI     
Sbjct: 195 NAFSYNVVIAGMWRA-----------GRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIK 243

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK---------- 265
             +L+A   + ++M    ++ + + Y  L+ GLC+ GR+     L  EM           
Sbjct: 244 GGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFT 303

Query: 266 -------------------------ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
                                    +NG+ I      +L+ GL  +GKV  A ++L+ LV
Sbjct: 304 YSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLV 363

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGR 358
           ++G      IYN++I G C+  + + A+  F       + PD  T N L+  +C      
Sbjct: 364 NAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLC------ 417

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNI 417
                                          K ERI  A D+  E++  G + +V  +N 
Sbjct: 418 -------------------------------KAERITNAQDLLMEMQDNGVNPTVETFNT 446

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ A    G+++K   +  +M+   L+ N +S+   +    ++G I EA    + +    
Sbjct: 447 LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKD 506

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
            +P+   YN +     + G  D A +LV     N  S P+   Y L I  +C   +  + 
Sbjct: 507 VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGIS-PSIVTYNLLIKGLCNQSQISEA 565

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
            E++N ++     P+ V  + +IS  C  G +++A
Sbjct: 566 EEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKA 600



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 102/434 (23%), Positives = 183/434 (42%), Gaps = 25/434 (5%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G K N  +YN L   L R                 GR+ E   +L++M      PD F Y
Sbjct: 261 GLKPNAITYNVLLSGLCR----------------AGRMGETSALLDEMASQKMVPDGFTY 304

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           + +   L+   +  A L ++ +  K+ V         L+ GLCK G+V    E+ + +  
Sbjct: 305 SILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVN 364

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G++  R IY  LI G    G++  A      +     + D   YN++I GLC+ ++   
Sbjct: 365 AGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITN 424

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK--LKFSVAADLEKFF 384
           A  L      + + P   T N L+      G+++  F +L++M++  LK +V +      
Sbjct: 425 AQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVN 484

Query: 385 EFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
            F   K  +I  A+ + +++  K    +  +YN ++ A +E G   +A  L  KM+   +
Sbjct: 485 AFC--KNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGI 542

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             + +++++ I+       I EA E  N +     +P   +YN L    C  G ID A+ 
Sbjct: 543 SPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALD 602

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           L +  +       T   Y   I  +  +G   ++  +  +M Q    P+  I + ++   
Sbjct: 603 L-QQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAY 661

Query: 564 CKHGT---LEEARK 574
            K+G     E+ RK
Sbjct: 662 SKYGNEIKAEDLRK 675



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +Q +I+E  EI+  +  +   PD  +Y  +I       N+D  L + + M K  +++ V 
Sbjct: 558 NQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVR 617

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI GL   GR++    L+++M +N ++   AI+ +++E     G   KA DL K++
Sbjct: 618 TYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 677

Query: 300 V 300
           +
Sbjct: 678 L 678


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 102/452 (22%), Positives = 190/452 (42%), Gaps = 54/452 (11%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMD------------------SQGRIAEML 188
           GY  +  +YNA+   LS  +L  A   +  ++                   ++G+  E L
Sbjct: 115 GYAPSLLAYNAVLLALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEAL 174

Query: 189 EIL-EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            ++ + MR   C P+V  Y  ++        +DA  R+   M++  V   ++ + T++ G
Sbjct: 175 GVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNG 234

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK GR+    ++F EM   G+  D   Y  L+ G    G + +A  +  ++   G   D
Sbjct: 235 LCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPD 294

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  + S+I  +CR    ++A  L     +  L  +  T   L+      G +D+    + 
Sbjct: 295 VVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMK 354

Query: 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE 427
           +M                    +E RI                SV  YN+L+    ++G 
Sbjct: 355 EM--------------------RECRIQ--------------PSVVCYNVLINGYCKLGR 380

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487
           + +A  L  +M    ++ + +++S  +  + + GD   A E + K+++   VP    Y+ 
Sbjct: 381 MDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSS 440

Query: 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547
           L +GLC+   +  A  L    L  +   P EF Y   I   C+ G  +K + + +EM ++
Sbjct: 441 LIRGLCEERRLGDACELFEKML-QLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKK 499

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           G  P+ V  S +I G+ K    +EA+++   L
Sbjct: 500 GVLPDVVTYSVLIDGLSKSARTKEAQRLLFKL 531



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 175/424 (41%), Gaps = 55/424 (12%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS-------------------QGRI 184
           +  G   N  +YN L     R     AA+++  +M                      GR+
Sbjct: 182 RGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRM 241

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            +  ++ ++M R    PD  +Y  ++        L   L V+ EM +  V  DV+ + +L
Sbjct: 242 EDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSL 301

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  +C+ G + R   L  +M+E G+ ++   +  LI+G    G +  A   +K++ +   
Sbjct: 302 IHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRI 361

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
           +  +  YN +I G C++ + D+A +L        + PD  T + +L    ++G  D+ F+
Sbjct: 362 QPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFE 421

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE 424
           L  +M  LK  V  D                                   Y+ L+  L E
Sbjct: 422 LNRKM--LKKGVVPD--------------------------------AITYSSLIRGLCE 447

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
              +  A  LF KM  L L+ +  +++  I  H + G++ +A   H+++I+   +P V  
Sbjct: 448 ERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVT 507

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           Y+ L  GL K      A  L+   L      P   KY   ++H CR+ E + ++ +L   
Sbjct: 508 YSVLIDGLSKSARTKEAQRLLFK-LYYEDPVPDNIKYE-ALMHCCRTAEFKSVVALLKGF 565

Query: 545 TQEG 548
           + +G
Sbjct: 566 SMKG 569



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 173/409 (42%), Gaps = 52/409 (12%)

Query: 145 QKGYKHNFASYNALAYCLSR-NNLFRAADQVPELMDSQGRIAEM---------------- 187
           QKG   +  ++ +L + + R  NL RA   V ++ +   R+ E                 
Sbjct: 288 QKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLD 347

Query: 188 --LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
             L  +++MR    +P V  Y  +I        +D    +  EM+   ++ DV+ Y T++
Sbjct: 348 DALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTIL 407

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            G CK G      EL R+M + G++ D   Y  LI GL  E ++G AC+L + ++  G +
Sbjct: 408 SGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQ 467

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D   Y ++I G C+     KA  L +  ++  + PD  T + L+   ++  R     +L
Sbjct: 468 PDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRL 527

Query: 366 LAQM-------EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL 418
           L ++       + +K+       +  EF      + ++AL        KG+S   + N  
Sbjct: 528 LFKLYYEDPVPDNIKYEALMHCCRTAEF------KSVVALL-------KGFSMKGLMN-- 572

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
                      +A  ++  M   + +++   +S+ I  H   G+I++A   H +++    
Sbjct: 573 -----------QADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGF 621

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
            P+  +   L +GL + G    A  ++++ L   +    E   AL  L+
Sbjct: 622 SPNSTSTISLVRGLFEEGMTVEADNVIQELLNCCSLADAETSKALIDLN 670


>gi|270342070|gb|ACZ74655.1| hypothetical protein [Phaseolus vulgaris]
 gi|270342076|gb|ACZ74661.1| hypothetical protein [Phaseolus vulgaris]
          Length = 485

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 178/389 (45%), Gaps = 2/389 (0%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           I +  E+  +M R   + + + +  M  VL+ + + D      E+M+++  E D++ Y T
Sbjct: 90  ITQCWEVYAEMGRLGVQRNAYTFNIMTHVLSKDGDTDKVTGFLEKMEEEGFEPDLVTYNT 149

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+   CK  R+     L++ M   G++ +   Y  L+ GL  EGKV +A  L   +V  G
Sbjct: 150 LVNSYCKKRRLEDAFYLYKIMYVRGVMPNLITYTTLMNGLCEEGKVKEAHQLFHQMVHRG 209

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
              D+  YN+++ G CR  +      +    + + + PD  T   ++   A  G++ +  
Sbjct: 210 IAPDIVSYNTLVCGYCRHGEMQMCRSILYEMIGNRICPDSITCRVIVDGYARDGKLLSAL 269

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGAL 422
             + ++++ +  +  ++  +    + KE +   A      +   GY+  +  YN L+ +L
Sbjct: 270 NTVEELKRFRMKIPEEVYDYLVVALCKEGKPFAARSFLHRISEDGYTPKMNTYNKLVESL 329

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            E    ++AL L   M   +++VN+ ++   I C       +EA     +II    +P V
Sbjct: 330 CEFNNEEEALILKSDMENKSMKVNAAAYRAVIICLCRVKRTVEAEVLLEEIIGSDMLPDV 389

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
                L KG C+  ++D A+ L++          TE  Y   +   C  G   +++EV +
Sbjct: 390 EISRALIKGYCEENKVDKAVSLLKLFAKEFQVYDTE-SYNAVVKVFCDVGNVTELMEVED 448

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEE 571
           ++ + G  PN++ C  +I G+ K   L++
Sbjct: 449 KLLKVGYVPNKLTCRHVIHGLQKAMELDD 477



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 98/260 (37%), Gaps = 26/260 (10%)

Query: 114 LRRVTPDLVAEV-----LKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNN 166
           +R V P+L+        L  E     A + FH     +G   +  SYN L   YC     
Sbjct: 172 VRGVMPNLITYTTLMNGLCEEGKVKEAHQLFHQM-VHRGIAPDIVSYNTLVCGYC----- 225

Query: 167 LFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVW 226
                          G +     IL +M  N   PD      ++   A +  L + L   
Sbjct: 226 -------------RHGEMQMCRSILYEMIGNRICPDSITCRVIVDGYARDGKLLSALNTV 272

Query: 227 EEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
           EE+K+  ++     Y  L++ LCK G+          + E+G       Y  L+E L   
Sbjct: 273 EELKRFRMKIPEEVYDYLVVALCKEGKPFAARSFLHRISEDGYTPKMNTYNKLVESLCEF 332

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
               +A  L  D+ +   + +   Y ++I  LCRVK+  +A  L E  +  D+ PD    
Sbjct: 333 NNEEEALILKSDMENKSMKVNAAAYRAVIICLCRVKRTVEAEVLLEEIIGSDMLPDVEIS 392

Query: 347 NPLLVCCAEMGRMDNFFKLL 366
             L+    E  ++D    LL
Sbjct: 393 RALIKGYCEENKVDKAVSLL 412



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/316 (18%), Positives = 123/316 (38%), Gaps = 39/316 (12%)

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
           L+   I  V +EG+      G   +L++   D  +     I++ ++    +V   +KA +
Sbjct: 3   LLAELIQMVEVEGVCASSNEGIYENLVRCTEDCNWNP--VIFDMLVKAYVKVGMVEKALE 60

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG 389
            F   ++  L P+    N LL   +    +   +++ A+M +L     A        ++ 
Sbjct: 61  TFRRNIETRLIPNVIACNCLLSGLSRFNYITQCWEVYAEMGRLGVQRNAYTFNIMTHVLS 120

Query: 390 KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           K+          E+++ +G+   +  YN L+ +  +   ++ A YL+  M    +  N +
Sbjct: 121 KDGDTDKVTGFLEKMEEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKIMYVRGVMPNLI 180

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           +++  +    E G + EA +  ++++     P + +YN L  G C+ GE           
Sbjct: 181 TYTTLMNGLCEEGKVKEAHQLFHQMVHRGIAPDIVSYNTLVCGYCRHGE----------- 229

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
                            + +CRS        +L EM      P+ + C  I+ G  + G 
Sbjct: 230 -----------------MQMCRS--------ILYEMIGNRICPDSITCRVIVDGYARDGK 264

Query: 569 LEEARKVFTNLRERKL 584
           L  A      L+  ++
Sbjct: 265 LLSALNTVEELKRFRM 280



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 74/152 (48%), Gaps = 3/152 (1%)

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N + F + ++ +V+ G + +A E   + IE   +P+V A NCL  GL +   I     + 
Sbjct: 38  NPVIFDMLVKAYVKVGMVEKALETFRRNIETRLIPNVIACNCLLSGLSRFNYITQCWEVY 97

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
            + +G +      + + +    + + G+ +K+   L +M +EG  P+ V  + +++  CK
Sbjct: 98  AE-MGRLGVQRNAYTFNIMTHVLSKDGDTDKVTGFLEKMEEEGFEPDLVTYNTLVNSYCK 156

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
              LE+A  ++  +  R ++   N I Y  ++
Sbjct: 157 KRRLEDAFYLYKIMYVRGVM--PNLITYTTLM 186


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 118/460 (25%), Positives = 187/460 (40%), Gaps = 55/460 (11%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           NAL+YC     L R            G+I +    + +M R    PDVF Y  +I  L  
Sbjct: 34  NALSYCYLVKALCRT-----------GKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCK 82

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
            R +   +  +E M     E DV+ Y TL+ GLCK GRV +   LF  M+  GI      
Sbjct: 83  ARRISRAIEFFETMP----EPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVT 138

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           Y  LI+      +   A  LL+ +        +  Y SII GLC+ ++ D+AY+LFE   
Sbjct: 139 YTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMK 198

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEER 393
                PD  T N L+       R+     LL  M +  F    D   F   + G    +R
Sbjct: 199 LAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQ--PDKITFTALIEGLCTTDR 256

Query: 394 IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL------------------ 434
           I  A  +F+ +  +G +  +  + +L+  L  + +++ AL +                  
Sbjct: 257 IKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYPACPEAVILYTPIF 316

Query: 435 --FGKMRGLNLEV-------------NSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
              G+ RG +                N ++++   +   +  + + A     +++E    
Sbjct: 317 RELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIE 376

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P + AYN L  G CK   +D A  +VR  +      P    Y   + H CR G+ E I E
Sbjct: 377 PDMVAYNVLVDGFCKADRLDMAEKMVRY-MDQSGLPPNIVTYNTLVGHHCRKGKVEAIGE 435

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           +L+ M   G  P+    S +++G+   G  + A   F NL
Sbjct: 436 LLHTMVSRGRQPDVATWSTLVAGLFMVGQADAAYS-FLNL 474



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/378 (20%), Positives = 158/378 (41%), Gaps = 17/378 (4%)

Query: 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
           A++ +L   R  +  + V+  +     + + ++Y  L+  LC+ G++ +      EM   
Sbjct: 5   ALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMARE 64

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
            ++ D   Y V+I+ L    ++ +A +  + + +     D+  YN+++GGLC+  +  +A
Sbjct: 65  KLVPDVFTYNVVIDTLCKARRISRAIEFFETMPEP----DVVTYNTLLGGLCKNGRVAQA 120

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
             LF       + P   T   L+    +M + +  + LL  M   K S    +  +   +
Sbjct: 121 CSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCS--PTVYSYCSII 178

Query: 388 VG--KEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLE 444
            G  K  ++  A  +FEE+K  G     + YN L+  L     + +A  L   M     +
Sbjct: 179 NGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQ 238

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            + ++F+  I+    +  I EA      + +    P +  +  L   LC + ++  A+ +
Sbjct: 239 PDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSV 298

Query: 505 VRDCLGNVASGPTE-FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           VR    N  + P     Y      + R    ++   +L +M + G PPN V  +A   G+
Sbjct: 299 VR----NYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGL 354

Query: 564 CKHGTLEEARKVFTNLRE 581
              G  +E  + +   R 
Sbjct: 355 ---GDWKEGMRAYREFRR 369



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 82/213 (38%), Gaps = 13/213 (6%)

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+  L      ++ + +F ++   + + N+LS+   ++    +G I +AC    ++  
Sbjct: 4   NALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAR 63

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
              VP V  YN +   LCK   I  A+             P    Y   +  +C++G   
Sbjct: 64  EKLVPDVFTYNVVIDTLCKARRISRAIEFF-----ETMPEPDVVTYNTLLGGLCKNGRVA 118

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           +   +   M   G  P++V  + +I   CK    E A  +   +  RK         Y  
Sbjct: 119 QACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRK--CSPTVYSYCS 176

Query: 596 ILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
           I+    K +  D      + + L  ++K  GCK
Sbjct: 177 IINGLCKNRKVD------QAYQLFEEMKLAGCK 203


>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 476

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 115/473 (24%), Positives = 212/473 (44%), Gaps = 69/473 (14%)

Query: 116 RVTPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           RV+P +V  VLK  EN   LA +FF WAGKQ+ Y H+  +Y+ +   L++   ++     
Sbjct: 40  RVSPIVVENVLKRFENAGMLAYQFFEWAGKQRNYTHSIRAYHTMIESLAKIRQYQI---- 95

Query: 175 PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
                       M +++ KM R+L   +V  +  ++R  A  + +   +  +  M+K  V
Sbjct: 96  ------------MWDLVNKM-RSLKILNVETFCIIMRKYARSQKVKEAVYTFNIMEKYDV 142

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
             ++ A+ +L+  LCK   VV+  E+F  MK+  I  D   Y +L+EG      + KA +
Sbjct: 143 PPNLAAFNSLLSALCKSKNVVKAQEIFNGMKDQFIP-DSKTYSILLEGWGKAPNLPKARE 201

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           + +++VD G   D+  Y  ++  LC+                                  
Sbjct: 202 IFREMVDMGCDPDIVTYGIMVDILCKA--------------------------------- 228

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV---GKEERIMMALDVFEEL-KGKGYS 410
             GR+D    ++ +M+    SV       +  LV   G E RI  A+  F ++ + +  +
Sbjct: 229 --GRVDEAVGIVKEMDS---SVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEA 283

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            V +YN L+GA  ++ ++K A  +  +M    +  NS + +I +   +  GD  EA    
Sbjct: 284 DVAVYNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVF 343

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
            ++I++   P    Y  + K  C+  +++ A+  V   +      P+   +++ I  +C+
Sbjct: 344 RRMIKVCD-PDADTYTMMIKMFCENDKLEMALK-VWKYMRLKQFVPSMHTFSVLINGLCK 401

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK-VFTNLRER 582
            G A K   +L EM ++G  P     S++  G  K   ++E R+ V   L+E+
Sbjct: 402 KGNASKACILLEEMIEKGIRP-----SSVTFGKLKQLLIKEGREDVLEFLQEK 449



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 93/199 (46%), Gaps = 4/199 (2%)

Query: 399 DVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV 458
           D+  +++     +V  + I+M       +VK+A+Y F  M   ++  N  +F+  +    
Sbjct: 98  DLVNKMRSLKILNVETFCIIMRKYARSQKVKEAVYTFNIMEKYDVPPNLAAFNSLLSALC 157

Query: 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE 518
           +S ++++A E  N + +   +P    Y+ L +G  K   +  A  + R+ + ++   P  
Sbjct: 158 KSKNVVKAQEIFNGMKDQF-IPDSKTYSILLEGWGKAPNLPKAREIFRE-MVDMGCDPDI 215

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
             Y + +  +C++G  ++ + ++ EM    C P   I S ++        +E+A   F +
Sbjct: 216 VTYGIMVDILCKAGRVDEAVGIVKEMDSSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLD 275

Query: 579 LRERKLLTEANTIVYDEIL 597
           +   ++  EA+  VY+ ++
Sbjct: 276 MERNEI--EADVAVYNALI 292


>gi|449442212|ref|XP_004138876.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g24830-like [Cucumis sativus]
 gi|449499387|ref|XP_004160802.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g24830-like [Cucumis sativus]
          Length = 633

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 190/433 (43%), Gaps = 28/433 (6%)

Query: 188 LEILEKMRRNLC---------------KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
           L+ L+ MR ++C               +PD   YT M+R L  +    A L +  ++ K+
Sbjct: 107 LDRLKTMRESICLAKSGLQKCVLEATQQPD---YTVMVRDLCLKGKFGAALLLRRKLIKE 163

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
               D++ +  L+ GLC    +     LFREM E G   + A Y ++I+G      + KA
Sbjct: 164 GFAVDLVTHNYLLNGLCINCDMEMADSLFREMLEMGPSPNCATYNIIIKGFCLRMNMDKA 223

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL--APDFSTVNPLL 350
            DL   +V+SG R     YN ++  LC+      A KL EV + DD+    D  T   L+
Sbjct: 224 LDLFYTMVNSGIRPSRITYNILLHALCKRGILVDARKLLEVILGDDIKTTDDAITSTILM 283

Query: 351 VCCAEMGRMDNFFKLLAQM--EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
             C + G       L  +M  +K +  V A         + ++++I  AL    ++  +G
Sbjct: 284 DSCFKSGDTIQAVALWDKMVEKKTEIDVVAYNVLIHGLCLNQDKKI--ALGYVADMLKRG 341

Query: 409 Y-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
           +   +  YN L+ A  + G+   A Y+   M  + +  + + + + IQ    +GD ++A 
Sbjct: 342 FLPDIFTYNTLISAFCKEGQFGDAYYIHDVMSRMGVSPDQILYKMIIQALCMNGDAIKAD 401

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
           E  + ++E S VP    +N +     + G +  A+   RD +      P  F Y   I  
Sbjct: 402 EFLHSMLEKSMVPEPHIWNLIIDCYGRYGYLSNAIS-KRDQMLVAGVQPNVFTYNALIHA 460

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
             R G       +  EM   G  P+ V  + +I+G CKHG L  A +++  +  +    E
Sbjct: 461 QVRGGNIFSAYSLKKEMLLLGLFPDVVTYNLLINGACKHGQLRFALQLYDEMLRKG--YE 518

Query: 588 ANTIVYDEILIEH 600
           A+ I Y E++  H
Sbjct: 519 ADKITYTELINGH 531



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 134/337 (39%), Gaps = 45/337 (13%)

Query: 177 LMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           LMDS    G   + + + +KM     + DV AY  +I  L   ++    L    +M K  
Sbjct: 282 LMDSCFKSGDTIQAVALWDKMVEKKTEIDVVAYNVLIHGLCLNQDKKIALGYVADMLKRG 341

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
              D+  Y TLI   CK G+    + +   M   G+  D+ +Y ++I+ L   G   KA 
Sbjct: 342 FLPDIFTYNTLISAFCKEGQFGDAYYIHDVMSRMGVSPDQILYKMIIQALCMNGDAIKAD 401

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           + L  +++     +  I+N II    R      A    +  +   + P+  T N L+   
Sbjct: 402 EFLHSMLEKSMVPEPHIWNLIIDCYGRYGYLSNAISKRDQMLVAGVQPNVFTYNALIHAQ 461

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
              G + + + L                        K+E +++ L          +  V 
Sbjct: 462 VRGGNIFSAYSL------------------------KKEMLLLGL----------FPDVV 487

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA----CEC 469
            YN+L+    + G+++ AL L+ +M     E + ++++  I  H   G++ EA     E 
Sbjct: 488 TYNLLINGACKHGQLRFALQLYDEMLRKGYEADKITYTELINGHCMCGEMKEAEDLFFEL 547

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           H   + M  VP    +  + +   KIGE D A+   R
Sbjct: 548 HRSGLPMDIVP----FKVIFEKYQKIGEPDMALKFYR 580


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/451 (23%), Positives = 193/451 (42%), Gaps = 55/451 (12%)

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYT 207
           + H  AS+N +         F   + +  L+ ++ R   ++ + ++   N   PD+   +
Sbjct: 39  HHHAVASFNLMLLMRPPPPTFLFNNILSSLVKNK-RYPTVISLFKQFEPNGITPDLCTLS 97

Query: 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
            +I     + ++     V+  + K     D +   TLI GLC  G + +      ++   
Sbjct: 98  ILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQ 157

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           G  +D+  YG LI GL   G+      LL+ L     + D+ +YN+II  LC+ K    A
Sbjct: 158 GFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDA 217

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
             ++   +   ++PD  T   L+     MG+M   F LL +M KLK ++  D+  F   +
Sbjct: 218 CDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEM-KLK-NINPDVYTFSVLI 275

Query: 388 --VGKEERIMM---ALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
             +GKE +  M   A+ +FEE+K K     +  YN L+  L +   +++A+ L  +M+  
Sbjct: 276 DALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMK-- 333

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
                                            E    P V +Y  L  GLCK G ++ A
Sbjct: 334 ---------------------------------EHGIQPDVYSYTILLDGLCKGGRLEIA 360

Query: 502 -----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
                 +LV+ C  NV      + Y + I  +C++G   + +++ ++M  +GC PN +  
Sbjct: 361 KEFFQHLLVKGCHLNV------WPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITF 414

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
             II  + +    ++A K+   +  R LL E
Sbjct: 415 RTIICALSEKDENDKAEKILREMIARGLLKE 445



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 154/356 (43%), Gaps = 9/356 (2%)

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  ++  L K  R      LF++ + NGI  D     +LI     +  +  A  +  +++
Sbjct: 61  FNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANIL 120

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G+  D    N++I GLC   +  K     +  V      D  +   L+    + G   
Sbjct: 121 KRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETK 180

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIYNI 417
              +LL ++E    SV  D+  +   +  + K + +  A DV+ E+  KG S  V  Y  
Sbjct: 181 AVARLLRKLEG--HSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTT 238

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD---ILEACECHNKII 474
           L+     +G++K+A  L  +M+  N+  +  +FS+ I    + G    + EA     ++ 
Sbjct: 239 LIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMK 298

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
             + +P +  YN L  GLCK   ++ A+ L+++ +      P  + Y + +  +C+ G  
Sbjct: 299 HKNMIPDIVTYNSLIDGLCKNHHLERAIALLKE-MKEHGIQPDVYSYTILLDGLCKGGRL 357

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           E   E    +  +GC  N    + +I+G+CK G   EA  + + +  +  +  A T
Sbjct: 358 EIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAIT 413


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 110/447 (24%), Positives = 194/447 (43%), Gaps = 53/447 (11%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G   +  + N LA CL   N                R++E L  +  + R    PD+  Y
Sbjct: 5   GLSPDLFTLNILANCLCNLN----------------RVSEGLAAMTGILRRGYIPDIVTY 48

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +I+ L     +                   +A   +I GLCK G      E+F EMK 
Sbjct: 49  NTLIKGLCRVHRIS------------------VATCIIIDGLCKVGHEDEAKEIFEEMKA 90

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G++ +   Y  L+ G    GK+ ++  L  ++VD G + +L  +N +I  LC+  +  +
Sbjct: 91  QGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIE 150

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-----EKLKFSVAADLE 381
           A KL EVT+Q  +  D  T N L+    ++G + +  KL   M     E  + S    + 
Sbjct: 151 AKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILIN 210

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
            + +       ++  A++++ E+   G   +V  Y+ L+  LL+ G+V  A  LFG M+ 
Sbjct: 211 GYCKIW-----KVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKA 265

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             + V+S  + I +    ++G + EA E  N++   +      +Y+ L  GLCK G+++ 
Sbjct: 266 SGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEI 325

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK---IIEVLNEMTQEGCPPNEVICS 557
           A    +  L      P      + I   CR  + +K   + E + +M + GC P+ +  +
Sbjct: 326 AWEFFKQ-LSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYN 384

Query: 558 AIISGMCKHGTLEEA----RKVFTNLR 580
            ++ G C+   LEE      K+F  +R
Sbjct: 385 TLLRGFCESNKLEEVVNLLHKMFKRMR 411



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 170/372 (45%), Gaps = 15/372 (4%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIA---EMLEILEKMRRNLCKP 201
           ++GY  +  +YN L   L R +    A  +  ++D   ++    E  EI E+M+     P
Sbjct: 38  RRGYIPDIVTYNTLIKGLCRVHRISVATCI--IIDGLCKVGHEDEAKEIFEEMKAQGMIP 95

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +V +Y++++        L+   R++ EM    V+ +++ +  LI  LCK G+V+   +L 
Sbjct: 96  NVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLL 155

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
               + GI++D   Y  LI+G    G +  A  L   +   G   +   Y  +I G C++
Sbjct: 156 EVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKI 215

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            + ++A  L+    Q    P+  T + LL    + G++ +  KL   M+    SV + + 
Sbjct: 216 WKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIY 275

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440
             F   + K   +  A+++F ELK   +      Y+ L+  L + G+V+ A   F ++  
Sbjct: 276 VIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQ 335

Query: 441 LNLEVNSLSFSIAIQ--CHVESGD----ILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
             L+ N ++ +I I   C VE  D    + E  E   K+ E    P +  YN L +G C+
Sbjct: 336 EGLQPNVVTCNIMIHGFCRVEQVDKANILFEKME---KMEENGCTPDIITYNTLLRGFCE 392

Query: 495 IGEIDAAMMLVR 506
             +++  + L+ 
Sbjct: 393 SNKLEEVVNLLH 404



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 161/375 (42%), Gaps = 70/375 (18%)

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF--- 324
           G+  D     +L   L    +V +    +  ++  GY  D+  YN++I GLCRV +    
Sbjct: 5   GLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISVA 64

Query: 325 --------------DKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQ 368
                         D+A ++FE      + P+  + + L+   CCA  G+++   +L  +
Sbjct: 65  TCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCA--GKLEESKRLFNE 122

Query: 369 M-------EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
           M         ++F+V  D       ++ KE +++ A  + E    +G    +  YN L+ 
Sbjct: 123 MVDQGVQPNLVQFNVLID-------ILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLID 175

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              +IG++  A  LF  M     E N +S++I I  + +   + EA   +N++ ++ + P
Sbjct: 176 GFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRP 235

Query: 481 SVAAYNCLTKGLCKIGEIDAAMML----------VRDCL------GNVASG--------- 515
           +V  Y+ L  GL + G++  A  L          V  C+      G   +G         
Sbjct: 236 NVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELF 295

Query: 516 ----PTEFK-----YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
                  FK     Y+  I  +C++G+ E   E   +++QEG  PN V C+ +I G C+ 
Sbjct: 296 NELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRV 355

Query: 567 GTLEEARKVFTNLRE 581
             +++A  +F  + +
Sbjct: 356 EQVDKANILFEKMEK 370



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 125/276 (45%), Gaps = 20/276 (7%)

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G   DL   N +   LC + +  +        ++    PD  T N L+           
Sbjct: 4   AGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLI----------- 52

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMG 420
             K L ++ ++  +    ++   +  VG E+    A ++FEE+K +G   +V  Y+ L+ 
Sbjct: 53  --KGLCRVHRISVATCIIIDGLCK--VGHEDE---AKEIFEEMKAQGMIPNVISYSSLVH 105

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
                G+++++  LF +M    ++ N + F++ I    + G ++EA +     I+   + 
Sbjct: 106 GFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIIL 165

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            +  YN L  G CKIG++ +A  L    + +      E  Y + I   C+  + E+ + +
Sbjct: 166 DLVTYNSLIDGFCKIGDLSSARKLFLS-MPSKGCEHNEISYTILINGYCKIWKVEEAMNL 224

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
            NEM Q G  PN    S +++G+ + G + +A K+F
Sbjct: 225 YNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLF 260



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 16/159 (10%)

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
            + +I   C      + E       I+    +P +  YN L KGLC++  I  A  ++ D
Sbjct: 11  FTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISVATCIIID 70

Query: 508 CLGNV--------------ASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551
            L  V              A G  P    Y+  +   C +G+ E+   + NEM  +G  P
Sbjct: 71  GLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQP 130

Query: 552 NEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           N V  + +I  +CK G + EA+K+     +R ++ +  T
Sbjct: 131 NLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVT 169


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 190/412 (46%), Gaps = 55/412 (13%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           CKP       M+ +L   R+ D    +++EM +  ++ +V  +  +I  LCK G++ +  
Sbjct: 191 CKP------LMVALLKQNRSADVEY-LYKEMIRRKIQPNVFTFNVVINALCKTGKMNKAR 243

Query: 259 ELFREMKENGILIDRAIYGVLIEG---LVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
           ++  +MK  G   +   Y  LI+G   L G GK+ KA  +LK++V++    +L  +N +I
Sbjct: 244 DVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILI 303

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            G  +      + K+F+  +  D+ P+  T N L+      G+++    +  +M  +   
Sbjct: 304 DGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKM--VSAG 361

Query: 376 VAADLEKFFEFLVGKEERIMM--ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
           V  +L  +   + G  +  MM  ALD+F+ +KG+G   +  +YN+L+ A  ++G++    
Sbjct: 362 VQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGF 421

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
                               A++  +E   I               VP V  YNCL  GL
Sbjct: 422 --------------------ALKEEMEREGI---------------VPDVGTYNCLIAGL 446

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           C+ G I+AA  L  D L N    P    + + +   C  GE+ K   +L EM++ G  P 
Sbjct: 447 CRNGNIEAAKKLF-DQLTNKGL-PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPR 504

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNL-RERKLLTEANTIVYDEILIEHMKK 603
            +  + ++ G CK G L+ A  + T + +ER+L    N   Y+ +L  + +K
Sbjct: 505 HLTYNIMMKGYCKEGNLKAATNMRTQMEKERRL--RMNVASYNVLLQGYSQK 554



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 180/428 (42%), Gaps = 79/428 (18%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q R A++  + ++M R   +P+VF +  +I  L     ++    V E+MK      +V++
Sbjct: 201 QNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVS 260

Query: 241 YVTLIMGLCK---GGRVVRGHELFREMKEN---------GILIDR--------------- 273
           Y TLI G CK    G++ +   + +EM EN          ILID                
Sbjct: 261 YNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFK 320

Query: 274 -----------AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
                        Y  LI GL   GK+ +A  +   +V +G + +L  Y+S+I G C+  
Sbjct: 321 EMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNG 380

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEK 382
              +A  +F+        P     N L+    ++G++D+ F L  +ME+    +  D+  
Sbjct: 381 MMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMERE--GIVPDVGT 438

Query: 383 FFEFLVG--KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
           +   + G  +   I  A  +F++L  KG   +  ++ILM      GE +KA  L  +M  
Sbjct: 439 YNCLIAGLCRNGNIEAAKKLFDQLTNKGLPDLVTFHILMEGYCSRGESRKAAMLLKEMSK 498

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP-SVAAYNCLTKGLCKIGEID 499
           + L+   L+++I ++ + + G++  A     ++ +  ++  +VA+YN L +G  + G+++
Sbjct: 499 MGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLE 558

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A ML                                    LNEM ++G  PN +    +
Sbjct: 559 DANML------------------------------------LNEMLEKGLVPNRITYEIV 582

Query: 560 ISGMCKHG 567
              M   G
Sbjct: 583 KEEMVDKG 590



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 159/369 (43%), Gaps = 53/369 (14%)

Query: 144 KQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201
           K  GY  N  SYN L   YC                +   G++ +   +L++M  N   P
Sbjct: 250 KVYGYSPNVVSYNTLIDGYCK---------------LGGNGKMYKADAVLKEMVENEVSP 294

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           ++  +  +I     + NL   L+V++EM    V  +V+ Y +LI GLC GG++     + 
Sbjct: 295 NLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMR 354

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            +M   G+  +   Y  LI G    G + +A D+   +   G R    +YN +I   C++
Sbjct: 355 DKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKL 414

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            + D  + L E   ++ + PD  T N L+      G ++   KL                
Sbjct: 415 GKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKL---------------- 458

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
                              F++L  KG   +  ++ILM      GE +KA  L  +M  +
Sbjct: 459 -------------------FDQLTNKGLPDLVTFHILMEGYCSRGESRKAAMLLKEMSKM 499

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP-SVAAYNCLTKGLCKIGEIDA 500
            L+   L+++I ++ + + G++  A     ++ +  ++  +VA+YN L +G  + G+++ 
Sbjct: 500 GLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLED 559

Query: 501 AMMLVRDCL 509
           A ML+ + L
Sbjct: 560 ANMLLNEML 568


>gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial [Vitis vinifera]
          Length = 817

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 185/411 (45%), Gaps = 41/411 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G+I   + I   ++R    P+ + Y   I+ L  + N +  + V+ EM++  V  + + 
Sbjct: 205 HGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVT 264

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             T I GLC   R   G+E  R ++     ID   Y  +I G   E K+ +A D+  D+V
Sbjct: 265 CSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMV 324

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G   D  IY ++I   C+     +A  L    V + +  +   V+ +L C  EMG   
Sbjct: 325 NEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNCVIVSSILQCLCEMG--- 381

