Query 006744
Match_columns 632
No_of_seqs 818 out of 3614
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 13:51:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.7E-65 3.8E-70 551.9 62.6 496 125-623 379-916 (1060)
2 PLN03077 Protein ECB2; Provisi 100.0 8.5E-67 1.8E-71 574.4 50.9 484 118-622 154-657 (857)
3 PLN03218 maturation of RBCL 1; 100.0 3.2E-64 6.8E-69 542.1 61.0 465 149-620 367-877 (1060)
4 PLN03081 pentatricopeptide (PP 100.0 1.2E-63 2.5E-68 536.5 55.7 452 121-588 92-563 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 4.3E-62 9.3E-67 537.1 52.8 465 129-628 99-631 (857)
6 PLN03081 pentatricopeptide (PP 100.0 5.4E-60 1.2E-64 508.1 52.1 464 149-630 84-568 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.6E-27 5.5E-32 267.7 60.3 477 121-613 368-894 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.1E-27 8.8E-32 266.1 61.2 468 121-605 334-819 (899)
9 PRK11447 cellulose synthase su 99.9 5E-20 1.1E-24 208.7 61.1 392 210-614 276-735 (1157)
10 PRK11447 cellulose synthase su 99.9 6E-20 1.3E-24 208.0 60.7 469 106-584 46-668 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 3.3E-20 7.1E-25 177.9 42.7 371 202-586 115-489 (966)
12 PRK11788 tetratricopeptide rep 99.9 4.6E-21 1E-25 193.8 33.1 303 212-552 44-352 (389)
13 PRK11788 tetratricopeptide rep 99.9 3.3E-20 7.1E-25 187.6 35.3 308 245-590 42-355 (389)
14 KOG4626 O-linked N-acetylgluco 99.9 2E-19 4.3E-24 172.6 38.0 431 174-621 122-570 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 1.9E-18 4E-23 183.9 48.5 399 178-584 137-573 (615)
16 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-17 4.6E-22 175.9 47.9 380 157-547 132-571 (615)
17 PRK15174 Vi polysaccharide exp 99.9 1.7E-17 3.6E-22 175.9 46.5 324 180-512 54-382 (656)
18 PRK15174 Vi polysaccharide exp 99.9 8.3E-18 1.8E-22 178.2 44.0 333 206-548 45-382 (656)
19 PRK09782 bacteriophage N4 rece 99.9 6E-16 1.3E-20 167.7 57.8 474 105-600 61-724 (987)
20 PRK10049 pgaA outer membrane p 99.9 1.9E-16 4.1E-21 171.7 50.5 385 202-597 48-470 (765)
21 PRK10049 pgaA outer membrane p 99.8 1.9E-16 4.1E-21 171.7 45.1 401 202-613 14-450 (765)
22 KOG4422 Uncharacterized conser 99.8 1.1E-15 2.5E-20 140.9 41.6 257 235-495 204-481 (625)
23 KOG2002 TPR-containing nuclear 99.8 7.8E-16 1.7E-20 156.1 44.0 457 131-598 251-759 (1018)
24 PRK14574 hmsH outer membrane p 99.8 6.8E-15 1.5E-19 156.3 52.4 394 180-583 46-480 (822)
25 PRK14574 hmsH outer membrane p 99.8 1E-14 2.3E-19 154.9 51.4 433 124-585 42-516 (822)
26 PRK09782 bacteriophage N4 rece 99.8 9.9E-14 2.2E-18 150.7 54.2 441 126-586 118-744 (987)
27 KOG2002 TPR-containing nuclear 99.8 2E-14 4.3E-19 146.1 43.7 476 129-613 177-739 (1018)
28 KOG4422 Uncharacterized conser 99.8 2.2E-14 4.8E-19 132.5 37.8 308 130-447 129-468 (625)
29 KOG1915 Cell cycle control pro 99.7 3.2E-12 6.9E-17 120.0 46.4 440 130-581 87-584 (677)
30 KOG2003 TPR repeat-containing 99.7 1E-14 2.3E-19 135.5 29.6 437 132-579 217-719 (840)
31 KOG0495 HAT repeat protein [RN 99.7 1.7E-11 3.6E-16 119.7 51.3 440 160-614 414-878 (913)
32 KOG2076 RNA polymerase III tra 99.7 3.9E-12 8.5E-17 128.9 46.6 344 124-471 147-550 (895)
33 KOG2003 TPR repeat-containing 99.6 1.3E-11 2.9E-16 115.1 37.1 424 151-583 200-690 (840)
34 PRK10747 putative protoheme IX 99.6 2.8E-12 6E-17 128.4 35.3 284 181-475 97-389 (398)
35 KOG0495 HAT repeat protein [RN 99.6 3.1E-10 6.7E-15 111.0 47.4 436 132-584 422-882 (913)
36 KOG2076 RNA polymerase III tra 99.6 2.2E-11 4.8E-16 123.5 41.2 362 180-546 151-554 (895)
37 TIGR00540 hemY_coli hemY prote 99.6 5.8E-12 1.3E-16 126.8 36.0 286 181-509 97-397 (409)
38 KOG1155 Anaphase-promoting com 99.6 4.8E-11 1E-15 112.1 38.3 368 198-582 159-536 (559)
39 TIGR00540 hemY_coli hemY prote 99.6 5.7E-12 1.2E-16 126.9 34.9 300 249-581 95-398 (409)
40 PRK10747 putative protoheme IX 99.6 7.9E-12 1.7E-16 125.1 33.5 291 215-546 96-389 (398)
41 KOG0547 Translocase of outer m 99.6 2.6E-11 5.6E-16 114.6 33.2 388 180-582 127-566 (606)
42 PF13429 TPR_15: Tetratricopep 99.6 1.8E-14 3.9E-19 137.8 11.9 259 245-509 15-275 (280)
43 KOG1126 DNA-binding cell divis 99.6 2.3E-12 4.9E-17 126.6 25.9 285 183-477 334-621 (638)
44 COG2956 Predicted N-acetylgluc 99.6 2.2E-11 4.8E-16 109.1 29.7 227 216-476 48-278 (389)
45 PF13429 TPR_15: Tetratricopep 99.6 3.5E-14 7.5E-19 135.8 12.6 259 210-474 15-275 (280)
46 COG2956 Predicted N-acetylgluc 99.5 6.1E-11 1.3E-15 106.3 30.7 285 181-509 48-345 (389)
47 KOG1126 DNA-binding cell divis 99.5 7.8E-12 1.7E-16 122.9 25.7 285 289-586 335-624 (638)
48 COG3071 HemY Uncharacterized e 99.5 2.5E-10 5.4E-15 105.8 33.5 286 181-475 97-389 (400)
49 COG3071 HemY Uncharacterized e 99.5 3.7E-10 8.1E-15 104.6 34.4 160 414-582 231-390 (400)
50 KOG1155 Anaphase-promoting com 99.5 1.3E-09 2.7E-14 102.7 38.2 314 244-583 233-554 (559)
51 KOG1915 Cell cycle control pro 99.5 4.6E-09 1E-13 99.2 41.2 424 150-584 71-538 (677)
52 KOG2047 mRNA splicing factor [ 99.5 3.5E-08 7.7E-13 96.9 47.1 471 121-607 143-711 (835)
53 KOG0547 Translocase of outer m 99.5 5.5E-10 1.2E-14 105.8 33.3 224 318-547 336-566 (606)
54 KOG4318 Bicoid mRNA stability 99.5 4.9E-11 1.1E-15 120.5 26.3 91 189-291 11-101 (1088)
55 KOG1173 Anaphase-promoting com 99.4 4.5E-09 9.7E-14 101.7 36.8 287 307-602 243-534 (611)
56 KOG2047 mRNA splicing factor [ 99.4 6.3E-08 1.4E-12 95.2 43.5 389 181-581 151-614 (835)
57 KOG4318 Bicoid mRNA stability 99.4 3.5E-09 7.6E-14 107.4 35.0 452 143-613 16-588 (1088)
58 PRK12370 invasion protein regu 99.4 6.9E-10 1.5E-14 116.3 29.8 231 202-438 255-499 (553)
59 TIGR02521 type_IV_pilW type IV 99.3 8.9E-10 1.9E-14 102.7 26.3 199 380-582 33-232 (234)
60 KOG1173 Anaphase-promoting com 99.3 4.6E-08 1E-12 94.8 37.4 284 272-563 243-532 (611)
61 PF13041 PPR_2: PPR repeat fam 99.3 4.6E-12 1E-16 84.5 6.4 50 201-250 1-50 (50)
62 KOG3785 Uncharacterized conser 99.3 2.9E-08 6.3E-13 90.4 32.4 184 415-607 288-478 (557)
63 PF12569 NARP1: NMDA receptor- 99.3 7.6E-09 1.6E-13 104.6 32.2 124 384-508 200-331 (517)
64 PRK12370 invasion protein regu 99.3 1.4E-09 3E-14 114.0 28.1 253 182-442 275-536 (553)
65 KOG1840 Kinesin light chain [C 99.3 3.5E-09 7.7E-14 105.6 29.1 249 273-580 199-477 (508)
66 KOG1129 TPR repeat-containing 99.3 1.2E-09 2.5E-14 98.3 22.5 229 207-440 227-457 (478)
67 TIGR02521 type_IV_pilW type IV 99.3 1.9E-09 4.1E-14 100.5 25.8 95 239-335 32-126 (234)
68 KOG1156 N-terminal acetyltrans 99.3 1.7E-07 3.6E-12 92.5 38.8 391 184-584 57-470 (700)
69 KOG1156 N-terminal acetyltrans 99.3 1.6E-07 3.4E-12 92.7 38.6 390 182-585 21-437 (700)
70 KOG1174 Anaphase-promoting com 99.3 8.1E-08 1.8E-12 89.4 34.5 266 272-546 231-499 (564)
71 PF12569 NARP1: NMDA receptor- 99.3 1.5E-08 3.2E-13 102.5 31.0 290 178-475 14-333 (517)
72 PF13041 PPR_2: PPR repeat fam 99.3 1.7E-11 3.6E-16 81.8 6.4 49 236-284 1-49 (50)
73 KOG3785 Uncharacterized conser 99.2 9.1E-08 2E-12 87.3 31.6 410 129-587 70-495 (557)
74 KOG1129 TPR repeat-containing 99.2 9.4E-10 2E-14 98.8 18.7 228 312-545 227-456 (478)
75 KOG2376 Signal recognition par 99.2 4.3E-06 9.4E-11 82.0 41.4 135 463-602 357-504 (652)
76 KOG1840 Kinesin light chain [C 99.2 2.4E-08 5.1E-13 99.8 26.6 244 238-509 199-477 (508)
77 KOG4162 Predicted calmodulin-b 99.2 7.8E-07 1.7E-11 89.8 36.4 446 129-584 240-785 (799)
78 KOG1174 Anaphase-promoting com 99.2 2E-06 4.4E-11 80.4 36.4 293 285-587 208-505 (564)
79 KOG2376 Signal recognition par 99.1 5.2E-06 1.1E-10 81.4 39.1 163 413-579 340-517 (652)
80 KOG0985 Vesicle coat protein c 99.1 1.8E-05 3.8E-10 82.3 43.0 181 411-614 1103-1303(1666)
81 PRK11189 lipoprotein NlpI; Pro 99.1 2.9E-07 6.3E-12 88.3 28.1 119 182-302 40-161 (296)
82 KOG0548 Molecular co-chaperone 99.1 1.4E-06 3.1E-11 84.4 32.2 387 177-583 11-456 (539)
83 COG3063 PilF Tfp pilus assembl 99.0 3.2E-07 6.8E-12 79.2 24.0 57 314-371 41-97 (250)
84 KOG4162 Predicted calmodulin-b 99.0 7.2E-06 1.6E-10 83.0 37.2 394 146-547 317-783 (799)
85 PRK11189 lipoprotein NlpI; Pro 99.0 3.1E-07 6.8E-12 88.0 27.1 187 388-583 74-266 (296)
86 cd05804 StaR_like StaR_like; a 99.0 2.1E-06 4.6E-11 85.6 33.7 198 386-583 122-337 (355)
87 KOG3617 WD40 and TPR repeat-co 99.0 1.2E-06 2.7E-11 88.6 30.5 45 128-179 740-784 (1416)
88 COG3063 PilF Tfp pilus assembl 99.0 5.4E-07 1.2E-11 77.8 24.2 198 240-475 37-235 (250)
89 cd05804 StaR_like StaR_like; a 99.0 4.5E-06 9.8E-11 83.3 34.5 309 203-547 6-336 (355)
90 PRK04841 transcriptional regul 98.9 1.2E-05 2.7E-10 91.0 40.0 393 153-548 318-761 (903)
91 PRK04841 transcriptional regul 98.9 1.1E-05 2.5E-10 91.2 39.5 338 247-584 383-762 (903)
92 KOG3616 Selective LIM binding 98.9 7.2E-06 1.6E-10 82.2 32.1 192 318-543 716-907 (1636)
93 KOG4340 Uncharacterized conser 98.9 7.9E-06 1.7E-10 73.2 28.5 278 182-471 24-334 (459)
94 KOG1914 mRNA cleavage and poly 98.8 0.00015 3.2E-09 70.8 38.8 133 200-336 17-165 (656)
95 PF04733 Coatomer_E: Coatomer 98.8 5.4E-07 1.2E-11 85.0 20.1 80 427-508 182-262 (290)
96 PF04733 Coatomer_E: Coatomer 98.8 1.8E-07 4E-12 88.2 16.1 150 317-476 111-265 (290)
97 KOG0548 Molecular co-chaperone 98.8 4.8E-05 1.1E-09 74.1 32.0 381 160-564 10-470 (539)
98 KOG1125 TPR repeat-containing 98.8 1.3E-06 2.8E-11 85.5 21.5 223 247-475 294-526 (579)
99 KOG3617 WD40 and TPR repeat-co 98.8 6.5E-06 1.4E-10 83.6 26.8 335 180-581 740-1108(1416)
100 PLN02789 farnesyltranstransfer 98.8 7.8E-06 1.7E-10 78.3 26.6 202 182-389 51-266 (320)
101 KOG0985 Vesicle coat protein c 98.8 0.00032 7E-09 73.4 39.0 398 116-573 949-1374(1666)
102 KOG4340 Uncharacterized conser 98.8 1.9E-06 4.2E-11 77.0 20.3 334 233-580 5-373 (459)
103 PLN02789 farnesyltranstransfer 98.8 1.1E-05 2.5E-10 77.2 26.9 145 207-355 41-188 (320)
104 KOG3616 Selective LIM binding 98.8 9E-05 1.9E-09 74.6 33.4 50 449-507 884-933 (1636)
105 KOG0624 dsRNA-activated protei 98.8 0.0001 2.2E-09 67.7 30.9 313 203-548 38-371 (504)
106 KOG0624 dsRNA-activated protei 98.7 5E-05 1.1E-09 69.6 28.1 298 127-477 49-371 (504)
107 KOG1127 TPR repeat-containing 98.7 0.00022 4.8E-09 74.6 35.2 437 121-579 497-993 (1238)
108 KOG1125 TPR repeat-containing 98.7 3.7E-06 7.9E-11 82.4 21.4 224 281-509 293-525 (579)
109 KOG1914 mRNA cleavage and poly 98.7 0.00042 9.2E-09 67.7 40.1 446 149-619 17-539 (656)
110 KOG1128 Uncharacterized conser 98.7 4.8E-06 1E-10 83.8 22.4 234 275-529 400-634 (777)
111 KOG1070 rRNA processing protei 98.7 7.6E-06 1.6E-10 87.9 24.9 215 381-599 1461-1680(1710)
112 PF12854 PPR_1: PPR repeat 98.7 2.4E-08 5.3E-13 59.5 4.0 32 198-229 2-33 (34)
113 KOG1070 rRNA processing protei 98.6 1.8E-05 3.9E-10 85.1 26.1 207 237-446 1457-1668(1710)
114 PF12854 PPR_1: PPR repeat 98.6 4.5E-08 9.6E-13 58.3 4.0 33 548-580 2-34 (34)
115 TIGR03302 OM_YfiO outer membra 98.6 1.2E-05 2.6E-10 74.8 20.7 181 380-583 35-233 (235)
116 KOG1127 TPR repeat-containing 98.6 0.00059 1.3E-08 71.6 33.1 110 464-578 800-909 (1238)
117 PRK14720 transcript cleavage f 98.5 2.8E-05 6.1E-10 83.0 24.5 57 382-439 120-176 (906)
118 COG5010 TadD Flp pilus assembl 98.5 1.3E-05 2.7E-10 71.1 18.2 132 201-335 98-229 (257)
119 PRK10370 formate-dependent nit 98.5 2.5E-05 5.4E-10 69.6 19.9 120 391-512 52-174 (198)
120 PRK10370 formate-dependent nit 98.5 3.8E-05 8.3E-10 68.4 20.3 118 216-336 52-172 (198)
121 TIGR03302 OM_YfiO outer membra 98.5 2.7E-05 5.9E-10 72.4 20.4 186 342-547 32-232 (235)
122 KOG1128 Uncharacterized conser 98.5 4.3E-05 9.3E-10 77.2 22.3 193 375-587 395-587 (777)
123 PRK14720 transcript cleavage f 98.5 0.00011 2.3E-09 78.8 25.8 232 151-423 30-268 (906)
124 COG4783 Putative Zn-dependent 98.4 0.00035 7.5E-09 67.8 25.9 146 388-556 316-462 (484)
125 KOG3081 Vesicle coat complex C 98.4 0.00032 6.8E-09 62.4 23.3 116 390-509 149-269 (299)
126 COG5010 TadD Flp pilus assembl 98.4 6.8E-05 1.5E-09 66.6 19.1 157 279-438 72-228 (257)
127 PRK15179 Vi polysaccharide bio 98.4 9.9E-05 2.1E-09 78.2 23.6 119 180-301 98-216 (694)
128 PRK15359 type III secretion sy 98.4 4.4E-05 9.5E-10 64.2 16.5 96 206-303 27-122 (144)
129 COG4783 Putative Zn-dependent 98.3 0.00077 1.7E-08 65.4 26.3 139 249-408 317-455 (484)
130 KOG2053 Mitochondrial inherita 98.3 0.0062 1.4E-07 63.6 44.8 223 131-375 24-258 (932)
131 KOG3081 Vesicle coat complex C 98.3 0.00032 6.9E-09 62.4 21.5 251 315-583 15-272 (299)
132 PRK15179 Vi polysaccharide bio 98.3 0.00034 7.4E-09 74.3 25.3 133 342-476 85-217 (694)
133 KOG3060 Uncharacterized conser 98.3 0.00078 1.7E-08 59.5 22.8 152 322-475 26-182 (289)
134 PRK15359 type III secretion sy 98.3 9.1E-05 2E-09 62.3 17.0 95 415-511 27-121 (144)
135 KOG3060 Uncharacterized conser 98.1 0.0038 8.2E-08 55.4 23.5 186 183-373 27-221 (289)
136 TIGR02552 LcrH_SycD type III s 98.1 0.00024 5.2E-09 59.4 15.8 98 411-510 16-113 (135)
137 TIGR02552 LcrH_SycD type III s 98.1 0.00018 3.8E-09 60.2 14.8 92 243-336 22-113 (135)
138 TIGR00756 PPR pentatricopeptid 98.1 5.7E-06 1.2E-10 50.2 3.9 33 205-237 2-34 (35)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00023 4.9E-09 69.7 15.6 124 206-335 172-295 (395)
140 TIGR00756 PPR pentatricopeptid 98.0 1.1E-05 2.4E-10 48.9 4.3 33 310-342 2-34 (35)
141 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.3E-10 48.6 3.9 32 205-236 3-34 (34)
142 PF09976 TPR_21: Tetratricopep 98.0 0.00045 9.7E-09 58.4 15.0 118 459-579 23-144 (145)
143 PF10037 MRP-S27: Mitochondria 97.9 0.00013 2.8E-09 71.7 12.6 122 235-356 63-186 (429)
144 KOG2041 WD40 repeat protein [G 97.9 0.024 5.2E-07 57.6 27.9 83 518-600 1021-1104(1189)
145 PF09976 TPR_21: Tetratricopep 97.9 0.00077 1.7E-08 56.9 15.6 86 455-543 56-143 (145)
146 PF13812 PPR_3: Pentatricopept 97.9 1.7E-05 3.7E-10 47.6 4.0 33 413-445 2-34 (34)
147 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00047 1E-08 67.6 15.5 125 379-508 170-294 (395)
148 KOG0550 Molecular chaperone (D 97.8 0.017 3.7E-07 55.1 23.4 107 420-528 257-367 (486)
149 PF08579 RPM2: Mitochondrial r 97.8 0.00029 6.2E-09 53.9 9.8 77 208-284 30-115 (120)
150 PF12895 Apc3: Anaphase-promot 97.8 6.4E-05 1.4E-09 56.6 6.2 82 495-578 2-83 (84)
151 PF14938 SNAP: Soluble NSF att 97.8 0.014 3.1E-07 55.6 23.3 150 415-580 97-264 (282)
152 PF10037 MRP-S27: Mitochondria 97.8 0.00049 1.1E-08 67.7 13.3 122 200-321 63-186 (429)
153 PF01535 PPR: PPR repeat; Int 97.8 3.5E-05 7.5E-10 45.1 3.3 29 205-233 2-30 (31)
154 PF01535 PPR: PPR repeat; Int 97.7 4.8E-05 1E-09 44.5 3.5 29 310-338 2-30 (31)
155 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0012 2.6E-08 53.6 13.1 100 485-584 5-107 (119)
156 cd00189 TPR Tetratricopeptide 97.7 0.0007 1.5E-08 52.1 11.3 96 485-583 3-98 (100)
157 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.002 4.2E-08 52.3 14.2 98 450-547 5-105 (119)
158 KOG2053 Mitochondrial inherita 97.7 0.1 2.3E-06 55.0 45.5 162 414-580 438-606 (932)
159 PF08579 RPM2: Mitochondrial r 97.7 0.00095 2.1E-08 51.2 10.8 78 242-319 29-115 (120)
160 PRK15363 pathogenicity island 97.7 0.0072 1.6E-07 50.2 16.9 99 416-516 39-137 (157)
161 PF07079 DUF1347: Protein of u 97.7 0.061 1.3E-06 52.1 38.8 205 344-558 299-530 (549)
162 cd00189 TPR Tetratricopeptide 97.6 0.0009 2E-08 51.5 11.2 92 207-300 4-95 (100)
163 PF14938 SNAP: Soluble NSF att 97.6 0.014 3E-07 55.7 21.0 114 244-372 100-225 (282)
164 PF06239 ECSIT: Evolutionarily 97.6 0.0013 2.9E-08 57.1 12.2 110 149-288 44-153 (228)
165 PRK10866 outer membrane biogen 97.6 0.019 4.1E-07 53.0 20.8 173 389-581 43-240 (243)
166 PF06239 ECSIT: Evolutionarily 97.5 0.0016 3.4E-08 56.7 11.2 104 201-323 45-153 (228)
167 KOG0550 Molecular chaperone (D 97.5 0.097 2.1E-06 50.2 24.9 261 183-476 64-350 (486)
168 COG4700 Uncharacterized protei 97.5 0.033 7.1E-07 47.1 18.4 135 443-579 85-219 (251)
169 PF05843 Suf: Suppressor of fo 97.5 0.0027 5.9E-08 60.2 14.1 131 204-337 2-136 (280)
170 PRK10866 outer membrane biogen 97.5 0.033 7.1E-07 51.5 20.8 59 279-337 38-98 (243)
171 PF05843 Suf: Suppressor of fo 97.5 0.0021 4.6E-08 61.0 13.2 85 461-546 50-135 (280)
172 PRK15363 pathogenicity island 97.5 0.0038 8.3E-08 51.8 12.6 95 206-302 38-132 (157)
173 CHL00033 ycf3 photosystem I as 97.4 0.0037 8.1E-08 54.4 13.1 94 239-333 36-138 (168)
174 PF12895 Apc3: Anaphase-promot 97.4 0.0004 8.7E-09 52.2 5.7 20 244-263 31-50 (84)
175 PRK02603 photosystem I assembl 97.4 0.0072 1.6E-07 52.8 14.3 97 486-583 39-150 (172)
176 KOG1130 Predicted G-alpha GTPa 97.4 0.0041 8.9E-08 58.9 12.9 99 412-510 235-343 (639)
177 PLN03088 SGT1, suppressor of 97.4 0.0063 1.4E-07 60.0 15.2 88 213-302 12-99 (356)
178 PLN03088 SGT1, suppressor of 97.3 0.0058 1.3E-07 60.2 14.7 102 245-350 9-110 (356)
179 PRK02603 photosystem I assembl 97.3 0.012 2.7E-07 51.3 15.2 93 202-295 34-128 (172)
180 PRK10153 DNA-binding transcrip 97.3 0.017 3.6E-07 59.7 18.3 139 444-586 334-486 (517)
181 PRK10153 DNA-binding transcrip 97.3 0.02 4.2E-07 59.2 18.4 121 394-516 358-487 (517)
182 KOG0553 TPR repeat-containing 97.3 0.0097 2.1E-07 54.4 13.9 95 213-311 91-185 (304)
183 COG4235 Cytochrome c biogenesi 97.3 0.03 6.4E-07 51.7 16.8 111 479-592 153-266 (287)
184 KOG2041 WD40 repeat protein [G 97.2 0.31 6.6E-06 50.0 28.1 205 200-438 689-904 (1189)
185 CHL00033 ycf3 photosystem I as 97.2 0.0067 1.5E-07 52.8 12.6 96 202-298 34-138 (168)
186 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.24 5.2E-06 48.1 32.1 130 448-582 398-531 (660)
187 KOG1130 Predicted G-alpha GTPa 97.2 0.004 8.6E-08 59.0 10.9 133 449-581 197-343 (639)
188 PF13432 TPR_16: Tetratricopep 97.1 0.0026 5.7E-08 44.9 7.3 59 524-583 3-61 (65)
189 KOG2796 Uncharacterized conser 97.1 0.095 2.1E-06 47.0 17.8 132 205-337 179-315 (366)
190 PF13414 TPR_11: TPR repeat; P 97.1 0.0025 5.4E-08 45.7 6.9 63 519-582 4-67 (69)
191 PF14559 TPR_19: Tetratricopep 97.1 0.0022 4.8E-08 45.8 6.5 62 390-453 3-64 (68)
192 PF12688 TPR_5: Tetratrico pep 97.0 0.03 6.6E-07 44.8 13.1 55 457-511 11-67 (120)
193 PF04840 Vps16_C: Vps16, C-ter 97.0 0.34 7.4E-06 46.6 27.9 109 414-543 179-287 (319)
194 PRK10803 tol-pal system protei 97.0 0.016 3.4E-07 54.0 13.0 100 485-584 146-248 (263)
195 KOG0553 TPR repeat-containing 97.0 0.0084 1.8E-07 54.8 10.7 70 381-452 118-187 (304)
196 PF13432 TPR_16: Tetratricopep 97.0 0.0028 6.2E-08 44.7 6.4 55 386-440 5-59 (65)
197 KOG1538 Uncharacterized conser 96.9 0.17 3.8E-06 51.3 19.8 93 201-298 554-657 (1081)
198 PF14559 TPR_19: Tetratricopep 96.9 0.0034 7.4E-08 44.8 6.4 48 252-300 5-52 (68)
199 PF13281 DUF4071: Domain of un 96.9 0.37 8.1E-06 46.9 21.6 37 551-587 303-339 (374)
200 PF13281 DUF4071: Domain of un 96.9 0.28 6.1E-06 47.7 20.8 33 516-548 303-335 (374)
201 PF13525 YfiO: Outer membrane 96.9 0.11 2.5E-06 46.6 17.4 164 389-573 16-198 (203)
202 PF07079 DUF1347: Protein of u 96.9 0.48 1.1E-05 46.3 37.4 49 529-579 473-521 (549)
203 PF13525 YfiO: Outer membrane 96.8 0.27 5.8E-06 44.2 19.2 24 278-301 47-70 (203)
204 PF09205 DUF1955: Domain of un 96.8 0.095 2.1E-06 41.6 13.5 134 286-443 15-151 (161)
205 COG4235 Cytochrome c biogenesi 96.8 0.1 2.2E-06 48.2 15.7 99 202-302 155-256 (287)
206 KOG2114 Vacuolar assembly/sort 96.7 0.61 1.3E-05 49.2 22.2 59 524-586 711-773 (933)
207 PF12688 TPR_5: Tetratrico pep 96.7 0.14 3E-06 41.0 14.3 55 212-266 10-66 (120)
208 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.066 1.4E-06 52.7 14.5 62 447-510 75-140 (453)
209 KOG2796 Uncharacterized conser 96.6 0.55 1.2E-05 42.4 22.3 132 310-441 179-315 (366)
210 PF03704 BTAD: Bacterial trans 96.5 0.1 2.2E-06 44.0 13.7 58 206-264 65-122 (146)
211 PRK10803 tol-pal system protei 96.5 0.072 1.6E-06 49.7 13.5 98 450-547 146-246 (263)
212 PF13371 TPR_9: Tetratricopept 96.4 0.013 2.9E-07 42.4 6.7 58 526-584 3-60 (73)
213 PF03704 BTAD: Bacterial trans 96.4 0.1 2.3E-06 44.0 13.0 68 522-590 66-138 (146)
214 PF12921 ATP13: Mitochondrial 96.4 0.059 1.3E-06 43.7 10.4 52 478-529 48-99 (126)
215 PF04840 Vps16_C: Vps16, C-ter 96.3 1.2 2.5E-05 43.0 30.0 111 448-579 178-288 (319)
216 PF13424 TPR_12: Tetratricopep 96.3 0.02 4.4E-07 42.1 7.0 27 483-509 6-32 (78)
217 COG4700 Uncharacterized protei 96.3 0.62 1.3E-05 39.7 19.3 127 201-329 87-214 (251)
218 PF13371 TPR_9: Tetratricopept 96.2 0.028 6E-07 40.7 7.4 55 387-441 4-58 (73)
219 KOG1538 Uncharacterized conser 96.2 1.7 3.8E-05 44.5 22.6 199 154-369 587-799 (1081)
220 COG1729 Uncharacterized protei 96.2 0.082 1.8E-06 48.2 11.5 95 485-582 145-244 (262)
221 PF04184 ST7: ST7 protein; In 96.2 0.45 9.8E-06 47.2 17.0 63 485-547 262-324 (539)
222 COG3118 Thioredoxin domain-con 96.1 0.89 1.9E-05 42.1 17.6 120 389-511 145-265 (304)
223 KOG2280 Vacuolar assembly/sort 96.0 2.4 5.2E-05 44.4 30.2 83 415-507 687-769 (829)
224 COG5107 RNA14 Pre-mRNA 3'-end 96.0 1.8 3.9E-05 42.4 32.6 405 188-610 29-522 (660)
225 KOG1258 mRNA processing protei 96.0 2.3 4.9E-05 43.5 33.6 175 388-568 307-490 (577)
226 PRK15331 chaperone protein Sic 96.0 0.24 5.1E-06 41.7 12.2 85 390-475 49-133 (165)
227 PF09205 DUF1955: Domain of un 95.9 0.65 1.4E-05 37.1 14.9 61 523-584 91-151 (161)
228 PF13424 TPR_12: Tetratricopep 95.9 0.026 5.6E-07 41.5 6.1 63 519-581 6-74 (78)
229 PF12921 ATP13: Mitochondrial 95.9 0.14 3E-06 41.5 10.5 53 512-564 46-99 (126)
230 COG3898 Uncharacterized membra 95.9 1.8 3.8E-05 41.7 33.7 263 202-476 117-392 (531)
231 KOG1920 IkappaB kinase complex 95.9 2.5 5.4E-05 46.8 22.3 26 241-266 793-820 (1265)
232 COG3898 Uncharacterized membra 95.9 1.8 3.9E-05 41.6 31.0 123 206-335 85-215 (531)
233 PF04053 Coatomer_WDAD: Coatom 95.9 0.24 5.2E-06 50.1 14.3 146 129-297 274-426 (443)
234 PRK15331 chaperone protein Sic 95.8 0.44 9.6E-06 40.1 13.2 88 282-371 46-133 (165)
235 KOG3941 Intermediate in Toll s 95.8 0.055 1.2E-06 49.0 8.3 110 149-288 64-173 (406)
236 PF10300 DUF3808: Protein of u 95.7 0.64 1.4E-05 47.8 17.0 120 180-301 200-333 (468)
237 KOG3941 Intermediate in Toll s 95.7 0.2 4.3E-06 45.6 11.3 115 201-334 65-185 (406)
238 KOG1585 Protein required for f 95.6 1.5 3.4E-05 39.2 17.7 147 413-576 92-250 (308)
239 smart00299 CLH Clathrin heavy 95.6 1.1 2.4E-05 37.3 15.5 32 394-425 23-54 (140)
240 KOG2610 Uncharacterized conser 95.6 1.2 2.6E-05 41.8 16.1 116 285-403 115-234 (491)
241 KOG1920 IkappaB kinase complex 95.6 4.9 0.00011 44.6 25.6 154 392-580 894-1053(1265)
242 smart00299 CLH Clathrin heavy 95.6 0.92 2E-05 37.8 14.9 120 177-319 16-136 (140)
243 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.095 2.1E-06 51.6 9.7 118 481-602 74-194 (453)
244 KOG1924 RhoA GTPase effector D 95.5 0.034 7.4E-07 57.1 6.8 14 308-321 838-851 (1102)
245 PF04053 Coatomer_WDAD: Coatom 95.5 0.33 7.1E-06 49.1 13.8 133 203-368 295-427 (443)
246 PF10300 DUF3808: Protein of u 95.5 0.76 1.7E-05 47.2 16.8 118 391-509 246-374 (468)
247 COG4105 ComL DNA uptake lipopr 95.4 2 4.3E-05 39.1 19.2 172 389-583 45-234 (254)
248 KOG1941 Acetylcholine receptor 95.3 1.1 2.3E-05 42.6 15.0 127 453-579 128-272 (518)
249 PF07035 Mic1: Colon cancer-as 95.3 1.3 2.9E-05 37.7 14.5 55 556-616 92-146 (167)
250 PF08631 SPO22: Meiosis protei 95.2 2.9 6.3E-05 39.7 26.0 46 396-441 105-150 (278)
251 KOG2114 Vacuolar assembly/sort 95.2 1.6 3.4E-05 46.3 17.4 140 282-438 377-516 (933)
252 KOG0543 FKBP-type peptidyl-pro 95.2 0.42 9.1E-06 46.1 12.5 139 350-511 215-355 (397)
253 COG1729 Uncharacterized protei 95.2 0.35 7.5E-06 44.2 11.4 98 449-547 144-244 (262)
254 KOG2280 Vacuolar assembly/sort 95.1 5.3 0.00012 42.0 33.5 324 231-576 425-793 (829)
255 KOG4555 TPR repeat-containing 95.0 0.68 1.5E-05 36.8 11.0 92 387-478 52-146 (175)
256 PF04184 ST7: ST7 protein; In 94.9 2.2 4.7E-05 42.7 16.6 165 425-605 181-346 (539)
257 COG0457 NrfG FOG: TPR repeat [ 94.9 2.9 6.3E-05 38.1 29.7 196 386-584 67-267 (291)
258 PF13170 DUF4003: Protein of u 94.9 0.91 2E-05 43.2 13.9 130 184-315 78-224 (297)
259 KOG0543 FKBP-type peptidyl-pro 94.8 0.59 1.3E-05 45.2 12.3 63 521-584 260-322 (397)
260 COG0457 NrfG FOG: TPR repeat [ 94.6 3.4 7.4E-05 37.6 29.1 157 389-547 106-265 (291)
261 KOG4234 TPR repeat-containing 94.6 0.88 1.9E-05 39.3 11.5 94 491-585 104-200 (271)
262 KOG0687 26S proteasome regulat 94.6 4.1 8.8E-05 38.3 22.4 99 412-512 104-211 (393)
263 COG4649 Uncharacterized protei 94.5 2.7 5.7E-05 35.6 13.7 133 205-338 61-197 (221)
264 KOG4555 TPR repeat-containing 94.5 0.89 1.9E-05 36.2 10.4 91 491-583 52-145 (175)
265 PRK11906 transcriptional regul 94.4 3.2 6.9E-05 41.4 16.6 81 464-547 321-401 (458)
266 COG4105 ComL DNA uptake lipopr 94.4 4 8.6E-05 37.2 20.7 57 314-371 173-232 (254)
267 KOG2610 Uncharacterized conser 94.3 4.4 9.6E-05 38.2 16.1 152 215-368 115-272 (491)
268 COG3118 Thioredoxin domain-con 94.2 4.7 0.0001 37.5 17.3 57 245-302 141-197 (304)
269 COG4649 Uncharacterized protei 93.9 3.5 7.6E-05 34.9 15.4 123 389-511 69-196 (221)
270 KOG1550 Extracellular protein 93.7 11 0.00024 39.9 25.9 182 184-375 228-429 (552)
271 PF08631 SPO22: Meiosis protei 93.6 6.9 0.00015 37.2 26.3 134 206-342 39-191 (278)
272 PF13512 TPR_18: Tetratricopep 93.4 2.9 6.2E-05 34.4 12.0 55 529-584 21-78 (142)
273 PF07035 Mic1: Colon cancer-as 93.4 4.5 9.8E-05 34.5 15.2 31 191-221 17-47 (167)
274 KOG1585 Protein required for f 93.2 6.2 0.00013 35.6 17.1 148 450-614 94-251 (308)
275 PF10602 RPN7: 26S proteasome 93.2 5.1 0.00011 34.9 14.2 99 413-511 37-142 (177)
276 PF13170 DUF4003: Protein of u 93.1 8.4 0.00018 36.8 20.4 153 428-582 78-250 (297)
277 KOG0276 Vesicle coat complex C 93.0 2.3 5.1E-05 43.3 13.0 100 213-333 647-746 (794)
278 KOG1924 RhoA GTPase effector D 92.9 0.36 7.8E-06 50.1 7.5 17 342-358 837-853 (1102)
279 PF13428 TPR_14: Tetratricopep 92.9 0.34 7.4E-06 30.7 5.0 34 384-417 7-40 (44)
280 PF02259 FAT: FAT domain; Int 92.9 11 0.00023 37.4 23.3 63 413-475 147-212 (352)
281 PRK11906 transcriptional regul 92.8 11 0.00025 37.7 17.5 148 183-333 273-432 (458)
282 COG3629 DnrI DNA-binding trans 92.8 1.8 3.9E-05 40.3 11.4 77 205-282 155-236 (280)
283 PF13428 TPR_14: Tetratricopep 92.8 0.41 8.8E-06 30.3 5.3 27 276-302 4-30 (44)
284 KOG0890 Protein kinase of the 92.5 32 0.00069 41.9 24.9 318 243-584 1388-1733(2382)
285 COG3629 DnrI DNA-binding trans 92.2 1.8 3.9E-05 40.3 10.6 81 238-319 153-238 (280)
286 KOG2066 Vacuolar assembly/sort 92.1 19 0.0004 38.4 26.1 151 174-335 362-532 (846)
287 COG2976 Uncharacterized protei 92.1 7.5 0.00016 33.8 13.8 94 489-584 96-190 (207)
288 PF13929 mRNA_stabil: mRNA sta 92.0 10 0.00023 35.3 16.5 145 206-353 134-288 (292)
289 PF13512 TPR_18: Tetratricopep 91.9 3.5 7.5E-05 34.0 10.6 52 182-233 24-77 (142)
290 COG3947 Response regulator con 91.8 11 0.00023 35.1 15.2 163 132-300 149-340 (361)
291 PF09613 HrpB1_HrpK: Bacterial 91.7 6.8 0.00015 33.0 12.3 52 458-511 21-73 (160)
292 KOG1258 mRNA processing protei 91.6 18 0.0004 37.3 34.0 121 412-538 297-420 (577)
293 COG4785 NlpI Lipoprotein NlpI, 91.5 9.4 0.0002 33.8 16.9 199 389-602 76-283 (297)
294 PF13431 TPR_17: Tetratricopep 91.3 0.3 6.5E-06 28.9 3.0 32 401-432 2-33 (34)
295 PF13176 TPR_7: Tetratricopept 91.0 0.58 1.3E-05 28.0 4.2 26 555-580 1-26 (36)
296 PF13176 TPR_7: Tetratricopept 91.0 0.53 1.2E-05 28.2 4.0 24 485-508 2-25 (36)
297 PF10602 RPN7: 26S proteasome 90.8 4 8.6E-05 35.6 10.8 60 205-264 38-99 (177)
298 KOG1941 Acetylcholine receptor 90.7 16 0.00036 35.0 22.5 232 215-474 18-273 (518)
299 KOG1550 Extracellular protein 90.5 26 0.00057 37.1 25.9 134 203-340 288-429 (552)
300 PF00637 Clathrin: Region in C 90.5 0.066 1.4E-06 45.0 -0.4 53 280-332 14-66 (143)
301 COG1747 Uncharacterized N-term 90.5 21 0.00046 36.0 23.9 182 375-563 63-249 (711)
302 COG2909 MalT ATP-dependent tra 90.4 30 0.00066 37.6 27.0 199 388-586 425-651 (894)
303 PF13431 TPR_17: Tetratricopep 89.9 0.43 9.2E-06 28.2 2.8 31 542-573 3-33 (34)
304 PF09613 HrpB1_HrpK: Bacterial 89.8 11 0.00024 31.7 13.6 84 182-269 24-108 (160)
305 KOG4570 Uncharacterized conser 89.7 4.9 0.00011 37.6 10.5 103 481-585 63-167 (418)
306 COG4785 NlpI Lipoprotein NlpI, 89.5 15 0.00032 32.7 15.2 31 273-303 99-129 (297)
307 PF10345 Cohesin_load: Cohesin 89.4 35 0.00075 36.9 40.9 192 389-581 372-605 (608)
308 KOG2066 Vacuolar assembly/sort 89.4 34 0.00073 36.6 27.0 102 210-320 363-467 (846)
309 COG1747 Uncharacterized N-term 88.9 29 0.00062 35.2 25.9 166 340-511 63-234 (711)
310 KOG4570 Uncharacterized conser 88.5 5.4 0.00012 37.3 10.0 104 197-302 58-164 (418)
311 KOG4648 Uncharacterized conser 87.1 4.5 9.7E-05 38.2 8.8 90 490-583 105-195 (536)
312 TIGR02508 type_III_yscG type I 87.1 6.7 0.00014 29.8 7.9 48 180-233 51-98 (115)
313 PRK15180 Vi polysaccharide bio 86.6 37 0.0008 34.0 15.5 122 354-477 300-421 (831)
314 KOG2063 Vacuolar assembly/sort 85.7 64 0.0014 35.8 20.6 115 206-320 507-638 (877)
315 KOG1586 Protein required for f 85.6 27 0.00058 31.5 19.5 58 529-586 165-228 (288)
316 PF04190 DUF410: Protein of un 85.5 32 0.00069 32.2 19.1 27 480-506 88-114 (260)
317 PF00515 TPR_1: Tetratricopept 85.5 2.5 5.4E-05 24.6 4.4 28 555-582 3-30 (34)
318 PF02259 FAT: FAT domain; Int 85.3 40 0.00087 33.2 18.0 64 518-581 146-212 (352)
319 PRK11619 lytic murein transgly 85.1 61 0.0013 35.1 30.2 79 463-545 295-373 (644)
320 TIGR02561 HrpB1_HrpK type III 85.1 21 0.00045 29.7 11.8 51 181-233 23-74 (153)
321 KOG2063 Vacuolar assembly/sort 85.0 68 0.0015 35.6 19.1 27 310-336 506-532 (877)
322 PF07719 TPR_2: Tetratricopept 84.9 2.7 5.9E-05 24.3 4.4 29 555-583 3-31 (34)
323 PF13929 mRNA_stabil: mRNA sta 84.9 34 0.00075 32.1 15.4 140 251-390 141-290 (292)
324 TIGR02561 HrpB1_HrpK type III 84.1 23 0.0005 29.4 11.6 52 458-511 21-73 (153)
325 KOG2471 TPR repeat-containing 84.0 22 0.00049 35.6 12.2 107 458-566 251-382 (696)
326 PF13374 TPR_10: Tetratricopep 84.0 3 6.4E-05 25.6 4.6 28 554-581 3-30 (42)
327 PF13374 TPR_10: Tetratricopep 83.9 2.7 5.7E-05 25.8 4.3 27 483-509 3-29 (42)
328 COG2909 MalT ATP-dependent tra 83.7 73 0.0016 34.9 27.7 222 354-578 426-684 (894)
329 PF11207 DUF2989: Protein of u 83.7 31 0.00066 30.5 14.6 72 255-327 123-197 (203)
330 KOG2391 Vacuolar sorting prote 83.4 42 0.00091 31.9 14.4 48 202-250 298-345 (365)
331 TIGR03504 FimV_Cterm FimV C-te 83.3 2.7 5.7E-05 26.6 3.9 27 158-184 5-31 (44)
332 TIGR02508 type_III_yscG type I 83.3 18 0.00039 27.6 9.2 51 527-583 48-98 (115)
333 PF00515 TPR_1: Tetratricopept 82.7 3.6 7.9E-05 23.9 4.3 26 484-509 3-28 (34)
334 PF00637 Clathrin: Region in C 82.6 0.57 1.2E-05 39.2 1.0 83 244-333 13-95 (143)
335 KOG0276 Vesicle coat complex C 82.5 23 0.0005 36.6 11.9 99 389-507 648-746 (794)
336 COG4455 ImpE Protein of avirul 82.4 12 0.00025 33.3 8.6 77 484-562 3-81 (273)
337 PF07163 Pex26: Pex26 protein; 82.3 14 0.0003 34.2 9.4 86 350-435 90-181 (309)
338 PF04097 Nic96: Nup93/Nic96; 81.9 80 0.0017 34.1 17.2 41 244-285 117-157 (613)
339 PF11207 DUF2989: Protein of u 81.7 14 0.00031 32.5 9.0 73 429-502 123-198 (203)
340 KOG0687 26S proteasome regulat 81.3 51 0.0011 31.4 13.8 95 484-580 106-208 (393)
341 PF14669 Asp_Glu_race_2: Putat 81.1 36 0.00079 29.6 15.7 56 452-507 137-206 (233)
342 PF02284 COX5A: Cytochrome c o 81.0 23 0.00049 27.2 9.0 46 221-266 28-73 (108)
343 cd00923 Cyt_c_Oxidase_Va Cytoc 80.9 10 0.00023 28.6 6.7 48 323-370 22-69 (103)
344 cd00923 Cyt_c_Oxidase_Va Cytoc 80.7 12 0.00027 28.2 7.0 45 221-265 25-69 (103)
345 PF08424 NRDE-2: NRDE-2, neces 80.0 62 0.0013 31.5 16.4 119 429-549 48-185 (321)
346 PF07719 TPR_2: Tetratricopept 79.9 5.8 0.00013 22.9 4.5 25 485-509 4-28 (34)
347 COG4455 ImpE Protein of avirul 79.9 14 0.00031 32.8 8.3 76 206-282 4-81 (273)
348 PF13181 TPR_8: Tetratricopept 79.1 6.2 0.00013 22.8 4.5 29 554-582 2-30 (34)
349 PF10579 Rapsyn_N: Rapsyn N-te 78.7 7.8 0.00017 28.0 5.3 17 495-511 19-35 (80)
350 KOG1464 COP9 signalosome, subu 78.6 55 0.0012 30.2 23.6 184 215-398 39-251 (440)
351 PHA02875 ankyrin repeat protei 78.2 77 0.0017 32.2 15.0 11 592-602 350-360 (413)
352 PHA02875 ankyrin repeat protei 78.2 83 0.0018 32.0 16.0 76 213-296 9-88 (413)
353 PF02284 COX5A: Cytochrome c o 78.1 29 0.00063 26.7 10.0 51 465-515 28-78 (108)
354 PF13181 TPR_8: Tetratricopept 78.0 6.3 0.00014 22.8 4.3 27 484-510 3-29 (34)
355 PF13762 MNE1: Mitochondrial s 77.6 40 0.00087 28.0 11.7 82 205-286 41-128 (145)
356 TIGR03504 FimV_Cterm FimV C-te 77.3 4.9 0.00011 25.4 3.6 26 558-583 4-29 (44)
357 KOG1114 Tripeptidyl peptidase 77.1 1.3E+02 0.0027 33.5 15.6 39 482-520 1231-1269(1304)
358 PF10366 Vps39_1: Vacuolar sor 76.0 23 0.0005 27.8 8.0 26 206-231 42-67 (108)
359 COG5187 RPN7 26S proteasome re 75.8 70 0.0015 29.9 11.8 118 481-602 114-239 (412)
360 PRK09687 putative lyase; Provi 75.6 75 0.0016 30.2 26.4 37 524-563 241-277 (280)
361 KOG4648 Uncharacterized conser 75.3 20 0.00044 34.1 8.5 87 388-475 107-193 (536)
362 KOG1498 26S proteasome regulat 74.8 89 0.0019 30.7 15.8 67 456-522 180-252 (439)
363 KOG4234 TPR repeat-containing 74.6 35 0.00075 30.0 9.0 88 422-511 105-197 (271)
364 COG5187 RPN7 26S proteasome re 74.1 78 0.0017 29.6 18.5 99 411-511 114-221 (412)
365 PF13174 TPR_6: Tetratricopept 74.1 6.4 0.00014 22.4 3.5 25 558-582 5-29 (33)
366 KOG0403 Neoplastic transformat 74.0 1E+02 0.0022 30.9 27.3 64 521-585 512-575 (645)
367 PF07163 Pex26: Pex26 protein; 73.4 45 0.00098 31.0 10.0 87 417-505 88-181 (309)
368 PF07721 TPR_4: Tetratricopept 72.2 5.8 0.00012 21.5 2.7 21 557-577 5-25 (26)
369 PRK09687 putative lyase; Provi 72.0 92 0.002 29.6 28.8 146 201-358 66-221 (280)
370 PF10579 Rapsyn_N: Rapsyn N-te 71.8 14 0.0003 26.8 5.1 47 459-505 18-66 (80)
371 PF13174 TPR_6: Tetratricopept 71.6 7.2 0.00016 22.2 3.4 22 489-510 7-28 (33)
372 PF04097 Nic96: Nup93/Nic96; 71.3 1.6E+02 0.0034 31.9 26.2 43 208-251 116-158 (613)
373 KOG0890 Protein kinase of the 70.4 2.8E+02 0.0062 34.6 28.8 86 210-297 1456-1542(2382)
374 KOG1923 Rac1 GTPase effector F 69.9 14 0.00031 39.0 6.9 11 575-585 770-780 (830)
375 COG5159 RPN6 26S proteasome re 69.6 99 0.0021 28.9 16.9 97 416-512 129-236 (421)
376 PF06552 TOM20_plant: Plant sp 68.6 40 0.00086 29.2 8.1 28 463-492 96-123 (186)
377 KOG2908 26S proteasome regulat 68.4 64 0.0014 30.9 10.1 52 457-508 85-141 (380)
378 PF04910 Tcf25: Transcriptiona 68.2 1.3E+02 0.0028 29.8 19.4 152 167-336 9-167 (360)
379 KOG2908 26S proteasome regulat 67.7 1.2E+02 0.0026 29.2 11.9 86 486-571 79-175 (380)
380 PF06552 TOM20_plant: Plant sp 66.6 87 0.0019 27.2 11.1 77 394-478 51-138 (186)
381 COG3947 Response regulator con 66.5 1.2E+02 0.0025 28.7 16.6 58 522-580 283-340 (361)
382 KOG2471 TPR repeat-containing 66.2 1.6E+02 0.0034 30.0 13.0 105 388-494 250-381 (696)
383 PF11848 DUF3368: Domain of un 66.0 24 0.00052 22.8 5.0 34 177-210 11-44 (48)
384 KOG3364 Membrane protein invol 65.4 33 0.00072 28.0 6.6 62 524-585 38-103 (149)
385 cd00280 TRFH Telomeric Repeat 65.1 72 0.0016 27.7 8.9 23 559-581 117-139 (200)
386 KOG3807 Predicted membrane pro 64.1 1.4E+02 0.003 28.6 13.6 17 459-475 287-303 (556)
387 PF07575 Nucleopor_Nup85: Nup8 63.6 2.1E+02 0.0046 30.6 19.5 25 152-177 149-173 (566)
388 KOG0403 Neoplastic transformat 63.1 1.7E+02 0.0037 29.4 20.9 23 522-544 349-371 (645)
389 PRK13342 recombination factor 62.6 1.8E+02 0.004 29.5 17.9 46 416-461 231-279 (413)
390 KOG0307 Vesicle coat complex C 60.8 2.9E+02 0.0064 31.3 16.4 50 138-189 984-1033(1049)
391 PF07575 Nucleopor_Nup85: Nup8 60.6 26 0.00056 37.4 7.1 94 204-301 373-466 (566)
392 PF10366 Vps39_1: Vacuolar sor 60.5 81 0.0018 24.8 9.6 27 555-581 41-67 (108)
393 PF11846 DUF3366: Domain of un 60.4 22 0.00048 31.5 5.7 53 128-180 120-172 (193)
394 PF14689 SPOB_a: Sensor_kinase 60.2 26 0.00056 24.2 4.7 29 552-580 22-50 (62)
395 PF11848 DUF3368: Domain of un 60.2 35 0.00077 22.0 5.0 29 251-279 15-43 (48)
396 PF11838 ERAP1_C: ERAP1-like C 60.1 1.7E+02 0.0037 28.3 20.0 81 254-337 146-230 (324)
397 PRK07003 DNA polymerase III su 59.9 2.8E+02 0.006 30.7 15.5 97 134-236 182-278 (830)
398 KOG2659 LisH motif-containing 59.9 1.2E+02 0.0025 27.5 9.7 65 443-509 22-91 (228)
399 PF10345 Cohesin_load: Cohesin 59.2 2.6E+02 0.0057 30.2 39.3 165 204-369 60-251 (608)
400 KOG4507 Uncharacterized conser 59.2 49 0.0011 34.2 8.1 90 494-585 619-708 (886)
401 PF08311 Mad3_BUB1_I: Mad3/BUB 57.9 1E+02 0.0022 25.0 8.8 43 536-578 81-124 (126)
402 smart00028 TPR Tetratricopepti 57.5 24 0.00052 19.0 3.9 27 555-581 3-29 (34)
403 PRK10941 hypothetical protein; 57.5 1.7E+02 0.0037 27.6 11.1 75 451-526 185-259 (269)
404 PF04762 IKI3: IKI3 family; I 57.2 3.2E+02 0.007 31.3 15.0 28 310-337 814-843 (928)
405 PF15471 TMEM171: Transmembran 56.9 46 0.001 30.4 6.7 16 23-38 247-262 (319)
406 PF14689 SPOB_a: Sensor_kinase 55.9 29 0.00063 23.9 4.4 20 244-263 29-48 (62)
407 cd08819 CARD_MDA5_2 Caspase ac 55.0 86 0.0019 23.4 7.4 14 252-265 50-63 (88)
408 PF09986 DUF2225: Uncharacteri 54.9 1.5E+02 0.0033 26.7 10.1 52 535-586 142-198 (214)
409 KOG3807 Predicted membrane pro 54.9 2E+02 0.0044 27.6 13.1 58 384-441 281-340 (556)
410 PRK08691 DNA polymerase III su 54.8 1.6E+02 0.0034 32.1 11.4 94 136-235 184-277 (709)
411 PF09670 Cas_Cas02710: CRISPR- 54.7 2.3E+02 0.005 28.4 12.2 54 422-476 141-198 (379)
412 PF12862 Apc5: Anaphase-promot 54.5 77 0.0017 24.0 7.0 22 489-510 48-69 (94)
413 KOG0686 COP9 signalosome, subu 54.3 2.3E+02 0.0051 28.2 14.6 27 412-440 306-332 (466)
414 KOG4077 Cytochrome c oxidase, 54.3 69 0.0015 25.8 6.5 45 326-370 67-111 (149)
415 PRK14958 DNA polymerase III su 53.8 2.2E+02 0.0047 29.9 12.3 18 217-234 259-276 (509)
416 COG0790 FOG: TPR repeat, SEL1 53.8 2E+02 0.0044 27.3 21.7 86 214-305 52-145 (292)
417 KOG2675 Adenylate cyclase-asso 53.7 8.2 0.00018 37.7 1.8 6 28-33 263-268 (480)
418 KOG0545 Aryl-hydrocarbon recep 53.5 1.8E+02 0.004 26.7 12.1 59 526-585 238-296 (329)
419 KOG4642 Chaperone-dependent E3 52.3 1.9E+02 0.0041 26.5 10.4 120 457-580 20-144 (284)
420 PF09986 DUF2225: Uncharacteri 52.2 1.8E+02 0.0039 26.3 11.7 27 488-514 171-197 (214)
421 PRK14951 DNA polymerase III su 51.7 2.5E+02 0.0053 30.3 12.3 39 137-177 190-228 (618)
422 PF11846 DUF3366: Domain of un 51.4 70 0.0015 28.3 7.4 30 551-580 142-171 (193)
423 PRK10564 maltose regulon perip 51.2 28 0.0006 32.8 4.7 41 412-452 257-297 (303)
424 COG2178 Predicted RNA-binding 50.3 1.8E+02 0.0038 25.7 8.9 19 456-474 38-56 (204)
425 PF08424 NRDE-2: NRDE-2, neces 50.0 2.5E+02 0.0055 27.3 17.1 78 255-334 48-128 (321)
426 PF14853 Fis1_TPR_C: Fis1 C-te 49.6 75 0.0016 21.1 5.3 24 560-583 8-31 (53)
427 PRK10564 maltose regulon perip 49.4 43 0.00093 31.6 5.6 41 516-556 254-295 (303)
428 cd08819 CARD_MDA5_2 Caspase ac 49.3 1.1E+02 0.0024 22.9 7.4 15 321-335 49-63 (88)
429 PRK15180 Vi polysaccharide bio 49.1 3.1E+02 0.0066 28.0 31.5 120 180-303 301-421 (831)
430 KOG4507 Uncharacterized conser 48.9 1.1E+02 0.0025 31.8 8.7 87 355-441 619-705 (886)
431 KOG4567 GTPase-activating prot 48.8 1E+02 0.0022 29.2 7.8 71 223-298 263-343 (370)
432 KOG4279 Serine/threonine prote 48.7 3.9E+02 0.0085 29.1 17.0 90 290-379 180-279 (1226)
433 KOG1114 Tripeptidyl peptidase 48.4 4.4E+02 0.0096 29.6 13.4 14 396-409 1093-1106(1304)
434 cd00280 TRFH Telomeric Repeat 48.4 1.4E+02 0.003 26.0 7.9 22 210-231 118-139 (200)
435 PF04190 DUF410: Protein of un 48.1 2.4E+02 0.0052 26.5 18.1 65 232-296 43-113 (260)
436 KOG1498 26S proteasome regulat 48.0 2.9E+02 0.0063 27.4 14.9 189 251-476 25-241 (439)
437 smart00386 HAT HAT (Half-A-TPR 47.5 43 0.00093 18.6 3.8 27 393-419 2-28 (33)
438 PF13762 MNE1: Mitochondrial s 47.3 1.7E+02 0.0037 24.5 12.3 84 276-360 42-132 (145)
439 COG5071 RPN5 26S proteasome re 47.2 2.6E+02 0.0056 26.5 10.6 95 417-511 136-241 (439)
440 KOG1923 Rac1 GTPase effector F 46.7 67 0.0015 34.4 7.0 14 483-496 717-730 (830)
441 KOG0292 Vesicle coat complex C 46.0 4.6E+02 0.01 29.2 22.3 70 156-231 624-700 (1202)
442 PF10475 DUF2450: Protein of u 45.8 2.8E+02 0.006 26.6 12.8 170 151-333 45-222 (291)
443 COG2178 Predicted RNA-binding 45.7 2.1E+02 0.0046 25.2 10.6 109 464-582 20-150 (204)
444 PF14853 Fis1_TPR_C: Fis1 C-te 45.6 68 0.0015 21.3 4.6 20 491-510 10-29 (53)
445 PF15449 Retinal: Retinal prot 45.6 87 0.0019 35.1 7.8 16 8-23 1040-1055(1287)
446 PF12862 Apc5: Anaphase-promot 45.0 1.3E+02 0.0028 22.8 6.9 19 528-546 51-69 (94)
447 KOG0128 RNA-binding protein SA 44.6 4.7E+02 0.01 28.9 34.8 135 150-303 111-261 (881)
448 COG0735 Fur Fe2+/Zn2+ uptake r 44.6 1.4E+02 0.0031 24.9 7.7 60 402-461 10-69 (145)
449 COG0790 FOG: TPR repeat, SEL1 44.5 2.9E+02 0.0062 26.3 23.0 48 394-443 93-144 (292)
450 PF11817 Foie-gras_1: Foie gra 44.3 1.2E+02 0.0025 28.2 7.9 22 487-508 183-204 (247)
451 KOG3364 Membrane protein invol 44.2 1.3E+02 0.0027 24.8 6.7 65 447-511 32-100 (149)
452 KOG2422 Uncharacterized conser 43.9 4.1E+02 0.0089 28.0 16.6 159 213-372 248-448 (665)
453 PF11817 Foie-gras_1: Foie gra 43.6 2.5E+02 0.0055 26.0 10.0 58 523-580 183-245 (247)
454 COG2976 Uncharacterized protei 43.5 2.3E+02 0.0051 25.0 19.0 129 415-548 57-189 (207)
455 COG0735 Fur Fe2+/Zn2+ uptake r 43.2 1.1E+02 0.0023 25.7 6.7 62 295-357 8-69 (145)
456 KOG2005 26S proteasome regulat 43.0 4.5E+02 0.0098 28.2 27.4 262 353-618 407-701 (878)
457 PRK13342 recombination factor 42.9 3.8E+02 0.0082 27.3 18.7 31 252-282 244-274 (413)
458 KOG2034 Vacuolar sorting prote 41.6 5.4E+02 0.012 28.7 29.3 60 165-230 355-416 (911)
459 KOG2297 Predicted translation 41.1 3.3E+02 0.0071 26.0 24.1 69 390-467 267-341 (412)
460 PRK08691 DNA polymerase III su 40.9 4.2E+02 0.0091 29.0 11.9 46 463-510 180-226 (709)
461 KOG2034 Vacuolar sorting prote 40.5 5.6E+02 0.012 28.6 25.6 49 382-438 508-556 (911)
462 PF09868 DUF2095: Uncharacteri 40.2 80 0.0017 24.7 4.8 48 146-199 61-110 (128)
463 smart00777 Mad3_BUB1_I Mad3/BU 40.0 2E+02 0.0044 23.3 7.5 43 535-577 80-123 (125)
464 PRK14963 DNA polymerase III su 39.7 2.5E+02 0.0053 29.5 10.1 27 243-270 247-273 (504)
465 KOG0991 Replication factor C, 39.2 3.1E+02 0.0066 25.1 13.4 93 459-554 171-274 (333)
466 PF09477 Type_III_YscG: Bacter 39.1 1.9E+02 0.0041 22.7 9.4 32 515-548 68-99 (116)
467 PF09868 DUF2095: Uncharacteri 39.0 1.1E+02 0.0025 23.9 5.5 35 209-244 67-101 (128)
468 PRK14956 DNA polymerase III su 38.9 3.4E+02 0.0074 28.1 10.6 37 237-273 247-283 (484)
469 COG4259 Uncharacterized protei 38.4 1.8E+02 0.0039 22.3 6.9 38 366-403 60-97 (121)
470 PF09670 Cas_Cas02710: CRISPR- 38.4 4.2E+02 0.0092 26.5 12.2 51 180-231 143-197 (379)
471 KOG0376 Serine-threonine phosp 38.1 89 0.0019 31.6 6.2 66 390-457 50-115 (476)
472 COG5108 RPO41 Mitochondrial DN 37.9 1.9E+02 0.0041 30.8 8.5 74 417-493 33-114 (1117)
473 PRK14953 DNA polymerase III su 37.5 3.5E+02 0.0076 28.2 10.8 19 252-270 259-277 (486)
474 KOG1464 COP9 signalosome, subu 37.4 3.5E+02 0.0075 25.3 26.7 201 233-433 21-252 (440)
475 KOG0686 COP9 signalosome, subu 37.3 4.4E+02 0.0095 26.4 15.4 53 388-440 160-215 (466)
476 PRK14962 DNA polymerase III su 37.2 5E+02 0.011 27.0 15.6 23 215-237 255-277 (472)
477 PRK09857 putative transposase; 37.0 3.2E+02 0.0068 26.2 9.6 65 242-307 210-274 (292)
478 PF11663 Toxin_YhaV: Toxin wit 37.0 41 0.00089 27.4 3.0 20 323-342 110-129 (140)
479 PF02847 MA3: MA3 domain; Int 36.9 2E+02 0.0044 22.4 7.7 18 455-472 10-27 (113)
480 PRK06645 DNA polymerase III su 36.8 3.8E+02 0.0082 28.1 10.8 20 252-271 271-290 (507)
481 PF09454 Vps23_core: Vps23 cor 36.8 54 0.0012 22.9 3.3 49 201-250 6-54 (65)
482 KOG4814 Uncharacterized conser 36.5 4.7E+02 0.01 27.9 10.9 86 494-580 366-455 (872)
483 PF04910 Tcf25: Transcriptiona 36.4 4.4E+02 0.0096 26.2 19.5 123 236-371 38-167 (360)
484 KOG4567 GTPase-activating prot 36.2 1.9E+02 0.0042 27.5 7.5 42 294-335 264-305 (370)
485 COG2812 DnaX DNA polymerase II 36.0 4.6E+02 0.01 27.5 11.1 96 132-237 180-279 (515)
486 KOG2297 Predicted translation 36.0 4E+02 0.0086 25.5 19.9 22 412-433 321-342 (412)
487 PF10255 Paf67: RNA polymerase 35.8 3.6E+02 0.0078 27.2 10.0 133 377-509 38-191 (404)
488 PRK12323 DNA polymerase III su 35.7 6.2E+02 0.013 27.6 12.7 29 205-234 253-281 (700)
489 COG5159 RPN6 26S proteasome re 35.5 3.9E+02 0.0084 25.3 20.1 55 312-366 129-188 (421)
490 PRK13341 recombination factor 35.4 6.6E+02 0.014 27.9 17.3 178 323-517 169-367 (725)
491 PF11663 Toxin_YhaV: Toxin wit 35.0 48 0.001 27.0 3.1 33 563-599 105-137 (140)
492 PF12926 MOZART2: Mitotic-spin 34.9 1.9E+02 0.0042 21.5 8.0 45 539-583 29-73 (88)
493 PF11768 DUF3312: Protein of u 34.8 5.1E+02 0.011 27.1 10.9 123 244-373 414-537 (545)
494 PF11123 DNA_Packaging_2: DNA 34.8 1.3E+02 0.0029 21.4 4.8 50 393-442 12-75 (82)
495 KOG4077 Cytochrome c oxidase, 34.6 2.5E+02 0.0054 22.8 9.1 79 486-582 33-113 (149)
496 PRK12798 chemotaxis protein; R 34.5 5E+02 0.011 26.2 22.0 226 385-614 87-319 (421)
497 KOG4642 Chaperone-dependent E3 34.2 3.8E+02 0.0082 24.7 12.7 131 364-508 8-143 (284)
498 COG5108 RPO41 Mitochondrial DN 34.1 2.4E+02 0.0051 30.1 8.5 91 278-371 33-131 (1117)
499 PF02847 MA3: MA3 domain; Int 34.0 2.1E+02 0.0045 22.4 6.9 99 242-341 6-113 (113)
500 PLN00034 mitogen-activated pro 33.7 1.3E+02 0.0028 29.6 7.0 70 1-70 3-72 (353)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-65 Score=551.85 Aligned_cols=496 Identities=17% Similarity=0.199 Sum_probs=459.1
Q ss_pred HHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH---------------hcCCHHHHHH
Q 006744 125 VLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD---------------SQGRIAEMLE 189 (632)
Q Consensus 125 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~---------------~~g~~~~a~~ 189 (632)
.+...|+.+.|+++|+++....-+.++...++.++.+|.+.|.+++|..+++.|. +.|++++|.+
T Consensus 379 ~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 3445678899999999987654457788888889999999999999998887764 4578999999
Q ss_pred HHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006744 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269 (632)
Q Consensus 190 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 269 (632)
+|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv 538 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHH
Q 006744 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD--SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347 (632)
Q Consensus 270 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 347 (632)
.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..+|+
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence 99999999999999999999999999999986 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcC
Q 006744 348 PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG 426 (632)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 426 (632)
.+|.+|++.|++++|.++|++|.+.|+.|+..+++.++.+|++.|++++|.++|++|.+.+.. +..+|+.||.+|++.|
T Consensus 619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999987 9999999999999999
Q ss_pred ChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006744 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506 (632)
Q Consensus 427 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 506 (632)
++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++
T Consensus 699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCChHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006744 507 DCLGNVASGPTEFKYALTILHVCR----S-------------------GEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563 (632)
Q Consensus 507 ~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 563 (632)
+|.+. +..||..+|+.++..|.+ . +..++|+.+|++|.+.|+.||..||+.++.++
T Consensus 779 ~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl 857 (1060)
T PLN03218 779 QAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL 857 (1060)
T ss_pred HHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Confidence 99876 789999999999865432 1 22467999999999999999999999999888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhh-chhHHHHhhhhhhchhhhhh
Q 006744 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK-KTADLVLSGLKFFGLESKLK 623 (632)
Q Consensus 564 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~l~~~~~~~~~k 623 (632)
++.+..+.+.++++.|...+..+ +..+|+.++.++++. .++-.+++.+...|+-|.+-
T Consensus 858 ~~~~~~~~~~~m~~~m~~~~~~~--~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 858 QLPHDATLRNRLIENLGISADSQ--KQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred cccccHHHHHHHHHHhccCCCCc--chhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcc
Confidence 89999999999999988887765 788999999998764 47888888888888888763
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.5e-67 Score=574.36 Aligned_cols=484 Identities=17% Similarity=0.207 Sum_probs=453.5
Q ss_pred ChHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHh-----------------
Q 006744 118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS----------------- 180 (632)
Q Consensus 118 ~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~----------------- 180 (632)
+...+...+...++++.|+++|+.+.. .|+.||.++|+.++.+|++.++++.+.+++..+.+
T Consensus 154 ~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y 232 (857)
T PLN03077 154 SWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232 (857)
T ss_pred EHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHH
Confidence 345666677777888888888888754 58888888888888888888888888877766653
Q ss_pred --cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHH
Q 006744 181 --QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258 (632)
Q Consensus 181 --~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 258 (632)
.|++++|..+|++|.+ +|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.