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILM 419
                          +A+++                 +D F+E +  G +    +YNI++
Sbjct: 382 ---------------MASEV-----------------VDQFKEFRDSGIFLDEVLYNIVV 409

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            AL ++G+V++A+ L  +M+G  + ++ + ++  I  +   G +++A     ++ E    
Sbjct: 410 DALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIE 469

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P +  YN L  G  + G    A+ L+ DC+G     P    +   I  +C +G+ ++   
Sbjct: 470 PDIVTYNILVGGFSRNGLKKEALELL-DCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEA 528

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            LN + ++ C  N    SA++ G CK     +A ++F+ L ++ +L +  +
Sbjct: 529 FLNTL-EDKCLENY---SAMVDGYCKANFTRKAYELFSRLSKQGILVKKKS 575



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 101/461 (21%), Positives = 185/461 (40%), Gaps = 59/461 (12%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G  +E+++  ++ R +    D   Y  ++  L     ++  + +  EMK   +  DV+ Y
Sbjct: 381 GMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHY 440

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TLI G C  G++V    +F EMKE GI  D   Y +L+ G    G   +A +LL  +  
Sbjct: 441 TTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGT 500

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + +   +N II GLC   +  +A + F  T++D    ++S +            +D 
Sbjct: 501 QGLKPNSATHNRIIEGLCMAGKVKEA-EAFLNTLEDKCLENYSAM------------VDG 547

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
           + K  A   +  + + + L K                      +G        + +L   
Sbjct: 548 YCK--ANFTRKAYELFSRLSK----------------------QGILVKKKSCFKLLSSL 583

Query: 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
            +E GE  KAL L  +M  L++E N + +   I      GD+  A    + ++E    P 
Sbjct: 584 CME-GEYDKALILLERMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPD 642

Query: 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI-------------LHV 528
           V  Y  +  G C++  +  A  +  D +      P    Y + +             L  
Sbjct: 643 VITYTMMINGYCRVNCLREARDIFND-MKERGIKPDVITYTVVLDGHSKVNLKMARSLQF 701

Query: 529 CRSGEAEKIIE--VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
            +  E EK+      +EM + G  P+ V  + +I   CK   L++A  ++  +  R L  
Sbjct: 702 SKGSEEEKMDASPFWSEMKEMGIKPDVVCYTVLIDSHCKTNNLQDAINLYDEMIARGL-- 759

Query: 587 EANTIVYDEILIEHMKKKTAD---LVLSGLKFFGLESKLKA 624
           + + + Y  +L     +   D    +++ + F G+E   +A
Sbjct: 760 QPDIVTYTALLSSCCSRGDMDRAITLVNEMSFKGIEPDSRA 800



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 155/368 (42%), Gaps = 38/368 (10%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K++G + +  +YN L    SRN L + A ++ + + +QG                 KP+ 
Sbjct: 464 KERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQG----------------LKPNS 507

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             +  +I  L     +   ++  E     L +  +  Y  ++ G CK     + +ELF  
Sbjct: 508 ATHNRIIEGLC----MAGKVKEAEAFLNTLEDKCLENYSAMVDGYCKANFTRKAYELFSR 563

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           + + GIL+ +     L+  L  EG+  KA  LL+ ++      +  +Y  +IG  CR   
Sbjct: 564 LSKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLALDVEPNQIMYGKLIGAFCRDGD 623

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLL-----VCCAEMGRMDNFFKLLAQMEK---LKFS 375
             +A  +F++ V+  + PD  T   ++     V C    R D F  +  +  K   + ++
Sbjct: 624 MKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREAR-DIFNDMKERGIKPDVITYT 682

Query: 376 VAAD--------LEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426
           V  D        + +  +F  G EE  M A   + E+K  G    V  Y +L+ +  +  
Sbjct: 683 VVLDGHSKVNLKMARSLQFSKGSEEEKMDASPFWSEMKEMGIKPDVVCYTVLIDSHCKTN 742

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            ++ A+ L+ +M    L+ + ++++  +      GD+  A    N++      P   A +
Sbjct: 743 NLQDAINLYDEMIARGLQPDIVTYTALLSSCCSRGDMDRAITLVNEMSFKGIEPDSRAMS 802

Query: 487 CLTKGLCK 494
            L +G+ K
Sbjct: 803 VLHRGILK 810



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 128/314 (40%), Gaps = 27/314 (8%)

Query: 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV---QDDLAPDFSTVNP 348
           A      L +SG++ ++  Y ++I  LCR +   K   L    V   +  L  D + +  
Sbjct: 80  AWSFFTQLKESGFQHNVDTYAALIRVLCRWRLERKLQSLLSEIVGSKESVLGFDITAL-- 137

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM---ALDVFEELK 405
                        F  L     +++   ++ L    + LV    R+ M   A+D   + K
Sbjct: 138 -------------FDVLREGGGEVEGEHSSVLILVLDMLVKAYVRVGMFDEAIDALFQTK 184

Query: 406 GKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464
            +G+   +   N LM  L+E G++  A+ ++  ++ L L  N  ++ I I+     G+  
Sbjct: 185 RRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFE 244

Query: 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE-FKYAL 523
           EA +   ++ E    P+    +   +GLC     D     +R      A+ P + F Y  
Sbjct: 245 EAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRAL--RAANWPIDTFAYTA 302

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            I   C   + ++  +V  +M  EG  P+  I  A+I   CK G L +A  +  ++    
Sbjct: 303 VIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNG 362

Query: 584 LLTEANTIVYDEIL 597
           + T  N ++   IL
Sbjct: 363 IKT--NCVIVSSIL 374



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 11/192 (5%)

Query: 105 PQVVTELSKLRRVTPDLVAEVLKVEN----NPTLASKFFHWAGKQKGYKHNFASYNALAY 160
            Q+V ++   R +TPD++   + +      N    ++      K++G K +  +Y  +  
Sbjct: 627 AQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLD 686

Query: 161 CLSRNNLFRAADQVPELMDSQGRIAEMLE---ILEKMRRNLCKPDVFAYTAMIRVLAAER 217
             S+ NL  A      L  S+G   E ++      +M+    KPDV  YT +I       
Sbjct: 687 GHSKVNLKMA----RSLQFSKGSEEEKMDASPFWSEMKEMGIKPDVVCYTVLIDSHCKTN 742

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
           NL   + +++EM    ++ D++ Y  L+   C  G + R   L  EM   GI  D     
Sbjct: 743 NLQDAINLYDEMIARGLQPDIVTYTALLSSCCSRGDMDRAITLVNEMSFKGIEPDSRAMS 802

Query: 278 VLIEGLVGEGKV 289
           VL  G++   KV
Sbjct: 803 VLHRGILKARKV 814


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 192/427 (44%), Gaps = 20/427 (4%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R   ++   +KM       D++++T +I        L   L V  +M K   E  ++ + 
Sbjct: 86  RYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFG 145

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +L+ G C   R+     L   M ++G   +  +Y  LI+GL   G++  A +LL ++   
Sbjct: 146 SLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKK 205

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G  AD+  YN+++ GLC   ++  A ++    ++  + PD  T   L+    + G +D  
Sbjct: 206 GLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEA 265

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILM 419
            +L  +M  ++ SV  +   +   + G     R+  A   F+ +  KG + +V  YN L+
Sbjct: 266 QELYKEM--IQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLI 323

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               +   V + + LF +M       +  +++  I  + + G +  A +    ++     
Sbjct: 324 SGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVT 383

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDC------LGNVASGPTEFKYALTILHVCRSGE 533
           P +  +  L  GLC  GEI++A++   D       +G VA       Y + I  +C++ +
Sbjct: 384 PDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVA-------YNIMIHGLCKADK 436

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
            EK  E+   +  EG  P+    + +I G+CK+G   EA ++   ++E  ++ + N    
Sbjct: 437 VEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNA--E 494

Query: 594 DEILIEH 600
           D+ L EH
Sbjct: 495 DDHLEEH 501



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 176/431 (40%), Gaps = 56/431 (12%)

Query: 138 FFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG--------------- 182
           +F    +  G  H+  S+  L +C  R +    A  V   M   G               
Sbjct: 92  YFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGF 151

Query: 183 ----RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
               RI +   ++  M ++  +P+V  Y  +I  L     L+  L +  EM+K  + ADV
Sbjct: 152 CLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADV 211

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298
           + Y TL+ GLC  GR      + R+M +  I  D   +  LI+  V +G + +A +L K+
Sbjct: 212 VTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKE 271

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358
           ++ S    +   YNSII GLC   +   A K F++       P+  T N L+    +   
Sbjct: 272 MIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRM 331

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL 418
           +D   KL  +M    F+                       D+F             YN L
Sbjct: 332 VDEGMKLFQRMSCEGFNA----------------------DIFT------------YNTL 357

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    ++G+++ AL +F  M    +  + ++  I +     +G+I  A    + + E  +
Sbjct: 358 IHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEK 417

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDC-LGNVASGPTEFKYALTILHVCRSGEAEKI 537
              + AYN +  GLCK  +++ A  L   C L      P    Y + IL +C++G   + 
Sbjct: 418 YIGIVAYNIMIHGLCKADKVEKAWELF--CRLPVEGVKPDARTYTIMILGLCKNGPRREA 475

Query: 538 IEVLNEMTQEG 548
            E++  M +EG
Sbjct: 476 DELIRRMKEEG 486



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 117/503 (23%), Positives = 212/503 (42%), Gaps = 43/503 (8%)

Query: 34   SNRQSLRNPNSASEPHQSPPFNVQKWDP-------------HYLPNQKTQSPPSD-PKTF 79
            SN++   +     E  +S PF +Q+  P             HYL  ++  +P +   ++F
Sbjct: 504  SNKEISLSLREIWERSKSNPFWMQRLIPIAFSSSVKGFVRRHYLLLERGNNPETSLSRSF 563

Query: 80   QLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLV--AEVLKV--ENNPTLA 135
                H       + +     +F     +  E+ + R + P +V    VL V  + N    
Sbjct: 564  SGASHHHHYRERLRNELHCIKFDDAFSLFCEMLQSRPI-PSIVDFTRVLTVIAKMNKFDI 622

Query: 136  SKFFHWAGKQKGYKHNFASYNALAYCLSRNNL---------------FR-AADQVPELMD 179
              + +   +  G  H+  S+  L +C  R +                FR +   +  L++
Sbjct: 623  VIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLN 682

Query: 180  S--QG-RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
               QG R  E + +++ M      P+V  Y  +I  L   R+L+  L V+  M+K  + A
Sbjct: 683  GFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRA 742

Query: 237  DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
            D + Y TLI GL   GR      L R+M +  I  +   +  LI+  V EG + +A +L 
Sbjct: 743  DAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLY 802

Query: 297  KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            K+++      ++  YNS+I G C       A  +F++ V     PD  T N L+    + 
Sbjct: 803  KEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKS 862

Query: 357  GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVP 413
             R+++  KL  +M      +  D   +   + G  +  ++ +A  VF  +   G S  + 
Sbjct: 863  KRVEDGMKLFCEMTYQ--GLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIV 920

Query: 414  IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
             YNIL+  L   G+++KAL +   ++   ++V+ ++++I IQ    +  + EA      +
Sbjct: 921  TYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSL 980

Query: 474  IEMSQVPSVAAYNCLTKGLCKIG 496
                  P   AY  +  GLC+ G
Sbjct: 981  TRKGVKPDAIAYITMISGLCRKG 1003



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 113/504 (22%), Positives = 219/504 (43%), Gaps = 27/504 (5%)

Query: 125  VLKVENNP-TLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFR------AADQVPEL 177
            +L+  NNP T  S+ F  A     Y+      N L +C+  ++ F        +  +P +
Sbjct: 548  LLERGNNPETSLSRSFSGASHHHHYRERLR--NEL-HCIKFDDAFSLFCEMLQSRPIPSI 604

Query: 178  MDSQ---GRIAEM------LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
            +D       IA+M      + +  KM       D++++T +I        L   L +  +
Sbjct: 605  VDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGK 664

Query: 229  MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
            M K      ++   +L+ G C+G R      L   M   G + +  IY  +I GL     
Sbjct: 665  MMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRD 724

Query: 289  VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
            +  A ++   +   G RAD   YN++I GL    ++  A +L    V+  + P+      
Sbjct: 725  LNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 784

Query: 349  LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKG 406
            L+    + G +     L  +M  ++ SV  ++  +   + G      +  A  +F+ +  
Sbjct: 785  LIDTFVKEGNLLEARNLYKEM--IRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVS 842

Query: 407  KG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            KG +  V  YN L+    +   V+  + LF +M    L  ++ +++  I  + ++G +  
Sbjct: 843  KGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNV 902

Query: 466  ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
            A +  N++++    P +  YN L   LC  G+I+ A+++V D L           Y + I
Sbjct: 903  AQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVED-LQKSEMDVDIITYNIII 961

Query: 526  LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
              +CR+ + ++   +   +T++G  P+ +    +ISG+C+ G   EA K+   ++E   +
Sbjct: 962  QGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFM 1021

Query: 586  TEANTIVYDEILIEHMKKKTADLV 609
                  +YDE L +H    +A+L+
Sbjct: 1022 PSER--IYDETLRDHYTSLSAELI 1043



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 104/500 (20%), Positives = 208/500 (41%), Gaps = 40/500 (8%)

Query: 115 RRVTPDLVA-----EVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFR 169
           R + PD+V      +V   + N   A + +     Q     N  +YN++   L  +    
Sbjct: 240 RSINPDVVTFTALIDVFVKQGNLDEAQELYKEM-IQSSVDPNNVTYNSIINGLCMHGRLY 298

Query: 170 AADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
            A +  +LM S+G                C P+V  Y  +I      R +D  +++++ M
Sbjct: 299 DAKKTFDLMASKG----------------CFPNVVTYNTLISGFCKFRMVDEGMKLFQRM 342

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV 289
             +   AD+  Y TLI G C+ G++    ++F  M    +  D   + +L+ GL   G++
Sbjct: 343 SCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEI 402

Query: 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
             A     D+ +S     +  YN +I GLC+  + +KA++LF     + + PD  T   +
Sbjct: 403 ESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIM 462

Query: 350 LVCCAEMGRMDNFFKLLAQM--EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK 407
           ++   + G      +L+ +M  E +   + A+ +   E     +E  +   +++E  K  
Sbjct: 463 ILGLCKNGPRREADELIRRMKEEGIICQMNAEDDHLEEHSSSNKEISLSLREIWERSKSN 522

Query: 408 GYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN-SLSFSIAIQCHVESGDILEA 466
            +    +  I   + ++ G V++   L    RG N E + S SFS A   H     +   
Sbjct: 523 PFWMQRLIPIAFSSSVK-GFVRRHYLLLE--RGNNPETSLSRSFSGASHHHHYRERLRNE 579

Query: 467 CEC------HNKIIEMSQ---VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
             C       +   EM Q   +PS+  +  +   + K+ + D  + L    + N+     
Sbjct: 580 LHCIKFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHK-MENLGISHD 638

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
            + + + I   CR       + +L +M + G  P+ V   ++++G C+    +EA  +  
Sbjct: 639 LYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVD 698

Query: 578 NLRERKLLTEANTIVYDEIL 597
           ++     +   N ++Y+ ++
Sbjct: 699 SMDGFGFV--PNVVIYNTVI 716



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 5/186 (2%)

Query: 401 FEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
           FE +  +   S+  +  L+ A   +   +  +Y   KM    +  +  SF+I I C    
Sbjct: 60  FEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRC 119

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTE 518
             +  A     K++++   PS+  +  L  G C +  I  A  LV   +  V SG  P  
Sbjct: 120 SRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLV---ILMVKSGYEPNV 176

Query: 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578
             Y   I  +C++GE    +E+LNEM ++G   + V  + +++G+C  G   +A ++  +
Sbjct: 177 VVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRD 236

Query: 579 LRERKL 584
           + +R +
Sbjct: 237 MMKRSI 242


>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
 gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
 gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 800

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 196/440 (44%), Gaps = 32/440 (7%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD F Y  +I  L   R +   L +WE+M +  V+  ++ Y +L++  C  G +    +L
Sbjct: 384 PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKL 443

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC- 319
           + EM   G   +   Y  L++G + +    KA  LL ++  +G   +   YN++I GLC 
Sbjct: 444 YTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCV 503

Query: 320 --RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
             RV +  +  K FE    +   P   T N ++    + G M + F +  QM      + 
Sbjct: 504 VGRVCEVGEMLKRFET---EGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM--CAKGIP 558

Query: 378 ADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL 434
            ++  +  F+ G  K     +AL +  +++ KG    +  YN L+    + G +  AL +
Sbjct: 559 PNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQV 618

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
              M    L  N   ++  I  +     + EA   + K+I+       A Y  L  G  K
Sbjct: 619 LVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSK 678

Query: 495 IGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
            G +  A+ L  + +  GN+   P    +      +CR+G+ +   ++L+EM +    PN
Sbjct: 679 DGNVTFALKLYSEMVAKGNI---PDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPN 735

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSG 612
            ++ + +I+G  ++G L+EA ++   + ERK++ +  T  YD              +L G
Sbjct: 736 VLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTT--YD--------------ILVG 779

Query: 613 LKFFGLESKLKAKGCKLLSS 632
           +K  G +S + A+   L S+
Sbjct: 780 MKSLGSDSPIDAENPNLSST 799



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 203/461 (44%), Gaps = 21/461 (4%)

Query: 172 DQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK 231
           + V +++   GR+ E L I +++     K  V   T ++     +R +   L ++EE  +
Sbjct: 251 NSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLR 310

Query: 232 D-LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
           D LV  DV  Y  LI G  + G   + +EL R+M+++G+L     + ++I+GL+ +    
Sbjct: 311 DGLVPTDV-TYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWK 369

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            A  L K++ DSG   D   YN +I  LC+ ++  +A  L+E   +  + P   T + LL
Sbjct: 370 DAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLL 428

Query: 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKG 408
           +C    G MD   KL  +M    F+   ++  +   + G   +     A  +  E+K  G
Sbjct: 429 LCYCVNGCMDEAVKLYTEMPGKGFT--PNVVTYTTLMKGHINKAAFDKAYALLAEMKQNG 486

Query: 409 YSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
            S     YN L+  L  +G V +   +  +         +++++  I   +++G +  A 
Sbjct: 487 VSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAF 546

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYALTI 525
             + ++      P++  Y     G CK    D A+ ++ D  C G     P    Y   I
Sbjct: 547 AVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKG---LRPDIAAYNSLI 603

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
              C+ G     ++VL  M ++G  PN  + ++ I+G      +EEA +++  + +  + 
Sbjct: 604 FGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGI- 662

Query: 586 TEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKG 626
            + +T  Y  ++    K       L       L S++ AKG
Sbjct: 663 -DLDTATYTTLIDGFSKDGNVTFALK------LYSEMVAKG 696



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 185/414 (44%), Gaps = 7/414 (1%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           D + +  ++R    E   D  +R+++EM    +E D       I  LCK     R   + 
Sbjct: 176 DAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVL 235

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           R+M++ G +     +  +++ LV  G++ +A  +  +L+ +G +  + +  +++ G C  
Sbjct: 236 RKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQ 295

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
           ++  KA  +FE T++D L P   T   L+  C E G  +  ++L  QM      +     
Sbjct: 296 REVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMR--DHGLLPSTN 353

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
           +F   + G   ++    A+ +F+E+   G      YNIL+  L +  ++++AL L+ KM 
Sbjct: 354 EFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMN 413

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              ++   +++   + C+  +G + EA + + ++      P+V  Y  L KG       D
Sbjct: 414 ETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFD 473

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A  L+ +   N  S   ++ Y   I  +C  G   ++ E+L     EG  P  +  ++I
Sbjct: 474 KAYALLAEMKQNGVSC-NDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSI 532

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
           I+G  K G +  A  V+  +  + +    N + Y   +  + K    DL L  L
Sbjct: 533 INGFIKAGMMGSAFAVYQQMCAKGI--PPNIVTYTSFIDGYCKTSCCDLALKML 584



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 16/205 (7%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           KG + + A+YN+L +   +                +G ++  L++L  M ++   P++  
Sbjct: 590 KGLRPDIAAYNSLIFGFCQ----------------EGNMSHALQVLVLMLKDGLLPNISV 633

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y + I      + ++  LR++E+M K+ ++ D   Y TLI G  K G V    +L+ EM 
Sbjct: 634 YNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMV 693

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
             G + D   +  L  GL   G +  A  LL ++     R ++ +YN +I G  R  +  
Sbjct: 694 AKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQ 753

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLL 350
           +A++L +  ++  + PD +T + L+
Sbjct: 754 EAFRLHDEMLERKIMPDDTTYDILV 778



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 3/202 (1%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L++L  +R    +PD+ AY ++I     E N+   L+V   M KD +  ++  Y + I G
Sbjct: 581 LKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITG 640

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
                 +     L+ +M + GI +D A Y  LI+G   +G V  A  L  ++V  G   D
Sbjct: 641 YKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPD 700

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
              + ++  GLCR    D A KL +   + D+ P+    N L+      G++   F+L  
Sbjct: 701 HITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHD 760

Query: 368 QMEKLKFSVAADLEKFFEFLVG 389
           +M  L+  +  D +  ++ LVG
Sbjct: 761 EM--LERKIMPD-DTTYDILVG 779



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 145/329 (44%), Gaps = 19/329 (5%)

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G   D  +++ ++    +   +D A +LF+     ++ PD    +  +    ++   +  
Sbjct: 172 GRPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRA 231

Query: 363 FKLLAQMEKLKFSVAAD--LEKFFEFLVGKEERIMMALDVFEEL--KGKGYSSVPIYNIL 418
             +L +M+   F V  D       + LV K  R+  AL + +EL   GK  S V    ++
Sbjct: 232 LLVLRKMQDAGF-VPWDFTFNSVVDVLV-KGGRMEEALHIKDELLATGKKMSVVLATTLM 289

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
            G  L+  EV+KAL +F +     L    +++++ I+   E G   +A E   ++ +   
Sbjct: 290 HGYCLQ-REVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGL 348

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG-PTEFKYALTILHVCRSGEAEKI 537
           +PS   +N + KGL        A+ L ++      SG P  F Y + I  +C+  +  + 
Sbjct: 349 LPSTNEFNMVIKGLLNDKLWKDAVSLFKEM---ADSGIPDAFTYNILIHWLCQRRKIREA 405

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           + +  +M + G  P  V   +++   C +G ++EA K++T +  +      N + Y  ++
Sbjct: 406 LNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGF--TPNVVTYTTLM 463

Query: 598 IEHMKKKTADLVLSGLKFFGLESKLKAKG 626
             H+ K   D      K + L +++K  G
Sbjct: 464 KGHINKAAFD------KAYALLAEMKQNG 486


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 196/440 (44%), Gaps = 32/440 (7%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD F Y  +I  L   R +   L +WE+M +  V+  ++ Y +L++  C  G +    +L
Sbjct: 384 PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKL 443

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC- 319
           + EM   G   +   Y  L++G + +    KA  LL ++  +G   +   YN++I GLC 
Sbjct: 444 YTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCV 503

Query: 320 --RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA 377
             RV +  +  K FE    +   P   T N ++    + G M + F +  QM      + 
Sbjct: 504 VGRVCEVGEMLKRFET---EGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM--CAKGIP 558

Query: 378 ADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL 434
            ++  +  F+ G  K     +AL +  +++ KG    +  YN L+    + G +  AL +
Sbjct: 559 PNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQV 618

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
              M    L  N   ++  I  +     + EA   + K+I+       A Y  L  G  K
Sbjct: 619 LVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSK 678

Query: 495 IGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
            G +  A+ L  + +  GN+   P    +      +CR+G+ +   ++L+EM +    PN
Sbjct: 679 DGNVTFALKLYSEMVAKGNI---PDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPN 735

Query: 553 EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSG 612
            ++ + +I+G  ++G L+EA ++   + ERK++ +  T  YD              +L G
Sbjct: 736 VLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTT--YD--------------ILVG 779

Query: 613 LKFFGLESKLKAKGCKLLSS 632
           +K  G +S + A+   L S+
Sbjct: 780 MKSLGSDSPIDAENPNLSST 799



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 185/414 (44%), Gaps = 7/414 (1%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           D + +  ++R    E   D  +R+++EM    +E D       I  LCK     R   + 
Sbjct: 176 DAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVL 235

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           R+M++ G +     +  +++ LV  G++ +A  +  +L+ +G +  + +  +++ G C  
Sbjct: 236 RKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQ 295

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
           ++  KA  +FE T++D L P   T   L+  C E G  +  ++L  QM      +     
Sbjct: 296 REVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMR--DHGLLPSTN 353

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
           +F   + G   ++    A+ +F+E+   G      YNIL+  L +  ++++AL L+ KM 
Sbjct: 354 EFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMN 413

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              ++   +++   + C+  +G + EA + + ++      P+V  Y  L KG       D
Sbjct: 414 ETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFD 473

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A  L+ +   N  S   ++ Y   I  +C  G   ++ E+L     EG  P  +  ++I
Sbjct: 474 KAYALLAEMKQNGVSC-NDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSI 532

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613
           I+G  K G +  A  V+  +  + +    N + Y   +  + K    DL L  L
Sbjct: 533 INGFIKAGMMGSAFAVYQQMCAKGI--PPNIVTYTSFIDGYCKTSCCDLALKML 584



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 202/461 (43%), Gaps = 21/461 (4%)

Query: 172 DQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKK 231
           + V +++   GR+ E L I +++     K  V   T ++     +R +   L ++EE  +
Sbjct: 251 NSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLR 310

Query: 232 D-LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
           D LV  DV  Y  LI G  + G   + +EL R+M+++G+L     + ++I+GL+ +    
Sbjct: 311 DGLVPTDV-TYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWK 369

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            A  L K++ DSG   D   YN +I  LC+ ++  +A  L+E   +  + P   T + LL
Sbjct: 370 DAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLL 428

Query: 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM--ALDVFEELKGKG 408
           +C    G MD   KL  +M    F+   ++  +   + G   +     A  +  E+K  G
Sbjct: 429 LCYCVNGCMDEAVKLYTEMPGKGFT--PNVVTYTTLMKGHINKAAFDKAYALLAEMKQNG 486

Query: 409 YSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
            S     YN L+  L  +G V +   +  +         +++++  I   +++G +  A 
Sbjct: 487 VSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAF 546

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD--CLGNVASGPTEFKYALTI 525
             + ++      P++  Y     G CK    D A+ ++ D  C G     P    Y   I
Sbjct: 547 AVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKG---LRPDIAAYNSLI 603

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
              C+ G     ++VL  M ++G  PN  + ++ I+G      +EEA + +  + +  + 
Sbjct: 604 YGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGI- 662

Query: 586 TEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKG 626
            + +T  Y  ++    K       L       L S++ AKG
Sbjct: 663 -DLDTATYTTLIDGFSKDGNVTFALK------LYSEMVAKG 696



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 16/205 (7%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFA 205
           KG + + A+YN+L Y   +                +G ++  L++L  M ++   P++  
Sbjct: 590 KGLRPDIAAYNSLIYGFCQ----------------EGNMSHALQVLVLMLKDGLLPNISV 633

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           Y + I      + ++  LR +E+M K+ ++ D   Y TLI G  K G V    +L+ EM 
Sbjct: 634 YNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMV 693

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
             G + D   +  L  GL   G +  A  LL ++     R ++ +YN +I G  R  +  
Sbjct: 694 AKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQ 753

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLL 350
           +A++L +  ++  + PD +T + L+
Sbjct: 754 EAFRLHDEMLERKIMPDDTTYDILV 778



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 3/202 (1%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L++L  +R    +PD+ AY ++I     E N+   L+V   M KD +  ++  Y + I G
Sbjct: 581 LKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITG 640

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
                 +      + +M + GI +D A Y  LI+G   +G V  A  L  ++V  G   D
Sbjct: 641 YKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPD 700

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
              + ++  GLCR    D A KL +   + D+ P+    N L+      G++   F+L  
Sbjct: 701 HITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHD 760

Query: 368 QMEKLKFSVAADLEKFFEFLVG 389
           +M  L+  +  D +  ++ LVG
Sbjct: 761 EM--LERKIMPD-DTTYDILVG 779



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 146/329 (44%), Gaps = 19/329 (5%)

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G+  D  +++ ++    +   +D A +LF+     ++ PD    +  +    ++   +  
Sbjct: 172 GHPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRA 231

Query: 363 FKLLAQMEKLKFSVAAD--LEKFFEFLVGKEERIMMALDVFEEL--KGKGYSSVPIYNIL 418
             +L +M+   F V  D       + LV K  R+  AL + +EL   GK  S V    ++
Sbjct: 232 LLVLRKMQDAGF-VPWDFTFNSVVDVLV-KGGRMEEALHIKDELLATGKKMSVVLATTLM 289

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
            G  L+  EV+KAL +F +     L    +++++ I+   E G   +A E   ++ +   
Sbjct: 290 HGYCLQ-REVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGL 348

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG-PTEFKYALTILHVCRSGEAEKI 537
           +PS   +N + KGL        A+ L ++      SG P  F Y + I  +C+  +  + 
Sbjct: 349 LPSTNEFNMVIKGLLNDKLWKDAVSLFKEM---ADSGIPDAFTYNILIHWLCQRRKIREA 405

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
           + +  +M + G  P  V   +++   C +G ++EA K++T +  +      N + Y  ++
Sbjct: 406 LNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGF--TPNVVTYTTLM 463

Query: 598 IEHMKKKTADLVLSGLKFFGLESKLKAKG 626
             H+ K   D      K + L +++K  G
Sbjct: 464 KGHINKAAFD------KAYALLAEMKQNG 486


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 131/524 (25%), Positives = 218/524 (41%), Gaps = 58/524 (11%)

Query: 72  PPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENN 131
           P S      LQ++  P +  I+  F  N        V+  + L    P L A        
Sbjct: 21  PISISFLILLQKNFIPYSS-ISTTFHSNDVDGA---VSLFNSLLHQNPTLTAFEFNKILG 76

Query: 132 PTLASKFFHWA---GKQ---KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIA 185
             + SK +H      +Q   +G   NF ++N L  C  +                 G I 
Sbjct: 77  SLVKSKHYHTVLSLSQQMEFEGINPNFVTFNILINCFCQ----------------LGLIP 120

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
               +L K+ +   +PD+      I+    +  +   L   +++       D ++Y TLI
Sbjct: 121 FAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLI 180

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
            GLCK G      +L R +    + ++  +Y  +I+G+  +  V  A DL  ++V     
Sbjct: 181 NGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRIS 240

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365
            D+  Y+++I G   V +   A  LF   + +++ PD  T N L+    + GR+     +
Sbjct: 241 PDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNV 300

Query: 366 LAQM--EKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYNILM 419
           L  M  + +K +V+      F  LV    K+ ++     VF  +  +G   +V  Y  LM
Sbjct: 301 LDMMMIQDIKPNVST-----FNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLM 355

Query: 420 GALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGD--ILEACECHNKIIE 475
                + +V KA  +F  M  RG+   V+S +  I   C ++  D  +    E H+K I 
Sbjct: 356 DGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHI- 414

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
              +P V  YN L  GLCK G+I  A  LV + + +    P    Y  +IL+        
Sbjct: 415 ---IPDVVTYNSLIDGLCKSGKISYAFQLVNE-MHDRGQPPNIITYN-SILN-------- 461

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
               +L ++  +G  PN    + +I G+C+ G LE ARKVF +L
Sbjct: 462 ---ALLTKLKDQGIQPNMHTDTILIKGLCQSGKLEAARKVFEDL 502



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 78/170 (45%), Gaps = 1/170 (0%)

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           +N ++G+L++       L L  +M    +  N ++F+I I C  + G I  A     KI+
Sbjct: 71  FNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKIL 130

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           +M   P +   N   KG C  G+I  A+    D L  +     +  Y   I  +C+ GE 
Sbjct: 131 KMGYEPDIITLNTFIKGFCLKGQIHQALNF-HDKLVALGFHLDQVSYGTLINGLCKVGET 189

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
              +++L  +  +    N V+ + +I GM K   + +A  +++ +  +++
Sbjct: 190 RAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRI 239



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 43/181 (23%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPD 202
           ++G K N  +Y +L   YCL +                  ++ +  +I   M +     +
Sbjct: 341 KQGIKPNVVTYCSLMDGYCLVK------------------QVNKAKKIFNTMSQRGVTAN 382

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
           V +Y  MI      + +D  ++++ EM    +  DV+ Y +LI GLCK G++    +L  
Sbjct: 383 VHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVN 442

Query: 263 EM-----------------------KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           EM                       K+ GI  +     +LI+GL   GK+  A  + +DL
Sbjct: 443 EMHDRGQPPNIITYNSILNALLTKLKDQGIQPNMHTDTILIKGLCQSGKLEAARKVFEDL 502

Query: 300 V 300
           +
Sbjct: 503 L 503


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 189/433 (43%), Gaps = 31/433 (7%)

Query: 155 YNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
           +N +   L + N F+ A    + M+ +G                 +P++F +  +I   +
Sbjct: 56  FNKILSSLVKMNHFKIAISFSQQMELKG----------------IQPEMFTFNILINCFS 99

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
               L+    +  ++ K   + D +   TL+ GLC  G+V         +      +D+ 
Sbjct: 100 HLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQV 159

Query: 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGY---RADLGIYNSIIGGLCRVKQFDKAYKLF 331
            YG LI GL   G+   A  LL+ +   G    R D+ +Y +II   C+ K    AY L+
Sbjct: 160 SYGTLINGLCKSGETRAALQLLRKI--EGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLY 217

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG-- 389
              +   + P+  T N L+     +G++     LL +M     +V  ++  F   + G  
Sbjct: 218 SEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSL--NNVNPNVYTFNILIDGLC 275

Query: 390 KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFG--KMRGLNLEVN 446
           KE  +  A  V   +  +G   +V  Y  LM     + EV KA ++F    +RG+   V+
Sbjct: 276 KEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVH 335

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           S S  I   C  +  D  EA +   ++   +  P+   Y+ L  GLCK G I     L+ 
Sbjct: 336 SYSVMINGLCKNKMVD--EAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLI- 392

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
           D + N         Y   +  +C++ + +K I +L +M  EG  P+    + ++ G+CK+
Sbjct: 393 DEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKN 452

Query: 567 GTLEEARKVFTNL 579
           G L++A++++ +L
Sbjct: 453 GRLKDAQRIYQDL 465



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 179/407 (43%), Gaps = 44/407 (10%)

Query: 182 GRIAEMLEILEKMR-RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           G     L++L K+    L +PDV  YTA+I     ++ +     ++ EM    +  +V+ 
Sbjct: 172 GETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVT 231

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + +LI G C  G++     L  EM  N +  +   + +LI+GL  EG+V KA  +L  ++
Sbjct: 232 FNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMI 291

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   ++  Y S++ G   VK+ +KA  +F       + P+  + + ++    +   +D
Sbjct: 292 KQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVD 351

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNI 417
              KL  +M  LK ++  +   +   + G  K  RI    D+ +E+  +G  +++  YN 
Sbjct: 352 EAVKLFKEMH-LK-NMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNS 409

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L +  +V KA+ L  KM+   ++                                 
Sbjct: 410 LLNGLCKNHQVDKAIALLTKMKDEGIQ--------------------------------- 436

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK-YALTILHVCRSGEAEK 536
             P ++ Y  L  GLCK G +  A  + +D L      P   + Y + I  +C+ G  ++
Sbjct: 437 --PDMSTYTTLVDGLCKNGRLKDAQRIYQDLL--CKGYPLNIRMYTVMINGLCKEGFFDE 492

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583
            + +L++M   GC P+ V    +IS + K+    +A K+   +  R+
Sbjct: 493 ALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREMIARE 539



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 114/259 (44%), Gaps = 36/259 (13%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + +   +L  M +   +P+V  YT+++      + ++    V+  +    V  +V +
Sbjct: 277 EGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHS 336

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I GLCK   V    +LF+EM    +  +   Y  LI+GL   G++    DL+ ++ 
Sbjct: 337 YSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEIN 396