T Consensus 233 ~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 233 VKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred hcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 4689999999999975 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006744 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338 (632)
Q Consensus 259 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 338 (632)
+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ||..+||++|.+|++.|++++|+++|++|.+.|
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999974 689999999999999999999999999999999
Q ss_pred CCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHH
Q 006744 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL 418 (632)
Q Consensus 339 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 418 (632)
+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+++.++.+|++.|++++|.++|++|.+. +..+||.+
T Consensus 385 ~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---d~vs~~~m 461 (857)
T PLN03077 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK---DVISWTSI 461 (857)
T ss_pred CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC---CeeeHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999876 77899999
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 006744 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498 (632)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 498 (632)
|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..++++||++|+++|++
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 9999999999999999999986 589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006744 499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578 (632)
Q Consensus 499 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 578 (632)
++|.++|+.+ .+|..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.
T Consensus 541 ~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 541 NYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 9999999885 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HCCCCCCCChhhHHHHHHHHhhhchhHHHHhhhhhhchhhhh
Q 006744 579 LR-ERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKL 622 (632)
Q Consensus 579 m~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~l~~~~~~~~~ 622 (632)
|. +.|+.| +..+|+.++..+++.++.+++.+.++.+.++|..
T Consensus 615 M~~~~gi~P--~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~ 657 (857)
T PLN03077 615 MEEKYSITP--NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDP 657 (857)
T ss_pred HHHHhCCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCH
Confidence 99 678877 7799999999999999999999999887766553
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.2e-64 Score=542.12 Aligned_cols=465 Identities=20% Similarity=0.321 Sum_probs=436.4
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcC--------------------CHHHHHHHHHHHHhCCCCcCHHhHHH
Q 006744 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQG--------------------RIAEMLEILEKMRRNLCKPDVFAYTA 208 (632)
Q Consensus 149 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g--------------------~~~~a~~~~~~m~~~~~~~~~~~~~~ 208 (632)
.++...|..++..|++.|++++|.++|+.|.+.| .+++|..+|+.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 5678889999999999999999999999998654 57899999999875 99999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC
Q 006744 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288 (632)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 288 (632)
+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHh--CCCCCCHhcHHHHHHHHHhcCChhHHHHHH
Q 006744 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ--DDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366 (632)
Q Consensus 289 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 366 (632)
+++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999986 679999999999999999999999999999
Q ss_pred HHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 006744 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445 (632)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 445 (632)
+.|.+.|+.++..+++.++.+|++.|++++|.++|++|.+.|.. +..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999877 99999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 006744 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525 (632)
Q Consensus 446 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 525 (632)
|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|... +..||..+|+.++
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999765 7899999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHC
Q 006744 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK----H-------------------GTLEEARKVFTNLRER 582 (632)
Q Consensus 526 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~ 582 (632)
.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +..++|..+|++|++.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999976542 1 1246799999999999
Q ss_pred CCCCCCChhhHHHHHHHHhhhchhHHHHhhhhhhchhh
Q 006744 583 KLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLES 620 (632)
Q Consensus 583 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~l~~~~~~~ 620 (632)
|+.| +..+|..++....+.+......+.++.++..+
T Consensus 842 Gi~P--d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 842 GTLP--TMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred CCCC--CHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 9988 78899999976666666666555555555444
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-63 Score=536.49 Aligned_cols=452 Identities=17% Similarity=0.193 Sum_probs=419.3
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHh-------------------c
Q 006744 121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS-------------------Q 181 (632)
Q Consensus 121 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~-------------------~ 181 (632)
.+...+...++++.|+++|+|+....++.||..+|+.++.+|++.++++.|.+++..|.+ .
T Consensus 92 ~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~ 171 (697)
T PLN03081 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171 (697)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence 344455666778888888888876666778888888888888888888888888877764 3
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHH
Q 006744 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261 (632)
Q Consensus 182 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 261 (632)
|++++|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++
T Consensus 172 g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 172 GMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred CCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 478888888988864 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006744 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP 341 (632)
Q Consensus 262 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 341 (632)
..+.+.|+.+|..+|+.||++|++.|++++|.++|++|.. +|..+||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999975 599999999999999999999999999999999999
Q ss_pred CHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 006744 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421 (632)
Q Consensus 342 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 421 (632)
|..||+.++.+|++.|++++|.+++..|.+.|+.++..+++.++.+|+++|++++|.++|++|.+. |..+||.||.+
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---d~~t~n~lI~~ 400 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK---NLISWNALIAG 400 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC---CeeeHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999765 78899999999
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHhcCCHHH
Q 006744 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE-MSQVPSVAAYNCLTKGLCKIGEIDA 500 (632)
Q Consensus 422 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~ 500 (632)
|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 999999999999999999999999999999999999999999999999999986 6999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580 (632)
Q Consensus 501 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 580 (632)
|.++++++ +..|+..+|++|+.+|+..|+++.|..+++++.+.+ +.+..+|..|+++|++.|++++|.+++++|.
T Consensus 481 A~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 481 AYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999875 678999999999999999999999999999998654 3457799999999999999999999999999
Q ss_pred HCCCCCCC
Q 006744 581 ERKLLTEA 588 (632)
Q Consensus 581 ~~~~~~~~ 588 (632)
++|+...+
T Consensus 556 ~~g~~k~~ 563 (697)
T PLN03081 556 RKGLSMHP 563 (697)
T ss_pred HcCCccCC
Confidence 99986433
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.3e-62 Score=537.09 Aligned_cols=465 Identities=17% Similarity=0.185 Sum_probs=337.7
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHH
Q 006744 129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTA 208 (632)
Q Consensus 129 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 208 (632)
.+..+.|.+++..+.+ .+..++...+|+|+.+|++.|+++.|.++ |++|.+ ||..+||.
T Consensus 99 ~~~~~~a~~~~~~~~~-~~~~~~~~~~n~li~~~~~~g~~~~A~~~----------------f~~m~~----~d~~~~n~ 157 (857)
T PLN03077 99 KRAVEEGSRVCSRALS-SHPSLGVRLGNAMLSMFVRFGELVHAWYV----------------FGKMPE----RDLFSWNV 157 (857)
T ss_pred CCCHHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHhCCChHHHHHH----------------HhcCCC----CCeeEHHH
Confidence 3445555555555543 34455566666666666666555555544 555532 67777777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC
Q 006744 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288 (632)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 288 (632)
+|.+|++.|++++|+++|++|...|+.||..||+.++.+|+..+++..+.+++..|.+.|+.||..+|+.||.+|++.|+
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHH
Q 006744 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368 (632)
Q Consensus 289 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 368 (632)
+++|.++|++|.. +|..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..
T Consensus 238 ~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 313 (857)
T PLN03077 238 VVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313 (857)
T ss_pred HHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence 7777777777753 577777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH
Q 006744 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448 (632)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 448 (632)
+.+.|+.++..+++.++.+|++.|++++|.++|++|... +..+||.+|.+|++.|++++|+++|++|.+.|+.||..
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~ 390 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK---DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce
Confidence 777777777777777777777777777777777777643 56677777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 006744 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528 (632)
Q Consensus 449 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 528 (632)
||+.++.+|++.|+++.|.++++.|.+.|+.++..+|+.||++|++.|++++|.++|++|.+ +|..+|+.+|.+|
T Consensus 391 t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~vs~~~mi~~~ 465 (857)
T PLN03077 391 TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-----KDVISWTSIIAGL 465 (857)
T ss_pred eHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CCeeeHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777776532 4455555555555
Q ss_pred HHcCCHHHHHHHHHHHHh----------------------------------CCC-------------------------
Q 006744 529 CRSGEAEKIIEVLNEMTQ----------------------------------EGC------------------------- 549 (632)
Q Consensus 529 ~~~g~~~~a~~~~~~m~~----------------------------------~g~------------------------- 549 (632)
++.|+.++|+++|++|.+ .|+
T Consensus 466 ~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~ 545 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN 545 (857)
T ss_pred HHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHH
Confidence 555555555555555543 221
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhhchhHHHHh---hhh-hhchhh
Q 006744 550 -----PPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLS---GLK-FFGLES 620 (632)
Q Consensus 550 -----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~---~l~-~~~~~~ 620 (632)
.+|..+|+.++.+|++.|+.++|.++|++|.+.|+.| +..+|..++.++.+.+..++.++ .|+ ..|+.|
T Consensus 546 ~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P--d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 546 QFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP--DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 3456678888888999999999999999999999987 78899999999998777666544 444 567777
Q ss_pred hhhhhccc
Q 006744 621 KLKAKGCK 628 (632)
Q Consensus 621 ~~k~~~~~ 628 (632)
..+.++|.
T Consensus 624 ~~~~y~~l 631 (857)
T PLN03077 624 NLKHYACV 631 (857)
T ss_pred chHHHHHH
Confidence 77777664
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.4e-60 Score=508.13 Aligned_cols=464 Identities=17% Similarity=0.191 Sum_probs=431.7
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhc--------------------CCHHHHHHHHHHHHhCCCCcCHHhHHH
Q 006744 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQ--------------------GRIAEMLEILEKMRRNLCKPDVFAYTA 208 (632)
Q Consensus 149 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~--------------------g~~~~a~~~~~~m~~~~~~~~~~~~~~ 208 (632)
..+..+|+.+|..|.+.|++++|.++|+.|... ++++.+..++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 456678999999999999999999999999754 367889999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC
Q 006744 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288 (632)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 288 (632)
|+.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999997 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHH
Q 006744 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368 (632)
Q Consensus 289 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 368 (632)
.+.+.+++..+.+.|+.+|..+|+.||++|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999996 45889999999999999999999999999
Q ss_pred HHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCH
Q 006744 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS 447 (632)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 447 (632)
|.+.|+.|+..++..++.+|++.|++++|.+++..|.+.+.. +..+||.||.+|++.|++++|.++|++|. .||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence 999999999999999999999999999999999999999977 99999999999999999999999999996 4799
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 006744 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527 (632)
Q Consensus 448 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 527 (632)
.+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+..+..|+..+|+.++.+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhhchhH
Q 006744 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607 (632)
Q Consensus 528 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 607 (632)
|++.|++++|.+++++| ++.|+..+|+.|+.+|...|+++.|.++++++.+.+...........+++...++.+++.
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 99999999999999876 578999999999999999999999999999998766543334445555555666667777
Q ss_pred HHHhhhhhhchhhhhhhhcccCC
Q 006744 608 LVLSGLKFFGLESKLKAKGCKLL 630 (632)
Q Consensus 608 ~v~~~l~~~~~~~~~k~~~~~~~ 630 (632)
.+++.|+..|+. |..||+.+
T Consensus 549 ~v~~~m~~~g~~---k~~g~s~i 568 (697)
T PLN03081 549 KVVETLKRKGLS---MHPACTWI 568 (697)
T ss_pred HHHHHHHHcCCc---cCCCeeEE
Confidence 788888888877 77888754
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.6e-27 Score=267.73 Aligned_cols=477 Identities=10% Similarity=0.010 Sum_probs=280.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH------------------hcC
Q 006744 121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD------------------SQG 182 (632)
Q Consensus 121 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~------------------~~g 182 (632)
.+..++...++++.|.++|+.+.... +.+...+..+...+...|++++|.+.++.+. ..|
T Consensus 368 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 445 (899)
T TIGR02917 368 LLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSG 445 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcC
Confidence 34566677888999999998876542 4456677788888888888888888777654 346
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHH
Q 006744 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262 (632)
Q Consensus 183 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 262 (632)
++++|..+++.+.... +.+..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+
T Consensus 446 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 446 QFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7788888888877653 3466677778888888888888888888777653 3345566667777777777777777777
Q ss_pred HHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006744 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342 (632)
Q Consensus 263 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 342 (632)
++.+.+.. +..++..+...+.+.|+.++|...++++...+.. +...+..++..|.+.|++++|..+++.+.+.. ..+
T Consensus 524 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 600 (899)
T TIGR02917 524 KVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDS 600 (899)
T ss_pred HHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCC
Confidence 77665433 5566666666666666666666666666554432 44455556666666666666666666655432 224
Q ss_pred HhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 006744 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422 (632)
Q Consensus 343 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 422 (632)
..+|..+..++...|++++|...++.+.+.... +...+..+..++.+.|++++|..+|+++.+..+.+..++..++..+
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 455555666666666666666666665554322 2334444555555556666666666555555444555555555555
Q ss_pred HhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC------------------------
Q 006744 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ------------------------ 478 (632)
Q Consensus 423 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------------------------ 478 (632)
...|++++|..+++.+...+ +.+...+..+...+...|++++|.+.|+.+.+.+.
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHH
Confidence 55555555555555554443 23334444444445555555555555555444321
Q ss_pred --------CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 006744 479 --------VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP 550 (632)
Q Consensus 479 --------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 550 (632)
..+...+..+...|...|++++|...|+++++.. ..+...++.+...+...|+ .+|+++++++.+.. +
T Consensus 759 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~ 834 (899)
T TIGR02917 759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-P 834 (899)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-C
Confidence 2234444444555555555555555555554332 1233444445555555555 44555555555442 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhhchhHHHHhhh
Q 006744 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613 (632)
Q Consensus 551 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~l 613 (632)
.+..++..+..++...|++++|.++++++.+.+.. +..++..+...+.+.++.+.+.+.+
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE---AAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34445555555666666666666666666665543 2334444444455545544444443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.1e-27 Score=266.09 Aligned_cols=468 Identities=13% Similarity=0.051 Sum_probs=397.5
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH------------------hcC
Q 006744 121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD------------------SQG 182 (632)
Q Consensus 121 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~------------------~~g 182 (632)
.+..++...++++.|+..+..+.... +.+...++.+...+.+.|++++|.++|+.+. ..|
T Consensus 334 ~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 411 (899)
T TIGR02917 334 LLASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQG 411 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Confidence 45566778899999999999886643 5577889999999999999999999998765 357
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHH
Q 006744 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262 (632)
Q Consensus 183 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 262 (632)
++++|.+.|+.+.+.... +...+..++..+.+.|++++|.++++.+.... +.+..++..+..++...|++++|.+.|+
T Consensus 412 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (899)
T TIGR02917 412 DPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFE 489 (899)
T ss_pred ChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 899999999999886533 34566778889999999999999999998764 5577899999999999999999999999
Q ss_pred HHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006744 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342 (632)
Q Consensus 263 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 342 (632)
++.+.... +...+..+...+...|++++|.+.|+++...+.. +..++..+...+.+.|++++|..+++++.+.+. .+
T Consensus 490 ~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~ 566 (899)
T TIGR02917 490 KALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QE 566 (899)
T ss_pred HHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cc
Confidence 99886543 6678888999999999999999999999987654 778899999999999999999999999987653 35
Q ss_pred HhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 006744 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422 (632)
Q Consensus 343 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 422 (632)
...+..+...+...|++++|..+++.+.+... .+...+..+..+|...|++++|...|+.+.+..+.+...+..+..++
T Consensus 567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 567 IEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY 645 (899)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 66788899999999999999999999987653 35677888899999999999999999999988777888999999999
Q ss_pred HhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 006744 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502 (632)
Q Consensus 423 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 502 (632)
.+.|++++|..+|+++.+.. +.+..++..+...+...|++++|.++++.+.+.. ..+...+..+...+...|++++|.
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998754 4567889999999999999999999999999865 356778888999999999999999
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 503 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
+.|++++... |+...+..++..+.+.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.++|+++.+.
T Consensus 724 ~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 724 QAYRKALKRA---PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHhhC---CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 9999988653 444666678888899999999999999988874 667888888999999999999999999999887
Q ss_pred CCCCCCChhhHHHHHHHHhhhch
Q 006744 583 KLLTEANTIVYDEILIEHMKKKT 605 (632)
Q Consensus 583 ~~~~~~~~~~~~~l~~~~~~~~~ 605 (632)
+.. +...+..+...+...++
T Consensus 800 ~p~---~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 800 APD---NAVVLNNLAWLYLELKD 819 (899)
T ss_pred CCC---CHHHHHHHHHHHHhcCc
Confidence 643 34445555555555444
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=5e-20 Score=208.66 Aligned_cols=392 Identities=12% Similarity=0.020 Sum_probs=248.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccc-HHhH------------
Q 006744 210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID-RAIY------------ 276 (632)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~------------ 276 (632)
...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+...... ...+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 345667889999999999888764 34677888888899999999999999998887543321 1111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhc
Q 006744 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356 (632)
Q Consensus 277 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 356 (632)
..+...+.+.|++++|+..|+++.+.... +...+..+...+...|++++|++.|++..+.... +...+..+...+. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-h
Confidence 12245677889999999999998887543 5667777888899999999999999888865322 2333444444332 2
Q ss_pred CChhHHHHHHHHHHHCCCC--------ccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 006744 357 GRMDNFFKLLAQMEKLKFS--------VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEV 428 (632)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 428 (632)
++.++|..+++.+...... .....+..+...+...|++++|++.|++..+..+.+...+..+...|.+.|++
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3444444444332111000 00111222333344455555555555555554444444455555555555555
Q ss_pred hhHHHHHHHHhhCCCCcCHHH--------------------------------------------HHHHHHHHHHcCCHH
Q 006744 429 KKALYLFGKMRGLNLEVNSLS--------------------------------------------FSIAIQCHVESGDIL 464 (632)
Q Consensus 429 ~~A~~~~~~m~~~~~~p~~~t--------------------------------------------~~~ll~~~~~~g~~~ 464 (632)
++|...++++.+.. +-+... +..+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 55555555544321 111111 112334556667777
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006744 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544 (632)
Q Consensus 465 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 544 (632)
+|..+++. ...+...+..+...+.+.|++++|++.|+++++..+. +...+..++..+...|++++|++.++..
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~--~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG--NADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77766651 2345566777888999999999999999999876433 4456777889999999999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC---ChhhHHHHHHHHhhhchhHHHHhhhh
Q 006744 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIVYDEILIEHMKKKTADLVLSGLK 614 (632)
Q Consensus 545 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~v~~~l~ 614 (632)
.+.. +.+..++..+..++...|++++|.++++++........+ +...+..+-..+...++.+.++..++
T Consensus 664 l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 664 PATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred hccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8763 455667788888999999999999999999886543222 22344333334444455555544443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=6e-20 Score=208.05 Aligned_cols=469 Identities=13% Similarity=0.051 Sum_probs=321.8
Q ss_pred hHHHHhhhhCCC---ChHHH---HHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHH----------------HHHHHHHH
Q 006744 106 QVVTELSKLRRV---TPDLV---AEVLKVENNPTLASKFFHWAGKQKGYKHNFASY----------------NALAYCLS 163 (632)
Q Consensus 106 ~~~~~l~~~~~~---~~~~~---~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~li~~~~ 163 (632)
.+...+.++..+ +|..+ ..++...|+.+.|.+.++.+.+.. +.+.... -.+...+.
T Consensus 46 ~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~ 123 (1157)
T PRK11447 46 LVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLA 123 (1157)
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHH
Confidence 344445444433 34433 344556789999999998886643 2222221 23345688
Q ss_pred hCCChhHHhHHHHHHHh-------------------cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHH
Q 006744 164 RNNLFRAADQVPELMDS-------------------QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLR 224 (632)
Q Consensus 164 ~~~~~~~a~~l~~~~~~-------------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 224 (632)
+.|++++|.+.|+.+.+ .|+.++|++.|+++.+..+ -+...+..+...+...|+.++|++
T Consensus 124 ~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~~g~~~eAl~ 202 (1157)
T PRK11447 124 TTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLFSSGRRDEGFA 202 (1157)
T ss_pred hCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccCCHHHHHH
Confidence 89999999998887653 2678889999999988743 367778888899999999999999
Q ss_pred HHHHHHhCCC------------------CcC-HHhHH----------------------------------HHHHHHHhc
Q 006744 225 VWEEMKKDLV------------------EAD-VMAYV----------------------------------TLIMGLCKG 251 (632)
Q Consensus 225 ~~~~m~~~~~------------------~p~-~~~~~----------------------------------~li~~~~~~ 251 (632)
.|+++.+... .++ ...+. .....+...
T Consensus 203 ~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~ 282 (1157)
T PRK11447 203 VLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDS 282 (1157)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHC
Confidence 9998754320 000 00000 113345667
Q ss_pred CChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHH------------HHHHHH
Q 006744 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA-DLGIYN------------SIIGGL 318 (632)
Q Consensus 252 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~------------~li~~~ 318 (632)
|++++|+..|++..+.... +..++..|..+|.+.|+.++|+..|++..+..... ....|. .+...+
T Consensus 283 g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 8889999999888886543 67788888888889999999999998888764332 111221 223456
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHH
Q 006744 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL 398 (632)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 398 (632)
.+.|++++|+..|+++.+... .+...+..+...+...|++++|++.|+++.+.... +......+...|. .++.++|.
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~ 438 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKAL 438 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHH
Confidence 788899999999988887643 24556667778888889999999999888876543 2334444555553 45678888
Q ss_pred HHHHHHHhCCCC---------ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 006744 399 DVFEELKGKGYS---------SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469 (632)
Q Consensus 399 ~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 469 (632)
..++.+...... ....+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 887765432111 12345667788899999999999999998853 33456677888899999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC-------------------------------------
Q 006744 470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV------------------------------------- 512 (632)
Q Consensus 470 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------------------------------- 512 (632)
++++.+.... +...+..+...+...|+.++|+..++.+....
T Consensus 518 l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999875422 33333333333344444444444443321100
Q ss_pred -CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 513 -ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 513 -~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
....+...+..+...+.+.|++++|++.|++..+.. +.+...+..++.+|...|++++|++.++.+.+...
T Consensus 597 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 597 RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 012233445567888889999999999999999874 66788999999999999999999999998877643
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=3.3e-20 Score=177.94 Aligned_cols=371 Identities=19% Similarity=0.127 Sum_probs=309.3
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccH-HhHHHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR-AIYGVLI 280 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li 280 (632)
-..+|..+.+.+-..|++++|+.+|+.+.+.. +-.+..|..+..++...|+.+.|.+.|.+..+.+ |+. ...+.+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 46789999999999999999999999999874 3467889999999999999999999999988864 333 3344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HhcHHHHHHHHHhcCCh
Q 006744 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD-FSTVNPLLVCCAEMGRM 359 (632)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~ 359 (632)
..+...|++++|...|.+.++.... =.+.|+.|...+...|+...|++.|++..+.+ |+ ...|..|...|...+.+
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcc
Confidence 6666789999999999998886442 45689999999999999999999999988653 33 35788899999999999
Q ss_pred hHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHh
Q 006744 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439 (632)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 439 (632)
+.|...+.+....... ....+.-+...|-..|.++.|+..|++..+..+.-...|+.|..++-..|++.+|...|.+..
T Consensus 269 d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred hHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999887765432 344555566668889999999999999999988878899999999999999999999999988
Q ss_pred hCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChH
Q 006744 440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS-VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE 518 (632)
Q Consensus 440 ~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 518 (632)
... +-.....+.|...+...|.++.|..+|....+- .|. ...++.|...|-.+|++++|+..|++++. +.|+-
T Consensus 348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~f 421 (966)
T KOG4626|consen 348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTF 421 (966)
T ss_pred HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchH
Confidence 752 334567889999999999999999999999884 344 56788899999999999999999999874 45653
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744 519 -FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586 (632)
Q Consensus 519 -~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 586 (632)
..|+.+...|-..|+.+.|+..+.+.+..+ +-=...++.|...|...|++.+|+.-++...+.....
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 568889999999999999999999998764 3335578899999999999999999999999886643
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=4.6e-21 Score=193.81 Aligned_cols=303 Identities=17% Similarity=0.115 Sum_probs=150.4
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccc---HHhHHHHHHHHHhcCC
Q 006744 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID---RAIYGVLIEGLVGEGK 288 (632)
Q Consensus 212 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~ 288 (632)
.+...|++++|++.|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445666666666666666553 23444566666666666666666666666655422111 1345555556666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHH
Q 006744 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368 (632)
Q Consensus 289 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 368 (632)
+++|..+|+++.+... .+..+++.++..+.+.|++++|.+.++.+.+.+..+.....
T Consensus 123 ~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------------------- 179 (389)
T PRK11788 123 LDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI---------------------- 179 (389)
T ss_pred HHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH----------------------
Confidence 6666666666554322 24445555555666666666666665555543322110000
Q ss_pred HHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH
Q 006744 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448 (632)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 448 (632)
...+..+...+.+.|++++|...|+++.+..+.+...+..+...|.+.|++++|.++|+++...+......
T Consensus 180 ---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 180 ---------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred ---------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 00111122223333444444444444443333344455555666666666666666666665432111123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 006744 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528 (632)
Q Consensus 449 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 528 (632)
++..+..+|...|+.++|...++++.+.. |+...+..++..+.+.|++++|.++++++++. .|+...++.++..+
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~ 325 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHh
Confidence 44555555555555555555555555432 33334455555555555555555555554432 34444444444444
Q ss_pred HH---cCCHHHHHHHHHHHHhCCCCCC
Q 006744 529 CR---SGEAEKIIEVLNEMTQEGCPPN 552 (632)
Q Consensus 529 ~~---~g~~~~a~~~~~~m~~~g~~p~ 552 (632)
+. .|+.++++.++++|.+.++.|+
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHHHhCC
Confidence 32 2345555555555554444333
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=3.3e-20 Score=187.59 Aligned_cols=308 Identities=15% Similarity=0.088 Sum_probs=236.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHcc
Q 006744 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD---LGIYNSIIGGLCRV 321 (632)
Q Consensus 245 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~ 321 (632)
...+...|++++|.+.|+++.+.+.. +..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 33456668888888888888876433 556777788888888888888888888776532211 24567777788888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHH
Q 006744 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVF 401 (632)
Q Consensus 322 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 401 (632)
|++++|..+|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence 88888888888877642 23456677777777777777777777777665432210000
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006744 402 EELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481 (632)
Q Consensus 402 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~ 481 (632)
....|..+...+.+.|++++|..+|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+....
T Consensus 179 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 179 ---------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred ---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 12246678888999999999999999998754 33456778888999999999999999999997643333
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006744 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561 (632)
Q Consensus 482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 561 (632)
..+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|+.+++++.+. .|+..++..++.
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 567888999999999999999999998865 456566688999999999999999999999886 588889998888
Q ss_pred HHHh---cCCHHHHHHHHHHHHHCCCCCCCCh
Q 006744 562 GMCK---HGTLEEARKVFTNLRERKLLTEANT 590 (632)
Q Consensus 562 ~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~ 590 (632)
.+.. .|+.+++..++++|.++++.+++..
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 8775 5689999999999999988887763
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=2e-19 Score=172.61 Aligned_cols=431 Identities=14% Similarity=0.134 Sum_probs=334.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHH-HHHHHHHhcC
Q 006744 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV-TLIMGLCKGG 252 (632)
Q Consensus 174 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g 252 (632)
+-+.+.++|++++|+.+++.+.+...+ .+..|..+..++...|+.+.|.+.|.+..+. .|+..... .+...+...|
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhc
Confidence 334556788889999999998886432 6789999999999999999999999998876 46655443 3445556679
Q ss_pred ChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 006744 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332 (632)
Q Consensus 253 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 332 (632)
++++|...|.+.++.... -...|+.|...+-..|+...|+..|++.+...+. =...|-.|...|...+.+++|+..|.
T Consensus 199 rl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred ccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHH
Confidence 999999999998886432 3567899999999999999999999999986433 35688889999999999999999999
Q ss_pred HHHhCCCCCC-HhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCC
Q 006744 333 VTVQDDLAPD-FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS 411 (632)
Q Consensus 333 ~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 411 (632)
+.... .|+ ...+..+...|...|+++.|...+++.++.... -...++-+..++...|++.+|++.|.+.....+..
T Consensus 277 rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h 353 (966)
T KOG4626|consen 277 RALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH 353 (966)
T ss_pred HHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc
Confidence 88754 444 456777778899999999999999999887654 35667888888999999999999999999998888
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHH
Q 006744 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN-SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS-VAAYNCLT 489 (632)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li 489 (632)
..+.+.|...|...|.+++|..+|....+. .|. ...++.|...|-+.|++++|...|++.++ +.|+ ...|+.+.
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmG 429 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMG 429 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcc
Confidence 889999999999999999999999998874 454 45688899999999999999999999987 5677 67899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc-
Q 006744 490 KGLCKIGEIDAAMMLVRDCLGNVASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN-EVICSAIISGMCKH- 566 (632)
Q Consensus 490 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~- 566 (632)
..|...|+.++|++.+.+.+.- .|. ...++.|...|-.+|+..+|+.-+++..+. +|| +..|..++.++--.
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~---nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQI---NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhc---CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHh
Confidence 9999999999999999998753 454 345777899999999999999999999986 455 33555554443222
Q ss_pred --CCH----HHHHHHHHHHHHCCCCCC-----CChhhHHHHHHHHhhhchhHHHHhhhhhhchhhh
Q 006744 567 --GTL----EEARKVFTNLRERKLLTE-----ANTIVYDEILIEHMKKKTADLVLSGLKFFGLESK 621 (632)
Q Consensus 567 --g~~----~~A~~~~~~m~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~v~~~l~~~~~~~~ 621 (632)
-|+ ++-.++.++-.++...|. .-.+..+.++...+..+-+...+.....+|.+|-
T Consensus 505 dw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~~k~py 570 (966)
T KOG4626|consen 505 DWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVLGKPPY 570 (966)
T ss_pred cccchHHHHHHHHHHHHHHHhhhcCCccCcccccccccchHHHHHHHHHHhhhhHHHHHhccCCCC
Confidence 222 223333333333333221 1122344555566666666666666666666543
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=1.9e-18 Score=183.95 Aligned_cols=399 Identities=11% Similarity=-0.010 Sum_probs=291.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHH
Q 006744 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257 (632)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 257 (632)
....|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++...|++++|
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA 213 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADA 213 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34678999999999998874 4677889999999999999999999999988764 34667888899999999999999
Q ss_pred HHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------------CCCCC-Hh
Q 006744 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS---------------------------GYRAD-LG 309 (632)
Q Consensus 258 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------------g~~~~-~~ 309 (632)
+.-|......+...+... ..++..+........+...++.-... ...+. ..
T Consensus 214 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 214 LLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 998877665432222221 22222211111111222221110000 00000 00
Q ss_pred hHHHHHHH---HHccCCHHHHHHHHHHHHhCC-CCC-CHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHH
Q 006744 310 IYNSIIGG---LCRVKQFDKAYKLFEVTVQDD-LAP-DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF 384 (632)
Q Consensus 310 ~~~~li~~---~~~~g~~~~A~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 384 (632)
.+..+... ....+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...+++..+.... ....+..+
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~l 371 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKR 371 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence 00001000 122467999999999998764 233 3456777778888999999999999999886543 34456677
Q ss_pred HHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHH
Q 006744 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464 (632)
Q Consensus 385 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 464 (632)
..++...|++++|...|+++.+.++.+..+|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|+++
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIA 450 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHH
Confidence 7788899999999999999999887789999999999999999999999999998864 345667778888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh----HH-HHHHHHHHHHHcCCHHHHHH
Q 006744 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT----EF-KYALTILHVCRSGEAEKIIE 539 (632)
Q Consensus 465 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~-~~~~l~~~~~~~g~~~~a~~ 539 (632)
+|...|+..++.. ..+...++.+...+...|++++|++.|++.+........ .. .++..+..+...|++++|++
T Consensus 451 eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~ 529 (615)
T TIGR00990 451 SSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAEN 529 (615)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999998753 335788899999999999999999999998865322111 11 12222223334699999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 540 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
++++..+.. +.+...+..+..++...|++++|.++|++..+..-
T Consensus 530 ~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 530 LCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 999998874 45566889999999999999999999999987643
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=2.1e-17 Score=175.86 Aligned_cols=380 Identities=11% Similarity=-0.066 Sum_probs=272.5
Q ss_pred HHHHHHHhCCChhHHhHHHHHHH-----------------hcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCCh
Q 006744 157 ALAYCLSRNNLFRAADQVPELMD-----------------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL 219 (632)
Q Consensus 157 ~li~~~~~~~~~~~a~~l~~~~~-----------------~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 219 (632)
.....+.+.|+++.|+..|+... ..|++++|++.++...+... .+..+|..+..+|...|++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCH
Confidence 34455555666666666655533 34788889988888887643 3677899999999999999
Q ss_pred hHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCc--cc-------------------------
Q 006744 220 DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL--ID------------------------- 272 (632)
Q Consensus 220 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~------------------------- 272 (632)
++|+.-|......+- .+......++..+... .+........+.... +.
T Consensus 211 ~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 211 ADALLDLTASCIIDG-FRNEQSAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HHHHHHHHHHHHhCC-CccHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999987765431 2222222222222111 111111111111000 00
Q ss_pred --H---HhHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-CCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006744 273 --R---AIYGVLIEG---LVGEGKVGKACDLLKDLVDSG-YRA-DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342 (632)
Q Consensus 273 --~---~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 342 (632)
. ..+..+... ....+++++|.+.|+...+.+ ..| ....|+.+...+...|++++|+..|++..+.... +
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-V 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-c
Confidence 0 000111100 122467899999999999864 222 4567888889999999999999999999875322 3
Q ss_pred HhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 006744 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422 (632)
Q Consensus 343 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 422 (632)
...|..+...+...|++++|...++++.+.... +..++..+..++...|++++|...|++..+..+.+...+..+..++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 557778888899999999999999999887543 5667788888899999999999999999999888888999999999
Q ss_pred HhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------hHHHHHHHHHhcC
Q 006744 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA------AYNCLTKGLCKIG 496 (632)
Q Consensus 423 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~li~~~~~~g 496 (632)
.+.|++++|+..|++..... +-+...++.+...+...|++++|...|++.++.....+.. .++..+..+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999998753 4456788888999999999999999999998764321111 1222233344579
Q ss_pred CHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547 (632)
Q Consensus 497 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 547 (632)
++++|.+++++++... ..+...+..+...+...|++++|+++|++..+.
T Consensus 523 ~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999987653 223446788999999999999999999998876
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.7e-17 Score=175.91 Aligned_cols=324 Identities=11% Similarity=0.007 Sum_probs=250.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHH
Q 006744 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259 (632)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 259 (632)
..|++++|..+++........ +...+..++.++...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred hcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 344555555555555554333 44555666677778999999999999998874 3456778888888999999999999
Q ss_pred HHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006744 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339 (632)
Q Consensus 260 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 339 (632)
.++++.+.... +...+..+...+...|+.++|...++.+...... +...+..+ ..+...|++++|...++.+.+...
T Consensus 132 ~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 132 LAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999886433 5778888899999999999999999988776544 33333333 347888999999999998877643
Q ss_pred CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHH----HHHHHHHHHhCCCCChhHH
Q 006744 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM----ALDVFEELKGKGYSSVPIY 415 (632)
Q Consensus 340 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~ 415 (632)
.++...+..+..++...|++++|...++++.+.... +......+..+|...|++++ |...|++..+..+.+..++
T Consensus 209 ~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~ 287 (656)
T PRK15174 209 LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIV 287 (656)
T ss_pred CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 344445555667888999999999999998877543 45666778888888999885 8999999998887788899
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHh
Q 006744 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV-AAYNCLTKGLCK 494 (632)
Q Consensus 416 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~ 494 (632)
..+...+...|++++|...+++..+.. +-+...+..+..++.+.|++++|...|+.+.+.. |+. ..+..+..++..
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQ 364 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHH
Confidence 999999999999999999999988753 3345566777888999999999999999998754 443 334445677889
Q ss_pred cCCHHHHHHHHHHHhhcC
Q 006744 495 IGEIDAAMMLVRDCLGNV 512 (632)
Q Consensus 495 ~g~~~~A~~~~~~~~~~~ 512 (632)
.|+.++|+..|+++++..
T Consensus 365 ~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 365 AGKTSEAESVFEHYIQAR 382 (656)
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999987653
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=8.3e-18 Score=178.21 Aligned_cols=333 Identities=9% Similarity=0.006 Sum_probs=272.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh
Q 006744 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285 (632)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 285 (632)
...++..+.+.|++++|+.+++...... +-+...+..++.++...|++++|.+.|+++.+.... +...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 4456677889999999999999998774 334556666777778899999999999999987554 67788899999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHH
Q 006744 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL 365 (632)
Q Consensus 286 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 365 (632)
.|+.++|...++++.+.... +...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHH
Confidence 99999999999999986443 67788889999999999999999999887654332 2233333 347889999999999
Q ss_pred HHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhh----HHHHHHHHhhC
Q 006744 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKK----ALYLFGKMRGL 441 (632)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~ 441 (632)
++.+.+............+..++...|++++|+..+++..+..+.+...+..+...|...|++++ |...|++..+.
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 99988775433444455566778899999999999999999887789999999999999999986 89999999875
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHH-
Q 006744 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK- 520 (632)
Q Consensus 442 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~- 520 (632)
. +.+...+..+...+...|++++|...++++.+... .+...+..+..+|.+.|++++|+..|++++... |+...
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~---P~~~~~ 354 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK---GVTSKW 354 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---ccchHH
Confidence 3 34566888899999999999999999999998642 246677788999999999999999999988653 44323
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006744 521 YALTILHVCRSGEAEKIIEVLNEMTQEG 548 (632)
Q Consensus 521 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g 548 (632)
+..+..++...|+.++|+..|++..+..
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3335677889999999999999998763
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=6e-16 Score=167.75 Aligned_cols=474 Identities=11% Similarity=-0.014 Sum_probs=279.8
Q ss_pred chHHHHhhhhCCCChH------HHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHH
Q 006744 105 PQVVTELSKLRRVTPD------LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM 178 (632)
Q Consensus 105 ~~~~~~l~~~~~~~~~------~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~ 178 (632)
..++..+.++....|. .+...+...|+++.|+..++.+... .|+...|..++..+ +++++|..+++++
T Consensus 61 ~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l---dP~n~~~~~~La~i---~~~~kA~~~ye~l 134 (987)
T PRK09782 61 ATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR---HPGDARLERSLAAI---PVEVKSVTTVEEL 134 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHHHHh---ccChhHHHHHHHH
Confidence 3677777776655443 3455666788999999999988764 45544444444333 8888998998887
Q ss_pred HhcC-----------------------CHHHHHHHHHHHHhCCCCcCHHhHHHH-HHHHHhcCChhHHHHHHHHHHhCCC
Q 006744 179 DSQG-----------------------RIAEMLEILEKMRRNLCKPDVFAYTAM-IRVLAAERNLDACLRVWEEMKKDLV 234 (632)
Q Consensus 179 ~~~g-----------------------~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~ 234 (632)
.... +.++|.+.++ .......|+..+.... ...|.+.|++++|++++.++.+.+
T Consensus 135 ~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~- 212 (987)
T PRK09782 135 LAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN- 212 (987)
T ss_pred HHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-
Confidence 7432 3455666666 4444444455555555 899999999999999999999986
Q ss_pred CcCHHhHHHHHHHHHh-cCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhH-
Q 006744 235 EADVMAYVTLIMGLCK-GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR-ADLGIY- 311 (632)
Q Consensus 235 ~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~- 311 (632)
..+......+..+|.. .++ +++..+++. .+.-+......+++.|.+.|+.++|.++++++...... |...+|
T Consensus 213 pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 213 TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 3456667777778887 366 777777553 23357889999999999999999999998886532111 111000
Q ss_pred -----------------------------HHHHHHHH-------------------------------------------
Q 006744 312 -----------------------------NSIIGGLC------------------------------------------- 319 (632)
Q Consensus 312 -----------------------------~~li~~~~------------------------------------------- 319 (632)
-.++..+.
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence 00112222
Q ss_pred --------------------ccCCHHHHHHHHHHHHhC-C-CCCCHhcHHHHHHHHHhc---------------------
Q 006744 320 --------------------RVKQFDKAYKLFEVTVQD-D-LAPDFSTVNPLLVCCAEM--------------------- 356 (632)
Q Consensus 320 --------------------~~g~~~~A~~~~~~m~~~-~-~~p~~~~~~~ll~~~~~~--------------------- 356 (632)
+.|+.++|.++|+..... + ..++......++..|.+.
T Consensus 368 ~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 447 (987)
T PRK09782 368 LYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ 447 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence 234444555555443321 0 111111222333333333
Q ss_pred ------------------------------------------CChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccH
Q 006744 357 ------------------------------------------GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI 394 (632)
Q Consensus 357 ------------------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (632)
++.++|...+.+...... +......+...+...|++
T Consensus 448 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~P--d~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQP--DAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCC--chHHHHHHHHHHHHCCCH
Confidence 233334443333333221 111122222333456666
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744 395 MMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474 (632)
Q Consensus 395 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 474 (632)
++|...|+++...... ...+..+..++.+.|++++|...+++..+.. +.+...+..+...+...|++++|...+++.+
T Consensus 526 eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 526 ATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred HHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 6666666665444222 2334555566666677777777776666543 2222222233333444577777777777776
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 006744 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554 (632)
Q Consensus 475 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 554 (632)
+.. |+...+..+..++.+.|++++|+..+++.+...+. +...++.+...+...|++++|+.++++..+.. +-+..
T Consensus 604 ~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd--~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~ 678 (987)
T PRK09782 604 NIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN--NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPA 678 (987)
T ss_pred HhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 643 45666667777777777777777777776654322 23345556666777777777777777777653 45566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHH
Q 006744 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH 600 (632)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~ 600 (632)
.+..+..++...|++++|...+++..+...........+..+....
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 6777777777777777777777777766544323333444444333
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.9e-16 Score=171.69 Aligned_cols=385 Identities=12% Similarity=0.030 Sum_probs=234.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 281 (632)
+...+..+...+...|++++|.++|++..+.. +.+...+..++.++...|++++|+..++++.+.... +.. +..+..
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~ 124 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAY 124 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHH
Confidence 44456666666666677777776666665542 233455556666666666777777766666665322 344 666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH------hcHHHHHHHHH-
Q 006744 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF------STVNPLLVCCA- 354 (632)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~- 354 (632)
++...|+.++|+..++++.+..+. +...+..+..++...|..++|++.++.... .|+. .....++....
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~ 200 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFM 200 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcc
Confidence 666667777777777666665443 444445556666666666666666654432 1211 01111122111
Q ss_pred ----hcCCh---hHHHHHHHHHHHC-CCCccc--cHHHHH---HHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHHHHH
Q 006744 355 ----EMGRM---DNFFKLLAQMEKL-KFSVAA--DLEKFF---EFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420 (632)
Q Consensus 355 ----~~~~~---~~a~~~~~~~~~~-~~~~~~--~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~ 420 (632)
..+++ ++|+..++.+.+. ...|.. ...... +.++...|++++|+..|+.+.+.+.. ....-..+..
T Consensus 201 ~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~ 280 (765)
T PRK10049 201 PTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVAS 280 (765)
T ss_pred cccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHH
Confidence 11122 5566666666643 111111 111111 12234557788888888887776532 1112222466
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCC---HH
Q 006744 421 ALLEIGEVKKALYLFGKMRGLNLEV---NSLSFSIAIQCHVESGDILEACECHNKIIEMSQ-----------VPS---VA 483 (632)
Q Consensus 421 ~~~~~g~~~~A~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~p~---~~ 483 (632)
+|...|++++|+.+|+++.+..-.. .......+..++...|++++|.+.++.+.+... .|+ ..
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 7888888888888888876542110 123455566677888888888888888776421 122 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006744 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563 (632)
Q Consensus 484 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 563 (632)
.+..+...+...|++++|++++++++...+.. ...+..+...+...|++++|++.+++..+.. +.+...+..++..+
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n--~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~a 437 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGN--QGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHH
Confidence 44566777888899999999999887664333 4456667888888899999999999888864 45566777777788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHH
Q 006744 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL 597 (632)
Q Consensus 564 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~ 597 (632)
...|++++|..+++++++..... +....+....
T Consensus 438 l~~~~~~~A~~~~~~ll~~~Pd~-~~~~~~~~~~ 470 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAREPQD-PGVQRLARAR 470 (765)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 88899999999999998876542 3333444443
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.9e-16 Score=171.67 Aligned_cols=401 Identities=10% Similarity=0.011 Sum_probs=291.3
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 281 (632)
+..-..-.+......|+.++|+++|.+..... +.+...+..+...+...|++++|.++|++..+.... +...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 44445556677788999999999999998632 456667999999999999999999999999887433 5677888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH
Q 006744 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361 (632)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 361 (632)
++...|+.++|+..++++.+.... +.. +..+..++...|+.++|+..++++.+.... +...+..+..++...+..+.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 999999999999999999987543 555 888899999999999999999999986433 44455667778888899999
Q ss_pred HHHHHHHHHHCCCCc----cccHHHHHHHHh-----hhcccH---HHHHHHHHHHHhCCCC---ChhHH----HHHHHHH
Q 006744 362 FFKLLAQMEKLKFSV----AADLEKFFEFLV-----GKEERI---MMALDVFEELKGKGYS---SVPIY----NILMGAL 422 (632)
Q Consensus 362 a~~~~~~~~~~~~~~----~~~~~~~l~~~~-----~~~g~~---~~a~~~~~~~~~~~~~---~~~~~----~~li~~~ 422 (632)
|.+.++.+... ... ........+..+ ...+++ ++|++.++.+.+.... ....+ ...+.++
T Consensus 169 Al~~l~~~~~~-p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 169 ALGAIDDANLT-PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 99888765541 100 000111122222 222344 7788888888754221 11111 1123455
Q ss_pred HhcCChhhHHHHHHHHhhCCCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCCH
Q 006744 423 LEIGEVKKALYLFGKMRGLNLE-VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP---SVAAYNCLTKGLCKIGEI 498 (632)
Q Consensus 423 ~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~ 498 (632)
...|++++|+..|+++.+.+.. |+.. ...+..+|...|++++|...|+++.+..... .......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 6779999999999999987532 3332 2224678999999999999999988753221 134566677788999999
Q ss_pred HHHHHHHHHHhhcCC----------CCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006744 499 DAAMMLVRDCLGNVA----------SGPTE---FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565 (632)
Q Consensus 499 ~~A~~~~~~~~~~~~----------~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 565 (632)
++|.++++++....+ ..|+. ..+..+...+...|+.++|+++++++... .+.+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 999999999886532 12332 23455777888999999999999999987 37778899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhhchhHHHHhhh
Q 006744 566 HGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613 (632)
Q Consensus 566 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~l 613 (632)
.|+.++|++.+++..+... +.....+...+ .+...++.+.+...+
T Consensus 406 ~g~~~~A~~~l~~al~l~P--d~~~l~~~~a~-~al~~~~~~~A~~~~ 450 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEP--RNINLEVEQAW-TALDLQEWRQMDVLT 450 (765)
T ss_pred cCCHHHHHHHHHHHHhhCC--CChHHHHHHHH-HHHHhCCHHHHHHHH
Confidence 9999999999999998764 33333333333 444445555544444
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1.1e-15 Score=140.86 Aligned_cols=257 Identities=11% Similarity=0.118 Sum_probs=205.3
Q ss_pred CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006744 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314 (632)
Q Consensus 235 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 314 (632)
+-+..+|.++|.++|+--..+.|.+++++......+.+..+||.+|.+-.-..+ .+++.+|....++||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 446789999999999999999999999999988888899999999976543322 7889999999999999999999
Q ss_pred HHHHHccCCHHH----HHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH-HHHHHHHHHHC----CC----CccccHH
Q 006744 315 IGGLCRVKQFDK----AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN-FFKLLAQMEKL----KF----SVAADLE 381 (632)
Q Consensus 315 i~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~----~~~~~~~ 381 (632)
+++..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ +..++.++... .+ +.+...+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998875 45778899999999999999999999988887644 45555554432 22 2234456
Q ss_pred HHHHHHhhhcccHHHHHHHHHHHHhCCC----C----ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHH
Q 006744 382 KFFEFLVGKEERIMMALDVFEELKGKGY----S----SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453 (632)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 453 (632)
...+..|....+.+.|.++-.-+....- . ...-|..+....|+....+.-+..|+.|.-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 6677777888899989888776654321 1 2334677888889999999999999999988888999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 006744 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495 (632)
Q Consensus 454 l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 495 (632)
+++..-.|.++-.-++|..++..|...+......++..+++.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 999999999999999999999888665555544455555543
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=7.8e-16 Score=156.12 Aligned_cols=457 Identities=12% Similarity=0.075 Sum_probs=344.7
Q ss_pred ChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH---------------------hcCCHHHHHH
Q 006744 131 NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD---------------------SQGRIAEMLE 189 (632)
Q Consensus 131 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~---------------------~~g~~~~a~~ 189 (632)
....++..+..+.... ..|+...+.|.+.|.-.|++..++.+...+. .+|++++|..
T Consensus 251 s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 4567777777776655 4566788889999999999999998876554 3689999999
Q ss_pred HHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC----ChhHHHHHHHHHH
Q 006744 190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG----RVVRGHELFREMK 265 (632)
Q Consensus 190 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~~~~m~ 265 (632)
.|.+..+....--+..+--|.+.+.+.|+++.+...|+.+.+.. +-+..+.-+|...|+..+ ..+.|..++.+..
T Consensus 329 yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 329 YYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99888775433224556678899999999999999999998874 345667777777777664 5677888888777
Q ss_pred HcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC---C
Q 006744 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV----DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD---D 338 (632)
Q Consensus 266 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~ 338 (632)
+..+. |...|-.+...|-...-+ .++.+|.... ..+..+.....|.+...+...|++++|...|+..... .
T Consensus 408 ~~~~~-d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 408 EQTPV-DSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred hcccc-cHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 76533 778888887777655443 3366665544 4555578889999999999999999999999987754 2
Q ss_pred CCCCHh------cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCCh
Q 006744 339 LAPDFS------TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSV 412 (632)
Q Consensus 339 ~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 412 (632)
..+|.. +-..+....-..++++.|.+.|..+.+..+. ....+.-+..+....+...+|...++.....+..++
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np 564 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNP 564 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc
Confidence 233331 2233555666778999999999999886432 222222233333456889999999999999888899
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCcCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCC
Q 006744 413 PIYNILMGALLEIGEVKKALYLFGKMRGLN-LEVNSLSFSIAIQCHVE------------SGDILEACECHNKIIEMSQV 479 (632)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~ 479 (632)
.++..+...+.+...+..|.+-|......- ..+|..+...|.+.|.+ .+..++|+++|.++++.. +
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-p 643 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-P 643 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-c
Confidence 999999999999999999998777665542 34677777777776653 345788999999999865 3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHH
Q 006744 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE-GCPPNEVICSA 558 (632)
Q Consensus 480 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ 558 (632)
-|...-|.+.-+++..|++++|..+|.++.+... -...+|-.+...|...|++..|+++|+...+. +-..+..+...
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS--DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHh--hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 4777778888999999999999999999886533 23345667999999999999999999986654 44567889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHH
Q 006744 559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598 (632)
Q Consensus 559 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~ 598 (632)
|..++.+.|.+.+|.+.+.......+. ...+.|+..+.
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~p~--~~~v~FN~a~v 759 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLAPS--NTSVKFNLALV 759 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCc--cchHHhHHHHH
Confidence 999999999999999999888776543 45565555443
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=6.8e-15 Score=156.32 Aligned_cols=394 Identities=11% Similarity=0.067 Sum_probs=225.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCH--HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHH
Q 006744 180 SQGRIAEMLEILEKMRRNLCKPDV--FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257 (632)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 257 (632)
++|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++..... .........+...+...|++++|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred hCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 3466666666677766643 332 233 77777778888888888888877211 12233333335577777888888
Q ss_pred HHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337 (632)
Q Consensus 258 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (632)
.++|+++.+.... +...+..++..+...++.++|++.++++... .|+...+-.++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 8888888887555 5667777778888888888888888888776 344445544444444456665688888888876
Q ss_pred CCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccc------cHHHHHHHHh---h--hccc---HHHHHHHHHH
Q 006744 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA------DLEKFFEFLV---G--KEER---IMMALDVFEE 403 (632)
Q Consensus 338 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~---~--~~g~---~~~a~~~~~~ 403 (632)
+. -+...+..++.+..+.|-...|.++..+-... +.+.. ......+..- . ...+ .+.|..-++.
T Consensus 199 ~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 199 AP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred CC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 42 24555566667777777766666555432110 00000 0000000000 0 1111 2333333444
Q ss_pred HHh---CCCCC----hhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006744 404 LKG---KGYSS----VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476 (632)
Q Consensus 404 ~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 476 (632)
+.. ..+.. ..+.--.+-++...|++.++++.|+.|...+.+.-..+-..+..+|...+..++|..+|+.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 333 11111 11222344555666666677777776666664434445566666666677777777777666543
Q ss_pred CC-----CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------------CCChHHH-HHHHHHHHHHcCCHHHHH
Q 006744 477 SQ-----VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA------------SGPTEFK-YALTILHVCRSGEAEKII 538 (632)
Q Consensus 477 ~~-----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------~~p~~~~-~~~l~~~~~~~g~~~~a~ 538 (632)
.. .++......|..+|...+++++|..+++++.+..+ ..||-.. +..++..+...|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 21 12233345566666666777777777666654222 1122222 223445556666777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 539 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
+.++++.... |-|..+...+.+.+...|...+|.+.++.....+
T Consensus 437 ~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~ 480 (822)
T PRK14574 437 KKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA 480 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Confidence 7777666553 5566666666666666777777777666655553
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=1e-14 Score=154.92 Aligned_cols=433 Identities=12% Similarity=0.019 Sum_probs=310.3
Q ss_pred HHHhcCCChhHHHHHHHHhhhcCCCCCCH--HHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 006744 124 EVLKVENNPTLASKFFHWAGKQKGYKHNF--ASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201 (632)
Q Consensus 124 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 201 (632)
.+..+.|++..|+..|+.+.+. .|+. ..+ .++..++..|+.++|+.+++.... . -..
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~----------------p-~n~ 100 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS----------------S-MNI 100 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc----------------C-CCC
Confidence 3445678999999999998764 3543 233 788888888777776666554431 0 012
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 281 (632)
.......+...+...|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++++.+. .|+...+..++.
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~lay 177 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSY 177 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHH
Confidence 23333344567888899999999999999875 345677778888899999999999999999876 345555655555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhc------HHHHHHHH--
Q 006744 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST------VNPLLVCC-- 353 (632)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~------~~~ll~~~-- 353 (632)
.+...++..+|++.++++.+..+. +...+..++.++.+.|-...|+++..+-... +.+...- ....++.-
T Consensus 178 L~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~ 255 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVL 255 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhccc
Confidence 555566776799999999998654 6778888899999999999998877653211 1111100 01111100
Q ss_pred ---HhcCC---hhHHHHHHHHHHHC-CCCccc--cHHH---HHHHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHHHHH
Q 006744 354 ---AEMGR---MDNFFKLLAQMEKL-KFSVAA--DLEK---FFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG 420 (632)
Q Consensus 354 ---~~~~~---~~~a~~~~~~~~~~-~~~~~~--~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~ 420 (632)
...++ .+.|+.-++.+... +..|.. .... -.+.++...|++.++++.|+.+...+.+ ...+-..+.+
T Consensus 256 ~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 256 PTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 01122 23344455554442 111211 1122 2344567889999999999999988865 7778889999
Q ss_pred HHHhcCChhhHHHHHHHHhhCC-----CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CC--C-
Q 006744 421 ALLEIGEVKKALYLFGKMRGLN-----LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ-----------VP--S- 481 (632)
Q Consensus 421 ~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~p--~- 481 (632)
+|...++.++|+.+|+++.... ..++......|.-++...+++++|..+++.+.+... .| |
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 9999999999999999986643 123444467889999999999999999999997322 12 2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006744 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561 (632)
Q Consensus 482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 561 (632)
...+..++..+...|++.+|++.+++++...+. |......+...+...|.+.+|++.++.+... -+-+..+....+.
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~--n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~ 492 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA--NQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHH
Confidence 333455677889999999999999999876443 4455666888889999999999999877766 3566778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC
Q 006744 562 GMCKHGTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 562 ~~~~~g~~~~A~~~~~~m~~~~~~ 585 (632)
++...|++++|.++.+.+.+....
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCC
Confidence 999999999999999999888654
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=9.9e-14 Score=150.69 Aligned_cols=441 Identities=11% Similarity=0.006 Sum_probs=308.9
Q ss_pred HhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHH--------HHhCCChhHHhHHHH-----------------HHHh
Q 006744 126 LKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC--------LSRNNLFRAADQVPE-----------------LMDS 180 (632)
Q Consensus 126 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~~~~~~a~~l~~-----------------~~~~ 180 (632)
+...+++..|..+|+.+.... +-+...+..+... |.+.+...++++ .. ....
T Consensus 118 La~i~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 118 LAAIPVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred HHHhccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHH
Confidence 344477888999999987754 3445555555554 555544444444 22 2224
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHH
Q 006744 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA-ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259 (632)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 259 (632)
.|++++|++++.++.+.++. +......|..+|.. .++ +++..+++.. ++-|...+..+...+.+.|+.++|.+
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~ 268 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQH 268 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 57899999999999998754 56667777788887 477 8888886642 24688899999999999999999999
Q ss_pred HHHHHHHcCCc-ccHHh--H----------------------------HHHHHHH-------------------------
Q 006744 260 LFREMKENGIL-IDRAI--Y----------------------------GVLIEGL------------------------- 283 (632)
Q Consensus 260 ~~~~m~~~~~~-p~~~~--~----------------------------~~li~~~------------------------- 283 (632)
+++++...-.. |...+ | ..++..+
T Consensus 269 ~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 348 (987)
T PRK09782 269 YLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEER 348 (987)
T ss_pred HHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHH
Confidence 99887532111 10000 0 0001111
Q ss_pred --------------------------------------HhcCCHHHHHHHHHHHHHC-C-C-------------------
Q 006744 284 --------------------------------------VGEGKVGKACDLLKDLVDS-G-Y------------------- 304 (632)
Q Consensus 284 --------------------------------------~~~g~~~~a~~~~~~m~~~-g-~------------------- 304 (632)
.+.|+.++|.++|+..... + -
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 349 YAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred HhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 2334445555554443321 0 0
Q ss_pred -------------------------------------------CC--CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006744 305 -------------------------------------------RA--DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339 (632)
Q Consensus 305 -------------------------------------------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 339 (632)
.. +...|..+..++.. ++.++|+..+.+....
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-- 505 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-- 505 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--
Confidence 01 22333444444444 5666777766666544
Q ss_pred CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006744 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419 (632)
Q Consensus 340 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 419 (632)
.|+......+...+...|++++|...++++.... +.......+..++.+.|+.++|...++...+..+.....+..+.
T Consensus 506 ~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La 583 (987)
T PRK09782 506 QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLH 583 (987)
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 3554443344455568999999999999986653 23333455667788899999999999999988765555555555
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 006744 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499 (632)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 499 (632)
..+...|++++|...+++..+. .|+...+..+..++.+.|+.++|...+++..+.. +.+...++.+..++...|+++
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 5556679999999999999874 5678889999999999999999999999999865 235778888999999999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579 (632)
Q Consensus 500 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 579 (632)
+|+..+++.++..+ -+...+..+..++...|++++|+..+++..+.. +-+..+.........+..+++.|.+-+++.
T Consensus 661 eAi~~l~~AL~l~P--~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 661 QSREMLERAHKGLP--DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999987643 234567779999999999999999999999874 444467777777788888888888888777
Q ss_pred HHCCCCC
Q 006744 580 RERKLLT 586 (632)
Q Consensus 580 ~~~~~~~ 586 (632)
...++..
T Consensus 738 ~~~~~~~ 744 (987)
T PRK09782 738 WTFSFDS 744 (987)
T ss_pred hhcCccc
Confidence 6665543
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2e-14 Score=146.12 Aligned_cols=476 Identities=9% Similarity=0.049 Sum_probs=282.6
Q ss_pred CCChhHHHHHHHHhhh-cCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcC---------------------CHHH
Q 006744 129 ENNPTLASKFFHWAGK-QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG---------------------RIAE 186 (632)
Q Consensus 129 ~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g---------------------~~~~ 186 (632)
.+++..|+.+|..+.+ .+...+|+.. .+..++.+.|+.+.|+..|.+..+.. .+..
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHH
Confidence 3578888988888654 3456667543 23466778888888877777665432 4455
Q ss_pred HHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--cCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 006744 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE--ADVMAYVTLIMGLCKGGRVVRGHELFREM 264 (632)
Q Consensus 187 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m 264 (632)
+..++...-..+. -|.++.+.|.+.|.-.|+++.++.+...+...... .-...|-.+.++|-..|++++|...|.+.
T Consensus 255 ~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 255 GVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 5666665554432 36667788888888888888888888877764311 12344667788888888888888888777
Q ss_pred HHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC----CHHHHHHHHHHHHhC---
Q 006744 265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK----QFDKAYKLFEVTVQD--- 337 (632)
Q Consensus 265 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~--- 337 (632)
.+..-.--...+-.|.+.|.+.|+++.+...|+.+...... +..+...|...|...+ ..+.|..++.+..+.
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~ 412 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV 412 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc
Confidence 66533212334556677788888888888888777765332 3444445555554443 234444444433332
Q ss_pred ----------------------------------CCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCccc--
Q 006744 338 ----------------------------------DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL---KFSVAA-- 378 (632)
Q Consensus 338 ----------------------------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-- 378 (632)
+..+.....|.+...+...|+++.|...|+..... ...++.
T Consensus 413 d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred cHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 22233344444444444555555555555544333 011111
Q ss_pred ----cHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHH
Q 006744 379 ----DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454 (632)
Q Consensus 379 ----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 454 (632)
.+-..+..++-..++.+.|.+.|..+.+..+.-+..|--++...-..+...+|...+....... ..+...++.+.
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G 571 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLG 571 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHH
Confidence 1122223333344455555555555555443333333333322223345555666665555432 23333333344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHh------------cCCHHHHHHHHHHHhhcCCCCChHHHH
Q 006744 455 QCHVESGDILEACECHNKIIEMS-QVPSVAAYNCLTKGLCK------------IGEIDAAMMLVRDCLGNVASGPTEFKY 521 (632)
Q Consensus 455 ~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~~~~p~~~~~ 521 (632)
..+.....+..|.+-|..+.+.- ..+|..+..+|.+.|.. .+..++|+++|.++++.. ..|.+.-
T Consensus 572 ~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAA 649 (1018)
T KOG2002|consen 572 NLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAA 649 (1018)
T ss_pred HHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhc
Confidence 45555555556666555544432 22466666666665442 245678888888887642 3455666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHh
Q 006744 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601 (632)
Q Consensus 522 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~ 601 (632)
|.+...++..|++.+|..+|.+..+.. ..+..+|..+..+|..+|++..|+++|+...++-. +.++......|-.++.
T Consensus 650 NGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~-~~~~~~vl~~Lara~y 727 (1018)
T KOG2002|consen 650 NGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY-KKNRSEVLHYLARAWY 727 (1018)
T ss_pred cchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHH
Confidence 777777888899999999999888874 34566788888999999999999999988877655 3445556666666666
Q ss_pred hhchhHHHHhhh
Q 006744 602 KKKTADLVLSGL 613 (632)
Q Consensus 602 ~~~~~~~v~~~l 613 (632)
+.+........+
T Consensus 728 ~~~~~~eak~~l 739 (1018)
T KOG2002|consen 728 EAGKLQEAKEAL 739 (1018)
T ss_pred HhhhHHHHHHHH
Confidence 666655554444
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2.2e-14 Score=132.46 Aligned_cols=308 Identities=15% Similarity=0.117 Sum_probs=222.9
Q ss_pred CChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH--hCCChh-HHhHHHHHHHhcC--------CHHHHHHHHHHHHhCC
Q 006744 130 NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLS--RNNLFR-AADQVPELMDSQG--------RIAEMLEILEKMRRNL 198 (632)
Q Consensus 130 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~-~a~~l~~~~~~~g--------~~~~a~~~~~~m~~~~ 198 (632)
+....+.-+|+.+. +.|.+-+...--.|+..-+ ...... .-++.|-.|.+.| +-+-|.-+|+..
T Consensus 129 ~EvKDs~ilY~~m~-~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~---- 203 (625)
T KOG4422|consen 129 REVKDSCILYERMR-SENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETL---- 203 (625)
T ss_pred cccchhHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhc----
Confidence 45667777887764 4666666666666654433 222222 2233344444322 112223333333
Q ss_pred CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHH
Q 006744 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278 (632)
Q Consensus 199 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 278 (632)
+.+..+|..||.++|+.-..+.|.++|++-.....+.+..+||.+|.+-.-.. ..+++.+|......||..|||+
T Consensus 204 -PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 204 -PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred -CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHH
Confidence 24677899999999999999999999999988877899999999998755433 3889999999999999999999
Q ss_pred HHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHH-HHHHHHHHHhC----CCCC----CHhc
Q 006744 279 LIEGLVGEGKVGK----ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK-AYKLFEVTVQD----DLAP----DFST 345 (632)
Q Consensus 279 li~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----~~~p----~~~~ 345 (632)
++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++... .++| |..-
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998765 56688899999999999999999999999888754 55555555432 2333 3344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC----CCc---cccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHH
Q 006744 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLK----FSV---AADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNI 417 (632)
Q Consensus 346 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~ 417 (632)
|...+..|.+..+.+.|.++..-+.... +.+ ....+..+..+.|+....+.-...|+.|.-.-.. +..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 6677888999999999998877664432 111 1223455666678888899999999988765543 7777888
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCcCH
Q 006744 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNS 447 (632)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 447 (632)
++++.-..|.++-.-++|..+...|..-+.
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 889999999999999999999887744333
No 29
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.2e-12 Score=119.96 Aligned_cols=440 Identities=13% Similarity=0.097 Sum_probs=332.8
Q ss_pred CChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHh------------------cCCHHHHHHHH
Q 006744 130 NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS------------------QGRIAEMLEIL 191 (632)
Q Consensus 130 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~------------------~g~~~~a~~~~ 191 (632)
++...|..+|+.+.... ..+...|-..+.+=.+++....|+.++++... .|++..|..+|
T Consensus 87 ~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 36778999999887643 56777888889999999999999999987652 58999999999
Q ss_pred HHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc-CC-
Q 006744 192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN-GI- 269 (632)
Q Consensus 192 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~- 269 (632)
++..+ ..|+..+|++.|+.=.+-+.++.|..+|+...-. .|++.+|--....=.+.|++..|..+|+...+. |-
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 99887 5799999999999999999999999999998754 699999998888889999999999999988763 11
Q ss_pred cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCCHHHHHHH--------HHHHHhCCCC
Q 006744 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA-DLGIYNSIIGGLCRVKQFDKAYKL--------FEVTVQDDLA 340 (632)
Q Consensus 270 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~~~~ 340 (632)
.-+...|.+....=.++..++.|.-+|+-.++.-+.- ....|..+...--+-|+....... |+.++..+ .
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p 319 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-P 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-C
Confidence 1133455555555566778899999998888763321 134455555444455665444433 34444443 3
Q ss_pred CCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcccc------HHHHHHHHh---hhcccHHHHHHHHHHHHhCCCCC
Q 006744 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD------LEKFFEFLV---GKEERIMMALDVFEELKGKGYSS 411 (632)
Q Consensus 341 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~ 411 (632)
-|..+|-..++.-...|+.+...++|++.+..-.+.... +|-.+-.++ ....+++.+.++|+...+.-+..
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk 399 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK 399 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc
Confidence 477788888888888899999999999998764432221 121221121 35788999999999888743333
Q ss_pred hhH----HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 006744 412 VPI----YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487 (632)
Q Consensus 412 ~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 487 (632)
..+ |-....--.++.++..|.+++.... |..|-..+|...|..-.+.++++.+..+|++.++.+. -+..+|..
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~k 476 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSK 476 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHH
Confidence 333 4444555567889999999998776 5789999999999999999999999999999999763 36788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---
Q 006744 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC--- 564 (632)
Q Consensus 488 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~--- 564 (632)
....-...|+.|.|..+|.-++......-....|.+.|.--...|.++.|..+++++++. .+...+|.+...--.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~ 554 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASAS 554 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhcccc
Confidence 888888999999999999998877555555566777777777889999999999999987 344556666554332
Q ss_pred --hcC-----------CHHHHHHHHHHHHH
Q 006744 565 --KHG-----------TLEEARKVFTNLRE 581 (632)
Q Consensus 565 --~~g-----------~~~~A~~~~~~m~~ 581 (632)
+.| ++..|+++|++...
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 344 57789999988743
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=1e-14 Score=135.46 Aligned_cols=437 Identities=14% Similarity=0.098 Sum_probs=272.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH-----------------------hcCCHHHHH
Q 006744 132 PTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD-----------------------SQGRIAEML 188 (632)
Q Consensus 132 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~-----------------------~~g~~~~a~ 188 (632)
...|+..|+-+.+..-|+.....--.+.+.+.+.+.|.+|++.+.... +.|.+++|+
T Consensus 217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dai 296 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAI 296 (840)
T ss_pred HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhH
Confidence 456677777665544333322222334566677777777777766443 346788888
Q ss_pred HHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC------------HHhHHHHH-----HHHHhc
Q 006744 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD------------VMAYVTLI-----MGLCKG 251 (632)
Q Consensus 189 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------------~~~~~~li-----~~~~~~ 251 (632)
.-|+...+. .|+..+--.|+-.+..-|+.++..+.|.+|...-..+| ....+..| .-.-+.
T Consensus 297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~ 374 (840)
T KOG2003|consen 297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE 374 (840)
T ss_pred hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence 888876654 36655544444455567777888888888765432222 22222222 111111
Q ss_pred C--ChhHHHHHHHHHHHcCCcccHH-------------hHH--------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006744 252 G--RVVRGHELFREMKENGILIDRA-------------IYG--------VLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308 (632)
Q Consensus 252 g--~~~~a~~~~~~m~~~~~~p~~~-------------~~~--------~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 308 (632)
+ +.++++-.-.+++.--+.|+-. .|. .-..-|.+.|+++.|+++++-+.+..-+.-.
T Consensus 375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s 454 (840)
T KOG2003|consen 375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS 454 (840)
T ss_pred hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence 1 1222222222222222222211 010 1122456778888888887777665333222
Q ss_pred hhHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHH
Q 006744 309 GIYNSIIGGLCR--VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386 (632)
Q Consensus 309 ~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 386 (632)
..-+.|-..+.- -.++..|.++-+..+..+.. +......-.+.....|++++|.+.+++....+-.....+++. ..