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G  A++  YNS++ GLC+  Q DKA  L      + + PD ST   L+    + GR+ 
Sbjct: 397 NRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLK 456

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
           +                                   A  ++++L  KGY  ++ +Y +++
Sbjct: 457 D-----------------------------------AQRIYQDLLCKGYPLNIRMYTVMI 481

Query: 420 GALLEIGEVKKALYLFGKM 438
             L + G   +AL L  +M
Sbjct: 482 NGLCKEGFFDEALSLLSQM 500



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 16/156 (10%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            +G   N  +YN+L   L +N+                ++ + + +L KM+    +PD+ 
Sbjct: 397 NRGQPANIITYNSLLNGLCKNH----------------QVDKAIALLTKMKDEGIQPDMS 440

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            YT ++  L     L    R+++++       ++  Y  +I GLCK G       L  +M
Sbjct: 441 TYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQM 500

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           ++NG + D   Y  LI  L    K GKA  LL++++
Sbjct: 501 EDNGCMPDAVTYETLISALFKNNKNGKAVKLLREMI 536



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 10/236 (4%)

Query: 390 KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           K     +A+   ++++ KG    +  +NIL+     + ++  A  +  K+  L  + +++
Sbjct: 65  KMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFSMVAKILKLGYQPDTV 124

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
           + +  ++    +G + EA   H+ +I         +Y  L  GLCK GE  AA+ L+R  
Sbjct: 125 TVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKI 184

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
            G +   P    Y   I   C+        ++ +EM  +   PN V  +++I G C  G 
Sbjct: 185 EGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQ 244

Query: 569 LEEARKVFTNLRERKLLTEANTIVYD-EILIEHMKK----KTADLVLSGLKFFGLE 619
           L+EA  +   +     L   N  VY   ILI+ + K    K A  VLS +   G+E
Sbjct: 245 LKEAVGLLNEMS----LNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVE 296


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 170/435 (39%), Gaps = 86/435 (19%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           + G + N   YN+L  C  R                  R+ E+LEI+E       +  V 
Sbjct: 160 RHGVRLNALCYNSLLDCYVRRK-------------DDARVQELLEIMEN---GGIEATVG 203

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            YT ++  L+   ++     V +EMK   V  DV  Y  +I   C+ G V R  E+F E 
Sbjct: 204 TYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDEC 263

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
             NGI  +   YGVLI G    G++  A  LL D+   G   +  I+N++I G CR    
Sbjct: 264 VGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCR---- 319

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384
                                           G +DN  K+ A MEK+            
Sbjct: 320 -------------------------------QGMVDNALKVKAAMEKMGIE--------- 339

Query: 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444
                        LDV+             YN L   L  +  + +A  L   M    + 
Sbjct: 340 -------------LDVY------------TYNTLACGLCRVNRMAEAKTLLHIMIEKGVP 374

Query: 445 VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504
            N ++++  I  H + GD++EA     ++     +PSV  YN +  G  K G I  A   
Sbjct: 375 PNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERF 434

Query: 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564
            R  +      P  + YA  +   C +G+ +  +++  EM   G  PN V  +A+ISG+ 
Sbjct: 435 -RKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLA 493

Query: 565 KHGTLEEARKVFTNL 579
           K G  EEA +++ ++
Sbjct: 494 KEGRSEEAFQLYDDM 508



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 19/212 (8%)

Query: 142 AGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS-------------------QG 182
           A ++ G + +  +YN LA  L R N    A  +  +M                     +G
Sbjct: 332 AMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEG 391

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
            + E   +  +M      P V  Y  M+     + ++    R  +EM+K  +  DV  Y 
Sbjct: 392 DMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYA 451

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           +L+ G C  G+V    +LF EMK  G   +   Y  LI GL  EG+  +A  L  D++ +
Sbjct: 452 SLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQLYDDMLKA 511

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334
           G   D  +Y++++G L    + D  +K  +V+
Sbjct: 512 GLTPDDSLYSALVGSLHTDNRKDIHHKQIKVS 543



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 8/208 (3%)

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           ++++    + G V  A  L  +M    + +N+L ++  + C+V   D     E   +I+E
Sbjct: 136 SVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELL-EIME 194

Query: 476 MSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
              +  +V  Y  L   L   G+I     +V +      +G   + Y   I   CR+G  
Sbjct: 195 NGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDV-YLYTAVINAYCRAGNV 253

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
            +  EV +E    G  PNE     +I+G CK G +E A  +  +++ R +    N I+++
Sbjct: 254 RRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGV--GHNQIIFN 311

Query: 595 EILIEHMKKKTADLVL---SGLKFFGLE 619
            ++  + ++   D  L   + ++  G+E
Sbjct: 312 TMIDGYCRQGMVDNALKVKAAMEKMGIE 339


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 182/448 (40%), Gaps = 47/448 (10%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA-DVMA 240
           GR A++      +     +PD FA+   ++   A  +L   + +   M +D     +  +
Sbjct: 143 GRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFS 202

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  +I G+ + GR     E+F EM E  +L +   Y  +I+G +  G +     L   +V
Sbjct: 203 YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMV 262

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + +   YN ++ GLCR  +  +   L +      + PD  T + L    +  G   
Sbjct: 263 CHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSK 322

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYNI 417
               L  +  K   ++           + K+ ++ +A +V + L   G   VP   IYN 
Sbjct: 323 AMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGL--VPTRVIYNT 380

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+    + GE++ A   FG+M+  +++                                 
Sbjct: 381 LINGYCQTGELEGAFSTFGQMKSRHIK--------------------------------- 407

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P    YN L  GLCK   I  A  L+ +   N    PT   +   I    R+G+ EK 
Sbjct: 408 --PDHITYNALINGLCKAERITNAQDLLMEMQDN-GVNPTVETFNTLIDAYGRTGQLEKC 464

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
             VL+EM + G  PN V   +I++  CK+G + EA  +  ++  + +L  A   VY+ I+
Sbjct: 465 FIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQ--VYNAII 522

Query: 598 ---IEHMKKKTADLVLSGLKFFGLESKL 622
              +EH     A +++  +K  G+   +
Sbjct: 523 DAYVEHGPNDQAFILVEKMKSNGISPSI 550



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 115/498 (23%), Positives = 206/498 (41%), Gaps = 65/498 (13%)

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
           NA +Y +    ++RA           GR  + +E+ ++M      P+   Y  MI     
Sbjct: 199 NAFSYNVVIAGMWRA-----------GRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIK 247

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK---------- 265
             +L+A  R+ ++M    ++ + + Y  L+ GLC+ GR+     L  EM           
Sbjct: 248 GGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFT 307

Query: 266 -------------------------ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
                                    +NG+ I      +L+ GL  +GKV  A ++L+ LV
Sbjct: 308 YSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLV 367

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGR 358
           ++G      IYN++I G C+  + + A+  F       + PD  T N L+  +C AE  R
Sbjct: 368 NAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAE--R 425

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS-SVPIY 415
           + N   LL +M+     V   +E F   +   G+  ++     V  E++  G   +V  Y
Sbjct: 426 ITNAQDLLMEMQ--DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSY 483

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             ++ A  + G++ +A+ +   M   ++  N+  ++  I  +VE G   +A     K+  
Sbjct: 484 GSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKS 543

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               PS+  YN L KGLC   +I  A  ++ + L N    P    Y   I   C  G  +
Sbjct: 544 NGISPSIVTYNLLIKGLCNQSQISEAEEII-NSLSNHRLIPDAVSYNTLISACCYRGNID 602

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE---------RKLLT 586
           K +++   M + G          +ISG+   G L E   ++  + +           ++ 
Sbjct: 603 KALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMV 662

Query: 587 EANTIVYDEILIEHMKKK 604
           EA +   +EI  E ++K+
Sbjct: 663 EAYSKYGNEIKAEDLRKE 680



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 62/121 (51%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           +Q +I+E  EI+  +  +   PD  +Y  +I       N+D  L + + M K  +++ V 
Sbjct: 562 NQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVR 621

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI GL   GR+     L+++M +N ++   AI+ +++E     G   KA DL K++
Sbjct: 622 TYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 681

Query: 300 V 300
           +
Sbjct: 682 L 682


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 188/449 (41%), Gaps = 13/449 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G + E L+ LE+M      PDV A T++IR            R+ E ++      DV+ 
Sbjct: 120 NGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVIT 179

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK G + +  ++   M    +  D   Y  ++  L   GK+ +A ++L   +
Sbjct: 180 YNVLIGGYCKSGEIDKALQVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQM 236

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 D+  Y  +I   C      +A KL +   +    PD  T N L+    + GR+D
Sbjct: 237 QRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLD 296

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
              K L  M                  +    R M A  +  ++  KG S SV  +NIL+
Sbjct: 297 EAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILI 356

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
             L     + +A+ +  KM       NSLS++  +    +   +  A E    ++     
Sbjct: 357 NFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCY 416

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P +  YN L   LCK G+ DAA+ ++   L +    P    Y   I  + + G+ E   E
Sbjct: 417 PDIVTYNTLLTALCKDGKADAAVEILNQ-LSSKGCSPVLITYNTVIDGLTKVGKTEYAAE 475

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599
           +L EM ++G  P+ +  S ++ G+   G ++EA K+F ++    L  + + + Y+ I++ 
Sbjct: 476 LLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDM--EGLSIKPSAVTYNAIMLG 533

Query: 600 HMKKKTADLVLSGLKFFGLESKLKAKGCK 628
             K +     +  L +      +  KGCK
Sbjct: 534 LCKAQQTSRAIDFLAY------MVEKGCK 556



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 166/357 (46%), Gaps = 17/357 (4%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           L DS G++ E +E+L++  +  C PDV  YT +I     +  +   +++ +EM+K   + 
Sbjct: 219 LCDS-GKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKP 277

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           DV+ Y  LI G+CK GR+    +    M   G   +   + +++  +   G+   A  LL
Sbjct: 278 DVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLL 337

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
            D++  G    +  +N +I  LCR +   +A  + E   +    P+  + NPLL    + 
Sbjct: 338 ADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQE 397

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPI 414
            +MD   + L  M  +      D+  +   L    K+ +   A+++  +L  KG S V I
Sbjct: 398 KKMDRAIEYLEIM--VSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLI 455

Query: 415 -YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            YN ++  L ++G+ + A  L  +MR   L+ + +++S  ++     G + EA +  + +
Sbjct: 456 TYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDM 515

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTI 525
             +S  PS   YN +  GLCK  +   A+     M+ + C       PT+  Y + I
Sbjct: 516 EGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGC------KPTKATYTILI 566



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 172/386 (44%), Gaps = 9/386 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G I + L++LE+M      PDV  Y  ++R L     L   + V +   +     DV+ 
Sbjct: 190 SGEIDKALQVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVIT 246

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI   C    V +  +L  EM++ G   D   Y VLI G+  EG++ +A   L ++ 
Sbjct: 247 YTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMP 306

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G + ++  +N I+  +C   ++  A +L    ++   +P   T N L+        + 
Sbjct: 307 LYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLG 366

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
               +L +M   K     +   +   L G  +E+++  A++  E +  +G Y  +  YN 
Sbjct: 367 RAIDVLEKMP--KHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNT 424

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+ AL + G+   A+ +  ++         ++++  I    + G    A E   ++    
Sbjct: 425 LLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKG 484

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P +  Y+ L +GL   G++D A+ +  D  G ++  P+   Y   +L +C++ +  + 
Sbjct: 485 LKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEG-LSIKPSAVTYNAIMLGLCKAQQTSRA 543

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGM 563
           I+ L  M ++GC P +   + +I G+
Sbjct: 544 IDFLAYMVEKGCKPTKATYTILIEGI 569



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 172/392 (43%), Gaps = 54/392 (13%)

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           L + G +  G +    M   G + D      LI G    GK  KA  +++ L +SG   D
Sbjct: 117 LVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPD 176

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL- 366
           +  YN +IGG C+  + DKA ++ E   +  +APD  T N +L    + G++    ++L 
Sbjct: 177 VITYNVLIGGYCKSGEIDKALQVLE---RMSVAPDVVTYNTILRSLCDSGKLKEAMEVLD 233

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEI 425
            QM++  +          E     +  +  A+ + +E++ KG    V  YN+L+  + + 
Sbjct: 234 RQMQRECYPDVITYTILIEATC-NDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKE 292

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA-----------CE------ 468
           G + +A+     M     + N ++ +I ++    +G  ++A           C       
Sbjct: 293 GRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTF 352

Query: 469 -------CHNKII-----------EMSQVPSVAAYNCLTKGLCKIGEIDAA-----MMLV 505
                  C  +++           +   +P+  +YN L  G C+  ++D A     +M+ 
Sbjct: 353 NILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVS 412

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
           R C  ++ +      Y   +  +C+ G+A+  +E+LN+++ +GC P  +  + +I G+ K
Sbjct: 413 RGCYPDIVT------YNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTK 466

Query: 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            G  E A ++   +R + L  + + I Y  +L
Sbjct: 467 VGKTEYAAELLEEMRRKGL--KPDIITYSTLL 496



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 115/273 (42%), Gaps = 8/273 (2%)

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYT 207
           + +N   Y      ++ N + R+       MD++  +A+ML       R  C P V  + 
Sbjct: 301 FLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADML-------RKGCSPSVVTFN 353

Query: 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
            +I  L  +R L   + V E+M K     + ++Y  L+ G C+  ++ R  E    M   
Sbjct: 354 ILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSR 413

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           G   D   Y  L+  L  +GK   A ++L  L   G    L  YN++I GL +V + + A
Sbjct: 414 GCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYA 473

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
            +L E   +  L PD  T + LL      G++D   K+   ME L    +A         
Sbjct: 474 AELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLG 533

Query: 388 VGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
           + K ++   A+D    +  KG   +   Y IL+
Sbjct: 534 LCKAQQTSRAIDFLAYMVEKGCKPTKATYTILI 566


>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
 gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 109/446 (24%), Positives = 189/446 (42%), Gaps = 11/446 (2%)

Query: 150 HNFASYNALAYCLSRNNLFRAADQVPELMDSQ---------GRIAEMLEILEKMRRNLCK 200
           HN     +L       ++    +Q+P    S          GRI     +L+ M  +   
Sbjct: 30  HNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVLKTMVMSGLV 89

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PDV  Y  M+      R L + + + E+M       DV+ Y T+I  L   G+  +  E 
Sbjct: 90  PDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFDQAVEF 149

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           +R     G L     Y +LIE +       +A ++L+D+   G   DL  YNS++    +
Sbjct: 150 WRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLEDMAIEGCYPDLVTYNSLVNFASK 209

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             +++ A  +    +   + P+  T N LL      G  D   ++LA M+K         
Sbjct: 210 EGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVT 269

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
                  + K   +  A++ F ++  +  S  +  YN L+ AL + G V +AL +F  + 
Sbjct: 270 YNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLS 329

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
             N     ++++  I      G + EA + +N++IE    P    +  L  G C I +++
Sbjct: 330 DSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVE 389

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            A+ ++R+ +G          Y L I  +CR+   +  I+VL  M      P+E I S +
Sbjct: 390 DAVEILRE-MGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPDEEIYSTL 448

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLL 585
           I  +   G +EEA ++   L ERK+L
Sbjct: 449 IKSVADAGMVEEADELHQKLIERKVL 474



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 161/365 (44%), Gaps = 14/365 (3%)

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
           LVE D      ++  LCK G ++   +L   M     + +      LI GLV  G++ +A
Sbjct: 17  LVENDEETNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERA 76

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
             +LK +V SG   D+  YN ++GG C+ +Q   A  L E        PD  T N ++  
Sbjct: 77  SRVLKTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRS 136

Query: 353 CAEMGRMDNFFKLL-AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YS 410
             + G+ D   +    Q+ +             E LV K    + AL+V E++  +G Y 
Sbjct: 137 LFDNGKFDQAVEFWRGQLRRGCLPYLIPYTILIE-LVWKHCGTVRALEVLEDMAIEGCYP 195

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            +  YN L+    + G+ + A  +   +    +E N+++++  +      G   E  E  
Sbjct: 196 DLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEIL 255

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTI 525
             + + S  P+V  YN L  GLCK G ++ A+     M+  +C       P    Y   +
Sbjct: 256 AIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENC------SPDIITYNTLL 309

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
             +C+ G  ++ ++V   ++   C P  +  + +I G+ + G ++EA K++  + E+ + 
Sbjct: 310 TALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIA 369

Query: 586 TEANT 590
            +  T
Sbjct: 370 PDGIT 374



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 100/233 (42%), Gaps = 19/233 (8%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ-------------------GRIAEM 187
           G + N  +YN+L + L    L+   D++  +M                      G +   
Sbjct: 227 GMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVERA 286

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           +    +M    C PD+  Y  ++  L  E  +D  L+V+  +        ++ Y T+I G
Sbjct: 287 INFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDG 346

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           L + G +    +L+ +M E GI  D   +  L+ G     +V  A ++L+++    +R +
Sbjct: 347 LTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDAVEILREMGKRDHRIN 406

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
              Y  +I GLCR K+ D A ++ E+ +     PD    + L+   A+ G ++
Sbjct: 407 SSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPDEEIYSTLIKSVADAGMVE 459


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 189/442 (42%), Gaps = 69/442 (15%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G  HN  S N L  CL R N                 +   + +L KM +   +PD   +
Sbjct: 122 GVTHNVYSLNILINCLCRLN----------------HVVFAISVLGKMFKLGIQPDAITF 165

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
             +I     E  +   + ++ EM +   + DV++Y T+I GLCK G      +L R+M+E
Sbjct: 166 NTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEE 225

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
            G   +   Y  +I+ L  +  V  A DLL ++VD G   D+  Y++I+ G C +   ++
Sbjct: 226 KGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNE 285

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           A  LF   V  ++ P+  T                            F++  D       
Sbjct: 286 ATILFNEMVGRNVMPNTVT----------------------------FTILVD------- 310

Query: 387 LVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALL---EIGEVKKALYLFGKMRGLN 442
            + KE  +  A  VFE +  KG   +   YN LM       ++ E +K L +    +G  
Sbjct: 311 GLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVD-KGCA 369

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ---VPSVAAYNCLTKGLCKIGEID 499
             V+S +  I   C     D     E  + ++EMS+    P    Y+ L +GLC++G   
Sbjct: 370 PVVHSYNILINGYCKRRRLD-----EAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQ 424

Query: 500 AAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
            A+ L ++     +SG  P    Y+  +  +C+ G  ++ +++L  M +    P+ V+ +
Sbjct: 425 EALNLFKEM---CSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYN 481

Query: 558 AIISGMCKHGTLEEARKVFTNL 579
            +I GM   G LE A+++F+ L
Sbjct: 482 ILIEGMFIAGKLEVAKELFSKL 503



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 172/367 (46%), Gaps = 6/367 (1%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            G  +  L++L KM    CKP++ AYT +I  L  +  ++  + +  EM    +  DV+ 
Sbjct: 210 SGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVT 269

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y T++ G C  G +     LF EM    ++ +   + +L++GL  EG V +A  + + + 
Sbjct: 270 YSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMT 329

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   +   YN+++ G C   Q D+A K+ ++ V    AP   + N L+    +  R+D
Sbjct: 330 KKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLD 389

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNI 417
               LL +M + + +   D   +   + G  +  R   AL++F+E+   G    +  Y+ 
Sbjct: 390 EAKSLLVEMSEKELT--PDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYST 447

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+  L + G + +AL L   M+   +E + + ++I I+    +G +  A E  +K+    
Sbjct: 448 LLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADG 507

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
             P++  Y  + KGL K G  D A  L R  + +    P    Y + I    ++ ++   
Sbjct: 508 IQPTIRTYTIMIKGLLKEGLSDEAYELFRK-MEDDGFLPNSCSYNVIIQGFLQNQDSSTA 566

Query: 538 IEVLNEM 544
           I +++EM
Sbjct: 567 IRLIDEM 573



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 194/421 (46%), Gaps = 9/421 (2%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           I + L    +M R   +P V  +   +  +A ++     + +  +M    V  +V +   
Sbjct: 73  IDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNI 132

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           LI  LC+   VV    +  +M + GI  D   +  LI G   EG++ +A  L  ++V  G
Sbjct: 133 LINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRG 192

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
           ++ D+  Y+++I GLC+      A +L     +    P+      ++    +   +++  
Sbjct: 193 HQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAM 252

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMG 420
            LL++M  +   +  D+  +   L G      +  A  +F E+ G+    +   + IL+ 
Sbjct: 253 DLLSEM--VDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVD 310

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L + G V +A  +F  M     E N+ +++  +  +  +  + EA +  + +++    P
Sbjct: 311 GLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAP 370

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V +YN L  G CK   +D A  L+ + +      P    Y+  +  +C+ G  ++ + +
Sbjct: 371 VVHSYNILINGYCKRRRLDEAKSLLVE-MSEKELTPDTVTYSTLMQGLCQVGRPQEALNL 429

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600
             EM   G  P+ +  S ++ G+CKHG L+EA K+  +++E K+  E + ++Y+ ILIE 
Sbjct: 430 FKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKI--EPDIVLYN-ILIEG 486

Query: 601 M 601
           M
Sbjct: 487 M 487



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 125/277 (45%), Gaps = 30/277 (10%)

Query: 142 AGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLC 199
           A  +KG + N  +YNAL   YCL  NN    A +V ++M  +G                C
Sbjct: 327 AMTKKGAEPNAYTYNALMDGYCL--NNQMDEAQKVLDIMVDKG----------------C 368

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
            P V +Y  +I      R LD    +  EM +  +  D + Y TL+ GLC+ GR      
Sbjct: 369 APVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALN 428

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           LF+EM  +G+L D   Y  L++GL   G + +A  LLK + +S    D+ +YN +I G+ 
Sbjct: 429 LFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMF 488

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF----- 374
              + + A +LF     D + P   T   ++    + G  D  ++L  +ME   F     
Sbjct: 489 IAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSC 548

Query: 375 SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS 411
           S    ++ F +      +    A+ + +E+ GK +S+
Sbjct: 549 SYNVIIQGFLQ-----NQDSSTAIRLIDEMVGKRFSA 580


>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 932

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 98/434 (22%), Positives = 188/434 (43%), Gaps = 41/434 (9%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + E L  + KM+    +  +  Y+ ++   A   N DA    +EE K+ L   + + Y  
Sbjct: 335 MEEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGG 394

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG--LVGE--------------- 286
           +I   C+   + R   L REM+E GI     IY  +++G  ++G                
Sbjct: 395 IIYAHCQICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECG 454

Query: 287 ------------------GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328
                             GKV KA ++ K +  SG + ++  Y+ +I G  ++K +  A+
Sbjct: 455 FFPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAF 514

Query: 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388
            +FE   +D L PD    N ++     MG MD    ++ QM+K +         F   + 
Sbjct: 515 SVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTT--RTFLPIIH 572

Query: 389 G--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445
           G  +   +  AL++F+ ++  G   +V  YN L+  L+E  ++ KA+ +  +M    +  
Sbjct: 573 GFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGP 632

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N  +++  +Q +   GD  +A +    +        V  Y  L K  CK G + +A+ + 
Sbjct: 633 NEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVT 692

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
           ++         T F Y + I    R G+  +  +++ +M +EG  P+    ++ I+  CK
Sbjct: 693 KEMSAKNIPRNT-FVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCK 751

Query: 566 HGTLEEARKVFTNL 579
            G +++A ++   +
Sbjct: 752 AGDMQKATEIIQEM 765



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/428 (21%), Positives = 184/428 (42%), Gaps = 11/428 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G +    +  E MR    +P    Y+++I   A  R+++  L    +MK++ +E  ++ 
Sbjct: 297 RGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMKEEGIEMTIVT 356

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  ++ G  K G        F E KE    ++  IYG +I        + +A  L++++ 
Sbjct: 357 YSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQICNMDRAEALVREME 416

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G  A + IY++++ G   +   +K   +F+   +    P   +   L+    ++G++ 
Sbjct: 417 EQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFFPSVISYGCLINLYTKVGKVS 476

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYN 416
              K L   + +K S      K +  L+    K +    A  VFE+    G    V +YN
Sbjct: 477 ---KALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYN 533

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
            ++ A   +G + +A+ +  +M+       + +F   I     +G++  A E  + +   
Sbjct: 534 NIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRS 593

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
             +P+V  YN L  GL +  ++  A+ ++ D +     GP E  Y   +      G+ EK
Sbjct: 594 GCIPTVHTYNALILGLVEKRQMTKAVAIL-DEMNVAGVGPNEHTYTTLMQGYASLGDTEK 652

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596
             +    +  EG   +     A++   CK G ++ A  V   +  + +    NT VY+ I
Sbjct: 653 AFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNI--PRNTFVYN-I 709

Query: 597 LIEHMKKK 604
           LI+   ++
Sbjct: 710 LIDGWARR 717



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 143/350 (40%), Gaps = 17/350 (4%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           K  G KHN  +Y+ L      N   +  D            A    + E   ++  KPDV
Sbjct: 486 KMSGIKHNMKTYSMLI-----NGFLKLKDW-----------ANAFSVFEDFTKDGLKPDV 529

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             Y  +I       N+D  + +  +M+K+        ++ +I G  + G + R  E+F  
Sbjct: 530 VLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRALEIFDM 589

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           M+ +G +     Y  LI GLV + ++ KA  +L ++  +G   +   Y +++ G   +  
Sbjct: 590 MRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYASLGD 649

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            +KA++ F V   + L  D  T   LL  C + GRM +   +  +M          +   
Sbjct: 650 TEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNI 709

Query: 384 FEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
                 +   +  A D+ ++++ +G    +  Y   + A  + G+++KA  +  +M    
Sbjct: 710 LIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEASG 769

Query: 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
           ++ N  +++  I     +    +A  C  ++      P  A Y+CL   L
Sbjct: 770 IKPNLKTYTTLINGWARASMPEKALSCFEEMKLAGFKPDKAVYHCLVTSL 819



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 109/245 (44%), Gaps = 5/245 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +   LEI + MRR+ C P V  Y A+I  L  +R +   + + +EM    V  +   Y
Sbjct: 578 GEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTY 637

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+ G    G   +  + F  ++  G+ ID   Y  L++     G++  A  + K++  
Sbjct: 638 TTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSA 697

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
                +  +YN +I G  R     +A  L +   ++ L PD  T    +  C + G M  
Sbjct: 698 KNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQK 757

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM--MALDVFEELKGKGYS-SVPIYNIL 418
             +++ +ME     +  +L+ +   + G     M   AL  FEE+K  G+     +Y+ L
Sbjct: 758 ATEIIQEMEAS--GIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAGFKPDKAVYHCL 815

Query: 419 MGALL 423
           + +LL
Sbjct: 816 VTSLL 820



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/381 (20%), Positives = 148/381 (38%), Gaps = 37/381 (9%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           KP    Y  M++      ++    + +E M+   +E     Y +LI     G  +     
Sbjct: 281 KPARKEYGLMVKYYGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALH 340

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
             R+MKE GI +    Y +++ G    G    A    ++  +     +  IY  II   C
Sbjct: 341 CVRKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHC 400

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           ++   D+A  L     +  +       + +         MD +                 
Sbjct: 401 QICNMDRAEALVREMEEQGIDAPIDIYHTM---------MDGY----------------- 434

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM 438
                  ++G EE+ ++   VF+ LK  G + SV  Y  L+    ++G+V KAL +   M
Sbjct: 435 ------TMIGNEEKCLI---VFDRLKECGFFPSVISYGCLINLYTKVGKVSKALEISKMM 485

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
           +   ++ N  ++S+ I   ++  D   A        +    P V  YN +    C +G +
Sbjct: 486 KMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNM 545

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D A+ +VR  +      PT   +   I    R+GE  + +E+ + M + GC P     +A
Sbjct: 546 DRAICMVRQ-MQKERHRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNA 604

Query: 559 IISGMCKHGTLEEARKVFTNL 579
           +I G+ +   + +A  +   +
Sbjct: 605 LILGLVEKRQMTKAVAILDEM 625



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 68/147 (46%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+   L + ++M       + F Y  +I   A   ++     + ++M+K+ +  D+  Y
Sbjct: 683 GRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTY 742

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            + I   CK G + +  E+ +EM+ +GI  +   Y  LI G        KA    +++  
Sbjct: 743 TSFINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWARASMPEKALSCFEEMKL 802

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAY 328
           +G++ D  +Y+ ++  L     F ++Y
Sbjct: 803 AGFKPDKAVYHCLVTSLLSRATFAQSY 829



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/177 (20%), Positives = 81/177 (45%), Gaps = 9/177 (5%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + E  +++++MR+    PD+  YT+ I       ++     + +EM+   ++ ++  
Sbjct: 717 RGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNLKT 776

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA------CD 294
           Y TLI G  +     +    F EMK  G   D+A+Y  L+  L+      ++        
Sbjct: 777 YTTLINGWARASMPEKALSCFEEMKLAGFKPDKAVYHCLVTSLLSRATFAQSYVYSGLLS 836

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351
           + +++++S    D+G   ++    C +++ ++        +Q    PD+++ N L V
Sbjct: 837 VCREMIESEMIVDMG--TAVHWSRC-LRKIERTGGELTEALQKTFPPDWTSHNVLDV 890


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 117/542 (21%), Positives = 225/542 (41%), Gaps = 78/542 (14%)

Query: 114 LRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQ 173
           L  +TP  + ++L++  +   +   F  AG Q+GY H+F  Y  L   L     F+  D+
Sbjct: 56  LNPITPSQLCKLLELPLDVPTSMDLFEKAGLQRGYIHSFHVYYLLIDKLGNVGEFKMIDK 115

Query: 174 VPELMDSQGRI-------------------AEMLEILEKMRRNLC-KPDVFAYTAMIRVL 213
           + + M  +G +                    +   +L  M    C +P   +Y  ++ +L
Sbjct: 116 LLKQMKDEGCVFKESLFILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTFKSYNVVLEIL 175

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
            A         V+ +M    +   V  +  ++   C    V     L R+M ++G + + 
Sbjct: 176 VAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNS 235

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
            IY +LI  L    +V +A  LL+++   G   D+  +N +I GLC+  +  +A KL + 
Sbjct: 236 IIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDR 295

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER 393
            +  D   D      L+     MG++D                              E R
Sbjct: 296 MLLRDFTADALIQGYLMHGLCRMGKVD------------------------------EAR 325

Query: 394 IMMALDVFEELKGKGYSSVP-----IYNILMGALLEIGEVKKAL-YLFGKMRGLNLEVNS 447
            M+             S +P     +YN L+   +  G  ++A   L+  M     E ++
Sbjct: 326 AML-------------SKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDA 372

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
            +F+I I    + G ++ A E  +++++    P+V  Y  L  G CK G  + A  +V  
Sbjct: 373 FTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNS 432

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
                 S  T   Y   I  +C+ G+ +  +++  EM+ +GC P+    +++I G+CK+ 
Sbjct: 433 MSAKGLSLNT-VGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKND 491

Query: 568 TLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGC 627
            +EEA  ++ ++    ++  ANT+ Y+ ++   ++    +L+    K  G   +++ +GC
Sbjct: 492 KMEEALGLYRDMLLEGVI--ANTVTYNTLIHAFLR---LELIQQADKLVG---EMRFRGC 543

Query: 628 KL 629
            L
Sbjct: 544 PL 545



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/445 (24%), Positives = 198/445 (44%), Gaps = 37/445 (8%)

Query: 155 YNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA 214
           Y  L + LS NN                R+ E +++LE+M    C+PDV  +  +I  L 
Sbjct: 238 YQMLIHALSENN----------------RVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLC 281

Query: 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA 274
               +    ++ + M      AD +    L+ GLC+ G+V     +  ++       +  
Sbjct: 282 KAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPNP----NTV 337

Query: 275 IYGVLIEGLVGEGKVGKACDLL-KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
           +Y  LI G V  G+  +A DLL K++V +G+  D   +N +I GLC+      A +  + 
Sbjct: 338 LYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDE 397

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG---K 390
            V+    P+  T   L+    + G  +   K++  M     S+       +  L+G   K
Sbjct: 398 MVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNT---VGYNCLIGALCK 454

Query: 391 EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449
           + +I  AL ++ E+  KG    +  +N L+  L +  ++++AL L+  M    +  N+++
Sbjct: 455 DGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVT 514

Query: 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPSV----AAYNCLTKGLCKIGEIDAAMMLV 505
           ++  I   +     LE  +  +K++   +          YN L K LCK G  +  + L+
Sbjct: 515 YNTLIHAFLR----LELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLI 570

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
               G     P+     + I   CR+G+    ++ L +M Q G  P+ V  +++I+G+CK
Sbjct: 571 EQMFGEEIF-PSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCK 629

Query: 566 HGTLEEARKVFTNLRERKLLTEANT 590
            G  +EA  +F  L+ + +  +A T
Sbjct: 630 MGRFQEALNLFNGLQAKGIHPDAVT 654



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 166/395 (42%), Gaps = 42/395 (10%)

Query: 181 QGRIAEMLEILEK-MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
            GR  E  ++L K M     +PD F +  MI  L  +  L + L   +EM K   E +V+
Sbjct: 349 SGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVI 408

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y  LI G CK G      ++   M   G+ ++   Y  LI  L  +GK+  A  +  ++
Sbjct: 409 TYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEM 468

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
              G + D+  +NS+I GLC+  + ++A  L+   + + +  +  T N L+     +   
Sbjct: 469 SSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRL--- 525

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNIL 418
               +L+ Q +K               LVG             E++ +G     I YN L
Sbjct: 526 ----ELIQQADK---------------LVG-------------EMRFRGCPLDNITYNGL 553

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + AL + G  +K L L  +M G  +  +  S +I I     +G + +A +    +I+   
Sbjct: 554 IKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGL 613

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEK 536
            P +  YN L  GLCK+G    A+ L     G  A G  P    Y   I   C  G    
Sbjct: 614 TPDIVTYNSLINGLCKMGRFQEALNLFN---GLQAKGIHPDAVTYNTLISRYCYEGLFND 670

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
             ++L +    G  PNE+  S +I+   K+ +  E
Sbjct: 671 ACQLLFKGVSNGFIPNEITWSILINYFVKNNSDSE 705



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 106/260 (40%), Gaps = 54/260 (20%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIA 185
           +KG++ N  +Y  L     +   F  A +V   M ++G                   +I 
Sbjct: 400 KKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQ 459

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           + L++  +M    CKPD++ + ++I  L     ++  L ++ +M  + V A+ + Y TLI
Sbjct: 460 DALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLI 519

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYG----------------VLIEGLVGE--- 286
               +   + +  +L  EM+  G  +D   Y                  LIE + GE   
Sbjct: 520 HAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIF 579

Query: 287 ----------------GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
                           GKV  A   L+D++  G   D+  YNS+I GLC++ +F +A  L
Sbjct: 580 PSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNL 639

Query: 331 FEVTVQDDLAPDFSTVNPLL 350
           F       + PD  T N L+
Sbjct: 640 FNGLQAKGIHPDAVTYNTLI 659


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 164/345 (47%), Gaps = 14/345 (4%)

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
           +++GVLI   +   +VG   + L+  +  G    +   N+++ GL +   FD  ++L+  
Sbjct: 120 SVFGVLI---IAFSEVGLVDEALRVYLKVGAFPAVQACNALLNGLLKKSSFDIMWELYNN 176

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER 393
            V   L P   T N L+  C   G +     L+++M K        +       +  E +
Sbjct: 177 MVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSESK 236

Query: 394 IMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           +M A  +F ++K  G + ++  YN+LM    +   VK+AL+L+  M    L+ N ++F I
Sbjct: 237 LMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGI 296

Query: 453 AIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512
            I    +  ++L A     ++ +   VP+V  +N L  G  K G    A  L+ + +   
Sbjct: 297 LIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLE-MEKF 355

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE-- 570
              P  F Y++ I + CR G  E+  ++L  M +EG P N V+ +++I G CK G +E  
Sbjct: 356 KISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKA 415