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-gl 532 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GL 532 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cc
Confidence 233333222222 33566666666655432211 111111112233456889999999998887654433333332 22
Q ss_pred HhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 006744 387 LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466 (632)
Q Consensus 387 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 466 (632)
.+...|++++|++.|-++...-..+..+.-.+...|-...+...|++++.+.... ++-|...++.+...|-+.|+...|
T Consensus 533 t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhh
Confidence 3567899999999998876554447778888888898899999999998777653 566778888899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 006744 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC-RSGEAEKIIEVLNEMT 545 (632)
Q Consensus 467 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 545 (632)
.+++-.-... +.-+..+...|...|....-+++|+.+|++.- -+.|+...|..++..|. +.|++++|.++++...
T Consensus 612 fq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 612 FQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred hhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 8887665443 34578888888888888888999999998864 46799999998888776 5699999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579 (632)
Q Consensus 546 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 579 (632)
.+ ++.|......|++.+...|.. ++.++-+++
T Consensus 688 rk-fpedldclkflvri~~dlgl~-d~key~~kl 719 (840)
T KOG2003|consen 688 RK-FPEDLDCLKFLVRIAGDLGLK-DAKEYADKL 719 (840)
T ss_pred Hh-CccchHHHHHHHHHhccccch-hHHHHHHHH
Confidence 76 788899999999988887753 344444333
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=1.7e-11 Score=119.71 Aligned_cols=440 Identities=12% Similarity=0.067 Sum_probs=310.4
Q ss_pred HHHHhCCChhHHhHHHHHHH------------------hcCCHHHHHHHHHH----HHhCCCCcCHHhHHHHHHHHHhcC
Q 006744 160 YCLSRNNLFRAADQVPELMD------------------SQGRIAEMLEILEK----MRRNLCKPDVFAYTAMIRVLAAER 217 (632)
Q Consensus 160 ~~~~~~~~~~~a~~l~~~~~------------------~~g~~~~a~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g 217 (632)
-+|++..-++.|..+++... .+|..+....++++ +...|+..+...|-.=...|-..|
T Consensus 414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 34455555666666665544 24555555555544 345577777777777777777777
Q ss_pred ChhHHHHHHHHHHhCCCCc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHH
Q 006744 218 NLDACLRVWEEMKKDLVEA--DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295 (632)
Q Consensus 218 ~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 295 (632)
..-.+..+....+..|++- -..||+.-.+.|.+.+.++-|..+|....+.-. -+...|...+..=-..|..++...+
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHH
Confidence 7777777777776666543 235677777788888888888888888777533 3667777777777778888888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006744 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375 (632)
Q Consensus 296 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 375 (632)
|++....-.+ ....|-.....+-..|+...|..++....+.... +...|...+..-....+++.|..+|.+.... .
T Consensus 573 lqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--s 648 (913)
T KOG0495|consen 573 LQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--S 648 (913)
T ss_pred HHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--C
Confidence 8888876443 5666777777788889999999999888876544 6677878888888888999999999887663 4
Q ss_pred ccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH-HHHHHH
Q 006744 376 VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL-SFSIAI 454 (632)
Q Consensus 376 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll 454 (632)
++..++.-.+..-.-.++.++|.+++++..+..+.-...|-.+.+.+-+.++++.|...|..-.+. -|+.. .|..+.
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLa 726 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLA 726 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHH
Confidence 566666666666667788999999998888877666777888888888899999888888766553 45544 445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCH
Q 006744 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534 (632)
Q Consensus 455 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 534 (632)
..--+.|.+-.|..++++..-.+. -+...|-..|.+-.+.|..+.|..++.++++.++ .+...|..-|....+.++-
T Consensus 727 kleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp--~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECP--SSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--ccchhHHHHHHhccCcccc
Confidence 555677888999999998877653 3677888889999999999999998888887642 3344565555555555554
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhhchhHHHHhhhh
Q 006744 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK 614 (632)
Q Consensus 535 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~l~ 614 (632)
...++.+++ +.-|..+.-.+...+....+++.|++.|.+..+.+......-..|-.....++...+...|++...
T Consensus 804 Tks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 804 TKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred hHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 444444332 456778888888888888999999999999988876532222223333334444445555555443
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=3.9e-12 Score=128.88 Aligned_cols=344 Identities=12% Similarity=0.045 Sum_probs=245.1
Q ss_pred HHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHH------------------HHHHHhcCCHH
Q 006744 124 EVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV------------------PELMDSQGRIA 185 (632)
Q Consensus 124 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l------------------~~~~~~~g~~~ 185 (632)
.++-..|+.+.|.+++..++++. +.+...|..|...|-..|+.+++... .+...++|.++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 34445688889999998888765 56777888888888888888877553 34445778999
Q ss_pred HHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHH----hHHHHHHHHHhcCChhHHHHHH
Q 006744 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM----AYVTLIMGLCKGGRVVRGHELF 261 (632)
Q Consensus 186 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~~~ 261 (632)
+|.-+|.+.++..+. +...+---+..|-+.|+...|.+.|.++....-+.|.. .--.+++.+...++.+.|.+.+
T Consensus 225 qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999887543 44444455677889999999999999998764222222 2223456677777778899888
Q ss_pred HHHHHc-CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------------------------CCCHhhHHH
Q 006744 262 REMKEN-GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY---------------------------RADLGIYNS 313 (632)
Q Consensus 262 ~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---------------------------~~~~~~~~~ 313 (632)
+..... +-..+...++.++..|.+...++.|......+..... .++..++ -
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-R 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-h
Confidence 887662 2233566788899999999999999988877766211 1222221 1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCC--CCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhc
Q 006744 314 IIGGLCRVKQFDKAYKLFEVTVQDD--LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE 391 (632)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 391 (632)
++-++.+.+..+....+.....+.. +.-+...|.-+.+++...|++..|..++..+......-+..++-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2233344444444444444455554 33355678888899999999999999999998876665677888888899999
Q ss_pred ccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhh--------CCCCcCHHHHHHHHHHHHHcCCH
Q 006744 392 ERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG--------LNLEVNSLSFSIAIQCHVESGDI 463 (632)
Q Consensus 392 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~t~~~ll~~~~~~g~~ 463 (632)
|..++|.+.|+.+....+.+..+--.|...+-+.|+.++|.+.++.+.. .+..|+..........+...|+.
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 9999999999999988888877888888889999999999999988642 22344555555555566677776
Q ss_pred HHHHHHHH
Q 006744 464 LEACECHN 471 (632)
Q Consensus 464 ~~a~~~~~ 471 (632)
++-..+-.
T Consensus 543 E~fi~t~~ 550 (895)
T KOG2076|consen 543 EEFINTAS 550 (895)
T ss_pred HHHHHHHH
Confidence 66444433
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=1.3e-11 Score=115.09 Aligned_cols=424 Identities=13% Similarity=0.075 Sum_probs=279.9
Q ss_pred CHHHHHHHHHHHHhCCChhHHhHHHHHHHhc--------------------CCHHHHHHHHHHHHhCCCCcCH----HhH
Q 006744 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQ--------------------GRIAEMLEILEKMRRNLCKPDV----FAY 206 (632)
Q Consensus 151 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~--------------------g~~~~a~~~~~~m~~~~~~~~~----~~~ 206 (632)
+..+...|..-|.......+|...++.+.+. ..+..|+..++-....-+..+. ...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 3444455667777778888888888877642 2678888888776654322222 334
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcc------------cHH
Q 006744 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI------------DRA 274 (632)
Q Consensus 207 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p------------~~~ 274 (632)
+.+.-.+.+.|.++.|+..|+...+. .|+..+--.|+-++..-|+-++..+.|.+|+..-..+ +..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 45555678899999999999987766 5787665555656666789999999999997643222 222
Q ss_pred hHHHHH-----HHHHhcC--CHHHHHHHHHHHHHCCCCCCHh-------------hHH--------HHHHHHHccCCHHH
Q 006744 275 IYGVLI-----EGLVGEG--KVGKACDLLKDLVDSGYRADLG-------------IYN--------SIIGGLCRVKQFDK 326 (632)
Q Consensus 275 ~~~~li-----~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~-------------~~~--------~li~~~~~~g~~~~ 326 (632)
..+.-| .-.-+.+ +.++++-.--+++.--+.|+-. .+. .-...|.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 222222 1111111 1122222112222111122210 010 11235788999999
Q ss_pred HHHHHHHHHhCCCCCCHhcHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHH
Q 006744 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAE--MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL 404 (632)
Q Consensus 327 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 404 (632)
|+++++-..+.+-+.-...-+.|-..+.- ..++..|.++-+.....+-- +......-.......|++++|.+.|++.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 99999888766443333333333322222 34677777777766543211 1111111222234579999999999999
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHh
Q 006744 405 KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484 (632)
Q Consensus 405 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 484 (632)
...+...+...-.+.-.+-..|++++|+..|-++... +.-+...+..+...|....+...|.+++.+.... +..|+.+
T Consensus 517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 9886554444445556677899999999999887653 3456677788888999999999999999877652 4456899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006744 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564 (632)
Q Consensus 485 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 564 (632)
...|.+.|-+.|+-..|.+.+-+-..-.+.. ..+..-|..-|....-+++++.+|++..- +.|+..-|..++..|.
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~n--ie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCN--IETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcc--hHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHH
Confidence 9999999999999999998876544443333 33444477778888889999999998765 5899999998887665
Q ss_pred -hcCCHHHHHHHHHHHHHCC
Q 006744 565 -KHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 565 -~~g~~~~A~~~~~~m~~~~ 583 (632)
+.|++..|.++++...++=
T Consensus 671 rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HhcccHHHHHHHHHHHHHhC
Confidence 6799999999999998764
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=2.8e-12 Score=128.39 Aligned_cols=284 Identities=9% Similarity=0.021 Sum_probs=179.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHH--HHHHHHHhcCChhHHH
Q 006744 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV--TLIMGLCKGGRVVRGH 258 (632)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~ 258 (632)
.|++++|.+.+....+..-.| ...|.....+..+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 467777776666655432111 222333334446788888888888888765 45543322 3356777788888888
Q ss_pred HHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHccCCHHHHHHHH
Q 006744 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL-------GIYNSIIGGLCRVKQFDKAYKLF 331 (632)
Q Consensus 259 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~ 331 (632)
+.++++.+.... +...+..+...|.+.|++++|.+++..+.+.+...+. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888877644 6777788888888888888888888888876554222 12333344444444555666666
Q ss_pred HHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCC
Q 006744 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS 411 (632)
Q Consensus 332 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 411 (632)
+.+.+. ...+......+...+...|+.++|.+++++..+.. ++.... .+......++.+++.+..+...+..+.+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 655332 23355566677777778888888888887776632 222221 1222234466777777777776666666
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475 (632)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 475 (632)
...+..+...+.+.|++++|.+.|+.+.+ ..|+..++..+...+.+.|+.++|.+++++...
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666777777777777777777777665 356666666666666666666666666665543
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=3.1e-10 Score=111.05 Aligned_cols=436 Identities=12% Similarity=0.060 Sum_probs=343.2
Q ss_pred hhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH----hc-------------------CCHHHHH
Q 006744 132 PTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD----SQ-------------------GRIAEML 188 (632)
Q Consensus 132 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~----~~-------------------g~~~~a~ 188 (632)
++.|..++..+.. .++-+...|-+-...--.+|..+...+++++-. .. |.+-...
T Consensus 422 YenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ 499 (913)
T KOG0495|consen 422 YENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ 499 (913)
T ss_pred HHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence 3445555555433 356777777777777777888888777766433 22 3334444
Q ss_pred HHHHHHHhCCCCc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744 189 EILEKMRRNLCKP--DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266 (632)
Q Consensus 189 ~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 266 (632)
.+.......|+.- -..||+.-...|.+.+.++-|..+|...++.- +-+...|...+..--..|..++-..+|++...
T Consensus 500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~ 578 (913)
T KOG0495|consen 500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVE 578 (913)
T ss_pred HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555544432 23567777788888899999999998887653 45667788777777778999999999999998
Q ss_pred cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcH
Q 006744 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346 (632)
Q Consensus 267 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 346 (632)
.-.+ ....|......+...|++..|..++....+.... +...|-.-+.....+.+++.|..+|.+... ..|+...|
T Consensus 579 ~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~ 654 (913)
T KOG0495|consen 579 QCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVW 654 (913)
T ss_pred hCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhh
Confidence 7443 5666777778888899999999999999998765 888999999999999999999999998876 45666777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 006744 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIG 426 (632)
Q Consensus 347 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 426 (632)
.--+..---.+..++|.+++++.++. ++.-..++..+..++-+.++++.|.+.|..-.+..+..+..|-.|...=-+.|
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 66666666789999999999988876 33355677888888999999999999999888887778889999999999999
Q ss_pred ChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006744 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506 (632)
Q Consensus 427 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 506 (632)
.+-.|..++++..-.+ +-|...|...|+.-.+.|+.+.|..++.+.++. ...+...|..-|....+.++-..+...++
T Consensus 734 ~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk 811 (913)
T KOG0495|consen 734 QLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK 811 (913)
T ss_pred chhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH
Confidence 9999999999998765 667888999999999999999999999999874 34566778888888888887666666665
Q ss_pred HHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 507 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
++ ..|....-.+...+-...++++|.+.|.+.++.+ +.+..+|..+..-+...|.-+.-.++++.......
T Consensus 812 kc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 812 KC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred hc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 53 2344455556677778889999999999999985 66778999999999999999999999998877654
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=2.2e-11 Score=123.53 Aligned_cols=362 Identities=15% Similarity=0.136 Sum_probs=243.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHH
Q 006744 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259 (632)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 259 (632)
.+|+.++|.+++.++++... .+...|.+|...|-..|+.+++...+-..-..+ +-|...|..+.....+.|+++.|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 56999999999999988754 477889999999999999999988776554443 4567888889998999999999999
Q ss_pred HHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH----HHHHHHccCCHHHHHHHHHHHH
Q 006744 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS----IIGGLCRVKQFDKAYKLFEVTV 335 (632)
Q Consensus 260 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~ 335 (632)
.|.+.++.... +...+---+..|-+.|+...|.+.|.++.......|..-+.. ++..+...++-+.|.+.++...
T Consensus 229 cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999987554 555666667888999999999999999988755333333333 3556677777788888888776
Q ss_pred hC-CCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCC---------------------------CCccccHHHHHHHH
Q 006744 336 QD-DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK---------------------------FSVAADLEKFFEFL 387 (632)
Q Consensus 336 ~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~ 387 (632)
.. +-..+...++.++..+.+...++.+...+..+.... .+++..+. .++.+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 53 233455678888888999999999888887765511 11111220 11222
Q ss_pred hhhcccHHHHHHHHHHHHhCC--CC-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHH
Q 006744 388 VGKEERIMMALDVFEELKGKG--YS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL 464 (632)
Q Consensus 388 ~~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 464 (632)
+......+....+...+.+.+ +. +...|..+..+|...|++.+|+.+|..+.....--+...|..+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 223333333333333333333 33 566777777888888888888888887776654455667777777777888888
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC-------CCCChHHHHHHHHHHHHHcCCHHHH
Q 006744 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV-------ASGPTEFKYALTILHVCRSGEAEKI 537 (632)
Q Consensus 465 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a 537 (632)
+|.+.|++++... +-+...-..|...+.+.|+.++|.+.+..+.... ...|+...--.....+...|+.++=
T Consensus 467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 8888888777643 1234455566667777888888877777654211 1123332222334445566666665
Q ss_pred HHHHHHHHh
Q 006744 538 IEVLNEMTQ 546 (632)
Q Consensus 538 ~~~~~~m~~ 546 (632)
+.+...|+.
T Consensus 546 i~t~~~Lv~ 554 (895)
T KOG2076|consen 546 INTASTLVD 554 (895)
T ss_pred HHHHHHHHH
Confidence 555555554
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=5.8e-12 Score=126.84 Aligned_cols=286 Identities=12% Similarity=0.043 Sum_probs=127.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH--HhHHHHHHHHHhcCChhHH
Q 006744 181 QGRIAEMLEILEKMRRNLCKPD-VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV--MAYVTLIMGLCKGGRVVRG 257 (632)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a 257 (632)
.|+++.|.+.+.+..+.. |+ ...+-....++.+.|+++.|.+.|++..+.. |+. .........+...|+++.|
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 355555555555544432 22 2222333344455556666666655554432 222 1222234455555556666
Q ss_pred HHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHH---HHccCCHHHHHHHHHH
Q 006744 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN-SIIGG---LCRVKQFDKAYKLFEV 333 (632)
Q Consensus 258 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~---~~~~g~~~~A~~~~~~ 333 (632)
.+.++.+.+..+. +..++..+...+...|++++|.+.++.+.+.++. +...+. .-..+ +...+..++..+.+..
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6665555555433 4445555555555556666555555555555432 222111 01111 1111112222222222
Q ss_pred HHhCCC---CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC
Q 006744 334 TVQDDL---APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS 410 (632)
Q Consensus 334 m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 410 (632)
+.+... ..+...+..+...+...|+.++|.+++++..+ ..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~-----------------------------------~~pd 295 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK-----------------------------------KLGD 295 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh-----------------------------------hCCC
Confidence 222211 11334444444555555555555555555544 3333
Q ss_pred ChhH--HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 006744 411 SVPI--YNILMGALLEIGEVKKALYLFGKMRGLNLEVNS---LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485 (632)
Q Consensus 411 ~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 485 (632)
+... ...........++.+.+.+.++...+. .|+. ....++...|.+.|++++|.+.|+........|+...+
T Consensus 296 ~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~ 373 (409)
T TIGR00540 296 DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL 373 (409)
T ss_pred cccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence 2211 011111112234445555555554442 2222 23334555555566666666666533332234555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 486 NCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 486 ~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
..+...+.+.|+.++|.++|++.+
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566666666666666666666543
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4.8e-11 Score=112.08 Aligned_cols=368 Identities=12% Similarity=0.017 Sum_probs=259.9
Q ss_pred CCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhH-
Q 006744 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY- 276 (632)
Q Consensus 198 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~- 276 (632)
+...|...+-.....+.+.|....|++.|......- +-.-..|..|...+ .+.+.+.. .... ...|....
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~~----l~~~-l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILSI----LVVG-LPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHHH----HHhc-CcccchHHH
Confidence 444565555555556678899999999998877541 22334444443332 23322222 2221 22121111
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHhcHHHHHHHH
Q 006744 277 -GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL--APDFSTVNPLLVCC 353 (632)
Q Consensus 277 -~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~ 353 (632)
--+..++-.....+++..-.+.....|+.-+...-+....+.....++++|+.+|+++.+.+. .-|..+|+.++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 123456666678888888888888888875555555556667788999999999999998742 23677888776543
Q ss_pred HhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHH
Q 006744 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALY 433 (632)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 433 (632)
.....+ .++.+-.-.--..-+.+...+.+.|+-.++.++|...|++..+.++....+|+.|..-|....+...|.+
T Consensus 310 ~~~skL----s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 310 NDKSKL----SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhhHHH----HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHH
Confidence 222222 2222211111112344556667778888999999999999999998888999999999999999999999
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006744 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513 (632)
Q Consensus 434 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 513 (632)
-++..++.+ +-|...|-.+.++|.-.+...-|+-+|++..+.. +.|...|.+|.++|.+.++.++|++.|+..+.-..
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 999999864 6688899999999999999999999999998864 35799999999999999999999999999886532
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE----GCPPNEV--ICSAIISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 514 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
.+...|..|...|-+.++.++|...+++-++. |...+.. ...-|..-+.+.+++++|..+......-
T Consensus 464 --te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 464 --TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred --cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 34566777999999999999999998876652 4332212 2233555667889999998877666544
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=5.7e-12 Score=126.88 Aligned_cols=300 Identities=10% Similarity=-0.027 Sum_probs=185.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 006744 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328 (632)
Q Consensus 249 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 328 (632)
...|+++.|.+.+.+..+.... ....+-.....+...|+.+.|.+.+++..+....+.....-.....+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3458888888888776665322 233344445677778888888888888766533322233334467777788888888
Q ss_pred HHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCC
Q 006744 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408 (632)
Q Consensus 329 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 408 (632)
..++.+.+.... +...+..+...+...|+++.+.+.+..+.+.+..............
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a--------------------- 231 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKA--------------------- 231 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH---------------------
Confidence 888888776532 4456667777788888888888888887777543222211111111
Q ss_pred CCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC---CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 006744 409 YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN---LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY 485 (632)
Q Consensus 409 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 485 (632)
+..+ ...+..+++.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+.........+
T Consensus 232 ------~~~~----l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~ 301 (409)
T TIGR00540 232 ------EIGL----LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL 301 (409)
T ss_pred ------HHHH----HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh
Confidence 1111 11111122222232222221 1125556666666777777777777777777764322111111
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006744 486 -NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564 (632)
Q Consensus 486 -~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 564 (632)
..........++.+.+.+.++..++..+..|+.....++.+.+.+.|++++|.+.|+........|+..++..+...+.
T Consensus 302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 302 PLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 1111122335677888888888777655555434556788888899999999999995443334688888889999999
Q ss_pred hcCCHHHHHHHHHHHHH
Q 006744 565 KHGTLEEARKVFTNLRE 581 (632)
Q Consensus 565 ~~g~~~~A~~~~~~m~~ 581 (632)
+.|+.++|.+++++...
T Consensus 382 ~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 382 QAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999987644
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=7.9e-12 Score=125.12 Aligned_cols=291 Identities=11% Similarity=0.050 Sum_probs=189.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhH--HHHHHHHHhcCCHHHH
Q 006744 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY--GVLIEGLVGEGKVGKA 292 (632)
Q Consensus 215 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~a 292 (632)
..|+++.|.+.+....+..-. ....|.....+..+.|+++.|.+.+.++.+.. |+...+ ......+...|+.+.|
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHH
Confidence 369999999888776554211 12334334455578899999999999988753 343322 2446788889999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHH-HHHHhcCChhHHHHHHHHHHH
Q 006744 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-VCCAEMGRMDNFFKLLAQMEK 371 (632)
Q Consensus 293 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~ 371 (632)
...++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++. .+..+- .++.
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~~a~~----------------- 233 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQQAWI----------------- 233 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHH-----------------
Confidence 9999999888755 6778888889999999999999999999887654222 221110 1110
Q ss_pred CCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHH
Q 006744 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451 (632)
Q Consensus 372 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 451 (632)
.++.......+.+...++++.+.+.-..+......+...+...|+.++|..++++..+. .+|...
T Consensus 234 -----------~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l-- 298 (398)
T PRK10747 234 -----------GLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL-- 298 (398)
T ss_pred -----------HHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--
Confidence 00000111122333444444444333336667777777788888888888888777663 344421
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHc
Q 006744 452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS 531 (632)
Q Consensus 452 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 531 (632)
.++.+....++.+++.+..+...+.. +-|...+..+...+.+.|++++|.+.|+..++. .|+...|..+...+.+.
T Consensus 299 ~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 299 VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRL 374 (398)
T ss_pred HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHc
Confidence 12333345577777877777777643 234566777777888888888888888877643 57777777777778888
Q ss_pred CCHHHHHHHHHHHHh
Q 006744 532 GEAEKIIEVLNEMTQ 546 (632)
Q Consensus 532 g~~~~a~~~~~~m~~ 546 (632)
|+.++|.+++++...
T Consensus 375 g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 375 HKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHh
Confidence 888888888877654
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2.6e-11 Score=114.55 Aligned_cols=388 Identities=11% Similarity=0.042 Sum_probs=247.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHhcCChhHH
Q 006744 180 SQGRIAEMLEILEKMRRNLCKPD-VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD-VMAYVTLIMGLCKGGRVVRG 257 (632)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a 257 (632)
..|.+++|+..+...++. .|| ..-|.....+|...|+|+++.+--.+..+. .|+ +..+..-..++-..|++++|
T Consensus 127 ~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred hcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHH
Confidence 456788888888887774 466 666777777778888888877776666654 343 33444555566666666666
Q ss_pred HHHHHHHH-HcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-CC--CCCCHhhHHHHHHHHHc-------------
Q 006744 258 HELFREMK-ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD-SG--YRADLGIYNSIIGGLCR------------- 320 (632)
Q Consensus 258 ~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g--~~~~~~~~~~li~~~~~------------- 320 (632)
+.=+.-.. -.|+. |..+--.+=+.+- ..|....++-.. .+ +-|+.....+....+..
T Consensus 203 l~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 203 LFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred HHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 53222111 11111 1111111111111 111111111111 11 12333222222221110
Q ss_pred ------------c---CCHHHHHHHHHHHHhC-CCCC--C---H------hcHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006744 321 ------------V---KQFDKAYKLFEVTVQD-DLAP--D---F------STVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373 (632)
Q Consensus 321 ------------~---g~~~~A~~~~~~m~~~-~~~p--~---~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 373 (632)
. ..+.+|...+.+-... ...+ + . .+.......+.-.|+.-.+..-|+..++..
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 0 1233333333221110 0111 1 1 111111122344678888999999988876
Q ss_pred CCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHH
Q 006744 374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453 (632)
Q Consensus 374 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 453 (632)
..+ ...|-.+..+|....+-++.+..|.+....++.+..+|..-.+.+.-.+++++|..=|++.+... +-+...|..+
T Consensus 357 ~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl 434 (606)
T KOG0547|consen 357 PAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQL 434 (606)
T ss_pred ccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHH
Confidence 543 33477777889999999999999999999998899999999999999999999999999998753 3345566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------CChHHHHHHHHHH
Q 006744 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS------GPTEFKYALTILH 527 (632)
Q Consensus 454 l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~p~~~~~~~l~~~ 527 (632)
--+..+.+.++++...|++.++. ++-.+..|+.....+...++++.|.+.|+.+++.... .+....--.++..
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence 66777889999999999999885 3445889999999999999999999999998865332 2222222222222
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 528 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
- -.+++..|++++++..+.. +-....|..|...-.+.|+.++|+++|++-...
T Consensus 514 q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 514 Q-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred c-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2 3389999999999999885 556678999999999999999999999987654
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=1.8e-14 Score=137.80 Aligned_cols=259 Identities=17% Similarity=0.120 Sum_probs=70.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcC-CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 006744 245 IMGLCKGGRVVRGHELFREMKENG-ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323 (632)
Q Consensus 245 i~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 323 (632)
...+.+.|++++|++++.+..... ..-|...|..+...+...++.+.|.+.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 334444444444444443322221 1112333333334444444455555555444443322 33333334433 34455
Q ss_pred HHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCccccHHHHHHHHhhhcccHHHHHHHHH
Q 006744 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK-FSVAADLEKFFEFLVGKEERIMMALDVFE 402 (632)
Q Consensus 324 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 402 (632)
+++|.+++++..+.. ++...+..++..+...++++++.++++.+.... .+.+..++.....++.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555544433322 223333444444445555555555554443321 12233334444444455555555555555
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 006744 403 ELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV 482 (632)
Q Consensus 403 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 482 (632)
+..+..+.+....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|..+|++..+.. +.|.
T Consensus 171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 5555555555566666666666666666666665555432 3344445555666666666666666666665533 2355
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 483 AAYNCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 483 ~~~~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
.....+.+++...|+.++|.++.+++.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 555666666666666666666665543
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=2.3e-12 Score=126.61 Aligned_cols=285 Identities=13% Similarity=0.074 Sum_probs=164.8
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCcCHHhHHHHHHHHHhcCChhHHHHH
Q 006744 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL--VEADVMAYVTLIMGLCKGGRVVRGHEL 260 (632)
Q Consensus 183 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~ 260 (632)
+..+|...|..+.+. +.-...+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+.-+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 556677777775443 22233555666677777777777777777776542 11245666666543322 112222
Q ss_pred H-HHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006744 261 F-REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339 (632)
Q Consensus 261 ~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 339 (632)
+ +.+.+.. +-.+.+|.++.++|.-.++.+.|++.|++.++.... ...+|+.+..-+....++|.|...|+..+....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 2222322 225667777777777777777777777777765332 566777777777777777777777776653221
Q ss_pred CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006744 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419 (632)
Q Consensus 340 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 419 (632)
. +...|..+...|.+.++++.|+-.|+++.+.++. +..+...+..++-+.|+.++|+.++++....++.++..--..+
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 1 2223334455666667777776666666655433 3344444555556666666666666666666555555544555
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006744 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477 (632)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 477 (632)
..+...+++++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|..+.+..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 5555666666666666666653 22233345555556666666666666666555543
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2.2e-11 Score=109.09 Aligned_cols=227 Identities=18% Similarity=0.142 Sum_probs=119.2
Q ss_pred cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccc---HHhHHHHHHHHHhcCCHHHH
Q 006744 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID---RAIYGVLIEGLVGEGKVGKA 292 (632)
Q Consensus 216 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a 292 (632)
.++.++|.++|-+|.+.. +-+..+--+|.+.|-+.|.++.|+.+++.+.++---+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 456677777777776542 23344555666667777777777777776665411101 11333455566666677777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHH-HHHHhcCChhHHHHHHHHHHH
Q 006744 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-VCCAEMGRMDNFFKLLAQMEK 371 (632)
Q Consensus 293 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~ 371 (632)
+.+|..+.+.+.. -......|+..|-+..+|++|+++-+++.+.+..+ |+.-| ..||.
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~----~~~eIAqfyCE---------------- 185 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT----YRVEIAQFYCE---------------- 185 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc----chhHHHHHHHH----------------
Confidence 7777666654322 34455566666666666776666666666554332 22111 11111
Q ss_pred CCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHH
Q 006744 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS 451 (632)
Q Consensus 372 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 451 (632)
+...+....+++.|..++.+..+.++.++.+--.+.+.+...|+++.|.+.++...+.+..--..+..
T Consensus 186 ------------LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 186 ------------LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred ------------HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 11112222344444555555444444444444445555555555555555555555544333333444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 006744 452 IAIQCHVESGDILEACECHNKIIEM 476 (632)
Q Consensus 452 ~ll~~~~~~g~~~~a~~~~~~~~~~ 476 (632)
.+..+|.+.|+.++....+..+.+.
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 5555555555555555555555543
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=3.5e-14 Score=135.82 Aligned_cols=259 Identities=16% Similarity=0.147 Sum_probs=72.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC-CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC
Q 006744 210 IRVLAAERNLDACLRVWEEMKKDLV-EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288 (632)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 288 (632)
...+.+.|++++|++++++...... ..|...|..+...+...++++.|.+.++++.+.+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4444555555555555543322211 122333333334444445555555555555544333 33444444444 45555
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHhcHHHHHHHHHhcCChhHHHHHHH
Q 006744 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD-LAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367 (632)
Q Consensus 289 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 367 (632)
.++|.++++...+.. ++...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|...++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555554443332 233344445555555555555555555544321 22333444444555555555555555555
Q ss_pred HHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCH
Q 006744 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS 447 (632)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 447 (632)
+..+..+. +..+...++.++...|+.+++.++++...+....+...|..+..+|...|+.++|+.+|++..... +.|.
T Consensus 171 ~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 171 KALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 55554432 334444455555555555555555555554443355556666666666677777777666666532 3355
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744 448 LSFSIAIQCHVESGDILEACECHNKII 474 (632)
Q Consensus 448 ~t~~~ll~~~~~~g~~~~a~~~~~~~~ 474 (632)
.....+..++...|+.++|.++..++.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 556666666666677777666666554
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=6.1e-11 Score=106.34 Aligned_cols=285 Identities=14% Similarity=0.155 Sum_probs=188.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH------HhHHHHHHHHHhcCCh
Q 006744 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV------MAYVTLIMGLCKGGRV 254 (632)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~ 254 (632)
....++|.++|-+|.+... -+..+--+|.+.|.+.|..+.|+++.+.+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 3578999999999998532 24556678889999999999999999998875 442 3445677788899999
Q ss_pred hHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHccCCHHHHHHH
Q 006744 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL----GIYNSIIGGLCRVKQFDKAYKL 330 (632)
Q Consensus 255 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~ 330 (632)
+.|+++|..+.+.+-. -......|+..|-...+|++|+++-+++.+.+..+.. ..|..|...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999999999886533 4567888999999999999999999999987655432 2455566666677788888888
Q ss_pred HHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC
Q 006744 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS 410 (632)
Q Consensus 331 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 410 (632)
+.+..+.+.+ ....-..+.+.....|++++|.+.++.+.+.+...
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y---------------------------------- 247 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEY---------------------------------- 247 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH----------------------------------
Confidence 8887765432 11122233355556666666666666655554433
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 006744 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490 (632)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 490 (632)
-..+...|..+|.+.|+.++....+.++.+.. ++...-..+........-.+.|..++.+-+.. +|+...+..+|+
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~ 323 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMD 323 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHH
Confidence 33445666667777777777777776666543 22223333333333333444454444443332 477777777776
Q ss_pred HHHh---cCCHHHHHHHHHHHh
Q 006744 491 GLCK---IGEIDAAMMLVRDCL 509 (632)
Q Consensus 491 ~~~~---~g~~~~A~~~~~~~~ 509 (632)
.-.. .|...+.+.+++.|+
T Consensus 324 ~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 324 YHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred hhhccccccchhhhHHHHHHHH
Confidence 5432 233444455555544
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=7.8e-12 Score=122.87 Aligned_cols=285 Identities=13% Similarity=0.061 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHhcHHHHHHHHHhcCChhHHHHHH
Q 006744 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD--LAPDFSTVNPLLVCCAEMGRMDNFFKLL 366 (632)
Q Consensus 289 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 366 (632)
..+|...|+.+.+.... +..+...+..+|...+++++|+++|+.+.+.. ..-+..+|.+.+-.+-+ +-++.++
T Consensus 335 ~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 46777777775444222 33555566777777888888888887776542 12245566666544322 1223333
Q ss_pred HHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcC
Q 006744 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446 (632)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 446 (632)
.+-.-.--+..+..+..+..+|.-+++.+.|++.|++..+.++....+|+.+..-+.....+|.|...|+.... .|
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~ 485 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VD 485 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CC
Confidence 22221222335667777777788888888888888888877777778888888888888888888888887764 33
Q ss_pred HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHH
Q 006744 447 SLS---FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523 (632)
Q Consensus 447 ~~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 523 (632)
... |.-+.-.|.+.++++.|+-.|+++.+-+. -+.+....+...+.+.|+.|+|+++++++.......|-... .
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~--~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY--H 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH--H
Confidence 344 44455578888899999988888887552 24666677778888889999999999988755433332222 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586 (632)
Q Consensus 524 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 586 (632)
.+..+...+++++|+..++++++. ++.+...|..++..|.+.|+.+.|+.-|.-+.+.+..+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 556667778999999999999887 56677788889999999999999999999888887765
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=2.5e-10 Score=105.79 Aligned_cols=286 Identities=12% Similarity=0.043 Sum_probs=203.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHH
Q 006744 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260 (632)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 260 (632)
.|++.+|+.+..+-.+.+-. ....|..-..+.-+.|+.+.+-+.+.+..+.--.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 47888888888887776544 34456666677778888899988888887763345666677777788888888888888
Q ss_pred HHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHccCCHHHHHHHHHH
Q 006744 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL-------GIYNSIIGGLCRVKQFDKAYKLFEV 333 (632)
Q Consensus 261 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 333 (632)
++++.+.+.. +..+.....++|.+.|++..+..++..|.+.|.--+. .+|+.+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 8888887665 6777888888899999999999999888888765443 4677777777766666666666665
Q ss_pred HHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChh
Q 006744 334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413 (632)
Q Consensus 334 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 413 (632)
.... .+-+...-.+++.-+.+.|+.++|.++..+..+.+.++. ++.. .-+.+.++.+.-++..+...+..+.++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHH--HhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 5432 233444556667777788888888888888887776554 1111 1234556666666666666666555667
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475 (632)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 475 (632)
.+.+|...|.+++.+.+|...|+...+ ..|+..+|+.+.+++.+.|+.++|.+++++...
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 777777777777777777777776655 457777777777777777777777777766654
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=3.7e-10 Score=104.63 Aligned_cols=160 Identities=13% Similarity=0.030 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 006744 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493 (632)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 493 (632)
+|+.+++-....+..+.-...|++.... .+-+...-.+++.-+.+.|+.++|.++..+..+.+..++.. ..-.+.
T Consensus 231 a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l 305 (400)
T COG3071 231 AWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRL 305 (400)
T ss_pred HHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhc
Confidence 4566666555555555555566555443 34445555666667777778888887777777766655511 122344
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006744 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573 (632)
Q Consensus 494 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 573 (632)
+-++.+.-++..++-....+..| ..+.+|..-|.+.+.+.+|.+.|+...+. .|+..+|+.+.+++.+.|+..+|.
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHH
Confidence 56666766777766666656556 44555777788888888888888877765 578888888888888888888888
Q ss_pred HHHHHHHHC
Q 006744 574 KVFTNLRER 582 (632)
Q Consensus 574 ~~~~~m~~~ 582 (632)
++.++....
T Consensus 382 ~~r~e~L~~ 390 (400)
T COG3071 382 QVRREALLL 390 (400)
T ss_pred HHHHHHHHH
Confidence 887776633
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.3e-09 Score=102.72 Aligned_cols=314 Identities=11% Similarity=0.045 Sum_probs=223.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHcc
Q 006744 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR--ADLGIYNSIIGGLCRV 321 (632)
Q Consensus 244 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~ 321 (632)
+..++-.....+++.+-.+.....|+.-+...-+....+.....|+++|+.+|+++.+..+- -|..+|..++-.--..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34555666678888888888888887766655555666667788899999999998887431 1566777665432221
Q ss_pred CCHH-HHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHH
Q 006744 322 KQFD-KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400 (632)
Q Consensus 322 g~~~-~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 400 (632)
.... -|..+++ -.... ..|..++.+-|.-.++.++|..+|++..+.+.. ....++.+..-|....+...|.+-
T Consensus 313 skLs~LA~~v~~---idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVSN---IDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHHH---hccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 1111 1222221 11222 347777778888888899999999998887654 455677777778888999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006744 401 FEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480 (632)
Q Consensus 401 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p 480 (632)
++...+-++.|-..|-.|.++|.-.+...-|+-.|++..+-. +-|...+.+|.++|.+.++.++|.+.|......|- .
T Consensus 387 YRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-t 464 (559)
T KOG1155|consen 387 YRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-T 464 (559)
T ss_pred HHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-c
Confidence 999999988899999999999999999999999999998753 45778899999999999999999999999998763 3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC---C-CCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006744 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV---A-SGPTEF-KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555 (632)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~-~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 555 (632)
+...+..|.+.|-+.++.++|...|++.++.. + ..+... .---|...+.+.+++++|..+......
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~--------- 535 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK--------- 535 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc---------
Confidence 66788999999999999999999998877531 1 222111 111134444566666666554433222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 556 CSAIISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
-.-..++|..+++++.+..
T Consensus 536 ---------~~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 536 ---------GETECEEAKALLREIRKIQ 554 (559)
T ss_pred ---------CCchHHHHHHHHHHHHHhc
Confidence 1334567777777776543
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=4.6e-09 Score=99.19 Aligned_cols=424 Identities=11% Similarity=0.072 Sum_probs=233.8
Q ss_pred CCHHHHHHHHHHHHhCCChhHHhHHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHH
Q 006744 150 HNFASYNALAYCLSRNNLFRAADQVPELMDS------------------QGRIAEMLEILEKMRRNLCKPDVFAYTAMIR 211 (632)
Q Consensus 150 ~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~------------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 211 (632)
.+...|-.....=-..+++..|+.+|++... ...+..|..++++....-+..| ..|-..+.
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 3445555555555556666667777665542 2355666666666665422222 23444444
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHH
Q 006744 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291 (632)
Q Consensus 212 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 291 (632)
+=-..|++..|.++|+.-.+. .|+...|++.|+.=.+.+.++.|..+++..+-. .|++.+|--....=.++|.+..
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 444567777777777766554 577777777777777777777777777766553 3666666666666666777777
Q ss_pred HHHHHHHHHHC-CC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHhcHHHHHHHHHhcCChhHHHHHH--
Q 006744 292 ACDLLKDLVDS-GY-RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP-DFSTVNPLLVCCAEMGRMDNFFKLL-- 366 (632)
Q Consensus 292 a~~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~-- 366 (632)
|..+|+...+. |- .-+...+.++..--.++..++.|.-+|+-.++.-..- ....|..+...--+.|+.....+..
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 77777666543 10 0122233333333345556666666666655431111 1233444444434455554444332
Q ss_pred ------HHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC--ChhHHHHHHH--------HHHhcCChhh
Q 006744 367 ------AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS--SVPIYNILMG--------ALLEIGEVKK 430 (632)
Q Consensus 367 ------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~li~--------~~~~~g~~~~ 430 (632)
+.+++.+. .+-+..-..+.+-...|+.+...++|++....-++ .-..|...|- .=....+.+.
T Consensus 306 KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 12222221 12222223334444556777777777776665544 1122222211 1123456666
Q ss_pred HHHHHHHHhhCCCCcCHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006744 431 ALYLFGKMRGLNLEVNSLSFSIAIQ----CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506 (632)
Q Consensus 431 A~~~~~~m~~~~~~p~~~t~~~ll~----~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 506 (632)
+.++|+...+. ++-...||..+=- --.+..++..|.+++...+ |.-|...+|...|..-.+.+++|...++++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77777666652 3334445444322 2335566777777776665 345666677777777777777777777777
Q ss_pred HHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG-CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 507 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
+.++-. .-+..+|......-...|+.+.|..+|+-+++.. ...-...|...|+--...|.++.|+.+++.++++..
T Consensus 462 kfle~~--Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 462 KFLEFS--PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHhcC--hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 766532 2234555555554556677777777777776552 112233455555555667777777777777776653
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.48 E-value=3.5e-08 Score=96.85 Aligned_cols=471 Identities=11% Similarity=0.069 Sum_probs=279.6
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCC------------HHHHH
Q 006744 121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR------------IAEML 188 (632)
Q Consensus 121 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~------------~~~a~ 188 (632)
++...+...+-|+.++.+++...+ .++..-+-.|..+++.+++++|.+.+..+..+.. +.+-.
T Consensus 143 lyl~Fv~~~~lPets~rvyrRYLk-----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elc 217 (835)
T KOG2047|consen 143 LYLKFVESHGLPETSIRVYRRYLK-----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELC 217 (835)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHh-----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHH
Confidence 444455566667777777776543 3444577788889999999998888777664321 11111
Q ss_pred ----------------HHHHHHHhCCCCcC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh
Q 006744 189 ----------------EILEKMRRNLCKPD--VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250 (632)
Q Consensus 189 ----------------~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 250 (632)
.+++.+... -+| -..|++|...|.+.|.+++|.++|++.... ..++..|..+.++|+.
T Consensus 218 dlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 218 DLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 111111111 122 245999999999999999999999987764 3345555555555543
Q ss_pred cC----------------------ChhHHHHHHHHHHHcCC-----------cccHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006744 251 GG----------------------RVVRGHELFREMKENGI-----------LIDRAIYGVLIEGLVGEGKVGKACDLLK 297 (632)
Q Consensus 251 ~g----------------------~~~~a~~~~~~m~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~ 297 (632)
-. +++-.+.-|+.+...+. .-++..|..-+. +..|+..+-...|.
T Consensus 294 FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyt 371 (835)
T KOG2047|consen 294 FEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYT 371 (835)
T ss_pred HHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHH
Confidence 21 12223334444433221 012222322222 23466777777787
Q ss_pred HHHHCCCCC------CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HhcHHHHHHHHHhcCChhHHHHHHHH
Q 006744 298 DLVDSGYRA------DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD---FSTVNPLLVCCAEMGRMDNFFKLLAQ 368 (632)
Q Consensus 298 ~m~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~ 368 (632)
+.+.. +.| -...|..+.+.|-.+|+++.|..+|++..+...+-- ..+|..-...-.+..+++.|+++++.
T Consensus 372 eAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~ 450 (835)
T KOG2047|consen 372 EAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR 450 (835)
T ss_pred HHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 77754 222 234678888999999999999999998876543311 12333333334455677788887776
Q ss_pred HHHCCC-----------Cc------cccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhH
Q 006744 369 MEKLKF-----------SV------AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKA 431 (632)
Q Consensus 369 ~~~~~~-----------~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 431 (632)
....-- ++ +..++..++..--..|-++....+|+++.+..+.++.+.-.....+-.+.-++++
T Consensus 451 A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfees 530 (835)
T KOG2047|consen 451 ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEES 530 (835)
T ss_pred hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHH
Confidence 532211 11 1123344444455678888889999999888777666655555666677788999
Q ss_pred HHHHHHHhhCCCCcCHH-HHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHhHHHHH--HHHHhcCCHHHHHHHH
Q 006744 432 LYLFGKMRGLNLEVNSL-SFSIAIQCHVE---SGDILEACECHNKIIEMSQVPSVAAYNCLT--KGLCKIGEIDAAMMLV 505 (632)
Q Consensus 432 ~~~~~~m~~~~~~p~~~-t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~ 505 (632)
.++|++-+..--.|+.. .|+..+.-+.+ ...++.|..+|++.++ |..|...-+-.|+ ..--+.|-...|+.++
T Consensus 531 Fk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiy 609 (835)
T KOG2047|consen 531 FKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIY 609 (835)
T ss_pred HHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99998877665456654 45555554433 3468999999999998 6555432222222 2223568888899999
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA---IISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 506 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
+++.......--...||+.|.-....=.+.....++++.++. -||...-.. ..+.=++.|..+.|+.++..-.+.
T Consensus 610 erat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 610 ERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 987654333333456777776655444444556667776665 455554333 333445778888888888766554
Q ss_pred CCCCCCChhhHHHHHHHHhhhchhH
Q 006744 583 KLLTEANTIVYDEILIEHMKKKTAD 607 (632)
Q Consensus 583 ~~~~~~~~~~~~~l~~~~~~~~~~~ 607 (632)
- .|..+...+..--.--.+.|+-+
T Consensus 688 ~-dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 688 C-DPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred C-CCcCChHHHHHHHHHHHhcCCHH
Confidence 2 34444443333333333333333
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=5.5e-10 Score=105.76 Aligned_cols=224 Identities=14% Similarity=0.074 Sum_probs=164.8
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHH
Q 006744 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA 397 (632)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 397 (632)
+.-.|+...|..-|+...+....++. .|..+...|...++.++..+.|....+.+.. ++.+|.--..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 34467788888888888776544333 2666777788888888888888888877654 566666666777777888899
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006744 398 LDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477 (632)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 477 (632)
..-|++....++.+...|-.+..+.-+.+++++++..|++..+. ++--...|+.....+...++++.|.+.|+..++..
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 99998888888778888888888888888999999999888775 45566788888888888999999999998888643
Q ss_pred CC-----CC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744 478 QV-----PS--VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547 (632)
Q Consensus 478 ~~-----p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 547 (632)
.. .+ +.+.-.++. +--.+++..|..++.+.++-. ......|..|...-.+.|+.++|+++|++....
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred cccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22 11 111122222 223488889999998877532 234566888888888889999999999886644
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.46 E-value=4.9e-11 Score=120.49 Aligned_cols=91 Identities=11% Similarity=0.103 Sum_probs=80.7
Q ss_pred HHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006744 189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG 268 (632)
Q Consensus 189 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 268 (632)
.++..+...|+.|+.+||..+|.-||..|+++.|- +|.-|.-.....+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34667778899999999999999999999999998 9999988877788899999999999999988877
Q ss_pred CcccHHhHHHHHHHHHhcCCHHH
Q 006744 269 ILIDRAIYGVLIEGLVGEGKVGK 291 (632)
Q Consensus 269 ~~p~~~~~~~li~~~~~~g~~~~ 291 (632)
.|...+|..|..+|...||+..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH
Confidence 5788899999999999999765
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.5e-09 Score=101.70 Aligned_cols=287 Identities=14% Similarity=0.059 Sum_probs=216.3
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHH
Q 006744 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386 (632)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 386 (632)
+........+-+...+++.+..++.+...+.. .+....+..-|.++...|+..+-..+=.++.+.-+..... +-.+..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~s-W~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALS-WFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcc-hhhHHH
Confidence 44455555667778899999999999988753 3455566666778888998888777777887766543333 333444
Q ss_pred HhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 006744 387 LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466 (632)
Q Consensus 387 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 466 (632)
.|...|+..+|.+.|.+...-+..-...|-.....|+-.|..++|+..+...-+. ++-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 4555599999999999988877666678999999999999999999988877653 111222233344468889999999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----C-hHHHHHHHHHHHHHcCCHHHHHHHH
Q 006744 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG----P-TEFKYALTILHVCRSGEAEKIIEVL 541 (632)
Q Consensus 467 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----p-~~~~~~~l~~~~~~~g~~~~a~~~~ 541 (632)
.++|.+..... +-|+..++-+.-.....+.+.+|..+|+..+...... + -..+++.|..+|.+.+.+++|+..+
T Consensus 400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999988643 3467888888888888899999999999877322111 1 3445778899999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhh
Q 006744 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602 (632)
Q Consensus 542 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~ 602 (632)
++.... .+.|..++.++.-.|...|+++.|.+.|.+..-..... .+-..++..++.
T Consensus 479 q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n----~~~~~lL~~aie 534 (611)
T KOG1173|consen 479 QKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN----IFISELLKLAIE 534 (611)
T ss_pred HHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc----HHHHHHHHHHHH
Confidence 999988 47899999999999999999999999999988765432 333445554443
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.41 E-value=6.3e-08 Score=95.15 Aligned_cols=389 Identities=12% Similarity=0.112 Sum_probs=241.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCcCHHhHHHHHHHHHhcCCh
Q 006744 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL------VEADVMAYVTLIMGLCKGGRV 254 (632)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~ 254 (632)
.|-.+-+..++++..+. +...-+-.|..+++.+++++|.+.+....... .+-+...|+-+-+..+++-+.
T Consensus 151 ~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~ 226 (835)
T KOG2047|consen 151 HGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDK 226 (835)
T ss_pred CCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcch
Confidence 34555666666666653 34446777888888999999988888775431 134455677666666665443
Q ss_pred hH---HHHHHHHHHHcCCccc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-------
Q 006744 255 VR---GHELFREMKENGILID--RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK------- 322 (632)
Q Consensus 255 ~~---a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g------- 322 (632)
-. ...+++.+... -+| ...|++|.+.|.+.|++++|.++|++....- .++.-|+.+.++|+.-.
T Consensus 227 ~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~ 302 (835)
T KOG2047|consen 227 VQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAK 302 (835)
T ss_pred hcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHH
Confidence 32 22333333322 233 3478899999999999999999998887652 23334444444444311
Q ss_pred ---------------CHHHHHHHHHHHHhCCC-----------CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCC-C-
Q 006744 323 ---------------QFDKAYKLFEVTVQDDL-----------APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK-F- 374 (632)
Q Consensus 323 ---------------~~~~A~~~~~~m~~~~~-----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~- 374 (632)
+++-...-|+.+..... .-+..+|..-+ -+..|+..+....+.++.+.- +
T Consensus 303 me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ 380 (835)
T KOG2047|consen 303 MELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPK 380 (835)
T ss_pred HhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcc
Confidence 12223333444433221 01122222222 123455666666776665531 1
Q ss_pred ---CccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc--
Q 006744 375 ---SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS----VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV-- 445 (632)
Q Consensus 375 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-- 445 (632)
.....++..+...|-..|+++.|..+|++..+...+. ..+|..-...=.++.+++.|+++++.....--.|
T Consensus 381 ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~ 460 (835)
T KOG2047|consen 381 KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPEL 460 (835)
T ss_pred cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhh
Confidence 1233456777888999999999999999998877663 3567777777788899999999988876432111
Q ss_pred ---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006744 446 ---------------NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510 (632)
Q Consensus 446 ---------------~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 510 (632)
+...|+..++.--..|-++....+|+++++..+. ++.+.......+-.+.-++++.++|++-+.
T Consensus 461 ~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 461 EYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred hhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 1224555555566678899999999999987664 322222223334556678999999988555
Q ss_pred cCCCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHH
Q 006744 511 NVASGPTEFKYALTILHVCRS---GEAEKIIEVLNEMTQEGCPPNEVICSAIISGM--CKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 511 ~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~ 581 (632)
......-...|+..+.-+.+. ...+.|..+|++.++ |++|...-+-.|+.+- -+.|....|+.++++.-.
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 433322334577666666533 378999999999999 6777655443443332 245888889998888643
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=3.5e-09 Score=107.42 Aligned_cols=452 Identities=12% Similarity=0.053 Sum_probs=242.0
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHh---------CCCCcCHHhHHHHHHHH
Q 006744 143 GKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRR---------NLCKPDVFAYTAMIRVL 213 (632)
Q Consensus 143 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~---------~~~~~~~~~~~~li~~~ 213 (632)
.+..|+.|+.++|..+|.-|+..|+.+.|- +|..|.-... ---..+|..... +--.|...+|+.|..+|
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksL-pv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSL-PVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAY 93 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccc-cccchhHHHHHhcccccccccCCCCCchhHHHHHHHHH
Confidence 355789999999999999999999999998 7776653210 000111111111 01147788999999999
Q ss_pred HhcCChhHHHHHHHH-HHh-------CC-----------------CCcCHHh----------HHHHHHHHHhc------C
Q 006744 214 AAERNLDACLRVWEE-MKK-------DL-----------------VEADVMA----------YVTLIMGLCKG------G 252 (632)
Q Consensus 214 ~~~g~~~~A~~~~~~-m~~-------~~-----------------~~p~~~~----------~~~li~~~~~~------g 252 (632)
.+.||+.. ++..++ |.. .| .-||..+ |..++..+... +
T Consensus 94 r~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~ 172 (1088)
T KOG4318|consen 94 RIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNA 172 (1088)
T ss_pred HhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccc
Confidence 99999765 222222 211 11 1122221 12222222111 1
Q ss_pred Ch-----------hHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 006744 253 RV-----------VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321 (632)
Q Consensus 253 ~~-----------~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 321 (632)
.+ .-..++....+...-.++..+|..++++-...|+++.|..++.+|.+.|+..+...|-.|+-+ .
T Consensus 173 p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~ 249 (1088)
T KOG4318|consen 173 PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---I 249 (1088)
T ss_pred hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---C
Confidence 00 111112211111111478888888888888899999999999999999888777766666655 7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhc----cc----
Q 006744 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE----ER---- 393 (632)
Q Consensus 322 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~---- 393 (632)
++...++.++.-|.+.|+.|+..|+...+..+.+.|....+. .|.+.+......+....++. .+
T Consensus 250 ~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~sq~~hg~tAavrsaa~rg~~a~k~l~~n 321 (1088)
T KOG4318|consen 250 NAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EGSQLAHGFTAAVRSAACRGLLANKRLRQN 321 (1088)
T ss_pred ccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cccchhhhhhHHHHHHHhcccHhHHHHHHH
Confidence 778888888888888899999999888777777655422211 11111111111111111111 01
Q ss_pred -HHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC--CCc-CHHHHHHHHHHHHHc--------
Q 006744 394 -IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN--LEV-NSLSFSIAIQCHVES-------- 460 (632)
Q Consensus 394 -~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p-~~~t~~~ll~~~~~~-------- 460 (632)
.......+.+..-.+.. ...+|...+. ...+|+-++..++-..|..-- ..+ +...|..++.-|.+.
T Consensus 322 l~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~ 400 (1088)
T KOG4318|consen 322 LRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSR 400 (1088)
T ss_pred HHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHH
Confidence 11111111111112222 2223332222 233566666665555553211 111 122233322222221
Q ss_pred --------------CCHHHHHHHHHHHHH----------------CCCC-------CCHHhHHHHHHHHHhcCCHHHHHH
Q 006744 461 --------------GDILEACECHNKIIE----------------MSQV-------PSVAAYNCLTKGLCKIGEIDAAMM 503 (632)
Q Consensus 461 --------------g~~~~a~~~~~~~~~----------------~~~~-------p~~~~~~~li~~~~~~g~~~~A~~ 503 (632)
.+..+..++...... ..+. +-...-+.++..|+..-+..+++.
T Consensus 401 i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~ 480 (1088)
T KOG4318|consen 401 IYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILC 480 (1088)
T ss_pred HHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111100 0000 111223445555655555555553
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG--CPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 504 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 581 (632)
.-++.-.. --...|..||.-++...+.+.|..+.++..... +..|..-+..+.+.+.+.+....+.+++.++.+
T Consensus 481 ~~ekye~~----lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 481 DEEKYEDL----LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS 556 (1088)
T ss_pred HHHHHHHH----HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 33222111 111457788888889999999999888876542 345566688888999999999999999999988
Q ss_pred CCCCCCCChhhHHHHHHHHhhhchhHHHHhhh
Q 006744 582 RKLLTEANTIVYDEILIEHMKKKTADLVLSGL 613 (632)
Q Consensus 582 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~l 613 (632)
.-...+....++-.++++....++.+.+.+.-
T Consensus 557 ~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~ 588 (1088)
T KOG4318|consen 557 SAENEPLVAIILFPLLNSGAPAGQQEKLKKLA 588 (1088)
T ss_pred HhhCCchHHHHHHHHHhhhhhccCHHHHHHHH
Confidence 54433333455666677666666655554433
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.37 E-value=6.9e-10 Score=116.25 Aligned_cols=231 Identities=11% Similarity=0.026 Sum_probs=122.4
Q ss_pred CHHhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh---------cCChhHHHHHHHHHHHc
Q 006744 202 DVFAYTAMIRVLAA-----ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK---------GGRVVRGHELFREMKEN 267 (632)
Q Consensus 202 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~ 267 (632)
+...|...+.+... .+++++|.++|++..+.. +-+...|..+..++.. .+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 34445455544321 133567777777777653 2234445444444331 23466777777777766
Q ss_pred CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHH
Q 006744 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN 347 (632)
Q Consensus 268 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 347 (632)
+.. +...+..+...+...|++++|...|++..+.++. +...|..+...+...|++++|+..+++..+.+.. +...+.
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 544 5666666666777777777777777777766543 4556666677777777777777777777664322 111222
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 006744 348 PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE 427 (632)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 427 (632)
.++..+...|++++|...++++.+...+.....+..+..++...|+.++|...+.++....+.+....+.+...|+..|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH-
Confidence 2333344456666666666555543322222333344444444555555555554444433333334444444444444
Q ss_pred hhhHHHHHHHH
Q 006744 428 VKKALYLFGKM 438 (632)
Q Consensus 428 ~~~A~~~~~~m 438 (632)
++|...++.+
T Consensus 490 -~~a~~~l~~l 499 (553)
T PRK12370 490 -ERALPTIREF 499 (553)
T ss_pred -HHHHHHHHHH
Confidence 2444444433
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=8.9e-10 Score=102.69 Aligned_cols=199 Identities=14% Similarity=0.023 Sum_probs=143.4
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHH
Q 006744 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459 (632)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 459 (632)
.+..+...+...|++++|.+.+++..+..+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 344445556666677777777776666555566777778888888888888888888777653 3345566667777788
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 006744 460 SGDILEACECHNKIIEMSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538 (632)
Q Consensus 460 ~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 538 (632)
.|++++|.+.++++.+.... .....+..+...+...|++++|...+++.+...+. +...+..+...+...|++++|.
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ--RPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--ChHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888764322 23445666777888888888888888887765322 3445666778888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 539 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
.++++..+. .+.+...+..++..+...|+.++|..+++.+.+.
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 888888876 3556677777788888889999988888877654
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.6e-08 Score=94.85 Aligned_cols=284 Identities=12% Similarity=0.024 Sum_probs=180.5
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHH
Q 006744 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351 (632)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 351 (632)
+........+-+...+++.+..++++.+.+..+ +....+..-|.++...|+..+-..+=.++.+.- +-...+|-++..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 334444555566667777777777777776533 244455555667777777766666666666543 224566777777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhH
Q 006744 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKA 431 (632)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 431 (632)
-|...|...+|.++|.+....+... ...+-.....|+-.|.-++|+..+....+.-.....-+--+..-|.+.+.++.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~f-gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTF-GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccc-cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 7777777777777777765544322 223344455566677777777777666554333222234455566777777778
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-C-CCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006744 432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM----SQ-V-PSVAAYNCLTKGLCKIGEIDAAMMLV 505 (632)
Q Consensus 432 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~-p~~~~~~~li~~~~~~g~~~~A~~~~ 505 (632)
.+.|.+..... +-|...++-+.-.....+.+.+|..+|+..+.. +. . .-..+++.|..+|.+.+.+++|+..+
T Consensus 400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 88777776532 345555666655556677777777777776621 00 0 12345677888888888888888888
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006744 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563 (632)
Q Consensus 506 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 563 (632)
++.+... ..+..+|.++.-.|...|+++.|++.|.+..-. .||-.+-..++..+
T Consensus 479 q~aL~l~--~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 479 QKALLLS--PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred HHHHHcC--CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 8877643 345667777777788888888888888887754 56666555555533
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=4.6e-12 Score=84.51 Aligned_cols=50 Identities=36% Similarity=0.676 Sum_probs=36.5
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh
Q 006744 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250 (632)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 250 (632)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777777664
No 62
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=2.9e-08 Score=90.43 Aligned_cols=184 Identities=9% Similarity=0.020 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHCCCCCCH-HhHHHH
Q 006744 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC-----HVESGDILEACECHNKIIEMSQVPSV-AAYNCL 488 (632)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l 488 (632)
--.|+-.|.+++++.+|..+.+++.- ..|-......+..+ ......+.-|.+.|+..-+.+..-|. .--.++
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 34455567777888888777766542 23333322222221 11112244455555555444433331 122344
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcC
Q 006744 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC-SAIISGMCKHG 567 (632)
Q Consensus 489 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g 567 (632)
..++.-..++|+.+-+++.+.. .-...|.+.|| +..+++..|++.+|.++|-......++ |..+| ..|.++|.++|
T Consensus 366 As~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcC
Confidence 5555555667777766665432 23345555565 677777777777777777665544333 34444 44556667777
Q ss_pred CHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhhchhH
Q 006744 568 TLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD 607 (632)
Q Consensus 568 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 607 (632)
+.+.|..++- +.+ .|......+..+-..+-+.+++-
T Consensus 443 kP~lAW~~~l---k~~-t~~e~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 443 KPQLAWDMML---KTN-TPSERFSLLQLIANDCYKANEFY 478 (557)
T ss_pred CchHHHHHHH---hcC-CchhHHHHHHHHHHHHHHHHHHH
Confidence 7777665543 332 22223334444444555555443
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.32 E-value=7.6e-09 Score=104.58 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=62.4
Q ss_pred HHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH
Q 006744 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463 (632)
Q Consensus 384 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 463 (632)
+...|...|++++|.+.+++..+..+..+..|..-...+-+.|++.+|.+.++..+... .-|...-+.....+.+.|++
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCH
Confidence 33444455555555555555555554455555555555555555555555555555543 23444444445555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHh------H--HHHHHHHHhcCCHHHHHHHHHHH
Q 006744 464 LEACECHNKIIEMSQVPSVAA------Y--NCLTKGLCKIGEIDAAMMLVRDC 508 (632)
Q Consensus 464 ~~a~~~~~~~~~~~~~p~~~~------~--~~li~~~~~~g~~~~A~~~~~~~ 508 (632)
++|.+++..+.+.+..|.... | .....+|.+.|++..|++.|..+
T Consensus 279 e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 279 EEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555555555554433221111 1 22344555666666665555443
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=1.4e-09 Score=114.03 Aligned_cols=253 Identities=11% Similarity=0.000 Sum_probs=178.8
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHH---------hcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC
Q 006744 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA---------AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252 (632)
Q Consensus 182 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 252 (632)
+..++|+..|++..+..+. +...|..+..++. ..+++++|...+++..+.+ +-+..++..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 3578899999998886432 4556666655443 2345889999999999875 447788888888899999
Q ss_pred ChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 006744 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332 (632)
Q Consensus 253 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 332 (632)
++++|...|++..+.+.. +...+..+...+...|+.++|...+++..+..+. +...+..++..+...|++++|+..++
T Consensus 353 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999999998644 6778888999999999999999999999987654 33333445555777899999999999
Q ss_pred HHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCCh
Q 006744 333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSV 412 (632)
Q Consensus 333 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 412 (632)
+..+....-+...+..+..++...|+.++|...+.++...... .......+...|...| +.|...++.+.+......
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 9876532223444666778888999999999999887654322 3333445555566666 477777777655332211
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 006744 413 PIYNILMGALLEIGEVKKALYLFGKMRGLN 442 (632)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 442 (632)
.....+-..|.-.|+-+.+..+ +++.+.+
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 1122244455556666666555 7776553
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.31 E-value=3.5e-09 Score=105.55 Aligned_cols=249 Identities=17% Similarity=0.149 Sum_probs=138.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHh-hHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC-
Q 006744 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDS-----GY-RADLG-IYNSIIGGLCRVKQFDKAYKLFEVTVQD-----DL- 339 (632)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~- 339 (632)
..+...|...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666888999999999999988887653 21 12222 2334667788888888888888887642 21
Q ss_pred CCC-HhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHH
Q 006744 340 APD-FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNI 417 (632)
Q Consensus 340 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~ 417 (632)
.|. ..+++.|..+|.+.|++++|...++...+ +++.......+ -...++.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhccChHHHHHHHHH
Confidence 111 23456666677888888887777665432 23321111111 1223566
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhC---CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 006744 418 LMGALLEIGEVKKALYLFGKMRGL---NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494 (632)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 494 (632)
++..++..+++++|..++....+. -..++. .--..+++.|...|.+
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~-------------------------------~~~a~~~~nl~~l~~~ 379 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN-------------------------------VNLAKIYANLAELYLK 379 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccc-------------------------------hHHHHHHHHHHHHHHH
Confidence 667777777777777777654321 011111 0112334444444444
Q ss_pred cCCHHHHHHHHHHHhhcC----C-CCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCC--CCCCHHHHHHHHHH
Q 006744 495 IGEIDAAMMLVRDCLGNV----A-SGP-TEFKYALTILHVCRSGEAEKIIEVLNEMT----QEG--CPPNEVICSAIISG 562 (632)
Q Consensus 495 ~g~~~~A~~~~~~~~~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~g--~~p~~~~~~~l~~~ 562 (632)
.|++++|.+++++++... + ..+ ....++.+...|.+.+++++|.++|.+.. ..| .+-...+|..|...
T Consensus 380 ~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~ 459 (508)
T KOG1840|consen 380 MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAAL 459 (508)
T ss_pred hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 444444444444443221 0 001 11223334444444444444444444322 222 22334578889999
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 006744 563 MCKHGTLEEARKVFTNLR 580 (632)
Q Consensus 563 ~~~~g~~~~A~~~~~~m~ 580 (632)
|...|+++.|.++.+.+.
T Consensus 460 Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 460 YRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHcccHHHHHHHHHHHH
Confidence 999999999999887775
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=1.2e-09 Score=98.26 Aligned_cols=229 Identities=11% Similarity=-0.003 Sum_probs=162.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhc
Q 006744 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286 (632)
Q Consensus 207 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 286 (632)
+.+.+.|.+.|.+.+|.+.|+.-.+. .|-+.||..|-+.|.+-.+.+.|+.++.+-.+. .+-|+.....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56777888888888888888877765 566778888888888888888888888877665 222444445566777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHH
Q 006744 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366 (632)
Q Consensus 287 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 366 (632)
++.++|.++|+...+.... ++.....+...|.-.++.+-|+.+|+.+.+.|+. +...|+.+.-+|.-.+++|.++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 8888888888888776443 5556666667777788888888888888888876 6667777777777888888888877
Q ss_pred HHHHHCCCC--ccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 006744 367 AQMEKLKFS--VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440 (632)
Q Consensus 367 ~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 440 (632)
.+....--. ...+++..+.......|++..|.+.|+-....+..+...+|.|...-.+.|++++|..++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 776654322 22233444444455566777777777766666666666777777777777777777777766554
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=1.9e-09 Score=100.47 Aligned_cols=95 Identities=20% Similarity=0.210 Sum_probs=41.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006744 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318 (632)
Q Consensus 239 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 318 (632)
..+..+...+...|++++|.+.+++..+.... +...+..+...|...|++++|.+.+++..+.... +...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 33444444444445555555555444443211 2334444444444444444444444444443222 233333444444
Q ss_pred HccCCHHHHHHHHHHHH
Q 006744 319 CRVKQFDKAYKLFEVTV 335 (632)
Q Consensus 319 ~~~g~~~~A~~~~~~m~ 335 (632)
...|++++|.+.+++..
T Consensus 110 ~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHcccHHHHHHHHHHHH
Confidence 44444444444444443
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.30 E-value=1.7e-07 Score=92.53 Aligned_cols=391 Identities=12% Similarity=0.081 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 006744 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE 263 (632)
Q Consensus 184 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 263 (632)
-++|.+....-.+..+ .+-++|+.+.-.+....++++|++.|......+ +.|...|.-+.-.-++.|+++.....-.+
T Consensus 57 ~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~ 134 (700)
T KOG1156|consen 57 KEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQ 134 (700)
T ss_pred hHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3444444443333322 355667776666666677777777777766654 34555565555555556666666666555
Q ss_pred HHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHH------HHHHccCCHHHHHHHHHHHHh
Q 006744 264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY-RADLGIYNSII------GGLCRVKQFDKAYKLFEVTVQ 336 (632)
Q Consensus 264 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~ 336 (632)
+.+.... ....|..++.++.-.|+...|..++++..+... .|+...|.... ....+.|..++|.+.+..-..
T Consensus 135 LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 135 LLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred HHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 5554222 445566666666667777777777766665431 23443333222 234455666666665554332
Q ss_pred CCCCCCHhcH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHH-HHHHHHHhCCCCChhH
Q 006744 337 DDLAPDFSTV-NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL-DVFEELKGKGYSSVPI 414 (632)
Q Consensus 337 ~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~ 414 (632)
. + .|...+ ..-...+.+.+++++|..++..++....+ +...+..+..++++-.+.-++. .+|....+.-+.....
T Consensus 214 ~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p 290 (700)
T KOG1156|consen 214 Q-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP 290 (700)
T ss_pred H-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc
Confidence 1 1 122222 23334556667777777777766665432 2333333444443222222232 4455444433221111
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC----------CCCCHH
Q 006744 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE-ACECHNKIIEMS----------QVPSVA 483 (632)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~~~----------~~p~~~ 483 (632)
-..=+.......-.+..-.++..+.+.|+++--..+.++..-=.+..-.++ +..+...+...| -.|...