Query: 571 ----EARKVFTNLRERKLLTEANTIVYDEILIEHMK-KKTADLVL 610
               +A K F+++R   L  +A  + Y  +L  H+  K  AD+++
Sbjct: 416 LEIFKATKFFSDMRRNGLRPDA--LAYAVMLQGHLNAKHMADVMM 458



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 99/424 (23%), Positives = 187/424 (44%), Gaps = 39/424 (9%)

Query: 115 RRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV 174
           R +T DL+  +L+      + S  F+   + +G K N + +  L    S   L   A +V
Sbjct: 82  RCLTKDLIQTLLQSCTPRRVNSLVFNALSQLRGSKFNPSVFGVLIIAFSEVGLVDEALRV 141

Query: 175 -------PELMDSQGRIAEML-----EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
                  P +      +  +L     +I+ ++  N+    +F       VL     +DAC
Sbjct: 142 YLKVGAFPAVQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVL-----VDAC 196

Query: 223 LR---------VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
            R         +  EM K  +E  V+ Y TLI GLC   +++    +FR+MK++G+  + 
Sbjct: 197 CRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNL 256

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             Y VL++G      V +A  L + ++D G + ++  +  +I  LC+V++   A + F  
Sbjct: 257 YTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQ 316

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER 393
             +  + P+    N L+   ++ G       LL +ME  KF ++ D+   +  L+    R
Sbjct: 317 MAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEME--KFKISPDVFT-YSILIKNACR 373

Query: 394 IMMALDVFEELKGKGYSSVP----IYNILMGALLEIGEVKKALYL------FGKMRGLNL 443
           +    +  + LK      VP    +YN L+    + G ++KAL +      F  MR   L
Sbjct: 374 LGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGL 433

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
             ++L++++ +Q H+ +  + +    H  +I+M  VP+      + +G    G + +A+ 
Sbjct: 434 RPDALAYAVMLQGHLNAKHMADVMMLHADMIKMGIVPNEVTSQVVRRGYQDNGYLKSALW 493

Query: 504 LVRD 507
             RD
Sbjct: 494 CSRD 497


>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 8/388 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR    ++ L  M R+  +P V  +T ++  L  E N+    ++++ ++   +  +   Y
Sbjct: 296 GRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIY 355

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            TL+ G  K   V +   L+ EM+  G+  D   + +L+ G    G++  +  LLKDL+ 
Sbjct: 356 NTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIV 415

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           SG   D  +Y+ ++  LC   + D+A KL +  ++  L       N L+   +  G  D 
Sbjct: 416 SGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDK 475

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI----YNI 417
            F+    M +  F+ ++         + ++  +  A  +   +  KG+   PI    Y +
Sbjct: 476 AFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGF---PINKVAYTV 532

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+    ++  ++ A +L+ +M+   +  ++++F+  I    ++G++ EA E   ++  + 
Sbjct: 533 LLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIG 592

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKI 537
            VP+  AYN L +GLC  G +  A+ L ++         T F + + I   CR G+ +  
Sbjct: 593 FVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDT-FTFNIIIDGFCRRGQMKFA 651

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCK 565
           IE   +M + G  P+    + +I G CK
Sbjct: 652 IETFLDMQRIGLLPDIFTFNILIGGYCK 679



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/423 (21%), Positives = 194/423 (45%), Gaps = 14/423 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + E  ++ + ++     P+   Y  ++      R +     ++EEM+   V  D + 
Sbjct: 330 EGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVT 389

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  L+ G  K GR+     L +++  +G+ +D ++Y V++  L   G++ +A  LL++L+
Sbjct: 390 FNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELL 449

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G    +  +NS+IG   R    DKA++ + + V+    P  ST N LL+     G + 
Sbjct: 450 EKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQ 509

Query: 361 NFFKLLAQMEKLKFSV-----AADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPI 414
               LL +M +  F +        L+ +F     K   +  A  +++E+K +G Y     
Sbjct: 510 EARILLYRMLEKGFPINKVAYTVLLDGYF-----KMNNLEGAQFLWKEMKERGIYPDAVA 564

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           +  L+  L + G V++A  +F +M  +    N+ +++  I+   + G + EA +   ++ 
Sbjct: 565 FTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMR 624

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           +   +     +N +  G C+ G++  A+    D +  +   P  F + + I   C++ + 
Sbjct: 625 QKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLD-MQRIGLLPDIFTFNILIGGYCKAFDM 683

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
               E++N+M   G  P+    +  + G C+   + +A  +   L    ++ +  T+ Y+
Sbjct: 684 VGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAGIVPD--TVTYN 741

Query: 595 EIL 597
            +L
Sbjct: 742 TML 744



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 184/417 (44%), Gaps = 14/417 (3%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q R+     +L  M + +C PDV  +  +I            +     M +  VE  V  
Sbjct: 260 QHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWVAIDWLHLMVRSGVEPSVAT 319

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           + T++  LC+ G VV   +LF  +++ GI  + AIY  L++G     +V +A  L +++ 
Sbjct: 320 FTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMR 379

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +G   D   +N ++ G  +  + + + +L +  +   L  D S  + ++      GR+D
Sbjct: 380 TTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRLD 439

Query: 361 NFFKLLAQM--EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELK-----GKGYSSVP 413
              KLL ++  + L  SV A     F  L+G   R  +    FE  +     G   SS  
Sbjct: 440 EAMKLLQELLEKGLTLSVVA-----FNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPSSST 494

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
             ++LMG L   G +++A  L  +M      +N +++++ +  + +  ++  A     ++
Sbjct: 495 CNSLLMG-LCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEM 553

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
            E    P   A+  L  GL K G ++ A  +  + +  +   P  F Y   I  +C  G 
Sbjct: 554 KERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLE-MSAIGFVPNNFAYNSLIRGLCDCGR 612

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             + +++  EM Q+G   +    + II G C+ G ++ A + F +++   LL +  T
Sbjct: 613 VTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFT 669



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 169/392 (43%), Gaps = 2/392 (0%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           +P    + AMI     +  +     +   M K +   DV+ +  LI   C GGR     +
Sbjct: 244 RPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWVAID 303

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
               M  +G+    A +  ++  L  EG V +A  L   + D G   +  IYN+++ G  
Sbjct: 304 WLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYF 363

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           + ++  +A  L+E      ++PD  T N L+    + GR+++  +LL  +      + + 
Sbjct: 364 KAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSS 423

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
           L       +    R+  A+ + +EL  KG + SV  +N L+GA    G   KA   +  M
Sbjct: 424 LYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIM 483

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
                  +S + +  +      G + EA     +++E     +  AY  L  G  K+  +
Sbjct: 484 VRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNL 543

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           + A  L ++ +      P    +   I  + ++G  E+  EV  EM+  G  PN    ++
Sbjct: 544 EGAQFLWKE-MKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNS 602

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +I G+C  G + EA K+   +R++ LL++  T
Sbjct: 603 LIRGLCDCGRVTEALKLEKEMRQKGLLSDTFT 634



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 169/394 (42%), Gaps = 16/394 (4%)

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292
           + E+D     TL+ G    G      E+ R M+  G+    +   +L+  L+  G  G  
Sbjct: 172 MYESDFSVLNTLLRGFLNVGMGFEALEVLRMMRGVGVRPGLSSITILLRLLLRIGDYGSV 231

Query: 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352
             L KD++  G R     +N++I G CR  +      L  +  +   +PD  T N L+  
Sbjct: 232 WKLFKDMIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINA 291

Query: 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKGYS 410
           C   GR       L  M  ++  V   +  F   L  + +E  ++ A  +F+ ++  G +
Sbjct: 292 CCIGGRTWVAIDWLHLM--VRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIA 349

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
            +  IYN LM    +  EV +A  L+ +MR   +  + ++F+I +  H + G I ++   
Sbjct: 350 PNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRL 409

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL--H 527
              +I        + Y+ +   LC  G +D AM L+++ L     G T    A   L   
Sbjct: 410 LKDLIVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELL---EKGLTLSVVAFNSLIGA 466

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
             R+G  +K  E    M + G  P+   C++++ G+C+ G L+EAR +   + E+     
Sbjct: 467 YSRAGLEDKAFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGF--P 524

Query: 588 ANTIVYDEILIEHMKKKTADLVLSGLKFFGLESK 621
            N + Y  +L  + K       L G +F   E K
Sbjct: 525 INKVAYTVLLDGYFKMNN----LEGAQFLWKEMK 554



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 93/425 (21%), Positives = 181/425 (42%), Gaps = 47/425 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GR+ E +++L+++        V A+ ++I   +     D     +  M +          
Sbjct: 436 GRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTC 495

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +L+MGLC+ G +     L   M E G  I++  Y VL++G      +  A  L K++ +
Sbjct: 496 NSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKE 555

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   D   + ++I GL +    ++AY++F         P+    N L+    + GR+  
Sbjct: 556 RGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVT- 614

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMG 420
                   E LK      LEK                    E++ KG  S    +NI++ 
Sbjct: 615 --------EALK------LEK--------------------EMRQKGLLSDTFTFNIIID 640

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
                G++K A+  F  M+ + L  +  +F+I I  + ++ D++ A E  NK+      P
Sbjct: 641 GFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDP 700

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            +  YN    G C++ +++ A++++ D L +    P    Y   +  +C S   ++ + +
Sbjct: 701 DITTYNTYMHGYCRMRKMNQAVIIL-DQLISAGIVPDTVTYNTMLSGIC-SDILDRAMIL 758

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE---------RKLLTEANTI 591
             ++ + G  PN +  + ++S  CK G  E+A      LRE          ++L +A  +
Sbjct: 759 TAKLLKMGFIPNVITTNMLLSHFCKQGMPEKALIWGQKLREISFGFDEISYRILDQAYCL 818

Query: 592 VYDEI 596
           + D++
Sbjct: 819 MQDDV 823



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 129/278 (46%), Gaps = 4/278 (1%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           + ++M+     PD  A+TA+I  L+   N++    V+ EM       +  AY +LI GLC
Sbjct: 549 LWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLC 608

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
             GRV    +L +EM++ G+L D   + ++I+G    G++  A +   D+   G   D+ 
Sbjct: 609 DCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIF 668

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            +N +IGG C+      A ++        L PD +T N  +     M +M+    +L Q+
Sbjct: 669 TFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQL 728

Query: 370 EKLKFSVAADLEKFFEFLVGKEERIM-MALDVFEELKGKGY-SSVPIYNILMGALLEIGE 427
             +   +  D   +   L G    I+  A+ +  +L   G+  +V   N+L+    + G 
Sbjct: 729 --ISAGIVPDTVTYNTMLSGICSDILDRAMILTAKLLKMGFIPNVITTNMLLSHFCKQGM 786

Query: 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            +KAL    K+R ++   + +S+ I  Q +    D +E
Sbjct: 787 PEKALIWGQKLREISFGFDEISYRILDQAYCLMQDDVE 824



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 98/198 (49%), Gaps = 3/198 (1%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +   G + E  E+  +M      P+ FAY ++IR L     +   L++ +EM++  + +D
Sbjct: 572 LSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSD 631

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
              +  +I G C+ G++    E F +M+  G+L D   + +LI G      +  A +++ 
Sbjct: 632 TFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVN 691

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV-CCAEM 356
            +   G   D+  YN+ + G CR+++ ++A  + +  +   + PD  T N +L   C+++
Sbjct: 692 KMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAGIVPDTVTYNTMLSGICSDI 751

Query: 357 GRMDNFFKLLAQMEKLKF 374
             +D    L A++ K+ F
Sbjct: 752 --LDRAMILTAKLLKMGF 767


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 112/482 (23%), Positives = 226/482 (46%), Gaps = 16/482 (3%)

Query: 111 LSKLRRV-TPDLVAEVLK-VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLF 168
           +SKL  V + D+V  VL+ +  NPT +  FF +  KQ+ ++ N  SY  L + LSR  ++
Sbjct: 25  ISKLNFVFSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVHILSRGRMY 84

Query: 169 RAA----DQVPELMDSQGRIAEMLEILEKMRRNLC-KPDVFAYTAMIRVLAAERNLDA-C 222
                  +Q+ +L   + R   + + L  + R     P VF    MI  +  E+ L    
Sbjct: 85  DETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFD---MILKVYVEKGLTKNA 141

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
           L V++ M K      + +  +L+  L K G     H ++++M   GI+ D  +  +++  
Sbjct: 142 LYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNA 201

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
              +GKV +A   +K + + G   ++  Y+S+I G   +   + A  + +   +  ++ +
Sbjct: 202 FCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRN 261

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDV 400
             T   L+    +  +MD   K+L  M++ + ++  D   +   + G  +  +I  A+ +
Sbjct: 262 VVTYTLLIKGYCKQCKMDEAEKVLRGMQE-EAALVPDERAYGVLIDGYCRTGKIDDAVRL 320

Query: 401 FEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
            +E+   G  +++ I N L+    + GE+ +A  +  +M   NL+ +S S++  +  +  
Sbjct: 321 LDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCR 380

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
            G   EA    +K+++    P+V  YN L KGLC++G  D A+  +   +      P E 
Sbjct: 381 EGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQ-IWHLMMKRGVAPDEV 439

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            Y+  +  + +    E    +  ++   G   + +  + +ISG+CK G + EA ++F  +
Sbjct: 440 GYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKM 499

Query: 580 RE 581
           ++
Sbjct: 500 KD 501



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/491 (22%), Positives = 204/491 (41%), Gaps = 48/491 (9%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I E   ++ +M     KPD ++Y  ++     E +      + ++M ++ +E  V+ 
Sbjct: 346 RGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLT 405

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TL+ GLC+ G      +++  M + G+  D   Y  L++GL        A  L KD++
Sbjct: 406 YNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDIL 465

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G+      +N++I GLC++ +  +A ++F+       +PD  T   L+    +   + 
Sbjct: 466 ARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVG 525

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILM 419
             FK+   ME+   S + ++       + K  R++   D+  E+  +G + ++  Y  L+
Sbjct: 526 QAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALI 585

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS-- 477
               + G + KA   + +M    L  N +  S  +      G I EA     K+++    
Sbjct: 586 DGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFF 645

Query: 478 ------------------------------QVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
                                          +P+   YN    GLCK G++D A      
Sbjct: 646 PDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFF-S 704

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            L      P  F Y   I     +G  ++   + +EM + G  PN V  +A+I+G+CK  
Sbjct: 705 MLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSE 764

Query: 568 TLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKG- 626
            ++ A+++F  L ++ L    N + Y+ ++  + K    D        F L+ K+  +G 
Sbjct: 765 NVDRAQRLFHKLHQKGLF--PNVVTYNTLIDGYCKIGNMDAA------FKLKDKMIEEGI 816

Query: 627 -----CKLLSS 632
                C LL S
Sbjct: 817 SPSIQCNLLES 827



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/432 (22%), Positives = 183/432 (42%), Gaps = 58/432 (13%)

Query: 145 QKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLC-KP 201
           +KG   N  +Y  L   YC                   Q ++ E  ++L  M+      P
Sbjct: 255 EKGVSRNVVTYTLLIKGYC------------------KQCKMDEAEKVLRGMQEEAALVP 296

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           D  AY  +I        +D  +R+ +EM +  ++ ++    +LI G CK G +     + 
Sbjct: 297 DERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVI 356

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             M +  +  D   Y  L++G   EG   +A +L   ++  G    +  YN+++ GLCRV
Sbjct: 357 TRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRV 416

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
             FD A +++ + ++  +APD    + LL         D  FK+                
Sbjct: 417 GAFDDALQIWHLMMKRGVAPDEVGYSTLL---------DGLFKM---------------- 451

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRG 440
                     E    A  +++++  +G++   I +N ++  L ++G++ +A  +F KM+ 
Sbjct: 452 ----------ENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKD 501

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
           L    + +++   I  + ++ ++ +A +    +      PS+  YN L  GL K   +  
Sbjct: 502 LGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVE 561

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
              L+ + +G     P    Y   I   C+ G  +K      EMT+ G   N +ICS ++
Sbjct: 562 VTDLLTE-MGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMV 620

Query: 561 SGMCKHGTLEEA 572
           SG+ + G ++EA
Sbjct: 621 SGLYRLGRIDEA 632



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/445 (22%), Positives = 178/445 (40%), Gaps = 58/445 (13%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
           Q+G +    +YN L   L R   F  A Q+  LM               M+R +  PD  
Sbjct: 396 QEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLM---------------MKRGVA-PDEV 439

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            Y+ ++  L    N +    +W+++         + + T+I GLCK G++V   E+F +M
Sbjct: 440 GYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKM 499

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKA-------------------------------- 292
           K+ G   D   Y  LI+G      VG+A                                
Sbjct: 500 KDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRL 559

Query: 293 ---CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349
               DLL ++   G   ++  Y ++I G C+    DKA+  +    ++ L+ +    + +
Sbjct: 560 VEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTM 619

Query: 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF--EFLVGKEERIMMALDVFEELKGK 407
           +     +GR+D    L+ +M    F    D E F   +      ++I  +LD  E  K  
Sbjct: 620 VSGLYRLGRIDEANLLMQKMVDHGF--FPDHECFLKSDIRYAAIQKIADSLD--ESCKTF 675

Query: 408 GYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
              +  +YNI +  L + G+V  A   F  +       ++ ++   I  +  +G++ EA 
Sbjct: 676 LLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAF 735

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
              ++++    VP++  YN L  GLCK   +D A  L    L      P    Y   I  
Sbjct: 736 RLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHK-LHQKGLFPNVVTYNTLIDG 794

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPN 552
            C+ G  +   ++ ++M +EG  P+
Sbjct: 795 YCKIGNMDAAFKLKDKMIEEGISPS 819



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 134/303 (44%), Gaps = 21/303 (6%)

Query: 91  FITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKH 150
            I+  F+  +      ++TE+  +R +TP++V          T  +    W  K+     
Sbjct: 549 LISGLFKSRRLVEVTDLLTEMG-IRGLTPNIV----------TYGALIDGWC-KEGMLDK 596

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY-TAM 209
            F+SY  +       N+   +  V  L    GRI E   +++KM  +   PD   +  + 
Sbjct: 597 AFSSYFEMTENGLSANIIICSTMVSGLY-RLGRIDEANLLMQKMVDHGFFPDHECFLKSD 655

Query: 210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269
           IR  A ++  D+     +E  K  +  + + Y   I GLCK G+V      F  +   G 
Sbjct: 656 IRYAAIQKIADS----LDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGF 711

Query: 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329
           + D   Y  LI G    G V +A  L  +++  G   ++  YN++I GLC+ +  D+A +
Sbjct: 712 VPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQR 771

Query: 330 LFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM--EKLKFSVAAD-LEKFFEF 386
           LF    Q  L P+  T N L+    ++G MD  FKL  +M  E +  S+  + LE    +
Sbjct: 772 LFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSIQCNLLESVSMW 831

Query: 387 LVG 389
           LVG
Sbjct: 832 LVG 834



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 22/199 (11%)

Query: 400 VFEELKG--KGYSSVP-IYNILMGALLEIGEVKKALYLFGKM---------RGLNLEVNS 447
           +++EL G  + ++  P ++++++   +E G  K ALY+F  M         R  N  +N+
Sbjct: 107 IWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNN 166

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
           L         V++G+   A   + ++I +  VP V   + +    CK G++D A   V+ 
Sbjct: 167 L---------VKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKK 217

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            + N+   P    Y   I      G+ E    VL  M+++G   N V  + +I G CK  
Sbjct: 218 -MENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQC 276

Query: 568 TLEEARKVFTNLRERKLLT 586
            ++EA KV   ++E   L 
Sbjct: 277 KMDEAEKVLRGMQEEAALV 295



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 87/192 (45%), Gaps = 3/192 (1%)

Query: 397 ALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           AL VF+ +   G   S+   N L+  L++ GE   A Y++ +M  + +  +    SI + 
Sbjct: 141 ALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVN 200

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
              + G + EA     K+  +   P++  Y+ L  G   +G+++AA  +++  +      
Sbjct: 201 AFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLK-FMSEKGVS 259

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC-PPNEVICSAIISGMCKHGTLEEARK 574
                Y L I   C+  + ++  +VL  M +E    P+E     +I G C+ G +++A +
Sbjct: 260 RNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVR 319

Query: 575 VFTNLRERKLLT 586
           +   +    L T
Sbjct: 320 LLDEMLRLGLKT 331


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 112/480 (23%), Positives = 200/480 (41%), Gaps = 68/480 (14%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177
           TP  + + L+ +N+ T A +   WA KQ  ++ N + Y                +++   
Sbjct: 53  TPAQLLDTLRRQNDETAALRLLSWASKQPNFRPNSSIY----------------EEILRK 96

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           +   G    M +IL++M+   C+ D       I   A          ++EE+        
Sbjct: 97  LGKVGSFNSMKDILQEMKGLDCQIDRGVLLIFIDSYAK-------FELYEEI-------- 141

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
                     LC    +V   E+     E G+ +D  +Y  L+  LV   K+    ++  
Sbjct: 142 ----------LC----IVEVMEV-----EFGLALDTLLYNFLLNVLVDGNKLKLVENVHS 182

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            +V  G + D+  +N +I  LC+  Q   A  + E      L PD  T   L+    E G
Sbjct: 183 TMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEG 242

Query: 358 RMDNFFKLLAQM--------------EKLKFSVAADLEKFFEFL--VGKEERIMMALDVF 401
            MD  F++  QM                  F     +E+   F+  +  E +  MA++++
Sbjct: 243 NMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELY 302

Query: 402 EELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
            E+K KG       YN+L+ +L   G++++AL L  +M       N ++++  I    ++
Sbjct: 303 NEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKN 362

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
             I EA E  +++       +   YN L  GLCK   +  A  L+ D +      P +F 
Sbjct: 363 KKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLM-DQMIMEGLKPDKFT 421

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           Y   + + CR G+ +K  +++  MT  GC P+ V    +I G+CK G +E A ++  +++
Sbjct: 422 YNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQ 481



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 140/330 (42%), Gaps = 37/330 (11%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           M ++G+    +E+  +M+   C+PD F Y  +I  L     L   L +  EM+      +
Sbjct: 289 MSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARN 348

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ Y TLI G CK  ++    E+F +M+  G+  +   Y  LI+GL    +V +A  L+ 
Sbjct: 349 VITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMD 408

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            ++  G + D   YNS++   CR     KA  + +    +   PD  T   L+    + G
Sbjct: 409 QMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAG 468

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYN 416
           R++   +LL  ++                                    KG    P  YN
Sbjct: 469 RVEVASRLLRSIQL-----------------------------------KGMVLTPHAYN 493

Query: 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD-ILEACECHNKIIE 475
            ++ AL +    K+A+ LF +M       ++ ++ I  +    SG  I EA +   ++IE
Sbjct: 494 PVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLSNSGGPIGEAVDFVIEMIE 553

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
              +P  +++  L +GLC +   D  + LV
Sbjct: 554 KGFLPEFSSFYMLAEGLCSLSMEDTLIKLV 583



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 21/250 (8%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEM 187
           G   N  +YN L     +N     A+++ + M+ QG                   R+ E 
Sbjct: 344 GCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEA 403

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            +++++M     KPD F Y +M+     E ++     + + M  +  E D++ Y TLI G
Sbjct: 404 AQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGG 463

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK GRV     L R ++  G+++    Y  +I+ L    +  +A  L +++ + G   D
Sbjct: 464 LCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPD 523

Query: 308 LGIYNSIIGGLCRVKQ-FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
              Y  +  GL        +A       ++    P+FS+   L      +   D   KL+
Sbjct: 524 AFTYKIVFRGLSNSGGPIGEAVDFVIEMIEKGFLPEFSSFYMLAEGLCSLSMEDTLIKLV 583

Query: 367 -AQMEKLKFS 375
              MEK  FS
Sbjct: 584 DLVMEKANFS 593


>gi|255661018|gb|ACU25678.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 376

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 156/331 (47%), Gaps = 6/331 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI +  E+ E M +   + +V ++  M+R L     ++  + +WE MKK     D + Y
Sbjct: 39  GRIKDCFELWELMGKEGGR-NVASFNIMMRGLFDNGKVNEVISIWELMKKSGFVEDSITY 97

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ GLCK G + +   +    +  G ++D   Y  +I  L  + K+ KA  +L  ++ 
Sbjct: 98  GILVHGLCKNGDINKSLHMLEIAEVKGGVLDAFAYSAMINWLCKDSKLDKAVSVLNGMIK 157

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRM 359
            G   +  +YN++I GL    +F+ A ++F+       +P   T N L+  +C AE  R 
Sbjct: 158 XGCMPNAHVYNALINGLVGASKFEDAIRVFQEMGNTHCSPTIITYNTLINGLCKAE--RF 215

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
              + L+ +M +  ++            +    ++ MAL ++ ++  KG+   V ++NIL
Sbjct: 216 GEAYDLVKEMLEKGWNPCVITYSLLIKGLCLGRKVEMALHLWNQVINKGFKPDVQMHNIL 275

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L  +G+ + AL L+  M   N   N ++ +  +Z   + GDI  A     +I+    
Sbjct: 276 IHGLCSVGKTQLALSLYFDMNRWNCAPNLVTHNTLMZGFYKDGDIRNALATWARILRNGV 335

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
            P + +YN   KGLC    I  A++ + D L
Sbjct: 336 QPDIISYNITLKGLCSCNRISGAILFLHDAL 366



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 123/267 (46%), Gaps = 7/267 (2%)

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C     D A  +++  V+ +++PD    N +L    ++GR+ + F+L   M K      A
Sbjct: 1   CESGDIDAAKMVYKEIVESEVSPDAVVYNAMLNGFFKVGRIKDCFELWELMGKEGGRNVA 60

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLF-- 435
                   L     ++   + ++E +K  G+    I Y IL+  L + G++ K+L++   
Sbjct: 61  SFNIMMRGLF-DNGKVNEVISIWELMKKSGFVEDSITYGILVHGLCKNGDINKSLHMLEI 119

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +++G  L+  + ++S  I    +   + +A    N +I+   +P+   YN L  GL   
Sbjct: 120 AEVKGGVLD--AFAYSAMINWLCKDSKLDKAVSVLNGMIKXGCMPNAHVYNALINGLVGA 177

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
            + + A+ + ++ +GN    PT   Y   I  +C++    +  +++ EM ++G  P  + 
Sbjct: 178 SKFEDAIRVFQE-MGNTHCSPTIITYNTLINGLCKAERFGEAYDLVKEMLEKGWNPCVIT 236

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRER 582
            S +I G+C    +E A  ++  +  +
Sbjct: 237 YSLLIKGLCLGRKVEMALHLWNQVINK 263



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 68/163 (41%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  E  +++++M      P V  Y+ +I+ L   R ++  L +W ++     + DV  + 
Sbjct: 214 RFGEAYDLVKEMLEKGWNPCVITYSLLIKGLCLGRKVEMALHLWNQVINKGFKPDVQMHN 273

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI GLC  G+      L+ +M       +   +  L+ZG   +G +  A      ++ +
Sbjct: 274 ILIHGLCSVGKTQLALSLYFDMNRWNCAPNLVTHNTLMZGFYKDGDIRNALATWARILRN 333

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST 345
           G + D+  YN  + GLC   +   A       +   + P   T
Sbjct: 334 GVQPDIISYNITLKGLCSCNRISGAILFLHDALTKKIFPTIIT 376


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 186/429 (43%), Gaps = 14/429 (3%)

Query: 169 RAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228
            A + +  L     R  +   +  +M R   K  V  +  MI VL  E  L         
Sbjct: 157 HACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGL 216

Query: 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288
           M+   ++ +V+ Y T+I G C  GRV     +F  MK  G+  D   YG  I G+  EGK
Sbjct: 217 MEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGK 276

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
           + +A  +L+ + + G R     YN++I G C     + A+   +  V++ L P  ST N 
Sbjct: 277 LEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNM 336

Query: 349 L---LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER---IMMALDVFE 402
           L   L    +M   D   K +++   +  SV       +  L+    R   +  A  + +
Sbjct: 337 LIHALFLDCKMDEADGIIKEMSEKGLVPDSVT------YNILINGYCRCGNVKKAFTLHD 390

Query: 403 ELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           E+  KG     + Y  L+  L + G +K+A  LF K+    +  + + F+  I  H  +G
Sbjct: 391 EMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANG 450

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
           ++  A     ++ +M  VP    +N L +G C+ G+++AA  L+ + + +    P    Y
Sbjct: 451 NMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEE-MKSRGIKPDHISY 509

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              I    + G+ +    V +EM   G  P  +  +A+I G+CK+   + A ++   +  
Sbjct: 510 NTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMIS 569

Query: 582 RKLLTEANT 590
           + +    NT
Sbjct: 570 KGITPNDNT 578



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 90/396 (22%), Positives = 169/396 (42%), Gaps = 6/396 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  +  E  + M+     P V A   M+ +       +    ++ EM +  +++ V+ + 
Sbjct: 136 RGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFN 195

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            +I  LCK G++ +  E    M+  GI  +   Y  +I G    G+V  A  +   +   
Sbjct: 196 IMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCR 255

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + D   Y S I G+C+  + ++A  + E   +  L P   T N L+      G ++  
Sbjct: 256 GVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMA 315

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYNILM 419
           F    +M +                +  + ++  A  + +E+  KG   VP    YNIL+
Sbjct: 316 FDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGL--VPDSVTYNILI 373

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
                 G VKKA  L  +M    ++   ++++  I    + G + +A +   KI+     
Sbjct: 374 NGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIF 433

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P +  +N L  G C  G +D A  ++++ +  +   P E  +   +   CR G+ E   E
Sbjct: 434 PDLIMFNALIDGHCANGNMDRAFAMLKE-MDQMKVVPDEVTFNTLMQGRCREGKVEAARE 492

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
           ++ EM   G  P+ +  + +ISG  K G +++A +V
Sbjct: 493 LIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRV 528



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 177/403 (43%), Gaps = 36/403 (8%)

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQV 174
           VT +++  VL  E     A +F     +  G K N  +YN +   YC             
Sbjct: 192 VTFNIMINVLCKEGKLKKAKEFIGLM-EALGIKPNVVTYNTIIHGYC------------- 237

Query: 175 PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLV 234
                S+GR+     I + M+    KPD + Y + I  +  E  L+    + E+MK+  +
Sbjct: 238 -----SRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGL 292

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
               + Y TLI G C  G +    +   +M   G++   + Y +LI  L  + K+ +A  
Sbjct: 293 RPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADG 352

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           ++K++ + G   D   YN +I G CR     KA+ L +  +   + P   T   L+   +
Sbjct: 353 IIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLS 412

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL-----VGKEERIMMALDVFEELKGKGY 409
           + GRM     L  ++  ++  +  DL  F   +      G  +R    L   +++K    
Sbjct: 413 KRGRMKQADDLFEKI--VRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMK---- 466

Query: 410 SSVP---IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
             VP    +N LM      G+V+ A  L  +M+   ++ + +S++  I  + + GD+ +A
Sbjct: 467 -VVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDA 525

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509
               ++++ +   P++  YN L +GLCK  E D A  L+++ +
Sbjct: 526 FRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMI 568



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 16/206 (7%)

Query: 145 QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVF 204
            KG +    +Y +L Y LS+                +GR+ +  ++ EK+ R    PD+ 
Sbjct: 394 SKGIQPTRVTYTSLIYVLSK----------------RGRMKQADDLFEKIVRKGIFPDLI 437

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
            + A+I    A  N+D    + +EM +  V  D + + TL+ G C+ G+V    EL  EM
Sbjct: 438 MFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEM 497

Query: 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324
           K  GI  D   Y  LI G    G +  A  +  +++  G+   L  YN++I GLC+ ++ 
Sbjct: 498 KSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEG 557

Query: 325 DKAYKLFEVTVQDDLAPDFSTVNPLL 350
           D A +L +  +   + P+ +T   L+
Sbjct: 558 DHAEQLLKEMISKGITPNDNTYLSLI 583


>gi|242061542|ref|XP_002452060.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
 gi|241931891|gb|EES05036.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
          Length = 674

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 190/428 (44%), Gaps = 46/428 (10%)

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
           E  E++ +M RN C P+   +   IR       LD  + + E+M K     DV+ Y TL+
Sbjct: 237 EAEELMREMIRNNCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCMPDVVIYSTLV 296

Query: 246 MGLCKGGRVVRGHELFREM--KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
            G  + GRV    +L   M  + N +  + A+ G+ I G   E  VG   +L+ ++V   
Sbjct: 297 NGFSEHGRVDDALKLLSTMLCRPNTVCYNAALKGLCIAGRWDE--VG---ELIAEMVRKD 351

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
              +   ++++I  LC+ +  + A ++ E   +    PD  + N ++ C +E    D+  
Sbjct: 352 CPPNDATFSTLINSLCQNRLAEYAIEVLEQMQKYGYMPDVVSYNTIISCFSEQACADDAL 411

Query: 364 KLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDVFEE-LKGKGYSSVPIYNILMG 420
           KLL  M         D   F   L  + + ER   A ++  + LK   +++   +NIL+ 
Sbjct: 412 KLLNSM-----LCKPDTISFNAVLKCLCRAERWYDAAELMAKMLKEDCHTNEMTFNILID 466

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG------DILEACECHNKII 474
           +L + G+VK A+ +F  M       + +++S  I    E G      D+  +  C   I 
Sbjct: 467 SLCQNGQVKDAIEMFELMPKYRCTPDIVTYSSLINGFSEQGLDKVAFDLFRSMPCRADIF 526

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEID-----AAMMLVRDCLGNVASGPTEFKYALTILHVC 529
                    +YN   KGLC     D      A M+ +DCL      P E  + + I  +C
Sbjct: 527 ---------SYNATLKGLCMAARWDDAGELIADMVTKDCL------PNEVTFNILINSLC 571

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           + G   + IEV  +M + G  P+    +A+I+G  + G L++A K  + +       E +
Sbjct: 572 QKGLVNRAIEVYEQMPKYGITPDIFTYNALINGYSEQGCLDDALKFLSTMP-----CEPD 626

Query: 590 TIVYDEIL 597
           TI Y+ IL
Sbjct: 627 TISYNSIL 634



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 164/378 (43%), Gaps = 15/378 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P V     +I+ L A R L    RV E +K     AD +++ TL+ G C+ G +     +
Sbjct: 117 PAVITCNILIKKLCARRRLADAERVLEALKTSGA-ADAVSHNTLVAGYCRDGSLWDAERV 175

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
               + +G   +   Y  LI+G    G++    D L+ +       D   YN+++ GLC 
Sbjct: 176 LEAARASGA-ANVVTYTALIDGYCRSGRLT---DALRLIASMPVAPDTYTYNTVLKGLCF 231

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
            KQ+++A +L    ++++  P+  T    +    + G +D   +LL QM   K+    D+
Sbjct: 232 AKQWEEAEELMREMIRNNCHPNEVTFATQIRAFCQNGLLDRAVELLEQMP--KYGCMPDV 289

Query: 381 EKFFEFLVGKEE--RIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM 438
             +   + G  E  R+  AL +   +  +   +   YN  +  L   G   +   L  +M
Sbjct: 290 VIYSTLVNGFSEHGRVDDALKLLSTMLCR--PNTVCYNAALKGLCIAGRWDEVGELIAEM 347

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
              +   N  +FS  I    ++     A E   ++ +   +P V +YN +     +    
Sbjct: 348 VRKDCPPNDATFSTLINSLCQNRLAEYAIEVLEQMQKYGYMPDVVSYNTIISCFSEQACA 407

Query: 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
           D A+ L    L ++   P    +   +  +CR+       E++ +M +E C  NE+  + 
Sbjct: 408 DDALKL----LNSMLCKPDTISFNAVLKCLCRAERWYDAAELMAKMLKEDCHTNEMTFNI 463

Query: 559 IISGMCKHGTLEEARKVF 576
           +I  +C++G +++A ++F
Sbjct: 464 LIDSLCQNGQVKDAIEMF 481



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 142/338 (42%), Gaps = 45/338 (13%)

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
            +LI+ L    ++  A  +L+ L  SG  AD   +N+++ G CR      A ++ E   +
Sbjct: 123 NILIKKLCARRRLADAERVLEALKTSG-AADAVSHNTLVAGYCRDGSLWDAERVLEA-AR 180

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
              A +  T   L+      GR+ +  +L+A M                          +
Sbjct: 181 ASGAANVVTYTALIDGYCRSGRLTDALRLIASMP-------------------------V 215

Query: 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456
           A D +             YN ++  L    + ++A  L  +M   N   N ++F+  I+ 
Sbjct: 216 APDTY------------TYNTVLKGLCFAKQWEEAEELMREMIRNNCHPNEVTFATQIRA 263

Query: 457 HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516
             ++G +  A E   ++ +   +P V  Y+ L  G  + G +D A+ L    L  +   P
Sbjct: 264 FCQNGLLDRAVELLEQMPKYGCMPDVVIYSTLVNGFSEHGRVDDALKL----LSTMLCRP 319

Query: 517 TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
               Y   +  +C +G  +++ E++ EM ++ CPPN+   S +I+ +C++   E A +V 
Sbjct: 320 NTVCYNAALKGLCIAGRWDEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLAEYAIEVL 379

Query: 577 TNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK 614
             +++   + +   + Y+ I+    ++  AD  L  L 
Sbjct: 380 EQMQKYGYMPD--VVSYNTIISCFSEQACADDALKLLN 415



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 25/240 (10%)

Query: 149 KHNFASYNALAYCLSR-NNLFRAADQVPE---------------LMDS---QGRIAEMLE 189
           K +  S+NA+  CL R    + AA+ + +               L+DS    G++ + +E
Sbjct: 420 KPDTISFNAVLKCLCRAERWYDAAELMAKMLKEDCHTNEMTFNILIDSLCQNGQVKDAIE 479

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           + E M +  C PD+  Y+++I   + E+ LD     ++  +     AD+ +Y   + GLC
Sbjct: 480 MFELMPKYRCTPDIVTYSSLINGFS-EQGLDKV--AFDLFRSMPCRADIFSYNATLKGLC 536

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
              R     EL  +M     L +   + +LI  L  +G V +A ++ + +   G   D+ 
Sbjct: 537 MAARWDDAGELIADMVTKDCLPNEVTFNILINSLCQKGLVNRAIEVYEQMPKYGITPDIF 596

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            YN++I G       D A K       +   PD  + N +L       R  +  KL+ +M
Sbjct: 597 TYNALINGYSEQGCLDDALKFLSTMPCE---PDTISYNSILKGLCRAERWKDAEKLVTEM 653



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 8/157 (5%)

Query: 199 CKPDVFAYTAMIRVLA-AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257
           C+ D+F+Y A ++ L  A R  DA   + + + KD +  +V  +  LI  LC+ G V R 
Sbjct: 521 CRADIFSYNATLKGLCMAARWDDAGELIADMVTKDCLPNEV-TFNILINSLCQKGLVNRA 579

Query: 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317
            E++ +M + GI  D   Y  LI G   +G +    D LK L       D   YNSI+ G
Sbjct: 580 IEVYEQMPKYGITPDIFTYNALINGYSEQGCLD---DALKFLSTMPCEPDTISYNSILKG 636

Query: 318 LCRVKQFDKAYKLFEVTVQDDLAPD---FSTVNPLLV 351
           LCR +++  A KL    ++ +  P+   F   N L +
Sbjct: 637 LCRAERWKDAEKLVTEMLRKNCTPNEVTFKYANQLFI 673


>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74750-like [Glycine max]
          Length = 873

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 166/389 (42%), Gaps = 20/389 (5%)

Query: 76  PKTFQLQRHLSPIARFITDAFRK--NQFQWGPQVVTELSKLRRVTPDLVA-EVLKVENNP 132
           P+  ++    +P+ R I +       Q +WGP     L  L        A ++LK   +P
Sbjct: 298 PRDLKMSARTAPMNRRIVEVVSDILRQLRWGPTAEKALYNLNFSMDAYQANQILKQLQDP 357

Query: 133 TLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
           ++A  FF W  +Q G++H+  +Y  +   L R   F   D + +L             LE
Sbjct: 358 SVALGFFDWLRRQPGFRHDGHTYTTMVGILGRARRF---DSISKL-------------LE 401

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
           +M ++ C+P+V  Y  +I        L   L V+ EM++   E D + Y TLI    K G
Sbjct: 402 QMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAG 461

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
            +     +++ M+E G+  D   Y V+I  L   G +  A  L  ++V+ G   +L  YN
Sbjct: 462 FIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYN 521

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
            +I    + + ++ A KL+         PD  T + ++      G ++    +  +M++ 
Sbjct: 522 IMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQK 581

Query: 373 KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKA 431
            +     +      L GK   +  A + ++ +   G   +VP  N L+ A L +  +  A
Sbjct: 582 NWVPDEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNVPTCNSLLSAFLRLHRLPDA 641

Query: 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
             L   M  L L  +  ++++ + C  E+
Sbjct: 642 YNLVQSMVALGLRPSLQTYTLLLSCCTEA 670



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 123/291 (42%), Gaps = 41/291 (14%)

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC--CAEMGRMD 360
           G+R D   Y +++G L R ++FD   KL E  V+D   P+  T N L+ C  CA      
Sbjct: 372 GFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCA------ 425

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-YNILM 419
           N+ K                                AL+VF E++  G     + Y  L+
Sbjct: 426 NYLK-------------------------------EALNVFNEMQEVGCEPDRVTYCTLI 454

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
               + G +  A+ ++ +M+   L  ++ ++S+ I C  ++G++  A     +++E   V
Sbjct: 455 DIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCV 514

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P++  YN +     K    + A+ L  D + N    P +  Y++ +  +   G  E+   
Sbjct: 515 PNLVTYNIMIALQAKARNYEMALKLYHD-MQNAGFQPDKVTYSIVMEALGHCGYLEEAES 573

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           V  EM Q+   P+E +   ++    K G +E+A + +  +    LL    T
Sbjct: 574 VFVEMQQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNVPT 624


>gi|297832366|ref|XP_002884065.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329905|gb|EFH60324.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1056

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 125/557 (22%), Positives = 249/557 (44%), Gaps = 57/557 (10%)

Query: 103 WGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAY-- 160
           W PQ+ +  S L   + D +  ++  + + + A + F WA    G+ H+ ++Y AL Y  
Sbjct: 16  WLPQLRSS-SLLSVPSDDHIVRLILDQKSASGALETFRWASTFPGFIHSRSTYRALFYKL 74

Query: 161 CLSR--NNLFRAADQVPE-------------LMDSQGR---IAEMLEILEKMRRNLCKPD 202
           C+ R  + +++  D++PE             ++   GR      ++ +++ + +   KP 
Sbjct: 75  CVFRRFDTVYQLLDEMPESTGLPPDDAIFVTIIRGFGRARLTKRVISVVDLVSKFGIKPS 134

Query: 203 VFAYTAMIRVLAAERNLDACLRVWE-EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           +  + +++ VL  E ++D     +  +M    ++ D   Y  L+ GLC   R+  G +L 
Sbjct: 135 LKVFNSILDVLVKE-DIDIAREFFRRKMMASGIQGDEYTYGILMKGLCLTNRIGDGFKLL 193

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
           + MK  G+  +  +Y  L+  L   GKVG+A  L+ ++ +     D+  +N +I   C  
Sbjct: 194 QIMKTCGVAPNTVVYNTLLHALCKNGKVGRARSLMSEMKEPN---DV-TFNILISAYCNE 249

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME----KLKFSVA 377
           ++  ++  L E      L PD  TV  ++      GR+    ++L ++E    K+     
Sbjct: 250 QKLIQSMVLLEKCFSLGLVPDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVAC 309

Query: 378 ADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFG 436
             L K +   VGK   + +A   F+E++ KGY  +V  YN+L+    ++G +  AL  F 
Sbjct: 310 NTLVKGY-CAVGK---MRVAQRFFQEMERKGYLPNVETYNLLIAGFCDVGMLDSALDTFN 365

Query: 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS------VAAYNCLTK 490
            M+   +  N  +F+  I+     G   +      KI+E+ Q         +  YN +  
Sbjct: 366 DMKTDAIRWNFATFNTLIRGLSVRGRTDDGI----KILELMQDSETVHGARIDPYNSVIY 421

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           G  K    + A+  +   L      P     +  ++ +C  G  + +    ++MT EG  
Sbjct: 422 GFYKENRWEDALEFL---LKMEKLFPRAVDRSFKLISLCEKGGMDDVKTAYDQMTGEGGV 478

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVL 610
           P+ ++   +I    + G +EE  ++  ++  R  L  ++T  ++ ++I   K+   D V+
Sbjct: 479 PSVIVSHCLIHRYSQEGYMEETLELINDMVTRGYLPRSST--FNAVIIGFCKE---DKVM 533

Query: 611 SGLKFFGLESKLKAKGC 627
           +G+KF      +  +GC
Sbjct: 534 NGIKFV---EDMAERGC 547



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 168/382 (43%), Gaps = 24/382 (6%)

Query: 144 KQKGYKHNFASYNALAYCLSRNN-LFRAADQVPELMD--------------SQGRIAEML 188
           K  G   N   YN L + L +N  + RA   + E+ +              ++ ++ + +
Sbjct: 197 KTCGVAPNTVVYNTLLHALCKNGKVGRARSLMSEMKEPNDVTFNILISAYCNEQKLIQSM 256

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
            +LEK       PDV   T ++ VL  E  +   L V E ++    + DV+A  TL+ G 
Sbjct: 257 VLLEKCFSLGLVPDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGY 316

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           C  G++      F+EM+  G L +   Y +LI G    G +  A D   D+     R + 
Sbjct: 317 CAVGKMRVAQRFFQEMERKGYLPNVETYNLLIAGFCDVGMLDSALDTFNDMKTDAIRWNF 376

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP---LLVCCAEMGRMDNFFKL 365
             +N++I GL    + D   K+ E+ +QD      + ++P   ++    +  R ++  + 
Sbjct: 377 ATFNTLIRGLSVRGRTDDGIKILEL-MQDSETVHGARIDPYNSVIYGFYKENRWEDALEF 435

Query: 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV-FEELKGK-GYSSVPIYNILMGALL 423
           L +MEKL F  A D  + F+ +   E+  M  +   ++++ G+ G  SV + + L+    
Sbjct: 436 LLKMEKL-FPRAVD--RSFKLISLCEKGGMDDVKTAYDQMTGEGGVPSVIVSHCLIHRYS 492

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G +++ L L   M        S +F+  I    +   ++   +    + E   VP   
Sbjct: 493 QEGYMEETLELINDMVTRGYLPRSSTFNAVIIGFCKEDKVMNGIKFVEDMAERGCVPDRE 552

Query: 484 AYNCLTKGLCKIGEIDAAMMLV 505
           +YN L + LC  G+I  A +L+
Sbjct: 553 SYNPLLEELCVKGDIQKAWLLL 574



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 23/233 (9%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS---------------------QG 182
           K    + NFA++N L   LS         ++ ELM                       + 
Sbjct: 368 KTDAIRWNFATFNTLIRGLSVRGRTDDGIKILELMQDSETVHGARIDPYNSVIYGFYKEN 427

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R  + LE L KM +    P     +  +  L  +  +D     +++M  +     V+   
Sbjct: 428 RWEDALEFLLKMEKLF--PRAVDRSFKLISLCEKGGMDDVKTAYDQMTGEGGVPSVIVSH 485

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI    + G +    EL  +M   G L   + +  +I G   E KV      ++D+ + 
Sbjct: 486 CLIHRYSQEGYMEETLELINDMVTRGYLPRSSTFNAVIIGFCKEDKVMNGIKFVEDMAER 545

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
           G   D   YN ++  LC      KA+ L  + V+  + PD S  + L+ C ++
Sbjct: 546 GCVPDRESYNPLLEELCVKGDIQKAWLLLSLMVEKSIVPDSSMWSSLMFCLSQ 598


>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 184/412 (44%), Gaps = 9/412 (2%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE-RNLDACLRVWEEMKKDLVEADVMA 240
           G +  +++I ++M      P+V + + +I+      R L+AC  ++ ++ K   E  ++ 
Sbjct: 391 GDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEAC-GLFVQILKLGFEPSILT 449

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G CK G +  G  L+ +M +     D  +Y VLI GL  +G VG A       V
Sbjct: 450 YSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAV 509

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           + G   ++   N+++   CR+K    A K++ +    ++  D  T   L+   A+ GR+D
Sbjct: 510 NRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVD 569

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEEL-KGKGYSSVPIYNI 417
               L  QM K  F    D+  +   + G  K ++    L +F+ + K      + IYN+
Sbjct: 570 EALMLFFQMLKKDFK--PDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNV 627

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           L+      G ++ AL LF  +     + +  +F+  I C+     + +A +   K+    
Sbjct: 628 LINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQ 687

Query: 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE-AEK 536
             P+   +  L    C+ G +D AM++    L      P    Y+  I    +S    E 
Sbjct: 688 LRPNAITFTILIDAFCREGRMDDAMLMFSKMLEE-GPEPNLVTYSCLIHGYFKSQSMMES 746

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA 588
            +++ NEM +    PN V  S +I G+CK G ++EA   F    ++ LL + 
Sbjct: 747 GLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLLPDV 798



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/452 (21%), Positives = 193/452 (42%), Gaps = 39/452 (8%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259
           KP+V  ++ +I     E NLD    +++ M  + V  D++ Y  LI GL K GR+  G  
Sbjct: 304 KPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQR 363

Query: 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319
           L     + GI +D   +   ++  V  G +G+   + K +++ G   ++   + +I G C
Sbjct: 364 LLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFC 423

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
           +  +  +A  LF   ++    P   T + L+    + G + + F L   M K +      
Sbjct: 424 QNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTI 483

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
           +       + K+  +  AL  F +   +G S +V   N L+ +   +  +  A+ ++  M
Sbjct: 484 VYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLM 543

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
             LN++ ++++++I I+   + G + EA     ++++    P V  Y  L  GLCK+ + 
Sbjct: 544 GMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKS 603

Query: 499 DAAMML--------------VRDCLGNVAS--------------------GPTEFKYALT 524
            A + +              + + L N+ S                     P  F +   
Sbjct: 604 SAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTM 663

Query: 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
           I   C     +  +++  +MT E   PN +  + +I   C+ G +++A  +F+ + E   
Sbjct: 664 ICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEG- 722

Query: 585 LTEANTIVYDEILIEHMKKKTADLVLSGLKFF 616
             E N + Y  ++  H   K+  ++ SGLK +
Sbjct: 723 -PEPNLVTYSCLI--HGYFKSQSMMESGLKLY 751



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 119/546 (21%), Positives = 221/546 (40%), Gaps = 80/546 (14%)

Query: 92  ITDAFRKNQFQWGPQVVTELSKLRRV-TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKH 150
           I  AF  NQ    P     LSKL+    PD++   + ++  P  A +FF WA        
Sbjct: 57  IVKAFH-NQQNPKPLNPILLSKLQLYHVPDVI---ISLQPKPFSAIRFFEWAESFFISPL 112

Query: 151 NFASYNALAYCLSRNNLF-RAADQVPELMDSQGRIAEMLE-------------------- 189
           +  S+ AL + L +N LF RAA    + +   G   + L+                    
Sbjct: 113 SAPSFCALLHVLLQNQLFSRAACVFDKFIMQFGNDYDTLDAFRDGFCDLDSTNHSVVYGF 172

Query: 190 ILEKMRR------------NLCKPDVFAYTAMIRVLAAERNLDACLRV----WEEMKKDL 233
           ++E   R            ++C   +F    ++ +L        C+ V    + E+   +
Sbjct: 173 LIESYCRKGMFDKSVDIFMHVCVKGIFVSPNVVYLLLGSLIDSHCVEVIVDKYGELCSAM 232

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
            E     Y  ++      G V  G    + + + G  +D      +++G+  +  +G A 
Sbjct: 233 REQPFSVYEFVMNRFMNKGEVEMGLRFHKALVQGGFGLDIITCNKILKGIWMQNDIGVAD 292

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           D    +V  G + ++  ++++I   C+    DKA+ LF+V   + + PD    + L+   
Sbjct: 293 DYFNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGL 352

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413
            + GR+++  +LL                            ++ALD   +L   G+SS  
Sbjct: 353 FKAGRLEDGQRLL----------------------------LVALDKGIKLDVVGFSSA- 383

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
                M A ++IG++ + + ++ +M    +  N +S SI I+   ++G ILEAC    +I
Sbjct: 384 -----MDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQI 438

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           +++   PS+  Y+ L  G CK G +     L  D +      P    Y++ I  +C+ G 
Sbjct: 439 LKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCE-PDTIVYSVLINGLCKQGL 497

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVY 593
               +    +    G  PN    + ++   C+   +  A KV+  +    L  +A+T+ Y
Sbjct: 498 VGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLM--GMLNIKADTVTY 555

Query: 594 DEILIE 599
             ILI+
Sbjct: 556 -TILIK 560



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 142/333 (42%), Gaps = 2/333 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           QG + + L    +       P+VF    ++      + +   ++V+  M    ++AD + 
Sbjct: 495 QGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVT 554

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  LI G  + GRV     LF +M +     D   Y  LI+GL    K      +   + 
Sbjct: 555 YTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMC 614

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
            +    D+ IYN +I    R    + A  LF   V+    PD  T N ++ C     R+D
Sbjct: 615 KNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLD 674

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILM 419
           +  +L A+M   +    A           +E R+  A+ +F ++  +G   ++  Y+ L+
Sbjct: 675 DAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLI 734

Query: 420 -GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
            G       ++  L L+ +M   N+  N +S+SI I    + G + EA       ++   
Sbjct: 735 HGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHL 794

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
           +P V AY  L +G CK+G +  AMML  + L N
Sbjct: 795 LPDVIAYTILIRGYCKVGRLTEAMMLYDNMLLN 827



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 80/161 (49%), Gaps = 1/161 (0%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ + +++  KM     +P+   +T +I     E  +D  + ++ +M ++  E +++ Y 
Sbjct: 672 RLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYS 731

Query: 243 TLIMGLCKGGRVVR-GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            LI G  K   ++  G +L+ EM EN I  +   Y +LI+GL   G + +A    +  +D
Sbjct: 732 CLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALD 791

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
                D+  Y  +I G C+V +  +A  L++  + + L PD
Sbjct: 792 KHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNMLLNRLTPD 832


>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 543

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 195/443 (44%), Gaps = 30/443 (6%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAY 206
           G K N +++N +  CL R N       V  LM   G                 +P +  +
Sbjct: 56  GVKPNVSTHNIVINCLCRLNHTVFGFSVLGLMFKIG----------------VEPSIVTF 99

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266
           T ++  L  E N+   +R  + +K    E+D      +I GLCK G         ++M+E
Sbjct: 100 TTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEE 159

Query: 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
               +D   Y  +++GL  +G V +A DL   +   G + +L  YN +I GLC   ++ +
Sbjct: 160 QNCNLDVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKE 219

Query: 327 AYKLFEVTVQDDLAPDFSTVNPL---LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
           A  L    ++  + PD  T N +    +    + R  + F  +  M  ++ +V       
Sbjct: 220 AAPLLANMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHM-GIEHNVVT----- 273

Query: 384 FEFLVGKE---ERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
           +  ++G      ++  A++VF+ +  KG   ++  YN L+    E   + KA+Y  G+M 
Sbjct: 274 YNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEMV 333

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              L+ + +++S  I    ++G  + A E    + +  Q+P +     +  GL K     
Sbjct: 334 NNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHS 393

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
            AM L R+ L  + S      Y++ +  +C SG+    +E+ + ++ +G   + V  + +
Sbjct: 394 EAMSLFRE-LEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIM 452

Query: 560 ISGMCKHGTLEEARKVFTNLRER 582
           I+G+CK G L++A  +   + E 
Sbjct: 453 INGLCKEGLLDDAEDLLMKMEEN 475



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 170/412 (41%), Gaps = 41/412 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G  +  L  L+KM    C  DV AY+A++  L  +  +   L ++ +M    ++ ++  Y
Sbjct: 145 GHSSAALSYLKKMEEQNCNLDVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTY 204

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GLC   R      L   M   GI+ D   + V+    +  G + +A  +   +  
Sbjct: 205 NCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGH 264

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++  YNSIIG  C + Q   A ++F++ ++    P+  T N L+    E   M+ 
Sbjct: 265 MGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNK 324

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNIL 418
               L +M  +   +  D+  +   + G  K  + + A ++F  +   G    +    I+
Sbjct: 325 AMYFLGEM--VNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAII 382

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L +     +A+ LF ++  +N +++ + +SI +     SG + +A E  + +     
Sbjct: 383 LDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGV 442

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
              V  YN +  GLCK G +D                                 +AE   
Sbjct: 443 KIDVVTYNIMINGLCKEGLLD---------------------------------DAE--- 466

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           ++L +M + GCPP+E   +  + G+ +   + ++ K    ++ +     A T
Sbjct: 467 DLLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRANATT 518



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/403 (21%), Positives = 172/403 (42%), Gaps = 14/403 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P V  +  +  ++A  ++    + + + M    V+ +V  +  +I  LC+    V G  +
Sbjct: 24  PCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVSTHNIVINCLCRLNHTVFGFSV 83

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              M + G+      +  ++ GL  EG V +A   +  L D GY +D     +II GLC+
Sbjct: 84  LGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCK 143

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-----EKLKFS 375
           V     A    +   + +   D +  + ++    + G +     L +QM     +   F+
Sbjct: 144 VGHSSAALSYLKKMEEQNCNLDVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFT 203

Query: 376 VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYL 434
               +     F   KE   ++A      +  KG    V  +N++ G  L+ G + +A  +
Sbjct: 204 YNCLIHGLCNFDRWKEAAPLLA-----NMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSI 258

Query: 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
           F  M  + +E N ++++  I  H     + +A E  + +I    +P++  YN L  G C+
Sbjct: 259 FSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCE 318

Query: 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
              ++ AM  + + + N    P    ++  I   C++G+     E+   M + G  P+  
Sbjct: 319 TKNMNKAMYFLGEMVNN-GLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQ 377

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597
            C+ I+ G+ K     EA  +F  L   K+ ++ + I+Y  IL
Sbjct: 378 TCAIILDGLFKCHFHSEAMSLFREL--EKMNSDLDIIIYSIIL 418



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 111/239 (46%), Gaps = 21/239 (8%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
           A   F + G   G +HN  +YN++  A+C+                    ++ + +E+ +
Sbjct: 255 AKSIFSFMG-HMGIEHNVVTYNSIIGAHCM------------------LNQMKDAMEVFD 295

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
            M R  C P++  Y ++I      +N++  +    EM  + ++ DV+ + TLI G CK G
Sbjct: 296 LMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAG 355

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
           + V   ELF  M ++G L D     ++++GL       +A  L ++L       D+ IY+
Sbjct: 356 KPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYS 415

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
            I+ G+C   + + A +LF       +  D  T N ++    + G +D+   LL +ME+
Sbjct: 416 IILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEE 474


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 104/457 (22%), Positives = 201/457 (43%), Gaps = 37/457 (8%)

Query: 151 NFASYNALAYCLSRNNLFRAADQVPELM-------------------DSQGRIAEMLEIL 191
           +  +YN+L     ++ L + A ++ E M                   D  G+I   +   
Sbjct: 318 SVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTY 377

Query: 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251
           ++M RN CKP++  Y A+I++          + V+++++      DV+ + TL+    + 
Sbjct: 378 DEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQN 437

Query: 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311
           G       +F+EMK++G + +R  Y  LI      G   ++ ++ K ++++G   D+  Y
Sbjct: 438 GLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTY 497

Query: 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           N+++  L R  ++++A KLF      D  PD  + + LL   A   ++D    L   +  
Sbjct: 498 NAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIYA 557

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE---V 428
            K      L K    +  K   +      F EL G+   S+ I N+L   +   G+   V
Sbjct: 558 EKIESHHGLVKTLVLVNSKVNNLSETEKAFLEL-GRRRCSLDI-NVLNAMVSVYGKNRMV 615

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE-CHNKIIEMSQV---PSVAA 484
           KK   +   M+G ++ +++ +++  +  +   GD    CE C N + E+      P   +
Sbjct: 616 KKVEEILSLMKGSSINLSTATYNSLMHMYSRLGD----CEKCENILTEIKSSGARPDRYS 671

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHVCRSGEAEKIIEVLN 542
           YN +     + G++  A  L  +     +SG  P    Y + +     +   E+ I+++ 
Sbjct: 672 YNTMIYAYGRKGQMKEASRLFSEM---KSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVR 728

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            M   GC PNE   ++I+   C+HG + +A+   +NL
Sbjct: 729 YMVTRGCKPNERTYNSILQEYCRHGKIADAKSFLSNL 765



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 148/380 (38%), Gaps = 15/380 (3%)

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           E D  AY  L+    +  R      +FR M  NGI      Y V++       K+     
Sbjct: 175 EPDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVY---SKIAVPWK 231

Query: 295 LLKDLVDS----GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            +  LVDS    G   D   YN++I    R   + +A K+F+        PD  T N LL
Sbjct: 232 DVVALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLL 291

Query: 351 VCCAEMGRMDNFFKLLAQME--KLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408
               +    D    +L +ME      SV         ++  K+  +  A ++ EE++ KG
Sbjct: 292 DVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYV--KDGLLKEAAELKEEMEVKG 349

Query: 409 YS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467
               V  Y  L+  L   G++  A+  + +M     + N  +++  I+ H   G   E  
Sbjct: 350 IQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMM 409

Query: 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527
              + +     VP V  +N L     + G +D+ +  V   +      P    Y   I  
Sbjct: 410 AVFDDLRSAGFVPDVVTWNTLLAVFGQNG-LDSEVSGVFKEMKKSGYVPERDTYVSLISS 468

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
             R G  ++ +E+   M + G  P+    +A++S + + G  E+A K+F  +    L   
Sbjct: 469 YSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEM--ENLDCR 526

Query: 588 ANTIVYDEILIEHMKKKTAD 607
            + + Y  +L  +   K  D
Sbjct: 527 PDELSYSSLLHAYANAKKLD 546



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/389 (17%), Positives = 155/389 (39%), Gaps = 7/389 (1%)

Query: 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH- 258
           +PD  AYTA++   +        + V+  M  + ++  ++ Y  ++    K     +   
Sbjct: 175 EPDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVV 234

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L   MK +GI +DR  Y  LI          +A  +  ++  +G+  D   +NS++   
Sbjct: 235 ALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVY 294

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
            + +  D+A  + +        P   T N L+    + G +    +L  +ME     +  
Sbjct: 295 GKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVK--GIQP 352

Query: 379 DLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLF 435
           D+  +   + G  +  +I  A+  ++E+   G   ++  YN L+      G+  + + +F
Sbjct: 353 DVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVF 412

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
             +R      + ++++  +    ++G   E      ++ +   VP    Y  L     + 
Sbjct: 413 DDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRC 472

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           G  D +M + +  +      P    Y   +  + R G  E+  ++  EM    C P+E+ 
Sbjct: 473 GLFDQSMEIYKRMI-EAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELS 531

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKL 584
            S+++        L++ + +  ++   K+
Sbjct: 532 YSSLLHAYANAKKLDKMKALSEDIYAEKI 560


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 115/485 (23%), Positives = 195/485 (40%), Gaps = 82/485 (16%)

Query: 134 LASKFFHWAGKQKGY--KHNFASYNALAYCLSRNNLFRAA-------------------- 171
           LA KF  W  KQ G   KH    Y   A+ L +  ++ +A                    
Sbjct: 92  LALKFLKWVIKQPGLELKHLTHMYCLTAHILVKARMYDSAKSILRHLCQMGIGSKSIFGA 151

Query: 172 --------DQVPELMD-------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE 216
                   + +P + D        +G I   +E  E +     KP V+    ++  +  +
Sbjct: 152 LMDTYPLCNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKD 211

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
           +  +    ++ EM    +  +V  +  LI GLC  G + +   L ++M+ENG +     Y
Sbjct: 212 KRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTY 271

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
             L+     +G+   A +L+  ++  G  AD+  YN  I  LC   +  KAY L +   +
Sbjct: 272 NTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRK 331

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
           + ++P+  T N L+          N F                          KE +I +
Sbjct: 332 EMISPNEVTYNTLI----------NGFV-------------------------KEGKIGV 356

Query: 397 ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
           A  VF E+     S +   YN L+G    +G+ ++AL L   M    L +N +++   + 
Sbjct: 357 AAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLN 416

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVA----AYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
              +     E  E   +++E  +V  +     AY  L  GLCK G +D A+ LV +   +
Sbjct: 417 GLCKH----EKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKD 472

Query: 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571
               P    Y+  I   CR G  +   E++  M + G   N++I S +I   C+HG + E
Sbjct: 473 -GVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTE 531

Query: 572 ARKVF 576
           A KV+
Sbjct: 532 AMKVY 536



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 100/437 (22%), Positives = 181/437 (41%), Gaps = 42/437 (9%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           +LE+MR N       AYT +I  L     LD  +++   M KD V  DV+ Y +LI G C
Sbjct: 430 LLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFC 489

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           + G +    E+   M  +G+++++ IY  LI      G V +A  +   +  +G+ AD  
Sbjct: 490 RVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHF 549

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
             N ++  LCR  +  +A K      +  L P+  T + ++     +G   N F     M
Sbjct: 550 TCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDM 609

Query: 370 EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVK 429
                                             +K   + S   Y  L+  L + G + 
Sbjct: 610 ----------------------------------IKCGQHPSFFTYGSLLKGLCKGGNLV 635

Query: 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
           +A     ++  +   V+S+ ++  +    +SG++ EA    +K+++ + +P    Y+ L 
Sbjct: 636 EAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLL 695

Query: 490 KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
            GLC+ G+   A+ L    +G     P    Y   +  + ++G  +       EM ++G 
Sbjct: 696 TGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGT 755

Query: 550 PPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLV 609
            P+ V  +AII    + G + +A   F+ +R   +    N   Y+ IL+    KK A   
Sbjct: 756 CPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVC--PNLATYN-ILLHGFSKKQAL-- 810

Query: 610 LSGLKFFGLESKLKAKG 626
              L++  L S +  +G
Sbjct: 811 ---LRYLSLYSTMMREG 824



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/427 (22%), Positives = 177/427 (41%), Gaps = 12/427 (2%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G + +   +L++M  N   P +  Y  ++     +    A + + + M    +EADV  
Sbjct: 246 EGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCT 305

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y   I  LC   R  + + L ++M++  I  +   Y  LI G V EGK+G A  +  ++ 
Sbjct: 306 YNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMS 365

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                 +   YN++IGG C V  F++A +L +      L  +  T   LL    +  + +
Sbjct: 366 KFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFE 425

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-----SVPIY 415
              +LL +M      V       +  L+    +  M LD   +L G  Y       V  Y
Sbjct: 426 LAKRLLERMRVNDMVVG---HIAYTVLIDGLCKNGM-LDEAVQLVGNMYKDGVNPDVITY 481

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           + L+     +G +K A  +  +M    L +N + +S  I    + G++ EA + +  +  
Sbjct: 482 SSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNC 541

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
                     N L   LC+ G++  A   +   +  +   P    Y   I      G+  
Sbjct: 542 NGHGADHFTCNVLVSSLCRDGKLGEAEKFLCH-MSRIGLVPNSITYDCIINGYGSIGDPL 600

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
                 ++M + G  P+     +++ G+CK G L EA+K F N R   +    ++++Y+ 
Sbjct: 601 NAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKK-FLN-RLHYIPGAVDSVMYNT 658

Query: 596 ILIEHMK 602
           +L E  K
Sbjct: 659 LLAETCK 665



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/402 (21%), Positives = 171/402 (42%), Gaps = 10/402 (2%)

Query: 194  MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
            M R    P+   YT ++  L+   +  A    +EEM K     D +A+  +I    + G+
Sbjct: 715  MGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQ 774

Query: 254  VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
            +++ ++ F  M+  G+  + A Y +L+ G   +  + +   L   ++  G   D   ++S
Sbjct: 775  MMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHS 834

Query: 314  IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
            +I GL +    D   KL    + +    D  T N L+   +E G+M   F L+  M  L 
Sbjct: 835  LILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTL- 893

Query: 374  FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IYNILMGALLEIGEV 428
              V  D + +     G  K+     +  V  E+   G   +P    Y  L+  +  +G++
Sbjct: 894  -GVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGV--IPKHAQYITLINGMCRVGDI 950

Query: 429  KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
            + A  L  +M  L    + ++ S  ++  +  G   +A    + ++ M  +P++A +  L
Sbjct: 951  QGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTL 1010

Query: 489  TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
                C+  +I  A+ L +  +           Y + I+ +C +G++    E+  EM    
Sbjct: 1011 MHRFCRDAKIAEALKL-KGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRD 1069

Query: 549  CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
              PN    + ++  +     L +  K+ T+L+ER L++   +
Sbjct: 1070 LCPNITTYAVLVDAISAANNLIQGEKLLTDLQERGLISWGGS 1111



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 141/322 (43%), Gaps = 8/322 (2%)

Query: 177  LMDSQGRIAEML---EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
            ++DS  R  +M+   +    MR     P++  Y  ++   + ++ L   L ++  M ++ 
Sbjct: 765  IIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREG 824

Query: 234  VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
            +  D + + +LI+GL K G    G +L  +M   G L D+  + +LI      GK+ KA 
Sbjct: 825  IFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAF 884

Query: 294  DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            DL+  +   G   D   YN I  GL +   F ++  +    +++ + P  +    L+   
Sbjct: 885  DLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGM 944

Query: 354  AEMGRMDNFFKLLAQMEKLKFS---VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS 410
              +G +   FKL  +ME L F    VA           GK E  M+ LD    L+ +   
Sbjct: 945  CRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLD--HMLRMRLLP 1002

Query: 411  SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            ++  +  LM       ++ +AL L G M    L+++ +++++ I     +GD   A E +
Sbjct: 1003 TIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELY 1062

Query: 471  NKIIEMSQVPSVAAYNCLTKGL 492
             ++      P++  Y  L   +
Sbjct: 1063 EEMRHRDLCPNITTYAVLVDAI 1084



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 97/476 (20%), Positives = 188/476 (39%), Gaps = 57/476 (11%)

Query: 182  GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
            G + E  + L ++       D   Y  ++       NL   + ++++M ++ V  D   Y
Sbjct: 632  GNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTY 691

Query: 242  VTLIMGLCKGGRVVRGHELFREMKENGILI-DRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             +L+ GLC+ G+ V    LF      G L  +  +Y  L++GL   G    A    ++++
Sbjct: 692  SSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMM 751

Query: 301  DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
              G   D   +N+II    R  Q  KA   F       + P+ +T N LL   ++   + 
Sbjct: 752  KKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALL 811

Query: 361  NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK-----GYSSVPIY 415
             +  L + M  ++  +  D   F   ++G  +  +  L V  +L GK       +    +
Sbjct: 812  RYLSLYSTM--MREGIFPDKLTFHSLILGLSKSGIPDLGV--KLLGKMIMEGTLADQFTF 867

Query: 416  NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
            NIL+    E G+++KA  L   M  L +  +  +++       +     E+    ++++E
Sbjct: 868  NILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLE 927

Query: 476  MSQVPSVAAYNCLTKGLCKIGEIDAAM--------------------------------- 502
               +P  A Y  L  G+C++G+I  A                                  
Sbjct: 928  NGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTED 987

Query: 503  -MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
             MLV D +  +   PT   +   +   CR  +  + +++   M   G   + V  + +I 
Sbjct: 988  AMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIM 1047

Query: 562  GMCKHGTLEEARKVFTNLRERKL-------------LTEANTIVYDEILIEHMKKK 604
            GMC +G    A +++  +R R L             ++ AN ++  E L+  ++++
Sbjct: 1048 GMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQER 1103