T Consensus 291 ~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttl 370 (700)
T KOG1156|consen 291 RRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTL 370 (700)
T ss_pred hhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHH
Confidence 111111111122223334455556666654433333222221000000000 111111111110 134433
Q ss_pred hHH--HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006744 484 AYN--CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF-KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560 (632)
Q Consensus 484 ~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 560 (632)
.|+ .++..|-+.|+++.|..+++..++. .|+.+ .|-.=.+.+...|++++|..++++..+.. .+|..+-..-+
T Consensus 371 lWt~y~laqh~D~~g~~~~A~~yId~AIdH---TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcA 446 (700)
T KOG1156|consen 371 LWTLYFLAQHYDKLGDYEVALEYIDLAIDH---TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCA 446 (700)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHH
Confidence 333 4566677777888888777776643 34443 23334456667778888888877777764 55665555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 561 SGMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
.-..++...++|.++....-+.|.
T Consensus 447 KYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHccccHHHHHHHHHhhhccc
Confidence 666677777777777777777664
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.30 E-value=1.6e-07 Score=92.73 Aligned_cols=390 Identities=12% Similarity=0.053 Sum_probs=253.9
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHH
Q 006744 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261 (632)
Q Consensus 182 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 261 (632)
+++...+...+.+.+. ..-...+.....-.+...|+-++|.+....-.... .-+.+.|+.+.-.+-...++++|++.|
T Consensus 21 kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3444445555554442 11223333333344667899999999888777654 346678888888888889999999999
Q ss_pred HHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CC
Q 006744 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD-LA 340 (632)
Q Consensus 262 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~ 340 (632)
......+.. |...+.-|.-.-++.|+++.....-..+.+..+. ....|..+..++.-.|++..|..++++..+.. -.
T Consensus 99 ~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 99 RNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999887655 7778887777777888888888888777775433 56678888999999999999999999988664 34
Q ss_pred CCHhcHHHHH------HHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhH
Q 006744 341 PDFSTVNPLL------VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI 414 (632)
Q Consensus 341 p~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 414 (632)
|+...|.-.. ....+.|..+.|.+.+......-++ .......-...+.+.+++++|..++..+...++.+...
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Y 255 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDY 255 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHH
Confidence 5665554332 3345677778887777665443221 22233344556788999999999999999998888888
Q ss_pred HHHHHHHHHhcCChhhHH-HHHHHHhhCC---CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 006744 415 YNILMGALLEIGEVKKAL-YLFGKMRGLN---LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490 (632)
Q Consensus 415 ~~~li~~~~~~g~~~~A~-~~~~~m~~~~---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 490 (632)
|-.+..++.+-.+.-++. .+|....+.- -.|-....+. .....-.+....++..+.+.|+.+- +..+..
T Consensus 256 y~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv----l~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~S 328 (700)
T KOG1156|consen 256 YEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV----LNGEELKEIVDKYLRPLLSKGVPSV---FKDLRS 328 (700)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH----hCcchhHHHHHHHHHHHhhcCCCch---hhhhHH
Confidence 888888876333333444 6666655431 1111111111 1112223445556667777776542 333333
Q ss_pred HHHhcCCHHHHHHHH---HHHhhcC----------CCCChHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-H
Q 006744 491 GLCKIGEIDAAMMLV---RDCLGNV----------ASGPTEFKYA--LTILHVCRSGEAEKIIEVLNEMTQEGCPPNE-V 554 (632)
Q Consensus 491 ~~~~~g~~~~A~~~~---~~~~~~~----------~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ 554 (632)
.|-.-...+--.++. ...+... ...|....|+ .++..+-+.|+++.|..+++...++ .|+. .
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliE 406 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIE 406 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHH
Confidence 333222111111111 1111111 1135555444 5677788999999999999999987 4554 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 585 (632)
.|..-.+.+.+.|++++|..++++.++.+..
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 6667778899999999999999999998753
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=8.1e-08 Score=89.44 Aligned_cols=266 Identities=13% Similarity=-0.006 Sum_probs=107.2
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHH
Q 006744 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351 (632)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 351 (632)
|+.....+.+++...|+.++|+..|++....++. +......-.-.+.+.|+++....+...+....-. ....|-.-+.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~ 308 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQ 308 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhh
Confidence 4445555555555555555555555555443211 1111111122233445555555554444332100 1111111122
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhH
Q 006744 352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKA 431 (632)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 431 (632)
......+++.|+.+-++.++.+.. +...+-.-..++...|+.++|.-.|+......+-+..+|.-|+.+|...|++.+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 222334444444444444433221 1112222223334445555555555554444433444555555555555555555
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744 432 LYLFGKMRGLNLEVNSLSFSIAI-QCHV-ESGDILEACECHNKIIEMSQVPS-VAAYNCLTKGLCKIGEIDAAMMLVRDC 508 (632)
Q Consensus 432 ~~~~~~m~~~~~~p~~~t~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 508 (632)
..+-+..... ++-+..+...+. ..|. ...--++|.+++++-.+. .|+ ....+.+...+...|..++++.++++.
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 4443333221 122222222221 1111 111224444444444332 222 223334444444445555555555444
Q ss_pred hhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744 509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546 (632)
Q Consensus 509 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 546 (632)
+.. .||....+.|.+.+...+.+++|.+.|.....
T Consensus 465 L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 465 LII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred Hhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 422 34444444444444444444444444444443
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.27 E-value=1.5e-08 Score=102.54 Aligned_cols=290 Identities=13% Similarity=0.090 Sum_probs=204.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhc-----C
Q 006744 178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG-----G 252 (632)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g 252 (632)
+.+.|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ +.|..-|..+..+.... .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence 34567777777777664443 33345556677788999999999999999999986 33444455555555222 3
Q ss_pred ChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 006744 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK-VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331 (632)
Q Consensus 253 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 331 (632)
+.+...++++++.+.- |.......+.-.+..-.. -..+..++..+...|++ .+|+.|-..|......+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 5678888999887653 333333222222222112 23455666777778764 35667777777666666666666
Q ss_pred HHHHhC----C----------CCCCH--hcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHH
Q 006744 332 EVTVQD----D----------LAPDF--STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM 395 (632)
Q Consensus 332 ~~m~~~----~----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 395 (632)
...... + -.|.. .++..+...|...|++++|+++++..+++.+. ...++..-..++...|+++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHH
Confidence 665432 1 12333 24455667888999999999999999988643 4678888889999999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHH--------HHHHHHHHHHcCCHHHHH
Q 006744 396 MALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS--------FSIAIQCHVESGDILEAC 467 (632)
Q Consensus 396 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--------~~~ll~~~~~~g~~~~a~ 467 (632)
+|.+.++.....+..|-.+=+-.+..+.+.|++++|.+++......+..|-... ......+|.+.|++..|+
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999888888888889999999999999999999987765332211 133456889999999998
Q ss_pred HHHHHHHH
Q 006744 468 ECHNKIIE 475 (632)
Q Consensus 468 ~~~~~~~~ 475 (632)
+.|..+.+
T Consensus 326 k~~~~v~k 333 (517)
T PF12569_consen 326 KRFHAVLK 333 (517)
T ss_pred HHHHHHHH
Confidence 88776664
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.7e-11 Score=81.78 Aligned_cols=49 Identities=47% Similarity=0.813 Sum_probs=27.8
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHH
Q 006744 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284 (632)
Q Consensus 236 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 284 (632)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=9.1e-08 Score=87.26 Aligned_cols=410 Identities=11% Similarity=0.034 Sum_probs=199.7
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHH
Q 006744 129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTA 208 (632)
Q Consensus 129 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 208 (632)
.|+++.|+..+..++... .++...+-.|..++.-.|.+.+|..+-.... .+...-..
T Consensus 70 LgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~---------------------k~pL~~RL 126 (557)
T KOG3785|consen 70 LGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAP---------------------KTPLCIRL 126 (557)
T ss_pred hccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCC---------------------CChHHHHH
Confidence 456777777777665533 4444455445555555555555544433211 12223333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHH-HHHHHHhcC
Q 006744 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV-LIEGLVGEG 287 (632)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g 287 (632)
|++.-.+.++-++-..+-+.+.+. ...-.+|....-..-.+.+|++++.+....+ |+-...|. +.-+|.+..
T Consensus 127 lfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlD 199 (557)
T KOG3785|consen 127 LFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLD 199 (557)
T ss_pred HHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcc
Confidence 444444556555555544444321 1222223333333345666666666665542 22222222 223455555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhc-----CChhHH
Q 006744 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM-----GRMDNF 362 (632)
Q Consensus 288 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a 362 (632)
-++-+.++++-....-.. +...-|.......+.=.-..|+.-..++...+-. .|- .+.-.++. ..-+.|
T Consensus 200 Yydvsqevl~vYL~q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~~~-f~~~l~rHNLVvFrngEgA 273 (557)
T KOG3785|consen 200 YYDVSQEVLKVYLRQFPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQ----EYP-FIEYLCRHNLVVFRNGEGA 273 (557)
T ss_pred hhhhHHHHHHHHHHhCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----cch-hHHHHHHcCeEEEeCCccH
Confidence 566666666555543211 2333333333333322222333333333322211 011 11111221 233455
Q ss_pred HHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-------ChhhHHHHH
Q 006744 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIG-------EVKKALYLF 435 (632)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~ 435 (632)
++++--+.+.- +...-.++..|.+.+++.+|..+.+++... ++.-|-.-...++..| ...-|.+.|
T Consensus 274 LqVLP~L~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt---tP~EyilKgvv~aalGQe~gSreHlKiAqqff 346 (557)
T KOG3785|consen 274 LQVLPSLMKHI----PEARLNLIIYYLNQNDVQEAISLCKDLDPT---TPYEYILKGVVFAALGQETGSREHLKIAQQFF 346 (557)
T ss_pred HHhchHHHhhC----hHhhhhheeeecccccHHHHHHHHhhcCCC---ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Confidence 55555444321 122223444466778888877776654322 2222222222222223 233444444
Q ss_pred HHHhhCCCCcCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 006744 436 GKMRGLNLEVNSLS-FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514 (632)
Q Consensus 436 ~~m~~~~~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 514 (632)
.-.-..+..-|... -.++..++.-..++++.+.+++.+...-...|...+| +..+++..|.+.+|.++|-.+-. ..
T Consensus 347 qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~--~~ 423 (557)
T KOG3785|consen 347 QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISG--PE 423 (557)
T ss_pred HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcC--hh
Confidence 44433333333221 2334444455566777777777776655555555555 66777778888888888765431 11
Q ss_pred CChHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006744 515 GPTEFKYA-LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI-CSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587 (632)
Q Consensus 515 ~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 587 (632)
-.|..+|. .|.++|.+.++.+.|.+++-++.. +-+..+ ...+..-|.+++.+=-|-+.|+.+...++.|.
T Consensus 424 ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 424 IKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred hhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 13444554 455666777888777666544432 223333 33445567788888788888888877776653
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=9.4e-10 Score=98.84 Aligned_cols=228 Identities=12% Similarity=0.051 Sum_probs=110.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhc
Q 006744 312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE 391 (632)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 391 (632)
+.|..+|.+.|.+.+|.+.|+...+. .|-..||..|-++|.+..+.+.|+.++.+-.+. ++.+.........++...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 44556666666666666666655543 233345555556666666666666655554443 222333333344444444
Q ss_pred ccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006744 392 ERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN 471 (632)
Q Consensus 392 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 471 (632)
++.++|.++|+.+.+....++.....+...|.-.++.+-|+.+|+++.+.|+ -+...|+.+.-+|.-.+++|-++..|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 5555555555555555444555555555555555555555555555555553 234444444445555555555555555
Q ss_pred HHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744 472 KIIEMSQVPS--VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545 (632)
Q Consensus 472 ~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 545 (632)
+....-..|+ ..+|-.|....+..|++.-|.+.|+-++... ......++.|...-.+.|++++|..+++...
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 4443322222 2333334444444455555544444443221 1122333333333344444444444444333
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=4.3e-06 Score=81.97 Aligned_cols=135 Identities=12% Similarity=0.047 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHh-------hcCCCCChHHHHHHHHHHHHHcCCHH
Q 006744 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-------GNVASGPTEFKYALTILHVCRSGEAE 535 (632)
Q Consensus 463 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~p~~~~~~~l~~~~~~~g~~~ 535 (632)
..++.+++....+....-...+.-.++......|+++.|++++.... .+....|..+.+ +...+.+.++.+
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a--iv~l~~~~~~~~ 434 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA--IVALYYKIKDND 434 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH--HHHHHHhccCCc
Confidence 44555555555443222223344445555666777777777766211 112333443333 444455555555
Q ss_pred HHHHHHHHHHhC--CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhh
Q 006744 536 KIIEVLNEMTQE--GCPPNEV----ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602 (632)
Q Consensus 536 ~a~~~~~~m~~~--g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~ 602 (632)
.|..++.+.... .-.+... ++.-++..-.+.|+-++|..+++++.+.+. +++.+...++.++.+
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~---~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP---NDTDLLVQLVTAYAR 504 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC---chHHHHHHHHHHHHh
Confidence 555555544321 0011112 222223333355777777777777776543 244455555555554
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.17 E-value=2.4e-08 Score=99.78 Aligned_cols=244 Identities=18% Similarity=0.172 Sum_probs=157.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-cccHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC
Q 006744 238 VMAYVTLIMGLCKGGRVVRGHELFREMKEN-----GI-LIDRA-IYGVLIEGLVGEGKVGKACDLLKDLVDS-----GYR 305 (632)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~ 305 (632)
..+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++++|..+|+++... |-.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888999999999999999887654 21 22222 3344777899999999999999998752 322
Q ss_pred -C-CHhhHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC-CCCHh-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 006744 306 -A-DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD-----DL-APDFS-TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376 (632)
Q Consensus 306 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 376 (632)
| -..+++.|..+|++.|++++|..+++...+- |. .+... .++.+...|+..+++++|..++....+
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~----- 353 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK----- 353 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH-----
Confidence 1 2457888888999999999999888776531 11 11222 245556667777788887777765433
Q ss_pred cccHHHHHHHHhhhcccHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC-------CCcCHH
Q 006744 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLN-------LEVNSL 448 (632)
Q Consensus 377 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~p~~~ 448 (632)
++........ .-..+++.|...|.+.|++++|.+++++..... ..-...
T Consensus 354 -----------------------i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 354 -----------------------IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred -----------------------HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 2221111111 134578888888888888888888888775431 111133
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCC-CC-HHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 449 SFSIAIQCHVESGDILEACECHNKIIE----MSQV-PS-VAAYNCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 449 t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
.++.+...|.+.+.+++|.++|.+... .|.. |+ ..+|..|...|...|++++|+++.+.+.
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 456666667777777766666654432 2221 22 4556667777777777777777666544
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.16 E-value=7.8e-07 Score=89.77 Aligned_cols=446 Identities=14% Similarity=0.063 Sum_probs=282.2
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCHHHHHHHHH---HHHhCCChhHHhHHHHH----HHhcCCHHHHHHH----HHHHHhC
Q 006744 129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAY---CLSRNNLFRAADQVPEL----MDSQGRIAEMLEI----LEKMRRN 197 (632)
Q Consensus 129 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~l~~~----~~~~g~~~~a~~~----~~~m~~~ 197 (632)
.++++.++.-+..... .++.-+..++..+-. .|...++.+++ .++.. +..+.+.+++.-. +.++...
T Consensus 240 ~~~~~~~i~s~~~~l~-~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~ 317 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALL-RSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEESLIPRENIEDAILSLMLLLRKLRLK 317 (799)
T ss_pred CCCchHHHHhhhHHhh-cccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHhhccccccHHHHHHHHHHHHHHHHHh
Confidence 4466667766665544 345556555555443 34455666665 22222 2234455665443 3334444
Q ss_pred CCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcc-cHHhH
Q 006744 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI-DRAIY 276 (632)
Q Consensus 198 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~ 276 (632)
.+..|...|..|.-++...|+++.+.+.|++....- --....|+.+...+...|.-..|..+++........| |...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 556788999999999999999999999999877542 2356778888889999999999999998876654334 34444
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHhhHHHHHHHHHcc-----------CCHHHHHHHHHHHHhCCC-
Q 006744 277 GVLIEGLV-GEGKVGKACDLLKDLVDS--GY--RADLGIYNSIIGGLCRV-----------KQFDKAYKLFEVTVQDDL- 339 (632)
Q Consensus 277 ~~li~~~~-~~g~~~~a~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~- 339 (632)
-..-..|. +.|.+++++++-.+..+. +. ......|..+.-+|... ....++++.+++..+.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444444 456777777777776652 11 11333444444444422 224577888888877653
Q ss_pred CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006744 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419 (632)
Q Consensus 340 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 419 (632)
.|+...| +.--|+..++++.|.+...+..+.+...+...+..+..++...+++.+|+.+.+...+....|......-+
T Consensus 477 dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred CchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 3433333 33456678899999999999999877777888888888888999999999998876654332211111111
Q ss_pred HHHHhcCChhhHHHHHHHHh---------------------------------------------------hCC------
Q 006744 420 GALLEIGEVKKALYLFGKMR---------------------------------------------------GLN------ 442 (632)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~m~---------------------------------------------------~~~------ 442 (632)
..-..-++.++|+.....+. ..|
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 11111222222222111110 000
Q ss_pred ---CC--cC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744 443 ---LE--VN------SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 443 ---~~--p~------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 511 (632)
+. |+ ...+......+.+.+..++|..++.+..+.. .-....|......+...|.+++|.+.|...+.-
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 00 11 0122334445666777777777777776532 234556666667777888888888888877643
Q ss_pred CCCCCh-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 512 VASGPT-EFKYALTILHVCRSGEAEKIIE--VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 512 ~~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
.|+ +...+++...+.+.|+...|.. ++.++.+.+ +.+...|..+...+.+.|+.+.|-+.|....+...
T Consensus 714 ---dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 714 ---DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred ---CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 333 3456678888888887777777 888888886 67888888898888899999998888888877654
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2e-06 Score=80.40 Aligned_cols=293 Identities=14% Similarity=0.047 Sum_probs=211.7
Q ss_pred hcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhc-HHHHHHHHHhcCChhHH
Q 006744 285 GEGKVGKACDLLKDLVDS-GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST-VNPLLVCCAEMGRMDNF 362 (632)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a 362 (632)
-.++...+...+-.+... -+.-|+.....+...+...|+.++|+..|++.... .|+..+ .....-.+...|+.+..
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhH
Confidence 345555555555444433 24457788899999999999999999999987754 333222 22223344577888888
Q ss_pred HHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 006744 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442 (632)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 442 (632)
..+...+....-.....++. -.......++++.|..+-++....+..+...|-.-...+...|+.++|.-.|+..+...
T Consensus 286 ~~L~~~Lf~~~~~ta~~wfV-~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 286 SALMDYLFAKVKYTASHWFV-HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHHhhhhcchhhhhh-hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 88887776543111111111 12223456789999999999988887788888888889999999999999999987642
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH-HHHH-hcCCHHHHHHHHHHHhhcCCCCChHH-
Q 006744 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT-KGLC-KIGEIDAAMMLVRDCLGNVASGPTEF- 519 (632)
Q Consensus 443 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~~~~~~~~~p~~~- 519 (632)
+-+...|.-++..|...|.+.+|...-+...+. +.-+..+.+.+. ..+. .-..-++|.+++++.+.. .|+-.
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~---~P~Y~~ 439 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI---NPIYTP 439 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc---CCccHH
Confidence 457789999999999999999998887776653 233555555442 2222 223358899999987643 45532
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006744 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587 (632)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 587 (632)
..+.+...+...|..+.++.+++..... .+|....+.|.+.+...+.+++|++.|....+.++...
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 3445666677889999999999998875 68999999999999999999999999999998887643
No 79
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=5.2e-06 Score=81.42 Aligned_cols=163 Identities=16% Similarity=0.192 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHh--cCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCH
Q 006744 413 PIYNILMGALLE--IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN--------KIIEMSQVPSV 482 (632)
Q Consensus 413 ~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~p~~ 482 (632)
..+.+++..+.+ .....+|.+++...-+..-.-.......+++.....|+++.|.+++. .+.+.+.. +
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P 417 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--P 417 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--h
Confidence 334444444332 23466777777777654322234566667778889999999999999 55554443 4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CChHHHHHH----HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006744 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS-GPTEFKYAL----TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS 557 (632)
Q Consensus 483 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~p~~~~~~~----l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 557 (632)
.+...++..+.+.++-+.|..++.+.+..... .+......+ ++..-.+.|+-++|..+++++.+.. ++|..+..
T Consensus 418 ~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~ 496 (652)
T KOG2376|consen 418 GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLV 496 (652)
T ss_pred hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHH
Confidence 45567777888888877777777766532111 111122222 3333347799999999999999974 78999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 006744 558 AIISGMCKHGTLEEARKVFTNL 579 (632)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~m 579 (632)
.++.+|++. +.+.|..+-+.+
T Consensus 497 ~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 497 QLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHhc-CHHHHHHHhhcC
Confidence 999999876 467777665444
No 80
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.8e-05 Score=82.32 Aligned_cols=181 Identities=11% Similarity=0.069 Sum_probs=112.4
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 006744 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490 (632)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 490 (632)
...+|..+..+-.+.|...+|.+-|-+. -|...|..+++...+.|.+++-..++....+....|.+. +.||-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 4567899999999999999998877543 366789999999999999999999999888876666654 57888
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------------------CCC
Q 006744 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE--------------------GCP 550 (632)
Q Consensus 491 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--------------------g~~ 550 (632)
+|++.+++.+-.+++. +|+......+.+-|...|.++.|.-++.....- .-.
T Consensus 1175 AyAkt~rl~elE~fi~--------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA--------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHhchHHHHHHHhc--------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999998887766542 344444444455555555554444443321100 001
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhhchhHHHHhhhh
Q 006744 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK 614 (632)
Q Consensus 551 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~l~ 614 (632)
.+..||..+-.+|...+.+.-|. |-..++.. -..-+..++..|...+-+++++..|+
T Consensus 1247 ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iiv--hadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1247 NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIV--HADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred cchhHHHHHHHHHhchhhhhHHH-----hcCceEEE--ehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 23445555555555444333221 11122211 22234556666666666776666665
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=2.9e-07 Score=88.25 Aligned_cols=119 Identities=13% Similarity=-0.070 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHhCCC-CcC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHH
Q 006744 182 GRIAEMLEILEKMRRNLC-KPD--VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258 (632)
Q Consensus 182 g~~~~a~~~~~~m~~~~~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 258 (632)
+..+.++.-+.++..... .|+ ...|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 344555555555554311 111 2335555555555666666666665555543 234455555555566666666666
Q ss_pred HHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302 (632)
Q Consensus 259 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (632)
+.|++..+.... +..+|..+..++...|++++|.+.|+...+.
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 666655554322 3445555555555556666666666555554
No 82
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.4e-06 Score=84.42 Aligned_cols=387 Identities=11% Similarity=0.047 Sum_probs=214.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHhcCChh
Q 006744 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD-VMAYVTLIMGLCKGGRVV 255 (632)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~ 255 (632)
...+.|+++.|+..|.+.+..... |-+.|..-..+|+..|++++|++=-.+-++. .|+ ...|.-...++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 344678999999999999887654 8888999999999999999998877766655 455 467888999999999999
Q ss_pred HHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHH---HHHHHHHHC---CCCCCHhhHHHHHHHHHcc--------
Q 006744 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC---DLLKDLVDS---GYRADLGIYNSIIGGLCRV-------- 321 (632)
Q Consensus 256 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~---~~~~~m~~~---g~~~~~~~~~~li~~~~~~-------- 321 (632)
+|+.-|.+-.+.... +...++.|.+++.......+.. .++..+... ........|..++..+-+.
T Consensus 88 eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 999999998887544 6778888888872110000000 011111110 0000112233333322211
Q ss_pred --CCHHHHHHHHHHH-----HhCC-------CCC------------C----------HhcHHHHHHHHHhcCChhHHHHH
Q 006744 322 --KQFDKAYKLFEVT-----VQDD-------LAP------------D----------FSTVNPLLVCCAEMGRMDNFFKL 365 (632)
Q Consensus 322 --g~~~~A~~~~~~m-----~~~~-------~~p------------~----------~~~~~~ll~~~~~~~~~~~a~~~ 365 (632)
.++..|...+... ...+ ..| | ..-...+.++..+..+++.+.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 1111222111100 0000 111 0 11233455555566667777777
Q ss_pred HHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHH-------HHHHHhcCChhhHHHHHHHH
Q 006744 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL-------MGALLEIGEVKKALYLFGKM 438 (632)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m 438 (632)
+....... -+...++....+|...|.+..+...-....+.|.....-|+.+ ..+|.+.++++.|...|.+.
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 77666655 3455555666667777777776666666555554333333333 33455566677777777765
Q ss_pred hhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh
Q 006744 439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV-AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517 (632)
Q Consensus 439 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 517 (632)
......|+..+ +....+++........-.+ |.. .-...-...+.+.|++..|++.|.+++... .-|
T Consensus 325 Lte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~D 391 (539)
T KOG0548|consen 325 LTEHRTPDLLS---------KLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PED 391 (539)
T ss_pred hhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--Cch
Confidence 54433333211 1222223322222222211 111 111112444556666667776666666542 334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
...|.....+|.+.|.+..|+.=.+...+.. ++....|..=..++....+++.|.+.|.+.++.+
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556666666666666666666666665552 3334445555555555566666666666666665
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=3.2e-07 Score=79.20 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=23.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371 (632)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 371 (632)
|.-.|...|++..|.+-+++.++.+.. +..++..+...|.+.|+.+.|.+.|++..+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls 97 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALS 97 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHh
Confidence 333444444444444444444443211 223333333444444444444444444333
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.04 E-value=7.2e-06 Score=83.04 Aligned_cols=394 Identities=12% Similarity=0.094 Sum_probs=232.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH------------------hcCCHHHHHHHHHHHHhCCCCcC-HHhH
Q 006744 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMD------------------SQGRIAEMLEILEKMRRNLCKPD-VFAY 206 (632)
Q Consensus 146 ~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~------------------~~g~~~~a~~~~~~m~~~~~~~~-~~~~ 206 (632)
..+..|...|..|.-++.+.|+++.+.+.|++.. ..|.-..|+.+++.-......|+ ...+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 3456788888888888888888888888887654 23455566677766554432233 3333
Q ss_pred HHHHHHHH-hcCChhHHHHHHHHHHhC--C--CCcCHHhHHHHHHHHHhc-----------CChhHHHHHHHHHHHcCCc
Q 006744 207 TAMIRVLA-AERNLDACLRVWEEMKKD--L--VEADVMAYVTLIMGLCKG-----------GRVVRGHELFREMKENGIL 270 (632)
Q Consensus 207 ~~li~~~~-~~g~~~~A~~~~~~m~~~--~--~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~ 270 (632)
-..-..|. +.+.++++++.-.+.... + -......|..+.-+|... ....++++.+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33333333 346666666666555541 1 012334454444444322 1234666777777665443
Q ss_pred ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHhcHHHH
Q 006744 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD-DLAPDFSTVNPL 349 (632)
Q Consensus 271 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l 349 (632)
|..+...+.--|+..++++.|.+...+..+.+..-+...|..|.-.+...+++.+|+.+.+...+. |. |......-
T Consensus 477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~ 553 (799)
T KOG4162|consen 477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGK 553 (799)
T ss_pred -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhh
Confidence 333333444456777888888888888887755557888888888888888888888888766543 21 10000111
Q ss_pred HHHHHhcCChhHHHHHHHHHHH---------------------CCCC-----c--cccHHHHHHHHhhhcc---cHHHHH
Q 006744 350 LVCCAEMGRMDNFFKLLAQMEK---------------------LKFS-----V--AADLEKFFEFLVGKEE---RIMMAL 398 (632)
Q Consensus 350 l~~~~~~~~~~~a~~~~~~~~~---------------------~~~~-----~--~~~~~~~l~~~~~~~g---~~~~a~ 398 (632)
+..-...++.+++......+.. .|.. + ....+..+.......+ ..+...
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 1111112333333222222110 1110 0 0011111111111000 000000
Q ss_pred HHHHHHHhCCCC---ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744 399 DVFEELKGKGYS---SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475 (632)
Q Consensus 399 ~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 475 (632)
..+......... ....|......+.+.+..++|...+.+..... .-....|......+...|..++|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 000000000000 13457778888999999999998888887643 44556677777788899999999999999887
Q ss_pred CCCCCC-HHhHHHHHHHHHhcCCHHHHHH--HHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744 476 MSQVPS-VAAYNCLTKGLCKIGEIDAAMM--LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547 (632)
Q Consensus 476 ~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 547 (632)
.. |+ +....++..++.+.|+..-|.. ++.++++-.... ...|..+...+-+.|+.+.|.+.|....+.
T Consensus 713 ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n--~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 LD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN--HEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 43 44 6677889999999998777777 999988765443 445666899999999999999999988775
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.03 E-value=3.1e-07 Score=88.04 Aligned_cols=187 Identities=11% Similarity=-0.007 Sum_probs=81.4
Q ss_pred hhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 006744 388 VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467 (632)
Q Consensus 388 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 467 (632)
|...|+.++|...|++..+..+.+...|+.+...+...|++++|...|++..+.. +-+..++..+..++...|++++|.
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~ 152 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQ 152 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3344444444444444444444445555555555555555555555555555422 112334444444555555555555
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547 (632)
Q Consensus 468 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 547 (632)
+.|+...+.. |+..........+...++.++|...|++..... .++...+ .......|+...+ +.++.+.+.
T Consensus 153 ~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~--~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~ 224 (296)
T PRK11189 153 DDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL--DKEQWGW---NIVEFYLGKISEE-TLMERLKAG 224 (296)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC--CccccHH---HHHHHHccCCCHH-HHHHHHHhc
Confidence 5555555432 221111111111223445555555554433211 1221111 1122223333222 222222211
Q ss_pred ---CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 548 ---GC---PPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 548 ---g~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
.. +.....|..+...+.+.|++++|...|++..+.+
T Consensus 225 ~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 225 ATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 00 1123456666666666666666666666666655
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.02 E-value=2.1e-06 Score=85.65 Aligned_cols=198 Identities=12% Similarity=0.034 Sum_probs=97.2
Q ss_pred HHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CcCH--HHHHHHHHHHHHcCC
Q 006744 386 FLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL-EVNS--LSFSIAIQCHVESGD 462 (632)
Q Consensus 386 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~t~~~ll~~~~~~g~ 462 (632)
..+...|++++|.+.+++..+..+.+...+..+...|...|++++|...+++.....- .++. ..|..+...+...|+
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 3444555555555555555555555555566666666666666666666666554321 1221 233445556666677
Q ss_pred HHHHHHHHHHHHHCCCC-CCHHhH-H--HHHHHHHhcCCHHHHHHH---HHHHhhcCCCCChHHHHHHHHHHHHHcCCHH
Q 006744 463 ILEACECHNKIIEMSQV-PSVAAY-N--CLTKGLCKIGEIDAAMML---VRDCLGNVASGPTEFKYALTILHVCRSGEAE 535 (632)
Q Consensus 463 ~~~a~~~~~~~~~~~~~-p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 535 (632)
+++|..+++++...... +..... + .++.-+...|..+.+.+. ......................++...|+.+
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHH
Confidence 77777776666432211 111111 1 222222333322222221 1111000000111111123555666777788
Q ss_pred HHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 536 KIIEVLNEMTQEGCP--------PNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 536 ~a~~~~~~m~~~g~~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
.|..+++.+...... ...........++...|+.++|.+.+.......
T Consensus 282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 888877776653211 012222233334567888888888888777654
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=1.2e-06 Score=88.56 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=34.1
Q ss_pred cCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH
Q 006744 128 VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD 179 (632)
Q Consensus 128 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~ 179 (632)
..|+.+.|.+-.+.+ -+...|..+.++|.+.++++-|.-.+..|.
T Consensus 740 tiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~ 784 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMK 784 (1416)
T ss_pred EeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhh
Confidence 456777776665544 245689999999999999999988776665
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.01 E-value=5.4e-07 Score=77.81 Aligned_cols=198 Identities=16% Similarity=0.121 Sum_probs=119.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006744 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319 (632)
Q Consensus 240 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 319 (632)
+...|.-+|...|+...|.+-+++.++.+.. +..+|..+...|-+.|+.+.|.+.|++..+..+. +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 3444556667777777777777777766444 5566677777777777777777777777766544 5556666666777
Q ss_pred ccCCHHHHHHHHHHHHhCCCC-CCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHH
Q 006744 320 RVKQFDKAYKLFEVTVQDDLA-PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL 398 (632)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 398 (632)
..|++++|...|++....-.- --..+|..+.-+..+.|+.+.|...|++..+....
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~----------------------- 171 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ----------------------- 171 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-----------------------
Confidence 777777777777766654211 12345656655656666666666666665554332
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744 399 DVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475 (632)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 475 (632)
.....-.+.....+.|++-.|...++.....+. ++..+....|..-...|+.+.+.++=..+.+
T Consensus 172 ------------~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 172 ------------FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred ------------CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333344455555555666666666665555443 5555555555555566666655555444444
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.99 E-value=4.5e-06 Score=83.27 Aligned_cols=309 Identities=13% Similarity=0.029 Sum_probs=143.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CcCH-HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLV-EADV-MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280 (632)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 280 (632)
...|..+...+...|+.+.+.+.+....+... ..+. .........+...|++++|.+++++..+.... |...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-h
Confidence 34455555666666777766666655444321 1121 11222233445567777777777776665322 3333331 1
Q ss_pred HHHH----hcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHh
Q 006744 281 EGLV----GEGKVGKACDLLKDLVDSGYRAD-LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355 (632)
Q Consensus 281 ~~~~----~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 355 (632)
..+. ..+..+.+.+.++.. ....|+ ......+...+...|++++|...+++..+.... +...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence 1222 233344444444331 111122 223334445666677777777777766654322 33344555566666
Q ss_pred cCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHH
Q 006744 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLF 435 (632)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 435 (632)
.|++++|..++++..+..... ... ....|..+...+...|++++|..++
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~-~~~------------------------------~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCS-SML------------------------------RGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCC-cch------------------------------hHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666666666655432210 000 1223445556666666666666666
Q ss_pred HHHhhCCC-CcCHHHH-H--HHHHHHHHcCCHHHHHHH--H-HHHHHCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006744 436 GKMRGLNL-EVNSLSF-S--IAIQCHVESGDILEACEC--H-NKIIEMSQ-VPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507 (632)
Q Consensus 436 ~~m~~~~~-~p~~~t~-~--~ll~~~~~~g~~~~a~~~--~-~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 507 (632)
++...... .+..... + .++.-+...|..+.+.+. . ........ ............++...|+.++|..+++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 210 DTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 66543221 1111111 1 222222233322222222 1 11111100 01111222455566677788888887777
Q ss_pred HhhcCCC---CC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744 508 CLGNVAS---GP----TEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547 (632)
Q Consensus 508 ~~~~~~~---~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 547 (632)
+...... .. .....-....++...|+.++|.+.+.+....
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 290 LKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6543211 00 1111222333445778888888887776543
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.94 E-value=1.2e-05 Score=90.98 Aligned_cols=393 Identities=10% Similarity=-0.005 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHhC----CChhHHhHHHH----HHHhcCCHHHHHHHHHHHHhCCCCcCH-HhHHHHHHHHHhcCChhHHH
Q 006744 153 ASYNALAYCLSRN----NLFRAADQVPE----LMDSQGRIAEMLEILEKMRRNLCKPDV-FAYTAMIRVLAAERNLDACL 223 (632)
Q Consensus 153 ~~~~~li~~~~~~----~~~~~a~~l~~----~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~ 223 (632)
+.|+.++.-+.+. ...+....+.. .+...|++.+|......... .+.. .........+...|+++.+.
T Consensus 318 yr~H~L~r~~l~~~l~~~~~~~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~ 394 (903)
T PRK04841 318 FRYHPLFASFLRHRCQWELAQELPELHRAAAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLE 394 (903)
T ss_pred EehhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHH
Confidence 4466666555433 23444434433 34456777777665544321 1100 11112223445567777777
Q ss_pred HHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC------ccc--HHhHHHHHHHHHhcCCHHHHHHH
Q 006744 224 RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI------LID--RAIYGVLIEGLVGEGKVGKACDL 295 (632)
Q Consensus 224 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------~p~--~~~~~~li~~~~~~g~~~~a~~~ 295 (632)
.+++.+.......+..........+...|++++|..++....+.-- .+. ......+...+...|++++|...
T Consensus 395 ~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 474 (903)
T PRK04841 395 ECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERL 474 (903)
T ss_pred HHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7776653211111222233444555677899999888887654211 111 12222334556678999999999
Q ss_pred HHHHHHCCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC---CC--CHhcHHHHHHHHHhcCChhHHHHHH
Q 006744 296 LKDLVDSGYRAD----LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL---AP--DFSTVNPLLVCCAEMGRMDNFFKLL 366 (632)
Q Consensus 296 ~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~ 366 (632)
+++....-...+ ...++.+...+...|++++|...+++...... .+ ...++..+...+...|+++.|...+
T Consensus 475 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 554 (903)
T PRK04841 475 AELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQ 554 (903)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 988766311112 12445566677788999999988887764211 11 1223445566778889999998888
Q ss_pred HHHHHC----CCCc---cccHHHHHHHHhhhcccHHHHHHHHHHHHhC----CCC-ChhHHHHHHHHHHhcCChhhHHHH
Q 006744 367 AQMEKL----KFSV---AADLEKFFEFLVGKEERIMMALDVFEELKGK----GYS-SVPIYNILMGALLEIGEVKKALYL 434 (632)
Q Consensus 367 ~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A~~~ 434 (632)
++.... +... .......+..++...|++++|...+.+.... +.. ....+..+...+...|++++|...
T Consensus 555 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 634 (903)
T PRK04841 555 EKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRY 634 (903)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 776542 2111 1122333445566679999998888776442 111 234455566777888999999888
Q ss_pred HHHHhhCCCCc-CHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHH
Q 006744 435 FGKMRGLNLEV-NSLSF-----SIAIQCHVESGDILEACECHNKIIEMSQVPS---VAAYNCLTKGLCKIGEIDAAMMLV 505 (632)
Q Consensus 435 ~~~m~~~~~~p-~~~t~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~ 505 (632)
+.+.....-.. ....+ ...+..+...|+.+.|..++........... ...+..+..++...|+.++|...+
T Consensus 635 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l 714 (903)
T PRK04841 635 LNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIIL 714 (903)
T ss_pred HHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 87775421000 11111 1112334557888888888766543211111 111345666778888899998888
Q ss_pred HHHhhcC---CCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006744 506 RDCLGNV---ASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548 (632)
Q Consensus 506 ~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 548 (632)
++++... +...+ ..+...+..++...|+.++|...+.+..+..
T Consensus 715 ~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 715 EELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8876431 11221 2345556667778889899988888887764
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.94 E-value=1.1e-05 Score=91.22 Aligned_cols=338 Identities=11% Similarity=-0.012 Sum_probs=211.8
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCC--HhhHHHHHHHH
Q 006744 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY------RAD--LGIYNSIIGGL 318 (632)
Q Consensus 247 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------~~~--~~~~~~li~~~ 318 (632)
.....|+++.+..+++.+.......+..........+...|+++++...++.....-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445577777777766552211111222334445566778999999999987754311 111 11222233456
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCH----hcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-----cccHHHHHHHHhh
Q 006744 319 CRVKQFDKAYKLFEVTVQDDLAPDF----STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV-----AADLEKFFEFLVG 389 (632)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~ 389 (632)
...|++++|...+++........+. ...+.+...+...|+++.|...+.+.....-.. .......+..++.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6899999999999987753111121 233455566778999999999998876432111 1123344556677
Q ss_pred hcccHHHHHHHHHHHHhC----CCC----ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC--CCc--CHHHHHHHHHHH
Q 006744 390 KEERIMMALDVFEELKGK----GYS----SVPIYNILMGALLEIGEVKKALYLFGKMRGLN--LEV--NSLSFSIAIQCH 457 (632)
Q Consensus 390 ~~g~~~~a~~~~~~~~~~----~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p--~~~t~~~ll~~~ 457 (632)
..|+++.|...+++.... +.. ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998875442 211 22345556677788899999999998875531 112 223444456677
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHhH-----HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh--HHHHHHHHHHHH
Q 006744 458 VESGDILEACECHNKIIEMSQVP-SVAAY-----NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT--EFKYALTILHVC 529 (632)
Q Consensus 458 ~~~g~~~~a~~~~~~~~~~~~~p-~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 529 (632)
...|+.++|.+.+.......... ....+ ...+..+...|+.+.|...+..........+. ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999998886431111 11111 11224455689999999998775432111111 111345667778
Q ss_pred HcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 530 RSGEAEKIIEVLNEMTQE----GCPPN-EVICSAIISGMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 530 ~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
..|++++|..++++.... |...+ ..++..+..++.+.|+.++|...+.+..+..-
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 889999999999987754 32222 24566777888999999999999999988753
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.93 E-value=7.2e-06 Score=82.17 Aligned_cols=192 Identities=16% Similarity=0.082 Sum_probs=123.0
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHH
Q 006744 318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA 397 (632)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 397 (632)
+...|+++.|+.-|-+.. .....+.+.....+|.+|..+++.+..... ....|..+..-|+..|+++.|
T Consensus 716 l~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHH
Confidence 344455555555543321 122345566677888999999988877653 345677788889999999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006744 398 LDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477 (632)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 477 (632)
+++|.+. ..++-.|..|.+.|+++.|.++-++.. |.......|..-..-+-+.|++.+|.++|-.+-
T Consensus 785 e~lf~e~--------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~--- 851 (1636)
T KOG3616|consen 785 EELFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG--- 851 (1636)
T ss_pred HHHHHhc--------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---
Confidence 9998753 347778899999999999998877654 333444556665666777888888887775442
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006744 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543 (632)
Q Consensus 478 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 543 (632)
.|+ ..|.+|-+.|..+..+++..+-..+ .-..|...+..-+-..|+...|.+.|-+
T Consensus 852 -~p~-----~aiqmydk~~~~ddmirlv~k~h~d----~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 852 -EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD----HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred -Cch-----HHHHHHHhhCcchHHHHHHHHhChh----hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 243 2356677777777777777653211 1112223344445555666666655543
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=7.9e-06 Score=73.17 Aligned_cols=278 Identities=9% Similarity=0.003 Sum_probs=164.0
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHH-HHHHHHhcCChhHHHHH
Q 006744 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT-LIMGLCKGGRVVRGHEL 260 (632)
Q Consensus 182 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~ 260 (632)
.++++|++++..-.++.. .+......|...|....++..|-+.|+++... -|...-|.. -...+-+.+.+..|+.+
T Consensus 24 ~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred hhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 455556666655555432 26777888888889999999999999998765 466555543 24566777888999999
Q ss_pred HHHHHHcCCcccHHhHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006744 261 FREMKENGILIDRAIYGVLIE--GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338 (632)
Q Consensus 261 ~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 338 (632)
...|... ++...-..-+. .....+++..+..++++....| +..+.+.......+.|++++|.+-|+...+-+
T Consensus 101 ~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 101 AFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 8877653 12111111122 2335677778888887776432 44455555556678899999999999888764
Q ss_pred CCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccH----------------------------HHHHHHHhhh
Q 006744 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL----------------------------EKFFEFLVGK 390 (632)
Q Consensus 339 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------------------~~~l~~~~~~ 390 (632)
---....|+..+ +..+.++++.|+++..++++.|+...+.+ ++.-..++.+
T Consensus 175 GyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq 253 (459)
T KOG4340|consen 175 GYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQ 253 (459)
T ss_pred CCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhh
Confidence 333456777655 44577889999999999888876421111 1111112345
Q ss_pred cccHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 006744 391 EERIMMALDVFEELKGKGYS--SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468 (632)
Q Consensus 391 ~g~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 468 (632)
.|+.+.|.+.+..|..+... |+.+...+.-.- ..+++.+..+-+.-+...+ +--..||..++-.||+..-++.|-.
T Consensus 254 ~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAAD 331 (459)
T KOG4340|consen 254 LRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAAD 331 (459)
T ss_pred cccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHH
Confidence 56666666666555543332 333333322111 1233333333333333332 2234556666666666666666555
Q ss_pred HHH
Q 006744 469 CHN 471 (632)
Q Consensus 469 ~~~ 471 (632)
++.
T Consensus 332 vLA 334 (459)
T KOG4340|consen 332 VLA 334 (459)
T ss_pred HHh
Confidence 554
No 94
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.84 E-value=0.00015 Score=70.82 Aligned_cols=133 Identities=11% Similarity=0.159 Sum_probs=80.8
Q ss_pred CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHH
Q 006744 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL 279 (632)
Q Consensus 200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 279 (632)
+-|+.+|+.||+-+... .++++.+.++++... .+-....|..-|..-.+.++++....+|.+....-+ +...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 34788899988866555 888999999988754 233557788888888888899999999988876533 45555555
Q ss_pred HHHHHh-cCCHH----HHHHHHHHHH-HCCCCC-CHhhHHHHHHH---------HHccCCHHHHHHHHHHHHh
Q 006744 280 IEGLVG-EGKVG----KACDLLKDLV-DSGYRA-DLGIYNSIIGG---------LCRVKQFDKAYKLFEVTVQ 336 (632)
Q Consensus 280 i~~~~~-~g~~~----~a~~~~~~m~-~~g~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~ 336 (632)
++---+ .|+.. ...+.|+-.. +.|+.+ +...|+..+.- |..+.+++...++|+++..
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 543322 22222 2233333333 234322 22345544432 3334456666677776654
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.84 E-value=5.4e-07 Score=85.04 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=31.4
Q ss_pred ChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHH
Q 006744 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI-DAAMMLV 505 (632)
Q Consensus 427 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~ 505 (632)
.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+... -+..+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 344444455444332 233444444444444444444444444444433221 1233333344444444443 3333444
Q ss_pred HHH
Q 006744 506 RDC 508 (632)
Q Consensus 506 ~~~ 508 (632)
.++
T Consensus 260 ~qL 262 (290)
T PF04733_consen 260 SQL 262 (290)
T ss_dssp HHC
T ss_pred HHH
Confidence 443
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.81 E-value=1.8e-07 Score=88.20 Aligned_cols=150 Identities=19% Similarity=0.162 Sum_probs=87.5
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHH----Hhhhcc
Q 006744 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF----LVGKEE 392 (632)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g 392 (632)
.+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.+- ..+...+.. ++...+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e---D~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE---DSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC---CHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHhCch
Confidence 344455555555555421 1333444455555566666666666655554321 122222222 222234
Q ss_pred cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 006744 393 RIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI-LEACECHN 471 (632)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~ 471 (632)
.+.+|..+|+++.+....++.+.|.+..++...|++++|.+++.+....+ +-+..+...++.+....|+. +.+.+++.
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 57777777777776655577778888888888888888888888877654 34556667777777777777 66777777
Q ss_pred HHHHC
Q 006744 472 KIIEM 476 (632)
Q Consensus 472 ~~~~~ 476 (632)
++...
T Consensus 261 qL~~~ 265 (290)
T PF04733_consen 261 QLKQS 265 (290)
T ss_dssp HCHHH
T ss_pred HHHHh
Confidence 77654
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4.8e-05 Score=74.14 Aligned_cols=381 Identities=16% Similarity=0.128 Sum_probs=230.5
Q ss_pred HHHHhCCChhHHhHHHHHHH------------------hcCCHHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHhcCChh
Q 006744 160 YCLSRNNLFRAADQVPELMD------------------SQGRIAEMLEILEKMRRNLCKPD-VFAYTAMIRVLAAERNLD 220 (632)
Q Consensus 160 ~~~~~~~~~~~a~~l~~~~~------------------~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~ 220 (632)
++....|+++.|..+|...+ +.|++++|+.--.+-++. .|+ ...|.-...++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 45567899999999998765 346777777766666553 455 567899999999999999
Q ss_pred HHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHH------HHHHHc---CCcccHHhHHHHHHHHHhc-----
Q 006744 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF------REMKEN---GILIDRAIYGVLIEGLVGE----- 286 (632)
Q Consensus 221 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~------~~m~~~---~~~p~~~~~~~li~~~~~~----- 286 (632)
+|+.-|.+-++.. +-|...++.+.+++.... ++.+.| ..+... ........|..++..+-+.
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999988764 345677777777772110 111111 111000 0000111233333222111
Q ss_pred -----CCHHHHHHHHHHH-----HHCC-------CCC----------------------CHhhHHHHHHHHHccCCHHHH
Q 006744 287 -----GKVGKACDLLKDL-----VDSG-------YRA----------------------DLGIYNSIIGGLCRVKQFDKA 327 (632)
Q Consensus 287 -----g~~~~a~~~~~~m-----~~~g-------~~~----------------------~~~~~~~li~~~~~~g~~~~A 327 (632)
..+..+...+... ...| ..| -..-...+.++..+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 1111111111110 0000 111 012244567777888899999
Q ss_pred HHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcccc---H---HHHHHHHhhhcccHHHHHHHH
Q 006744 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD---L---EKFFEFLVGKEERIMMALDVF 401 (632)
Q Consensus 328 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~---~~~l~~~~~~~g~~~~a~~~~ 401 (632)
++-+....+.. -+..-++....+|...|.+..+...-....+.|...-.. + ...+...|.+.++++.+...|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 99998888765 345555666678889998888877777766665431111 1 111333577788899999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006744 402 EELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL-SFSIAIQCHVESGDILEACECHNKIIEMSQVP 480 (632)
Q Consensus 402 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p 480 (632)
.+....... -....+....+++....+...-. .|+.. -...-...+.+.|++..|...|.++++.. +-
T Consensus 322 ~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 322 QKALTEHRT--------PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 886544221 11222334445555555544432 33331 12222556788999999999999999876 44
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006744 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559 (632)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 559 (632)
|...|....-+|.+.|.+..|++-.+..++. .|+ ...|.-=..++....++++|++.|++..+.. |+..-+..-
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~ 465 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIEL---DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDG 465 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHH
Confidence 6888999999999999999999988887765 333 2334333444445578999999999998874 444433333
Q ss_pred HHHHH
Q 006744 560 ISGMC 564 (632)
Q Consensus 560 ~~~~~ 564 (632)
+.-|.
T Consensus 466 ~~rc~ 470 (539)
T KOG0548|consen 466 YRRCV 470 (539)
T ss_pred HHHHH
Confidence 33333
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=1.3e-06 Score=85.50 Aligned_cols=223 Identities=12% Similarity=0.087 Sum_probs=146.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHH
Q 006744 247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326 (632)
Q Consensus 247 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 326 (632)
-+.+.|++.+|.-.|+..++.++. +...|..|.......++-..|+..+++..+..+. +....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 346678888888888888877665 7778888888888888888888888888887655 66777777788888888888
Q ss_pred HHHHHHHHHhCCCC-----C---CHhcHHHHHHHHHhcCChhHHHHHHHHH-HHCCCCccccHHHHHHHHhhhcccHHHH
Q 006744 327 AYKLFEVTVQDDLA-----P---DFSTVNPLLVCCAEMGRMDNFFKLLAQM-EKLKFSVAADLEKFFEFLVGKEERIMMA 397 (632)
Q Consensus 327 A~~~~~~m~~~~~~-----p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a 397 (632)
|++.++.......+ + +...-.. ..+.....+....++|-++ ...+..+++.+...|..+|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 88888776543211 0 0000000 0111111223334444333 3344446777777777777777777777
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744 398 LDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL-SFSIAIQCHVESGDILEACECHNKIIE 475 (632)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~ 475 (632)
...|+......+.|...||.|...++...+.++|+.-|.+..+ ++|+.+ ....|.-.|...|.+++|.+.|-.++.
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777776 455533 333344466777777777766655543
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=6.5e-06 Score=83.58 Aligned_cols=335 Identities=12% Similarity=0.101 Sum_probs=196.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-C-------C-CcCHHhHHHHHHHHHh
Q 006744 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD-L-------V-EADVMAYVTLIMGLCK 250 (632)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-------~-~p~~~~~~~li~~~~~ 250 (632)
..|+.+.|.+-.+-+ .+...|..|.+.|.+.++++-|.-.+-.|... | . .++ .+-.-+.-....
T Consensus 740 tiG~MD~AfksI~~I------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFI------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred EeccHHHHHHHHHHH------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 457777777666554 26677888888888888888777777666432 1 0 121 222223333456
Q ss_pred cCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 006744 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330 (632)
Q Consensus 251 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (632)
.|.+++|+.+|++.++. ..|=..|-..|.+++|.++-+.=-.-.+ ..||..-...+-..++.+.|+++
T Consensus 813 LgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHH
Confidence 67777777777776653 3344556667777777776654322211 23444455555566777777777
Q ss_pred HHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC
Q 006744 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS 410 (632)
Q Consensus 331 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 410 (632)
|++.... --..+. ++. .+....+++.+.+ .+..++.+....+...|+++.|+.+|...++
T Consensus 881 yEK~~~h----afev~r-mL~-----e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 881 YEKAGVH----AFEVFR-MLK-----EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHhcCCh----HHHHHH-HHH-----hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 7754211 111111 111 1222222222322 2456777777777888999999999987654
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 006744 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490 (632)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 490 (632)
|-.++...|-+|+.++|-++-++- -|......+.+.|...|++.+|..+|.+... +...|+
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIR 1001 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIR 1001 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHH
Confidence 778888889999999998887643 3566677788889999999999998877653 222222
Q ss_pred HHH-------------hc--CCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH--------HH--
Q 006744 491 GLC-------------KI--GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE--------MT-- 545 (632)
Q Consensus 491 ~~~-------------~~--g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~--------m~-- 545 (632)
.|- .. .+.-.|-++|++.- . .+...+..|-+.|.+.+|+++-=+ ++
T Consensus 1002 lcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g----~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 1002 LCKENDMKDRLANLALMSGGSDLVSAARYYEELG----G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred HHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc----h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence 221 11 22333444554421 0 011233445566666666654211 11
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 546 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 581 (632)
+..-..|+...+.-.+-++...++++|..++-..++
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 112234666777777777777788888777765543
No 100
>PLN02789 farnesyltranstransferase
Probab=98.79 E-value=7.8e-06 Score=78.30 Aligned_cols=202 Identities=12% Similarity=-0.035 Sum_probs=128.4
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCCh--hHHH
Q 006744 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER-NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV--VRGH 258 (632)
Q Consensus 182 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~a~ 258 (632)
++.++|+.+.+++.+.... +..+|+..-..+...| +++++++.++++.+.+ +-+..+|+.....+.+.|+. ++++
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence 3555666666666654322 4556776666666777 5788999988888764 34556677665555566653 6778
Q ss_pred HHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc---CCH----HHHHHHH
Q 006744 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV---KQF----DKAYKLF 331 (632)
Q Consensus 259 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~----~~A~~~~ 331 (632)
++++++.+.+.. |..+|+...-++...|+++++++.++++++.++. |..+|+.....+.+. |.. ++.+.+.
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 888888887665 7788888888888888899999999998887765 677777766555444 222 4566666
Q ss_pred HHHHhCCCCCCHhcHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCccccHHHHHHHHhh
Q 006744 332 EVTVQDDLAPDFSTVNPLLVCCAEM----GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG 389 (632)
Q Consensus 332 ~~m~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (632)
.++...... |...|+.+...+... +...+|...+.+..+.++. +......++..|+
T Consensus 207 ~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~ 266 (320)
T PLN02789 207 IDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLC 266 (320)
T ss_pred HHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHH
Confidence 566654332 556666666665552 2334455555555443322 3344555555554
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=0.00032 Score=73.40 Aligned_cols=398 Identities=15% Similarity=0.155 Sum_probs=248.7
Q ss_pred CCChHHHHHHHhcCCChhHHHHHHHHhhhc-CCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcC------------
Q 006744 116 RVTPDLVAEVLKVENNPTLASKFFHWAGKQ-KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG------------ 182 (632)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g------------ 182 (632)
+.++++-..||...+-++. ++.++.... ..-..|+...+..+.++...+...+-+++++.+.-..
T Consensus 949 R~D~~LW~~VL~e~n~~rR--qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnL 1026 (1666)
T KOG0985|consen 949 RSDPDLWAKVLNEENPYRR--QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNL 1026 (1666)
T ss_pred ccChHHHHHHHhccChHHH--HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhh
Confidence 4455566666655543322 222222211 1113455566667888888888888888887766322
Q ss_pred --------CHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCCh
Q 006744 183 --------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254 (632)
Q Consensus 183 --------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 254 (632)
+..+..+..+++-.... | .+...+..++-+++|..+|++.. .+..+.+.||.- -+.+
T Consensus 1027 LiLtAikad~trVm~YI~rLdnyDa-~------~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~l 1091 (1666)
T KOG0985|consen 1027 LILTAIKADRTRVMEYINRLDNYDA-P------DIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSL 1091 (1666)
T ss_pred HHHHHhhcChHHHHHHHHHhccCCc-h------hHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhH
Confidence 22333333333332211 1 23344556677788888887653 455555555542 2566
Q ss_pred hHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006744 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334 (632)
Q Consensus 255 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 334 (632)
++|.+.-++.. ...+|..+..+-.+.|.+.+|++-|-+.. |...|..+++...+.|.+++-.+++...
T Consensus 1092 dRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1092 DRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred HHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 67766655432 45678888888888888888888775432 6677888899999999999999888877
Q ss_pred HhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhH
Q 006744 335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI 414 (632)
Q Consensus 335 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 414 (632)
.+....|... +.++-+|++.++..+.++++. .|+..-...+..-|...|.++.|.-+|.. +.-
T Consensus 1160 Rkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN 1222 (1666)
T KOG0985|consen 1160 RKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSN 1222 (1666)
T ss_pred HHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhh
Confidence 7766666544 467788888888776655542 24455555566667777888888777764 344
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 006744 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494 (632)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 494 (632)
|..|...+...|++..|...-++. .+..||-.+-.+|...+.+..|. |-...+.....-..-|+..|-.
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQD 1291 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHh
Confidence 888889999999998887655433 35678888888888777665442 2222333445567788999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCC------CCHHHHHHHHHHHHhcC
Q 006744 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE-GCP------PNEVICSAIISGMCKHG 567 (632)
Q Consensus 495 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~------p~~~~~~~l~~~~~~~g 567 (632)
.|-+++-+.+++..+.. .....-.|+-|...|.+- ++++..+.++-.-.+ +++ .....|..++-.|.+-.
T Consensus 1292 rGyFeElIsl~Ea~LGL--ERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGLGL--ERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred cCcHHHHHHHHHhhhch--hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999875532 112333466566666554 333333333322211 111 12446777777777777
Q ss_pred CHHHHH
Q 006744 568 TLEEAR 573 (632)
Q Consensus 568 ~~~~A~ 573 (632)
.++.|.
T Consensus 1369 eyDNAa 1374 (1666)
T KOG0985|consen 1369 EYDNAA 1374 (1666)
T ss_pred hhhHHH
Confidence 777664
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=1.9e-06 Score=76.96 Aligned_cols=334 Identities=13% Similarity=0.079 Sum_probs=212.4
Q ss_pred CCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 006744 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312 (632)
Q Consensus 233 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 312 (632)
|+....--+.+++..+.+..+++.|++++..-.+...+ +....+.|..+|....++..|-..++++-... |...-|.
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYr 81 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYR 81 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHH
Confidence 33333445677888889999999999999988887554 77788899999999999999999999998753 4444443
Q ss_pred H-HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhh
Q 006744 313 S-IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC--CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG 389 (632)
Q Consensus 313 ~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (632)
. -...+.+.+.+.+|+.+...|... ++...-..-+.+ ....+++..+..++++.-..+ +.....-..-...
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gClly 155 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheee
Confidence 2 245677889999999999888753 222221112222 235677888888877765322 2333333334456
Q ss_pred hcccHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-------------cCHH-------
Q 006744 390 KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE-------------VNSL------- 448 (632)
Q Consensus 390 ~~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------------p~~~------- 448 (632)
+.|+++.|.+-|....+-+.- +...||..+.. .+.|+++.|+++..++++.|++ ||..
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence 899999999999988775544 67778766554 4678899999999999988764 2211
Q ss_pred -HHHHHHH-------HHHHcCCHHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHH
Q 006744 449 -SFSIAIQ-------CHVESGDILEACECHNKIIEM-SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519 (632)
Q Consensus 449 -t~~~ll~-------~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 519 (632)
.-+.++. .+.+.|+.+.|.+.+..|--. ....|+.|...+.-. ...|++.+..+-++-+++..+ -...
T Consensus 235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP--fP~E 311 (459)
T KOG4340|consen 235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP--FPPE 311 (459)
T ss_pred HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC--CChH
Confidence 1122222 245667888887777766522 223455555433221 123444444444444454433 2345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 006744 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCP-PNEVICSAIISGMCK-HGTLEEARKVFTNLR 580 (632)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~ 580 (632)
||..++..||++.-++.|.+++.+-....++ .+...| .|++++.- .-..++|.+-++.+.
T Consensus 312 TFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6777888888888888888887663332211 223333 34444443 455667766665553
No 103
>PLN02789 farnesyltranstransferase
Probab=98.77 E-value=1.1e-05 Score=77.17 Aligned_cols=145 Identities=8% Similarity=0.042 Sum_probs=108.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh
Q 006744 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG-RVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285 (632)
Q Consensus 207 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 285 (632)
..+-..+...+..++|+.+++++++.. +-+..+|+..-.++...| ++++++..++++.+.+.+ +..+|+.....+.+
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~ 118 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHH
Confidence 334444556788999999999998764 234456766666667777 679999999999987665 66677766656666
Q ss_pred cCC--HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHh
Q 006744 286 EGK--VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355 (632)
Q Consensus 286 ~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 355 (632)
.|. .++++.+++++.+...+ +..+|+...-++.+.|+++++++.++++.+.+.. |...|+.....+.+
T Consensus 119 l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~ 188 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITR 188 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHh
Confidence 665 36788899899987765 8889999999999999999999999999987755 55566555444433
No 104
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.77 E-value=9e-05 Score=74.63 Aligned_cols=50 Identities=10% Similarity=0.009 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006744 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507 (632)
Q Consensus 449 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 507 (632)
|-..+..-+...|++..|.+-|-+.-+ |.+-+++|-..+.|++|.++-+.
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc
Confidence 344455556667777777766654432 55666777777777777776653
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.76 E-value=0.0001 Score=67.67 Aligned_cols=313 Identities=11% Similarity=0.057 Sum_probs=163.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHH---HHHHHhcCChhHHHHHHHHHHHcCCcccHHh-HHH
Q 006744 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL---IMGLCKGGRVVRGHELFREMKENGILIDRAI-YGV 278 (632)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ 278 (632)
+.-.--+...+...|++..|+.-|....+. |...|.++ ...|...|+-..|+.=+....+. +||-.. -..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 333444555666666666666666666543 22233322 34455566666666666666553 333221 111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCC
Q 006744 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358 (632)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 358 (632)
-...+.+.|.+++|..=|+.+.+....-+. ...++.+.-..++-.. ....+..+...|+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHWV----------------LVQQLKSASGSGD 170 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCc
Confidence 223455666666666666666654321110 0111111111111111 1112223334455
Q ss_pred hhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHH
Q 006744 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM 438 (632)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 438 (632)
...|+..+..+++.. +.+..++..-..+|...|++..|+.-++...+....++..+--+-..+...|+.+.++...++.
T Consensus 171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 555555555555532 2355555555566666666666666555555554445555555556666666666666666665
Q ss_pred hhCCCCcCHHHHHH----H---------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---hHHHHHHHHHhcCCHHHHH
Q 006744 439 RGLNLEVNSLSFSI----A---------IQCHVESGDILEACECHNKIIEMSQVPSVA---AYNCLTKGLCKIGEIDAAM 502 (632)
Q Consensus 439 ~~~~~~p~~~t~~~----l---------l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~ 502 (632)
.+ +.||...+-. + +......+++.++.+-.+...+....-... .+..+-.++...|++.+|+
T Consensus 250 LK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 250 LK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred Hc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHH
Confidence 54 3444432111 1 112234556666666666666654331222 2334455666777788888
Q ss_pred HHHHHHhhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006744 503 MLVRDCLGNVASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548 (632)
Q Consensus 503 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 548 (632)
+...++++. .|+ +.++.--..+|.-...++.|+.-|+.+.+.+
T Consensus 328 qqC~evL~~---d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 328 QQCKEVLDI---DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHhc---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 877777643 343 5566666677777777778877777777664
No 106
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.73 E-value=5e-05 Score=69.61 Aligned_cols=298 Identities=15% Similarity=0.098 Sum_probs=184.8
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCCCHHHHHHH---HHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 006744 127 KVENNPTLASKFFHWAGKQKGYKHNFASYNAL---AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV 203 (632)
Q Consensus 127 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 203 (632)
-..++...|+..||.+.. -|+..|.++ ...|...|+-..|..=+....+ .+||-
T Consensus 49 la~~Q~sDALt~yHaAve-----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle------------------lKpDF 105 (504)
T KOG0624|consen 49 LARGQLSDALTHYHAAVE-----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE------------------LKPDF 105 (504)
T ss_pred HHhhhHHHHHHHHHHHHc-----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh------------------cCccH
Confidence 345577888999988754 344444443 4556666655555444433332 34554
Q ss_pred Hh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHH----------------hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744 204 FA-YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM----------------AYVTLIMGLCKGGRVVRGHELFREMKE 266 (632)
Q Consensus 204 ~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----------------~~~~li~~~~~~g~~~~a~~~~~~m~~ 266 (632)
.. --.-...+.+.|.+++|..=|+.+++.. |+.. .....+..+...|+...|++....+.+
T Consensus 106 ~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 106 MAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred HHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 32 1222345778999999999999988763 3211 112234455667888888888888888
Q ss_pred cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcH
Q 006744 267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346 (632)
Q Consensus 267 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 346 (632)
..+- |...|..-..+|...|++..|+.=++...+..-. +...+..+-..+...|+.+.++...++.++. .||...+
T Consensus 184 i~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~C 259 (504)
T KOG0624|consen 184 IQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLC 259 (504)
T ss_pred cCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhH
Confidence 6544 7778888888888888888888777766655433 4555556677778888888888888887754 4444322
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC-C---hhHHHHHHHHH
Q 006744 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-S---VPIYNILMGAL 422 (632)
Q Consensus 347 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~---~~~~~~li~~~ 422 (632)
... | ..+.+..+.++.|.+ ....+++.++.+..+.+.+..+. . ...+..+-.++
T Consensus 260 f~~---Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 260 FPF---Y---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHH---H---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc
Confidence 111 1 111222222222222 23346666677777766665544 2 22344455666
Q ss_pred HhcCChhhHHHHHHHHhhCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006744 423 LEIGEVKKALYLFGKMRGLNLEVN-SLSFSIAIQCHVESGDILEACECHNKIIEMS 477 (632)
Q Consensus 423 ~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 477 (632)
...|++.+|++.-.+..+. .|| ..++.--..+|.-...++.|+.-|+...+.+
T Consensus 318 ~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred cccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 6677777787777777663 343 6677777777777777888888887777654
No 107
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.71 E-value=0.00022 Score=74.59 Aligned_cols=437 Identities=12% Similarity=0.020 Sum_probs=223.4
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH--------------------h
Q 006744 121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD--------------------S 180 (632)
Q Consensus 121 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~--------------------~ 180 (632)
.+..+++...+...|.+.|+.+..-. .-+...+..+...|++...++.|..+.-... +
T Consensus 497 ~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe 574 (1238)
T KOG1127|consen 497 FLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE 574 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccC
Confidence 34455555556778888888775532 3456677888889999999988887733221 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHH--HHHHHhcCChhHHH
Q 006744 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL--IMGLCKGGRVVRGH 258 (632)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--i~~~~~~g~~~~a~ 258 (632)
.++..+|+.-|+...+..++ |...|..+..+|.+.|.+..|+++|.+.... .|+. +|... ...-+..|.+.+|+
T Consensus 575 a~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred ccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHH
Confidence 34677778888777766443 7778888888888888888888888877654 3432 22222 22335668888888
Q ss_pred HHHHHHHHc------CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCCHhhHHHHHHHHHccCCHH
Q 006744 259 ELFREMKEN------GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD-------SGYRADLGIYNSIIGGLCRVKQFD 325 (632)
Q Consensus 259 ~~~~~m~~~------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g~~~ 325 (632)
..+..+... +..--..++-.+...+.-.|-..++.++++.-++ ....-+...|-.+-++
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda-------- 722 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA-------- 722 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH--------
Confidence 888776542 1111122333333333334444444444443332 1111122223222222
Q ss_pred HHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCCh---h---HHHHHHHHHHHCCCCccccHHHHHHHHhh-----h--cc
Q 006744 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM---D---NFFKLLAQMEKLKFSVAADLEKFFEFLVG-----K--EE 392 (632)
Q Consensus 326 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~--~g 392 (632)
..+|-... .. .|+.....++..-.-..+.. | .+.+.+-.-.+.-. .....++..+..|. . ..
T Consensus 723 --c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f~~l~et~~ 797 (1238)
T KOG1127|consen 723 --CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYFLLLGETMK 797 (1238)
T ss_pred --HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHHHHcCCcch
Confidence 12222111 01 11211111111111111111 1 00011100000000 01122232222221 1 12
Q ss_pred cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006744 393 RIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472 (632)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 472 (632)
+...|...+....+....+...||.|... ...|.+.-|.-.|-+-.... +-...+|..+.-.+.+..+++.|...|..
T Consensus 798 ~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 798 DACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHh
Confidence 23456666666666555567777777665 44566666666665544432 44556666666677777888888888877
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH--Hhhc-CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Q 006744 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD--CLGN-VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ--- 546 (632)
Q Consensus 473 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--- 546 (632)
.....+ .+...|-.........|+.-++..+|.. .... .+..++...|-....-...+|+.++-+...+.+-.