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 58/122 (47%)

Query: 182  GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
            G+  + + +L+ M R    P +  +T ++     +  +   L++   M+   ++ DV+AY
Sbjct: 983  GKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAY 1042

Query: 242  VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
              LIMG+C  G      EL+ EM+   +  +   Y VL++ +     + +   LL DL +
Sbjct: 1043 NVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQE 1102

Query: 302  SG 303
             G
Sbjct: 1103 RG 1104



 Score = 43.1 bits (100), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 42/209 (20%), Positives = 85/209 (40%), Gaps = 7/209 (3%)

Query: 163  SRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
            + N++F   ++     +S   + EMLE       N   P    Y  +I  +    ++   
Sbjct: 901  TYNHIFNGLNKKSAFRESTVVLHEMLE-------NGVIPKHAQYITLINGMCRVGDIQGA 953

Query: 223  LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
             ++ +EM+     +  +A   ++ GL   G+      +   M    +L   A +  L+  
Sbjct: 954  FKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHR 1013

Query: 283  LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
               + K+ +A  L   +   G + D+  YN +I G+C       A++L+E     DL P+
Sbjct: 1014 FCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPN 1073

Query: 343  FSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
             +T   L+   +    +    KLL  +++
Sbjct: 1074 ITTYAVLVDAISAANNLIQGEKLLTDLQE 1102



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 45/90 (50%)

Query: 181  QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
              +IAE L++   M     K DV AY  +I  + A  +  A   ++EEM+   +  ++  
Sbjct: 1017 DAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITT 1076

Query: 241  YVTLIMGLCKGGRVVRGHELFREMKENGIL 270
            Y  L+  +     +++G +L  +++E G++
Sbjct: 1077 YAVLVDAISAANNLIQGEKLLTDLQERGLI 1106


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 175/400 (43%), Gaps = 20/400 (5%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD+F +  +I        ++    +  ++ K   E D + + TLI GLC  G+V      
Sbjct: 101 PDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHF 160

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
              +   G  +D+  YG LI GL   G+   A  +L+ +     + ++ +YN+II  LC+
Sbjct: 161 HDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCK 220

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM-------EKLK 373
            K    AY+L+   +   ++PD  T + L+     +G+++  F L  +M       +   
Sbjct: 221 HKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYT 280

Query: 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
           F++  D        + KE  +  A ++   +  +G   +V  Y+ LM     + +V KA 
Sbjct: 281 FNILVD-------ALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAK 333

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           ++   +  +    N+ S+   I   C ++  D  EA    N +      P    YN L  
Sbjct: 334 HVLNTISQMGAAPNAHSYCTMINGFCKIKMVD--EALSLFNDMQFKGIAPDKVTYNSLID 391

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           GLCK G I  A  LV +   N       F Y   I  +C++   ++ I ++ ++  +G  
Sbjct: 392 GLCKSGRISYAWELVDEMHDN-GQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQ 450

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           P+    + +I G+CK G L+ A+ VF +L  +     A T
Sbjct: 451 PDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWT 490



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/434 (22%), Positives = 197/434 (45%), Gaps = 12/434 (2%)

Query: 177 LMDSQGRIAEM---LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
           L++    +AEM     ++ K+ +   +PD   +  +I+ L     +   L   + +    
Sbjct: 109 LINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALG 168

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
              D  +Y TLI GLCK G      ++ R++    + I+  +Y  +I+ L     V  A 
Sbjct: 169 FHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAY 228

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           +L   ++      D+  ++++I G C V Q ++A+ LF   V  ++ PD+ T N L+   
Sbjct: 229 ELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDAL 288

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS- 410
            + G +     +L  M  +K  V  ++  +   + G     ++  A  V   +   G + 
Sbjct: 289 CKEGNLKGAKNMLVVM--MKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAP 346

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           +   Y  ++    +I  V +AL LF  M+   +  + ++++  I    +SG I  A E  
Sbjct: 347 NAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELV 406

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
           +++ +  Q  ++  YNCL   LCK   +D A+ LV+  + +    P  + + + I  +C+
Sbjct: 407 DEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKK-IKDQGIQPDMYTFNILIYGLCK 465

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            G  +   +V  ++  +G   N    + +++G+CK G  +EA  + + + +  ++ +A T
Sbjct: 466 VGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVT 525

Query: 591 IVYDEILIEHMKKK 604
               E LI+ +  K
Sbjct: 526 Y---ETLIQALFHK 536



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 161/366 (43%), Gaps = 6/366 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G     L++L K+   L K +V  Y  +I  L   + +     ++ +M    +  DV+ +
Sbjct: 187 GETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTF 246

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI G C  G++     LFREM    I  D   + +L++ L  EG +  A ++L  ++ 
Sbjct: 247 SALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMK 306

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++  Y+S++ G C V Q +KA  +     Q   AP+  +   ++    ++  +D 
Sbjct: 307 EGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDE 366

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGY-SSVPIYNIL 418
              L   M+  K  +A D   +   + G  K  RI  A ++ +E+   G  +++  YN L
Sbjct: 367 ALSLFNDMQ-FK-GIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCL 424

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           + AL +   V +A+ L  K++   ++ +  +F+I I    + G +  A +    ++    
Sbjct: 425 IDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGY 484

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
             +   YN +  GLCK G  D A  L+     N    P    Y   I  +    E EK  
Sbjct: 485 SVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDN-GIIPDAVTYETLIQALFHKDENEKAE 543

Query: 539 EVLNEM 544
           ++L EM
Sbjct: 544 KLLREM 549



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 144/335 (42%), Gaps = 15/335 (4%)

Query: 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT 243
           + +  E+  +M      PDV  ++A+I        L+    ++ EM    +  D   +  
Sbjct: 224 VIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNI 283

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           L+  LCK G +     +   M + G++ +   Y  L++G     +V KA  +L  +   G
Sbjct: 284 LVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMG 343

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
              +   Y ++I G C++K  D+A  LF       +APD  T N L+    + GR+   +
Sbjct: 344 AAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAW 403

Query: 364 KLLAQMEK-------LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIY 415
           +L+ +M           ++   D        + K   +  A+ + +++K +G    +  +
Sbjct: 404 ELVDEMHDNGQPANIFTYNCLID-------ALCKNHHVDQAIALVKKIKDQGIQPDMYTF 456

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           NIL+  L ++G +K A  +F  +      VN+ +++I +    + G   EA    +K+ +
Sbjct: 457 NILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDD 516

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
              +P    Y  L + L    E + A  L+R+ + 
Sbjct: 517 NGIIPDAVTYETLIQALFHKDENEKAEKLLREMIA 551



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 159/367 (43%), Gaps = 11/367 (2%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           +  D+  +  LI   C    +     +  ++ + G   D   +  LI+GL   GKV +A 
Sbjct: 99  ITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEAL 158

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
                ++  G+  D   Y ++I GLC++ +   A ++        +  +    N ++   
Sbjct: 159 HFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSL 218

Query: 354 AEMGRMDNFFKLLAQMEKLKFS--VAADLEKFFEF-LVGKEERIMMALDVFEELKGKGYS 410
            +   + + ++L +QM   K S  V       + F +VG+ E    A  +F E+  K  +
Sbjct: 219 CKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEE---AFGLFREMVLKNIN 275

Query: 411 -SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
                +NIL+ AL + G +K A  +   M    +  N +++S  +  +     + +A   
Sbjct: 276 PDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHV 335

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
            N I +M   P+  +Y  +  G CKI  +D A+ L  D +      P +  Y   I  +C
Sbjct: 336 LNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFND-MQFKGIAPDKVTYNSLIDGLC 394

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL---LT 586
           +SG      E+++EM   G P N    + +I  +CK+  +++A  +   ++++ +   + 
Sbjct: 395 KSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMY 454

Query: 587 EANTIVY 593
             N ++Y
Sbjct: 455 TFNILIY 461



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 104/227 (45%), Gaps = 9/227 (3%)

Query: 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
            +L  + +    P+  +Y  MI      + +D  L ++ +M+   +  D + Y +LI GL
Sbjct: 334 HVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGL 393

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
           CK GR+    EL  EM +NG   +   Y  LI+ L     V +A  L+K + D G + D+
Sbjct: 394 CKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDM 453

Query: 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368
             +N +I GLC+V +   A  +F+  +    + +  T N ++    + G  D    LL++
Sbjct: 454 YTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSK 513

Query: 369 MEKLK-FSVAADLEKFFEFLVGKEE--------RIMMALDVFEELKG 406
           M+       A   E   + L  K+E        R M+A DV   L+G
Sbjct: 514 MDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREMIARDVVYALEG 560



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 11/198 (5%)

Query: 153 ASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRV 212
           A+ NA +YC   N   +              + E L +   M+     PD   Y ++I  
Sbjct: 344 AAPNAHSYCTMINGFCKIK-----------MVDEALSLFNDMQFKGIAPDKVTYNSLIDG 392

Query: 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           L     +     + +EM  +   A++  Y  LI  LCK   V +   L +++K+ GI  D
Sbjct: 393 LCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPD 452

Query: 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
              + +LI GL   G++  A D+ +DL+  GY  +   YN ++ GLC+   FD+A  L  
Sbjct: 453 MYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLS 512

Query: 333 VTVQDDLAPDFSTVNPLL 350
               + + PD  T   L+
Sbjct: 513 KMDDNGIIPDAVTYETLI 530



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/357 (18%), Positives = 159/357 (44%), Gaps = 4/357 (1%)

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318
            L R ++ +GI  D   + +LI       ++  A  ++  ++  GY  D   +N++I GL
Sbjct: 89  SLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGL 148

Query: 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA 378
           C   +  +A    +  +      D  +   L+    ++G      ++L +++     +  
Sbjct: 149 CLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINV 208

Query: 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGK 437
            +       + K + ++ A +++ ++  K  S  V  ++ L+     +G++++A  LF +
Sbjct: 209 VMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFRE 268

Query: 438 MRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497
           M   N+  +  +F+I +    + G++  A      +++   +P+V  Y+ L  G C + +
Sbjct: 269 MVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQ 328

Query: 498 IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557
           ++ A   V + +  + + P    Y   I   C+    ++ + + N+M  +G  P++V  +
Sbjct: 329 VNKAKH-VLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYN 387

Query: 558 AIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK 614
           ++I G+CK G +  A ++   + +      AN   Y+ ++    K    D  ++ +K
Sbjct: 388 SLIDGLCKSGRISYAWELVDEMHDNG--QPANIFTYNCLIDALCKNHHVDQAIALVK 442



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 81/160 (50%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GRI+   E++++M  N    ++F Y  +I  L    ++D  + + +++K   ++ D+  
Sbjct: 396 SGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYT 455

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  LI GLCK GR+    ++F+++   G  ++   Y +++ GL  EG   +A  LL  + 
Sbjct: 456 FNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMD 515

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340
           D+G   D   Y ++I  L    + +KA KL    +  D+ 
Sbjct: 516 DNGIIPDAVTYETLIQALFHKDENEKAEKLLREMIARDVV 555


>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
 gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
          Length = 695

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 108/496 (21%), Positives = 214/496 (43%), Gaps = 84/496 (16%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G +AE    L++M ++ C P+V +Y  +I      RN++  L    EM++        AY
Sbjct: 24  GMLAEAESYLKRMPQH-CAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAY 82

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +++   CK G V +  ++F EM   G   D   + VL+ GL    K+ +A +L + +  
Sbjct: 83  SSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNS 142

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G + D+  YN++I GLC+ K+ D+A  L E   Q+D++P F T   L+    +  R+  
Sbjct: 143 RGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFTRLQQ 202

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEER---IMMALDVFEELKGKG-------YSS 411
            +++    EK+     A  E  +  L  K +R   ++ A  V+ ++  K        YS 
Sbjct: 203 AYEVF---EKMAEGPCACTEPAYSVLFNKLQRAGKLVEASRVYSDMCRKNVCMTDNTYSL 259

Query: 412 VPI------------------------------YNILMGALLEIGEVKKALYLFGKMRGL 441
           V +                              Y+IL+  L +     +A  +F +MRG 
Sbjct: 260 VVLGLSKMDGGNVEAAKLVTEMMGKKIAPDFYAYSILINGLCKARRPGEAKEMFQEMRGR 319

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            +    ++++  ++  + +  + +A E    +++  ++P   +YN + +G C  G+ + A
Sbjct: 320 GISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQGRLPDTCSYNLMIRGFCANGDTNEA 379

Query: 502 MMLVRDCLGN-------------------------------VASG-------PTEFKYAL 523
             L +D + +                               + SG       P  F Y +
Sbjct: 380 YCLFQDMIKDGIVLNTWTYNFMIVGFIKDEAWSSAWMLFKRMQSGKNDKVPAPNMFTYEI 439

Query: 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER- 582
            I  +C++ + E+  ++L+ M  +G  P+  I   ++S + + G L++A +++  +    
Sbjct: 440 LISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRIN 499

Query: 583 -KLLTEANTIVYDEIL 597
            + L  ++ I+ D IL
Sbjct: 500 CQQLVGSSNILLDGIL 515



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 155/336 (46%), Gaps = 14/336 (4%)

Query: 182 GRIAEMLEILEKM-RRNLCKPDVFAYTAMIRVLAAER----NLDACLRVWEEMKKDLVEA 236
           G++ E   +   M R+N+C  D    T  + VL   +    N++A   V E M K  +  
Sbjct: 233 GKLVEASRVYSDMCRKNVCMTD---NTYSLVVLGLSKMDGGNVEAAKLVTEMMGKK-IAP 288

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           D  AY  LI GLCK  R     E+F+EM+  GI      Y  L+EGL+   K+  A +L 
Sbjct: 289 DFYAYSILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELT 348

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
             ++D G   D   YN +I G C     ++AY LF+  ++D +  +  T N ++V   + 
Sbjct: 349 YFMLDQGRLPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLNTWTYNFMIVGFIKD 408

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKF-FEFLVG---KEERIMMALDVFEELKGKGY-SS 411
               + + L  +M+  K         F +E L+    K +++  A  +   ++ KG+  S
Sbjct: 409 EAWSSAWMLFKRMQSGKNDKVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPS 468

Query: 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471
           + I+ +L+  L   G +  A  L+ +M  +N +    S +I +   +  G + EA +   
Sbjct: 469 LKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLK 528

Query: 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
           ++ +   VP    Y+ L  GLC  G+ D A  LV +
Sbjct: 529 QMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEE 564



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 105/467 (22%), Positives = 191/467 (40%), Gaps = 81/467 (17%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           +I E  E+   M    CKPDV  Y  MI  L   + LD  + + E MK++ V    + Y 
Sbjct: 129 KIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYT 188

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
           TLI  LCK  R+ + +E+F +M E         Y VL   L   GK+ +A  +  D+   
Sbjct: 189 TLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSVLFNKLQRAGKLVEASRVYSDMCRK 248

Query: 303 GYRADLGIYNSIIGGLCRVKQFD-KAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRM 359
                   Y+ ++ GL ++   + +A KL    +   +APDF   + L+  +C       
Sbjct: 249 NVCMTDNTYSLVVLGLSKMDGGNVEAAKLVTEMMGKKIAPDFYAYSILINGLC------- 301

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNIL 418
                                         K  R   A ++F+E++G+G S +V  YN L
Sbjct: 302 ------------------------------KARRPGEAKEMFQEMRGRGISPTVVTYNTL 331

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  LL   +++ A+ L   M       ++ S+++ I+    +GD  EA      +I+   
Sbjct: 332 LEGLLSTAKLQDAMELTYFMLDQGRLPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGI 391

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMML---VRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
           V +   YN +  G  K     +A ML   ++    +    P  F Y + I  +C++ + E
Sbjct: 392 VLNTWTYNFMIVGFIKDEAWSSAWMLFKRMQSGKNDKVPAPNMFTYEILISSLCKTDQVE 451

Query: 536 KIIEVLNEMTQEGCPPN----EVICS-------------------------------AII 560
           +  ++L+ M  +G  P+    EV+ S                                ++
Sbjct: 452 EAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILL 511

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
            G+ + G+++EA+     + +  ++ +  T  YD++++    +  AD
Sbjct: 512 DGILRRGSVDEAKDFLKQMTDTGIVPDKFT--YDKLVVGLCWQGKAD 556



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 102/225 (45%), Gaps = 6/225 (2%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           ++ E  ++L  MR     P +  +  ++  LA    LD    +++EM +   +  V +  
Sbjct: 449 QVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSN 508

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            L+ G+ + G V    +  ++M + GI+ D+  Y  L+ GL  +GK  +A  L+++LV  
Sbjct: 509 ILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRD 568

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G R +      ++G LC    F  AY+ +       +       N L+  C  + R  ++
Sbjct: 569 GKRPENQGLRQLLGALCAQGDFQGAYEFYCWLPSVGVEVTLGMHNTLVTSCC-LARKLDY 627

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK 407
             ++ Q E +   +   +EKF   L  +EE     + ++EE + +
Sbjct: 628 LDMIEQREGVPDVIVERIEKFRAELFREEE-----VKIYEETRDR 667



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 2/107 (1%)

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           ++E    P+   YN L   LCK G +  A   ++    + A  P    Y + I   C++ 
Sbjct: 1   MLEAGLFPNAILYNNLISCLCKAGMLAEAESYLKRMPQHCA--PNVVSYNIIIDGYCKAR 58

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             EK +  L EM + G PP     S+I+   CK G + +A  VF  +
Sbjct: 59  NIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEM 105


>gi|218196531|gb|EEC78958.1| hypothetical protein OsI_19424 [Oryza sativa Indica Group]
          Length = 975

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 146/628 (23%), Positives = 254/628 (40%), Gaps = 114/628 (18%)

Query: 76  PKTFQLQRHLSP------------IARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVA 123
           P++F      SP            +A  + D F +      P+   + ++LRR+  +L A
Sbjct: 18  PRSFSFSTSASPPPRAPVPASPSYLAHHLLDEFSR------PRATRDAARLRRLAAELTA 71

Query: 124 ----EVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRN---NLFR-AADQV- 174
                VL    +   A  FF WA  Q G++H+  S NA+A  L R+   +L R AAD + 
Sbjct: 72  PAAESVLLRLPSWRHALDFFRWAADQPGFRHSCYSLNAMASLLPRHQRAHLDRLAADAIS 131

Query: 175 PELMDSQGRIAEMLEIL-------------EKMRRNL-CKPDVFAYTAMIRVLA-AERNL 219
              + + G +  +L  L             +  R +  C P+ + Y  ++  LA A R  
Sbjct: 132 ARCLMTPGALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRAD 191

Query: 220 DACLRVWEEMKK-----------------------------------DLVEADVMAYVTL 244
           DA  R+ E + +                                   +L   D     TL
Sbjct: 192 DAQARLREMVARCGDGSVDKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHVLTTL 251

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           ++   K G+V    EL   M+  G+ +      VL+ G   +G+V KA D+   +V  G+
Sbjct: 252 MVAFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGF 311

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP----------------DFSTVNP 348
             DL +Y+ +I GLC+ K   +A KLF+      +AP                DF+ + P
Sbjct: 312 VVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDFAVIGP 371

Query: 349 LLVCCAEMGRMDNFFKLL-AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK 407
            +   AE  +  +   L    +E+L      ++E  ++ L      +     V  ++ G 
Sbjct: 372 FINENAEYLKSGSVVPLYNVVLEELVH--CGEVEAAYQLL---RSMVCGGQAVNNDVAGG 426

Query: 408 GY---------SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV 458
            +          +   +NI++  L ++ ++  AL L   M  L  +   L F+  I    
Sbjct: 427 AHMLHIREDAKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELC 486

Query: 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE 518
               + E     N++ ++   PS   YN L  G+C+     AA+ L+R+   N    P  
Sbjct: 487 NMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKYPKAALDLLREMQTN--GHPPW 544

Query: 519 FKYALTIL-HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
            K    ++  +C SG   + ++ L+ M Q G  P+ V  SA ++GMC  G +++A  +F 
Sbjct: 545 IKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFR 604

Query: 578 NLRERKLLTEANTIVYDEILIEHMKKKT 605
           ++  +  L +   +V   ILI   +K +
Sbjct: 605 DISCKYYLPD---VVAHNILINGFRKSS 629



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 103/503 (20%), Positives = 194/503 (38%), Gaps = 92/503 (18%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++   +E+L  M     +      + ++     +  +D  + ++ +M       D+  Y
Sbjct: 259 GKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMY 318

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGI-----LIDRAI--------------------- 275
             LI GLC+   + R  +LF+EMK +G+     L+ + I                     
Sbjct: 319 SVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDFAVIGPFINENAE 378

Query: 276 ----------YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI--------------- 310
                     Y V++E LV  G+V  A  LL+ +V  G   +  +               
Sbjct: 379 YLKSGSVVPLYNVVLEELVHCGEVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHIREDAKP 438

Query: 311 ----YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
               +N ++ GLC+VK+ D A  L +  +           N L+     M R++  + + 
Sbjct: 439 NSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGYGIF 498

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY----------------- 409
            QM+ L  + +        + + + +    ALD+  E++  G+                 
Sbjct: 499 NQMKDLGLTPSEFTYNSLFYGICRRKYPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFS 558

Query: 410 -------------------SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
                                +  Y+  M  +   GEV  AL+LF  +       + ++ 
Sbjct: 559 GRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVAH 618

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +I I    +S  + EA +   +++E    PSV  YN +    CK G I+ A+  + D + 
Sbjct: 619 NILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYL-DKMV 677

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
                PT   Y   I   C +G  ++ I++  EM ++GC PN +  +A I+G+ K G +E
Sbjct: 678 YEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIE 737

Query: 571 EARKVFTNLRERKLLTEANTIVY 593
            A   F  +  +    +  +++Y
Sbjct: 738 TALTYFEEMVTKGFELDTFSLLY 760



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 153/378 (40%), Gaps = 7/378 (1%)

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
           A ML I E       KP+  ++  ++  L   + LD  L + ++M     +  ++ +  L
Sbjct: 427 AHMLHIRED-----AKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDL 481

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I  LC   R+  G+ +F +MK+ G+      Y  L  G+        A DLL+++  +G+
Sbjct: 482 IHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKYPKAALDLLREMQTNGH 541

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
              +     ++  LC   +  +A +  +  +Q    PD  T +  +      G +D+   
Sbjct: 542 PPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALH 601

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALL 423
           L   +    +               K  ++  A  + EE+  KG + SV  YN+++    
Sbjct: 602 LFRDISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCC 661

Query: 424 EIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA 483
           + G ++KA+    KM     +   ++++  I     +G   EA +   ++ E    P+  
Sbjct: 662 KTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNI 721

Query: 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543
           AY     GL K G I+ A+    + +       T F     I  +  +G   K  E+L E
Sbjct: 722 AYTAFINGLRKCGRIETALTYFEEMVTKGFELDT-FSLLYFINFLISNGHPMKGCELLKE 780

Query: 544 MTQEGCPPNEVICSAIIS 561
           + Q+    N +    +I+
Sbjct: 781 VLQKDTYGNNLKMVGLIN 798



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 1/209 (0%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            GR+ E ++ L+ M +    PD+  Y+A +  +     +D  L ++ ++       DV+A
Sbjct: 558 SGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVA 617

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           +  LI G  K  ++    ++  EM E G+      Y ++I+     G++ KA   L  +V
Sbjct: 618 HNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMV 677

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
               +  +  Y S+I G C   + D+A KL+    +   AP+       +    + GR++
Sbjct: 678 YEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIE 737

Query: 361 NFFKLLAQMEKLKFSVAA-DLEKFFEFLV 388
                  +M    F +    L  F  FL+
Sbjct: 738 TALTYFEEMVTKGFELDTFSLLYFINFLI 766



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 57/119 (47%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI + +  L+KM     +P V  YT++I    +    D  +++W EM++     + +AY
Sbjct: 664 GRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAY 723

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
              I GL K GR+      F EM   G  +D       I  L+  G   K C+LLK+++
Sbjct: 724 TAFINGLRKCGRIETALTYFEEMVTKGFELDTFSLLYFINFLISNGHPMKGCELLKEVL 782



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 7/140 (5%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S GR  E +++  +MR   C P+  AYTA I  L     ++  L  +EEM     E D  
Sbjct: 697 SAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEMVTKGFELDTF 756

Query: 240 AYVTLIMGLCKGGRVVRGHELFRE-MKENGILIDRAIYGVLIEGLVGEGKVG-KACDLLK 297
           + +  I  L   G  ++G EL +E ++++    +  + G++ E +V   K G  + D+LK
Sbjct: 757 SLLYFINFLISNGHPMKGCELLKEVLQKDTYGNNLKMVGLINEAVVELSKDGITSSDILK 816

Query: 298 DLVDSGYRADLGIYNSIIGG 317
             VD  Y       NS++ G
Sbjct: 817 -FVDKAYTG----VNSVVPG 831


>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 638

 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 181/382 (47%), Gaps = 27/382 (7%)

Query: 117 VTPDLVAEVL-KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA---- 171
           + P L+  VL +  +   L  +FF WA KQ  Y H+   Y ++   LS+   F A     
Sbjct: 112 LRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLI 171

Query: 172 ----DQVPELMD------------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215
                + P+L++            S   + + +E+L++M     +PD + +  ++  L  
Sbjct: 172 EEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPTFGLEPDEYVFGCLLDALCK 231

Query: 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275
             ++    +++E+M+      ++  + +L+ G C+  +++    +  +MKE G   D   
Sbjct: 232 HGSVKDAAKLFEDMRLRF-PVNLRYFTSLLYGWCREEKMMEAKYVLVQMKEAGFEPDIVD 290

Query: 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335
           Y  L+ G    GK+  A DLLKD+   G+  +   Y  +I  LC+V + ++A K+F    
Sbjct: 291 YTNLLSGYANAGKMADAYDLLKDMRRRGFEPNATCYTVLIQALCKVDRMEEAMKVFVEME 350

Query: 336 QDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEER 393
           + +   D  T   L+    + G++D  + +L  M  +K  +      +   +    K+E+
Sbjct: 351 RYECEADVVTYTALVSGFCKWGKIDKCYLVLDDM--IKKGLMPSQLTYMHIMAAHEKKEK 408

Query: 394 IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452
           ++  L++ E++K   Y   + IYN+++    ++GEVK+A+ L+ +M G  L   + +F I
Sbjct: 409 LIECLELMEKMKQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEGNGLSPGADTFVI 468

Query: 453 AIQCHVESGDILEACECHNKII 474
            I      G +LEAC+   +++
Sbjct: 469 IINGLTSQGCLLEACDHFKEMV 490



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 152/349 (43%), Gaps = 24/349 (6%)

Query: 205 AYTAMIRVLAAERNLDACLRVWEEMKKD---LVEADVMAYVTLIMGLCKGGRVVRGHELF 261
            Y +M+++L+  R   A   + EEM+K+   L+E ++  +V L+        V +  E+ 
Sbjct: 150 VYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPEL--FVVLVQRFASADMVKKAIEVL 207

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            EM   G+  D  ++G L++ L   G V  A  L +D+    +  +L  + S++ G CR 
Sbjct: 208 DEMPTFGLEPDEYVFGCLLDALCKHGSVKDAAKLFEDM-RLRFPVNLRYFTSLLYGWCRE 266

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
           ++  +A  +     +    PD      LL   A  G+M + + LL  M +  F   A   
Sbjct: 267 EKMMEAKYVLVQMKEAGFEPDIVDYTNLLSGYANAGKMADAYDLLKDMRRRGFEPNATCY 326

Query: 382 KFFEFLVGKEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440
                 + K +R+  A+ VF E+ + +  + V  Y  L+    + G++ K   +   M  
Sbjct: 327 TVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYLVLDDMIK 386

Query: 441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
             L  + L++   +  H +   ++E  E   K+ ++   P +  YN + +  CK+GE+  
Sbjct: 387 KGLMPSQLTYMHIMAAHEKKEKLIECLELMEKMKQIEYHPDIGIYNVVIRLACKLGEVKE 446

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
           A+ L  +  GN  S                   A+  + ++N +T +GC
Sbjct: 447 AVRLWNEMEGNGLSPG-----------------ADTFVIIINGLTSQGC 478



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 149/344 (43%), Gaps = 41/344 (11%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G++A+  ++L+ MRR   +P+   YT +I+ L     ++  ++V+ EM++   EADV+ Y
Sbjct: 302 GKMADAYDLLKDMRRRGFEPNATCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTY 361

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             L+ G CK G++ + + +  +M + G++  +  Y  ++     + K+ +  +L++ +  
Sbjct: 362 TALVSGFCKWGKIDKCYLVLDDMIKKGLMPSQLTYMHIMAAHEKKEKLIECLELMEKMKQ 421

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
             Y  D+GIYN +I   C++ +  +A +L+     + L+P   T   ++      G    
Sbjct: 422 IEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEGNGLSPGADTFVIIINGLTSQG---- 477

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNI---- 417
                                           ++ A D F+E+  +G  SVP Y      
Sbjct: 478 -------------------------------CLLEACDHFKEMVARGLFSVPQYGTLKLL 506

Query: 418 -LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
                  +  E+ K ++     +G + E++  S++I I      G   EAC    ++IE+
Sbjct: 507 LNTLLKDKKLEMAKDVWSCITSKG-SCELSVSSWTIWIHALFSKGYEKEACSYCLEMIEL 565

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
             +P    +  L KGL K+   + A+ +        A     FK
Sbjct: 566 EFMPQPDTFAKLMKGLKKLYHREFAVEITEKVRNMAAEKEMSFK 609



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE---KI 537
           S+  Y  + K L K+ +  A   L+ +        P   +  L ++ V R   A+   K 
Sbjct: 147 SIEVYKSMVKILSKMRQFGAVWGLIEEMR---KENPQLIEPELFVVLVQRFASADMVKKA 203

Query: 538 IEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           IEVL+EM   G  P+E +   ++  +CKHG++++A K+F ++R R
Sbjct: 204 IEVLDEMPTFGLEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRLR 248



 Score = 45.4 bits (106), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 48/92 (52%)

Query: 179 DSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV 238
           + + ++ E LE++EKM++    PD+  Y  +IR+      +   +R+W EM+ + +    
Sbjct: 404 EKKEKLIECLELMEKMKQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEGNGLSPGA 463

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
             +V +I GL   G ++   + F+EM   G+ 
Sbjct: 464 DTFVIIINGLTSQGCLLEACDHFKEMVARGLF 495


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 190/427 (44%), Gaps = 17/427 (3%)

Query: 180 SQGRIAEMLEILEKMRRNL---CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           ++ R  E LE+L  M  +    C P+V +Y+ +I     E  +D    ++ EM    +  
Sbjct: 177 NEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPP 236

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           DV+ Y T+I GLCK     R   +F++M +NG+  +   Y  LI G +  GK  +   +L
Sbjct: 237 DVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRML 296

Query: 297 KDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
           +++   G + +   Y S++  LC+  +  +A   F+  +   + P  +T   +L   A  
Sbjct: 297 EEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATK 356

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI-Y 415
           G +     LL  M     S    +   F     K   I  A+D+F +++ +G S   + Y
Sbjct: 357 GALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSY 416

Query: 416 NILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
             L+ AL ++G V  A   F +M   G+  ++   S  +   C V+  + +E  E   ++
Sbjct: 417 GALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVE--ELFFEM 474

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           + +   P++  +N +   LCK G +     LV D +  +   P    Y   I   C +G 
Sbjct: 475 LNVGIHPNIVFFNTILCNLCKEGRVMEGQRLV-DSIECMGVRPDVISYNTLIDGHCLAGT 533

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT--- 590
            ++  ++L  M   G  P+    + ++ G CK G ++ A   F     RK+L+   T   
Sbjct: 534 IDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHF-----RKMLSNGITPGV 588

Query: 591 IVYDEIL 597
           + Y+ IL
Sbjct: 589 VTYNTIL 595



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 179/412 (43%), Gaps = 41/412 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I + ++I  KMR+    PD  +Y A+I  L     +D     + +M  + V  D++ +
Sbjct: 392 GIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVF 451

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
            +L+ GLC   +  +  ELF EM   GI  +   +  ++  L  EG+V +   L+  +  
Sbjct: 452 SSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIEC 511

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G R D+  YN++I G C     D+A KL E  V   L PD  + N LL    + GR+D+
Sbjct: 512 MGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDS 571

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
            +    +M  L   +   +  +   L G  + +R   A +++  +   G    +  YNI+
Sbjct: 572 AYSHFRKM--LSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNII 629

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +  L +   V +A+ +F  +    L++N ++F+I I      G +L+     + +   + 
Sbjct: 630 LNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMI------GALLKGGRKEDAMDLFAA 683

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538
           +P+         GL +                NV +      Y L + ++   G  E+  
Sbjct: 684 IPA--------NGLVQ----------------NVVT------YRLVVENLIEEGSLEEFD 713

Query: 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            + + M + G  PN  + +A++  +   G +  A    + L ER    EA+T
Sbjct: 714 SLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEAST 765



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 100/442 (22%), Positives = 190/442 (42%), Gaps = 36/442 (8%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ E   +++ +     +PDV +Y  +I        +D   ++ E M    ++ D  +
Sbjct: 496 EGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFS 555

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TL+ G CK GR+   +  FR+M  NGI      Y  ++ GL    +  +A +L  +++
Sbjct: 556 YNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMI 615

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
           +SG + D+  YN I+ GLC+    D+A K+F+      L  +  T N ++    + GR +
Sbjct: 616 NSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKE 675

Query: 361 NFFKLLAQM--EKLKFSVAADLEKFFEFLVGKEERIMMALD-VFEELKGKGYS-SVPIYN 416
           +   L A +    L  +V        E L+  EE  +   D +F  ++  G + +  + N
Sbjct: 676 DAMDLFAAIPANGLVQNVVT-YRLVVENLI--EEGSLEEFDSLFSAMEKNGTAPNSQMLN 732

Query: 417 ILMGALLEIGEVKKALYLFGKM--RGLNLEVNSLSFSIAI------QCHVES-------- 460
            L+  LL  G++ +A     K+  R  ++E ++ S  I+I      Q H +S        
Sbjct: 733 ALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRIL 792

Query: 461 ------------GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508
                         I +A     +++     P V  YN +  GL + G    A  L    
Sbjct: 793 NEANSSALIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSM 852

Query: 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
           + N  +    + Y + +  +C+S   ++  ++   +  +G   N +  + +I  + K G 
Sbjct: 853 I-NSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGR 911

Query: 569 LEEARKVFTNLRERKLLTEANT 590
            E+A  +F  +    L+ +  T
Sbjct: 912 KEDAMDLFAAIPANGLVPDVVT 933



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 153/347 (44%), Gaps = 10/347 (2%)

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD-LLKD 298
            Y  LI   C+ G +  G   F  + + G  +D  +   L+ GL    +VG+A D LL+ 
Sbjct: 96  TYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDVLLQR 155

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL---APDFSTVNPLLVCCAE 355
           + + G   D   YN ++ GLC  K+ ++A +L  +   D +    P+  + + ++     
Sbjct: 156 MPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFT 215

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SV 412
            G++D  + L  +M  +   +  D+  +   + G  K +    A  VF+++   G   ++
Sbjct: 216 EGQVDKPYNLFLEM--MDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNI 273

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             YN L+   L IG+ K+ + +  +M     + N  ++   +    ++G   EA    + 
Sbjct: 274 DTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDS 333

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           +I     PSV  Y  +  G    G +     L+   + N  S P    + +      + G
Sbjct: 334 MIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGIS-PNHHIFNIFFSAYAKCG 392

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             +K +++ N+M Q+G  P+ V   A+I  +CK G +++A   F  +
Sbjct: 393 IIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQM 439



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/382 (18%), Positives = 137/382 (35%), Gaps = 64/382 (16%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           GRI        KM  N   P V  Y  ++  L   +       ++  M     + D+  Y
Sbjct: 567 GRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTY 626

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             ++ GLCK   V    ++F+ +   G+ ++   + ++I  L+  G+   A DL   +  
Sbjct: 627 NIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPA 686