T Consensus 876 ~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 876 VQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred hhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 765331 2344454444444566777777777765 2211 12223333333333333344555444443332221
Q ss_pred ------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744 547 ------EGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579 (632)
Q Consensus 547 ------~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 579 (632)
.|.+.+...|...+...-+.+.+++|.+...++
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 134555666777766666677776666665554
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=3.7e-06 Score=82.41 Aligned_cols=224 Identities=13% Similarity=0.067 Sum_probs=144.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChh
Q 006744 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360 (632)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 360 (632)
.-+.+.|++.+|.-.|+..++..+. +...|-.|......+++-..|+..+++..+.+.. +......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 3456889999999999999998766 8889999999999999999999999999876533 5666777778888889888
Q ss_pred HHHHHHHHHHHCCCCccccHHH------HHHHHhhhcccHHHHHHHHHHHHhCCC--CChhHHHHHHHHHHhcCChhhHH
Q 006744 361 NFFKLLAQMEKLKFSVAADLEK------FFEFLVGKEERIMMALDVFEELKGKGY--SSVPIYNILMGALLEIGEVKKAL 432 (632)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~ 432 (632)
.|...++.-+...++-...... ..-........+.+..++|-++..... .+..+...|.-.|.-.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999998876654321000000 000011112223444455555444333 36666777777777777777777
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS-VAAYNCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 433 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
..|+...... +-|...||.|...++...+.++|...|.+.++. +|. +.+.--|.-.|...|.+++|.+.|-.++
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777766632 334455666666666666677777777776663 343 2222334445666666776666665544
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.70 E-value=0.00042 Score=67.74 Aligned_cols=446 Identities=10% Similarity=0.048 Sum_probs=252.1
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 006744 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228 (632)
Q Consensus 149 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 228 (632)
+-|..+|+.||+-+... ..+++++.++++ ... .+-....|..-|..-.+.++++....+|.+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~----------------~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~R 78 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQL----------------VNV-FPSSPRAWKLYIERELASKDFESVEKLFSR 78 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHH----------------hcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 56889999999887766 565555555444 332 233567899999999999999999999998
Q ss_pred HHhCCCCcCHHhHHHHHHHHHhc-CChhHH----HHHHHHH-HHcCCcc-cHHhHHHHHHH---------HHhcCCHHHH
Q 006744 229 MKKDLVEADVMAYVTLIMGLCKG-GRVVRG----HELFREM-KENGILI-DRAIYGVLIEG---------LVGEGKVGKA 292 (632)
Q Consensus 229 m~~~~~~p~~~~~~~li~~~~~~-g~~~~a----~~~~~~m-~~~~~~p-~~~~~~~li~~---------~~~~g~~~~a 292 (632)
.+.. ..+...|..-|.--.+. |+...+ .+.|+-. .+.|..+ +-..|+..+.. |....+++..
T Consensus 79 CLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~v 156 (656)
T KOG1914|consen 79 CLVK--VLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAV 156 (656)
T ss_pred HHHH--HhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHH
Confidence 7765 34566666666544333 333332 2233332 3344332 22344444433 2334456777
Q ss_pred HHHHHHHHHCCCCC------CHhhHHHHHHHHH-------ccCCHHHHHHHHHHHHh--CCCCCCHhc------------
Q 006744 293 CDLLKDLVDSGYRA------DLGIYNSIIGGLC-------RVKQFDKAYKLFEVTVQ--DDLAPDFST------------ 345 (632)
Q Consensus 293 ~~~~~~m~~~g~~~------~~~~~~~li~~~~-------~~g~~~~A~~~~~~m~~--~~~~p~~~~------------ 345 (632)
.++|+++...-+.- |-..|..=|+... +...+..|.++++++.. .|+.-+..+
T Consensus 157 RriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~q 236 (656)
T KOG1914|consen 157 RRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQ 236 (656)
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHH
Confidence 77888877542110 1122222222111 23456677777777653 343322222
Q ss_pred ---HHHHHHHHHhcCCh--------hHHHHHHHHH-HHCCCCccccH-----HHHHHHHhhhccc-------HHHHHHHH
Q 006744 346 ---VNPLLVCCAEMGRM--------DNFFKLLAQM-EKLKFSVAADL-----EKFFEFLVGKEER-------IMMALDVF 401 (632)
Q Consensus 346 ---~~~ll~~~~~~~~~--------~~a~~~~~~~-~~~~~~~~~~~-----~~~l~~~~~~~g~-------~~~a~~~~ 401 (632)
|..+|.-=...+-- ....-.+++. .-.+..|+... .......+...|+ -+++..++
T Consensus 237 v~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~y 316 (656)
T KOG1914|consen 237 VELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIY 316 (656)
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHH
Confidence 22222211111100 0011111111 11122211111 0011112222333 33455555
Q ss_pred HHHHhCCCC-ChhHHHHHHHHHHhc---CChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006744 402 EELKGKGYS-SVPIYNILMGALLEI---GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477 (632)
Q Consensus 402 ~~~~~~~~~-~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 477 (632)
+...+.-.. +...|..+.+.--.. .+.+....+++++...-..--..+|...++...+...+..|..+|.++.+.+
T Consensus 317 Er~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~ 396 (656)
T KOG1914|consen 317 ERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK 396 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc
Confidence 544332211 222333332211111 1355566667666654322234578888888889999999999999999987
Q ss_pred CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HH
Q 006744 478 QVP-SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN--EV 554 (632)
Q Consensus 478 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~ 554 (632)
..+ ++.++++++..||. ++.+-|.++|+--+...+..|. --...++-+...++-..+..+|++....++.++ ..
T Consensus 397 r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~--yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~ 473 (656)
T KOG1914|consen 397 RTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPE--YVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKE 473 (656)
T ss_pred CCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChH--HHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHH
Confidence 777 78888999998775 6889999999987766554443 223456667788999999999999998866655 46
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCCCChhhHHHHHHHHhhhchhHHHHhhhhhhchh
Q 006744 555 ICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLE 619 (632)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~v~~~l~~~~~~ 619 (632)
+|..+++-=..-|++..+.++-+++...=. .+. .-.-..++.-++-.+....-...+++.|..
T Consensus 474 Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~--~~~~~~~v~RY~~~d~~~c~~~elk~l~~~ 539 (656)
T KOG1914|consen 474 IWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYE--GNETALFVDRYGILDLYPCSLDELKFLGYK 539 (656)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCC--CChHHHHHHHHhhcccccccHHHHHhhhHH
Confidence 899999988999999999999888765421 111 111223344455555555555556655555
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=4.8e-06 Score=83.78 Aligned_cols=234 Identities=13% Similarity=0.064 Sum_probs=186.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHH
Q 006744 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA 354 (632)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 354 (632)
.-..+...+.+.|-...|..+|+++. .|..+|.+|+..|+..+|..+..+..+ -.||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 34567788899999999999998764 577889999999999999999988877 3678888888888877
Q ss_pred hcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHH
Q 006744 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYL 434 (632)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 434 (632)
...-+++|.++.++.... ....+.......++++++.+.|+.-.+.++-...+|-.+..+..+.++++.|.+.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 777788888888765432 1122222234479999999999999888877888999999999999999999999
Q ss_pred HHHHhhCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006744 435 FGKMRGLNLEVN-SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513 (632)
Q Consensus 435 ~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 513 (632)
|...... .|| ...|+.+-.+|.+.++..+|...+++..+.+ .-+..+|...+....+.|.+++|++.+.++.....
T Consensus 542 F~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 542 FHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 9988874 555 5679999999999999999999999999987 44566777777888999999999999999876544
Q ss_pred CCChHHHHHHHHHHHH
Q 006744 514 SGPTEFKYALTILHVC 529 (632)
Q Consensus 514 ~~p~~~~~~~l~~~~~ 529 (632)
...|......++....
T Consensus 619 ~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 619 KYKDDEVLLIIVRTVL 634 (777)
T ss_pred hcccchhhHHHHHHHH
Confidence 4445444444444443
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.69 E-value=7.6e-06 Score=87.92 Aligned_cols=215 Identities=14% Similarity=0.064 Sum_probs=167.8
Q ss_pred HHHHHHHhhhcccHHHHHHHHHHHHhC-CCC----ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHH
Q 006744 381 EKFFEFLVGKEERIMMALDVFEELKGK-GYS----SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455 (632)
Q Consensus 381 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 455 (632)
+-.++......++++.|++++++.... ++. -..+|.++++.-...|.-+...++|+++.+. .-....|..|..
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLG 1538 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 333444456677888888888876543 111 3457888888888888888999999999874 233556888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHH
Q 006744 456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535 (632)
Q Consensus 456 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 535 (632)
.|.+.+..++|.++++.|.+.- .-....|...+..+.+..+-++|..++++++...+..--.....-.+..-.+.|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 9999999999999999999853 356788999999999999999999999999876443223333444555566889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHH
Q 006744 536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599 (632)
Q Consensus 536 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~ 599 (632)
.+..+|+..... .+.....|+.+++.-.++|+.+.++.+|++....++.+.---..|..-+..
T Consensus 1618 RGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred hhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 999999999887 466788999999999999999999999999999999875555555554443
No 112
>PF12854 PPR_1: PPR repeat
Probab=98.69 E-value=2.4e-08 Score=59.46 Aligned_cols=32 Identities=28% Similarity=0.642 Sum_probs=20.4
Q ss_pred CCCcCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 006744 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229 (632)
Q Consensus 198 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 229 (632)
|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666665
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.64 E-value=1.8e-05 Score=85.13 Aligned_cols=207 Identities=10% Similarity=0.048 Sum_probs=158.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCcc---cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 006744 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKEN-GILI---DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312 (632)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 312 (632)
....|-..|......+++++|.+++++.... ++.- -...|.++++.-...|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4556777777788888888888888887653 1111 12367777777777788888888888887751 1345678
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-ccccHHHHHHHHhhhc
Q 006744 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS-VAADLEKFFEFLVGKE 391 (632)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 391 (632)
.|...|.+.+.+++|.++|+.|.+.-- -....|...+..+.+.++-+.|..++.+.++.-.. -...+..-.+.+-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 888888888999999999998887522 35567888888888888888888888888775432 1233455556666788
Q ss_pred ccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcC
Q 006744 392 ERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446 (632)
Q Consensus 392 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 446 (632)
|+.+.+..+|+......+.-...|+..|+.-.++|+.+.+..+|++....++.|-
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 9999999999999888877788899999999999999999999999998876654
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=4.5e-08 Score=58.34 Aligned_cols=33 Identities=36% Similarity=0.878 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744 548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580 (632)
Q Consensus 548 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 580 (632)
|+.||..||+.||.+|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677777777778777778888877777777763
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.57 E-value=1.2e-05 Score=74.76 Aligned_cols=181 Identities=14% Similarity=0.045 Sum_probs=102.5
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHhCCCCCh---hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH----HHHH
Q 006744 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSV---PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL----SFSI 452 (632)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ 452 (632)
........+...|++++|...|+++....+.+. .++..+..++...|++++|...++++.+.. |+.. ++..
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~ 112 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHHHHH
Confidence 344444445566666666666666665544322 345556666666666666666666665532 2111 2333
Q ss_pred HHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHH
Q 006744 453 AIQCHVES--------GDILEACECHNKIIEMSQVPSV-AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL 523 (632)
Q Consensus 453 ll~~~~~~--------g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 523 (632)
+..++... |+.++|.+.++.+.+.. |+. ..+..+..... ..... . .....
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~---~------------~~~~~ 171 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL---A------------GKELY 171 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH---H------------HHHHH
Confidence 33333332 45555666666655532 221 11111111000 00000 0 00113
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 524 TILHVCRSGEAEKIIEVLNEMTQEG--CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 524 l~~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
+...+.+.|++++|+..+++..+.. -+.....+..++.++.+.|++++|..+++.+....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5566788899999999999988762 12235688899999999999999999998887653
No 116
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.55 E-value=0.00059 Score=71.59 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006744 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543 (632)
Q Consensus 464 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 543 (632)
..|...+.+.++.. ..+..+|+.|.-. ...|++.-|.-.|-+.... ......+|..+...+....+++-|...|..
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhheeccceeEEecccHHHhhHHHHh
Confidence 45666666666532 2345556655443 5556666666655443322 223445566666666777788888888877
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006744 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN 578 (632)
Q Consensus 544 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 578 (632)
.+... +.|...|-.........|+.-++..+|..
T Consensus 876 ~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 876 VQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 77663 55666666655555566777777777766
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.55 E-value=2.8e-05 Score=83.04 Aligned_cols=57 Identities=18% Similarity=0.070 Sum_probs=28.1
Q ss_pred HHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHh
Q 006744 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439 (632)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 439 (632)
..+..+|.+.|+.++|..+++++.+.++.++.+.|.+...|... ++++|.+++.+..
T Consensus 120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 120 RTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 33444444444444444444444444444555555555555555 5555555554443
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.54 E-value=1.3e-05 Score=71.14 Aligned_cols=132 Identities=17% Similarity=0.061 Sum_probs=110.0
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280 (632)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 280 (632)
.|....+.++....+.|++..|+..|++..... ++|...|+.+.-+|.+.|++++|..-|.+..+.... +...++.|.
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlg 175 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLG 175 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHH
Confidence 356667778888899999999999999988764 678899999999999999999999999998886444 677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006744 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335 (632)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 335 (632)
..|.-.|+.+.|..++......+.. |..+-..+.......|++++|.++...-.
T Consensus 176 ms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 176 MSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 8888899999999999888877654 67777788888889999999988876544
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.51 E-value=2.5e-05 Score=69.59 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=88.8
Q ss_pred cccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHH-HHcCC--HHHHH
Q 006744 391 EERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH-VESGD--ILEAC 467 (632)
Q Consensus 391 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~-~~~g~--~~~a~ 467 (632)
.++.+++...++.....++.+...|..+...|...|++++|...|++..+.. +-+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4666777777888777777788888888888888888888888888888754 33555566666653 56666 47888
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006744 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512 (632)
Q Consensus 468 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 512 (632)
+++++..+... -+...+..+...+...|++++|+..|+++++..
T Consensus 131 ~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 131 EMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 88888887653 256677777777788888888888888877653
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=3.8e-05 Score=68.42 Aligned_cols=118 Identities=8% Similarity=0.088 Sum_probs=56.6
Q ss_pred cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHH-HhcCC--HHHH
Q 006744 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL-VGEGK--VGKA 292 (632)
Q Consensus 216 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~a 292 (632)
.++.+++...++...+.+ +.|...|..+...|...|++++|...|++..+.... +..++..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 334444444444444332 334445555555555555555555555555544332 444444444432 34444 2555
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006744 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336 (632)
Q Consensus 293 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (632)
.+++++..+.+.. +..++..+...+.+.|++++|+..|+++.+
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555554433 444455555555555555555555555544
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.48 E-value=2.7e-05 Score=72.41 Aligned_cols=186 Identities=11% Similarity=-0.003 Sum_probs=133.6
Q ss_pred CHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc--cccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChh---HHH
Q 006744 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV--AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYN 416 (632)
Q Consensus 342 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~ 416 (632)
....+..+...+...|+++.|...++++.+..... .......+..++...|++++|...++++.+..+.+.. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 45567778888999999999999999998765431 1234566778889999999999999999988766443 466
Q ss_pred HHHHHHHhc--------CChhhHHHHHHHHhhCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 006744 417 ILMGALLEI--------GEVKKALYLFGKMRGLNLEVNSL-SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC 487 (632)
Q Consensus 417 ~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 487 (632)
.+..++... |+.++|.+.|+.+... .|+.. ....+... .. ... ... .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~------~~~--------~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRN------RLA--------GKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHH------HHH--------HHHHH
Confidence 666666654 7889999999999875 34432 22211111 00 000 000 11224
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744 488 LTKGLCKIGEIDAAMMLVRDCLGNVASGP-TEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547 (632)
Q Consensus 488 li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 547 (632)
+...+.+.|++++|+..+++.++..+..| ....+..+..++...|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66778899999999999999987765544 3456778999999999999999999888765
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=4.3e-05 Score=77.19 Aligned_cols=193 Identities=11% Similarity=0.018 Sum_probs=125.5
Q ss_pred CccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHH
Q 006744 375 SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454 (632)
Q Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 454 (632)
+|-......+...+.+.|-...|..+|+++. .|..+|.+|+..|+..+|..+..+..+ -+||..-|..+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 4555566777888899999999999999654 488899999999999999999888877 378888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCH
Q 006744 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534 (632)
Q Consensus 455 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 534 (632)
+.....--+++|+++.+..... .-..+.....+.++++++.+.|+.-++..... ..+|-.+..++.+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq--~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQ--LGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccc--hhHHHhccHHHHHHhhh
Confidence 8776666677777777655432 11122222233566666666666555433222 22444444455555666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006744 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587 (632)
Q Consensus 535 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 587 (632)
+.|.+.|...+... +-+...|+.+-.+|.+.|+..+|...+++..+-+..++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW 587 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC
Confidence 66666666655542 33445566666666666666666666666666554443
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.45 E-value=0.00011 Score=78.76 Aligned_cols=232 Identities=13% Similarity=0.050 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHHHhCCChhHHhHHHHHHHhcC------CHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHH
Q 006744 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQG------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLR 224 (632)
Q Consensus 151 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 224 (632)
+...+..|+..+...+++++|.++.+...+.. .+-.+. ++....+ ..+.... .++.......++..+..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~-l~~q~~~---~~~~~lv-~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI-LSLSRRP---LNDSNLL-NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH-HHHhhcc---hhhhhhh-hhhhhcccccchhHHHH
Confidence 34456666666666666666666655433211 111111 1111111 1111111 44444445555555555
Q ss_pred HHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304 (632)
Q Consensus 225 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 304 (632)
++..|.+.+ -+...+-.+..+|-+.|+.++|..+++++.+.... |..+.|.+...|... ++++|.+++.+.+..
T Consensus 105 ~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-- 178 (906)
T PRK14720 105 ICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR-- 178 (906)
T ss_pred HHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--
Confidence 555555532 34456677777777888888888888888777644 777778888777777 788887777766543
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCccccHHHH
Q 006744 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL-KFSVAADLEKF 383 (632)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ 383 (632)
|...+++.++.++|.++...... +...+..+ .+.+... |..-...++..
T Consensus 179 -------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i----------------~~ki~~~~~~~~~~~~~~~ 228 (906)
T PRK14720 179 -------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRI----------------ERKVLGHREFTRLVGLLED 228 (906)
T ss_pred -------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHH----------------HHHHHhhhccchhHHHHHH
Confidence 55666777777777777754322 22122222 2222221 22222233444
Q ss_pred HHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 006744 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALL 423 (632)
Q Consensus 384 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 423 (632)
+...|...++++++..+++.+.+....|.....-++.+|.
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 4555677788888888888888887777777777777776
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=0.00035 Score=67.75 Aligned_cols=146 Identities=17% Similarity=0.116 Sum_probs=97.0
Q ss_pred hhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcC-HHHHHHHHHHHHHcCCHHHH
Q 006744 388 VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN-SLSFSIAIQCHVESGDILEA 466 (632)
Q Consensus 388 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a 466 (632)
+...|..++|+..+..+....+.|+..+......+.+.|+.++|.+.++.+... .|+ ......+.+++.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 345577777777777777776667777777777777777777777777777764 454 34445556677777777777
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546 (632)
Q Consensus 467 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 546 (632)
..+++...... +-|+..|..|..+|...|+..+|..-..+ ++...|+++.|+..+....+
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE-------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHhCCCHHHHHHHHHHHHH
Confidence 77777766543 34567777777777777777766554433 34556777777777777666
Q ss_pred CCCCCCHHHH
Q 006744 547 EGCPPNEVIC 556 (632)
Q Consensus 547 ~g~~p~~~~~ 556 (632)
.. +.+..+|
T Consensus 454 ~~-~~~~~~~ 462 (484)
T COG4783 454 QV-KLGFPDW 462 (484)
T ss_pred hc-cCCcHHH
Confidence 52 4444444
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00032 Score=62.43 Aligned_cols=116 Identities=14% Similarity=0.146 Sum_probs=61.9
Q ss_pred hcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHH
Q 006744 390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLE----IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE 465 (632)
Q Consensus 390 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 465 (632)
+..+++-|++.+++|.+.+ +..+.+.|..++.+ .+++.+|.-+|++|.++ ..|+..+.+-...++...|++++
T Consensus 149 k~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 3344444444444444332 34444444444443 34566777777777654 46677777777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH-HHHHHHHHh
Q 006744 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA-AMMLVRDCL 509 (632)
Q Consensus 466 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~ 509 (632)
|..+++....... .++.+...+|.+-...|.-.+ ..+.+.+..
T Consensus 226 Ae~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 226 AESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 7777777766542 234444444444444444332 333444433
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.40 E-value=6.8e-05 Score=66.60 Aligned_cols=157 Identities=13% Similarity=0.050 Sum_probs=80.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCC
Q 006744 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358 (632)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 358 (632)
+-..+...|+-+....+.......... |....+..+....+.|++.+|+..|.+..... .+|...|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 334444455555555444443332111 33344445555555566666666555554432 3355555555555555555
Q ss_pred hhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHH
Q 006744 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM 438 (632)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 438 (632)
++.|..-|.+..+.... ++...+-+...|.-.|+.+.|+.++.........+..+-..+.......|++++|..+...-
T Consensus 150 ~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 150 FDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 55555555555544332 22333333333444455555555555555554445556666666666666666666655443
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.38 E-value=9.9e-05 Score=78.22 Aligned_cols=119 Identities=14% Similarity=0.101 Sum_probs=54.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHH
Q 006744 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259 (632)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 259 (632)
+.|++++|..+++...+..+. +......+...+.+.+++++|+..+++..... +-+......+..++.+.|++++|..
T Consensus 98 ~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred HcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHH
Confidence 344555555555554443211 23344444444455555555555555544432 1223333444444444455555555
Q ss_pred HHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301 (632)
Q Consensus 260 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (632)
+|+++...+.. +..++..+..++.+.|+.++|...|+...+
T Consensus 176 ~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 176 CFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55554442221 344444444455555555555555554443
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.35 E-value=4.4e-05 Score=64.24 Aligned_cols=96 Identities=8% Similarity=-0.137 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh
Q 006744 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285 (632)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 285 (632)
+..+...+...|++++|.+.|+...... +.+...|..+..++...|++++|...|+...+.+.. +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 4455666777777777777777777654 346677777777777777777777777777776543 66777777777777
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 006744 286 EGKVGKACDLLKDLVDSG 303 (632)
Q Consensus 286 ~g~~~~a~~~~~~m~~~g 303 (632)
.|+.++|...|+...+..
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 777777777777777654
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=0.00077 Score=65.44 Aligned_cols=139 Identities=13% Similarity=0.057 Sum_probs=77.5
Q ss_pred HhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 006744 249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328 (632)
Q Consensus 249 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 328 (632)
...|++++|+..++.+.+.-. -|........+.+.+.|+.++|.+.++.+....+. ....+-.+..+|.+.|++.+|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHH
Confidence 344666666666666655422 24445555556666666666666666666655322 1344445556666666666666
Q ss_pred HHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCC
Q 006744 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408 (632)
Q Consensus 329 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 408 (632)
.+++...... +-|...|..|..+|...|+..++..-..+. |...|+++.|...+....+..
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHhc
Confidence 6666655443 335556666666666666655554444332 334455566655555555443
No 130
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.34 E-value=0.0062 Score=63.63 Aligned_cols=223 Identities=13% Similarity=0.070 Sum_probs=142.2
Q ss_pred ChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHH
Q 006744 131 NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210 (632)
Q Consensus 131 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 210 (632)
+...|+.....+.++. ||. .|...+.++... +.|+.++|..+++.....+.. |..|...+-
T Consensus 24 qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~--------------r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~ 84 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKH---PNA-LYAKVLKALSLF--------------RLGKGDEALKLLEALYGLKGT-DDLTLQFLQ 84 (932)
T ss_pred HHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHH--------------HhcCchhHHHHHhhhccCCCC-chHHHHHHH
Confidence 5677887777777753 443 455556555432 235556666666666655554 888999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC--
Q 006744 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK-- 288 (632)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-- 288 (632)
..|...|+.++|..+|+..... -|+......+..+|.+.+++.+-.+.--+|-+. ..-+...|-+++..+...-.
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~ 161 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSE 161 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCC
Confidence 9999999999999999998876 577888888888999888877655555444443 22245555555555543211
Q ss_pred --------HHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHccCCHHHHHHHHH-HHHhCCCCCCHhcHHHHHHHHHhcCC
Q 006744 289 --------VGKACDLLKDLVDSG-YRADLGIYNSIIGGLCRVKQFDKAYKLFE-VTVQDDLAPDFSTVNPLLVCCAEMGR 358 (632)
Q Consensus 289 --------~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~ 358 (632)
..-|.+.++.+.+.+ ..-+..-...-...+-..|.+++|+.++. ...+.-..-+...-+.-+..+...++
T Consensus 162 ~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~ 241 (932)
T KOG2053|consen 162 NELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNR 241 (932)
T ss_pred cccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcC
Confidence 234666666666653 11111111122334456788999999884 33333333333444456677778888
Q ss_pred hhHHHHHHHHHHHCCCC
Q 006744 359 MDNFFKLLAQMEKLKFS 375 (632)
Q Consensus 359 ~~~a~~~~~~~~~~~~~ 375 (632)
+.+..++-.++...|.+
T Consensus 242 w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 242 WQELFELSSRLLEKGND 258 (932)
T ss_pred hHHHHHHHHHHHHhCCc
Confidence 88888888888877754
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.00032 Score=62.39 Aligned_cols=251 Identities=12% Similarity=0.086 Sum_probs=139.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccH
Q 006744 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI 394 (632)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (632)
++-+.-.|.+..++..-....... -+...-..+.++|...|.+.... .++.... .+.-.....+.......++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 556666788888877666554332 23334444557777777654322 2222221 22222222233333334444
Q ss_pred HHHH-HHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006744 395 MMAL-DVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472 (632)
Q Consensus 395 ~~a~-~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 472 (632)
++-. ++.+.+...... +......-...|++.|++++|++..+... +......=++.+.+..+.+.|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 333333333333 22333334456777888888887776521 222223333455667777888888888
Q ss_pred HHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006744 473 IIEMSQVPSVAAYNCLTKGLCK----IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548 (632)
Q Consensus 473 ~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 548 (632)
|.+- -+-.+.+.|..++.+ .+.+.+|.-+|+++-+. ..|+..+.+....++...|++++|..++++.....
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 7762 244556656555543 34677777777777543 35666677777777777778888888877777764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCC
Q 006744 549 CPPNEVICSAIISGMCKHGTLE-EARKVFTNLRERK 583 (632)
Q Consensus 549 ~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~m~~~~ 583 (632)
..++.+...++-+-...|.-. ...+.+..+....
T Consensus 238 -~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 238 -AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred -CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 445666665655555555543 3445555555443
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=0.00034 Score=74.26 Aligned_cols=133 Identities=12% Similarity=-0.015 Sum_probs=91.6
Q ss_pred CHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 006744 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421 (632)
Q Consensus 342 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 421 (632)
+...+..|.....+.|.+++|..+++.+.+.... .......+...+.+.+++++|...+++.....+.+....+.+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 4566666777777777777777777777765543 334444555566777777777777777777777777777777777
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006744 422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476 (632)
Q Consensus 422 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 476 (632)
+.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777632 233566677777777777777777777777664
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.00078 Score=59.53 Aligned_cols=152 Identities=14% Similarity=0.164 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHh---CC-CCCCHhc-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHH
Q 006744 322 KQFDKAYKLFEVTVQ---DD-LAPDFST-VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396 (632)
Q Consensus 322 g~~~~A~~~~~~m~~---~~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 396 (632)
.+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|...++.+...- +-+..+...-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 345555555555542 12 3333332 3344445555666666666666655443 3333343333444455566666
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475 (632)
Q Consensus 397 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 475 (632)
|+++++.+.+.++.|..+|-.-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-++++++-
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 666666666666556666655555555556555666555555543 344555565566666666666666666655554
No 134
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.29 E-value=9.1e-05 Score=62.32 Aligned_cols=95 Identities=9% Similarity=-0.069 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 006744 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494 (632)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 494 (632)
+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+...+.. ..+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445555566666666666666665543 3344555555556666666666666666666543 2245555556666666
Q ss_pred cCCHHHHHHHHHHHhhc
Q 006744 495 IGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 495 ~g~~~~A~~~~~~~~~~ 511 (632)
.|++++|+..|+..+..
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666665543
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.0038 Score=55.36 Aligned_cols=186 Identities=15% Similarity=0.111 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHHhC---C-CCcCHHh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHH
Q 006744 183 RIAEMLEILEKMRRN---L-CKPDVFA-YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG 257 (632)
Q Consensus 183 ~~~~a~~~~~~m~~~---~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 257 (632)
+.++.++++.++... | ..++..+ |..++-+....|+.+.|..+++++...- +-+...-..-...+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 556666666666532 3 3455543 5556666778888888999988887663 22222222222334456888899
Q ss_pred HHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744 258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337 (632)
Q Consensus 258 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (632)
+++++.+.+.+. .|..+|-.-+-..-..|+--+|++-+....+. +..|...|..+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 999998888763 36677776666666677777777777776665 3348888999999999999999999888888754
Q ss_pred CCCCCH-hcHHHHHHHHHhcC---ChhHHHHHHHHHHHCC
Q 006744 338 DLAPDF-STVNPLLVCCAEMG---RMDNFFKLLAQMEKLK 373 (632)
Q Consensus 338 ~~~p~~-~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~ 373 (632)
.|.. ..+..+...+...| +.+.+.++|.+..+..
T Consensus 184 --~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 --QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred --CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 3333 33334444443333 4455666666666543
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.10 E-value=0.00024 Score=59.37 Aligned_cols=98 Identities=17% Similarity=0.152 Sum_probs=46.1
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 006744 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490 (632)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 490 (632)
+......+...+...|++++|...|+.+...+ +.+...+..+...+...|++++|..+++...+.+ ..+...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 33334444445555555555555555554432 2233444444444555555555555555544432 123334444444
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 006744 491 GLCKIGEIDAAMMLVRDCLG 510 (632)
Q Consensus 491 ~~~~~g~~~~A~~~~~~~~~ 510 (632)
.|...|++++|...|+..++
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555443
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.09 E-value=0.00018 Score=60.20 Aligned_cols=92 Identities=15% Similarity=0.090 Sum_probs=41.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 006744 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322 (632)
Q Consensus 243 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 322 (632)
.+...+...|++++|.+.|+.+.+.+.. +...+..+..++.+.|++++|..+++.....+.. +...+..+...|...|
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcC
Confidence 3344444444444444444444443322 3444444444444444444444444444443322 3333444444444555
Q ss_pred CHHHHHHHHHHHHh
Q 006744 323 QFDKAYKLFEVTVQ 336 (632)
Q Consensus 323 ~~~~A~~~~~~m~~ 336 (632)
++++|...|+...+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555544443
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=5.7e-06 Score=50.17 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 006744 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD 237 (632)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 237 (632)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666655
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.00 E-value=0.00023 Score=69.74 Aligned_cols=124 Identities=15% Similarity=0.189 Sum_probs=98.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh
Q 006744 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285 (632)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 285 (632)
-..|+..+...++++.|+++|+++.+.. |++ ...++..+...++-.+|.+++.+..+.... +......-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 3455566667789999999999998763 554 345777787888888999999888876443 67777777788899
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006744 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335 (632)
Q Consensus 286 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 335 (632)
.++.+.|+.+.+++.+..+. +..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999887543 56699999999999999999998888664
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=1.1e-05 Score=48.91 Aligned_cols=33 Identities=33% Similarity=0.812 Sum_probs=22.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006744 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342 (632)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 342 (632)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=1.1e-05 Score=48.57 Aligned_cols=32 Identities=34% Similarity=0.584 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 006744 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236 (632)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 236 (632)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55566666666666666666666665555544
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.96 E-value=0.00045 Score=58.39 Aligned_cols=118 Identities=16% Similarity=0.207 Sum_probs=71.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChH--HHHHHHHHHHHHcCCH
Q 006744 459 ESGDILEACECHNKIIEMSQVPS--VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE--FKYALTILHVCRSGEA 534 (632)
Q Consensus 459 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~ 534 (632)
..++...+...++.+.+....-. ....-.+...+...|++++|...|+.++... ..+.. .....+...+...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 36666666666666666432111 1222334466667777777777777777653 12221 1223356666677788
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579 (632)
Q Consensus 535 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 579 (632)
++|+..++..... ......+....++|.+.|++++|+..|+..
T Consensus 102 d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8888877664333 234556677778888888888888887653
No 143
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.94 E-value=0.00013 Score=71.74 Aligned_cols=122 Identities=11% Similarity=0.120 Sum_probs=85.5
Q ss_pred CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 006744 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKEN--GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312 (632)
Q Consensus 235 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 312 (632)
..+......+++.+....+++++..++.+.... ....-..|..++++.|.+.|..++++.+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445566666677777777777777777776654 222234455677777777777777777777777777777888888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhc
Q 006744 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356 (632)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 356 (632)
.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888887777777666666666666666666555
No 144
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.93 E-value=0.024 Score=57.62 Aligned_cols=83 Identities=13% Similarity=0.229 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHH
Q 006744 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQE-GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI 596 (632)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l 596 (632)
.+.|-+|..--...|.++.|++.--.+.+- .+-|-..+|..|.-+.+....+-..-+.|-++....-.++....-|.++
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a~kq~ye~L 1100 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAEKQEYENL 1100 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHHHHHHHHH
Confidence 344444444455667777777654443332 3456677777766665555555555555555554444444444455554
Q ss_pred HHHH
Q 006744 597 LIEH 600 (632)
Q Consensus 597 ~~~~ 600 (632)
-...
T Consensus 1101 a~~i 1104 (1189)
T KOG2041|consen 1101 AFRI 1104 (1189)
T ss_pred HHHH
Confidence 4433
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.92 E-value=0.00077 Score=56.93 Aligned_cols=86 Identities=17% Similarity=0.120 Sum_probs=38.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcC
Q 006744 455 QCHVESGDILEACECHNKIIEMSQVPS--VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532 (632)
Q Consensus 455 ~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 532 (632)
..+...|++++|...|+.+.+....+. ....-.|...+...|++++|+..++... ........+......+.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~---~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP---DEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---CcchHHHHHHHHHHHHHHCC
Confidence 344445555555555555554332221 1122234444555555555555554421 11122233444555555555
Q ss_pred CHHHHHHHHHH
Q 006744 533 EAEKIIEVLNE 543 (632)
Q Consensus 533 ~~~~a~~~~~~ 543 (632)
++++|...|+.
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 55555555544
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=1.7e-05 Score=47.65 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 006744 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445 (632)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 445 (632)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356777777777777777777777777666655
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.89 E-value=0.00047 Score=67.59 Aligned_cols=125 Identities=17% Similarity=0.238 Sum_probs=83.3
Q ss_pred cHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 006744 379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV 458 (632)
Q Consensus 379 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 458 (632)
.+...++..+...++++.|.++|+++.+.. +.....++..+...++-.+|.+++++..+.. +-+...+..-...|.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344445555556667777777777777664 3344556677777777777777777777542 334555555555677
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508 (632)
Q Consensus 459 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 508 (632)
+.++.+.|..+.+++.+.. +-+..+|..|..+|...|+++.|+..+..+
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 7788888888888777743 123557788888888888888888777654
No 148
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.017 Score=55.10 Aligned_cols=107 Identities=12% Similarity=0.095 Sum_probs=64.5
Q ss_pred HHHHhcCChhhHHHHHHHHhhC---CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhc
Q 006744 420 GALLEIGEVKKALYLFGKMRGL---NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS-VAAYNCLTKGLCKI 495 (632)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 495 (632)
.-..+.|++.+|.+.|.+.+.. ++.++...|.....+..+.|+.++|+.--+...+.. +. +..|..-..++...
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLAL 334 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHH
Confidence 3455778888888888877654 244555566666667777888888887777766521 11 22233333445556
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 006744 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528 (632)
Q Consensus 496 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 528 (632)
++|++|.+-|+++++.....-...++.-...++
T Consensus 335 e~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLEKDCEIRRTLREAQLAL 367 (486)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 778888888888776544433333443333333
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.81 E-value=0.00029 Score=53.92 Aligned_cols=77 Identities=10% Similarity=0.261 Sum_probs=49.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CcCHHhHHHHHHHHHhcC--------ChhHHHHHHHHHHHcCCcccHHhHHH
Q 006744 208 AMIRVLAAERNLDACLRVWEEMKKDLV-EADVMAYVTLIMGLCKGG--------RVVRGHELFREMKENGILIDRAIYGV 278 (632)
Q Consensus 208 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~ 278 (632)
..|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455556777777777777777777 677777777777766542 22344556666666666666666666
Q ss_pred HHHHHH
Q 006744 279 LIEGLV 284 (632)
Q Consensus 279 li~~~~ 284 (632)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 665544
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.79 E-value=6.4e-05 Score=56.57 Aligned_cols=82 Identities=22% Similarity=0.225 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006744 495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK 574 (632)
Q Consensus 495 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 574 (632)
.|+++.|+.+++++++.....++...+..+..++.+.|++++|+.++++ .+.+ +.+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4677777777777776543322444444467777777777777777776 3222 1233444455777778888888887
Q ss_pred HHHH
Q 006744 575 VFTN 578 (632)
Q Consensus 575 ~~~~ 578 (632)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.77 E-value=0.014 Score=55.60 Aligned_cols=150 Identities=13% Similarity=0.169 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHC----CCCCC--HHhHHH
Q 006744 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES-GDILEACECHNKIIEM----SQVPS--VAAYNC 487 (632)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~----~~~p~--~~~~~~ 487 (632)
|...+..|...|++..|-.++.++- ..|... |++++|.+.|++..+. + .+. ..++..
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~ 160 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLK 160 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHH
Confidence 3344455556666666555544432 234444 5666666666665542 1 111 234455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCC----ChHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC--HHHHHH
Q 006744 488 LTKGLCKIGEIDAAMMLVRDCLGNVASG----PTEFK-YALTILHVCRSGEAEKIIEVLNEMTQE--GCPPN--EVICSA 558 (632)
Q Consensus 488 li~~~~~~g~~~~A~~~~~~~~~~~~~~----p~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~--g~~p~--~~~~~~ 558 (632)
+...+.+.|++++|+++|+++....... .+... |-..+..+...||...|.+.+++.... ++..+ ......
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~ 240 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED 240 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 6666777777777777777765432111 12211 222333444556777777777766544 22222 234445
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHH
Q 006744 559 IISGMCK--HGTLEEARKVFTNLR 580 (632)
Q Consensus 559 l~~~~~~--~g~~~~A~~~~~~m~ 580 (632)
|+.+|-. ...+++|..-|+.+.
T Consensus 241 l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 241 LLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHhCCHHHHHHHHHHHcccC
Confidence 5555532 233444444444443
No 152
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.76 E-value=0.00049 Score=67.72 Aligned_cols=122 Identities=11% Similarity=0.095 Sum_probs=95.9
Q ss_pred CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHH
Q 006744 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL--VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277 (632)
Q Consensus 200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 277 (632)
+.+......+++.+....+++.+.+++-+..... ...-..|.+++|+.|...|..++++.++..=...|+-||..+||
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4466667777888888888888988888887652 22334566789999999999999999999988999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 006744 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321 (632)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 321 (632)
.||+.+.+.|++..|.++...|...+...+..++..-+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999998888776655666665555555444
No 153
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.75 E-value=3.5e-05 Score=45.09 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006744 205 AYTAMIRVLAAERNLDACLRVWEEMKKDL 233 (632)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 233 (632)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665554
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.8e-05 Score=44.47 Aligned_cols=29 Identities=34% Similarity=0.775 Sum_probs=15.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006744 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338 (632)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 338 (632)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.71 E-value=0.0012 Score=53.61 Aligned_cols=100 Identities=11% Similarity=0.034 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 006744 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQEG--CPPNEVICSAIIS 561 (632)
Q Consensus 485 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~l~~ 561 (632)
+-.++..+.+.|++++|.+.|+.++...+..+. ...+..+...+...|+++.|+.+++.+.... .+.....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555566666666666665543222111 2233335555666666666666666665432 1111344555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC
Q 006744 562 GMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 562 ~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
++.+.|+.++|.+.++++.+...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCc
Confidence 66666666666666666666643
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.70 E-value=0.0007 Score=52.12 Aligned_cols=96 Identities=19% Similarity=0.146 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006744 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564 (632)
Q Consensus 485 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 564 (632)
+..+...+...|++++|...++++++... .+...+..+...+...|++++|.+.++...+.. +.+..++..+..++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP--DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 34455666667777777777777665422 122445556666667777777777777776653 444566777777777
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 006744 565 KHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 565 ~~g~~~~A~~~~~~m~~~~ 583 (632)
..|++++|.+.+....+.+
T Consensus 80 ~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 80 KLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHhHHHHHHHHHHHHccC
Confidence 8888888888877766543
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.69 E-value=0.002 Score=52.31 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=55.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-hHHHHHHHHH
Q 006744 450 FSIAIQCHVESGDILEACECHNKIIEMSQV--PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP-TEFKYALTIL 526 (632)
Q Consensus 450 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~ 526 (632)
+......+.+.|++++|.+.|..+.+.... .....+..+..++.+.|++++|...|+.+....+..+ ....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344444555566666666666666543211 1123444566666667777777777766665433222 1234445566
Q ss_pred HHHHcCCHHHHHHHHHHHHhC
Q 006744 527 HVCRSGEAEKIIEVLNEMTQE 547 (632)
Q Consensus 527 ~~~~~g~~~~a~~~~~~m~~~ 547 (632)
.+...|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666667777777777776665
No 158
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.69 E-value=0.1 Score=54.98 Aligned_cols=162 Identities=14% Similarity=0.049 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCChh---hHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 006744 414 IYNILMGALLEIGEVK---KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490 (632)
Q Consensus 414 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 490 (632)
+-+.|+..+-+.++.. +|+-+++.-.... +-|..+-..+|+.|+-.|-+..|.+.|+.+--..+.-|..-|- +..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHH
Confidence 4567777888877765 4455555544432 3455556677888888899999999888887666665544332 334
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHH---HHHhCCCCCCHHHHHHHHHHHHhc
Q 006744 491 GLCKIGEIDAAMMLVRDCLGNVASG-PTEFKYALTILHVCRSGEAEKIIEVLN---EMTQEGCPPNEVICSAIISGMCKH 566 (632)
Q Consensus 491 ~~~~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~---~m~~~g~~p~~~~~~~l~~~~~~~ 566 (632)
.+...|++..+...+.....-.... .+..- +|....+.|.+.+..++.. +|......--..+-+..++..+..
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e---yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPE---YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNA 592 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHH---HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556677777777666554322111 11111 3444446666666655443 222211111122335566667777
Q ss_pred CCHHHHHHHHHHHH
Q 006744 567 GTLEEARKVFTNLR 580 (632)
Q Consensus 567 g~~~~A~~~~~~m~ 580 (632)
++.+.-.+.+..|.
T Consensus 593 ~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 593 DRGTQLLKLLESMK 606 (932)
T ss_pred CcHHHHHHHHhccc
Confidence 88887777777775
No 159
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.69 E-value=0.00095 Score=51.15 Aligned_cols=78 Identities=17% Similarity=0.318 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC-cccHHhHHHHHHHHHhcCC--------HHHHHHHHHHHHHCCCCCCHhhHH
Q 006744 242 VTLIMGLCKGGRVVRGHELFREMKENGI-LIDRAIYGVLIEGLVGEGK--------VGKACDLLKDLVDSGYRADLGIYN 312 (632)
Q Consensus 242 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~--------~~~a~~~~~~m~~~g~~~~~~~~~ 312 (632)
...|..|...+++...-.+|+.+++.|+ .|+..+|+.++...++..- +-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666777777777777777777 7777777777776655321 233444555555555555555555
Q ss_pred HHHHHHH
Q 006744 313 SIIGGLC 319 (632)
Q Consensus 313 ~li~~~~ 319 (632)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 5555443
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.68 E-value=0.0072 Score=50.22 Aligned_cols=99 Identities=11% Similarity=-0.012 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 006744 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495 (632)
Q Consensus 416 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 495 (632)
-.+...+...|++++|..+|+-+.... +-+..-|-.|.-+|-..|++++|...|.......+ -|+..+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 334445566777777777777766532 22333344455556666777777777777776553 3566666677777777
Q ss_pred CCHHHHHHHHHHHhhcCCCCC
Q 006744 496 GEIDAAMMLVRDCLGNVASGP 516 (632)
Q Consensus 496 g~~~~A~~~~~~~~~~~~~~p 516 (632)
|+.+.|.+.|+.++...+..|
T Consensus 117 G~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 117 DNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CCHHHHHHHHHHHHHHhccCh
Confidence 777777777777665544333
No 161
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.68 E-value=0.061 Score=52.14 Aligned_cols=205 Identities=20% Similarity=0.203 Sum_probs=97.2
Q ss_pred hcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcccc--H---HHHHHHHhh----hcccHHHHHHHHHHHHhCCCCChhH
Q 006744 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD--L---EKFFEFLVG----KEERIMMALDVFEELKGKGYSSVPI 414 (632)
Q Consensus 344 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~---~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~ 414 (632)
.+|..++....+.++...|.+.+.-+.-........ + -..+..+.+ ..-+...=..+|+.+...+......
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQL 378 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQL 378 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 456677777777777777777777665543321100 0 111222222 1122333444555555554442222
Q ss_pred HHHHHH---HHHhcCC-hhhHHHHHHHHhhCCCCcC-HH----HHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCC-
Q 006744 415 YNILMG---ALLEIGE-VKKALYLFGKMRGLNLEVN-SL----SFSIAIQCHVE---SGDILEACECHNKIIEMSQVPS- 481 (632)
Q Consensus 415 ~~~li~---~~~~~g~-~~~A~~~~~~m~~~~~~p~-~~----t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~p~- 481 (632)
-.-|+. -+-+.|. -++|+.+++...+- .+. .. ++..+-++|.+ ...+.+-..+-+-+.+.|+.|-
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~ 456 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT 456 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence 222222 2333444 56777777776653 222 22 22222233332 2333444444444445565542
Q ss_pred ---HHhHHHHHHH--HHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006744 482 ---VAAYNCLTKG--LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556 (632)
Q Consensus 482 ---~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 556 (632)
...-|.|.++ +...|++.++.-.-.-+. .+.|+..+|..+........++++|.+++.. ++|+..++
T Consensus 457 i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ 528 (549)
T PF07079_consen 457 ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMR 528 (549)
T ss_pred ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhH
Confidence 2233444332 345566666654332222 2346666666666666666666666666654 35555555
Q ss_pred HH
Q 006744 557 SA 558 (632)
Q Consensus 557 ~~ 558 (632)
+.
T Consensus 529 ds 530 (549)
T PF07079_consen 529 DS 530 (549)
T ss_pred HH
Confidence 43
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.65 E-value=0.0009 Score=51.47 Aligned_cols=92 Identities=16% Similarity=0.084 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhc
Q 006744 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286 (632)
Q Consensus 207 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 286 (632)
..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.++...+.... +..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 334444555555666666555555432 122244444555555555555555555555444322 233444455555555
Q ss_pred CCHHHHHHHHHHHH
Q 006744 287 GKVGKACDLLKDLV 300 (632)
Q Consensus 287 g~~~~a~~~~~~m~ 300 (632)
|+.+.|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555554444
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.63 E-value=0.014 Score=55.70 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=59.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHH
Q 006744 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE-GKVGKACDLLKDLVDS----GYR-ADLGIYNSIIGG 317 (632)
Q Consensus 244 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~ 317 (632)
.+..|...|++..|-+++..+ ...|-.. |++++|++.|++..+. |.. --..++..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 345556666666665555443 3344455 6777777777665532 210 012345566677
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC-----Hh-cHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006744 318 LCRVKQFDKAYKLFEVTVQDDLAPD-----FS-TVNPLLVCCAEMGRMDNFFKLLAQMEKL 372 (632)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~~~~p~-----~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 372 (632)
+.+.|++++|.++|++........+ .. .|...+-++...||...|...+++....
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888888888888887765432211 11 1222233445556666666666665543
No 164
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.62 E-value=0.0013 Score=57.13 Aligned_cols=110 Identities=15% Similarity=0.225 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 006744 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228 (632)
Q Consensus 149 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 228 (632)
..|..+|..+++.|.+.. ..++|.++-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.
T Consensus 44 ~k~K~~F~~~V~~f~~~~-----------~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRD-----------VRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA 110 (228)
T ss_pred cccHHHHHHHHHHHHhcC-----------CCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH
Confidence 467788888888887663 12568888888999999999999999999999988754 3321 0111111
Q ss_pred HHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC
Q 006744 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288 (632)
Q Consensus 229 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 288 (632)
+- .-| -.+.+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 111 ~F---------------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EF---------------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred Hh---------------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 10 000 12334455666666666666666666666666655544
No 165
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.61 E-value=0.019 Score=53.04 Aligned_cols=173 Identities=10% Similarity=0.026 Sum_probs=95.5
Q ss_pred hhcccHHHHHHHHHHHHhCCCCChhHH---HHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHH--c---
Q 006744 389 GKEERIMMALDVFEELKGKGYSSVPIY---NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE--S--- 460 (632)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~--~--- 460 (632)
...|++++|.+.|+.+....+.+.... -.++.++.+.+++++|...+++..+....-...-+...+.+.+. .
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~ 122 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS 122 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh
Confidence 445666677777776666554433322 34556677777788888777777765322222233333333321 1
Q ss_pred ------------CC---HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 006744 461 ------------GD---ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525 (632)
Q Consensus 461 ------------g~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 525 (632)
.| ..+|...|+.+++.- |+ ..-..+|...+..+... .-...+ .+.
T Consensus 123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~-------------S~ya~~A~~rl~~l~~~----la~~e~-~ia 182 (243)
T PRK10866 123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PN-------------SQYTTDATKRLVFLKDR----LAKYEL-SVA 182 (243)
T ss_pred hhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cC-------------ChhHHHHHHHHHHHHHH----HHHHHH-HHH
Confidence 01 123444444444421 22 22233333333222111 001111 245
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 526 LHVCRSGEAEKIIEVLNEMTQE--GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 526 ~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 581 (632)
.-|.+.|.+..|+.-++.+++. +.+........++.+|.+.|..++|.++...+..
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 5677888888888888888876 2333455666788889999999999888776643
No 166
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.52 E-value=0.0016 Score=56.73 Aligned_cols=104 Identities=17% Similarity=0.231 Sum_probs=78.3
Q ss_pred cCHHhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHh
Q 006744 201 PDVFAYTAMIRVLAA-----ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275 (632)
Q Consensus 201 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 275 (632)
.|..+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.||+.+=+ |.+. -..+|+.+--.
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h-------- 114 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH-------- 114 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc--------
Confidence 466677777777764 47778788888999999999999999999998875 4332 22233322211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 006744 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323 (632)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 323 (632)
| -.+.+-|++++++|...|+-||..++..|++.+.+.+.
T Consensus 115 -------y--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 -------Y--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -------C--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1 23457799999999999999999999999999988875
No 167
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.097 Score=50.19 Aligned_cols=261 Identities=13% Similarity=0.041 Sum_probs=120.5
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHH
Q 006744 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262 (632)
Q Consensus 183 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 262 (632)
++.+|+..+...++..+. ++..|..-...+...|++++|+--.+.-.+.. .-....+.-.-+++...++..+|.+.++
T Consensus 64 ~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred hHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHHHHHhh
Confidence 344444555555544322 34555555666666777777766555443321 1112233333344444444444444443
Q ss_pred H---------------HHHcCC-cccHHhHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH--HHHccCC
Q 006744 263 E---------------MKENGI-LIDRAIYGVL-IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG--GLCRVKQ 323 (632)
Q Consensus 263 ~---------------m~~~~~-~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~ 323 (632)
. ...... .|...+|..| ..++...|+.++|..+--...+... ...+...++ ++.-.++
T Consensus 142 ~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~ 218 (486)
T KOG0550|consen 142 SKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDN 218 (486)
T ss_pred hhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccc
Confidence 1 111111 1222233322 2445556666666666555554321 112222222 2334556
Q ss_pred HHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHH
Q 006744 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE 403 (632)
Q Consensus 324 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 403 (632)
.+.|...|++.+..+ |+...-..+- ...+.++.+.+.| ....+.|++..|.+.|.+
T Consensus 219 ~~ka~~hf~qal~ld--pdh~~sk~~~----------~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 219 ADKAINHFQQALRLD--PDHQKSKSAS----------MMPKKLEVKKERG------------NDAFKNGNYRKAYECYTE 274 (486)
T ss_pred hHHHHHHHhhhhccC--hhhhhHHhHh----------hhHHHHHHHHhhh------------hhHhhccchhHHHHHHHH
Confidence 666666666655432 2222111110 0011111111111 113455666666666666
Q ss_pred HHhCCCC----ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006744 404 LKGKGYS----SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL---SFSIAIQCHVESGDILEACECHNKIIEM 476 (632)
Q Consensus 404 ~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 476 (632)
....++. +...|.....+..+.|+.++|+.--++... .|.. .|..-..++...+++++|.+-|++..+.
T Consensus 275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6655543 334466666666667777777666665543 2222 2222233555566777777777666654
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.51 E-value=0.033 Score=47.06 Aligned_cols=135 Identities=14% Similarity=0.038 Sum_probs=88.6
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHH
Q 006744 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522 (632)
Q Consensus 443 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 522 (632)
..|+...-..+..+..+.|+..+|...|++...--..-|....-.+.++....++..+|...++++.+.....-...+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 35666666667777777888888888887777644445666667777777777888888888877776543332233334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579 (632)
Q Consensus 523 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 579 (632)
.+.+.+...|+...|..-|+..... -|+...-......+.+.|+.++|..-+.++
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4667777778888888888777765 455554444555566777766665544433
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.50 E-value=0.0027 Score=60.24 Aligned_cols=131 Identities=13% Similarity=0.203 Sum_probs=89.0
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHH-HHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG-LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282 (632)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 282 (632)
.+|..+++..-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888888888888887553 2233334333333 23346666688888888775 44467778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744 283 LVGEGKVGKACDLLKDLVDSGYRAD---LGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337 (632)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (632)
+.+.|+.+.|..+|++.... +..+ ...|...+..=.+.|+.+.+.++.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888765 2212 247888888888888888888888777653
No 170
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.50 E-value=0.033 Score=51.50 Aligned_cols=59 Identities=10% Similarity=0.024 Sum_probs=32.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLG--IYNSIIGGLCRVKQFDKAYKLFEVTVQD 337 (632)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (632)
....+.+.|++++|.+.|+.+...-+..... ..-.+..+|.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3334455666666666666666543322111 1123455666667777777777666654
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.0021 Score=60.97 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHHHHHcCCHHHHHH
Q 006744 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP-TEFKYALTILHVCRSGEAEKIIE 539 (632)
Q Consensus 461 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 539 (632)
++.+.|..+|+...+. +..+...|...++.+.+.|+.+.|..+|++.+....... ....|...+.-=.+.|+.+.+.+
T Consensus 50 ~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 50 KDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp S-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3333344444444432 222334444444444444444444444444443321111 12234444444444444444444
Q ss_pred HHHHHHh
Q 006744 540 VLNEMTQ 546 (632)
Q Consensus 540 ~~~~m~~ 546 (632)
+.+++.+
T Consensus 129 v~~R~~~ 135 (280)
T PF05843_consen 129 VEKRAEE 135 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.48 E-value=0.0038 Score=51.83 Aligned_cols=95 Identities=11% Similarity=-0.071 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh
Q 006744 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285 (632)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 285 (632)
.-.+...+...|++++|..+|+.+.... +-+..-|-.|..++-..|++++|+..|......++. |...+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 3444555667888888888888777654 235556666777777778888888888888777654 77777788888888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 006744 286 EGKVGKACDLLKDLVDS 302 (632)
Q Consensus 286 ~g~~~~a~~~~~~m~~~ 302 (632)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888888776654
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.43 E-value=0.0037 Score=54.39 Aligned_cols=94 Identities=13% Similarity=-0.047 Sum_probs=47.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcc--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006744 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILI--DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316 (632)
Q Consensus 239 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 316 (632)
..|..+...+...|++++|+..|++.......+ ...++..+...|...|+.++|+..++........ ...++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 344445555555566666666666555432221 1235555556666666666666666665544221 2333444444
Q ss_pred HHH-------ccCCHHHHHHHHHH
Q 006744 317 GLC-------RVKQFDKAYKLFEV 333 (632)
Q Consensus 317 ~~~-------~~g~~~~A~~~~~~ 333 (632)
.+. ..|++++|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 444 55666555544443
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.40 E-value=0.0004 Score=52.20 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=8.5
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 006744 244 LIMGLCKGGRVVRGHELFRE 263 (632)
Q Consensus 244 li~~~~~~g~~~~a~~~~~~ 263 (632)
+..++.+.|++++|.++++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.38 E-value=0.0072 Score=52.78 Aligned_cols=97 Identities=13% Similarity=0.076 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006744 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564 (632)
Q Consensus 486 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 564 (632)
..+...+...|++++|...|++.++.....++ ...+..+...+.+.|++++|+..+++..+.. +.+...+..+..++.
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 33344444444444444444444332111111 1233334444444445555555444444431 223333444444444
Q ss_pred hcCC--------------HHHHHHHHHHHHHCC
Q 006744 565 KHGT--------------LEEARKVFTNLRERK 583 (632)
Q Consensus 565 ~~g~--------------~~~A~~~~~~m~~~~ 583 (632)
..|+ +++|.+++++..+.+
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 4443 455566666555544
No 176
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.37 E-value=0.0041 Score=58.92 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhC----C-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC
Q 006744 412 VPIYNILMGALLEIGEVKKALYLFGKMRGL----N-LEVNSLSFSIAIQCHVESGDILEACECHNKIIEM-----SQVPS 481 (632)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~p~ 481 (632)
...+..+..++.-.|+++.|.+.|+..... | -.....+..++...|.-..++++|+.++.+-+.. ...-.
T Consensus 235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe 314 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE 314 (639)
T ss_pred HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345777888888888888888887764322 2 1234455667777777778888888887654421 11234
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006744 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510 (632)
Q Consensus 482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 510 (632)
...+-+|..+|...|..++|+.+.+..++
T Consensus 315 ~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 315 LRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66778899999999999999888776543
No 177
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.37 E-value=0.0063 Score=60.02 Aligned_cols=88 Identities=8% Similarity=-0.094 Sum_probs=48.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHH
Q 006744 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292 (632)
Q Consensus 213 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 292 (632)
+...|++++|+++|++.++.. +-+...|..+..+|...|++++|+..++++.+.... +...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHH
Confidence 445556666666666555543 234445555555555566666666666655554332 444555555555666666666
Q ss_pred HHHHHHHHHC
Q 006744 293 CDLLKDLVDS 302 (632)
Q Consensus 293 ~~~~~~m~~~ 302 (632)
+..|++....
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 6666655554
No 178
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.34 E-value=0.0058 Score=60.24 Aligned_cols=102 Identities=11% Similarity=0.062 Sum_probs=83.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH
Q 006744 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324 (632)
Q Consensus 245 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 324 (632)
...+...|++++|++.|++.++.+.. +...|..+..+|.+.|++++|+..+++++..... +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 45566789999999999999987655 6788889999999999999999999999987554 667888889999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhcHHHHH
Q 006744 325 DKAYKLFEVTVQDDLAPDFSTVNPLL 350 (632)
Q Consensus 325 ~~A~~~~~~m~~~~~~p~~~~~~~ll 350 (632)
++|+..|++..+. .|+.......+
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 9999999998875 34444444444
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.33 E-value=0.012 Score=51.32 Aligned_cols=93 Identities=12% Similarity=0.065 Sum_probs=66.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC--HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD--VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL 279 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 279 (632)
....|..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 345677777788888999999999998876532221 357778888888889999999998888875433 45666677
Q ss_pred HHHHHhcCCHHHHHHH
Q 006744 280 IEGLVGEGKVGKACDL 295 (632)
Q Consensus 280 i~~~~~~g~~~~a~~~ 295 (632)
...|...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7777777775554433
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.33 E-value=0.017 Score=59.71 Aligned_cols=139 Identities=9% Similarity=0.025 Sum_probs=86.3
Q ss_pred CcCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhc--------CCHHHHHHHHHHHh
Q 006744 444 EVNSLSFSIAIQCHVES--G---DILEACECHNKIIEMSQVPS-VAAYNCLTKGLCKI--------GEIDAAMMLVRDCL 509 (632)
Q Consensus 444 ~p~~~t~~~ll~~~~~~--g---~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~~~~ 509 (632)
+.|...|...+++.... + +.+.|..+|+++++.. |+ ...|..+..++... ++++.+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 44555566665553322 2 2556666666666643 33 33343333322211 12334444444433
Q ss_pred hcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586 (632)
Q Consensus 510 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 586 (632)
.......+...|.++...+...|++++|...++++.+.+ |+...|..+..+|...|+.++|.+.+++....+...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 322233445667777666667789999999999988875 678888888889999999999999998888877654
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.30 E-value=0.02 Score=59.20 Aligned_cols=121 Identities=17% Similarity=0.040 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC--------ChhhHHHHHHHHhhC-CCCcCHHHHHHHHHHHHHcCCHH
Q 006744 394 IMMALDVFEELKGKGYSSVPIYNILMGALLEIG--------EVKKALYLFGKMRGL-NLEVNSLSFSIAIQCHVESGDIL 464 (632)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~ 464 (632)
.+.|..+|++..+.++.....|..+..++.... +...+.+...+.... ....+...|..+.-.....|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 444555555555555444444444433332211 122233333332221 12233455555555555567777
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 006744 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516 (632)
Q Consensus 465 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p 516 (632)
+|...++++++.+ |+...|..+...+...|+.++|.+.+++.+...+..|
T Consensus 438 ~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 438 EAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 7777777777654 4666677777777777777777777777665443333
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.28 E-value=0.0097 Score=54.43 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=67.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHH
Q 006744 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292 (632)
Q Consensus 213 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 292 (632)
+.+.++|++|++.|.+.++.. +-|.+.|..-..+|++.|.++.|++=.+..+..+.. ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 567778888888888877764 346666777777888888888887777776665333 356778888888888888888
Q ss_pred HHHHHHHHHCCCCCCHhhH
Q 006744 293 CDLLKDLVDSGYRADLGIY 311 (632)
Q Consensus 293 ~~~~~~m~~~g~~~~~~~~ 311 (632)
++.|++.++. .|+-.+|
T Consensus 169 ~~aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESY 185 (304)
T ss_pred HHHHHhhhcc--CCCcHHH
Confidence 8888777764 4444444
No 183
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.03 Score=51.65 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=87.5
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCCHHH
Q 006744 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS---GEAEKIIEVLNEMTQEGCPPNEVI 555 (632)
Q Consensus 479 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~ 555 (632)
.-|...|..|...|...|+.+.|..-|.+..+-.+.+|+... .+..++..+ ....++..+|+++.... +-|...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~--g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILL--GLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 347889999999999999999999999999887666665443 344444332 35678999999999885 667778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhh
Q 006744 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV 592 (632)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 592 (632)
...|...+...|++.+|...|+.|.+.....++....
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ 266 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSL 266 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHH
Confidence 8888889999999999999999999988665444433
No 184
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.25 E-value=0.31 Score=50.04 Aligned_cols=205 Identities=10% Similarity=0.089 Sum_probs=127.4
Q ss_pred CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCc--------CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCc
Q 006744 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD-LVEA--------DVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270 (632)
Q Consensus 200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 270 (632)
.|....|..|.......-.++.|...|-+...- |++. +...-.+-|.+| -|++++|.++|-+|.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 377788888888777777777777776554432 1110 111111222222 388999999988876653
Q ss_pred ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHH
Q 006744 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR--ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348 (632)
Q Consensus 271 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 348 (632)
..|..+.+.|++-.+.++++.-- .+.. --...|+.+...++....+++|.++|..-.. -..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~ 827 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TEN 827 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHh
Confidence 24567778888877766664311 1110 1235788888888888899999998875431 123
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 006744 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEV 428 (632)
Q Consensus 349 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 428 (632)
.+.++.+..++++-+.+...+ +-+..+...+..++.+.|.-++|.+.|-+.... ...+..|...+++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p--------kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP--------KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccCc--------HHHHHHHHHHHHH
Confidence 566666666666554444332 335666777778888888888887766543221 2345667777777
Q ss_pred hhHHHHHHHH
Q 006744 429 KKALYLFGKM 438 (632)
Q Consensus 429 ~~A~~~~~~m 438 (632)
.+|.++-+..
T Consensus 895 ~~avelaq~~ 904 (1189)
T KOG2041|consen 895 GEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhc
Confidence 7777776554
No 185
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.25 E-value=0.0067 Score=52.78 Aligned_cols=96 Identities=10% Similarity=0.050 Sum_probs=70.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA--DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL 279 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 279 (632)
....|..+...+...|++++|+..|++.......+ ...+|..+..++...|++++|++.+++..+.... ...++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHH
Confidence 35567778888888999999999999987653222 2357888889999999999999999998875332 34556666
Q ss_pred HHHHH-------hcCCHHHHHHHHHH
Q 006744 280 IEGLV-------GEGKVGKACDLLKD 298 (632)
Q Consensus 280 i~~~~-------~~g~~~~a~~~~~~ 298 (632)
...+. +.|++++|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66666 66776655555444
No 186
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.22 E-value=0.24 Score=48.15 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHH-HHHH
Q 006744 448 LSFSIAIQCHVESGDILEACECHNKIIEMS-QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY-ALTI 525 (632)
Q Consensus 448 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~ 525 (632)
..|...+++..+...++.|..+|-+..+.+ +.+++.++++++..++ .|+..-|.++|+--+... ||...| +-.+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHH
Confidence 457778888888888999999999999888 5578888999998776 477888999998765443 343333 2345
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 526 LHVCRSGEAEKIIEVLNEMTQEGCPPN--EVICSAIISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 526 ~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
.-+..-++-+.|..+|+..+.. +..+ ..+|..+++--..-|++..+..+-++|.+.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 5666778888899999866654 3333 568889998888889998888887777665
No 187
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.20 E-value=0.004 Score=59.04 Aligned_cols=133 Identities=12% Similarity=-0.049 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCCChHH
Q 006744 449 SFSIAIQCHVESGDILEACECHNKIIE----MSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG----NVASGPTEF 519 (632)
Q Consensus 449 t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~ 519 (632)
.|..+...|.-.|+++.|....+.-++ .|-. .....+..|..++.-.|+++.|.+.|+..+. .........
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344455555556788888777654332 2322 2245667788888888999999888876542 212222333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 520 KYALTILHVCRSGEAEKIIEVLNEMTQ----EG-CPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~m~~----~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 581 (632)
...+|..+|.-..++++|+.++.+-.. .+ ..-....+-+|..++...|..+.|+.+...-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 444577888888888888888765332 11 112345677888899999999998887766544
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.13 E-value=0.0026 Score=44.89 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=38.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 524 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
+...+...|++++|++.|++.++.. +-+...+..+..++...|++++|..+|+++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3445566677777777777777664 4456667777777777777777777777776554
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.095 Score=47.02 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=74.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHH-----
Q 006744 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL----- 279 (632)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l----- 279 (632)
+-+.++..+.-.|.+.-..+++++.++..-+.+......|.+.-.+.||.+.|...|++..+..-..|..+++.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345555666666666666677776666554445555666666666667777777777766553333333333332
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744 280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337 (632)
Q Consensus 280 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (632)
...|.-.+++..|...|.+....+.. |...-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23344455666666666666654332 4444444333344456666677766666654
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.09 E-value=0.0025 Score=45.69 Aligned_cols=63 Identities=19% Similarity=0.116 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHC
Q 006744 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG-TLEEARKVFTNLRER 582 (632)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 582 (632)
..|..+...+...|++++|+..|++..+.. +.+...|..+..+|...| ++++|++.+++.++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 345555555666666666666666666553 445556666666666666 567777766666554
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.07 E-value=0.0022 Score=45.79 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=45.2
Q ss_pred hcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHH
Q 006744 390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA 453 (632)
Q Consensus 390 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 453 (632)
+.|++++|+++|+.+....+.+..++..+..+|.+.|++++|..+++++... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 4577788888888887777777777888888888888888888888887764 4554444443
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.03 E-value=0.03 Score=44.80 Aligned_cols=55 Identities=22% Similarity=0.225 Sum_probs=25.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744 457 HVESGDILEACECHNKIIEMSQVPS--VAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 457 ~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 511 (632)
+-..|+.++|..+|++..+.|.... ...+-.+...|...|++++|..++++....
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344555555555555554443322 223334444455555555555555554443
No 193
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.03 E-value=0.34 Score=46.63 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 006744 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493 (632)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 493 (632)
+.+..|.-+...|+...|.++-.+.. -||..-|...+.+++..+++++-.++... +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34555666677777777777766653 47777788888888888888776665332 123466777888888
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006744 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543 (632)
Q Consensus 494 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 543 (632)
+.|+..+|..++.++ .+..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888777662 123356677788888887766544
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.00 E-value=0.016 Score=54.00 Aligned_cols=100 Identities=10% Similarity=0.057 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 006744 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQEG--CPPNEVICSAIIS 561 (632)
Q Consensus 485 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~l~~ 561 (632)
|...+..+.+.|++++|+..|+.+++..+..+- ...+-.+...|...|++++|+..|+.+.+.- -+.....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444444556666666666666655433310 1122236666666677777777776666541 1112334444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC
Q 006744 562 GMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 562 ~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
++...|+.++|.++|+.+.+.-.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCc
Confidence 66677777777777777766644
No 195
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.00 E-value=0.0084 Score=54.82 Aligned_cols=70 Identities=17% Similarity=0.033 Sum_probs=37.2
Q ss_pred HHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHH
Q 006744 381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452 (632)
Q Consensus 381 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 452 (632)
|..-..+|.+.|.++.|++-.+.....++....+|..|..+|...|++++|++.|++..+ +.|+-.+|-.
T Consensus 118 ycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 118 YCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHH
Confidence 333333444444444444444444444444455566666666666666666666666555 4555555443
No 196
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.00 E-value=0.0028 Score=44.71 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=38.1
Q ss_pred HHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 006744 386 FLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440 (632)
Q Consensus 386 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 440 (632)
..+.+.|++++|.+.|+.+.+..+.+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455667777777777777777666777777777777777777777777777665
No 197
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.93 E-value=0.17 Score=51.26 Aligned_cols=93 Identities=13% Similarity=0.132 Sum_probs=52.0
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHH---------HHHHhCCCCcCHHhHHHHHHHHHhcCCh--hHHHHHHHHHHHcCC
Q 006744 201 PDVFAYTAMIRVLAAERNLDACLRVW---------EEMKKDLVEADVMAYVTLIMGLCKGGRV--VRGHELFREMKENGI 269 (632)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~ 269 (632)
+..+.+.+-+..|...|.+++|.++- +.+... ..+.-.++..=++|.+-.+. -+...-+++++++|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 44445666666778888888876542 221111 12233344555566555443 334444566777777
Q ss_pred cccHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006744 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKD 298 (632)
Q Consensus 270 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (632)
.|+... +...++-.|++.+|.++|.+
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 776643 34455566777777777754
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.92 E-value=0.0034 Score=44.79 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=17.8
Q ss_pred CChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300 (632)
Q Consensus 252 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 300 (632)
|++++|+++|+++.+.... +..++..+..+|.+.|++++|..+++.+.
T Consensus 5 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp THHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444443333222 33333333334444444444444443333
No 199
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.91 E-value=0.37 Score=46.86 Aligned_cols=37 Identities=11% Similarity=-0.020 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006744 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587 (632)
Q Consensus 551 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 587 (632)
.|--.+.+++.++.-.|+.++|.+..++|.+.....|
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 3444566778888888888888888888887764444
No 200
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.91 E-value=0.28 Score=47.69 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006744 516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548 (632)
Q Consensus 516 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 548 (632)
.+-..+.+++.++.-.|+.++|.+..++|.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 556667788999999999999999999999773
No 201
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.90 E-value=0.11 Score=46.57 Aligned_cols=164 Identities=13% Similarity=0.107 Sum_probs=75.2
Q ss_pred hhcccHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc-----
Q 006744 389 GKEERIMMALDVFEELKGKGYS---SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES----- 460 (632)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~----- 460 (632)
...|++++|.+.|+.+....+. -..+.-.++.++.+.|++++|...++++.+.-..-....+...+.+.+..
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~ 95 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPG 95 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCcc
Confidence 4445566666666665554332 23345556666777777777777777766542111111222222222111
Q ss_pred --------CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcC
Q 006744 461 --------GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532 (632)
Q Consensus 461 --------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 532 (632)
+...+|...|+.++ .-|=...-..+|...+..+.+. --...+ .+..-|.+.|
T Consensus 96 ~~~~~~D~~~~~~A~~~~~~li---------------~~yP~S~y~~~A~~~l~~l~~~----la~~e~-~ia~~Y~~~~ 155 (203)
T PF13525_consen 96 ILRSDRDQTSTRKAIEEFEELI---------------KRYPNSEYAEEAKKRLAELRNR----LAEHEL-YIARFYYKRG 155 (203)
T ss_dssp HH-TT---HHHHHHHHHHHHHH---------------HH-TTSTTHHHHHHHHHHHHHH----HHHHHH-HHHHHHHCTT
T ss_pred chhcccChHHHHHHHHHHHHHH---------------HHCcCchHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHcc
Confidence 11223333333333 3333333334443333332211 000111 1455667778
Q ss_pred CHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 006744 533 EAEKIIEVLNEMTQEGCPPN---EVICSAIISGMCKHGTLEEAR 573 (632)
Q Consensus 533 ~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~ 573 (632)
.+..|+.-++.+++. ++-+ ......++.+|.+.|..+.|.
T Consensus 156 ~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 156 KYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 888888888877776 2222 223456777777777776443
No 202
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.90 E-value=0.48 Score=46.26 Aligned_cols=49 Identities=16% Similarity=0.138 Sum_probs=31.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579 (632)
Q Consensus 529 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 579 (632)
..+|++.++.-.-..+.+ +.|++.+|..++-++....++++|..++..+
T Consensus 473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 355666666655554444 4567777777777777777777777777654
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.83 E-value=0.27 Score=44.19 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=10.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 278 VLIEGLVGEGKVGKACDLLKDLVD 301 (632)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~ 301 (632)
.++.++.+.|+++.|...++++.+
T Consensus 47 ~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 47 MLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 204
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.80 E-value=0.095 Score=41.60 Aligned_cols=134 Identities=16% Similarity=0.245 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhc---HHHHHHHHHhcCChhHH
Q 006744 286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST---VNPLLVCCAEMGRMDNF 362 (632)
Q Consensus 286 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a 362 (632)
.|.+++..++..+.... -+..-+|.+|--....-+-+-..++++.+-+ ..|... ...++.+|+..|...
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~s-- 86 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKLS-- 86 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT-----
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcchH--
Confidence 46666666666666554 2444455555444444444444555544432 222222 234455555544322
Q ss_pred HHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 006744 363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442 (632)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 442 (632)
......+......|+-+...+++..+.+.+..++...-.+..+|.+.|+..++.+++.+..+.|
T Consensus 87 ----------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 87 ----------------EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred ----------------HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 2222333334444555555555555554333355555556666666666666666666665555
Q ss_pred C
Q 006744 443 L 443 (632)
Q Consensus 443 ~ 443 (632)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 3
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.1 Score=48.24 Aligned_cols=99 Identities=13% Similarity=0.090 Sum_probs=54.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhc---CChhHHHHHHHHHHHcCCcccHHhHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG---GRVVRGHELFREMKENGILIDRAIYGV 278 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~ 278 (632)
|...|-.|...|...|+++.|..-|.+..+.. .++...+..+..++... ....++.++|+++.+.+.. |..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 55666666666666666666666666655542 23444444444444333 2345556666666655433 4555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 279 LIEGLVGEGKVGKACDLLKDLVDS 302 (632)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~ 302 (632)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 555566666666666666666654
No 206
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.61 Score=49.17 Aligned_cols=59 Identities=12% Similarity=0.250 Sum_probs=33.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH----HHHHHHHHCCCCC
Q 006744 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR----KVFTNLRERKLLT 586 (632)
Q Consensus 524 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~----~~~~~m~~~~~~~ 586 (632)
++..+++..+.+.++.+.+..-+. ++..|..++..+.+.+.++.-. ++++........|
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ip 773 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIP 773 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCC
Confidence 455556666777777666654332 6677777777777776544433 3344444444433
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.68 E-value=0.14 Score=41.04 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=25.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcC--HHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744 212 VLAAERNLDACLRVWEEMKKDLVEAD--VMAYVTLIMGLCKGGRVVRGHELFREMKE 266 (632)
Q Consensus 212 ~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 266 (632)
++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+|++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555443322 12333344444455555555555555443
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.66 E-value=0.066 Score=52.69 Aligned_cols=62 Identities=18% Similarity=0.068 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006744 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV----AAYNCLTKGLCKIGEIDAAMMLVRDCLG 510 (632)
Q Consensus 447 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~ 510 (632)
...++.+..+|...|++++|...|++.++.. |+. .+|..+..+|...|++++|+..++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555666666666666666655532 331 2355555556666666666666655544
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.55 Score=42.38 Aligned_cols=132 Identities=16% Similarity=0.118 Sum_probs=82.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccc-----cHHHHH
Q 006744 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA-----DLEKFF 384 (632)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l 384 (632)
+.+.++..+.-.|.+.-....+.+..+....-+......+.+.-.+.||.+.|..+|++..+..-..+. .+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344556666666777777777777776655556666666777777777777777777766543222221 222222
Q ss_pred HHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 006744 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441 (632)
Q Consensus 385 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 441 (632)
...|.-.+++..|...|.++...+..+....|.-.-+..-.|+..+|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333455566667777777776666666666666666666677777777777777663
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.53 E-value=0.1 Score=44.03 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 006744 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264 (632)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 264 (632)
...++..+...|++++|.++++.+.... +-|...|..+|.+|...|+..+|.+.|+.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444455555566666666666555543 335555666666666666666666665554
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.51 E-value=0.072 Score=49.68 Aligned_cols=98 Identities=13% Similarity=0.096 Sum_probs=53.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-HHHHHHHHH
Q 006744 450 FSIAIQCHVESGDILEACECHNKIIEMSQVPS--VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT-EFKYALTIL 526 (632)
Q Consensus 450 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~ 526 (632)
|...+..+.+.|++++|...|+.+++.-.... ...+-.+..+|...|++++|...|+.++...+..|. ...+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445666666666666665422111 234455666666667777777777666654433222 222333455
Q ss_pred HHHHcCCHHHHHHHHHHHHhC
Q 006744 527 HVCRSGEAEKIIEVLNEMTQE 547 (632)
Q Consensus 527 ~~~~~g~~~~a~~~~~~m~~~ 547 (632)
.+...|+.++|..+|++..+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555667777777777766655
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.44 E-value=0.013 Score=42.37 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=40.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 526 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
..|.+.+++++|+++++.+...+ +.+...|.....++.+.|++++|.+.|+...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34566677777777777777764 55666677777777777777777777777776654
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.41 E-value=0.1 Score=43.99 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCCCh
Q 006744 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR-----ERKLLTEANT 590 (632)
Q Consensus 522 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~ 590 (632)
..++..+...|++++|+.+++.+.... +-|...|..++.+|...|+..+|.++|+++. +.|+.|.+.+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 346667778899999999999999874 6788899999999999999999999998884 4587775543
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.35 E-value=0.059 Score=43.66 Aligned_cols=52 Identities=12% Similarity=-0.001 Sum_probs=35.7
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 006744 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529 (632)
Q Consensus 478 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 529 (632)
..|+..+..+++.+|+..|++..|+++++...+..++.-+...|..|+.-+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4477777777777777777777777777777766666655666665555443
No 215
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.28 E-value=1.2 Score=43.04 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 006744 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH 527 (632)
Q Consensus 448 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 527 (632)
.+.+..+.-|...|+...|.++-.+. + .|+...|...+.+|+..|+|++-.++... +..+.-|...+.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEA 246 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHH
Confidence 35566677778889988888876655 2 48899999999999999999988876543 2344678889999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579 (632)
Q Consensus 528 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 579 (632)
|.+.|+..+|..+..++ .+..-+..|.++|++.+|.+..-+.
T Consensus 247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999999998762 1256677889999999998775443
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.28 E-value=0.02 Score=42.08 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=15.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 483 AAYNCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 483 ~~~~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
.+++.+...|...|++++|+..|++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666666666666666665543
No 217
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.26 E-value=0.62 Score=39.70 Aligned_cols=127 Identities=12% Similarity=0.086 Sum_probs=70.7
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCc-ccHHhHHHH
Q 006744 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL-IDRAIYGVL 279 (632)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l 279 (632)
|++..--.|..++.+.|++.+|...|++...--+.-|......+.++....+++..|...++++-+.... -+..+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 5555555666667777777777777776664434455666666666666667777777777666554310 012233444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 006744 280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329 (632)
Q Consensus 280 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 329 (632)
...|...|...+|+..|+...+.-..|....| -...+.+.|+.+++..
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~a 214 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHH
Confidence 55666666666666666666654322222222 2233445555444443
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.23 E-value=0.028 Score=40.69 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=35.6
Q ss_pred HhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 006744 387 LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441 (632)
Q Consensus 387 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 441 (632)
+|.+.+++++|.++++.+...++.+...|.....++.+.|++++|...|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555566666666666666665556666666666667777777777776666653
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.22 E-value=1.7 Score=44.45 Aligned_cols=199 Identities=16% Similarity=0.146 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006744 154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233 (632)
Q Consensus 154 ~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 233 (632)
-|..|...-..+=+++.|++.+.+.... ++-+.+.-+++++++|-.|+... +...++-.|++.+|-++|.+--..+
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rVRdl-~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en 662 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRVRDL-RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN 662 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhcc-HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh
Confidence 4555554444455566666666554432 34455566788888888888764 3445666777777777775432111
Q ss_pred CCcCHHhHHH-----HHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHH------HHHC
Q 006744 234 VEADVMAYVT-----LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD------LVDS 302 (632)
Q Consensus 234 ~~p~~~~~~~-----li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~------m~~~ 302 (632)
.-...|+- ..+-+...|..++-..+.++-.+- .-+..-=.+....+...|+.++|..+.-+ +.+.
T Consensus 663 --RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI 738 (1081)
T KOG1538|consen 663 --RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDI 738 (1081)
T ss_pred --hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHH
Confidence 01111111 123334444444433333322110 00111112334455566666666654311 1111
Q ss_pred CCCC---CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHH
Q 006744 303 GYRA---DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369 (632)
Q Consensus 303 g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 369 (632)
+.+. +..+...+...+.+...+.-|-++|.+|-. ...++......++|.+|..+-+..
T Consensus 739 ~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 739 ARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred HhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhC
Confidence 1111 223333333334445556666666665532 234555556666666666665543
No 220
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.20 E-value=0.082 Score=48.18 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHH
Q 006744 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG--CPPNEVICSAI 559 (632)
Q Consensus 485 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~l 559 (632)
|+.-+. +.+.|++.+|...|...++..+.. |+...| |..++...|+++.|..+|..+.+.- .+--+..+.-|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 444333 234455666666665555443322 344444 5566666666666666666555431 11123455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 006744 560 ISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
..+..+.|+.++|..+|+++.++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 56666666666666666666655
No 221
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.18 E-value=0.45 Score=47.24 Aligned_cols=63 Identities=14% Similarity=0.067 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547 (632)
Q Consensus 485 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 547 (632)
-..+..++.+.|+.++|++.++++++..+..-+......|+.++...+.+.++..++.+-.+.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 344666667778888888888888765443333344555788888888888888888776543
No 222
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.89 Score=42.09 Aligned_cols=120 Identities=16% Similarity=0.137 Sum_probs=67.7
Q ss_pred hhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 006744 389 GKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468 (632)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 468 (632)
...|++.+|..+|.........+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+...
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 45567777777777776666556666677777888888888888887776543211122222222333333333333333
Q ss_pred HHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744 469 CHNKIIEMSQVP-SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 469 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 511 (632)
+-...-. .| |...--.+...+...|+.++|.+.+-.++..
T Consensus 225 l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 225 LQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333332 23 4445555666666777777776666555543
No 223
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=2.4 Score=44.40 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 006744 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494 (632)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 494 (632)
.+--+.-+...|+..+|.++-.+.+ -||...|..=+.+++..+++++-+++-+... .+.-|.-.+.+|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 3444444555566666665555543 3555555555556666666555444433221 13334555556666
Q ss_pred cCCHHHHHHHHHH
Q 006744 495 IGEIDAAMMLVRD 507 (632)
Q Consensus 495 ~g~~~~A~~~~~~ 507 (632)
.|+.++|.+++-+
T Consensus 757 ~~n~~EA~KYipr 769 (829)
T KOG2280|consen 757 QGNKDEAKKYIPR 769 (829)
T ss_pred cccHHHHhhhhhc
Confidence 6666666665544
No 224
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.96 E-value=1.8 Score=42.39 Aligned_cols=405 Identities=13% Similarity=0.118 Sum_probs=210.2
Q ss_pred HHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006744 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267 (632)
Q Consensus 188 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 267 (632)
+++=+++.++ +.|+.+|-.||.-|...|.+++..+++++|..- .+--..+|..-+.+-...+++.....+|.+....
T Consensus 29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 29 LRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 3555555553 458899999999999999999999999999843 2234567888888877788999999999999887
Q ss_pred CCcccHHhHHHHHHHHHhcCCH------HHHHHHHHHHHH-CCCCC-CHhhHHHHHHHHH---ccCC------HHHHHHH
Q 006744 268 GILIDRAIYGVLIEGLVGEGKV------GKACDLLKDLVD-SGYRA-DLGIYNSIIGGLC---RVKQ------FDKAYKL 330 (632)
Q Consensus 268 ~~~p~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~-~g~~~-~~~~~~~li~~~~---~~g~------~~~A~~~ 330 (632)
.+. ...|...++.--+.+.. ....+.|+-... .++.| ....|+..+..+- ..|. ++...+.
T Consensus 106 ~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 SLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred hcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 554 55666666544443311 122233433333 34444 3445665554432 2333 3445555
Q ss_pred HHHHHhCCCCCCHhcHHHHHHHHHh----c---------CC----hhHHHHHHHHHHH--CCCCcccc----HHHHHHH-
Q 006744 331 FEVTVQDDLAPDFSTVNPLLVCCAE----M---------GR----MDNFFKLLAQMEK--LKFSVAAD----LEKFFEF- 386 (632)
Q Consensus 331 ~~~m~~~~~~p~~~~~~~ll~~~~~----~---------~~----~~~a~~~~~~~~~--~~~~~~~~----~~~~l~~- 386 (632)
+.+|....+. ...-|-+-|-. . |+ +-.|.+.++++.. .|...... .++-+..
T Consensus 184 Y~ral~tP~~----nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~ 259 (660)
T COG5107 184 YMRALQTPMG----NLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART 259 (660)
T ss_pred HHHHHcCccc----cHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc
Confidence 5555543221 11111111111 0 00 1123333333321 12211100 0000000
Q ss_pred ----------H-----hhhccc-H-HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHH
Q 006744 387 ----------L-----VGKEER-I-MMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449 (632)
Q Consensus 387 ----------~-----~~~~g~-~-~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 449 (632)
- +.-.|+ . ...--+++.....-+-...+|----..+...++-+.|+........ ..|.
T Consensus 260 s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sps--- 334 (660)
T COG5107 260 SDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPS--- 334 (660)
T ss_pred ccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCc---
Confidence 0 000000 0 0011111111111111233333333344456666677766654433 2233
Q ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHH--------------CCC---------------CCCHHhHHHHHHHHHhcCCHH
Q 006744 450 FSIAIQ-CHVESGDILEACECHNKIIE--------------MSQ---------------VPSVAAYNCLTKGLCKIGEID 499 (632)
Q Consensus 450 ~~~ll~-~~~~~g~~~~a~~~~~~~~~--------------~~~---------------~p~~~~~~~li~~~~~~g~~~ 499 (632)
....+. .|.-..+-+....+|++..+ .+. .--..+|.+.++.-.+..-++
T Consensus 335 L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~ 414 (660)
T COG5107 335 LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLE 414 (660)
T ss_pred hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHH
Confidence 111111 11112222222222221110 011 112345667777777888899
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHH
Q 006744 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC-SAIISGMCKHGTLEEARKVFTN 578 (632)
Q Consensus 500 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~ 578 (632)
.|..+|-++.+..-..++++.+++++..++ .|+...|..+|+.-... + ||...| +..+.-+...++-+.|+.+|+.
T Consensus 415 aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f-~d~~~y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 415 AARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-F-PDSTLYKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-C-CCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 999999998877667899999998888766 56888899999876655 3 444444 5666777888999999999985
Q ss_pred HHHCCCCCCCChhhHHHHHHHHhhhchhHHHH
Q 006744 579 LRERKLLTEANTIVYDEILIEHMKKKTADLVL 610 (632)
Q Consensus 579 m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~ 610 (632)
..++=-.. .--..|..++..--..++...|.
T Consensus 492 sv~r~~~~-q~k~iy~kmi~YEs~~G~lN~v~ 522 (660)
T COG5107 492 SVERLEKT-QLKRIYDKMIEYESMVGSLNNVY 522 (660)
T ss_pred hHHHHHHh-hhhHHHHHHHHHHHhhcchHHHH
Confidence 44331110 11225556655555555544443
No 225
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.96 E-value=2.3 Score=43.48 Aligned_cols=175 Identities=10% Similarity=-0.004 Sum_probs=101.9
Q ss_pred hhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 006744 388 VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467 (632)
Q Consensus 388 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 467 (632)
-.+.|+.+.+.-+|++.....-.-...|-..+.-.-..|+.+-|..++....+--++-...+-..-..-+-..|+++.|.
T Consensus 307 ~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~ 386 (577)
T KOG1258|consen 307 EITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK 386 (577)
T ss_pred hhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence 34667777777776665443222333455555555555888888777766655433222222111112234567999999
Q ss_pred HHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHH---HHHHHHhhcCCCCChHHHHHHHHHHH-----HHcCCHHHHH
Q 006744 468 ECHNKIIEMSQVPSV-AAYNCLTKGLCKIGEIDAAM---MLVRDCLGNVASGPTEFKYALTILHV-----CRSGEAEKII 538 (632)
Q Consensus 468 ~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~a~ 538 (632)
.+++.+.+.- |+. ..-..-+....+.|..+.+. .++...... .-+......+..-+ .-.++.+.|.
T Consensus 387 ~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~---~~~~~i~~~l~~~~~r~~~~i~~d~~~a~ 461 (577)
T KOG1258|consen 387 VILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG---KENNGILEKLYVKFARLRYKIREDADLAR 461 (577)
T ss_pred HHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc---ccCcchhHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999988753 442 22223345566778888777 444443321 11111222222222 2347889999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006744 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGT 568 (632)
Q Consensus 539 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 568 (632)
.++.+|.+. ++++...|..++..+...+.
T Consensus 462 ~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 462 IILLEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 999999987 57888888888888776653
No 226
>PRK15331 chaperone protein SicA; Provisional
Probab=95.95 E-value=0.24 Score=41.65 Aligned_cols=85 Identities=16% Similarity=0.070 Sum_probs=41.7
Q ss_pred hcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 006744 390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC 469 (632)
Q Consensus 390 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 469 (632)
..|++++|..+|.-+.-.++.+..-|..|..++-..+++++|+..|......+ .-|...+-....++...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 44555555555555555444455555555555555555555555555443332 12233333344444455555555555
Q ss_pred HHHHHH
Q 006744 470 HNKIIE 475 (632)
Q Consensus 470 ~~~~~~ 475 (632)
|...++
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 544444
No 227
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.94 E-value=0.65 Score=37.08 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 523 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
..+..+..+|+-+.-.++++++.+.+ .+++.....+..+|.+.|+..++.+++++.-++|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34555666677777777777766543 56777777777788888888888888877777775
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.93 E-value=0.026 Score=41.54 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 519 FKYALTILHVCRSGEAEKIIEVLNEMTQE----GC-PPN-EVICSAIISGMCKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 581 (632)
.+|+.+...|...|++++|++.|++..+. |- .++ ..++..+..+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45778899999999999999999988754 21 122 55788899999999999999999998764
No 229
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.91 E-value=0.14 Score=41.51 Aligned_cols=53 Identities=8% Similarity=0.065 Sum_probs=39.5
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 006744 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE-GCPPNEVICSAIISGMC 564 (632)
Q Consensus 512 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~ 564 (632)
.+..|+..+..+++.+|+..|++..|+++++...+. +++.+..+|..|+.=+.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 355688888888888888888888888888877654 66667778877776444
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.90 E-value=1.8 Score=41.68 Aligned_cols=263 Identities=12% Similarity=0.040 Sum_probs=146.5
Q ss_pred CHHhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCcCHHh--HHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHH
Q 006744 202 DVFAYTAMIRV--LAAERNLDACLRVWEEMKKDLVEADVMA--YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG 277 (632)
Q Consensus 202 ~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 277 (632)
|....-.|+.+ -.-.|+++.|.+-|+.|... |.... ...|.-..-+.|+.+.|.++-+..-..-.. -...+.
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~ 192 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAAR 192 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHH
Confidence 44444444433 33578999999999998853 32222 222223334568888888887776655333 356777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHh--hHHHHHHHHH---ccCCHHHHHHHHHHHHhCCCCCCHhcHH-HHH
Q 006744 278 VLIEGLVGEGKVGKACDLLKDLVDSG-YRADLG--IYNSIIGGLC---RVKQFDKAYKLFEVTVQDDLAPDFSTVN-PLL 350 (632)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll 350 (632)
..+...+..|+++.|+++++.-.... +.++.. .-..|+.+-. -.-+...|...-.+..+ +.||..--. .-.
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AA 270 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAA 270 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHH
Confidence 88888888999999998888766542 223322 1122222211 11234445444444332 344443322 233
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHH-HHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 006744 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL-DVFEELKGKGYSSVPIYNILMGALLEIGEVK 429 (632)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 429 (632)
.++.+.|+..++-.+++.+-+....|+. . .+..+.+.|+..... +-.+.+....+.+..+.-.+..+-...|++.
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 6777888888888888888776554432 1 122234444432211 1111222222225566666667777777777
Q ss_pred hHHHHHHHHhhCCCCcCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHC
Q 006744 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHV-ESGDILEACECHNKIIEM 476 (632)
Q Consensus 430 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~~~~~ 476 (632)
.|..--+.... ..|....|..|.+.-. ..|+-.++.+.+.+..+.
T Consensus 347 ~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 347 AARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 66665555544 3566666666666433 347777777777776654
No 231
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.89 E-value=2.5 Score=46.77 Aligned_cols=26 Identities=8% Similarity=0.215 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcC--ChhHHHHHHHHHHH
Q 006744 241 YVTLIMGLCKGG--RVVRGHELFREMKE 266 (632)
Q Consensus 241 ~~~li~~~~~~g--~~~~a~~~~~~m~~ 266 (632)
...+|.+|.+.+ .+++|++...+...
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 344555666555 55555555555443
No 232
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.86 E-value=1.8 Score=41.58 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=57.7
Q ss_pred HHHHHHHHHh--cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHH--HhcCChhHHHHHHHHHHHcCCcccHHhHH----
Q 006744 206 YTAMIRVLAA--ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL--CKGGRVVRGHELFREMKENGILIDRAIYG---- 277 (632)
Q Consensus 206 ~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~---- 277 (632)
|..|-.++.. .|+-..|.++-.+-.+. +.-|....-.++.+- .-.|+++.|.+-|+.|.. |..+-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHH
Confidence 5555555443 34555555444433211 122333333333322 233666666666666654 222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006744 278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335 (632)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 335 (632)
.|.-.--+.|+.+.|..+-++.-..-.. -...+...+...|..|+++.|+++++.-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 1222223455555555555555443222 23455556666666666666666665444
No 233
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.85 E-value=0.24 Score=50.05 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=77.3
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 006744 129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV-------PELMDSQGRIAEMLEILEKMRRNLCKP 201 (632)
Q Consensus 129 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l-------~~~~~~~g~~~~a~~~~~~m~~~~~~~ 201 (632)
.++.+.+.+....-.--..++ ....+.++..+-+.|..+.|.++ |+...+.|+++.|.++.++. .
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~------~ 345 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKEL------D 345 (443)
T ss_dssp TT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCC------S
T ss_pred cCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhc------C
Confidence 456666555554211112222 44588999999999999998876 45555666666666654333 3
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 281 (632)
+...|..|.....+.|+++-|.+.|.+.. -|..|+-.|.-.|+.+.-.++.+.....|- ++....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~ 410 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQ 410 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHH
Confidence 55566666666666666666666666543 234455555556666555555555544432 334444
Q ss_pred HHHhcCCHHHHHHHHH
Q 006744 282 GLVGEGKVGKACDLLK 297 (632)
Q Consensus 282 ~~~~~g~~~~a~~~~~ 297 (632)
++.-.|+.++..+++.
T Consensus 411 ~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 411 AALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHT-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 4444555555555543
No 234
>PRK15331 chaperone protein SicA; Provisional
Probab=95.80 E-value=0.44 Score=40.07 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=52.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH
Q 006744 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361 (632)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 361 (632)
-+...|++++|..+|.-+...++. +...|..|..++-..+++++|+..|......+.. |...+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 344567777777777666665443 4555666666666667777777777655443321 33334445566666677666
Q ss_pred HHHHHHHHHH
Q 006744 362 FFKLLAQMEK 371 (632)
Q Consensus 362 a~~~~~~~~~ 371 (632)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 6666666555
No 235
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.80 E-value=0.055 Score=48.98 Aligned_cols=110 Identities=12% Similarity=0.200 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 006744 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228 (632)
Q Consensus 149 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 228 (632)
+.|-.+|-..+..+... ....++.++-....++.|.+.|+..|..+|+.|++.+-+..-.
T Consensus 64 ~RdK~sfl~~V~~F~E~-----------sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi--------- 123 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEK-----------SVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI--------- 123 (406)
T ss_pred cccHHHHHHHHHHHHHh-----------hhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc---------
Confidence 44555665555555432 1224566777777888999999999999999998876443211
Q ss_pred HHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC
Q 006744 229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288 (632)
Q Consensus 229 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 288 (632)
|.. .+..+.--|- .+-+-+++++++|...|+-||..+-..|++++.+.+.
T Consensus 124 -------P~n-vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 124 -------PQN-VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred -------cHH-HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111 0111111111 1123355566666666666666666666666655554
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.71 E-value=0.64 Score=47.77 Aligned_cols=120 Identities=14% Similarity=0.095 Sum_probs=58.2
Q ss_pred hcCCHHHHHHHHHHHHhC-CCCcC-----HHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCcCHHhHHHH-HHHH
Q 006744 180 SQGRIAEMLEILEKMRRN-LCKPD-----VFAYTAMIRVLAA----ERNLDACLRVWEEMKKDLVEADVMAYVTL-IMGL 248 (632)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~-~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~ 248 (632)
=.|+-+.+++++.+..+. ++.-. ...|+..+..++. ..+.+.|.++++.+.+. -|+...|... .+.+
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~ 277 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLE 277 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 345555555555554432 12111 1124444443332 34556677777777665 4665555443 2344
Q ss_pred HhcCChhHHHHHHHHHHHcCC---cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 249 CKGGRVVRGHELFREMKENGI---LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301 (632)
Q Consensus 249 ~~~g~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (632)
...|++++|++.|++...... +.....+--+.-++.-.+++++|.+.|..+.+
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 455777777777775442100 01122233333444455555555555555554
No 237
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.67 E-value=0.2 Score=45.55 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=77.3
Q ss_pred cCHHhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHh
Q 006744 201 PDVFAYTAMIRVLAA-----ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275 (632)
Q Consensus 201 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 275 (632)
.|-.+|-+.+..+.. .+.++-....++.|.+.|++.|..+|+.||+.+-+..-+. ..+|+.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~------------ 130 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQK------------ 130 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHH------------
Confidence 456666666666543 3566666777888999999999999999998776543221 122222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH-HHHHHHHHHH
Q 006744 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF-DKAYKLFEVT 334 (632)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m 334 (632)
..-.|=+ +-+-+++++++|...|+.||-.+-..|++++.+.+.. .+..++.--|
T Consensus 131 ---~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 131 ---VFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred ---HHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 1112222 2345789999999999999999999999999988763 3333333333
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=1.5 Score=39.20 Aligned_cols=147 Identities=13% Similarity=0.124 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHHhHHH
Q 006744 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-----PSVAAYNC 487 (632)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~ 487 (632)
..|+--...|..+|..+.|-..+++.-+. ....+.++|+++|++....-.. --...+..
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 34666677788888887776666654331 2334555666666554431101 11233455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh---cCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHH
Q 006744 488 LTKGLCKIGEIDAAMMLVRDCLG---NVASGPTE-FKYALTILHVCRSGEAEKIIEVLNEMTQEG---CPPNEVICSAII 560 (632)
Q Consensus 488 li~~~~~~g~~~~A~~~~~~~~~---~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~l~ 560 (632)
+...|++...+++|-..+.+-.. .....++. ..|-..|..+....++..|..+++.-.+.+ -.-+..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 56667777777777666554211 11111222 235556667777789999999998855432 234566788888
Q ss_pred HHHHhcCCHHHHHHHH
Q 006744 561 SGMCKHGTLEEARKVF 576 (632)
Q Consensus 561 ~~~~~~g~~~~A~~~~ 576 (632)
.+| ..|+.+++.+++
T Consensus 236 ~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHh-ccCCHHHHHHHH
Confidence 877 788888877764
No 239
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.60 E-value=1.1 Score=37.34 Aligned_cols=32 Identities=6% Similarity=-0.005 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 006744 394 IMMALDVFEELKGKGYSSVPIYNILMGALLEI 425 (632)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 425 (632)
.......++.+...+..+...+|.++..|++.
T Consensus 23 ~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 23 LEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 33333333333333322444455555555443
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=1.2 Score=41.83 Aligned_cols=116 Identities=13% Similarity=0.009 Sum_probs=60.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHH--H--HHHHhcCChh
Q 006744 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL--L--VCCAEMGRMD 360 (632)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--l--~~~~~~~~~~ 360 (632)
..|+..+|...++++.+.-++ |...++-.-++|.-+|+.+.-...++++... ..+|...|..+ + -++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456666777777777665333 6666666667777777777766666666532 12333222211 1 2233455566
Q ss_pred HHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHH
Q 006744 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE 403 (632)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 403 (632)
+|++.-++..+.+. .+..........+...|+..++.+...+
T Consensus 193 dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 66555555544332 1233333444444445555555554443
No 241
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.59 E-value=4.9 Score=44.62 Aligned_cols=154 Identities=17% Similarity=0.119 Sum_probs=88.3
Q ss_pred ccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHH----HHHHHHcCCHHHHH
Q 006744 392 ERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA----IQCHVESGDILEAC 467 (632)
Q Consensus 392 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l----l~~~~~~g~~~~a~ 467 (632)
++++.|+..+.++. ...|.-.++.--++|.+.+|+.++ .|+...+..+ .+.+...+.+++|.
T Consensus 894 ~ry~~AL~hLs~~~------~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aa 959 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG------ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAA 959 (1265)
T ss_pred HHHHHHHHHHHHcC------ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHH
Confidence 45555555555443 223444555555666666666654 4555544443 44455566777776
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK--YALTILHVCRSGEAEKIIEVLNEMT 545 (632)
Q Consensus 468 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~ 545 (632)
-.|+..-+ ..-.+.+|..+|+|++|+.+..++-. ..+... -..|+.-+...++.-+|-+++.+..
T Consensus 960 l~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 960 LMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 66654422 23456677788888888887776432 223222 1346666667788888888777765
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580 (632)
Q Consensus 546 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 580 (632)
.. ....+..|++...|++|.++.....
T Consensus 1027 sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1027 SD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred cC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 43 2233345556667777776654443
No 242
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.59 E-value=0.92 Score=37.84 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=61.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhH
Q 006744 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256 (632)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 256 (632)
.+.+.|........++.+...+. .+...++.++..|++.+. ++.++.++. ..+......++..|.+.+.+++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcCcHHH
Confidence 33333445555555655555543 466667777777776532 333333331 1233444456666666666666
Q ss_pred HHHHHHHHHHcCCcccHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006744 257 GHELFREMKENGILIDRAIYGVLIEGLVGE-GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319 (632)
Q Consensus 257 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 319 (632)
+.-++.++.. |...+..+... ++.+.|.+++.+- -+...|..++..+.
T Consensus 88 ~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 88 AVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 6666655422 12223333333 5666666665541 14456666665554
No 243
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.55 E-value=0.095 Score=51.61 Aligned_cols=118 Identities=12% Similarity=0.031 Sum_probs=85.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006744 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE-FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559 (632)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 559 (632)
+...++.+..+|.+.|++++|+..|++.++..+..+.. ..|..+..+|...|+.++|++.++++.+.+ .+ .|..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~~i 149 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFSTI 149 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHHHH
Confidence 47788999999999999999999999988664333322 457789999999999999999999999863 22 23221
Q ss_pred HH--HHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhh
Q 006744 560 IS--GMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602 (632)
Q Consensus 560 ~~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~ 602 (632)
.. .+....+.++..++++.+.+-|........+...|+.+...
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~~g~~~~~~~kL~~E~~a 194 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGEDIGSSFRRDLKLISEVQA 194 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCccCCchhhHHHHHHHHhc
Confidence 11 11123344578888998998887666566666666666554
No 244
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.54 E-value=0.034 Score=57.14 Aligned_cols=14 Identities=21% Similarity=0.384 Sum_probs=5.4
Q ss_pred HhhHHHHHHHHHcc
Q 006744 308 LGIYNSIIGGLCRV 321 (632)
Q Consensus 308 ~~~~~~li~~~~~~ 321 (632)
..+|..=|+.+|+.
T Consensus 838 a~afgF~is~L~kL 851 (1102)
T KOG1924|consen 838 AQAFGFNISFLCKL 851 (1102)
T ss_pred chhhccchHHHHhh
Confidence 33333334444433
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.52 E-value=0.33 Score=49.08 Aligned_cols=133 Identities=14% Similarity=0.138 Sum_probs=82.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282 (632)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 282 (632)
..-.+.++..+-+.|..+.|+++-.+-. .-.....+.|+++.|.++.++. .+...|..|.+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 3446777777777888888877653321 2234455677777777765432 256678888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHH
Q 006744 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362 (632)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 362 (632)
..+.|+++-|++.|++..+ |..|+-.|.-.|+.+...++.+.....| -++....++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 8888888888877776543 4556666777777777777776666554 245555566666777666
Q ss_pred HHHHHH
Q 006744 363 FKLLAQ 368 (632)
Q Consensus 363 ~~~~~~ 368 (632)
.+++..
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.52 E-value=0.76 Score=47.24 Aligned_cols=118 Identities=20% Similarity=0.152 Sum_probs=69.7
Q ss_pred cccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC---CCcCHHHHHHHHHHHHHcCCHHHHH
Q 006744 391 EERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN---LEVNSLSFSIAIQCHVESGDILEAC 467 (632)
Q Consensus 391 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~t~~~ll~~~~~~g~~~~a~ 467 (632)
....+.|.+++..+.++-+.+..-.-.-.+.+...|++++|++.|++..... .+.....+--+.-.+.-..++++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4566777777777777655444444444556666777888877777654321 1222334445555666777777777
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHH-HHHhcCCH-------HHHHHHHHHHh
Q 006744 468 ECHNKIIEMSQVPSVAAYNCLTK-GLCKIGEI-------DAAMMLVRDCL 509 (632)
Q Consensus 468 ~~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~-------~~A~~~~~~~~ 509 (632)
+.|..+.+.. ..+..+|..+.- ++...|+. ++|.++|+++.
T Consensus 326 ~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 7777777643 234444443332 33455666 67777776654
No 247
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.45 E-value=2 Score=39.12 Aligned_cols=172 Identities=15% Similarity=0.078 Sum_probs=97.5
Q ss_pred hhcccHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc-----
Q 006744 389 GKEERIMMALDVFEELKGKGYS---SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES----- 460 (632)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~----- 460 (632)
.+.|++++|.+.|+.+....+. ...+--.++.++-+.+++++|+..+++....--.-...-|...|.+.+.-
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 3557777777777777766544 34456666777788888888888888877653222333444445444421
Q ss_pred --CCHHH---HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHH-HH-HHHHHHHHcCC
Q 006744 461 --GDILE---ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK-YA-LTILHVCRSGE 533 (632)
Q Consensus 461 --g~~~~---a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~-~l~~~~~~~g~ 533 (632)
.|... |..-|+.+++. -||..- ...|...+..+. |... ++ .+.+-|.+.|.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~r--yPnS~Y-------------a~dA~~~i~~~~-------d~LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQR--YPNSRY-------------APDAKARIVKLN-------DALAGHEMAIARYYLKRGA 182 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHH--CCCCcc-------------hhhHHHHHHHHH-------HHHHHHHHHHHHHHHHhcC
Confidence 22222 33333333332 122110 011111111100 0000 00 24566778888
Q ss_pred HHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 534 AEKIIEVLNEMTQEGCPPNEV---ICSAIISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 534 ~~~a~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
+..|..-+++|++. .+-... .+-.+..+|...|..++|.+.-+-+...-
T Consensus 183 ~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 183 YVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred hHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 99999999998887 444433 34566778888999999888877766553
No 248
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.29 E-value=1.1 Score=42.59 Aligned_cols=127 Identities=12% Similarity=0.112 Sum_probs=65.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhh---cCCCCChHHHHHH-
Q 006744 453 AIQCHVESGDILEACECHNKIIEMSQV-----PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG---NVASGPTEFKYAL- 523 (632)
Q Consensus 453 ll~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~p~~~~~~~- 523 (632)
+..++...+.++++++.|+...+.-.. ....++..|...|.+..++++|.-+..+..+ ..+.+.-...|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 444555555666666666655542111 1234566666777777777776655554432 2222211222322
Q ss_pred ----HHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHH----HHHHHHHHHhcCCHHHHHHHHHHH
Q 006744 524 ----TILHVCRSGEAEKIIEVLNEMTQEGC-PPNEVI----CSAIISGMCKHGTLEEARKVFTNL 579 (632)
Q Consensus 524 ----l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~m 579 (632)
|..++-..|....|.+..++..+..+ .-|..+ ...+.+.|...|+.+.|..-|+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 33445556666666666665443210 013333 345666677777777766655544
No 249
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.29 E-value=1.3 Score=37.66 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhhchhHHHHhhhhhh
Q 006744 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFF 616 (632)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~l~~~ 616 (632)
+..++..+...|++-+|.++.+.....+- +.-..++.+..+.+|........+++
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~------~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVDS------VPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccc------CCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33445555566666666665544322111 12234455554444444444444433
No 250
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.23 E-value=2.9 Score=39.74 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 006744 396 MALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441 (632)
Q Consensus 396 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 441 (632)
+|.++++.+.........++-.-+..+.+.++.+++.+++.+|...
T Consensus 105 ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 105 KALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444444444333334555555556666666677777777777654
No 251
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=1.6 Score=46.31 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=61.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH
Q 006744 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361 (632)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 361 (632)
.+.+.|++++|...|-+-... +.| ..+|.-|....++.+-..+++.+.+.|+. +...-..|+.+|.+.++.++
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 334455555555555443321 111 12344445555555555555555555543 33344455555555555555
Q ss_pred HHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHH
Q 006744 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM 438 (632)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 438 (632)
-.++.+... .|.- ..-....+..+.+.+-.++|..+-.+.... . ..+--.+-..+++++|++++..|
T Consensus 450 L~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~h----e---~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 450 LTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKKH----E---WVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhccC----H---HHHHHHHHHhcCHHHHHHHHhcC
Confidence 444443322 1110 001233333444444444444444333321 1 12222233456666666666554
No 252
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.42 Score=46.15 Aligned_cols=139 Identities=18% Similarity=0.066 Sum_probs=91.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 006744 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVK 429 (632)
Q Consensus 350 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 429 (632)
.+.+.+.|++..|...|+++...=- |...-+.++.... ..+ -..+++.+..+|.+.+++.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~-------------~~~~~~~ee~~~~-~~~------k~~~~lNlA~c~lKl~~~~ 274 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLE-------------YRRSFDEEEQKKA-EAL------KLACHLNLAACYLKLKEYK 274 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhh-------------ccccCCHHHHHHH-HHH------HHHHhhHHHHHHHhhhhHH
Confidence 4677888888888888887654210 1111111111111 111 2445888889999999999
Q ss_pred hHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHH-HHHHHHHH
Q 006744 430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS-VAAYNCLTKGLCKIGEID-AAMMLVRD 507 (632)
Q Consensus 430 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~-~A~~~~~~ 507 (632)
+|+..-......+ +.|....-.=.++|...|+++.|+..|+++++.. |+ ..+-+.|+.+-.+..+.. ...++|..
T Consensus 275 ~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 275 EAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888765 5677777777788899999999999999998854 43 444555555555544443 34677777
Q ss_pred Hhhc
Q 006744 508 CLGN 511 (632)
Q Consensus 508 ~~~~ 511 (632)
|...
T Consensus 352 mF~k 355 (397)
T KOG0543|consen 352 MFAK 355 (397)
T ss_pred Hhhc
Confidence 7654
No 253
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.19 E-value=0.35 Score=44.23 Aligned_cols=98 Identities=17% Similarity=0.237 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChH-HHHHHHH
Q 006744 449 SFSIAIQCHVESGDILEACECHNKIIEMSQV--PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE-FKYALTI 525 (632)
Q Consensus 449 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~ 525 (632)
.|+.-+.. .+.|++..|...|...++.... -....+-.|..++...|++++|..+|..+.+..+..|-. ..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 4566688888888777775322 123344557788888888888888888887766555443 4555567
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 006744 526 LHVCRSGEAEKIIEVLNEMTQE 547 (632)
Q Consensus 526 ~~~~~~g~~~~a~~~~~~m~~~ 547 (632)
....+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777788888888888888776
No 254
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=5.3 Score=41.99 Aligned_cols=324 Identities=12% Similarity=0.090 Sum_probs=171.1
Q ss_pred hCCCCcCHHhHH-----HHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCH--HHHHHHHHHHHHCC
Q 006744 231 KDLVEADVMAYV-----TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV--GKACDLLKDLVDSG 303 (632)
Q Consensus 231 ~~~~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g 303 (632)
..|++.+..-|. .+|+-+...+.+..|.++-..+...-.. ...+|.....-+.+..+. +++.+.+++=.+.-
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 346666665554 4567777788899999887766443222 256777777777766432 23333333322222
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC----CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----
Q 006744 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL----APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF----- 374 (632)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----- 374 (632)
. -+...|..+.......|+.+-|..+++.=...+. -.+..-+...+.-+...|+.+....++-.+.+.-.
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 2 2556777788878889999999988864322221 11333456666777788888887777766644311
Q ss_pred ------CccccHHHHHHHH--------hhhcccHHHHHHHHH--HHHhCCC-C-ChhHHHHHHHHHHhcCChh-------
Q 006744 375 ------SVAADLEKFFEFL--------VGKEERIMMALDVFE--ELKGKGY-S-SVPIYNILMGALLEIGEVK------- 429 (632)
Q Consensus 375 ------~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~--~~~~~~~-~-~~~~~~~li~~~~~~g~~~------- 429 (632)
+....+|..++.- +...++-.++...|. ....... . -..........+.+.....
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 1111111111110 001111111111111 0000000 0 0111222223333322211
Q ss_pred ---hHHHHHHHHhhC-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006744 430 ---KALYLFGKMRGL-NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505 (632)
Q Consensus 430 ---~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 505 (632)
+-+.+.+.+... |......+.+--+.-+...|+..+|.++-.++. .||-..|-.=+.+++..+++++-+++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 111122222211 223344455555666667777777777665543 467777777777788888887777666
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006744 506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576 (632)
Q Consensus 506 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 576 (632)
+... .+.-|...+.+|.+.|+.++|.+++.+.. +.. -.+.+|.+.|++.+|.++-
T Consensus 739 kskk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 739 KSKK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hccC-------CCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence 5422 23445567777788888888887775532 111 4667777778877777654
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.03 E-value=0.68 Score=36.85 Aligned_cols=92 Identities=16% Similarity=0.039 Sum_probs=68.2
Q ss_pred HhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH---HHHHHHHHHHHcCCH
Q 006744 387 LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL---SFSIAIQCHVESGDI 463 (632)
Q Consensus 387 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~g~~ 463 (632)
+.+..|+++.|++.|.+.....+.....||.-..++--.|+.++|+.=+++..+..-.-... .|..-...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 45677888889888888888777788889999999999999999998888877652122222 233333356678888
Q ss_pred HHHHHHHHHHHHCCC
Q 006744 464 LEACECHNKIIEMSQ 478 (632)
Q Consensus 464 ~~a~~~~~~~~~~~~ 478 (632)
+.|..-|+...+.|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888888777663
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.92 E-value=2.2 Score=42.68 Aligned_cols=165 Identities=12% Similarity=0.114 Sum_probs=95.8
Q ss_pred cCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 006744 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML 504 (632)
Q Consensus 425 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 504 (632)
..+...-.+.-++..+ +.||..+.-.++ +--......++.+++++..+.|-. .+..- ......|..-++
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~lg~s-~~~~~~g~~~e~--- 249 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----SLGKS-QFLQHHGHFWEA--- 249 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----hhchh-hhhhcccchhhh---
Confidence 3344444444444444 345554433333 223455678888888887765421 00000 000111211111
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG-CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 505 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
+ ......+-...=..+..++-+.|+.++|++.+++|.+.. ...+..+...|+.++...+.+.++..++.+-.+..
T Consensus 250 ~----~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 250 W----HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred h----hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 0 000112222222346666678899999999999998753 11245578899999999999999999999975433
Q ss_pred CCCCCChhhHHHHHHHHhhhch
Q 006744 584 LLTEANTIVYDEILIEHMKKKT 605 (632)
Q Consensus 584 ~~~~~~~~~~~~l~~~~~~~~~ 605 (632)
.|....+.|+..+...-..+|
T Consensus 326 -lpkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 326 -LPKSATICYTAALLKARAVGD 346 (539)
T ss_pred -CCchHHHHHHHHHHHHHhhcc
Confidence 456788999988876655433
No 257
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.91 E-value=2.9 Score=38.07 Aligned_cols=196 Identities=20% Similarity=0.129 Sum_probs=108.5
Q ss_pred HHhhhcccHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHH-HHHHcCC
Q 006744 386 FLVGKEERIMMALDVFEELKG--KGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ-CHVESGD 462 (632)
Q Consensus 386 ~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~-~~~~~g~ 462 (632)
..+...+++..+...+..... ........+......+...+++..+...+.........+ ......... .+...|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 145 (291)
T COG0457 67 LALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGD 145 (291)
T ss_pred HHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCC
Confidence 334444445555544444443 222244455555566666666666766666666543222 111222222 5667777
Q ss_pred HHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 006744 463 ILEACECHNKIIEMSQ--VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540 (632)
Q Consensus 463 ~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 540 (632)
++.+...+.+...... ......+......+...++.++|...+.......... ....+..+...+...++++.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~ 224 (291)
T COG0457 146 YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-DAEALLNLGLLYLKLGKYEEALEY 224 (291)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-chHHHHHhhHHHHHcccHHHHHHH
Confidence 7777777777654221 1123333333444566777777777777766542211 244555566666777777788877
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 541 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
+....... +.....+..+...+...|..+++...+....+...
T Consensus 225 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 225 YEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 77777652 22244455555555566677788877777776654
No 258
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.87 E-value=0.91 Score=43.21 Aligned_cols=130 Identities=17% Similarity=0.318 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh--cC----ChhHHHHHHHHHHhCC---CCcCHHhHHHHHHHHHhcCC-
Q 006744 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA--ER----NLDACLRVWEEMKKDL---VEADVMAYVTLIMGLCKGGR- 253 (632)
Q Consensus 184 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~- 253 (632)
+++...+++.|.+.|.+.+..+|-+..-.+.. .. ...+|.++|+.|++.. -.++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788899999898888776654433333 22 3457888899998764 12445556555543 2233
Q ss_pred ---hhHHHHHHHHHHHcCCcccHH--hHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006744 254 ---VVRGHELFREMKENGILIDRA--IYGVLIEGLVGEGK--VGKACDLLKDLVDSGYRADLGIYNSII 315 (632)
Q Consensus 254 ---~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li 315 (632)
.+.+..+|+.+.+.|+..+.. ....++..+..... +..+.++++.+.+.|++.....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 355666777777766654322 22222222211111 345666677777777666666555443
No 259
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.59 Score=45.16 Aligned_cols=63 Identities=16% Similarity=0.037 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 521 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
+..+..++.+.+++.+|++..++.+..+ ++|......-..+|...|+++.|+..|+++++..+
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 3345555555555556665555555553 44555555555555556666666666666655544
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.62 E-value=3.4 Score=37.58 Aligned_cols=157 Identities=18% Similarity=0.108 Sum_probs=89.2
Q ss_pred hhcccHHHHHHHHHHHHhCCCCChhHHHHHHH-HHHhcCChhhHHHHHHHHhhCCC--CcCHHHHHHHHHHHHHcCCHHH
Q 006744 389 GKEERIMMALDVFEELKGKGYSSVPIYNILMG-ALLEIGEVKKALYLFGKMRGLNL--EVNSLSFSIAIQCHVESGDILE 465 (632)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~g~~~~ 465 (632)
...+++..+.+.+.........+......... .+...|+++.|...+.+...... ......+......+...++.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (291)
T COG0457 106 EALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEE 185 (291)
T ss_pred HHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHH
Confidence 33344445555555544433222222222223 56677777777777777644211 1122333333444566777888
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545 (632)
Q Consensus 466 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 545 (632)
+...+....+.........+..+...+...++++.|...+......... ....+..+...+...+..+.+...+.+..
T Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 186 ALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--NAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--cHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888777776432213566677777777778888888888877654222 12333334444446667888888887777
Q ss_pred hC
Q 006744 546 QE 547 (632)
Q Consensus 546 ~~ 547 (632)
+.
T Consensus 264 ~~ 265 (291)
T COG0457 264 EL 265 (291)
T ss_pred Hh
Confidence 65
No 261
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.62 E-value=0.88 Score=39.31 Aligned_cols=94 Identities=19% Similarity=0.150 Sum_probs=67.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006744 491 GLCKIGEIDAAMMLVRDCLGNVASGPT---EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567 (632)
Q Consensus 491 ~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 567 (632)
-+.+.|++++|..-|..+++.++..+. .+.|..-..++.+.+.++.|++-..+.++.+ +........-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 466778888888888888776654443 2345555667778888888888888888775 323334444456788888
Q ss_pred CHHHHHHHHHHHHHCCCC
Q 006744 568 TLEEARKVFTNLRERKLL 585 (632)
Q Consensus 568 ~~~~A~~~~~~m~~~~~~ 585 (632)
++++|++-|+.+++.++.
T Consensus 183 k~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPS 200 (271)
T ss_pred hHHHHHHHHHHHHHhCcc
Confidence 999999999999888754
No 262
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=4.1 Score=38.27 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhh----CCCCcCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCH----
Q 006744 412 VPIYNILMGALLEIGEVKKALYLFGKMRG----LNLEVNSLSFSIAIQ-CHVESGDILEACECHNKIIEMSQVPSV---- 482 (632)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~p~~---- 482 (632)
..++-.....||+.|+-+.|++.+.+..+ .|.+.|...+.+-+. .|....-+.+-.+-.+.+.+.|...+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 44577777889999999988887766543 466777665554443 233333445555556666677766553
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006744 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512 (632)
Q Consensus 483 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 512 (632)
.+|..+- +....++.+|-.+|-+.+...
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHcccc
Confidence 3444433 234467889999888876543
No 263
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.46 E-value=2.7 Score=35.59 Aligned_cols=133 Identities=18% Similarity=0.191 Sum_probs=72.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHH---hHHHHH
Q 006744 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEA-DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA---IYGVLI 280 (632)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li 280 (632)
.|..-++ +.+.+..++|+.-|..+.+.|..- .+-..-.+.......|+...|...|+++-.....|-.. .-..-.
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3444333 456666777777777777665321 11111122334456677777777777776554433322 111112
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006744 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338 (632)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 338 (632)
-.+...|.++.+..-.+-+...+-..-...-..|.-+-.+.|++.+|.++|..+....
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 2345566677666666665554443344445556666667777777777777766543
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.46 E-value=0.89 Score=36.22 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=52.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcC
Q 006744 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV---ICSAIISGMCKHG 567 (632)
Q Consensus 491 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g 567 (632)
++...|+++.|++.|.+.+...+ .....||.-..++--.|+.++|++=+++..+..-..... .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P--~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAP--ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcc--cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34556666666666666554322 233456666666666666666666666666542111221 2333334566777
Q ss_pred CHHHHHHHHHHHHHCC
Q 006744 568 TLEEARKVFTNLRERK 583 (632)
Q Consensus 568 ~~~~A~~~~~~m~~~~ 583 (632)
+.+.|+.-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777776665
No 265
>PRK11906 transcriptional regulator; Provisional
Probab=94.41 E-value=3.2 Score=41.42 Aligned_cols=81 Identities=10% Similarity=0.012 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006744 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543 (632)
Q Consensus 464 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 543 (632)
.+|.++-++..+.+ .-|......+..++...|+++.|...|++.....+..++. |......+...|+.++|.+.+++
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~--~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL--YYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH--HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444433 2344444445554455555555555555554332222222 22233334445555555555555
Q ss_pred HHhC
Q 006744 544 MTQE 547 (632)
Q Consensus 544 m~~~ 547 (632)
..+.
T Consensus 398 alrL 401 (458)
T PRK11906 398 SLQL 401 (458)
T ss_pred Hhcc
Confidence 4443
No 266
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.37 E-value=4 Score=37.24 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=34.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCH---hcHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744 314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDF---STVNPLLVCCAEMGRMDNFFKLLAQMEK 371 (632)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 371 (632)
+.+.|.+.|.+..|..-+++|.+. ..-+. ..+-.+..+|...|-.++|...-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 345677777777777777777765 22122 2344455667777776666665544433
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=4.4 Score=38.21 Aligned_cols=152 Identities=10% Similarity=0.014 Sum_probs=78.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc---CCcccHHhHHHHHHHHHhcCCHHH
Q 006744 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN---GILIDRAIYGVLIEGLVGEGKVGK 291 (632)
Q Consensus 215 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~ 291 (632)
..|+..+|-..++++.+. .+.|..+++..=++|.-+|+.+.-...++++.-. +++....+...+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 455666666666666654 2445566666666666666666666666665443 222112222233334455666666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC---CCHhcHHHHHHHHHhcCChhHHHHHHHH
Q 006744 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA---PDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368 (632)
Q Consensus 292 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 368 (632)
|++.-++..+.+.. |...-.++...+-.+|++.++.++..+-...--. .-..-|--..-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 66666666554432 5555555666666666666666665543211000 0011121222233444666666666654
No 268
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=4.7 Score=37.54 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=40.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302 (632)
Q Consensus 245 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (632)
.......|++.+|..+|......... +...-..++.+|...|+.+.|..++..+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 44556678888888888887776444 4556667778888888888888888776653
No 269
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.90 E-value=3.5 Score=34.89 Aligned_cols=123 Identities=16% Similarity=0.123 Sum_probs=61.8
Q ss_pred hhcccHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH-HHHHHHH--HHHHcCCH
Q 006744 389 GKEERIMMALDVFEELKGKGYSS--VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL-SFSIAIQ--CHVESGDI 463 (632)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~--~~~~~g~~ 463 (632)
.+.+..++|..-|..+.+.|..+ +-.--.+.....+.|+...|...|++.-...-.|-.. -...|-. .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455556666666665555442 2222233344556677777777777765543333222 1111111 23345556
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 464 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 511 (632)
+......+-+...+-..-...-..|.-+-.+.|++.+|.+.|+.+..+
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 655555554443332222333445555556677777777777666554
No 270
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.68 E-value=11 Score=39.91 Aligned_cols=182 Identities=12% Similarity=0.046 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhCCCCcCHHhHHHHH----HH-HHhcCChhHHHHHHHHHHh-------CCCCcCHHhHHHHHHHHHhc
Q 006744 184 IAEMLEILEKMRRNLCKPDVFAYTAMI----RV-LAAERNLDACLRVWEEMKK-------DLVEADVMAYVTLIMGLCKG 251 (632)
Q Consensus 184 ~~~a~~~~~~m~~~~~~~~~~~~~~li----~~-~~~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~li~~~~~~ 251 (632)
...|...++...+.|. ...-..+. .+ +....+.+.|+..|+...+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 3456666666555532 22211111 12 3455677788888777765 33 233455556666554
Q ss_pred C-----ChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH--ccCC
Q 006744 252 G-----RVVRGHELFREMKENGILIDRAIYGVLIEGLVG-EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC--RVKQ 323 (632)
Q Consensus 252 g-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~ 323 (632)
. +.+.|..++.+..+.|.. +...+-..+..... ..+...|.++|....+.|.. ....+..++.... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCC
Confidence 3 456677777777776644 44433333322222 24567777777777777653 3332222222222 3345
Q ss_pred HHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006744 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375 (632)
Q Consensus 324 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 375 (632)
.+.|..++.+..+.| .|...--...+..+.. +.++.+.-.+..+...|.+
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 677777777777766 2221111222233333 5666666666665555543
No 271
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.58 E-value=6.9 Score=37.20 Aligned_cols=134 Identities=10% Similarity=0.059 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCcCH-----HhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCC
Q 006744 206 YTAMIRVLAAERNLDACLRVWEEMKKD--------LVEADV-----MAYVTLIMGLCKGGRV---VRGHELFREMKENGI 269 (632)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p~~-----~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~ 269 (632)
|+.-...+.+..+++.|..++++..+. ...++. .++..++.+|...+.. ++|..+++.+.....
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~ 118 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG 118 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC
Confidence 555445444443777777766654332 112232 3566677777776654 455566666644322
Q ss_pred cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH---HccCCHHHHHHHHHHHHhCCCCCC
Q 006744 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL---CRVKQFDKAYKLFEVTVQDDLAPD 342 (632)
Q Consensus 270 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~p~ 342 (632)
. ...++..-+..+.+.++.+++.+++.+|+..-.. ....+..++..+ .. .....|...++.+....+.|.
T Consensus 119 ~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 119 N-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred C-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCC
Confidence 2 3556656667777788888888888888875221 334444444444 33 223455555655554444433
No 272
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.40 E-value=2.9 Score=34.44 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=25.6
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 529 CRSGEAEKIIEVLNEMTQEGCPP---NEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 529 ~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
.+.|++++|++.|+.+... ++- ....--.|+.+|.+.|++++|...+++.++..+
T Consensus 21 l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3444555555555554443 111 122333445555555555555555555555543
No 273
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.38 E-value=4.5 Score=34.50 Aligned_cols=31 Identities=10% Similarity=0.181 Sum_probs=17.1
Q ss_pred HHHHHhCCCCcCHHhHHHHHHHHHhcCChhH
Q 006744 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDA 221 (632)
Q Consensus 191 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 221 (632)
+..+.+.++.++...|..+++.+.+.|++..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444445555666666666666666665433
No 274
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.19 E-value=6.2 Score=35.56 Aligned_cols=148 Identities=12% Similarity=0.038 Sum_probs=82.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 006744 450 FSIAIQCHVESGDILEACECHNKIIEM--SQVPS--VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525 (632)
Q Consensus 450 ~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 525 (632)
|......|...|..+.|-..+++.-+. ++.|+ ...|..-+..+...++...|.+++. ...
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~g----------------k~s 157 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYG----------------KCS 157 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHH----------------Hhh
Confidence 444455677777777766666554431 23343 2233333333333333333333333 345
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCCChhhHHHHHHH
Q 006744 526 LHVCRSGEAEKIIEVLNEMTQE----GCPPNE-VICSAIISGMCKHGTLEEARKVFTNLRERK-LLTEANTIVYDEILIE 599 (632)
Q Consensus 526 ~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~~~l~~~ 599 (632)
..+.+..++++|-..+.+-... .-.++. ..|...|-.+....++..|.+.++.--..+ ...+.+..+..+|+..
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 5566666666665544432211 111222 345566667778889999999998865443 3333456678888887
Q ss_pred HhhhchhHHHHhhhh
Q 006744 600 HMKKKTADLVLSGLK 614 (632)
Q Consensus 600 ~~~~~~~~~v~~~l~ 614 (632)
|-. +|.+.+-+.+.
T Consensus 238 yd~-gD~E~~~kvl~ 251 (308)
T KOG1585|consen 238 YDE-GDIEEIKKVLS 251 (308)
T ss_pred hcc-CCHHHHHHHHc
Confidence 766 66666666554
No 275
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.16 E-value=5.1 Score=34.93 Aligned_cols=99 Identities=14% Similarity=0.050 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHhHHH
Q 006744 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL--SFSIAIQCHVESGDILEACECHNKIIEM---SQVPSVAAYNC 487 (632)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~ 487 (632)
..+..+...|++.|+.++|++.|.++.+....+... .+-.+|......+++..+.....++... +..++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 457888888999999999999999888765444433 4667777788888888888877766543 22222111111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHhhc
Q 006744 488 LTK--GLCKIGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 488 li~--~~~~~g~~~~A~~~~~~~~~~ 511 (632)
... .+...+++.+|-+.|-+....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 111 233567888888877665433
No 276
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.10 E-value=8.4 Score=36.79 Aligned_cols=153 Identities=14% Similarity=0.177 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHCCCC---CCHHhHHHHHHHHHhcCC-
Q 006744 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE--SG----DILEACECHNKIIEMSQV---PSVAAYNCLTKGLCKIGE- 497 (632)
Q Consensus 428 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~- 497 (632)
+++.+.+++.|.+.|++-+..+|.+....... .. ...++..+|+.|.+...- ++-..+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677788888877777666553333322 22 245678888888875322 333444444333 3333
Q ss_pred ---HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---
Q 006744 498 ---IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG---EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT--- 568 (632)
Q Consensus 498 ---~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~--- 568 (632)
.+++..+|+.+.+.+-.+-|..-+.+-+.+++... ....+.++++.+.+.|++.....|..++-...-.+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 24556666666553222233333333344443221 255788899999999988888777766544433333
Q ss_pred -HHHHHHHHHHHHHC
Q 006744 569 -LEEARKVFTNLRER 582 (632)
Q Consensus 569 -~~~A~~~~~~m~~~ 582 (632)
.+...++.+.+.+.
T Consensus 236 ~~~~i~ev~~~L~~~ 250 (297)
T PF13170_consen 236 IVEEIKEVIDELKEQ 250 (297)
T ss_pred HHHHHHHHHHHHhhC
Confidence 33344444444443
No 277
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.00 E-value=2.3 Score=43.29 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=59.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHH
Q 006744 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA 292 (632)
Q Consensus 213 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 292 (632)
..+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 446677777766655432 455677777777777777777777665433 44555566666666655
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 006744 293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333 (632)
Q Consensus 293 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 333 (632)
..+-....+.|.. |.. .-+|...|+++++.+++.+
T Consensus 712 ~~la~~~~~~g~~-N~A-----F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQGKN-NLA-----FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhccc-chH-----HHHHHHcCCHHHHHHHHHh
Confidence 5555555555543 222 2245556777777666654
No 278
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=92.89 E-value=0.36 Score=50.12 Aligned_cols=17 Identities=0% Similarity=-0.054 Sum_probs=8.1
Q ss_pred CHhcHHHHHHHHHhcCC
Q 006744 342 DFSTVNPLLVCCAEMGR 358 (632)
Q Consensus 342 ~~~~~~~ll~~~~~~~~ 358 (632)
|..+|..=|+.+++..+
T Consensus 837 Na~afgF~is~L~kL~d 853 (1102)
T KOG1924|consen 837 NAQAFGFNISFLCKLRD 853 (1102)
T ss_pred cchhhccchHHHHhhcc
Confidence 34455444555554443
No 279
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.88 E-value=0.34 Score=30.69 Aligned_cols=34 Identities=3% Similarity=-0.134 Sum_probs=15.4
Q ss_pred HHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHH
Q 006744 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNI 417 (632)
Q Consensus 384 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 417 (632)
+...|...|++++|+++|+++.+..+.+...|..
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 3334444444444444444444444444444433
No 280
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.87 E-value=11 Score=37.36 Aligned_cols=63 Identities=14% Similarity=0.090 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEV---NSLSFSIAIQCHVESGDILEACECHNKIIE 475 (632)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 475 (632)
.+|..++..+.+.|.++.|...+..+...+... .......-....-..|+..+|...++...+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555554432111 122222223334444555555555555544
No 281
>PRK11906 transcriptional regulator; Provisional
Probab=92.85 E-value=11 Score=37.67 Aligned_cols=148 Identities=11% Similarity=0.064 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHhC-CCCcC-HHhHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhc
Q 006744 183 RIAEMLEILEKMRRN-LCKPD-VFAYTAMIRVLAA---------ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251 (632)
Q Consensus 183 ~~~~a~~~~~~m~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 251 (632)
..+.|..+|.+.... ...|+ ...|..+...+.. ..+..+|.++-+...+.+ .-|..+...+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 345677777776611 23343 3333333332221 234456777777777765 45777777777777777
Q ss_pred CChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCCHHHHHHH
Q 006744 252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA-DLGIYNSIIGGLCRVKQFDKAYKL 330 (632)
Q Consensus 252 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~ 330 (632)
++++.|..+|++....+.. ...+|....-.+.-.|+.++|.+.+++..+..+.. ........++.|+..+ .++|+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 7888888888888776543 45555555556666788888888888866653221 1223333344665544 5666666
Q ss_pred HHH
Q 006744 331 FEV 333 (632)
Q Consensus 331 ~~~ 333 (632)
|-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 643
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.82 E-value=1.8 Score=40.35 Aligned_cols=77 Identities=23% Similarity=0.213 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCcccHHhHHHH
Q 006744 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE-----NGILIDRAIYGVL 279 (632)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~l 279 (632)
++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44555555555555555555555555443 33555555555555555555555555555433 4555555554444
Q ss_pred HHH
Q 006744 280 IEG 282 (632)
Q Consensus 280 i~~ 282 (632)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 283
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.82 E-value=0.41 Score=30.31 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 276 YGVLIEGLVGEGKVGKACDLLKDLVDS 302 (632)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (632)
+..+...|...|++++|+++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444455555555555444444
No 284
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.46 E-value=32 Score=41.86 Aligned_cols=318 Identities=11% Similarity=0.029 Sum_probs=162.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHH----HHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006744 243 TLIMGLCKGGRVVRGHELFREM----KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318 (632)
Q Consensus 243 ~li~~~~~~g~~~~a~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 318 (632)
++..+-.+.+.+.+|.-.++.- ++. ......|..+...|+..++.|....+...... +. ....-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~-sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DP-SLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Cc-cHHHHHHHH
Confidence 3444556677888888888773 222 11234555666688888988888877764222 11 223345566
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHH
Q 006744 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL 398 (632)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 398 (632)
...|++..|...|+.+.+.+. +...+++.++......|.++......+.......+......+.-+.+--+.++++..+
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 778999999999998886542 2366777777777777777776665554444333333334444444445566666665
Q ss_pred HHHHHHHhCCCCChhHHHHH--HHHHHhcC--ChhhHHHHHHHHhhCCCCc---------CHHHHHHHHHHHHHcCCHHH
Q 006744 399 DVFEELKGKGYSSVPIYNIL--MGALLEIG--EVKKALYLFGKMRGLNLEV---------NSLSFSIAIQCHVESGDILE 465 (632)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~m~~~~~~p---------~~~t~~~ll~~~~~~g~~~~ 465 (632)
.... .. +...|... +....+.. +.-.-.+..+.+.+.-+.| -...|..++....-. +
T Consensus 1539 ~~l~---~~---n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----e 1608 (2382)
T KOG0890|consen 1539 SYLS---DR---NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----E 1608 (2382)
T ss_pred hhhh---cc---cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----H
Confidence 5544 11 22233332 22222221 1111112222222211111 011222332221111 0
Q ss_pred HHHHHHHHHHCCCCCC------HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC----C-CCChHHHHHHHHHHHHHcCCH
Q 006744 466 ACECHNKIIEMSQVPS------VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV----A-SGPTEFKYALTILHVCRSGEA 534 (632)
Q Consensus 466 a~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~-~~p~~~~~~~l~~~~~~~g~~ 534 (632)
-....+... +..++ ..-|..-+..-....+..+-+--+++.+-.. + ..--..+|-...+..-+.|.+
T Consensus 1609 l~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1609 LENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 111111111 11111 1112222221111111222222222211111 1 112334576677777778999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 535 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
+.|...+-.+.+.+ . +..+--...-+...|+...|+.++++-.+...
T Consensus 1687 q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 99988887777765 2 34555667778899999999999999887653
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.20 E-value=1.8 Score=40.34 Aligned_cols=81 Identities=20% Similarity=0.143 Sum_probs=66.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhhHH
Q 006744 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD-----SGYRADLGIYN 312 (632)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~ 312 (632)
..++..++..+...|+++.+.+.++++...... +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 346677788888889999999999999887655 888999999999999999999999988775 58888888887
Q ss_pred HHHHHHH
Q 006744 313 SIIGGLC 319 (632)
Q Consensus 313 ~li~~~~ 319 (632)
.......