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G   ++  Y  ++  L      ++   LF    ++  AP+   +N L+      G +  
Sbjct: 687 NGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISR 746

Query: 362 FFKLLAQMEKLKFSVAADLEKFF----------------------------EFLVGKEER 393
               L+++++  FSV A                                    L+ K  R
Sbjct: 747 AGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARR 806

Query: 394 IMMALDVFEELKGKGYS------------------------------------SVPIYNI 417
           I  A  +F E+  KG +                                    ++  YNI
Sbjct: 807 IDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNI 866

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477
           ++  L +   V +A  +F  +    L++N ++F+I I   ++ G   +A +    I    
Sbjct: 867 ILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANG 926

Query: 478 QVPSVAAYNCLTKGLCKIGEID 499
            VP V  Y  + + L + G ++
Sbjct: 927 LVPDVVTYRLVAENLIEEGSLE 948



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 70/155 (45%)

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
           R +D    ++ EM    +  DV+ Y T++ GL + GR     EL+  M  +   ++   Y
Sbjct: 805 RRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTY 864

Query: 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
            +++ GL     V +A  + + L   G + ++  +N +IG L +  + + A  LF     
Sbjct: 865 NIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPA 924

Query: 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
           + L PD  T   +     E G ++ F  L   MEK
Sbjct: 925 NGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEK 959



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/345 (20%), Positives = 136/345 (39%), Gaps = 39/345 (11%)

Query: 193 KMRRNLCKP----DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL 248
           KM +NLC      ++  +  MI  L      +  + ++  +  + +  +V+ Y  ++  L
Sbjct: 644 KMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENL 703

Query: 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308
            + G +     LF  M++NG   +  +   L+  L+  G + +A   L  L +  +  + 
Sbjct: 704 IEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEA 763

Query: 309 GIYNSIIGGLC----------------------------RVKQFDKAYKLFEVTVQDDLA 340
              + +I                                + ++ D AY LF   +   L 
Sbjct: 764 STTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARRIDDAYSLFREMLMKGLT 823

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMAL 398
           PD  T N +L    + GR     +L   M  +      ++  +   L G  K   +  A 
Sbjct: 824 PDVVTYNTILHGLFQTGRFSEAKELYLSM--INSRTQMNIYTYNIILNGLCKSNCVDEAF 881

Query: 399 DVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
            +F+ L  KG   ++  +NI++GALL+ G  + A+ LF  +    L  + +++ +  +  
Sbjct: 882 KMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENL 941

Query: 458 VESGDILEACECHNKIIEMSQVP-SVAAYNCLTKGLCKIGEIDAA 501
           +E G  LE  +     +E S  P      N L + L + G+I  A
Sbjct: 942 IEEGS-LEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRA 985



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 87/202 (43%), Gaps = 14/202 (6%)

Query: 397 ALDVFEELKGKGY-SSVPIYNILMGALLE-------IGEVKKALYLFGKM-RGLNLEV-- 445
           AL +F+EL      +SV  +N L+ A+           E +  + LF +M R   ++V  
Sbjct: 33  ALKLFDELLPHARPASVVAFNHLLAAVSRSSGRRSTTSESETVVSLFNRMVRDCYIKVAP 92

Query: 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
           N  ++SI I C    G +         I++          N L  GLC    +  AM ++
Sbjct: 93  NRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDVL 152

Query: 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE---GCPPNEVICSAIISG 562
              +  +   P    Y + +  +C    AE+ +E+L+ M  +    CPPN V  S +I+G
Sbjct: 153 LQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVING 212

Query: 563 MCKHGTLEEARKVFTNLRERKL 584
               G +++   +F  + +R +
Sbjct: 213 FFTEGQVDKPYNLFLEMMDRGI 234



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/169 (20%), Positives = 78/169 (46%)

Query: 182  GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
            GR +E  E+   M  +  + +++ Y  ++  L     +D   ++++ +    ++ +++ +
Sbjct: 840  GRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITF 899

Query: 242  VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
              +I  L KGGR     +LF  +  NG++ D   Y ++ E L+ EG + +   L   +  
Sbjct: 900  NIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEK 959

Query: 302  SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
            SG   D  + N+++  L +     +A        + + + + ST + L+
Sbjct: 960  SGTPLDSRLLNALVRRLLQRGDISRAGAYLSKLDEKNFSLEASTTSELI 1008


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 151/346 (43%), Gaps = 37/346 (10%)

Query: 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294
           + DV  Y T+I GLCK G  V    LF++M E G   D   Y  +I+ L  + +V +A D
Sbjct: 7   QPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALD 66

Query: 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354
           +   +   G   ++  YNS+I GLC   ++ +A  +    +  ++ P+  T + L+    
Sbjct: 67  IFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLI---- 122

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVP 413
                 N F                          KE  +  A  V + +   G   +V 
Sbjct: 123 ------NIF-------------------------CKEGNVFEARGVLKTMTEMGVEPNVV 151

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            Y+ LM       EV +A  LF  M     + +  S++I I  + ++  I EA +  N++
Sbjct: 152 TYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEM 211

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533
           I     P + +YN L  GLC++G +  A  L ++ L N  + P    Y++ +   C+ G 
Sbjct: 212 IHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTN-GNLPDLCTYSILLDGFCKQGY 270

Query: 534 AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             K   +   M      PN V+ + +I  MCK   L+EARK+F+ L
Sbjct: 271 LAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSEL 316



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 85/162 (52%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           Q  + E  ++ + M    CKPDVF+Y  +I      + +    +++ EM    +  D+++
Sbjct: 163 QAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVS 222

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y TLI GLC+ GR+   H+LF+ M  NG L D   Y +L++G   +G + KA  L + + 
Sbjct: 223 YNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQ 282

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
            +  + ++ +YN +I  +C+ +   +A KLF       L P+
Sbjct: 283 STYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPN 324



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 131/280 (46%), Gaps = 5/280 (1%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           + +KM    C+PDV  Y+ +I  L  +R ++  L ++  MK   +  ++  Y +LI GLC
Sbjct: 32  LFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLC 91

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
              R      +  EM    I+ +   + +LI     EG V +A  +LK + + G   ++ 
Sbjct: 92  NFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVV 151

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
            Y+S++ G     +  +A KLF+V +     PD  + N L+    +  R+    +L  +M
Sbjct: 152 TYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEM 211

Query: 370 EKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIG 426
             +   +  D+  +   + G  +  R+  A D+F+ +   G    +  Y+IL+    + G
Sbjct: 212 --IHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQG 269

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
            + KA  LF  M+   L+ N + ++I I    +S ++ EA
Sbjct: 270 YLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEA 309



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 148/367 (40%), Gaps = 83/367 (22%)

Query: 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEM 356
           +V  GY+ D+  Y +II GLC++ +   A  LF+   +    PD  T + ++  +C    
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLC---- 56

Query: 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIY 415
                                            K+ R+  ALD+F  +K KG S ++  Y
Sbjct: 57  ---------------------------------KDRRVNEALDIFSYMKAKGISPNIFTY 83

Query: 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
           N L+  L      ++A  +  +M  LN+  N ++FS+ I    + G++ EA      + E
Sbjct: 84  NSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTE 143

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
           M   P+V  Y+ L  G     E+  A  L  D +      P  F Y + I   C++    
Sbjct: 144 MGVEPNVVTYSSLMNGYSLQAEVFEARKLF-DVMITKGCKPDVFSYNILINGYCKAKRIG 202

Query: 536 KIIEVLNEMTQEGCPPNEV---------------------------------IC--SAII 560
           +  ++ NEM  +G  P+ V                                 +C  S ++
Sbjct: 203 EAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILL 262

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK----KTADLVLSGLKFF 616
            G CK G L +A ++F  ++   L  + N ++Y+ ILI+ M K    K A  + S L   
Sbjct: 263 DGFCKQGYLAKAFRLFRAMQSTYL--KPNMVMYN-ILIDAMCKSRNLKEARKLFSELFVQ 319

Query: 617 GLESKLK 623
           GL+  +K
Sbjct: 320 GLQPNMK 326



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 19/226 (8%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFR-AADQVPELMD------------------SQGRI 184
           K KG   N  +YN+L   L   + +R A+  + E+M                    +G +
Sbjct: 72  KAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNV 131

Query: 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244
            E   +L+ M     +P+V  Y++++   + +  +    ++++ M     + DV +Y  L
Sbjct: 132 FEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNIL 191

Query: 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
           I G CK  R+    +LF EM   G+  D   Y  LI+GL   G++ +A DL K+++ +G 
Sbjct: 192 INGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGN 251

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
             DL  Y+ ++ G C+     KA++LF       L P+    N L+
Sbjct: 252 LPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILI 297



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 117/259 (45%), Gaps = 5/259 (1%)

Query: 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
           R+ E L+I   M+     P++F Y ++I+ L           +  EM    +  +++ + 
Sbjct: 60  RVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFS 119

Query: 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
            LI   CK G V     + + M E G+  +   Y  L+ G   + +V +A  L   ++  
Sbjct: 120 LLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITK 179

Query: 303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
           G + D+  YN +I G C+ K+  +A +LF   +   L PD  + N L+    ++GR+   
Sbjct: 180 GCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREA 239

Query: 363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILM 419
             L   M  L      DL  +   L G  K+  +  A  +F  ++      ++ +YNIL+
Sbjct: 240 HDLFKNM--LTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILI 297

Query: 420 GALLEIGEVKKALYLFGKM 438
            A+ +   +K+A  LF ++
Sbjct: 298 DAMCKSRNLKEARKLFSEL 316


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 104/459 (22%), Positives = 203/459 (44%), Gaps = 45/459 (9%)

Query: 144 KQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203
           ++ G + N  +YN+L Y L ++                 ++ + + +L KM+++   P+V
Sbjct: 374 ERDGCQPNAWTYNSLMYGLVKDK----------------KLHKAMALLTKMQKDGIIPNV 417

Query: 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263
             YT +++    E + D   R++E M+++ ++ D  AY  L   LCK GR     E +  
Sbjct: 418 ITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGR---AEEAYSF 474

Query: 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +   G+ + +  Y  LI+G    G    A  L++ ++D G   D   Y+ ++  LC+ K+
Sbjct: 475 IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKR 534

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM---GRMDNFFKLLAQMEKLKFSVAADL 380
            ++A  + +   Q  L     T+    +   EM   G+ D+  ++  +M       +A  
Sbjct: 535 LNEALPILD---QMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATT 591

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
              F     KE R+  A D+  +++ +G +  V  YNIL+     +G + +A     +M 
Sbjct: 592 YTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMV 651

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILE-----------------ACECHNKIIEMSQVPSV 482
           G + E N  ++ + ++ H+  G++                     +   ++++    P+V
Sbjct: 652 GASCEPNYWTYCLLLK-HLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTV 710

Query: 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542
             Y+ L  G CK G ++ A +L+    G   S P E  Y L I   C +   EK +  ++
Sbjct: 711 TTYSSLIAGFCKAGRLEEACLLLDHMCGKGLS-PNEDIYTLLIKCCCDTKFFEKALSFVS 769

Query: 543 EMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            M++ G  P       ++ G+C  G  E+ + +F +L E
Sbjct: 770 IMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLE 808



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 122/466 (26%), Positives = 205/466 (43%), Gaps = 63/466 (13%)

Query: 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258
           C+ + ++YT +I+ L   + +   L ++  MK+D    +V A+  LI GLCK GRV    
Sbjct: 134 CQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDAR 193

Query: 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL--KDLVD-SGYRADLGIYNSII 315
            LF  M +NG++     Y  +I   VG  K+G+  D L  K+L++ +G   D   YN++I
Sbjct: 194 LLFDAMPQNGVVPSVMTYNAMI---VGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLI 250

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQMEKLK 373
            GLC  K  ++A +L    V++   P   T   L+   C AE  + D+  ++  +M   K
Sbjct: 251 YGLCDQKT-EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAE--KFDDALRMKNKMMSSK 307

Query: 374 FSVAADLEKFFEFL--VGKEERIMMALDVFEELKGKG-------YSSVP----------- 413
             +  DL+ F + +  + K++R+  A ++  E+   G       Y+S+            
Sbjct: 308 CKL--DLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDI 365

Query: 414 ------------------IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
                              YN LM  L++  ++ KA+ L  KM+   +  N ++++  +Q
Sbjct: 366 ALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQ 425

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-MLVRDCLGNVAS 514
              +  D   A      + +    P   AY  LT  LCK G  + A   +VR        
Sbjct: 426 GQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRK-----GV 480

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
             T+  Y   I    ++G  +    ++  M  EGC P+    S ++  +CK   L EA  
Sbjct: 481 ALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALP 540

Query: 575 VF--TNLRERKLLTEANTIVYDEILIE----HMKKKTADLVLSGLK 614
           +    +LR  K    A TI+ DE+L E    H K+   ++  SG K
Sbjct: 541 ILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHK 586



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/425 (24%), Positives = 192/425 (45%), Gaps = 21/425 (4%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA----D 237
           GR+ + L+I E M +N C PD + Y  +I  L  ++  +A     EE+  + V+      
Sbjct: 222 GRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEA-----EELLNNAVKEGFTPT 276

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           V+ +  LI G C   +      +  +M  +   +D  ++G LI  L+ + ++ +A +LL 
Sbjct: 277 VVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLN 336

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
           ++  +G   ++  Y SII G C+  + D A ++ ++  +D   P+  T N L+    +  
Sbjct: 337 EISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDK 396

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK--EERIMMALDVFEELKGKGYS-SVPI 414
           ++     LL +M+K    +  ++  +   L G+  E     A  +FE ++  G       
Sbjct: 397 KLHKAMALLTKMQK--DGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHA 454

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           Y +L  AL + G  ++A Y F   +G+ L    + ++  I    ++G+   A     ++I
Sbjct: 455 YAVLTDALCKAGRAEEA-YSFIVRKGVAL--TKVYYTTLIDGFSKAGNTDFAATLIERMI 511

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
           +    P    Y+ L   LCK   ++ A+ ++ D +       T F Y + I  + R G+ 
Sbjct: 512 DEGCTPDSYTYSVLLHALCKQKRLNEALPIL-DQMSLRGIKCTIFAYTILIDEMLREGKH 570

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYD 594
           +    + NEMT  G  P+    +  I+  CK G LE+A  +   +    +   A  +V  
Sbjct: 571 DHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGV---APDVVTY 627

Query: 595 EILIE 599
            ILI+
Sbjct: 628 NILID 632



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 169/390 (43%), Gaps = 13/390 (3%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           PD   Y  MI+    E +L    R +  + +  +E +      L++G C+ G + +   L
Sbjct: 66  PDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWL 125

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           F  M   G   +   Y +LI+GL     V KA  L   +   G   ++  +  +I GLC+
Sbjct: 126 FLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCK 185

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
             +   A  LF+   Q+ + P   T N ++V  +++GRM++  K+   ME  K     D 
Sbjct: 186 SGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELME--KNGCHPDD 243

Query: 381 EKFFEFLVGK-EERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKM 438
             +   + G  +++   A ++      +G++ +V  +  L+       +   AL +  KM
Sbjct: 244 WTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKM 303

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
                +++   F   I   ++   + EA E  N+I     VP+V  Y  +  G CK G++
Sbjct: 304 MSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKV 363

Query: 499 DAAM----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
           D A+    M+ RD        P  + Y   +  + +  +  K + +L +M ++G  PN +
Sbjct: 364 DIALEVLKMMERD-----GCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVI 418

Query: 555 ICSAIISGMCKHGTLEEARKVFTNLRERKL 584
             + ++ G C     + A ++F  + +  L
Sbjct: 419 TYTTLLQGQCDEHDFDNAFRLFEMMEQNGL 448



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 136/335 (40%), Gaps = 21/335 (6%)

Query: 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
           ++E+M    C PD + Y+ ++  L  ++ L+  L + ++M    ++  + AY  LI  + 
Sbjct: 506 LIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEML 565

Query: 250 KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
           + G+      ++ EM  +G       Y V I     EG++  A DL+  +   G   D+ 
Sbjct: 566 REGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVV 625

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL----------VCCAEMGRM 359
            YN +I G   +   D+A+   +  V     P++ T   LL          V   +   M
Sbjct: 626 TYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGM 685

Query: 360 DNF------FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS- 410
            N       ++LL +M  +K  +   +  +   + G  K  R+  A  + + + GKG S 
Sbjct: 686 WNLIELDITWQLLERM--VKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSP 743

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
           +  IY +L+    +    +KAL     M     +    S+ + +      GD  +     
Sbjct: 744 NEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLF 803

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505
             ++E+       A+  L  GL K G +D    ++
Sbjct: 804 CDLLELGYNHDEVAWKILNDGLLKAGYVDICFQML 838



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 26/211 (12%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIR-----VLAAERN-----------LDACLRV 225
           G I      L++M    C+P+ + Y  +++      LA  R+           LD   ++
Sbjct: 638 GYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQL 697

Query: 226 WEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285
            E M K  +   V  Y +LI G CK GR+     L   M   G+  +  IY +LI+    
Sbjct: 698 LERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCD 757

Query: 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ-----DDLA 340
                KA   +  + + G++  L  Y  ++ GLC    F+K   LF   ++     D++A
Sbjct: 758 TKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVA 817

Query: 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
             +  +N  L+   + G +D  F++L+ MEK
Sbjct: 818 --WKILNDGLL---KAGYVDICFQMLSIMEK 843



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 78/211 (36%), Gaps = 16/211 (7%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +GR+ +  +++ KM R    PDV  Y  +I        +D      + M     E +   
Sbjct: 602 EGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWT 661

Query: 241 YVTLIMGLCKGGRV-VRG---------------HELFREMKENGILIDRAIYGVLIEGLV 284
           Y  L+  L KG    VR                 +L   M ++G+      Y  LI G  
Sbjct: 662 YCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFC 721

Query: 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS 344
             G++ +AC LL  +   G   +  IY  +I   C  K F+KA     +  +    P   
Sbjct: 722 KAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLE 781

Query: 345 TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
           +   L+V     G  +    L   + +L ++
Sbjct: 782 SYRLLVVGLCNEGDFEKVKSLFCDLLELGYN 812


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 175/390 (44%), Gaps = 15/390 (3%)

Query: 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261
           D+++Y  +I  L         L V  +M K   E DV+   +LI G C+G RV    +L 
Sbjct: 44  DLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLV 103

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
            +M+E G   D  IY  +I+G    G V  A +L   +   G RAD   YNS++ GLC  
Sbjct: 104 SKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCS 163

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
            ++  A +L    V  D+ P+  T   ++    + G+     KL  +M +    V  D+ 
Sbjct: 164 GRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRR--CVDPDVF 221

Query: 382 KFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKM 438
            +   + G     R+  A  + + +  KG    V  YN L+    +   V +   LF +M
Sbjct: 222 TYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREM 281

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
               L  ++++++  IQ + ++G    A E  ++   M   P++  Y+ L  GLC    +
Sbjct: 282 AQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSR---MDSRPNIRTYSILLYGLCMNWRV 338

Query: 499 DAAMMLVRDCLGNVASGPTEF---KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           + A++L      N+     E     Y + I  +C+ G  E   ++   ++ +G  P+ V 
Sbjct: 339 EKALVLFE----NMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVS 394

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLL 585
            + +ISG C+    +++  ++  ++E  LL
Sbjct: 395 YTTMISGFCRKRQWDKSDLLYRKMQEDGLL 424



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 187/417 (44%), Gaps = 25/417 (5%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P +  ++ ++  +A  +N D  + ++  M+   +  D+ +Y  +I  LC+  R V    +
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 67

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             +M + G   D      LI G     +V  A DL+  + + G+R D+ IYN+II G C+
Sbjct: 68  VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 127

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLL--VCCAEMGRMDNFFKLLAQM-------EK 371
           +   + A +LF+   +D +  D  T N L+  +CC+  GR  +  +L+  M         
Sbjct: 128 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCS--GRWSDAARLMRDMVMRDIVPNV 185

Query: 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKK 430
           + F+   D+     F+  KE +   A+ ++EE+  +     V  YN L+  L   G V +
Sbjct: 186 ITFTAVIDV-----FV--KEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDE 238

Query: 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490
           A  +   M       + ++++  I    +S  + E  +   ++ +   V     YN + +
Sbjct: 239 AKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQ 298

Query: 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550
           G  + G  DAA    ++    + S P    Y++ +  +C +   EK + +   M +    
Sbjct: 299 GYFQAGRPDAA----QEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIE 354

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
            +    + +I GMCK G +E+A  +F +L  + L  + + + Y  ++    +K+  D
Sbjct: 355 LDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGL--KPDVVSYTTMISGFCRKRQWD 409



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 101/440 (22%), Positives = 179/440 (40%), Gaps = 93/440 (21%)

Query: 121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV------ 174
           +++++ K +N   + S F H   +  G  H+  SYN +  CL R + F  A  V      
Sbjct: 16  VLSKIAKSKNYDLVISLFHHM--EVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMK 73

Query: 175 ----PELMD--------SQG-RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221
               P+++          QG R+ + ++++ KM     +PDV  Y  +I        ++ 
Sbjct: 74  FGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVND 133

Query: 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR-----------VVR-------------- 256
            + +++ M++D V AD + Y +L+ GLC  GR           V+R              
Sbjct: 134 AVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVID 193

Query: 257 ----------GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
                       +L+ EM    +  D   Y  LI GL   G+V +A  +L  +V  G   
Sbjct: 194 VFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLP 253

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D+  YN++I G C+ K+ D+  KLF    Q  L  D  T N ++    + GR D      
Sbjct: 254 DVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPD------ 307

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIG 426
                                         A ++F  +  +   ++  Y+IL+  L    
Sbjct: 308 -----------------------------AAQEIFSRMDSR--PNIRTYSILLYGLCMNW 336

Query: 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYN 486
            V+KAL LF  M+   +E++  +++I I    + G++ +A +    +      P V +Y 
Sbjct: 337 RVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYT 396

Query: 487 CLTKGLCKIGEIDAAMMLVR 506
            +  G C+  + D + +L R
Sbjct: 397 TMISGFCRKRQWDKSDLLYR 416


>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
 gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
          Length = 501

 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 116/504 (23%), Positives = 213/504 (42%), Gaps = 66/504 (13%)

Query: 98  KNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQ--KGYKHNFASY 155
           K  F+W           + VTP  V ++++ E +   A   F  A  +   G+KH+  ++
Sbjct: 33  KAMFKWA----------KTVTPTHVQQLIQAERDIKKALIIFDSATAEYANGFKHDLNTF 82

Query: 156 NALAYCLSRNNLFRAADQVPELMDSQ----------------GRIAEMLE---ILEKMRR 196
           + +   L   N FR A+ + + M  +                GRI + L+   +  KM+ 
Sbjct: 83  SLMISKLISANQFRLAETLLDRMKEEKIDVTEDILLSICRAYGRIHKPLDSIRVFHKMQD 142

Query: 197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK-GGRVV 255
             CKP   +Y +++ +L  E  L +  R + +M+K  +   V +   LI   CK  G + 
Sbjct: 143 FHCKPTEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAFCKNSGTMD 202

Query: 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
           +   LFR M  +G   D   YG LI GL     + +A +LL+++   G    +  Y SII
Sbjct: 203 KAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSII 262

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            GLC++   D+A +L E     ++ P+  T + L+    + G       +L  M  ++  
Sbjct: 263 HGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELM--IQKR 320

Query: 376 VAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKAL 432
           +  ++  +   L G   E +I  AL++F+ +K +G+     +Y  ++  L ++   ++A 
Sbjct: 321 LRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAA 380

Query: 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGL 492
               +M    ++ N +++S+    HV +         HN++I                GL
Sbjct: 381 NFLDEMVLCGIKPNRITWSL----HVRT---------HNRVIH---------------GL 412

Query: 493 CKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN 552
           C I   + A  L    L    S   +   +L +   C   +  K   +L+EM   GC P 
Sbjct: 413 CTINNSNRAFQLYLSVLTRGISITVDTFNSL-LKCFCNKKDLPKTSRILDEMVINGCIPQ 471

Query: 553 EVICSAIISGMCKHGTLEEARKVF 576
             + S +++  C      +A K+ 
Sbjct: 472 GEMWSTMVNCFCDERKACDAMKLL 495



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 131/284 (46%), Gaps = 9/284 (3%)

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
           +G++ DL  ++ +I  L    QF  A  L +   ++ +     T + LL  C   GR+  
Sbjct: 73  NGFKHDLNTFSLMISKLISANQFRLAETLLDRMKEEKIDV---TEDILLSICRAYGRIHK 129

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIYNI 417
               +    K++       EK +  ++    +E ++  A   + +++  G   +V   N+
Sbjct: 130 PLDSIRVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNV 189

Query: 418 LMGALLE-IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           L+ A  +  G + KA++LF  M     E +S ++   I        I+EA E   ++   
Sbjct: 190 LIKAFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETK 249

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK 536
              PSV  Y  +  GLC++  +D AM L+ D + +    P  F Y+  +   C++G + +
Sbjct: 250 GCSPSVVTYTSIIHGLCQLNNVDEAMRLLED-MKDKNIEPNVFTYSSLMDGFCKTGHSSR 308

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
             ++L  M Q+   PN +  S +++G+C  G + EA ++F  ++
Sbjct: 309 ARDILELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMK 352



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/330 (20%), Positives = 138/330 (41%), Gaps = 33/330 (10%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           + G + + + +   M  + C+PD + Y  +I  L   R++     + +EM+       V+
Sbjct: 197 NSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVV 256

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y ++I GLC+   V     L  +MK+  I  +   Y  L++G    G   +A D+L+ +
Sbjct: 257 TYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELM 316

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +    R ++  Y++++ GLC   + ++A ++F+        PD      ++ C  ++ R 
Sbjct: 317 IQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRF 376

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG-KEERIMMALDVFEELKGKGYSSVPIYNIL 418
                 L +M                 L G K  RI  +L             V  +N +
Sbjct: 377 QEAANFLDEM----------------VLCGIKPNRITWSL------------HVRTHNRV 408

Query: 419 MGALLEIGEVKKA--LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476
           +  L  I    +A  LYL    RG+++ V+  +F+  ++C     D+ +     ++++  
Sbjct: 409 IHGLCTINNSNRAFQLYLSVLTRGISITVD--TFNSLLKCFCNKKDLPKTSRILDEMVIN 466

Query: 477 SQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
             +P    ++ +    C   +   AM L++
Sbjct: 467 GCIPQGEMWSTMVNCFCDERKACDAMKLLQ 496



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 89/186 (47%), Gaps = 7/186 (3%)

Query: 416 NILMGALLEIGEVKK---ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
           +IL+      G + K   ++ +F KM+  + +    S+   +   VE   +  A   +  
Sbjct: 115 DILLSICRAYGRIHKPLDSIRVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRD 174

Query: 473 IIEMSQVPSVAAYNCLTKGLCK-IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531
           + +M   P+V + N L K  CK  G +D AM L R  + N    P  + Y   I  +CR 
Sbjct: 175 MRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMHLFRT-MSNHGCEPDSYTYGTLINGLCRF 233

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTI 591
               +  E+L EM  +GC P+ V  ++II G+C+   ++EA ++  +++++ +  E N  
Sbjct: 234 RSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNI--EPNVF 291

Query: 592 VYDEIL 597
            Y  ++
Sbjct: 292 TYSSLM 297



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 19/242 (7%)

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKG-------KGYSSVPIYNI 417
           LL +M++ K  V  D+        G+  + + ++ VF +++        K Y SV     
Sbjct: 101 LLDRMKEEKIDVTEDILLSICRAYGRIHKPLDSIRVFHKMQDFHCKPTEKSYISV----- 155

Query: 418 LMGALLEIGEVKKALYLFGKMRGLNL--EVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
            +  L+E  ++K A   +  MR + +   V SL+  I   C   SG + +A      +  
Sbjct: 156 -LAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAFCK-NSGTMDKAMHLFRTMSN 213

Query: 476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
               P    Y  L  GLC+   I  A  L+++ +      P+   Y   I  +C+    +
Sbjct: 214 HGCEPDSYTYGTLINGLCRFRSIVEAKELLQE-METKGCSPSVVTYTSIIHGLCQLNNVD 272

Query: 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
           + + +L +M  +   PN    S+++ G CK G    AR +   + +++L    N I Y  
Sbjct: 273 EAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRL--RPNMISYST 330

Query: 596 IL 597
           +L
Sbjct: 331 LL 332


>gi|17047023|gb|AAL34928.1|AC079037_1 Putative PPR-repeat protein [Oryza sativa]
 gi|31429883|gb|AAP51872.1| hypothetical protein LOC_Os10g02650 [Oryza sativa Japonica Group]
          Length = 949

 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 179/389 (46%), Gaps = 21/389 (5%)

Query: 207 TAMIRVLAAERNLDACLRVWEEMKKD-LVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           TA+IRV   E  L+  L V+  MK D  V+ D  AY T+I GL + GRV  G +++ EM 
Sbjct: 191 TALIRVFCREGRLEPALDVFRRMKGDEHVQLDAYAYTTMIWGLFEHGRVDHGLQMYHEMI 250

Query: 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325
           + GI  D A Y V+I        VG A D+ K ++ +G   DL  Y  ++  LC+  +  
Sbjct: 251 DRGIQPDAATYNVMIRWYCKSKWVGAAMDIYKVMIRTGVAPDLRCYTILMASLCKDGKLG 310

Query: 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL-EKFF 384
           +A  LF+  ++  L PD    + + +  A        + +L   + LK     D   K  
Sbjct: 311 EAENLFDKMLESGLFPD----HVMFISIARF--FPKGWVVLFVRKALKAVAKLDCGAKLL 364

Query: 385 EF--LVGKEERIMM---ALDVFEELKGKGYSSVPI-YNILMGALLEIGEVKKALYLFGKM 438
           E   L G    + +   A  + +E+       V I  N+++ A+   G +  + YL GK+
Sbjct: 365 ELSSLAGGCSNMSLQKEADHLLDEIVTSNVLPVNIVLNLMIIAMCSEGRLDVSYYLLGKL 424

Query: 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
                E + L+++I I+C  E   + +A      +      P ++  + +    CKIGEI
Sbjct: 425 VAYGCEPSVLTYNIVIKCLCEQNRMDDARALITIMQSRGVRPDMSTNSIMVTAYCKIGEI 484

Query: 499 DAAMMLVRDCLGNVASG---PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           ++A+ L     G +A     P+   Y   I+ +CR    ++    L +M +EG  P+E+I
Sbjct: 485 ESALHL----FGEMAKDGIEPSIAVYDSIIVCLCRMRRLKEAEATLRQMIREGLAPDEII 540

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKL 584
            +++I+G           ++F  + +R L
Sbjct: 541 YTSLINGYSLTRQTRNVCRIFDEMLKRGL 569



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 108/490 (22%), Positives = 197/490 (40%), Gaps = 53/490 (10%)

Query: 115 RRVTPDLVAEVLKVENNPTLAS--KFFHWAGK--QKGYKHNFASYNALAYCLSRNNLFRA 170
           R V PD+    + V     +       H  G+  + G + + A Y+++  CL R      
Sbjct: 462 RGVRPDMSTNSIMVTAYCKIGEIESALHLFGEMAKDGIEPSIAVYDSIIVCLCRMR---- 517

Query: 171 ADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK 230
                       R+ E    L +M R    PD   YT++I   +  R      R+++EM 
Sbjct: 518 ------------RLKEAEATLRQMIREGLAPDEIIYTSLINGYSLTRQTRNVCRIFDEML 565

Query: 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG 290
           K  ++    AY +LI GL KG ++ +       M E GI     IY +LI     +G V 
Sbjct: 566 KRGLQPGPHAYGSLINGLVKGNKIRKALGYLERMLEEGIAPQTVIYTMLINQFFRKGDVR 625

Query: 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL 350
              DL+  ++ +    DL  Y +++ G+CR         +    ++  LA        +L
Sbjct: 626 LGLDLVVLMMKTNVAPDLITYGALVTGICR--------NIARRGMRPSLAKKLKEARYML 677

Query: 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY- 409
                       F++L Q+   +     D +      +  EE I +A  + ++L+  G  
Sbjct: 678 ------------FRMLPQIIDTRNGKQKDNQ------ICTEEMIQVAQGIIQDLEENGMV 719

Query: 410 SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469
             + IYN ++  L    ++  A  L   M    +  N ++++I +   +  GDI  A + 
Sbjct: 720 PDLHIYNGMINGLCRANKMDDAYSLLSVMDQTGILPNHVTYTILMNNQIRLGDINHAIQL 779

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM--MLVRDCLGNVASGPTEFKYALTILH 527
            N +     V     YN   KGL   G +  A+  +L+    G V   P++  Y   +  
Sbjct: 780 FNSLNSDGCVFDKITYNTFIKGLSLAGRMKEALSFLLMMHKRGFV---PSKASYDKLMEL 836

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT-NLRERKLLT 586
           +      + ++++  +M  +G  P     ++++  + K G   EA ++FT  L++RK+  
Sbjct: 837 LLAENAIDIVLQLFEDMLFQGYTPRYANYTSLLLVLAKDGRWSEADRIFTMMLKKRKMFI 896

Query: 587 EANTIVYDEI 596
               I   E+
Sbjct: 897 NWWEITKTEL 906



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 95/450 (21%), Positives = 185/450 (41%), Gaps = 27/450 (6%)

Query: 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237
           M S+GR+     +L K+    C+P V  Y  +I+ L  +  +D    +   M+   V  D
Sbjct: 408 MCSEGRLDVSYYLLGKLVAYGCEPSVLTYNIVIKCLCEQNRMDDARALITIMQSRGVRPD 467

Query: 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLK 297
           +     ++   CK G +     LF EM ++GI    A+Y  +I  L    ++ +A   L+
Sbjct: 468 MSTNSIMVTAYCKIGEIESALHLFGEMAKDGIEPSIAVYDSIIVCLCRMRRLKEAEATLR 527

Query: 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357
            ++  G   D  IY S+I G    +Q     ++F+  ++  L P       L+     + 
Sbjct: 528 QMIREGLAPDEIIYTSLINGYSLTRQTRNVCRIFDEMLKRGLQPGPHAYGSLI---NGLV 584

Query: 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER---IMMALD-VFEELKGKGYSSVP 413
           + +   K L  +E++     A     +  L+ +  R   + + LD V   +K      + 
Sbjct: 585 KGNKIRKALGYLERMLEEGIAPQTVIYTMLINQFFRKGDVRLGLDLVVLMMKTNVAPDLI 644

Query: 414 IYNILM-GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ-CHVESGDILEACECHN 471
            Y  L+ G    I        L  K++    E   + F +  Q     +G   +   C  
Sbjct: 645 TYGALVTGICRNIARRGMRPSLAKKLK----EARYMLFRMLPQIIDTRNGKQKDNQICTE 700

Query: 472 KIIEMSQ-----------VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
           ++I+++Q           VP +  YN +  GLC+  ++D A  L+   +      P    
Sbjct: 701 EMIQVAQGIIQDLEENGMVPDLHIYNGMINGLCRANKMDDAYSLL-SVMDQTGILPNHVT 759

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           Y + + +  R G+    I++ N +  +GC  +++  +  I G+   G ++EA      + 
Sbjct: 760 YTILMNNQIRLGDINHAIQLFNSLNSDGCVFDKITYNTFIKGLSLAGRMKEALSFLLMMH 819

Query: 581 ERKLLTEANTIVYDEILIEHMKKKTADLVL 610
           +R  +    +  YD+++   + +   D+VL
Sbjct: 820 KRGFVPSKAS--YDKLMELLLAENAIDIVL 847



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/369 (18%), Positives = 161/369 (43%), Gaps = 31/369 (8%)

Query: 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303
           +I+ +C  GR+   + L  ++   G       Y ++I+ L  + ++  A  L+  +   G
Sbjct: 404 MIIAMCSEGRLDVSYYLLGKLVAYGCEPSVLTYNIVIKCLCEQNRMDDARALITIMQSRG 463