T Consensus 232 ~y~~~~~ 238 (280)
T COG3629 232 LYEEILR 238 (280)
T ss_pred HHHHHhc
Confidence 7766643
No 286
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.15 E-value=19 Score=38.44 Aligned_cols=151 Identities=9% Similarity=0.096 Sum_probs=84.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCc---CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh
Q 006744 174 VPELMDSQGRIAEMLEILEKMRRNLCKP---DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250 (632)
Q Consensus 174 l~~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 250 (632)
-++.+.+.+.+++|+.+-+..... .+ -...+..+|..+.-.|++++|-.+.-.|.. -+..-|..-+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcc
Confidence 344555556666666665544332 22 345677888888999999999888888874 356666666666666
Q ss_pred cCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHH-----------------HCCCCCCHhhHHH
Q 006744 251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV-----------------DSGYRADLGIYNS 313 (632)
Q Consensus 251 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----------------~~g~~~~~~~~~~ 313 (632)
.++....-.+ +.......+..+|..++..+.. .+...-.++..+.. +.... +...-..
T Consensus 436 ~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~L~e~ 510 (846)
T KOG2066|consen 436 LDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STALLEV 510 (846)
T ss_pred ccccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chhHHHH
Confidence 6655433222 2222223455567666666655 22222222111100 00011 2223334
Q ss_pred HHHHHHccCCHHHHHHHHHHHH
Q 006744 314 IIGGLCRVKQFDKAYKLFEVTV 335 (632)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~ 335 (632)
|+..|...+++..|+.++-...
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 7777778888888887776554
No 287
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.12 E-value=7.5 Score=33.83 Aligned_cols=94 Identities=13% Similarity=0.158 Sum_probs=63.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006744 489 TKGLCKIGEIDAAMMLVRDCLGNVASG-PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567 (632)
Q Consensus 489 i~~~~~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 567 (632)
...+..+|++++|...++..+...... -....--.|.......|.+++|+.+++...+.++ .......-.+++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 456778888888888888766431110 1111111255566677899999998887766543 2334455677888999
Q ss_pred CHHHHHHHHHHHHHCCC
Q 006744 568 TLEEARKVFTNLRERKL 584 (632)
Q Consensus 568 ~~~~A~~~~~~m~~~~~ 584 (632)
+.++|+.-|+..++.+.
T Consensus 174 ~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 174 DKQEARAAYEKALESDA 190 (207)
T ss_pred chHHHHHHHHHHHHccC
Confidence 99999999999988873
No 288
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.03 E-value=10 Score=35.32 Aligned_cols=145 Identities=9% Similarity=0.081 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh-CCCCcCHHhHHHHHHHHHhc-C-ChhHHHHHHHHHHH-cCCcccHHhHHHHHH
Q 006744 206 YTAMIRVLAAERNLDACLRVWEEMKK-DLVEADVMAYVTLIMGLCKG-G-RVVRGHELFREMKE-NGILIDRAIYGVLIE 281 (632)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~-g-~~~~a~~~~~~m~~-~~~~p~~~~~~~li~ 281 (632)
|..|+. ++..+.+|+++|+.... ..+--|......+++..... + ....--++.+-+.. .|-.++..+...+++
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555443 34456677777774332 22445777777777776652 2 22222333333332 345567778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHccCCHHHHHHHHHH-----HHhCCCCCCHhcHHHHHHHH
Q 006744 282 GLVGEGKVGKACDLLKDLVDS-GYRADLGIYNSIIGGLCRVKQFDKAYKLFEV-----TVQDDLAPDFSTVNPLLVCC 353 (632)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~~~~p~~~~~~~ll~~~ 353 (632)
.+++.+++.+-.++++..... +..-|...|..+|....+.|+..-..++.++ +.+.++..+...-..+-+.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 888888888888888877765 5666888888888888888888877777654 22344554444444443333
No 289
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.86 E-value=3.5 Score=33.98 Aligned_cols=52 Identities=10% Similarity=0.130 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHhCCC--CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006744 182 GRIAEMLEILEKMRRNLC--KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233 (632)
Q Consensus 182 g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 233 (632)
|++++|.+.|+.+..+-+ .-...+--.|+.+|.+.+++++|...+++.++..
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 444555555555544311 1122334445555666666666666666665543
No 290
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.82 E-value=11 Score=35.05 Aligned_cols=163 Identities=15% Similarity=0.102 Sum_probs=80.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHH---------HHHHH---HhCCC
Q 006744 132 PTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLE---------ILEKM---RRNLC 199 (632)
Q Consensus 132 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~---------~~~~m---~~~~~ 199 (632)
...|+++|-.+..+.|-+- +-+.++.++....+...|..++....-+ ...|+. .+++- --.++
T Consensus 149 s~KA~ELFayLv~hkgk~v---~~~~~ie~lwpe~D~kka~s~lhTtvyq--lRKaLs~L~~ne~vts~d~~Ykld~~~~ 223 (361)
T COG3947 149 SRKALELFAYLVEHKGKEV---TSWEAIEALWPEKDEKKASSLLHTTVYQ--LRKALSRLNANEAVTSQDRKYKLDAGLP 223 (361)
T ss_pred hhHHHHHHHHHHHhcCCcc---cHhHHHHHHccccchhhHHHHHHHHHHH--HHHHhchhccCceEEEcCCceEEecCCc
Confidence 4579999999988776433 3466888888888888888776644311 000100 00000 01123
Q ss_pred CcCHHhHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCcC----------------HHhHHHHHHHHHhcCChhHHHHHHH
Q 006744 200 KPDVFAYTAMIRVLAA-ERNLDACLRVWEEMKKDLVEAD----------------VMAYVTLIMGLCKGGRVVRGHELFR 262 (632)
Q Consensus 200 ~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~ 262 (632)
.-|+.-|...++..-. +-.++++.++....+..-++-. ..+++.....|..+|.+.+|.++.+
T Consensus 224 k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~q 303 (361)
T COG3947 224 KYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQ 303 (361)
T ss_pred cccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3444445554443322 2234444444444322111100 1122333445555566666666655
Q ss_pred HHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300 (632)
Q Consensus 263 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 300 (632)
.....+. .+...+-.|+..+...||--.|.+-++.+.
T Consensus 304 r~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 304 RALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 5555432 245555555566666665555555554443
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.73 E-value=6.8 Score=33.03 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=26.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744 458 VESGDILEACECHNKIIEMSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 458 ~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 511 (632)
.+.++.+.+..++..+.-.... +...++. ...+...|++++|+++|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhcc
Confidence 3455666666666666543211 1122222 22345566666666666665443
No 292
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.60 E-value=18 Score=37.25 Aligned_cols=121 Identities=13% Similarity=0.125 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHhHHHHH
Q 006744 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV--PSVAAYNCLT 489 (632)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~li 489 (632)
...|+.-+.--.+.|+++.+.-+|++..-- +.-=...|-..+.-....|+.+.|..++....+-..+ |....+.+.+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 445666677777777777777777666421 1111122333333333447777776666655543332 2222222222
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHH-HHHHHHHHcCCHHHHH
Q 006744 490 KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA-LTILHVCRSGEAEKII 538 (632)
Q Consensus 490 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~ 538 (632)
.-..|+++.|..+++.+.... |+..... .-+....+.|+.+.+.
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhh
Confidence 234567777777777766543 3322211 1122333556665555
No 293
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.53 E-value=9.4 Score=33.78 Aligned_cols=199 Identities=13% Similarity=0.060 Sum_probs=110.5
Q ss_pred hhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 006744 389 GKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468 (632)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 468 (632)
-..|-+.-|.--|.......+.-..+||-+.-.+...|+++.|.+.|+...+....-+-...|.-| ++--.|++..|.+
T Consensus 76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~ 154 (297)
T COG4785 76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQD 154 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHH
Confidence 344555666666666666666667788888888888999999999988887754222222222222 2334677888877
Q ss_pred HHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHH-HHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744 469 CHNKIIEMSQV-PSVAAYNCLTKGLCKIGEIDAAMMLV-RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546 (632)
Q Consensus 469 ~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 546 (632)
-+...-+.... |-...|-.++. ..-+..+|..-+ ++..+ .|..-|...|..+.-. +.. ...+++++..
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~-----~d~e~WG~~iV~~yLg-kiS-~e~l~~~~~a 224 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK-----SDKEQWGWNIVEFYLG-KIS-EETLMERLKA 224 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh-----ccHhhhhHHHHHHHHh-hcc-HHHHHHHHHh
Confidence 77666654322 22223322222 233455555433 33221 2222333223332211 110 1122222222
Q ss_pred CCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhh
Q 006744 547 EGCPPN-------EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602 (632)
Q Consensus 547 ~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~ 602 (632)
- -..+ ..||-.|.+-+...|+.++|..+|+-.+..++- +.+-|...+-+.++
T Consensus 225 ~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy---nfVE~RyA~~EL~~ 283 (297)
T COG4785 225 D-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY---NFVEHRYALLELSL 283 (297)
T ss_pred h-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHH
Confidence 1 1111 457888889999999999999999999887764 44455555555544
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.27 E-value=0.3 Score=28.85 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=25.2
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChhhHH
Q 006744 401 FEELKGKGYSSVPIYNILMGALLEIGEVKKAL 432 (632)
Q Consensus 401 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 432 (632)
|++..+.++.+..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45556666668888999999999999988875
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.04 E-value=0.58 Score=28.03 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744 555 ICSAIISGMCKHGTLEEARKVFTNLR 580 (632)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 580 (632)
+|..|...|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677888888888888888888744
No 296
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.01 E-value=0.53 Score=28.19 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 006744 485 YNCLTKGLCKIGEIDAAMMLVRDC 508 (632)
Q Consensus 485 ~~~li~~~~~~g~~~~A~~~~~~~ 508 (632)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666676666666663
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.76 E-value=4 Score=35.59 Aligned_cols=60 Identities=8% Similarity=0.072 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC--HHhHHHHHHHHHhcCChhHHHHHHHHH
Q 006744 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD--VMAYVTLIMGLCKGGRVVRGHELFREM 264 (632)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m 264 (632)
.+..+...|++.|+.+.|++.|.++.+....+. ...+-.+|......+++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345555555555555555555555554432221 223344444445555555555544443
No 298
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.65 E-value=16 Score=35.02 Aligned_cols=232 Identities=14% Similarity=0.087 Sum_probs=109.2
Q ss_pred hcCChhHHHHHHHHHHhCC--CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCc---ccHHhHHHHHHHHHhcC
Q 006744 215 AERNLDACLRVWEEMKKDL--VEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN--GIL---IDRAIYGVLIEGLVGEG 287 (632)
Q Consensus 215 ~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~---p~~~~~~~li~~~~~~g 287 (632)
...+.++|+..|.+....- ..--..+|..+..+.++.|.+++++..--.-++. ... --...|..+..++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666665544321 0112345666677777777776665432211110 000 01224444555555555
Q ss_pred CHHHHHHHHHHHHHC-CCCC---CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-----CCCCHhcHHHHHHHHHhcCC
Q 006744 288 KVGKACDLLKDLVDS-GYRA---DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD-----LAPDFSTVNPLLVCCAEMGR 358 (632)
Q Consensus 288 ~~~~a~~~~~~m~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~ 358 (632)
++.+++.+-..-... |..+ .-...-+|..++.-.+.++++++.|+...+-. .......|..+-..|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 555555554443321 1111 11223335566666667777777777655321 11223456666666666677
Q ss_pred hhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCChhhHHHHH
Q 006744 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS---SVPIYNILMGALLEIGEVKKALYLF 435 (632)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 435 (632)
++++.-+..+..+. .+...-.++. ...+.-.|..++-..|..-.|.+.-
T Consensus 178 ~~Kal~f~~kA~~l----------------------------v~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C 229 (518)
T KOG1941|consen 178 YEKALFFPCKAAEL----------------------------VNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECC 229 (518)
T ss_pred hhHHhhhhHhHHHH----------------------------HHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 76666555443221 1000000000 0001122334455566666665555
Q ss_pred HHHhh----CCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744 436 GKMRG----LNLEV-NSLSFSIAIQCHVESGDILEACECHNKII 474 (632)
Q Consensus 436 ~~m~~----~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 474 (632)
++..+ .|-.+ -......+.+.|...|+.+.|+.-|+...
T Consensus 230 ~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 230 EEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 55432 23121 12234455666777777777777666554
No 299
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.53 E-value=26 Score=37.14 Aligned_cols=134 Identities=12% Similarity=0.057 Sum_probs=84.6
Q ss_pred HHhHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh-cCChhHHHHHHHHHHHcCCcccHHhH
Q 006744 203 VFAYTAMIRVLAAER-----NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK-GGRVVRGHELFREMKENGILIDRAIY 276 (632)
Q Consensus 203 ~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~ 276 (632)
.....-+..+|.+.. +.+.|+.+|...-+.| .|+...+-..+.-... ..+...|.++|....+.|.. ....+
T Consensus 288 ~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~ 365 (552)
T KOG1550|consen 288 PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYR 365 (552)
T ss_pred CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHH
Confidence 335666667776643 6778999999988887 4555544333333333 24678999999999998865 33333
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006744 277 GVLIEGLV--GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340 (632)
Q Consensus 277 ~~li~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 340 (632)
..++.... -..+.+.|..++.+..+.|. |....-...+..+.. +.++.+.-.+..+.+.|..
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 33332222 34578999999999999873 332222233444444 7788887777777666543
No 300
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.53 E-value=0.066 Score=45.03 Aligned_cols=53 Identities=9% Similarity=0.210 Sum_probs=25.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 006744 280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332 (632)
Q Consensus 280 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 332 (632)
+..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444445555555555555544433345555555555555555555555444
No 301
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.46 E-value=21 Score=36.02 Aligned_cols=182 Identities=10% Similarity=0.047 Sum_probs=122.6
Q ss_pred CccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHH
Q 006744 375 SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI 454 (632)
Q Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 454 (632)
..+......++..++......-.+.+..+|..-+. +-..|-.++.+|... ..+.-..+|+++.+.. -|......-+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHH
Confidence 34555666777788888888888888888877653 445688888888888 5577888888888753 4555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 006744 455 QCHVESGDILEACECHNKIIEMSQVP-----SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529 (632)
Q Consensus 455 ~~~~~~g~~~~a~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 529 (632)
..+...++.+.+..+|.++...-+.. -...|..|...- ..+.|..+.+..++....+...-.+.+.-+-..|.
T Consensus 139 a~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 139 ADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55555588888888888887653321 123444444321 34677777777777766666666666776777777
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006744 530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563 (632)
Q Consensus 530 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 563 (632)
...++++|++++..+.+.. ..|...-..++.-+
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 7788888888888777764 44554444555443
No 302
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.38 E-value=30 Score=37.63 Aligned_cols=199 Identities=12% Similarity=-0.020 Sum_probs=88.1
Q ss_pred hhhcccHHHHHHHHHHHHhCCCC--------ChhHHHHHHH-HHHhcCChhhHHHHHHHHhhC----CCCcCHHHHHHHH
Q 006744 388 VGKEERIMMALDVFEELKGKGYS--------SVPIYNILMG-ALLEIGEVKKALYLFGKMRGL----NLEVNSLSFSIAI 454 (632)
Q Consensus 388 ~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~p~~~t~~~ll 454 (632)
.....++.+|..++.++...-.. -...|+.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34455666666666554322111 0112333322 223356667777666655443 1233444555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH-----HHHHhcCCH--HHHHHHHHHHhhc-----CCCCChHHHHH
Q 006744 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT-----KGLCKIGEI--DAAMMLVRDCLGN-----VASGPTEFKYA 522 (632)
Q Consensus 455 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li-----~~~~~~g~~--~~A~~~~~~~~~~-----~~~~p~~~~~~ 522 (632)
.+..-.|++++|..+.....+..-.-+...+.... ..+...|+. .+....|...... ....+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 66666777777777766665542223333322221 224455532 2222223222111 11112223333
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744 523 LTILHVCRS-GEAEKIIEVLNEMTQEGCPPNEVIC--SAIISGMCKHGTLEEARKVFTNLRERKLLT 586 (632)
Q Consensus 523 ~l~~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 586 (632)
.+..++.+. +...++..-++--......|-...+ ..|+......|+.++|...++++......+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 344444431 1112222222222221111111112 255666667788888887777776665444
No 303
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.92 E-value=0.43 Score=28.19 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=22.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006744 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573 (632)
Q Consensus 542 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 573 (632)
++.++.. |-|...|..|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4444443 667778888888888888888875
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.75 E-value=11 Score=31.74 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHHhH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHH
Q 006744 182 GRIAEMLEILEKMRRNLCKPDVFAY-TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260 (632)
Q Consensus 182 g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 260 (632)
++.+++..+++.+.-. .|..... ..-...+.+.|++.+|+.+|+++.+.. |.......|+..|....+-..-...
T Consensus 24 ~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr~~ 99 (160)
T PF09613_consen 24 GDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWRRY 99 (160)
T ss_pred CChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHHHH
Confidence 4445555555555442 2322221 112233556777777777777765542 3333334444444433333333333
Q ss_pred HHHHHHcCC
Q 006744 261 FREMKENGI 269 (632)
Q Consensus 261 ~~~m~~~~~ 269 (632)
-+++.+.+.
T Consensus 100 A~evle~~~ 108 (160)
T PF09613_consen 100 ADEVLESGA 108 (160)
T ss_pred HHHHHhcCC
Confidence 344444443
No 305
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.66 E-value=4.9 Score=37.61 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=57.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006744 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA--SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558 (632)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 558 (632)
...+...++..-....+++.++.++-++..... ..++...| .+.-++..=+.++++.++..=++.|+-||..++..
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~--~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH--TWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH--HHHHHHHccChHHHHHHHhCcchhccccchhhHHH
Confidence 344444444444445566666665555432211 01221111 12223333456677777777777777777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744 559 IISGMCKHGTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 559 l~~~~~~~g~~~~A~~~~~~m~~~~~~ 585 (632)
+++.+.+.+++.+|..+...|......
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~qe~~ 167 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQEAF 167 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 777777777777777776666655443
No 306
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.50 E-value=15 Score=32.66 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=17.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303 (632)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 303 (632)
..+||.|.--+...|+++.|.+.|+...+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD 129 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 129 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC
Confidence 3455555555556666666666666655543
No 307
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.41 E-value=35 Score=36.85 Aligned_cols=192 Identities=13% Similarity=0.037 Sum_probs=89.8
Q ss_pred hhcccHHHHHHHHHHHHhCCCC-------C--hhHHHHHHHHHHhcCChhhHHHHHH--------HHhhCCCCcCHHHHH
Q 006744 389 GKEERIMMALDVFEELKGKGYS-------S--VPIYNILMGALLEIGEVKKALYLFG--------KMRGLNLEVNSLSFS 451 (632)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~-------~--~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~t~~ 451 (632)
+-.+++..|...++.+.+.... . ..++-...-.+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 4567777777777776643211 1 2222223333445688888888886 444444444444443
Q ss_pred HHHH--HHHHcC--CHHH--HHHHHHHHHHC-CCCC--CHHhHHHH-HHHHHhc--CCHHHHHHHHHHHhhcC--CCCCh
Q 006744 452 IAIQ--CHVESG--DILE--ACECHNKIIEM-SQVP--SVAAYNCL-TKGLCKI--GEIDAAMMLVRDCLGNV--ASGPT 517 (632)
Q Consensus 452 ~ll~--~~~~~g--~~~~--a~~~~~~~~~~-~~~p--~~~~~~~l-i~~~~~~--g~~~~A~~~~~~~~~~~--~~~p~ 517 (632)
.+=. .+...+ +.++ +.++++.+... .-.+ +..++..+ +.++... -...++...+.+.++.. ..+.+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 3211 122222 2222 55666655432 1122 23333333 3333221 12235555555444332 11222
Q ss_pred H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C--CHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHH
Q 006744 518 E---FKYALTILHVCRSGEAEKIIEVLNEMTQEGCP-P--NEVICSA-----IISGMCKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 518 ~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-p--~~~~~~~-----l~~~~~~~g~~~~A~~~~~~m~~ 581 (632)
. ..++ ++..-.-.|+..+..+.........-+ + ....|.. +.+.+...|+.++|.....+...
T Consensus 532 ~l~~~~L~-lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLN-LMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 2 2223 222222357777655554443321111 1 3445533 33446678999999888877653
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.37 E-value=34 Score=36.65 Aligned_cols=102 Identities=15% Similarity=0.094 Sum_probs=66.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCc---CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhc
Q 006744 210 IRVLAAERNLDACLRVWEEMKKDLVEA---DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286 (632)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 286 (632)
|+-+.+.+.+++|+++-+..... .+ -.......|..+...|++++|-...-.|... +..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 44567888899999887765433 33 3456777888888899999999888888765 555666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006744 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320 (632)
Q Consensus 287 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 320 (632)
++......+ +.......+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 655433322 2222222455677777777766
No 309
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.86 E-value=29 Score=35.19 Aligned_cols=166 Identities=13% Similarity=-0.014 Sum_probs=119.8
Q ss_pred CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006744 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419 (632)
Q Consensus 340 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 419 (632)
..|.....+++..+...-.+.-++.+..+|...|- +...+..++.+|... .-+.-..+|+++.+.+..++..-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 34666777888888888888888889899988764 456667777888777 667788899999888887777777777
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCc--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHH
Q 006744 420 GALLEIGEVKKALYLFGKMRGLNLEV--N---SLSFSIAIQCHVESGDILEACECHNKIIEM-SQVPSVAAYNCLTKGLC 493 (632)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~m~~~~~~p--~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~ 493 (632)
..|-+ ++.+.+...|......-++- + ...|..+... -..+.+....+..++... |...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 77776 88888888888887653321 1 1133333321 145677777777777653 44444566667778888
Q ss_pred hcCCHHHHHHHHHHHhhc
Q 006744 494 KIGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 494 ~~g~~~~A~~~~~~~~~~ 511 (632)
...++++|++++..+++.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 899999999999988764
No 310
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.52 E-value=5.4 Score=37.31 Aligned_cols=104 Identities=11% Similarity=0.121 Sum_probs=68.6
Q ss_pred CCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccH
Q 006744 197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL---VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273 (632)
Q Consensus 197 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 273 (632)
.|....+.+...++..-....+++.+...+-+++..- ..++. +-.+.++.|.+ =+.++++.++..=++.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 3444455555556655556677778877777776531 11221 22233444443 3556888888888888888888
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDS 302 (632)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (632)
.+++.+|+.+.+.++..+|..+.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888888888887777654
No 311
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.14 E-value=4.5 Score=38.24 Aligned_cols=90 Identities=12% Similarity=-0.014 Sum_probs=51.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006744 490 KGLCKIGEIDAAMMLVRDCLGNVASGP-TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT 568 (632)
Q Consensus 490 ~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 568 (632)
+-|.++|.+++|+..|...+.. .| +.++|..-..+|.+.+.+..|..=.+.++..+ ..-...|..-+.+-...|+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 3466777777777777765533 34 55666666777777777776666665555442 1112234444444444566
Q ss_pred HHHHHHHHHHHHHCC
Q 006744 569 LEEARKVFTNLRERK 583 (632)
Q Consensus 569 ~~~A~~~~~~m~~~~ 583 (632)
..+|.+-++..++..
T Consensus 181 ~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 181 NMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHhHHHHHhhC
Confidence 666666666655543
No 312
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.08 E-value=6.7 Score=29.77 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=25.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006744 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233 (632)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 233 (632)
.+|+|++|..+.+.+ +.||...|-+|-. .+.|.-+++..-+..|...|
T Consensus 51 NrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 51 NRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred ccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344555555444444 3466666665543 35555555555565666555
No 313
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.64 E-value=37 Score=34.02 Aligned_cols=122 Identities=8% Similarity=-0.026 Sum_probs=63.9
Q ss_pred HhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHH
Q 006744 354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALY 433 (632)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 433 (632)
...|+.-.|-+-+........ -++.............|+++.+...+....+.-.....+...++....+.|++++|..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~-~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQ-QDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCC-CCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 345665555444443333221 1333344444445666777777766665544322344556666666677777777777
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006744 434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477 (632)
Q Consensus 434 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 477 (632)
+-..|....++- ..........-...|-++++...|+++...+
T Consensus 379 ~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 379 TAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 766666554432 2222222223334556666666666665543
No 314
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.69 E-value=64 Score=35.83 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC---CcCHHhHHHHHHHHHhcCCh--hHHHHHHHHHHHcCCcccHHhHH---
Q 006744 206 YTAMIRVLAAERNLDACLRVWEEMKKDLV---EADVMAYVTLIMGLCKGGRV--VRGHELFREMKENGILIDRAIYG--- 277 (632)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~--- 277 (632)
|..|+..|...|+.++|+++|.+..+..- .--...+--++.-+.+.+.- +-.++.-+...+....-...++.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 78888889999999999999988876320 00011222244444444333 33444333333322111111111
Q ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006744 278 ---------VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320 (632)
Q Consensus 278 ---------~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 320 (632)
..+-.|.+....+-+..+++.+....-..+....+.++..|+.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1122344555566666666666655444455556666665553
No 315
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.64 E-value=27 Score=31.49 Aligned_cols=58 Identities=16% Similarity=0.266 Sum_probs=33.8
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHH-HHH--hcCCHHHHHHHHHHHHHCCCCC
Q 006744 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSA---IIS-GMC--KHGTLEEARKVFTNLRERKLLT 586 (632)
Q Consensus 529 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~---l~~-~~~--~~g~~~~A~~~~~~m~~~~~~~ 586 (632)
...+++.+|+++|++.....+..+.--|.. ++. ++| -.++.-.+...+++-++..+.-
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 455788888888888776644333333321 111 222 2356666777777777776543
No 316
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=85.50 E-value=32 Score=32.23 Aligned_cols=27 Identities=19% Similarity=0.006 Sum_probs=20.7
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006744 480 PSVAAYNCLTKGLCKIGEIDAAMMLVR 506 (632)
Q Consensus 480 p~~~~~~~li~~~~~~g~~~~A~~~~~ 506 (632)
-++.....+...|.+.|++.+|...|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 467788889999999999999988773
No 317
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.46 E-value=2.5 Score=24.60 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 555 ICSAIISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
+|..+..+|...|++++|...|++.++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4555555566666666666666655544
No 318
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.30 E-value=40 Score=33.20 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP---NEVICSAIISGMCKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 581 (632)
..+|..++..+.+.|.++.|...+.++...+... ++.+...-+..+...|+.++|...++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566667777777777777777766543111 233444455666677777777777777766
No 319
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.10 E-value=61 Score=35.08 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006744 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN 542 (632)
Q Consensus 463 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 542 (632)
..++...++...... .+......-+..-...++++.+...+..|-......+.-.-| +.+++...|+.++|..+|+
T Consensus 295 ~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW--~aRa~~~~g~~~~A~~~~~ 370 (644)
T PRK11619 295 TDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYW--QADLLLEQGRKAEAEEILR 370 (644)
T ss_pred CHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHH--HHHHHHHcCCHHHHHHHHH
Confidence 344444444433221 133333333444446666666666666654332211111112 4555555666666666666
Q ss_pred HHH
Q 006744 543 EMT 545 (632)
Q Consensus 543 ~m~ 545 (632)
.+.
T Consensus 371 ~~a 373 (644)
T PRK11619 371 QLM 373 (644)
T ss_pred HHh
Confidence 653
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.07 E-value=21 Score=29.69 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHHHhCCCC-cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006744 181 QGRIAEMLEILEKMRRNLCK-PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233 (632)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 233 (632)
.++.+++..+++.|.-..+. +...++-. ..+...|++++|+++|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence 34555555555555543211 11222222 33567777778887777777653
No 321
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.03 E-value=68 Score=35.60 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=18.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006744 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQ 336 (632)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (632)
-|..|+..|...|+.++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 466677777777777777777776654
No 322
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.95 E-value=2.7 Score=24.35 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 555 ICSAIISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
.|..+..++...|++++|++.|++..+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666665543
No 323
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.87 E-value=34 Score=32.06 Aligned_cols=140 Identities=17% Similarity=0.290 Sum_probs=93.2
Q ss_pred cCChhHHHHHHHHHHH-cCCcccHHhHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHccCCHHH
Q 006744 251 GGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVG-EG-KVGKACDLLKDLVDS-GYRADLGIYNSIIGGLCRVKQFDK 326 (632)
Q Consensus 251 ~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~ 326 (632)
+..+.+|+++|+...- ..+.-|..+...|++.... .+ ....-.++.+-+... |-.++..+...+|..++..+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3445667777763221 2344577777777766665 22 233333444444432 345677777888899999999999
Q ss_pred HHHHHHHHHhC-CCCCCHhcHHHHHHHHHhcCChhHHHHHHHH-----HHHCCCCccccHHHHHHHHhhh
Q 006744 327 AYKLFEVTVQD-DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ-----MEKLKFSVAADLEKFFEFLVGK 390 (632)
Q Consensus 327 A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~ 390 (632)
-.++++..... +..-|..-|..+|+.....|+..-...+.++ +.+.++..+..+...+-..+.+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 99998877655 5566788899999999999998877777764 3556677777777766665544
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.13 E-value=23 Score=29.44 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=31.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744 458 VESGDILEACECHNKIIEMSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 458 ~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 511 (632)
...++.+++..++..|.-.... +...++... .+...|++++|+++|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 3467777777777777654321 223333333 355777888888888776544
No 325
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.04 E-value=22 Score=35.64 Aligned_cols=107 Identities=15% Similarity=0.034 Sum_probs=64.8
Q ss_pred HHcCCHHHHHHHHHHHH---HCCCCCC-----HHhHHHHHHHHHhcCCHHHHHHHHHHHhhc------CCCC--------
Q 006744 458 VESGDILEACECHNKII---EMSQVPS-----VAAYNCLTKGLCKIGEIDAAMMLVRDCLGN------VASG-------- 515 (632)
Q Consensus 458 ~~~g~~~~a~~~~~~~~---~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~-------- 515 (632)
.-.|++.+|.+++...- +.|...+ ...||.|...+.+.|.+..+..+|.+.+++ .+..
T Consensus 251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls 330 (696)
T KOG2471|consen 251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS 330 (696)
T ss_pred HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence 34566666666654321 1121111 222355555556667777777777666531 1111
Q ss_pred ---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006744 516 ---PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566 (632)
Q Consensus 516 ---p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 566 (632)
.-..+|| ....|...|+.-.|.+.|.+.... +.-++..|-.|..+|...
T Consensus 331 ~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 331 QNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred cccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 1234455 455677889999999999988876 677889999999988743
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.95 E-value=3 Score=25.59 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 554 VICSAIISGMCKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 581 (632)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888877754
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.90 E-value=2.7 Score=25.83 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=18.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 483 AAYNCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 483 ~~~~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
.+++.|...|...|++++|..++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456677777777777777777777654
No 328
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.68 E-value=73 Score=34.89 Aligned_cols=222 Identities=15% Similarity=0.079 Sum_probs=114.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcccc----H----HHHHHHHhhhcccHHHHHHHHHHHHhCCCC-----ChhHHHHHHH
Q 006744 354 AEMGRMDNFFKLLAQMEKLKFSVAAD----L----EKFFEFLVGKEERIMMALDVFEELKGKGYS-----SVPIYNILMG 420 (632)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~~~----~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~li~ 420 (632)
....++++|..++.++...-..++.. . ...-.......|+.+.|+++.+...+.-+. ....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34567888888887775543322111 1 111122234568888888888776554322 4566778888
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCcCHHHHH---HHH--HHHHHcCCHH--HHHHHHHHHHHC-----CC-CCCHHhHHH
Q 006744 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFS---IAI--QCHVESGDIL--EACECHNKIIEM-----SQ-VPSVAAYNC 487 (632)
Q Consensus 421 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~---~ll--~~~~~~g~~~--~a~~~~~~~~~~-----~~-~p~~~~~~~ 487 (632)
+..-.|++++|..+..+..+..-.-+...|. .+. ..+...|... +....|...... .. .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999998887766542222333222 222 2345566322 222333332221 00 122334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh---hcCCCCChHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHHHHH
Q 006744 488 LTKGLCKIGEIDAAMMLVRDCL---GNVASGPTEFKYA--LTILHVCRSGEAEKIIEVLNEMTQEGCP----PNEVICSA 558 (632)
Q Consensus 488 li~~~~~~g~~~~A~~~~~~~~---~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~~~~~ 558 (632)
+..++.+ ++.+..-...-. ......|-...+. .|+......|+.++|...++++...... ++...-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555544 333322222111 1111112222222 4666677889999999888887765322 23222223
Q ss_pred HHHH--HHhcCCHHHHHHHHHH
Q 006744 559 IISG--MCKHGTLEEARKVFTN 578 (632)
Q Consensus 559 l~~~--~~~~g~~~~A~~~~~~ 578 (632)
.+.. ....|+.+.|.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 3332 2356787777766555
No 329
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.65 E-value=31 Score=30.48 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHccCCHHHH
Q 006744 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS---GYRADLGIYNSIIGGLCRVKQFDKA 327 (632)
Q Consensus 255 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A 327 (632)
+.|++.|-.+...+..-++.....|...|. ..+.+++..++....+. +-.+|...+.+|++.|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444433333333333333333 33444444444444332 1133444555555555555555544
No 330
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.42 E-value=42 Score=31.91 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=26.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 250 (632)
....|..++.+|+...-.++|+..+++-.+.| ..+...|.-=++.+++
T Consensus 298 ~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G-~i~l~~yLr~VR~lsR 345 (365)
T KOG2391|consen 298 TAPLYKQILECYALDLAIEDAIYSLGKSLRDG-VIDLDQYLRHVRLLSR 345 (365)
T ss_pred cchHHHHHHHhhhhhhHHHHHHHHHHHHHhcC-eeeHHHHHHHHHHHHH
Confidence 33445666666666666666666666666665 2344444444444443
No 331
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.33 E-value=2.7 Score=26.57 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=22.3
Q ss_pred HHHHHHhCCChhHHhHHHHHHHhcCCH
Q 006744 158 LAYCLSRNNLFRAADQVPELMDSQGRI 184 (632)
Q Consensus 158 li~~~~~~~~~~~a~~l~~~~~~~g~~ 184 (632)
|..+|...|+.+.|+++++++...|+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~~ 31 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGDE 31 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCH
Confidence 678888899999999888888877764
No 332
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.28 E-value=18 Score=27.56 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=29.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 527 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
.+...|++++|..+.+.+ ..||...|..|. -.+.|.-+.+..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 344566666666665554 356666665553 335666666666666665555
No 333
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.66 E-value=3.6 Score=23.88 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 484 AYNCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 484 ~~~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
+|..+..+|...|++++|+..|++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 34445555555555555555555544
No 334
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.61 E-value=0.57 Score=39.25 Aligned_cols=83 Identities=11% Similarity=0.055 Sum_probs=51.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 006744 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323 (632)
Q Consensus 244 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 323 (632)
++..+.+.+..+....+++.+...+..-+....+.++..|++.+..++..++++.. +..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45566666777777777777776665556777777778887777767776666511 11222345566666666
Q ss_pred HHHHHHHHHH
Q 006744 324 FDKAYKLFEV 333 (632)
Q Consensus 324 ~~~A~~~~~~ 333 (632)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 335
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.49 E-value=23 Score=36.57 Aligned_cols=99 Identities=19% Similarity=0.122 Sum_probs=66.9
Q ss_pred hhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 006744 389 GKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468 (632)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 468 (632)
.+.|+++.|.++..+.. +..-|..|..+..+.|++..|.+.|..... |..|+-.+...|+.+....
T Consensus 648 l~lgrl~iA~~la~e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN-----SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhcCcHHHHHHHHHhhc-----chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 45677777777665442 344588888888888888888888776654 4456666777777776666
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006744 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507 (632)
Q Consensus 469 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 507 (632)
+-....+.|. .|....+|...|+++++.+++.+
T Consensus 714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 6666665553 23344456677888888877755
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.38 E-value=12 Score=33.29 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=55.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 006744 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE--GCPPNEVICSAIIS 561 (632)
Q Consensus 484 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~ 561 (632)
|.+..++.+.+.+.+.+|+...++-++..+...+ +-..++..+|-.|++++|..-++-.-+. ...+-..+|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~--~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAG--GRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCcccc--chhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4456677888899999999998887665433333 3344889999999999998877766554 23445667777776
Q ss_pred H
Q 006744 562 G 562 (632)
Q Consensus 562 ~ 562 (632)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 337
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.29 E-value=14 Score=34.25 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=51.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHh----
Q 006744 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE---- 424 (632)
Q Consensus 350 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~---- 424 (632)
|.+++..++|.++....-+.-+.--+..+.+....|..|.|.+....+.++-......... +..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4556666666665555444433333344556666666677777777777666665543322 44447776666654
Q ss_pred -cCChhhHHHHH
Q 006744 425 -IGEVKKALYLF 435 (632)
Q Consensus 425 -~g~~~~A~~~~ 435 (632)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 68888888776
No 338
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.95 E-value=80 Score=34.07 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=18.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh
Q 006744 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG 285 (632)
Q Consensus 244 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 285 (632)
+|--|.|.|++++|.++..+..+. .......|...+..|..
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHh
Confidence 444555555555555555333222 22233344444455444
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.75 E-value=14 Score=32.48 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=43.9
Q ss_pred hhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHhHHHHHHHHHhcCCHHHHH
Q 006744 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM---SQVPSVAAYNCLTKGLCKIGEIDAAM 502 (632)
Q Consensus 429 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~ 502 (632)
+.|...|-++...+.- +....-..+..|-...+.+++..++....+. +-.+|+..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5566666666666533 3333333333444466677777777666643 22466777777777777777777664
No 340
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=81.33 E-value=51 Score=31.40 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCCCChHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhCCCCCC----HHH
Q 006744 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGN---VASGPTEFKYALTIL-HVCRSGEAEKIIEVLNEMTQEGCPPN----EVI 555 (632)
Q Consensus 484 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~ 555 (632)
.+-.....||+.|+-+.|.+.+.+..+. .+.+-|++.+.+-+. .|....-+.+-++..+.+.+.|..-+ ..+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 3444556677777777777666655432 233445444432211 12222223344444444555553222 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744 556 CSAIISGMCKHGTLEEARKVFTNLR 580 (632)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~m~ 580 (632)
|..+ -|....++.+|-.+|-+..
T Consensus 186 Y~Gl--y~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGL--YCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHH--HHHHHHhHHHHHHHHHHHc
Confidence 3332 1234456666666665443
No 341
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=81.07 E-value=36 Score=29.57 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC--------------CCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006744 452 IAIQCHVESGDILEACECHNKIIEMSQ--------------VPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507 (632)
Q Consensus 452 ~ll~~~~~~g~~~~a~~~~~~~~~~~~--------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 507 (632)
+++-.|.+..++.++.++++.|.+..+ .+--...|.....|.+.|.+|.|+.++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 445556667777777777777765322 23344567777778888888888888764
No 342
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.02 E-value=23 Score=27.19 Aligned_cols=46 Identities=4% Similarity=-0.047 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266 (632)
Q Consensus 221 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 266 (632)
+..+-++.+-...+.|+.....+.+++|.+.+++..|.++|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555666666666666666666666666666666554
No 343
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.90 E-value=10 Score=28.60 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHH
Q 006744 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370 (632)
Q Consensus 323 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 370 (632)
+.-++.+-++.+...++.|+.....+.+++|.+.+++..|.++++-+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445666667777777777777777777777777777777777777655
No 344
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.72 E-value=12 Score=28.25 Aligned_cols=45 Identities=4% Similarity=-0.055 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 006744 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265 (632)
Q Consensus 221 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 265 (632)
++.+-++.+....+.|+.....+.+++|-+.+++..|.++|+-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444455555555555555555555554443
No 345
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=79.96 E-value=62 Score=31.53 Aligned_cols=119 Identities=8% Similarity=0.024 Sum_probs=64.7
Q ss_pred hhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh---cCCHHHHHHHH
Q 006744 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK---IGEIDAAMMLV 505 (632)
Q Consensus 429 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~ 505 (632)
+.-+.++++..+.+ +-+......++..+.+..+.++..+.|+.+.... .-+...|...++.... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44556677766653 3445556666777777777777777777777653 2246666666655443 22455666666
Q ss_pred HHHhhcCCCC---------C----hHHHHHH---HHHHHHHcCCHHHHHHHHHHHHhCCC
Q 006744 506 RDCLGNVASG---------P----TEFKYAL---TILHVCRSGEAEKIIEVLNEMTQEGC 549 (632)
Q Consensus 506 ~~~~~~~~~~---------p----~~~~~~~---l~~~~~~~g~~~~a~~~~~~m~~~g~ 549 (632)
.+++...... + +...... +...+...|-.+.|+.+++.+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 5554321100 0 1111111 12222355777777777777776653
No 346
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.90 E-value=5.8 Score=22.85 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 485 YNCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 485 ~~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
+..+...+...|++++|++.|++.+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444444555555555444443
No 347
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.89 E-value=14 Score=32.78 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC--CcccHHhHHHHHHH
Q 006744 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG--ILIDRAIYGVLIEG 282 (632)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~ 282 (632)
.+..++.+.+.+.+.+|+.+.++-.+.. +-|...-..+++.+|-.|++++|..-++-.-+.. ..+-..+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566777777777777777666553 3355566667777777788877777666554432 22334566666654
No 348
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.11 E-value=6.2 Score=22.81 Aligned_cols=29 Identities=21% Similarity=0.056 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 554 VICSAIISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
.+|..+...|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35667777888888888888888877654
No 349
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.69 E-value=7.8 Score=28.00 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=7.5
Q ss_pred cCCHHHHHHHHHHHhhc
Q 006744 495 IGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 495 ~g~~~~A~~~~~~~~~~ 511 (632)
..+.++|+..|+.+++.
T Consensus 19 ~~~~~~Al~~W~~aL~k 35 (80)
T PF10579_consen 19 QNETQQALQKWRKALEK 35 (80)
T ss_pred cchHHHHHHHHHHHHhh
Confidence 33444444444444433
No 350
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.57 E-value=55 Score=30.17 Aligned_cols=184 Identities=10% Similarity=0.006 Sum_probs=97.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCcCHH---hHHHHHHHHHhcCChhHHHHHHHHHHHc---CC--cccHHhHHHHHHHHHhc
Q 006744 215 AERNLDACLRVWEEMKKDLVEADVM---AYVTLIMGLCKGGRVVRGHELFREMKEN---GI--LIDRAIYGVLIEGLVGE 286 (632)
Q Consensus 215 ~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~--~p~~~~~~~li~~~~~~ 286 (632)
+..+.++|+.-|++..+..-+...+ +...+|....+.|++++..+.+.+|... .+ .-+....|.+++.-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3446677777777766542222222 3344567777777777777777666431 00 11334556666655555
Q ss_pred CCHHHHHHHHHHHHHC-CCCCCHh----hHHHHHHHHHccCCHHHHHHHHHHHHhCCC----CCC-------HhcHHHHH
Q 006744 287 GKVGKACDLLKDLVDS-GYRADLG----IYNSIIGGLCRVKQFDKAYKLFEVTVQDDL----APD-------FSTVNPLL 350 (632)
Q Consensus 287 g~~~~a~~~~~~m~~~-g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~-------~~~~~~ll 350 (632)
.+.+-..++|+.-.+. .-.-+.. |-+.|...|...+++.+..++++++.+.-- .-| ...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 5555544444433221 0000111 224566777777788777777777654211 111 23466666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHH-----hhhcccHHHHH
Q 006744 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL-----VGKEERIMMAL 398 (632)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~ 398 (632)
..|....+-.+...++++...............++.- ..+.|++++|-
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 7777777777777777766544332222333333333 34567777665
No 351
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.20 E-value=77 Score=32.19 Aligned_cols=11 Identities=27% Similarity=0.395 Sum_probs=5.3
Q ss_pred hHHHHHHHHhh
Q 006744 592 VYDEILIEHMK 602 (632)
Q Consensus 592 ~~~~l~~~~~~ 602 (632)
.|+.++...+.
T Consensus 350 iY~~~i~~~i~ 360 (413)
T PHA02875 350 FYKYLLKEAAD 360 (413)
T ss_pred hHHHHHHHHHH
Confidence 35555554444
No 352
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.16 E-value=83 Score=31.96 Aligned_cols=76 Identities=16% Similarity=0.056 Sum_probs=38.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcCHHh--HHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHH--hHHHHHHHHHhcCC
Q 006744 213 LAAERNLDACLRVWEEMKKDLVEADVMA--YVTLIMGLCKGGRVVRGHELFREMKENGILIDRA--IYGVLIEGLVGEGK 288 (632)
Q Consensus 213 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~ 288 (632)
.++.|+.+-+. .+.+.|..++... ..+.+...+..|+.+ +.+.+.+.|..++.. ...+.+...+..|+
T Consensus 9 A~~~g~~~iv~----~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIAR----RLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 44566654443 3444565555432 233445555666654 344445566554432 11234455556677
Q ss_pred HHHHHHHH
Q 006744 289 VGKACDLL 296 (632)
Q Consensus 289 ~~~a~~~~ 296 (632)
.+.+..++
T Consensus 81 ~~~v~~Ll 88 (413)
T PHA02875 81 VKAVEELL 88 (413)
T ss_pred HHHHHHHH
Confidence 66554444
No 353
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.08 E-value=29 Score=26.66 Aligned_cols=51 Identities=10% Similarity=0.150 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 006744 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG 515 (632)
Q Consensus 465 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 515 (632)
+..+-++.+......|++.+..+.+++|-+.+++.-|+++|+.+....+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~ 78 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK 78 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh
Confidence 344445555555566666666666666666666666666666665554433
No 354
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.00 E-value=6.3 Score=22.78 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006744 484 AYNCLTKGLCKIGEIDAAMMLVRDCLG 510 (632)
Q Consensus 484 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 510 (632)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666543
No 355
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.57 E-value=40 Score=28.03 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCcCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCcccHHhHHH
Q 006744 205 AYTAMIRVLAAERNLDACLRVWEEMKKDL-----VEADVMAYVTLIMGLCKGGR-VVRGHELFREMKENGILIDRAIYGV 278 (632)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ 278 (632)
..|.++.-....+++...+.+++.+.... -..+...|++++.+...... ---+..+|..|++.+...+..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 35677777777777777777777663321 02345567777777765554 4456677777777777777777777
Q ss_pred HHHHHHhc
Q 006744 279 LIEGLVGE 286 (632)
Q Consensus 279 li~~~~~~ 286 (632)
+|.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77776554
No 356
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.31 E-value=4.9 Score=25.40 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 558 AIISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
.|..+|...|+.+.|++++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46678888888888888888887654
No 357
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=77.10 E-value=1.3e+02 Score=33.48 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=17.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHH
Q 006744 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520 (632)
Q Consensus 482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 520 (632)
..++..-...+...|++..|.+++.+++++.+..++...
T Consensus 1231 sK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~ 1269 (1304)
T KOG1114|consen 1231 SKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDV 1269 (1304)
T ss_pred chheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence 333333333344445555555555554444333333333
No 358
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=76.00 E-value=23 Score=27.78 Aligned_cols=26 Identities=8% Similarity=0.276 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 006744 206 YTAMIRVLAAERNLDACLRVWEEMKK 231 (632)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~ 231 (632)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77788888888888888888887766
No 359
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=75.85 E-value=70 Score=29.92 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=64.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCChHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---
Q 006744 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV---ASGPTEFKYA-LTILHVCRSGEAEKIIEVLNEMTQEGCPPNE--- 553 (632)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~--- 553 (632)
-...+..+.+.|++.++.+.+.+...+.++.. +.+.|+...- .|...|....-+++-++..+.|.++|..-+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 35566777888888888888888777765431 3333432221 1222233333456777777778887743222
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhh
Q 006744 554 -VICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK 602 (632)
Q Consensus 554 -~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~ 602 (632)
.+|..+ -+....++.+|-.++-+.... ......+.|........-
T Consensus 194 yK~Y~Gi--~~m~~RnFkeAa~Ll~d~l~t--F~S~El~sY~~~vrYa~~ 239 (412)
T COG5187 194 YKVYKGI--FKMMRRNFKEAAILLSDILPT--FESSELISYSRAVRYAIF 239 (412)
T ss_pred HHHHHHH--HHHHHHhhHHHHHHHHHHhcc--ccccccccHHHHHHHHHH
Confidence 233222 123445677777776655433 223355566665554443
No 360
>PRK09687 putative lyase; Provisional
Probab=75.61 E-value=75 Score=30.18 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=15.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006744 524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563 (632)
Q Consensus 524 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 563 (632)
.+.++...|+. +|+..+..+.+. .+|..+-...+.+|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 34444444443 345555554443 23444444444433
No 361
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.30 E-value=20 Score=34.10 Aligned_cols=87 Identities=14% Similarity=0.014 Sum_probs=45.7
Q ss_pred hhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 006744 388 VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467 (632)
Q Consensus 388 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 467 (632)
|.+.|.+++|+..|.......+.+.+.+..-..+|.+...+..|..=.......+ ..-...|+.-..+-...|...+|.
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5566666666666666666555566666666666776666665554444443321 111122333333333345555555
Q ss_pred HHHHHHHH
Q 006744 468 ECHNKIIE 475 (632)
Q Consensus 468 ~~~~~~~~ 475 (632)
+-++..++
T Consensus 186 kD~E~vL~ 193 (536)
T KOG4648|consen 186 KDCETVLA 193 (536)
T ss_pred HhHHHHHh
Confidence 55555544
No 362
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=74.82 E-value=89 Score=30.68 Aligned_cols=67 Identities=12% Similarity=-0.068 Sum_probs=37.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC-CCC-----HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHH
Q 006744 456 CHVESGDILEACECHNKIIEMSQ-VPS-----VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA 522 (632)
Q Consensus 456 ~~~~~g~~~~a~~~~~~~~~~~~-~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 522 (632)
.|...+|+-.|.-+-+++...-+ .|+ ..-|+.++....+.+.+=.+-+.|+.+.......-|..-|.
T Consensus 180 KOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~ 252 (439)
T KOG1498|consen 180 LCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWI 252 (439)
T ss_pred HHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhh
Confidence 45556666666666555544322 233 23466667666677777777777776665544444444343
No 363
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.57 E-value=35 Score=30.00 Aligned_cols=88 Identities=16% Similarity=0.116 Sum_probs=42.4
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 006744 422 LLEIGEVKKALYLFGKMRGLNLEVN-----SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496 (632)
Q Consensus 422 ~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 496 (632)
+.+.|++++|..-|.+.+..- ++. .+.|..-..++.+.+.++.|..-..+.++.+.. .......-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 344555555555555555431 111 122333334555556666666555555554321 1112222234555666
Q ss_pred CHHHHHHHHHHHhhc
Q 006744 497 EIDAAMMLVRDCLGN 511 (632)
Q Consensus 497 ~~~~A~~~~~~~~~~ 511 (632)
.+++|+.-|+++++.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666666666666543
No 364
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.09 E-value=78 Score=29.64 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=61.2
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHHHhh----CCCCcCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCH---
Q 006744 411 SVPIYNILMGALLEIGEVKKALYLFGKMRG----LNLEVNSLSFSIAI-QCHVESGDILEACECHNKIIEMSQVPSV--- 482 (632)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~t~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~p~~--- 482 (632)
...+|..+...|++.++.+.+.+...+..+ .|.+.|.....+-+ -.|....-+++-++..+.|++.|...+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 456788888889998888888877665543 35555544322222 2344444567777888888888766542
Q ss_pred -HhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744 483 -AAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 483 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 511 (632)
.+|..+.. ....++.+|-.++-+.+..
T Consensus 194 yK~Y~Gi~~--m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 194 YKVYKGIFK--MMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHHH--HHHHhhHHHHHHHHHHhcc
Confidence 23333322 2345678888888777654
No 365
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.08 E-value=6.4 Score=22.45 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=13.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 558 AIISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
.+..++.+.|++++|.++|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444555556666666666555544
No 366
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=74.00 E-value=1e+02 Score=30.90 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 521 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 585 (632)
...|+.-|...|+..+|...++++-.- +-.....+.+++.+.-+.|+-..-+.+++..-+.|+.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI 575 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI 575 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce
Confidence 445788888999999999988876432 2234667888888888889888777888777766653
No 367
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.38 E-value=45 Score=31.03 Aligned_cols=87 Identities=16% Similarity=0.155 Sum_probs=56.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhC--CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH-
Q 006744 417 ILMGALLEIGEVKKALYLFGKMRGL--NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC- 493 (632)
Q Consensus 417 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~- 493 (632)
.=|++++..|++.+++...-+--+. .++|...-.. |-.|.+.+....+.++-..-....-.-+..-|..+++.|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3478888889988887655444332 2444443333 3347788888888887777766433333444777666655
Q ss_pred ----hcCCHHHHHHHH
Q 006744 494 ----KIGEIDAAMMLV 505 (632)
Q Consensus 494 ----~~g~~~~A~~~~ 505 (632)
-.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 468899998877
No 368
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.20 E-value=5.8 Score=21.53 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 006744 557 SAIISGMCKHGTLEEARKVFT 577 (632)
Q Consensus 557 ~~l~~~~~~~g~~~~A~~~~~ 577 (632)
..+..++...|+.++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555666666666665553
No 369
>PRK09687 putative lyase; Provisional
Probab=71.97 E-value=92 Score=29.58 Aligned_cols=146 Identities=10% Similarity=-0.033 Sum_probs=63.3
Q ss_pred cCHHhHHHHHHHHHhcCCh----hHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCCh-----hHHHHHHHHHHHcCCcc
Q 006744 201 PDVFAYTAMIRVLAAERNL----DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV-----VRGHELFREMKENGILI 271 (632)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-----~~a~~~~~~m~~~~~~p 271 (632)
+|...-...+.++.+.|+. .++..++..+... .++...-...+.++...+.- ..+.+.+..... .+
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~ 140 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DK 140 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CC
Confidence 3444444555555555542 3455556555322 34444444445554443321 122222222222 22
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHhcHHHHH
Q 006744 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK-QFDKAYKLFEVTVQDDLAPDFSTVNPLL 350 (632)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll 350 (632)
+..+-...+.++++.|+ +++...+-.+.+. ++..+-..-+.++.+.+ +...+...+..+.. .++...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44455555556655555 3344444444432 23333344444444432 12344444444442 12333344444
Q ss_pred HHHHhcCC
Q 006744 351 VCCAEMGR 358 (632)
Q Consensus 351 ~~~~~~~~ 358 (632)
.++.+.++
T Consensus 214 ~aLg~~~~ 221 (280)
T PRK09687 214 IGLALRKD 221 (280)
T ss_pred HHHHccCC
Confidence 44444444
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.76 E-value=14 Score=26.78 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=31.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHH
Q 006744 459 ESGDILEACECHNKIIEMSQVPS--VAAYNCLTKGLCKIGEIDAAMMLV 505 (632)
Q Consensus 459 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 505 (632)
...+.++|+..|...++.-..+. -.++..|+.+|+..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777776543332 345667777888888887776654
No 371
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.59 E-value=7.2 Score=22.20 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=10.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh
Q 006744 489 TKGLCKIGEIDAAMMLVRDCLG 510 (632)
Q Consensus 489 i~~~~~~g~~~~A~~~~~~~~~ 510 (632)
..++.+.|++++|.+.|+++++
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3344444555555555555443
No 372
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=71.31 E-value=1.6e+02 Score=31.91 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=28.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhc
Q 006744 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG 251 (632)
Q Consensus 208 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 251 (632)
.+|-.|.|+|++++|.++.++.... .......+...+..|+..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4566678999999999888555433 244456667777777665
No 373
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.36 E-value=2.8e+02 Score=34.56 Aligned_cols=86 Identities=8% Similarity=-0.081 Sum_probs=51.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHH-HHHHHHhcCC
Q 006744 210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV-LIEGLVGEGK 288 (632)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~ 288 (632)
|-.....|++..|...|+.+.+.+ ++...+++.++......|.++...-..+-..... .+....+++ =+.+-.+.++
T Consensus 1456 il~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~q 1533 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQ 1533 (2382)
T ss_pred HHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcc
Confidence 334566788888888888888764 2336667777776666777776666555444331 222222322 2344466777
Q ss_pred HHHHHHHHH
Q 006744 289 VGKACDLLK 297 (632)
Q Consensus 289 ~~~a~~~~~ 297 (632)
++.......
T Consensus 1534 wD~~e~~l~ 1542 (2382)
T KOG0890|consen 1534 WDLLESYLS 1542 (2382)
T ss_pred hhhhhhhhh
Confidence 776666654
No 374
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=69.86 E-value=14 Score=39.02 Aligned_cols=11 Identities=18% Similarity=0.531 Sum_probs=4.8
Q ss_pred HHHHHHHCCCC
Q 006744 575 VFTNLRERKLL 585 (632)
Q Consensus 575 ~~~~m~~~~~~ 585 (632)
+..++.++++.
T Consensus 770 li~El~r~q~~ 780 (830)
T KOG1923|consen 770 LIRELKRRQIK 780 (830)
T ss_pred HHHHHHHhccc
Confidence 44444444443
No 375
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.60 E-value=99 Score=28.94 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHH----HhhCCCCcCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHC----CCCCCHHhHH
Q 006744 416 NILMGALLEIGEVKKALYLFGK----MRGLNLEVNSLSFSIAI-QCHVESGDILEACECHNKIIEM----SQVPSVAAYN 486 (632)
Q Consensus 416 ~~li~~~~~~g~~~~A~~~~~~----m~~~~~~p~~~t~~~ll-~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~ 486 (632)
.-++..+.+.|.+.+|+.+... +.+..-+++..+...+= .+|-...++.++..-+..+... -.+|-...--
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 4577888889999998876544 44444455554433322 2455555555554444433321 1122222222
Q ss_pred HHHHH--HHhcCCHHHHHHHHHHHhhcC
Q 006744 487 CLTKG--LCKIGEIDAAMMLVRDCLGNV 512 (632)
Q Consensus 487 ~li~~--~~~~g~~~~A~~~~~~~~~~~ 512 (632)
-|+.+ .|...++..|..+|-+..+..
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhcc
Confidence 23333 234456777777777766543
No 376
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=68.58 E-value=40 Score=29.15 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 006744 463 ILEACECHNKIIEMSQVPSVAAYNCLTKGL 492 (632)
Q Consensus 463 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 492 (632)
+++|.+.|++..+ .+|+..+|+.-+...
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 3444445555444 346666776666554
No 377
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=68.42 E-value=64 Score=30.94 Aligned_cols=52 Identities=25% Similarity=0.270 Sum_probs=24.4
Q ss_pred HHHcCCHHHHHHHHHHHHHC---CCCCCHHhH--HHHHHHHHhcCCHHHHHHHHHHH
Q 006744 457 HVESGDILEACECHNKIIEM---SQVPSVAAY--NCLTKGLCKIGEIDAAMMLVRDC 508 (632)
Q Consensus 457 ~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~ 508 (632)
..+.++.++|.++++++.+. --.|+...| ..+..++...|+..++.+++++.
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~ 141 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDL 141 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 33444566666666555542 112343333 22334444555555555555443
No 378
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=68.23 E-value=1.3e+02 Score=29.83 Aligned_cols=152 Identities=13% Similarity=0.053 Sum_probs=86.8
Q ss_pred ChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHH
Q 006744 167 LFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIM 246 (632)
Q Consensus 167 ~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 246 (632)
.++++.+.|......++.+....++.+- +-.+.++-.+-..+.+.|+.+.|.+++++..-.- ..++.....
T Consensus 9 ~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~-----PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~ 79 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSHDPNALINLLQKN-----PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFS 79 (360)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhh
Confidence 4555666666666666666555555332 2356677777788888888888888887765210 001111110
Q ss_pred HHH---hcCChhHHHHHHHHHHHcCCcccHHhHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-
Q 006744 247 GLC---KGGRVVRGHELFREMKENGILIDRAIYGVL---IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC- 319 (632)
Q Consensus 247 ~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~- 319 (632)
.+. ..|... ......-|...|.++ |..+.+.|.+..|.++.+-+....+.-|......+|+.|+
T Consensus 80 ~~~~~~~~g~~r---------L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~AL 150 (360)
T PF04910_consen 80 PFRSNLTSGNCR---------LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYAL 150 (360)
T ss_pred hhhcccccCccc---------cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHH
Confidence 000 001100 000011144444443 4567788889999998888888766555555556676664
Q ss_pred ccCCHHHHHHHHHHHHh
Q 006744 320 RVKQFDKAYKLFEVTVQ 336 (632)
Q Consensus 320 ~~g~~~~A~~~~~~m~~ 336 (632)
+.++++-.+++.+....
T Consensus 151 rs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 151 RSRQYQWLIDFSESPLA 167 (360)
T ss_pred hcCCHHHHHHHHHhHhh
Confidence 67778777777776544
No 379
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=67.66 E-value=1.2e+02 Score=29.21 Aligned_cols=86 Identities=16% Similarity=0.231 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCChHHHHHH--HHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHH-H
Q 006744 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVA--SGPTEFKYAL--TILHVCRSGEAEKIIEVLNEMTQ-----EGCPPNEV-I 555 (632)
Q Consensus 486 ~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~-~ 555 (632)
..++...-+.++.++|+++++++.+... ..|+.+.|-. ....+...||..++.+++.+..+ .|+++++. .
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 3344555667788999999988875432 2366666643 34445566888888888887776 57777555 3
Q ss_pred HHHHHHHHHh-cCCHHH
Q 006744 556 CSAIISGMCK-HGTLEE 571 (632)
Q Consensus 556 ~~~l~~~~~~-~g~~~~ 571 (632)
|..+..-|.+ .|++..
T Consensus 159 fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 5555555544 355543
No 380
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.59 E-value=87 Score=27.18 Aligned_cols=77 Identities=21% Similarity=0.110 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-----------ChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCC
Q 006744 394 IMMALDVFEELKGKGYSSVPIYNILMGALLEIG-----------EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462 (632)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 462 (632)
+++|+.-|++....++....++..+..+|...+ .+++|...|++... ..|+..+|+.-+...
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~----- 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA----- 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH-----
Confidence 445666666666666665666666666665543 24556666666665 579999999988775
Q ss_pred HHHHHHHHHHHHHCCC
Q 006744 463 ILEACECHNKIIEMSQ 478 (632)
Q Consensus 463 ~~~a~~~~~~~~~~~~ 478 (632)
++|-+++.++.+.+.
T Consensus 124 -~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 -AKAPELHMEIHKQGL 138 (186)
T ss_dssp -HTHHHHHHHHHHSSS
T ss_pred -HhhHHHHHHHHHHHh
Confidence 356777777777653
No 381
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=66.55 E-value=1.2e+02 Score=28.66 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580 (632)
Q Consensus 522 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 580 (632)
+.....|...|.+.+|.++.++..... +.+...|..|+..+...||--.|.+-++.+.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 345567778899999999999998875 7788889999999999999777777776663
No 382
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.19 E-value=1.6e+02 Score=30.04 Aligned_cols=105 Identities=15% Similarity=0.069 Sum_probs=63.9
Q ss_pred hhhcccHHHHHHHHHHHHhCCCC---------ChhHHHHHHHHHHhcCChhhHHHHHHHHhh-------CCCCcC-----
Q 006744 388 VGKEERIMMALDVFEELKGKGYS---------SVPIYNILMGALLEIGEVKKALYLFGKMRG-------LNLEVN----- 446 (632)
Q Consensus 388 ~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~p~----- 446 (632)
+.-.|++.+|.+++....-...+ .-..||.|...+.+.|.+.-+..+|....+ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 34557777777777654221111 122356776666677776666666655543 354443
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 006744 447 ------SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494 (632)
Q Consensus 447 ------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 494 (632)
..+||.=+ .|...|+.-.|.++|.+..+. +..++..|-.|..+|..
T Consensus 330 s~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 22344333 467888999999998888764 34677888888887763
No 383
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=66.04 E-value=24 Score=22.80 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=16.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHH
Q 006744 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI 210 (632)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 210 (632)
.+.++|-..++..++++|.+.|+.-+...|..++
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3334444445555555555555555544444443
No 384
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=65.41 E-value=33 Score=27.96 Aligned_cols=62 Identities=13% Similarity=0.152 Sum_probs=37.1
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744 524 TILHVCRSG---EAEKIIEVLNEMTQEGCPPN-EVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 524 l~~~~~~~g---~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 585 (632)
+.+++.++. +..+.+.++++..+...+.. ......|.-++.+.|++++++++.+.+.+....
T Consensus 38 lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 38 LAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 555665553 45566777777775322222 223334555677778888888888777777644
No 385
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=65.08 E-value=72 Score=27.70 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=15.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006744 559 IISGMCKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 559 l~~~~~~~g~~~~A~~~~~~m~~ 581 (632)
.+..|.+.|.+++|.+++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34466677777777777777665
No 386
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=64.07 E-value=1.4e+02 Score=28.61 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=8.8
Q ss_pred HcCCHHHHHHHHHHHHH
Q 006744 459 ESGDILEACECHNKIIE 475 (632)
Q Consensus 459 ~~g~~~~a~~~~~~~~~ 475 (632)
+.|+..+|.+.|+.+.+
T Consensus 287 klGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMK 303 (556)
T ss_pred HhhhHHHHHHHHHHHhh
Confidence 44555555555555444
No 387
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=63.60 E-value=2.1e+02 Score=30.59 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhCCChhHHhHHHHH
Q 006744 152 FASYNALAYCLSRNNLFRAADQVPEL 177 (632)
Q Consensus 152 ~~~~~~li~~~~~~~~~~~a~~l~~~ 177 (632)
..-|+ .+..+.-.|.++.|.+++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 44454 67777778889988888843
No 388
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=63.06 E-value=1.7e+02 Score=29.37 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 006744 522 ALTILHVCRSGEAEKIIEVLNEM 544 (632)
Q Consensus 522 ~~l~~~~~~~g~~~~a~~~~~~m 544 (632)
..+|+-|..+|+..+.++.++.+
T Consensus 349 ~~IIqEYFlsgDt~Evi~~L~DL 371 (645)
T KOG0403|consen 349 TPIIQEYFLSGDTPEVIRSLRDL 371 (645)
T ss_pred HHHHHHHHhcCChHHHHHHHHHc
Confidence 34677777778877777777644
No 389
>PRK13342 recombination factor protein RarA; Reviewed
Probab=62.58 E-value=1.8e+02 Score=29.52 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=29.0
Q ss_pred HHHHHHHHh---cCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC
Q 006744 416 NILMGALLE---IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461 (632)
Q Consensus 416 ~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 461 (632)
..++.++.+ .++.+.|+..+..|.+.|..|....-..++.++...|
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 334444443 4788888888888888887776555555554544443
No 390
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.80 E-value=2.9e+02 Score=31.29 Aligned_cols=50 Identities=10% Similarity=-0.001 Sum_probs=31.8
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHH
Q 006744 138 FFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLE 189 (632)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~ 189 (632)
+|..+ +..-+.|...-+-.=|..+.+.+++++|.++...|. .+++++...
T Consensus 984 L~~~L-~~~~LSp~~~~~L~~la~~i~~~~y~~a~~i~~~ia-tt~~~E~s~ 1033 (1049)
T KOG0307|consen 984 LFDKL-RDGTLSPPITDGLHQLAQSIKNRDYSEALQIHAQIA-TTEFDECSS 1033 (1049)
T ss_pred HHHHH-hcCCcChHHHHHHHHHHHHHhhccHHHHHHHHHHHh-hcchhhhhh
Confidence 44443 333466766666555666777788888888887777 555555443
No 391
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=60.63 E-value=26 Score=37.39 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=40.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHH
Q 006744 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283 (632)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 283 (632)
..|..-+..+..+++.. ....+.+..+-.-.+...-.-++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+..+
T Consensus 373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~ 448 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWF 448 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHH
Confidence 34555555555544333 44444444432223455556667777777777777777766654422 233466666677
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 006744 284 VGEGKVGKACDLLKDLVD 301 (632)
Q Consensus 284 ~~~g~~~~a~~~~~~m~~ 301 (632)
.+.|+.+.+..+-+.+.+
T Consensus 449 ~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp H-----------------
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 777777766666665554
No 392
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.48 E-value=81 Score=24.76 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 555 ICSAIISGMCKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 581 (632)
-|..|+..|...|..++|.+++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377888888888888888888888877
No 393
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.41 E-value=22 Score=31.53 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=42.7
Q ss_pred cCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHh
Q 006744 128 VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS 180 (632)
Q Consensus 128 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~ 180 (632)
...+.+......+|+.+-....|+...|..++.++...|+.++|.++.+++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34466666777788877777889999999999999999999998887766554
No 394
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.25 E-value=26 Score=24.16 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744 552 NEVICSAIISGMCKHGTLEEARKVFTNLR 580 (632)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 580 (632)
|..-.-.++.+|...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334455666666666666666666554
No 395
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=60.16 E-value=35 Score=22.00 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=12.7
Q ss_pred cCChhHHHHHHHHHHHcCCcccHHhHHHH
Q 006744 251 GGRVVRGHELFREMKENGILIDRAIYGVL 279 (632)
Q Consensus 251 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 279 (632)
.|-+.++..++++|.+.|+..+...|..+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 34444444444444444444444444333
No 396
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=60.09 E-value=1.7e+02 Score=28.35 Aligned_cols=81 Identities=14% Similarity=0.093 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHcCC----cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 006744 254 VVRGHELFREMKENGI----LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329 (632)
Q Consensus 254 ~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 329 (632)
..+|.+.|+.....+. ..+......++....+.|+.+.-..+++..... .+......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4556666666555311 234445555555556666655544444444432 244555566666666666666666
Q ss_pred HHHHHHhC
Q 006744 330 LFEVTVQD 337 (632)
Q Consensus 330 ~~~~m~~~ 337 (632)
+++.....
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 66666654
No 397
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=59.93 E-value=2.8e+02 Score=30.71 Aligned_cols=97 Identities=12% Similarity=-0.013 Sum_probs=49.2
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHH
Q 006744 134 LASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVL 213 (632)
Q Consensus 134 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 213 (632)
...+.+..+....|+..+......++.. ..|+...|+.+++.....+.-.--.+....|. |. .|...+..++..+
T Consensus 182 eIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~L--G~-~d~~~i~~ll~aL 256 (830)
T PRK07003 182 HIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGML--GA-LDQTYMVRLLDAL 256 (830)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHh--CC-CCHHHHHHHHHHH
Confidence 3344445544445555555444433332 24666666666655443221000111122222 22 3444455566644
Q ss_pred HhcCChhHHHHHHHHHHhCCCCc
Q 006744 214 AAERNLDACLRVWEEMKKDLVEA 236 (632)
Q Consensus 214 ~~~g~~~~A~~~~~~m~~~~~~p 236 (632)
..|+..+++.+++++...|+..