Query: 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF 363
            R D+   + ++   C++ + + A  LF    +D + P  +  + ++VC   M R+    
Sbjct: 464 VRPDMSTNSIMVTAYCKIGEIESALHLFGEMAKDGIEPSIAVYDSIIVCLCRMRRLKEAE 523

Query: 364 KLLAQMEKLKFSVAADLEKFFEFLVGKE--ERIMMALDVFEELKGKGYSSVP-IYNILMG 420
             L QM  ++  +A D   +   + G     +      +F+E+  +G    P  Y  L+ 
Sbjct: 524 ATLRQM--IREGLAPDEIIYTSLINGYSLTRQTRNVCRIFDEMLKRGLQPGPHAYGSLIN 581

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
            L++  +++KAL    +M    +   ++ +++ I      GD+    +    +++ +  P
Sbjct: 582 GLVKGNKIRKALGYLERMLEEGIAPQTVIYTMLINQFFRKGDVRLGLDLVVLMMKTNVAP 641

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL-----TILHVCRSGE-- 533
            +  Y  L  G+C+        +  R    ++A    E +Y L      I+   R+G+  
Sbjct: 642 DLITYGALVTGICR-------NIARRGMRPSLAKKLKEARYMLFRMLPQIIDT-RNGKQK 693

Query: 534 -----AEKIIEV----LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584
                 E++I+V    + ++ + G  P+  I + +I+G+C+   +++A  + + + +  +
Sbjct: 694 DNQICTEEMIQVAQGIIQDLEENGMVPDLHIYNGMINGLCRANKMDDAYSLLSVMDQTGI 753

Query: 585 LTEANTIVY 593
           L   N + Y
Sbjct: 754 L--PNHVTY 760


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 180/422 (42%), Gaps = 52/422 (12%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G+I E L + +KM     +PDV  Y  +I  L    N  A +R+   M +   + +V 
Sbjct: 110 NRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVF 169

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           AY T+I  LCK  +V     LF EM   GI  D   Y  LI  L    +      LL ++
Sbjct: 170 AYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEM 229

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ-DDLAPDFSTVNPLLVCCAEMGR 358
           VDS    D+  +N+++  LC+  +  +A+ + +  +Q     P+  + N L+    ++ R
Sbjct: 230 VDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQR 289

Query: 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP--- 413
           +D    L  +M + +  +  D   +   + G    ER+  A+ +F E+     S +P   
Sbjct: 290 IDKAMYLFGEMCRQE--LIPDTVTYSTLIHGLCHVERLQDAIALFHEM--VACSQIPNLV 345

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKI 473
            Y IL+  L +   + +A+ L   + G NL+                             
Sbjct: 346 TYRILLDYLCKNRYLAEAMALLKAIEGSNLD----------------------------- 376

Query: 474 IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCR 530
                 P +   N    G+C+ GE++AA    RD   N++S    P  + Y++ I  +CR
Sbjct: 377 ------PDIQVNNIAIDGMCRAGELEAA----RDLFSNLSSKGLQPDVWTYSIMINGLCR 426

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            G  ++  ++  EM + GC  N  I + I  G  ++     A ++   +  R    +A+T
Sbjct: 427 RGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADAST 486

Query: 591 IV 592
           + 
Sbjct: 487 MT 488



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 172/381 (45%), Gaps = 50/381 (13%)

Query: 259 ELFREMKENGILIDRAIYGVLIEGL--VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
            L  +M   GI  +     +LI     +  GK+G+A  L   ++  G+R D+  Y ++I 
Sbjct: 82  SLSHQMDSFGIPPNIYTLHILINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLIN 141

Query: 317 GLCRV-----------------------------------KQFDKAYKLFEVTVQDDLAP 341
           GLC+V                                   +Q  +A+ LF   V   ++P
Sbjct: 142 GLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISP 201

Query: 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALD 399
           D  T N L+     +    +   LL +M   K  +  D+  F   +  + KE ++  A D
Sbjct: 202 DIFTYNSLIHALCNLCEWKHVATLLNEMVDSK--IMPDVVSFNTVVDALCKEGKVTEAHD 259

Query: 400 VFEEL--KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ-- 455
           V +++  +G    +V  YN L+    +I  + KA+YLFG+M    L  +++++S  I   
Sbjct: 260 VVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGL 319

Query: 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515
           CHVE   + +A    ++++  SQ+P++  Y  L   LCK   +  AM L++   G+    
Sbjct: 320 CHVER--LQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDP 377

Query: 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV 575
             +    + I  +CR+GE E   ++ + ++ +G  P+    S +I+G+C+ G L+EA K+
Sbjct: 378 DIQVN-NIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKL 436

Query: 576 FTNLRERKLLTEANTIVYDEI 596
           F  + E       N  +Y+ I
Sbjct: 437 FREMDENG--CTLNGCIYNTI 455



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 90/229 (39%), Gaps = 37/229 (16%)

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVESGDILEACECHNK 472
           +N L+ ++ ++      L L  +M    +  N  +  I I   CH+  G I EA    +K
Sbjct: 64  FNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRGKIGEALHLFDK 123

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVAS------------- 514
           +I     P V  Y  L  GLCK+G   AA+     M+ ++C  NV +             
Sbjct: 124 MIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQ 183

Query: 515 ----------------GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
                            P  F Y   I  +C   E + +  +LNEM      P+ V  + 
Sbjct: 184 VTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNT 243

Query: 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607
           ++  +CK G + EA  V   + +R      N I Y+ ++  + K +  D
Sbjct: 244 VVDALCKEGKVTEAHDVVDKMIQRGGCM-PNVISYNTLINGYCKIQRID 291


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 196/434 (45%), Gaps = 23/434 (5%)

Query: 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213
           ++N L   L ++N F  A +V    +++G +               K DV+++  MI+  
Sbjct: 132 TFNNLLILLIKSNFFEKAWRV--FNETKGNV---------------KLDVYSFGIMIKGC 174

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273
                LD    V  +M++  +  +V+ Y TLI G CK G + RG +LF +M E  ++ ++
Sbjct: 175 CEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQ 234

Query: 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333
             Y VLI G    G      +L + +  +G   ++  YNS+I   C   + + A++LF+ 
Sbjct: 235 YTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDE 294

Query: 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KE 391
             +  +A +  T N L+    +  R+    +L+ +M++   S   +L  +   + G    
Sbjct: 295 MRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLS--PNLISYNTLIDGYCSI 352

Query: 392 ERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
             +  A  +F ++K  G S S+  YNIL+    E         +  +M    L  + +++
Sbjct: 353 GNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTY 412

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           +I +   V S +I +A + ++ + +   V  +  Y  L  GLC +G++  A  L +  L 
Sbjct: 413 TILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKS-LD 471

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
            +   P +  Y   I   C+ G + + + +L EM + G  PN    ++ I  +CK     
Sbjct: 472 EMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWT 531

Query: 571 EARKVFTNLRERKL 584
           EA  +  ++ E  L
Sbjct: 532 EAEVLLKDMIELGL 545



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 96/418 (22%), Positives = 185/418 (44%), Gaps = 40/418 (9%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260
           P    +  ++ +L      +   RV+ E K + V+ DV ++  +I G C+ G + +G E+
Sbjct: 128 PGSNTFNNLLILLIKSNFFEKAWRVFNETKGN-VKLDVYSFGIMIKGCCEVGYLDKGFEV 186

Query: 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
             +M+E G+  +  +Y  LI+G    G + +   L   + +    A+   Y  +I G  +
Sbjct: 187 LGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFK 246

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL 380
           +       +L+E      + P+  T N ++  C   G+++N F+L               
Sbjct: 247 MGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFEL--------------- 291

Query: 381 EKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMR 439
                               F+E++ +G + +V  YN L+G L +   V +A  L  +M+
Sbjct: 292 --------------------FDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMK 331

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499
              L  N +S++  I  +   G++ +A    N++    Q PS+A YN L  G  +     
Sbjct: 332 RDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSA 391

Query: 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
               +VR+      S P++  Y + +  + RS   EK  ++ + M + G   +  I   +
Sbjct: 392 GVTDMVREMEARGLS-PSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVL 450

Query: 560 ISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFG 617
           I G+C  G ++EA K+F +L E  L  + N ++Y+ ++  + K+ ++   L  LK  G
Sbjct: 451 IHGLCVVGDMKEASKLFKSLDEMHL--KPNDVIYNTMIYGYCKEGSSYRALRLLKEMG 506



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 133/309 (43%), Gaps = 9/309 (2%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           +E+ EKM+     P+V+ Y +MI     +  L+    +++EM++  V  +V+ Y TLI G
Sbjct: 254 IELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGG 313

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC+  RV+    L   MK +G+  +   Y  LI+G    G + KA  L   +  SG    
Sbjct: 314 LCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPS 373

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           L  YN +I G    K       +        L+P   T   L+        ++  F++ +
Sbjct: 374 LATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYS 433

Query: 368 QMEKLKFSVAADLEKFFEFL-----VGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422
            MEK    + AD+  +   +     VG  +         +E+  K   +  IYN ++   
Sbjct: 434 SMEKA--GLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLK--PNDVIYNTMIYGY 489

Query: 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482
            + G   +AL L  +M    +  N  S++  IQ   +     EA      +IE+   PS+
Sbjct: 490 CKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIELGLKPSI 549

Query: 483 AAYNCLTKG 491
           + +N ++K 
Sbjct: 550 SIWNMISKA 558



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 4/144 (2%)

Query: 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513
           I  HV S    +A    N++I    VP    +N L   L K    + A  +  +  GNV 
Sbjct: 102 INAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKGNVK 161

Query: 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573
                + + + I   C  G  +K  EVL +M + G  PN V+ + +I G CK+G +E  +
Sbjct: 162 LDV--YSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGK 219

Query: 574 KVFTNLRERKLLTEANTIVYDEIL 597
           ++F  + E  ++  AN   Y  ++
Sbjct: 220 QLFYKMGELDVV--ANQYTYTVLI 241


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 196/488 (40%), Gaps = 88/488 (18%)

Query: 134  LASKFFHWAGKQKGY--KHNFASYNALAYCLSRNNLFRAA-------------------- 171
            LA KF  W  KQ G   KH    Y   A+ L +  ++ +A                    
Sbjct: 843  LALKFLKWVIKQPGLELKHLTHMYCLTAHILVKARMYDSAKSILRHLCQMGIGSKSIFGA 902

Query: 172  --------DQVPELMD-------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAE 216
                    + +P + D        +G I   +E  E +     KP V+    ++  +  +
Sbjct: 903  LMDTYPLCNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKD 962

Query: 217  RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276
            +  +    ++ EM    +  +V  +  LI GLC  G + +   L ++M+ENG +     Y
Sbjct: 963  KRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTY 1022

Query: 277  GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336
              L+     +G+   A +L+  ++  G  AD+  YN  I  LC   +  KAY L +   +
Sbjct: 1023 NTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRK 1082

Query: 337  DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396
            + ++P+  T N L+          N F                          KE +I +
Sbjct: 1083 EMISPNEVTYNTLI----------NGFV-------------------------KEGKIGV 1107

Query: 397  ALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455
            A  VF E+     S +   YN L+G    +G+ ++AL L   M    L +N +++   + 
Sbjct: 1108 AAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLN 1167

Query: 456  CHVESGDILEACECHNKIIEMSQVPSVA----AYNCLTKGLCKIGEIDAAMMLVRDCLGN 511
               +     E  E   +++E  +V  +     AY  L  GLCK G +D A+ LV    GN
Sbjct: 1168 GLCKH----EKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLV----GN 1219

Query: 512  V---ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568
            +      P    Y+  I   CR G  +   E++  M + G   N++I S +I   C+HG 
Sbjct: 1220 MYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGN 1279

Query: 569  LEEARKVF 576
            + EA KV+
Sbjct: 1280 VTEAMKVY 1287



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 100/437 (22%), Positives = 181/437 (41%), Gaps = 42/437 (9%)

Query: 190  ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLC 249
            +LE+MR N       AYT +I  L     LD  +++   M KD V  DV+ Y +LI G C
Sbjct: 1181 LLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFC 1240

Query: 250  KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG 309
            + G +    E+   M  +G+++++ IY  LI      G V +A  +   +  +G+ AD  
Sbjct: 1241 RVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHF 1300

Query: 310  IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369
              N ++  LCR  +  +A K      +  L P+  T + ++     +G   N F     M
Sbjct: 1301 TCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDM 1360

Query: 370  EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVK 429
                                              +K   + S   Y  L+  L + G + 
Sbjct: 1361 ----------------------------------IKCGQHPSFFTYGSLLKGLCKGGNLV 1386

Query: 430  KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT 489
            +A     ++  +   V+S+ ++  +    +SG++ EA    +K+++ + +P    Y+ L 
Sbjct: 1387 EAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLL 1446

Query: 490  KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGC 549
             GLC+ G+   A+ L    +G     P    Y   +  + ++G  +       EM ++G 
Sbjct: 1447 TGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGT 1506

Query: 550  PPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLV 609
             P+ V  +AII    + G + +A   F+ +R   +    N   Y+ IL+    KK A   
Sbjct: 1507 CPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVC--PNLATYN-ILLHGFSKKQAL-- 1561

Query: 610  LSGLKFFGLESKLKAKG 626
               L++  L S +  +G
Sbjct: 1562 ---LRYLSLYSTMMREG 1575



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 97/428 (22%), Positives = 177/428 (41%), Gaps = 12/428 (2%)

Query: 181  QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
            +G + +   +L++M  N   P +  Y  ++     +    A + + + M    +EADV  
Sbjct: 997  EGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCT 1056

Query: 241  YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
            Y   I  LC   R  + + L ++M++  I  +   Y  LI G V EGK+G A  +  ++ 
Sbjct: 1057 YNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMS 1116

Query: 301  DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                  +   YN++IGG C V  F++A +L +      L  +  T   LL    +  + +
Sbjct: 1117 KFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFE 1176

Query: 361  NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-----SVPIY 415
               +LL +M      V       +  L+    +  M LD   +L G  Y       V  Y
Sbjct: 1177 LAKRLLERMRVNDMVVG---HIAYTVLIDGLCKNGM-LDEAVQLVGNMYKDGVNPDVITY 1232

Query: 416  NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
            + L+     +G +K A  +  +M    L +N + +S  I    + G++ EA + +  +  
Sbjct: 1233 SSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNC 1292

Query: 476  MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
                      N L   LC+ G++  A   +   +  +   P    Y   I      G+  
Sbjct: 1293 NGHGADHFTCNVLVSSLCRDGKLGEAEKFLCH-MSRIGLVPNSITYDCIINGYGSIGDPL 1351

Query: 536  KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
                  ++M + G  P+     +++ G+CK G L EA+K F N R   +    ++++Y+ 
Sbjct: 1352 NAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKK-FLN-RLHYIPGAVDSVMYNT 1409

Query: 596  ILIEHMKK 603
            +L E  K 
Sbjct: 1410 LLAETCKS 1417



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 170/398 (42%), Gaps = 10/398 (2%)

Query: 194  MRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253
            M R    P+   YT ++  L+   +  A    +EEM K     D +A+  +I    + G+
Sbjct: 1466 MGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQ 1525

Query: 254  VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS 313
            +++ ++ F  M+  G+  + A Y +L+ G   +  + +   L   ++  G   D   ++S
Sbjct: 1526 MMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHS 1585

Query: 314  IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373
            +I GL +    D   KL    + +    D  T N L+   +E G+M   F L+  M  L 
Sbjct: 1586 LILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTL- 1644

Query: 374  FSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVP---IYNILMGALLEIGEV 428
              V  D + +     G  K+     +  V  E+   G   +P    Y  L+  +  +G++
Sbjct: 1645 -GVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGV--IPKHAQYITLINGMCRVGDI 1701

Query: 429  KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
            + A  L  +M  L    + ++ S  ++  +  G   +A    + ++ M  +P++A +  L
Sbjct: 1702 QGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTL 1761

Query: 489  TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
                C+  +I  A+ L +  +           Y + I+ +C +G++    E+  EM    
Sbjct: 1762 MHRFCRDAKIAEALKL-KGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRD 1820

Query: 549  CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
              PN    + ++  +     L +  K+ T+L+ER L++
Sbjct: 1821 LCPNITTYAVLVDAISAANNLIQGEKLLTDLQERGLIS 1858



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 141/322 (43%), Gaps = 8/322 (2%)

Query: 177  LMDSQGRIAEML---EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
            ++DS  R  +M+   +    MR     P++  Y  ++   + ++ L   L ++  M ++ 
Sbjct: 1516 IIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREG 1575

Query: 234  VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
            +  D + + +LI+GL K G    G +L  +M   G L D+  + +LI      GK+ KA 
Sbjct: 1576 IFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAF 1635

Query: 294  DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
            DL+  +   G   D   YN I  GL +   F ++  +    +++ + P  +    L+   
Sbjct: 1636 DLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGM 1695

Query: 354  AEMGRMDNFFKLLAQMEKLKFS---VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS 410
              +G +   FKL  +ME L F    VA           GK E  M+ LD    L+ +   
Sbjct: 1696 CRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLD--HMLRMRLLP 1753

Query: 411  SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
            ++  +  LM       ++ +AL L G M    L+++ +++++ I     +GD   A E +
Sbjct: 1754 TIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELY 1813

Query: 471  NKIIEMSQVPSVAAYNCLTKGL 492
             ++      P++  Y  L   +
Sbjct: 1814 EEMRHRDLCPNITTYAVLVDAI 1835



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/476 (20%), Positives = 188/476 (39%), Gaps = 57/476 (11%)

Query: 182  GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
            G + E  + L ++       D   Y  ++       NL   + ++++M ++ V  D   Y
Sbjct: 1383 GNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTY 1442

Query: 242  VTLIMGLCKGGRVVRGHELFREMKENGILI-DRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             +L+ GLC+ G+ V    LF      G L  +  +Y  L++GL   G    A    ++++
Sbjct: 1443 SSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMM 1502

Query: 301  DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
              G   D   +N+II    R  Q  KA   F       + P+ +T N LL   ++   + 
Sbjct: 1503 KKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALL 1562

Query: 361  NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK-----GYSSVPIY 415
             +  L + M  ++  +  D   F   ++G  +  +  L V  +L GK       +    +
Sbjct: 1563 RYLSLYSTM--MREGIFPDKLTFHSLILGLSKSGIPDLGV--KLLGKMIMEGTLADQFTF 1618

Query: 416  NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
            NIL+    E G+++KA  L   M  L +  +  +++       +     E+    ++++E
Sbjct: 1619 NILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLE 1678

Query: 476  MSQVPSVAAYNCLTKGLCKIGEIDAAM--------------------------------- 502
               +P  A Y  L  G+C++G+I  A                                  
Sbjct: 1679 NGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTED 1738

Query: 503  -MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561
             MLV D +  +   PT   +   +   CR  +  + +++   M   G   + V  + +I 
Sbjct: 1739 AMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIM 1798

Query: 562  GMCKHGTLEEARKVFTNLRERKL-------------LTEANTIVYDEILIEHMKKK 604
            GMC +G    A +++  +R R L             ++ AN ++  E L+  ++++
Sbjct: 1799 GMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQER 1854



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 58/122 (47%)

Query: 182  GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
            G+  + + +L+ M R    P +  +T ++     +  +   L++   M+   ++ DV+AY
Sbjct: 1734 GKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAY 1793

Query: 242  VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
              LIMG+C  G      EL+ EM+   +  +   Y VL++ +     + +   LL DL +
Sbjct: 1794 NVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQE 1853

Query: 302  SG 303
             G
Sbjct: 1854 RG 1855



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 42/209 (20%), Positives = 85/209 (40%), Gaps = 7/209 (3%)

Query: 163  SRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDAC 222
            + N++F   ++     +S   + EMLE       N   P    Y  +I  +    ++   
Sbjct: 1652 TYNHIFNGLNKKSAFRESTVVLHEMLE-------NGVIPKHAQYITLINGMCRVGDIQGA 1704

Query: 223  LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
             ++ +EM+     +  +A   ++ GL   G+      +   M    +L   A +  L+  
Sbjct: 1705 FKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHR 1764

Query: 283  LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
               + K+ +A  L   +   G + D+  YN +I G+C       A++L+E     DL P+
Sbjct: 1765 FCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPN 1824

Query: 343  FSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371
             +T   L+   +    +    KLL  +++
Sbjct: 1825 ITTYAVLVDAISAANNLIQGEKLLTDLQE 1853



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 45/90 (50%)

Query: 181  QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
              +IAE L++   M     K DV AY  +I  + A  +  A   ++EEM+   +  ++  
Sbjct: 1768 DAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITT 1827

Query: 241  YVTLIMGLCKGGRVVRGHELFREMKENGIL 270
            Y  L+  +     +++G +L  +++E G++
Sbjct: 1828 YAVLVDAISAANNLIQGEKLLTDLQERGLI 1857


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 190/408 (46%), Gaps = 19/408 (4%)

Query: 183 RIAEMLEI-LEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA--DVM 239
           R ++ ++I L +M +  C P+VF+Y  +++ L  +      L + + M  D  +   DV+
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVV 200

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
           +Y T+I G  K G + + +  + EM + GIL +   Y  +I  L     + KA ++L  +
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSM 260

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           V +G   +   YNSI+ G C   Q  +A    +    D + PD  T N L+    + GR 
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA-----LDVFEELKGKGYSSVPI 414
               K+   M K    +  ++  +   L G   +  +      LD+   ++   + +  +
Sbjct: 321 TEARKMFDSMTKR--GLKPEITTYGTLLQGYATKGALVEMHGLLDLM--VRNGIHPNHYV 376

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           ++IL+ A  + G+V +A+ +F KMR   L  +++++   I    +SG + +A     ++I
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI 436

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG-- 532
           +    P    YN L   LC   + D A  L+ + L       T F  ++   H C+ G  
Sbjct: 437 DERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSH-CKEGRV 495

Query: 533 -EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
            E+EK+ ++   M + G  P+ +  S +I G C  G ++EA K+  ++
Sbjct: 496 IESEKLFDL---MVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASM 540



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 189/419 (45%), Gaps = 16/419 (3%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           ++G + EM  +L+ M RN   P+ + ++ +I   A +  +D  + V+ +M++  +  D +
Sbjct: 351 TKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
            Y T+I  LCK GRV      F +M +  +     +Y  LI  L    K  KA +L+ ++
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
           +D G   D   +NSII   C+  +  ++ KLF++ V+  + PD  T + L+      G+M
Sbjct: 471 LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 530

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYN 416
           D   KLLA M  +   +  D   +   + G  K  R+  AL +F E++  G S  +  YN
Sbjct: 531 DEATKLLASM--VSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588

Query: 417 ILMGALLEIGEVKKA--LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           I++  L +      A  LY+     G  LE+++ +  +   C     D  EA      + 
Sbjct: 589 IILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTD--EALRMFQNLC 646

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRS 531
                     +N +   L K+G  D A    +D    +++    P    Y+L   ++   
Sbjct: 647 LTDLQLETRTFNIMIGALLKVGRNDEA----KDLFAALSANGLVPDVRTYSLMAENLIEQ 702

Query: 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           G  E++ ++   M + GC  N  + ++I+  + + G +  A      + E+    EA+T
Sbjct: 703 GLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEAST 761



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/372 (19%), Positives = 164/372 (44%), Gaps = 11/372 (2%)

Query: 232 DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291
           D V  ++  Y  L+   C  GR+  G      + + G ++D   +  +++GL  + +   
Sbjct: 85  DEVTPNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSD 144

Query: 292 ACDL-LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD--DLAPDFSTVNP 348
           A D+ L+ +   G   ++  YN ++ GLC   +  +A +L ++   D  D  PD  +   
Sbjct: 145 AMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTT 204

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKG 406
           ++    + G +D  +    +M  L   +  ++  +   +    K + +  A++V   +  
Sbjct: 205 VINGFFKEGDLDKAYGTYHEM--LDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVK 262

Query: 407 KG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465
            G   +   YN ++      G+ K+A+    KM    +E + ++++  +    ++G   E
Sbjct: 263 NGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTE 322

Query: 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525
           A +  + + +    P +  Y  L +G    G +   M  + D +      P  + +++ I
Sbjct: 323 ARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL-VEMHGLLDLMVRNGIHPNHYVFSILI 381

Query: 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585
               + G+ ++ + V ++M Q+G  P+ V    +I  +CK G +E+A + F  + + +L 
Sbjct: 382 CAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERL- 440

Query: 586 TEANTIVYDEIL 597
                IVY+ ++
Sbjct: 441 -SPGNIVYNSLI 451



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 4/137 (2%)

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           +I+   +    A+  + KGLC       AM +V   +  +   P  F Y + +  +C   
Sbjct: 117 VIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDN 176

Query: 533 EAEKIIEVLNEMTQEG--CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
            +++ +E+L  M  +G  CPP+ V  + +I+G  K G L++A   +  + +R +L   N 
Sbjct: 177 RSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL--PNV 234

Query: 591 IVYDEILIEHMKKKTAD 607
           + Y  I+    K +  D
Sbjct: 235 VTYSSIIAALCKAQAMD 251


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 177/392 (45%), Gaps = 37/392 (9%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G I +  ++L ++R     P+V  YT +I     +  ++    ++ EM K  + A+   Y
Sbjct: 177 GEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTY 236

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI GL K G   +G E++ +M+E+G+  +   Y  ++  L  +G+   A  +  ++ +
Sbjct: 237 TVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRE 296

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
            G   ++  YN++IGGLCR  + ++A ++ +    D + P+  T N L+         D 
Sbjct: 297 RGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLI---------DG 347

Query: 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420
           F      + KL                GK      AL +  +LK +G S S+  YNIL+ 
Sbjct: 348 F----CGVRKL----------------GK------ALSLCRDLKSRGLSPSLVTYNILVS 381

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
              + G+   A  +  +M    ++ + ++++I I     S ++ +A +  + + E+   P
Sbjct: 382 GFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTP 441

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540
            V  Y+ L  G C  G ++ A  L +  +      P E  Y   +L  C+ G + + + +
Sbjct: 442 DVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFE-PNEVIYNTMVLGYCKEGSSYRALRL 500

Query: 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
             EM ++  PPN      +I  +CK    +EA
Sbjct: 501 FREMEEKELPPNVASYRYMIEVLCKERKSKEA 532



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 170/377 (45%), Gaps = 45/377 (11%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
           V  DV ++  +I G C+ G + +  +L  E++E G   +  IY  LI+G   +G++ KA 
Sbjct: 159 VVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAK 218

Query: 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
           DL  ++   G  A+   Y  +I GL +     + ++++E   +  + P+  T N ++   
Sbjct: 219 DLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQL 278

Query: 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SV 412
            + GR  + FK                                   VF+E++ +G S ++
Sbjct: 279 CKDGRTKDAFK-----------------------------------VFDEMRERGVSCNI 303

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ--CHVES-GDILEACEC 469
             YN L+G L    +  +A  +  +M+   +  N ++++  I   C V   G  L  C  
Sbjct: 304 VTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCR- 362

Query: 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
              +      PS+  YN L  G CK G+   A  +V++ +      P++  Y + I    
Sbjct: 363 --DLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKE-MEERGIKPSKVTYTILIDTFA 419

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEAN 589
           RS   EK I++ + M + G  P+    S +I G C  G + EA ++F ++ E+K   E N
Sbjct: 420 RSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKF--EPN 477

Query: 590 TIVYDEILIEHMKKKTA 606
            ++Y+ +++ + K+ ++
Sbjct: 478 EVIYNTMVLGYCKEGSS 494



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 141/307 (45%), Gaps = 5/307 (1%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
            E+ EKM+ +   P++  Y  ++  L  +       +V++EM++  V  +++ Y TLI G
Sbjct: 253 FEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGG 312

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LC+  +    +E+  +MK +GI  +   Y  LI+G  G  K+GKA  L +DL   G    
Sbjct: 313 LCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPS 372

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           L  YN ++ G C+      A K+ +   +  + P   T   L+   A    M+   +L +
Sbjct: 373 LVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRS 432

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE 424
            ME+L   +  D+  +   + G   + R+  A  +F+ +  K +  +  IYN ++    +
Sbjct: 433 SMEEL--GLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCK 490

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
            G   +AL LF +M    L  N  S+   I+   +     EA     K+I+    PS + 
Sbjct: 491 EGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPSDSI 550

Query: 485 YNCLTKG 491
            N +++ 
Sbjct: 551 LNLISRA 557



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 161/387 (41%), Gaps = 51/387 (13%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           +G I +  ++  +M +     + + YT +I  L           ++E+M++  V  ++  
Sbjct: 211 KGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHT 270

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
           Y  ++  LCK GR     ++F EM+E G+  +   Y  LI GL  E K  +A +++  + 
Sbjct: 271 YNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMK 330

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
             G   +L  YN++I G C V++  KA  L        L+P   T N L+    + G   
Sbjct: 331 SDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTS 390

Query: 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420
              K++ +ME+                                 +G   S V  Y IL+ 
Sbjct: 391 GAGKVVKEMEE---------------------------------RGIKPSKVT-YTILID 416

Query: 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480
                  ++KA+ L   M  L L  +  ++S+ I      G + EA      ++E    P
Sbjct: 417 TFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEP 476

Query: 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLG-----NVASGPTEFKYALTILHVC---RSG 532
           +   YN +  G CK G    A+ L R+        NVAS    ++Y + +L  C   +S 
Sbjct: 477 NEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVAS----YRYMIEVL--CKERKSK 530

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAI 559
           EAE ++E   +M   G  P++ I + I
Sbjct: 531 EAEGLVE---KMIDSGIGPSDSILNLI 554



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 93/225 (41%), Gaps = 41/225 (18%)

Query: 401 FEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460
           F E K K    V  + I++    E GE++K+  L  ++R                     
Sbjct: 152 FNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELR--------------------- 190

Query: 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520
                         E    P+V  Y  L  G CK GEI+ A  L  + +G       E+ 
Sbjct: 191 --------------EFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFE-MGKFGLVANEWT 235

Query: 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           Y + I  + ++G  ++  E+  +M + G  PN    + +++ +CK G  ++A KVF  +R
Sbjct: 236 YTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMR 295

Query: 581 ERKLLTEANTIVYDEI---LIEHMKKKTADLVLSGLKFFGLESKL 622
           ER +    N + Y+ +   L   MK   A+ V+  +K  G+   L
Sbjct: 296 ERGV--SCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNL 338


>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
 gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g51965, mitochondrial; Flags: Precursor
 gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
           Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
           thaliana]
 gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
          Length = 650

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 118/534 (22%), Positives = 221/534 (41%), Gaps = 75/534 (14%)

Query: 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFAS-YNALAYCLSRNNLFRAADQVPE 176
           TPD  +E+LK  N+P LA +FF        Y  N    YN +   LSR+NL    D+V  
Sbjct: 98  TPDEASEILKSLNSPLLAVEFFKLVPSLCPYSQNDPFLYNRIILILSRSNLPDRFDRVRS 157

Query: 177 LMDSQ-------------------GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER 217
           ++DS                    G   ++   L  +++   K + F Y  +++     R
Sbjct: 158 ILDSMVKSNVHGNISTVNILIGFFGNTEDLQMCLRLVKKWDLKMNSFTYKCLLQAYLRSR 217

Query: 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277
           +      V+ E+++   + D+ AY  L+  L K  +     ++F +MK+     D   Y 
Sbjct: 218 DYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKDEKAC---QVFEDMKKRHCRRDEYTYT 274

Query: 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337
           ++I  +   GK  +A  L  +++  G   ++  YN+++  L + K  DKA ++F   V+ 
Sbjct: 275 IMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVET 334

Query: 338 DLAPD---FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI 394
              P+   +S +  LLV   ++ R+D   ++                             
Sbjct: 335 GCRPNEYTYSLLLNLLVAEGQLVRLDGVVEI----------------------------- 365

Query: 395 MMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454
                       K Y +  IY+ L+  L ++G V +A  LF  M    ++    S+   +
Sbjct: 366 -----------SKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSML 414

Query: 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514
           +    +G  +EA E  +KI E   V     YN +   L K+ +I     L    +     
Sbjct: 415 ESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEK-MKKDGP 473

Query: 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574
            P  F Y + I    R GE ++ I +  E+ +  C P+ +  +++I+ + K+G ++EA  
Sbjct: 474 SPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHV 533

Query: 575 VFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCK 628
            F  ++E+ L    + + Y  ++    K +  ++       + L  ++  KGC+
Sbjct: 534 RFKEMQEKGL--NPDVVTYSTLMECFGKTERVEMA------YSLFEEMLVKGCQ 579



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 187/390 (47%), Gaps = 17/390 (4%)

Query: 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
           L+D+  +  +  ++ E M++  C+ D + YT MIR +      D  + ++ EM  + +  
Sbjct: 244 LLDALAKDEKACQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTL 303

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLL 296
           +V+ Y TL+  L KG  V +  ++F  M E G   +   Y +L+  LV EG++ +    L
Sbjct: 304 NVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVR----L 359

Query: 297 KDLVDSGYR-ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355
             +V+   R    GIY+ ++  L ++    +A++LF       +  +  +   +L     
Sbjct: 360 DGVVEISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCG 419

Query: 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPI 414
            G+     ++L+++ +        +       +GK ++I    D+FE++K  G S  +  
Sbjct: 420 AGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFT 479

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           YNIL+ +   +GEV +A+ +F ++   + + + +S++  I C  ++GD+ EA     ++ 
Sbjct: 480 YNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ 539

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAM-----MLVRDCLGNVASGPTEFKYALTILHVC 529
           E    P V  Y+ L +   K   ++ A      MLV+ C  N+ +      Y + +  + 
Sbjct: 540 EKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVT------YNILLDCLE 593

Query: 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559
           ++G   + +++ ++M Q+G  P+ +  + +
Sbjct: 594 KNGRTAEAVDLYSKMKQQGLTPDSITYTVL 623



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 149/327 (45%), Gaps = 23/327 (7%)

Query: 146 KGYKHNFASYNALAYCLSRNNLFRAADQV-------------------PELMDSQGRIAE 186
           +G   N   YN L   L++  +   A QV                     L+ ++G++  
Sbjct: 299 EGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVR 358

Query: 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246
           +  ++E  +R + +     Y+ ++R L+   ++    R++ +M    V+ +  +Y++++ 
Sbjct: 359 LDGVVEISKRYMTQG---IYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLE 415

Query: 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306
            LC  G+ +   E+  ++ E G++ D  +Y  +   L    ++    DL + +   G   
Sbjct: 416 SLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSP 475

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
           D+  YN +I    RV + D+A  +FE   + D  PD  + N L+ C  + G +D      
Sbjct: 476 DIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRF 535

Query: 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEI 425
            +M++   +             GK ER+ MA  +FEE+  KG   ++  YNIL+  L + 
Sbjct: 536 KEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKN 595

Query: 426 GEVKKALYLFGKMRGLNLEVNSLSFSI 452
           G   +A+ L+ KM+   L  +S+++++
Sbjct: 596 GRTAEAVDLYSKMKQQGLTPDSITYTV 622



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 16/131 (12%)

Query: 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTA 208
           K +  SYN+L  CL +N                G + E     ++M+     PDV  Y+ 
Sbjct: 509 KPDIISYNSLINCLGKN----------------GDVDEAHVRFKEMQEKGLNPDVVTYST 552

Query: 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268
           ++        ++    ++EEM     + +++ Y  L+  L K GR     +L+ +MK+ G
Sbjct: 553 LMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQG 612

Query: 269 ILIDRAIYGVL 279
           +  D   Y VL
Sbjct: 613 LTPDSITYTVL 623


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.138    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,702,958,401
Number of Sequences: 23463169
Number of extensions: 405806329
Number of successful extensions: 1210398
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5291
Number of HSP's successfully gapped in prelim test: 4320
Number of HSP's that attempted gapping in prelim test: 1059941
Number of HSP's gapped (non-prelim): 61695
length of query: 632
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 483
effective length of database: 8,863,183,186
effective search space: 4280917478838
effective search space used: 4280917478838
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)