T Consensus 257 -~~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 257 -AAGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred -HcCCHHHHHHHHHHHHHhCCCH
Confidence 4488888888888888777544
No 398
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=59.89 E-value=1.2e+02 Score=27.54 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=37.8
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHhH--HHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP---SVAAY--NCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 443 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~--~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
+.++..-++.|+--|.-...+.+|.+.|.. +.|+.+ |..++ ..-|......|++++|++.....-
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 455566666666655555555555555543 234443 23232 234666778888888888777653
No 399
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=59.17 E-value=2.6e+02 Score=30.22 Aligned_cols=165 Identities=16% Similarity=0.119 Sum_probs=82.9
Q ss_pred HhHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCcCHH-----hHHHHHHHHHhcCChhHHHHHHHHHHHc----CCcccH
Q 006744 204 FAYTAMIRVLA-AERNLDACLRVWEEMKKDLVEADVM-----AYVTLIMGLCKGGRVVRGHELFREMKEN----GILIDR 273 (632)
Q Consensus 204 ~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~ 273 (632)
.++-.+...+. ...+++.|...+++.....-.++.. ....++..+.+.+... |...+++.++. +..+-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34445555555 5677788887777654332122211 2224455566555554 77777766542 112222
Q ss_pred HhHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHH--ccCCHHHHHHHHHHHHhCC---------
Q 006744 274 AIYGVL-IEGLVGEGKVGKACDLLKDLVDSG---YRADLGIYNSIIGGLC--RVKQFDKAYKLFEVTVQDD--------- 338 (632)
Q Consensus 274 ~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~--------- 338 (632)
..|..+ +..+...++...|.+.++.+...- ..+...++..++.+.. +.+..+++.+.++.+....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 333333 333333467777887777766532 2233444444444433 3444556666665553211
Q ss_pred CCCCHhcHHHHHHHHH--hcCChhHHHHHHHHH
Q 006744 339 LAPDFSTVNPLLVCCA--EMGRMDNFFKLLAQM 369 (632)
Q Consensus 339 ~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 369 (632)
..|...+|..+++.++ ..|+++.+.+.++++
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1234455666665444 455655555555444
No 400
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.16 E-value=49 Score=34.21 Aligned_cols=90 Identities=8% Similarity=-0.031 Sum_probs=60.8
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006744 494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR 573 (632)
Q Consensus 494 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 573 (632)
..|+...|.+.+..+....+..-++... .|.....+.|-...|-.++.+..... ...+-++..+.+++....+++.|+
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v-~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLV-NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHH-HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 4677788888777766543333333222 25556666677777778777776664 445567777888888888888888
Q ss_pred HHHHHHHHCCCC
Q 006744 574 KVFTNLRERKLL 585 (632)
Q Consensus 574 ~~~~~m~~~~~~ 585 (632)
+.|+...++...
T Consensus 697 ~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 697 EAFRQALKLTTK 708 (886)
T ss_pred HHHHHHHhcCCC
Confidence 888888877653
No 401
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.92 E-value=1e+02 Score=25.04 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006744 536 KIIEVLNEMTQEGCPP-NEVICSAIISGMCKHGTLEEARKVFTN 578 (632)
Q Consensus 536 ~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 578 (632)
.+.++|+.|..+|+-- -+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 8888999998887643 456788888888899999999999875
No 402
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=57.50 E-value=24 Score=19.00 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 555 ICSAIISGMCKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 581 (632)
+|..+...+...|++++|...++...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555556666666666666655554
No 403
>PRK10941 hypothetical protein; Provisional
Probab=57.47 E-value=1.7e+02 Score=27.55 Aligned_cols=75 Identities=7% Similarity=-0.032 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 006744 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526 (632)
Q Consensus 451 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 526 (632)
+.+-.+|.+.++++.|..+.+.+..... .+..-+.--.-.|.+.|.+..|..=++..++..+..|+.......+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 4455567777888888888887776432 23444444555677888888888877777777666666655443333
No 404
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=57.17 E-value=3.2e+02 Score=31.31 Aligned_cols=28 Identities=11% Similarity=0.285 Sum_probs=17.7
Q ss_pred hHHHHHHHHHccC--CHHHHHHHHHHHHhC
Q 006744 310 IYNSIIGGLCRVK--QFDKAYKLFEVTVQD 337 (632)
Q Consensus 310 ~~~~li~~~~~~g--~~~~A~~~~~~m~~~ 337 (632)
....+|.+|++.+ ++++|+.+..++.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3445666666666 666777666666654
No 405
>PF15471 TMEM171: Transmembrane protein family 171
Probab=56.87 E-value=46 Score=30.39 Aligned_cols=16 Identities=19% Similarity=0.492 Sum_probs=8.3
Q ss_pred CCCCcccccccccccc
Q 006744 23 QNRPTVYGGLFSNRQS 38 (632)
Q Consensus 23 ~~~~~~~~~~~~~~~~ 38 (632)
...|++.-+.|.+-+.
T Consensus 247 senPPsY~SIFn~g~t 262 (319)
T PF15471_consen 247 SENPPSYYSIFNYGRT 262 (319)
T ss_pred CCCCCCcchhccCCCc
Confidence 3445555566655444
No 406
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.93 E-value=29 Score=23.91 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=7.7
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 006744 244 LIMGLCKGGRVVRGHELFRE 263 (632)
Q Consensus 244 li~~~~~~g~~~~a~~~~~~ 263 (632)
+|.++...|++++|.+++.+
T Consensus 29 vI~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33444444444444444333
No 407
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.04 E-value=86 Score=23.37 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=5.9
Q ss_pred CChhHHHHHHHHHH
Q 006744 252 GRVVRGHELFREMK 265 (632)
Q Consensus 252 g~~~~a~~~~~~m~ 265 (632)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444443
No 408
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=54.93 E-value=1.5e+02 Score=26.73 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhCCCC----CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744 535 EKIIEVLNEMTQEGCP----PNE-VICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586 (632)
Q Consensus 535 ~~a~~~~~~m~~~g~~----p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 586 (632)
..|.+.|.+..+..-. .+. .+.-.+.....+.|+.++|.+.|.++...+-.+
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 4566666666544211 122 233355666778899999999999998876554
No 409
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=54.90 E-value=2e+02 Score=27.57 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=33.6
Q ss_pred HHHHhhhcccHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 006744 384 FEFLVGKEERIMMALDVFEELKGKGYS--SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441 (632)
Q Consensus 384 l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 441 (632)
+..+..+.|+..+|.+.|+++.+..+. -..+...|+.++....-+.+...++-+..+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 333345677777777777776655432 2234456677776666666666655554443
No 410
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=54.80 E-value=1.6e+02 Score=32.11 Aligned_cols=94 Identities=12% Similarity=-0.015 Sum_probs=44.6
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh
Q 006744 136 SKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215 (632)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 215 (632)
...+.......|+.-+......|+... .|+...|..+++.+...|.-.--.+....|.. . .+......|+.++..
T Consensus 184 ~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG--~-~d~~~If~LldAL~~ 258 (709)
T PRK08691 184 ADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIG--A-VDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHc--c-cCHHHHHHHHHHHHc
Confidence 344444445556655655555555443 36666666666554432210000111112211 1 233334444554433
Q ss_pred cCChhHHHHHHHHHHhCCCC
Q 006744 216 ERNLDACLRVWEEMKKDLVE 235 (632)
Q Consensus 216 ~g~~~~A~~~~~~m~~~~~~ 235 (632)
++...++.++++|...|+.
T Consensus 259 -~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVG 277 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCC
Confidence 6666777777777666643
No 411
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.69 E-value=2.3e+02 Score=28.39 Aligned_cols=54 Identities=15% Similarity=0.043 Sum_probs=32.4
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCcCHH--HHHHHHHHHH--HcCCHHHHHHHHHHHHHC
Q 006744 422 LLEIGEVKKALYLFGKMRGLNLEVNSL--SFSIAIQCHV--ESGDILEACECHNKIIEM 476 (632)
Q Consensus 422 ~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 476 (632)
+...+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34667777777777777765 444443 3333444443 345667777777766653
No 412
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.52 E-value=77 Score=24.00 Aligned_cols=22 Identities=9% Similarity=0.247 Sum_probs=13.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh
Q 006744 489 TKGLCKIGEIDAAMMLVRDCLG 510 (632)
Q Consensus 489 i~~~~~~g~~~~A~~~~~~~~~ 510 (632)
.......|+.++|...+++.++
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3445566777777777766553
No 413
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.32 E-value=2.3e+02 Score=28.16 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 006744 412 VPIYNILMGALLEIGEVKKALYLFGKMRG 440 (632)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 440 (632)
+..+..+..-| .+++...+++++++..
T Consensus 306 Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 306 PQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred hHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 34444444443 3467777777777654
No 414
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.29 E-value=69 Score=25.76 Aligned_cols=45 Identities=16% Similarity=0.300 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHH
Q 006744 326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME 370 (632)
Q Consensus 326 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 370 (632)
+..+-++.+..-++.|+.......+++|.+.+|+..|.++|+-+.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 444555555555666666666666666666666666666665554
No 415
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.85 E-value=2.2e+02 Score=29.94 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=8.9
Q ss_pred CChhHHHHHHHHHHhCCC
Q 006744 217 RNLDACLRVWEEMKKDLV 234 (632)
Q Consensus 217 g~~~~A~~~~~~m~~~~~ 234 (632)
|+.+.+++++++|...|.
T Consensus 259 ~d~~~~l~~~~~l~~~g~ 276 (509)
T PRK14958 259 KAGDRLLGCVTRLVEQGV 276 (509)
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 444455555555554443
No 416
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=53.84 E-value=2e+02 Score=27.31 Aligned_cols=86 Identities=15% Similarity=0.062 Sum_probs=43.6
Q ss_pred HhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhc----CChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh----
Q 006744 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG----GRVVRGHELFREMKENGILIDRAIYGVLIEGLVG---- 285 (632)
Q Consensus 214 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 285 (632)
...+++..+.+.+......+ +......+...|... .+..+|.++|....+.|.. .....|...|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCc
Confidence 35667777777777776543 123333333333322 3456666666655555432 222223333333
Q ss_pred cCCHHHHHHHHHHHHHCCCC
Q 006744 286 EGKVGKACDLLKDLVDSGYR 305 (632)
Q Consensus 286 ~g~~~~a~~~~~~m~~~g~~ 305 (632)
..+..+|...|+...+.|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred ccCHHHHHHHHHHHHHcCCh
Confidence 23555666666666555543
No 417
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=53.68 E-value=8.2 Score=37.72 Aligned_cols=6 Identities=50% Similarity=0.722 Sum_probs=2.6
Q ss_pred cccccc
Q 006744 28 VYGGLF 33 (632)
Q Consensus 28 ~~~~~~ 33 (632)
.++++|
T Consensus 263 ~~~AlF 268 (480)
T KOG2675|consen 263 GRGALF 268 (480)
T ss_pred cHHHHH
Confidence 334444
No 418
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.53 E-value=1.8e+02 Score=26.68 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=47.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 526 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 585 (632)
.++...|++-++++.-.+..... +-|...|..-..+.+..=+.++|..=|....+.+..
T Consensus 238 QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 34446689999999999988873 667788888888888888889999999999888754
No 419
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.31 E-value=1.9e+02 Score=26.51 Aligned_cols=120 Identities=15% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHH
Q 006744 457 HVESGDILEACECHNKIIEMSQVPSV-AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535 (632)
Q Consensus 457 ~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 535 (632)
|.....++.|...|.+.+. +.|+. .-|+.=+.++.+..+++.+..--.+.++-.+...-...+ +..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~f--lg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYF--LGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHH--HHHHHHhhcccc
Q ss_pred HHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744 536 KIIEVLNEM----TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580 (632)
Q Consensus 536 ~a~~~~~~m----~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 580 (632)
+|+..+.+. .+..+++-..+...|..+-.+.=.+.+..++.++..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
No 420
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=52.20 E-value=1.8e+02 Score=26.27 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=17.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 006744 488 LTKGLCKIGEIDAAMMLVRDCLGNVAS 514 (632)
Q Consensus 488 li~~~~~~g~~~~A~~~~~~~~~~~~~ 514 (632)
+.....+.|+.++|.+.|.+++...+.
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 445556777777777777777665443
No 421
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.68 E-value=2.5e+02 Score=30.33 Aligned_cols=39 Identities=10% Similarity=0.020 Sum_probs=17.8
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHH
Q 006744 137 KFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPEL 177 (632)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~ 177 (632)
+.+.......|+..+......++.. -.|+...+..+++.
T Consensus 190 ~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq 228 (618)
T PRK14951 190 EHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQ 228 (618)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHH
Confidence 3333333444555555544444432 23555555555443
No 422
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.38 E-value=70 Score=28.28 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744 551 PNEVICSAIISGMCKHGTLEEARKVFTNLR 580 (632)
Q Consensus 551 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 580 (632)
|+..+|..++.++...|+.++|.+...++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 423
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.15 E-value=28 Score=32.84 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHH
Q 006744 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI 452 (632)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 452 (632)
..-|+..|....+.||+++|+.+++|.++.|+.--..+|..
T Consensus 257 e~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 257 ESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 33478889999999999999999999999887655555443
No 424
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=50.32 E-value=1.8e+02 Score=25.65 Aligned_cols=19 Identities=26% Similarity=0.172 Sum_probs=9.8
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 006744 456 CHVESGDILEACECHNKII 474 (632)
Q Consensus 456 ~~~~~g~~~~a~~~~~~~~ 474 (632)
...+.|++++|..-++++.
T Consensus 38 ~~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHHhccHHHHHHHHHHHH
Confidence 3345555555555555444
No 425
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=50.02 E-value=2.5e+02 Score=27.30 Aligned_cols=78 Identities=6% Similarity=-0.047 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc---cCCHHHHHHHH
Q 006744 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR---VKQFDKAYKLF 331 (632)
Q Consensus 255 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~ 331 (632)
+.-+.++++..+.+. -+......+|..+.+..+.++..+-++++...... +...|...|+.... .-.++.+..+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 445566666666544 35666666677777777777777777777765433 55566665554433 22355555555
Q ss_pred HHH
Q 006744 332 EVT 334 (632)
Q Consensus 332 ~~m 334 (632)
.+.
T Consensus 126 ~~~ 128 (321)
T PF08424_consen 126 EKC 128 (321)
T ss_pred HHH
Confidence 443
No 426
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=49.60 E-value=75 Score=21.08 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=12.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 560 ISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
.-++.+.|++++|+++.+.+.+..
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhC
Confidence 334555555555555555555544
No 427
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.40 E-value=43 Score=31.64 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=26.1
Q ss_pred ChHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006744 516 PTEFK-YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556 (632)
Q Consensus 516 p~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 556 (632)
||... |+..|....+.||+++|+.+++|+.+.|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 44433 556777777777777777777777777755434443
No 428
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=49.26 E-value=1.1e+02 Score=22.85 Aligned_cols=15 Identities=20% Similarity=0.067 Sum_probs=7.4
Q ss_pred cCCHHHHHHHHHHHH
Q 006744 321 VKQFDKAYKLFEVTV 335 (632)
Q Consensus 321 ~g~~~~A~~~~~~m~ 335 (632)
.|+.+.|.+++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344555555555444
No 429
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=49.07 E-value=3.1e+02 Score=27.97 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=82.8
Q ss_pred hcCCHHHHH-HHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHH
Q 006744 180 SQGRIAEML-EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258 (632)
Q Consensus 180 ~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 258 (632)
..|+...|- ++++.++...-.|+.....+.| +...|+++.+...+....+. +.....+..+++....+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 356665554 4555666554456655554444 55789999999888766543 2345677888899999999999999
Q ss_pred HHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303 (632)
Q Consensus 259 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 303 (632)
.+-+-|....+. +..+.....-..-..|-++++.-.++++....
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999988887776 55554444444445677888888888877543
No 430
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=48.87 E-value=1.1e+02 Score=31.77 Aligned_cols=87 Identities=15% Similarity=-0.009 Sum_probs=46.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHH
Q 006744 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYL 434 (632)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 434 (632)
-.|+...|...+.........-...-...+.....+.|...+|-.++..........+-++-.+..+|.-..+++.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 34555555555555443332222222233344444555555666666555554444555566666666667777777777
Q ss_pred HHHHhhC
Q 006744 435 FGKMRGL 441 (632)
Q Consensus 435 ~~~m~~~ 441 (632)
|++..+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 7666554
No 431
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=48.78 E-value=1e+02 Score=29.21 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh----------cCCHHHH
Q 006744 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG----------EGKVGKA 292 (632)
Q Consensus 223 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----------~g~~~~a 292 (632)
.++|+.|.+.++.|.-.++.-+.-.+.+.=.+.+.+.+++.+... ..-|..|+..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 355666666666666666655555555555566666666665542 2224444444432 4666666
Q ss_pred HHHHHH
Q 006744 293 CDLLKD 298 (632)
Q Consensus 293 ~~~~~~ 298 (632)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 665554
No 432
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.71 E-value=3.9e+02 Score=29.08 Aligned_cols=90 Identities=13% Similarity=0.058 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC------CC-HhcHHHHHHHHHhcCCh
Q 006744 290 GKACDLLKDLVDSGYRADL---GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA------PD-FSTVNPLLVCCAEMGRM 359 (632)
Q Consensus 290 ~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------p~-~~~~~~ll~~~~~~~~~ 359 (632)
++-..++.+|..+--.|++ .+...++-.|....+++..+++.+.+...--. ++ ...|...++--.+-|+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 3444566677665333333 34556667777888888888888877653100 01 12244444444455777
Q ss_pred hHHHHHHHHHHHCCCCcccc
Q 006744 360 DNFFKLLAQMEKLKFSVAAD 379 (632)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~ 379 (632)
++|+...-.+.+..-+..++
T Consensus 260 akAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCc
Confidence 77777776665554333333
No 433
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=48.40 E-value=4.4e+02 Score=29.62 Aligned_cols=14 Identities=21% Similarity=0.124 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhCCC
Q 006744 396 MALDVFEELKGKGY 409 (632)
Q Consensus 396 ~a~~~~~~~~~~~~ 409 (632)
+++++|+.+.+..+
T Consensus 1093 ~~~k~~~~l~s~yp 1106 (1304)
T KOG1114|consen 1093 EAEKIYNYLKSSYP 1106 (1304)
T ss_pred HHHHHHHHHHHhCc
Confidence 36666666665544
No 434
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.39 E-value=1.4e+02 Score=26.05 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=14.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 006744 210 IRVLAAERNLDACLRVWEEMKK 231 (632)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~ 231 (632)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3456677777777777776665
No 435
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=48.09 E-value=2.4e+02 Score=26.45 Aligned_cols=65 Identities=17% Similarity=0.042 Sum_probs=28.8
Q ss_pred CCCCcCHHhHHHHHHHHHhcCChh-HHHHHHHHHHH---cC--CcccHHhHHHHHHHHHhcCCHHHHHHHH
Q 006744 232 DLVEADVMAYVTLIMGLCKGGRVV-RGHELFREMKE---NG--ILIDRAIYGVLIEGLVGEGKVGKACDLL 296 (632)
Q Consensus 232 ~~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~---~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~ 296 (632)
.+.+.|......++..+...+.-+ +-.++.+.+.+ .| ..-|......+...|.+.|++.+|...|
T Consensus 43 ~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 43 SEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp TT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 444555555455555544443211 22223333222 11 2235566677777777777777776655
No 436
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=48.05 E-value=2.9e+02 Score=27.39 Aligned_cols=189 Identities=14% Similarity=0.137 Sum_probs=98.3
Q ss_pred cCChhHHHHHHHHHHH-----cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHH
Q 006744 251 GGRVVRGHELFREMKE-----NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325 (632)
Q Consensus 251 ~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 325 (632)
.++++.|++-+-...+ .+...+..++..++..|...++|+.--+.+.-+ .-+.|+..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~L------------------skkrgqlk 86 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLL------------------SKKRGQLK 86 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHH------------------HHHhhHHH
Confidence 5677777766555433 233445556667777777777776544433322 23445555
Q ss_pred HHHHHH--HHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCC--C-ccccHHHHHHHHhhhcccHHHHHHH
Q 006744 326 KAYKLF--EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF--S-VAADLEKFFEFLVGKEERIMMALDV 400 (632)
Q Consensus 326 ~A~~~~--~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~a~~~ 400 (632)
.|.... +-|.-..-.||..|-..++..+.. +.+..+ . --..+...+...+-.+|++++|..+
T Consensus 87 ~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr~-------------VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~i 153 (439)
T KOG1498|consen 87 QAIQSMVQQAMTYIDGTPDLETKIKLIETLRT-------------VTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADI 153 (439)
T ss_pred HHHHHHHHHHHHhccCCCCchhHHHHHHHHHH-------------hhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 554322 122222234455555545443321 111111 0 0123344555666777888888887
Q ss_pred HHHHHhCCCCChhHHHHH------------HHHHHhcCChhhHHHHHHHHhhCCC-CcCHH-----HHHHHHHHHHHcCC
Q 006744 401 FEELKGKGYSSVPIYNIL------------MGALLEIGEVKKALYLFGKMRGLNL-EVNSL-----SFSIAIQCHVESGD 462 (632)
Q Consensus 401 ~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~-----t~~~ll~~~~~~g~ 462 (632)
+.++.- .||.++ ++.|...+|+-.|.-+-+.....-+ .||.. -|..+++...+.+.
T Consensus 154 l~el~V------ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~ 227 (439)
T KOG1498|consen 154 LCELQV------ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRA 227 (439)
T ss_pred HHhcch------hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccc
Confidence 776532 233322 4456666777766655555543322 23322 36666666666677
Q ss_pred HHHHHHHHHHHHHC
Q 006744 463 ILEACECHNKIIEM 476 (632)
Q Consensus 463 ~~~a~~~~~~~~~~ 476 (632)
+=.+.+.|+.+...
T Consensus 228 Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 228 YLNVCRSYRAIYDT 241 (439)
T ss_pred hhhHHHHHHHHhcc
Confidence 76777777666654
No 437
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=47.51 E-value=43 Score=18.57 Aligned_cols=27 Identities=22% Similarity=0.125 Sum_probs=13.6
Q ss_pred cHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006744 393 RIMMALDVFEELKGKGYSSVPIYNILM 419 (632)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~~~~~~~li 419 (632)
+.+.+..+|+++....+.+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 345555555555554444555554443
No 438
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=47.29 E-value=1.7e+02 Score=24.46 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHhhHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHhcHHH
Q 006744 276 YGVLIEGLVGEGKVGKACDLLKDLVDS------GYRADLGIYNSIIGGLCRVKQ-FDKAYKLFEVTVQDDLAPDFSTVNP 348 (632)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ 348 (632)
.+.++.-....+.+...+.+++.+... |. .+...|..++.+..+..- --.+..+|.-|.+.+.+.+..-|..
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~-~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGW-LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhh-cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 344444444455555555555444221 11 255677788887766655 4456777788877777888888888
Q ss_pred HHHHHHhcCChh
Q 006744 349 LLVCCAEMGRMD 360 (632)
Q Consensus 349 ll~~~~~~~~~~ 360 (632)
++.++.+....+
T Consensus 121 li~~~l~g~~~~ 132 (145)
T PF13762_consen 121 LIKAALRGYFHD 132 (145)
T ss_pred HHHHHHcCCCCc
Confidence 888876654333
No 439
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.21 E-value=2.6e+02 Score=26.54 Aligned_cols=95 Identities=13% Similarity=0.004 Sum_probs=47.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhC--C-CCcCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH-----HhH
Q 006744 417 ILMGALLEIGEVKKALYLFGKMRGL--N-LEVNSLSF--SIAIQCHVESGDILEACECHNKIIEMSQV-PSV-----AAY 485 (632)
Q Consensus 417 ~li~~~~~~g~~~~A~~~~~~m~~~--~-~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~~-----~~~ 485 (632)
.|...+-..|+.+.|..++....-. | +..+...- .--+..|...+++-.|.-+.+++.+.-++ |+. ..|
T Consensus 136 ~L~~ikee~Gdi~sA~Dilcn~pVETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKlkyY 215 (439)
T COG5071 136 LLSQIKEEQGDIKSAQDILCNEPVETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKLKYY 215 (439)
T ss_pred HHHHHHHHhcchhHHHHHHhcCchhhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3445556667777776666433211 1 00000000 11133566677888887777777654332 332 235
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744 486 NCLTKGLCKIGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 486 ~~li~~~~~~g~~~~A~~~~~~~~~~ 511 (632)
+.++..-.....+=++-++++++...
T Consensus 216 eL~V~i~Lh~R~Yl~v~~y~~~vY~t 241 (439)
T COG5071 216 ELKVRIGLHDRAYLDVCKYYRAVYDT 241 (439)
T ss_pred HHhheeecccHHHHHHHHHHHHHHHH
Confidence 55554444444555666555555433
No 440
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=46.73 E-value=67 Score=34.38 Aligned_cols=14 Identities=0% Similarity=-0.033 Sum_probs=7.2
Q ss_pred HhHHHHHHHHHhcC
Q 006744 483 AAYNCLTKGLCKIG 496 (632)
Q Consensus 483 ~~~~~li~~~~~~g 496 (632)
..++.++.+|..+.
T Consensus 717 ~~f~~F~~~~k~~~ 730 (830)
T KOG1923|consen 717 QLFVRFVRAYKMAR 730 (830)
T ss_pred HHHHHHHHHHHhhh
Confidence 34555555555544
No 441
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.05 E-value=4.6e+02 Score=29.20 Aligned_cols=70 Identities=17% Similarity=0.127 Sum_probs=56.5
Q ss_pred HHHHHHHHhCCChhHHhHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 006744 156 NALAYCLSRNNLFRAADQV-------PELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228 (632)
Q Consensus 156 ~~li~~~~~~~~~~~a~~l-------~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 228 (632)
.++|..+.+.|..+-|... |+...+.|+++.|++.-..+ -|..+|..|.....+.|+.+-|...|++
T Consensus 624 qaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~ 697 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQR 697 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4577888888888888765 44566789999988876655 4778899999999999999999999988
Q ss_pred HHh
Q 006744 229 MKK 231 (632)
Q Consensus 229 m~~ 231 (632)
.+.
T Consensus 698 ~kn 700 (1202)
T KOG0292|consen 698 TKN 700 (1202)
T ss_pred hhh
Confidence 764
No 442
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=45.80 E-value=2.8e+02 Score=26.55 Aligned_cols=170 Identities=15% Similarity=0.142 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhC--CCCcCHHh-HHHHHHHHHhcCChhHHHHHHH
Q 006744 151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRN--LCKPDVFA-YTAMIRVLAAERNLDACLRVWE 227 (632)
Q Consensus 151 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~ 227 (632)
|++.-...-....+...|-.|..-++++.. +...+......+++. ...-+... --.++....+.++..+.++.++
T Consensus 45 dvVe~~L~~~I~~~s~~f~~a~~~v~el~~--~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~ 122 (291)
T PF10475_consen 45 DVVEKKLSREISEKSDSFFQAMSSVQELQD--ELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLE 122 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----
Q 006744 228 EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG---- 303 (632)
Q Consensus 228 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---- 303 (632)
.+. ....-...++.+...|++..|++++.+..+ -...+..+--.---..++++.....+++.+..
T Consensus 123 ~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~ 191 (291)
T PF10475_consen 123 QIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQLQETLELIEEQLDSDLSKV 191 (291)
T ss_pred HHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -CCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 006744 304 -YRADLGIYNSIIGGLCRVKQFDKAYKLFEV 333 (632)
Q Consensus 304 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 333 (632)
..-|...|..++.+|.-.|+...+.+-+..
T Consensus 192 ~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 192 CQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 443
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=45.68 E-value=2.1e+02 Score=25.17 Aligned_cols=109 Identities=12% Similarity=0.123 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CChHHHHHHHHH-HHHHcC--CHHHHHH
Q 006744 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS-GPTEFKYALTIL-HVCRSG--EAEKIIE 539 (632)
Q Consensus 464 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~p~~~~~~~l~~-~~~~~g--~~~~a~~ 539 (632)
+++.++-.++.. +...+-...+.|++++|.+-++++.+.... +.-...|..+.. ++|..+ .+-+|.-
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Confidence 455555555543 344444566788899988888776533111 111223443444 455553 5667777
Q ss_pred HHHHHHhCCCCCCHH-------HH-HHHHH----------HHHhcCCHHHHHHHHHHHHHC
Q 006744 540 VLNEMTQEGCPPNEV-------IC-SAIIS----------GMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 540 ~~~~m~~~g~~p~~~-------~~-~~l~~----------~~~~~g~~~~A~~~~~~m~~~ 582 (632)
++.-....+ .|+.. .| ..+.+ -..+.|+++.|.++++-|.+.
T Consensus 91 l~~~l~~~~-~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 91 LYSILKDGR-LPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HHHHHhcCC-CCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 777666543 33322 12 12222 234678999999999988764
No 444
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=45.62 E-value=68 Score=21.28 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=9.4
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 006744 491 GLCKIGEIDAAMMLVRDCLG 510 (632)
Q Consensus 491 ~~~~~g~~~~A~~~~~~~~~ 510 (632)
++.+.|++++|.+..+.+++
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 34455555555555555443
No 445
>PF15449 Retinal: Retinal protein
Probab=45.58 E-value=87 Score=35.07 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=6.7
Q ss_pred CCCCCceecccCCCCC
Q 006744 8 RPPKPYFFYGHRKPSQ 23 (632)
Q Consensus 8 r~~~~~~~~~~~~~~~ 23 (632)
|+..+.++.-+++|+|
T Consensus 1040 r~aQPS~P~v~~~PSP 1055 (1287)
T PF15449_consen 1040 RPAQPSLPSVQRSPSP 1055 (1287)
T ss_pred CCCCCCCCcCCCCCCC
Confidence 4444444444444444
No 446
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.97 E-value=1.3e+02 Score=22.78 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=11.6
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 006744 528 VCRSGEAEKIIEVLNEMTQ 546 (632)
Q Consensus 528 ~~~~g~~~~a~~~~~~m~~ 546 (632)
....|+.++|+..+++.++
T Consensus 51 ~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 3455666777666666553
No 447
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=44.64 E-value=4.7e+02 Score=28.86 Aligned_cols=135 Identities=10% Similarity=0.058 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHH---hcCChhHHHHHH
Q 006744 150 HNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA---AERNLDACLRVW 226 (632)
Q Consensus 150 ~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~ 226 (632)
-+...+..||..+.+.|++++... |...+.++. +.+...|-..+.... ..+...++..+|
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~-------------ar~~~~~~~----pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ 173 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQ-------------ARLEMSEIA----PLPPHLWLEWLKDELSMTQSEERKEVEELF 173 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHH-------------HHHHHHHhc----CCChHHHHHHHHHHHhhccCcchhHHHHHH
Confidence 345566778888888887765433 333333332 235556655554333 346677777778
Q ss_pred HHHHhCCCCcCHHhHHHHHHHH-------HhcCChhHHHHHHHHHHHc-CCccc-----HHhHHHHHHHHHhcCCHHHHH
Q 006744 227 EEMKKDLVEADVMAYVTLIMGL-------CKGGRVVRGHELFREMKEN-GILID-----RAIYGVLIEGLVGEGKVGKAC 293 (632)
Q Consensus 227 ~~m~~~~~~p~~~~~~~li~~~-------~~~g~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~a~ 293 (632)
++....-. ++..|.-.++.+ -..++++....+|.+..+. |...+ ...|.-+=..|..+-..++..
T Consensus 174 ekal~dy~--~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 174 EKALGDYN--SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHhcccc--cchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 77665432 333333333322 2335677777777776552 22211 122222223444444456666
Q ss_pred HHHHHHHHCC
Q 006744 294 DLLKDLVDSG 303 (632)
Q Consensus 294 ~~~~~m~~~g 303 (632)
.+|..-...+
T Consensus 252 a~~~~el~~~ 261 (881)
T KOG0128|consen 252 ALFVRELKQP 261 (881)
T ss_pred HHHHHHHhcc
Confidence 6666655554
No 448
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.61 E-value=1.4e+02 Score=24.92 Aligned_cols=60 Identities=22% Similarity=0.222 Sum_probs=33.3
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC
Q 006744 402 EELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461 (632)
Q Consensus 402 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 461 (632)
+.+.+.|..-+.--..++..+...++.-.|.++++++.+.+...+..|....++.+...|
T Consensus 10 ~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334444444333355566666666666677777777776665555555444444444444
No 449
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=44.49 E-value=2.9e+02 Score=26.30 Aligned_cols=48 Identities=19% Similarity=0.026 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChhhHHHHHHHHhhCCC
Q 006744 394 IMMALDVFEELKGKGYSSVPIYNILMGALLE----IGEVKKALYLFGKMRGLNL 443 (632)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~ 443 (632)
...|.++|....+.+ .......|...|.. ..+..+|...|++..+.|.
T Consensus 93 ~~~A~~~~~~~a~~g--~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 93 KTKAADWYRCAAADG--LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGN 144 (292)
T ss_pred HHHHHHHHHHHhhcc--cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCC
Confidence 445555555444443 22223334444433 2255666666666666553
No 450
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=44.33 E-value=1.2e+02 Score=28.25 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=12.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 006744 487 CLTKGLCKIGEIDAAMMLVRDC 508 (632)
Q Consensus 487 ~li~~~~~~g~~~~A~~~~~~~ 508 (632)
.|..-|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3445555666666666666553
No 451
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=44.18 E-value=1.3e+02 Score=24.82 Aligned_cols=65 Identities=15% Similarity=0.105 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744 447 SLSFSIAIQCHVESG---DILEACECHNKIIEMSQ-VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 447 ~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 511 (632)
..+--.+..++.++. +..+...+++.+.+... .-.....-.|.-++.+.+++++++++.+.+++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 333333444444443 34456666666665221 112222333455667777777777777776654
No 452
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.95 E-value=4.1e+02 Score=27.95 Aligned_cols=159 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcC------------HHhHHHHHHHHHhcCC-------hhHHHHHHHHHHHcCCcc--
Q 006744 213 LAAERNLDACLRVWEEMKKDLVEAD------------VMAYVTLIMGLCKGGR-------VVRGHELFREMKENGILI-- 271 (632)
Q Consensus 213 ~~~~g~~~~A~~~~~~m~~~~~~p~------------~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~p-- 271 (632)
+.....+++|...|.-....- .|+ +.+...+...+..+|+ +++++-.|+......+.|
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~-d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~s 326 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVH-DPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFS 326 (665)
T ss_pred eecchHHHHHHHHHHHHHhhc-CCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccc
Q ss_pred -----------cHHhHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-ccCCHHHHHHHHHHHHh
Q 006744 272 -----------DRAIYGVL---IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC-RVKQFDKAYKLFEVTVQ 336 (632)
Q Consensus 272 -----------~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~ 336 (632)
|...|-+| |..+.+.|.+..|.++-+-+.+....-|......+|+.|+ ++.+|.-.++++++...
T Consensus 327 g~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 327 GNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred ccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q ss_pred CC---CCCCHhcHHHHHHHHHhcCC---hhHHHHHHHHHHHC
Q 006744 337 DD---LAPDFSTVNPLLVCCAEMGR---MDNFFKLLAQMEKL 372 (632)
Q Consensus 337 ~~---~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~ 372 (632)
.+ .-|+..-=.++...|..... -+.|...+.++.+.
T Consensus 407 ~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 407 MNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred hccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
No 453
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.57 E-value=2.5e+02 Score=26.02 Aligned_cols=58 Identities=14% Similarity=0.136 Sum_probs=43.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744 523 LTILHVCRSGEAEKIIEVLNEMTQE----G-CPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580 (632)
Q Consensus 523 ~l~~~~~~~g~~~~a~~~~~~m~~~----g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 580 (632)
.+...|...|++++|+++|+.+... | ..+...+...+..++.+.|+.++...+.=+|.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3677788999999999999988532 3 23445566778888889999998887765554
No 454
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.51 E-value=2.3e+02 Score=25.03 Aligned_cols=129 Identities=12% Similarity=0.033 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHH
Q 006744 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI--AIQCHVESGDILEACECHNKIIEMSQVPS--VAAYNCLTK 490 (632)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~--ll~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~ 490 (632)
|..++.... .+.. +.....+.+....-.-...++.. +...+...+++++|...++........-+ ..+--.|..
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLAr 134 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLAR 134 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 444444443 2222 44455555554321222222222 34467788999999988887775322211 122233556
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006744 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548 (632)
Q Consensus 491 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 548 (632)
.....|.+|+|+..++...+. .-.......-.+.+...|+-++|..-|++..+.+
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~---~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEE---SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHhhhHHHHHHHHhccccc---cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 677889999999998774422 1122223345677888899999999999988874
No 455
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.23 E-value=1.1e+02 Score=25.68 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=34.7
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcC
Q 006744 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357 (632)
Q Consensus 295 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 357 (632)
+.+.+.+.|++++.. -..++..+.+.++.-.|.++++++.+.+...+..|....++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334445555553332 23455666666666677777777776665555555555555555554
No 456
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=43.03 E-value=4.5e+02 Score=28.20 Aligned_cols=262 Identities=15% Similarity=0.065 Sum_probs=116.9
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcc--ccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-Chh
Q 006744 353 CAEMGRMDNFFKLLAQMEKLKFSVA--ADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIG-EVK 429 (632)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~ 429 (632)
....-+.+..++.+++..-.+.++. ..+...-+..++-...-+-|..++..-.+.+.....+-..+.-+.+-.| +-+
T Consensus 407 ~I~~Wnvd~gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e 486 (878)
T KOG2005|consen 407 MIQLWNVDKGLEQLDKYLYSDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQRE 486 (878)
T ss_pred hhheecchhhHHHHHHHhhcCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchH
Confidence 3445567777777776654332211 1111111112233345556667776665554433333333333333333 334
Q ss_pred hHHHHHH-HHhhCCCCcCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCC-C--CCHHhHHHHHHHHHhcCCHHHHHH
Q 006744 430 KALYLFG-KMRGLNLEVNSLSFSIAIQC--HVESGDILEACECHNKIIEMSQ-V--PSVAAYNCLTKGLCKIGEIDAAMM 503 (632)
Q Consensus 430 ~A~~~~~-~m~~~~~~p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~-~--p~~~~~~~li~~~~~~g~~~~A~~ 503 (632)
+....+. -|-....+++...+..+--+ |+-.-+-+-+..+++.+.+.+- . -.-.-|-.|.-++.-.|+-+.+..
T Consensus 487 ~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~ 566 (878)
T KOG2005|consen 487 EVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDA 566 (878)
T ss_pred HHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHH
Confidence 4553333 33444445556555555433 3344466677777777766542 1 112223334444333343333333
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHc--CCHHHH--HHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCC---HHHHH
Q 006744 504 LVRDCLGNVASGPTEFKYALTILHVCRS--GEAEKI--IEVLNEMTQEGCPPNEVI---CSAIISGMCKHGT---LEEAR 573 (632)
Q Consensus 504 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~a--~~~~~~m~~~g~~p~~~~---~~~l~~~~~~~g~---~~~A~ 573 (632)
+.+....- ..|-...-+.++..|... |+.-.. ..++..--+.. .+... +..|.-++...|+ .+.+.
T Consensus 567 ~~e~~~~i--~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~--~~~e~~~~~avLgiAliAMgeeig~eM~l 642 (878)
T KOG2005|consen 567 VVETIKAI--EGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHD--ADLESEQELAVLGIALIAMGEEIGSEMVL 642 (878)
T ss_pred HHHHHHHh--hhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCc--cchhhhccchhhhhhhhhhhhhhhhHHHH
Confidence 33322211 123333444555555544 444333 22222111111 11111 3344444444443 46677
Q ss_pred HHHHHHHHCCCC--------------CCCChhhHHHHHHHHhhhchhHHHHhhhhhhch
Q 006744 574 KVFTNLRERKLL--------------TEANTIVYDEILIEHMKKKTADLVLSGLKFFGL 618 (632)
Q Consensus 574 ~~~~~m~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~v~~~l~~~~~ 618 (632)
+.|..|...|-. +.+..+.--..+..+....+.+.+++.+-.+|+
T Consensus 643 R~f~h~l~yge~~iRravPLal~llsvSNPq~~vlDtLsk~shd~D~eva~naIfamGL 701 (878)
T KOG2005|consen 643 RHFGHLLHYGEPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDGDLEVAMNAIFAMGL 701 (878)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCcchHHHHHHHHHhcc
Confidence 777777766531 112222333445555556666766666655553
No 457
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.94 E-value=3.8e+02 Score=27.27 Aligned_cols=31 Identities=13% Similarity=-0.114 Sum_probs=16.9
Q ss_pred CChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744 252 GRVVRGHELFREMKENGILIDRAIYGVLIEG 282 (632)
Q Consensus 252 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 282 (632)
.+.+.|+.++..|.+.|..|....-..++.+
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5566666666666666655554433333333
No 458
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.60 E-value=5.4e+02 Score=28.68 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=40.7
Q ss_pred CCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH--HhHHHHHHHHHhcCChhHHHHHHHHHH
Q 006744 165 NNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV--FAYTAMIRVLAAERNLDACLRVWEEMK 230 (632)
Q Consensus 165 ~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 230 (632)
-|=-++|+.++......|+++.|.++-..- |+. .++..-...|.+.+++..|-++|-++.
T Consensus 355 ~~vndE~R~vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 355 YGVNDEARDVWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred eeeccchHHHHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 344567888888888888888888764332 222 233444456777888888888888774
No 459
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=41.07 E-value=3.3e+02 Score=26.02 Aligned_cols=69 Identities=12% Similarity=0.096 Sum_probs=38.8
Q ss_pred hcccHHHHHHHH-HHHHhCCCCChh----HHHHHHHHHHhcCChh-hHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH
Q 006744 390 KEERIMMALDVF-EELKGKGYSSVP----IYNILMGALLEIGEVK-KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI 463 (632)
Q Consensus 390 ~~g~~~~a~~~~-~~~~~~~~~~~~----~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 463 (632)
+...+++..... +.|+..+.++.. +|..++++---+.+-+ -|.+.++. ..+|..++.+++..|+.
T Consensus 267 ~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g~s 337 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQS 337 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCChH
Confidence 334455554444 456667766433 4777766544332211 12333333 34688899999999987
Q ss_pred HHHH
Q 006744 464 LEAC 467 (632)
Q Consensus 464 ~~a~ 467 (632)
+..+
T Consensus 338 EL~L 341 (412)
T KOG2297|consen 338 ELEL 341 (412)
T ss_pred HHHH
Confidence 7554
No 460
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=40.89 E-value=4.2e+02 Score=29.02 Aligned_cols=46 Identities=11% Similarity=0.191 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006744 463 ILEACECHNKII-EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510 (632)
Q Consensus 463 ~~~a~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 510 (632)
.++....+..+. +.|+..+......++... .|++..|+.++++++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 344455555444 457777777776666544 6999999999988664
No 461
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.46 E-value=5.6e+02 Score=28.56 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=32.0
Q ss_pred HHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHH
Q 006744 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM 438 (632)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 438 (632)
.....++...|+.+++..+-.-+.. |..++.-+++.|.+++|++++..-
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~~d--------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLIKD--------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445566666666554443332 778888888888888888877643
No 462
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=40.23 E-value=80 Score=24.70 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcC--CHHHHHHHHHHHHhCCC
Q 006744 146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG--RIAEMLEILEKMRRNLC 199 (632)
Q Consensus 146 ~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g--~~~~a~~~~~~m~~~~~ 199 (632)
.|+.|+ +|+.+.++...++|+++.+.|.+.| ..+.|.++-..+.+.|+
T Consensus 61 sGy~Pt------ViD~lrRC~T~EEALEVInylek~GEIt~e~A~eLr~~L~~kGv 110 (128)
T PF09868_consen 61 SGYNPT------VIDYLRRCKTDEEALEVINYLEKRGEITPEEAKELRSILVKKGV 110 (128)
T ss_pred cCCCCh------HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhH
Confidence 455665 4666788888888888888888888 34556666655555543
No 463
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.03 E-value=2e+02 Score=23.30 Aligned_cols=43 Identities=12% Similarity=0.175 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 006744 535 EKIIEVLNEMTQEGCPPNE-VICSAIISGMCKHGTLEEARKVFT 577 (632)
Q Consensus 535 ~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 577 (632)
++..++|..|..+|+-... ..|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456677777777664443 356666677777888888888775
No 464
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.74 E-value=2.5e+02 Score=29.49 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=14.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCc
Q 006744 243 TLIMGLCKGGRVVRGHELFREMKENGIL 270 (632)
Q Consensus 243 ~li~~~~~~g~~~~a~~~~~~m~~~~~~ 270 (632)
.+++++ ..+++++|+.+++++...|..
T Consensus 247 ~Li~al-~~~d~~~Al~~l~~Ll~~G~~ 273 (504)
T PRK14963 247 GIAAAL-AQGDAAEALSGAAQLYRDGFA 273 (504)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCCC
Confidence 334433 335666666666666666544
No 465
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=39.20 E-value=3.1e+02 Score=25.14 Aligned_cols=93 Identities=10% Similarity=0.155 Sum_probs=52.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-----------CChHHHHHHHHHH
Q 006744 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS-----------GPTEFKYALTILH 527 (632)
Q Consensus 459 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------~p~~~~~~~l~~~ 527 (632)
+..+.+--.++.+-....++.-+..-...++ +...|+...|+..++......+. .|.+.....++..
T Consensus 171 klsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~ 248 (333)
T KOG0991|consen 171 KLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQA 248 (333)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHH
Confidence 3333333333333333344444444444433 45677777777777665543222 2444444444443
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 006744 528 VCRSGEAEKIIEVLNEMTQEGCPPNEV 554 (632)
Q Consensus 528 ~~~~g~~~~a~~~~~~m~~~g~~p~~~ 554 (632)
|..+++++|.+++.++-+.|+.|...
T Consensus 249 -~~~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 249 -CLKRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred -HHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 45578899999999999998877544
No 466
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.06 E-value=1.9e+02 Score=22.67 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=13.1
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006744 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548 (632)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 548 (632)
.||...| ++.+-.+.|-.+++...+.++...|
T Consensus 68 ~pdL~p~--~AL~a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 68 YPDLEPW--AALCAWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp -GGGHHH--HHHHHHHCT-HHHHHHHHHHHCT-S
T ss_pred CccHHHH--HHHHHHhhccHHHHHHHHHHHHhCC
Confidence 3444444 2233334455555555555444443
No 467
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.04 E-value=1.1e+02 Score=23.90 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=24.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHH
Q 006744 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244 (632)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 244 (632)
+|..+.++...++|+++.+.|.+.| ..+...-+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4566778888888888888888887 4444443333
No 468
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.89 E-value=3.4e+02 Score=28.14 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=23.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccH
Q 006744 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR 273 (632)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 273 (632)
+...+..++.++...+....|+.++++|.+.|..|..
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 4555555666555555556777777777777766543
No 469
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.43 E-value=1.8e+02 Score=22.29 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=16.5
Q ss_pred HHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHH
Q 006744 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE 403 (632)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 403 (632)
++++...+....+....-+..+|++.|+-+.|.+-|+.
T Consensus 60 ~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 60 LEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 33333333333334444444444444444444444444
No 470
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.38 E-value=4.2e+02 Score=26.54 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=27.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHH--hHHHHHHHHHh--cCChhHHHHHHHHHHh
Q 006744 180 SQGRIAEMLEILEKMRRNLCKPDVF--AYTAMIRVLAA--ERNLDACLRVWEEMKK 231 (632)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~ 231 (632)
..+++..|.++|+.+.+. ++++.. .+..+..+|.. .-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345666666666666654 333333 34444444443 3455677777766554
No 471
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=38.10 E-value=89 Score=31.62 Aligned_cols=66 Identities=24% Similarity=0.130 Sum_probs=29.5
Q ss_pred hcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 006744 390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457 (632)
Q Consensus 390 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 457 (632)
+.+++..|..=+....+..+.....|-.-..++...+.+.+|+..|+.... +.|+..-+...++-|
T Consensus 50 K~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 50 KVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred eechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 333333343333333333322233333333444445555555555555443 455555555555444
No 472
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=37.94 E-value=1.9e+02 Score=30.78 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=50.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCC--CCcCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHCCCCCCHHhHHHH
Q 006744 417 ILMGALLEIGEVKKALYLFGKMRGLN--LEVNSLSFSIAIQCHVESGDIL------EACECHNKIIEMSQVPSVAAYNCL 488 (632)
Q Consensus 417 ~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~------~a~~~~~~~~~~~~~p~~~~~~~l 488 (632)
.|+.+|...|++..+.++++.+.... -+.=...|+..|+.+.+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999998887642 2233456778888888888764 3444444433 45577777777
Q ss_pred HHHHH
Q 006744 489 TKGLC 493 (632)
Q Consensus 489 i~~~~ 493 (632)
+.+-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 66543
No 473
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.53 E-value=3.5e+02 Score=28.23 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=10.3
Q ss_pred CChhHHHHHHHHHHHcCCc
Q 006744 252 GRVVRGHELFREMKENGIL 270 (632)
Q Consensus 252 g~~~~a~~~~~~m~~~~~~ 270 (632)
|+.+.|+.+++.+...|..
T Consensus 259 ~d~~~al~~l~~L~~~g~~ 277 (486)
T PRK14953 259 SDVDEAIKFLRTLEEKGYN 277 (486)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 4555555555555555444
No 474
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.42 E-value=3.5e+02 Score=25.26 Aligned_cols=201 Identities=15% Similarity=0.059 Sum_probs=113.5
Q ss_pred CCCcCHHhHHHHHHHH-HhcCChhHHHHHHHHHHHcCCcccHHh---HHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC
Q 006744 233 LVEADVMAYVTLIMGL-CKGGRVVRGHELFREMKENGILIDRAI---YGVLIEGLVGEGKVGKACDLLKDLVDS---GYR 305 (632)
Q Consensus 233 ~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~ 305 (632)
+-+||+..-|..-.+- .+..+.++|+.-|++..+....-...- ...++..+.+.|++++..+.|.+|..- .+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4466665544332221 233578889999988887543333333 345677888888998888888887631 111
Q ss_pred --CCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC-----CCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---
Q 006744 306 --ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD-----DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS--- 375 (632)
Q Consensus 306 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--- 375 (632)
-+..+.|++++......+.+-..++|+.-.+. +-..--.|-.-+...|...+++.+..++++++....-.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 24456677777766666666666666543321 11111123345667777778888877777777543211
Q ss_pred --------ccccHHHHHHHHhhhcccHHHHHHHHHHHHh--CCCCChhHHHHHH----HHHHhcCChhhHHH
Q 006744 376 --------VAADLEKFFEFLVGKEERIMMALDVFEELKG--KGYSSVPIYNILM----GALLEIGEVKKALY 433 (632)
Q Consensus 376 --------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~li----~~~~~~g~~~~A~~ 433 (632)
--..+|..-+.+|....+-.....+++.... ...+.+.+...+- ....+.|++++|..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 0123455556667666666667777766442 2233333222221 12345677776654
No 475
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.32 E-value=4.4e+02 Score=26.39 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=25.2
Q ss_pred hhhcccHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 006744 388 VGKEERIMMALDVFEELKGKGYS---SVPIYNILMGALLEIGEVKKALYLFGKMRG 440 (632)
Q Consensus 388 ~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 440 (632)
|..+|+++.|.+.|.+..+-... .+..|-.+|..-.-.|+|.....+..+...
T Consensus 160 y~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 160 YLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 44445555555555443332221 233344555555555666655555555443
No 476
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.25 E-value=5e+02 Score=27.01 Aligned_cols=23 Identities=4% Similarity=0.095 Sum_probs=12.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCcC
Q 006744 215 AERNLDACLRVWEEMKKDLVEAD 237 (632)
Q Consensus 215 ~~g~~~~A~~~~~~m~~~~~~p~ 237 (632)
+.++.+.|+.++.+|...|..|.
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~ 277 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYE 277 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHH
Confidence 44556666666666655554443
No 477
>PRK09857 putative transposase; Provisional
Probab=36.97 E-value=3.2e+02 Score=26.22 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006744 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307 (632)
Q Consensus 242 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 307 (632)
..++.-....++.++..++++.+.+. ........-++..-+.+.|..+++.++..+|...|+..+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444455555555555555544 222223333455555555655666677777777666543
No 478
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.96 E-value=41 Score=27.38 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHHHhCCCCCC
Q 006744 323 QFDKAYKLFEVTVQDDLAPD 342 (632)
Q Consensus 323 ~~~~A~~~~~~m~~~~~~p~ 342 (632)
.-.+|..+|++|++.|-.||
T Consensus 110 sk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 110 SKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred cCCcHHHHHHHHHhCCCCCc
Confidence 33444555555555554444
No 479
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=36.88 E-value=2e+02 Score=22.44 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=7.4
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 006744 455 QCHVESGDILEACECHNK 472 (632)
Q Consensus 455 ~~~~~~g~~~~a~~~~~~ 472 (632)
..|...|+.++|...+.+
T Consensus 10 ~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 10 MEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHT-HHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHH
Confidence 334444444444444443
No 480
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=36.80 E-value=3.8e+02 Score=28.13 Aligned_cols=20 Identities=5% Similarity=0.169 Sum_probs=11.6
Q ss_pred CChhHHHHHHHHHHHcCCcc
Q 006744 252 GRVVRGHELFREMKENGILI 271 (632)
Q Consensus 252 g~~~~a~~~~~~m~~~~~~p 271 (632)
|+..+|+.+++++...|..|
T Consensus 271 ~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 271 RETEKAINLINKLYGSSVNL 290 (507)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 55666666666666555543
No 481
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.76 E-value=54 Score=22.88 Aligned_cols=49 Identities=6% Similarity=0.156 Sum_probs=27.8
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh
Q 006744 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250 (632)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 250 (632)
|....++.++..+++..-.++++..+.+..+.|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4445566666666666666666666666666662 445555544544443
No 482
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.52 E-value=4.7e+02 Score=27.94 Aligned_cols=86 Identities=10% Similarity=0.109 Sum_probs=45.6
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006744 494 KIGEIDAAMMLVRDCLGNVASGPT----EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTL 569 (632)
Q Consensus 494 ~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 569 (632)
+..++..+.+.|..-+.......- ......|-.+|....+.+.|.++++++.+.. +.+..+-..+..+....|+-
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhcch
Confidence 344566666666554433222111 1123344445556667777777777776653 33444444455555666776
Q ss_pred HHHHHHHHHHH
Q 006744 570 EEARKVFTNLR 580 (632)
Q Consensus 570 ~~A~~~~~~m~ 580 (632)
++|+.......
T Consensus 445 e~AL~~~~~~~ 455 (872)
T KOG4814|consen 445 EEALTCLQKIK 455 (872)
T ss_pred HHHHHHHHHHH
Confidence 77766655543
No 483
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=36.43 E-value=4.4e+02 Score=26.18 Aligned_cols=123 Identities=11% Similarity=0.068 Sum_probs=70.2
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 006744 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL---VGEGKVGKACDLLKDLVDSGYRADLGIYN 312 (632)
Q Consensus 236 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 312 (632)
--+.++..+-..+..+|+.+.|.+++++..-. =...+......+ ...|.. ++ .-...-|...|-
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~----~e~~~~~~F~~~~~~~~~g~~--------rL-~~~~~eNR~ffl 104 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFA----FERAFHPSFSPFRSNLTSGNC--------RL-DYRRPENRQFFL 104 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHHHHHhhhhhcccccCcc--------cc-CCccccchHHHH
Confidence 35667777777888888888888887776431 000111111000 001100 00 000111444454
Q ss_pred HH---HHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHH-hcCChhHHHHHHHHHHH
Q 006744 313 SI---IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA-EMGRMDNFFKLLAQMEK 371 (632)
Q Consensus 313 ~l---i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 371 (632)
++ |..+.+.|-+..|+++.+-+...+..-|......+|+.|+ +.++++-..++.+....
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44 5667888999999999998887765556666666776665 56677666666665443
No 484
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=36.21 E-value=1.9e+02 Score=27.51 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=20.6
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006744 294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335 (632)
Q Consensus 294 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 335 (632)
++++.|...++.|.-.++.-+.-.+.+.=.+.+++.+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344444444555555544444444444445555555555444
No 485
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=36.05 E-value=4.6e+02 Score=27.50 Aligned_cols=96 Identities=11% Similarity=0.133 Sum_probs=55.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCC----HHHHHHHHHHHHhCCCCcCHHhHH
Q 006744 132 PTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR----IAEMLEILEKMRRNLCKPDVFAYT 207 (632)
Q Consensus 132 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~----~~~a~~~~~~m~~~~~~~~~~~~~ 207 (632)
.+.-...+..+..+.|+..+...+..+.++ ..|...++..+++.+...|. .+.+..++ |.. |.....
T Consensus 180 ~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~--a~Gs~RDalslLDq~i~~~~~~It~~~v~~~l------G~~-~~~~~~ 250 (515)
T COG2812 180 LEEIAKHLAAILDKEGINIEEDALSLIARA--AEGSLRDALSLLDQAIAFGEGEITLESVRDML------GLT-DIEKLL 250 (515)
T ss_pred HHHHHHHHHHHHHhcCCccCHHHHHHHHHH--cCCChhhHHHHHHHHHHccCCcccHHHHHHHh------CCC-CHHHHH
Confidence 445567777777888888888776655543 45677777777777776552 22222222 222 222222
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 006744 208 AMIRVLAAERNLDACLRVWEEMKKDLVEAD 237 (632)
Q Consensus 208 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 237 (632)
.++.+ ...++..+++..++++.+.|..+.
T Consensus 251 ~~~~~-i~~~d~~~~~~~~~~l~~~G~~~~ 279 (515)
T COG2812 251 SLLEA-ILKGDAKEALRLINELIEEGKDPE 279 (515)
T ss_pred HHHHH-HHccCHHHHHHHHHHHHHhCcCHH
Confidence 23322 245677777777777777765443
No 486
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=36.02 E-value=4e+02 Score=25.50 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHhcCChhhHHH
Q 006744 412 VPIYNILMGALLEIGEVKKALY 433 (632)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~ 433 (632)
...|..|+.+++..|+.+-.+-
T Consensus 321 lK~yaPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELELL 342 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHHH
Confidence 3458889999999998776543
No 487
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.81 E-value=3.6e+02 Score=27.20 Aligned_cols=133 Identities=12% Similarity=0.070 Sum_probs=0.0
Q ss_pred cccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCChhhHHHHHHH-------HhhCCCCc--
Q 006744 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGYS--SVPIYNILMGALLEIGEVKKALYLFGK-------MRGLNLEV-- 445 (632)
Q Consensus 377 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~~~~~p-- 445 (632)
+..+|..-..+--+..--....+-...+.+.+.. +...-..++..+....++.+.++..+. ..+.|-.|
T Consensus 38 DEFvYQfqsfc~yr~~~~~~~~~e~~~l~~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~ 117 (404)
T PF10255_consen 38 DEFVYQFQSFCQYRSKLKKKTEEEIQLLKENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLY 117 (404)
T ss_pred HHHHHHhhhHHHHhhhccCCCHHHHHHHHhhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHH
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 446 ---NSLSFSIAIQCHVESGDILEACECHNKI-------IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 446 ---~~~t~~~ll~~~~~~g~~~~a~~~~~~~-------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
.-.+...+++.++-.||+..|+++++.+ ...-..-.+.+|-.+.-+|...+++.+|++.|..++
T Consensus 118 ~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 118 KMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.65 E-value=6.2e+02 Score=27.62 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006744 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLV 234 (632)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 234 (632)
.+..++..+. .++...++++.+++.+.|.
T Consensus 253 ~i~~Ll~aL~-~~d~~~~l~l~~~l~~~G~ 281 (700)
T PRK12323 253 YLVRLLDALA-AEDGAALLAIADEMAGRSL 281 (700)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCC
Confidence 3444444433 4556666666666655543
No 489
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.52 E-value=3.9e+02 Score=25.26 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=32.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHH----HHhCCCCCCHhcHHHHH-HHHHhcCChhHHHHHH
Q 006744 312 NSIIGGLCRVKQFDKAYKLFEV----TVQDDLAPDFSTVNPLL-VCCAEMGRMDNFFKLL 366 (632)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~----m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~ 366 (632)
.-+|..+.+.|.+.+|+.+... +.+.+-+++..+...+= .+|....++.++..-+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSL 188 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASL 188 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHH
Confidence 3577888899999998877654 34445556655543322 3444444444444433
No 490
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=35.40 E-value=6.6e+02 Score=27.89 Aligned_cols=178 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHh--------CCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccH
Q 006744 323 QFDKAYKLFEVTVQ--------DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI 394 (632)
Q Consensus 323 ~~~~A~~~~~~m~~--------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (632)
..++...+++.... .++..+......++..+ .|+..+++.+++.+...... ...+..
T Consensus 169 s~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~-------------~~~~~i 233 (725)
T PRK13341 169 SDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPP-------------DEDGLI 233 (725)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccc-------------CCCCce
Q ss_pred HHHHHHHHHHHhC--------CCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC-----
Q 006744 395 MMALDVFEELKGK--------GYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG----- 461 (632)
Q Consensus 395 ~~a~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g----- 461 (632)
.-..+..++.... +........+++..+.. ++++.|+..+.+|.+.|..|....-..++.+....|
T Consensus 234 ~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirg-sD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~ 312 (725)
T PRK13341 234 DITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRG-SDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQ 312 (725)
T ss_pred eccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChH
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh
Q 006744 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517 (632)
Q Consensus 462 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 517 (632)
...-|...+......|+.--........-.++.+-+-..+ ..+.++++.....+.
T Consensus 313 al~~~~~~~~a~~~~g~pE~~~~laq~~~~la~apKSns~-~a~~~a~~~~~~~~~ 367 (725)
T PRK13341 313 ALVVVEACAAAFERVGLPEGLYPLAQAALYLATAPKSNSV-LGFFDALKKVREEQV 367 (725)
T ss_pred HHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCccHH-HHHHHHHHHHHhcCC
No 491
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.05 E-value=48 Score=27.02 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=20.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHH
Q 006744 563 MCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE 599 (632)
Q Consensus 563 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~ 599 (632)
..+.|.-.+|..+|++|++.|-.|+. ++.|+.+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd----W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD----WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc----HHHHHHH
Confidence 44556666777777777777766633 4455543
No 492
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=34.90 E-value=1.9e+02 Score=21.53 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=37.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 539 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
++|+-....|+..|...|..+++.+.-.--.+...++++.|-...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~~ 73 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSGS 73 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHccc
Confidence 788888888999999999999998877777888888888886543
No 493
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.80 E-value=5.1e+02 Score=27.15 Aligned_cols=123 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCcccHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 006744 244 LIMGLCKGGRVVRGHELFREMKENGILIDRA-IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322 (632)
Q Consensus 244 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 322 (632)
++.-|.+.+++++|..++..|.-........ ..+.+++.+.+..--++.+..++.+...=..|....-...+..|.. -
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d-~ 492 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD-P 492 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-H
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006744 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK 373 (632)
Q Consensus 323 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 373 (632)
=.+-|.++|..|...+ .|..........|+.|...+++..+...|
T Consensus 493 V~~~aRRfFhhLLR~~------rfekAFlLAvdi~~~DLFmdlh~~A~~~g 537 (545)
T PF11768_consen 493 VSDLARRFFHHLLRYQ------RFEKAFLLAVDIGDRDLFMDLHYLAKDKG 537 (545)
T ss_pred HHHHHHHHHHHHHHhh------HHHHHHHHHHhccchHHHHHHHHHHHhcc
No 494
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=34.77 E-value=1.3e+02 Score=21.40 Aligned_cols=50 Identities=28% Similarity=0.347 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--------------CChhhHHHHHHHHhhCC
Q 006744 393 RIMMALDVFEELKGKGYSSVPIYNILMGALLEI--------------GEVKKALYLFGKMRGLN 442 (632)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~ 442 (632)
+.+.|..++..+......++..||++...+.++ |....|++-|.+|...+
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF~iskl~pd~~~LG~L~~aL~ey~~~~g~~ 75 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKFQISKLQPDENILGELAAALEEYKKMVGAD 75 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHccchhhhcCccHHHHHHHHHHHHHHHHHcCCC
No 495
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=34.62 E-value=2.5e+02 Score=22.78 Aligned_cols=79 Identities=11% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC--HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006744 486 NCLTKGLCKIGE--IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563 (632)
Q Consensus 486 ~~li~~~~~~g~--~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 563 (632)
+..+...+..|- .++--.-|.+.... |+...| +..+-++.+....+.|++.+-..-+.+|
T Consensus 33 ~~~~~~~~~hg~et~EEfd~ry~~yf~r----~~iD~w--------------EvrkglN~l~~yDlVP~pkvIEaaLRA~ 94 (149)
T KOG4077|consen 33 NTFIKYSMEHGPETAEEFDARYEKYFNR----PEIDGW--------------EVRKGLNNLFDYDLVPSPKVIEAALRAC 94 (149)
T ss_pred hhhhhhHhhcCcccHHHHHHHHHHHcCc----ccchHH--------------HHHHHHHhhhccccCCChHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 006744 564 CKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 564 ~~~g~~~~A~~~~~~m~~~ 582 (632)
.+.+|+..|.++|+-++.+
T Consensus 95 RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 95 RRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHhccHHHHHHHHHHHHHh
No 496
>PRK12798 chemotaxis protein; Reviewed
Probab=34.46 E-value=5e+02 Score=26.18 Aligned_cols=226 Identities=14% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHH-HHHHcCCH
Q 006744 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ-CHVESGDI 463 (632)
Q Consensus 385 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~-~~~~~g~~ 463 (632)
...|.-.|.--...+.+-.-...+..+......++... .|+.++|.+.+..+.....++...-|..|+. ......+.
T Consensus 87 a~iy~lSGGnP~vlr~L~~~d~~~~~d~~L~~g~laY~--~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP 164 (421)
T PRK12798 87 ALIYLLSGGNPATLRKLLARDKLGNFDQRLADGALAYL--SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDP 164 (421)
T ss_pred HHhhHhcCCCHHHHHHHHHcCCCChhhHHHHHHHHHHH--cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCH
Q ss_pred HHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 006744 464 LEACECHNKIIEM--SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541 (632)
Q Consensus 464 ~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 541 (632)
.+|+++|+...=. |.-........-+......|+.+++..+-.+........|-...|........-.-.-+.-.+.+
T Consensus 165 ~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l 244 (421)
T PRK12798 165 ATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARL 244 (421)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHH
Q ss_pred HHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhh--hchhHHHHhhhh
Q 006744 542 NEMTQEGCPPNEV--ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK--KKTADLVLSGLK 614 (632)
Q Consensus 542 ~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~v~~~l~ 614 (632)
..+... +.|+.. +|..+...-.-.|+.+-|...-++.+... ...+....-..+|...-. ..+.+..++.|.
T Consensus 245 ~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~-~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~ 319 (421)
T PRK12798 245 VEILSF-MDPERQRELYLRIARAALIDGKTELARFASERALKLA-DPDSADAARARLYRGAALVASDDAESALEELS 319 (421)
T ss_pred HHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc-cCCCcchHHHHHHHHHHccCcccHHHHHHHHh
No 497
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.20 E-value=3.8e+02 Score=24.71 Aligned_cols=131 Identities=11% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 006744 364 KLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443 (632)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 443 (632)
..+.++.+.|-. |....+++.|...|.+....++....-|+.-+.++.+..+++.+..--.+..+ +
T Consensus 8 ~~a~qlkE~gnk------------~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l 73 (284)
T KOG4642|consen 8 ESAEQLKEQGNK------------CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--L 73 (284)
T ss_pred hHHHHHHhcccc------------ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--c
Q ss_pred CcCHHHHHHHHH-HHHHcCCHHHHHHHHHHH----HHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744 444 EVNSLSFSIAIQ-CHVESGDILEACECHNKI----IEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC 508 (632)
Q Consensus 444 ~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 508 (632)
.||.+--..++. +......+++|...+.+. .+..+.+-......|..+=-+.-.+.+..++.++.
T Consensus 74 ~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 74 DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
No 498
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.10 E-value=2.4e+02 Score=30.08 Aligned_cols=91 Identities=22% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHccCCHH------HHHHHHHHHHhCCCCCCHhcHHHH
Q 006744 278 VLIEGLVGEGKVGKACDLLKDLVDS--GYRADLGIYNSIIGGLCRVKQFD------KAYKLFEVTVQDDLAPDFSTVNPL 349 (632)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~p~~~~~~~l 349 (632)
+|+.+|...|++-.+.++++.+... |-+.=...||..|+...+.|.++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 006744 350 LVCCAEMGRMDNFFKLLAQMEK 371 (632)
Q Consensus 350 l~~~~~~~~~~~a~~~~~~~~~ 371 (632)
+.+....-+-....-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
No 499
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.97 E-value=2.1e+02 Score=22.37 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006744 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG-EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320 (632)
Q Consensus 242 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 320 (632)
..++..|...|+.++|...+.++... -.....++..+-.++-+ ...-+.+..++..+.+.+.......-..+-..+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~ 84 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLES 84 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q ss_pred cCC--------HHHHHHHHHHHHhCCCCC
Q 006744 321 VKQ--------FDKAYKLFEVTVQDDLAP 341 (632)
Q Consensus 321 ~g~--------~~~A~~~~~~m~~~~~~p 341 (632)
..+ ++-.-+++..+...|+-|
T Consensus 85 l~Dl~~D~P~~~~~la~~~~~~i~~~~lp 113 (113)
T PF02847_consen 85 LEDLELDIPKAPEYLAKFLARLIADGILP 113 (113)
T ss_dssp HHHHHHHSTTHHHHHHHHHHHHHHTTSS-
T ss_pred hhhccccchHHHHHHHHHHHHHHHcCCcC
No 500
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=33.65 E-value=1.3e+02 Score=29.64 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCceecccCCCCCCCCccccccccccccCCCCCCCCCCCCCCCcccccCCCCCCCCCCCC
Q 006744 1 MPPQTPQRPPKPYFFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQ 70 (632)
Q Consensus 1 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (632)
|.+|||++++.+.-.....+.++.+|.....+....-....|.+..+++.+.+...........+.....
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (353)
T PLN00034 3 PIQPPPGVPLPSTARHTTKSRPRRRPDLTLPLPQRDPSLAVPLPLPPPSSSSSSSSSSSASGSAPSAAKS 72 (353)
T ss_pred CCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCcccccCCCCCCCCCC
Done!