Query 006744
Match_columns 632
No_of_seqs 818 out of 3614
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 07:48:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.5E-38 5.3E-43 340.4 40.0 435 122-585 90-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.4E-36 1.2E-40 322.2 43.7 434 150-614 82-574 (597)
3 4g26_A Pentatricopeptide repea 100.0 3.8E-30 1.3E-34 263.4 24.2 203 137-356 11-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 9.8E-27 3.3E-31 234.5 47.9 374 181-565 12-385 (388)
5 4g26_A Pentatricopeptide repea 100.0 4.7E-30 1.6E-34 262.7 23.0 205 187-391 9-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 3.2E-26 1.1E-30 230.8 46.4 366 209-584 5-370 (388)
7 2gw1_A Mitochondrial precursor 99.9 2.1E-23 7.2E-28 218.6 37.6 400 177-585 15-481 (514)
8 2gw1_A Mitochondrial precursor 99.9 4E-22 1.4E-26 208.8 39.8 396 124-548 14-479 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 7.9E-22 2.7E-26 202.9 38.4 301 201-509 24-356 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 1.3E-21 4.3E-26 201.4 39.9 345 221-578 10-405 (450)
11 3fp2_A TPR repeat-containing p 99.9 1.1E-20 3.7E-25 199.1 39.6 397 177-585 34-494 (537)
12 3fp2_A TPR repeat-containing p 99.9 2.9E-19 9.8E-24 188.2 39.1 355 181-548 72-492 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 7.9E-19 2.7E-23 174.3 38.8 320 237-584 2-337 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 3E-18 1E-22 170.0 39.5 333 202-565 2-352 (359)
15 2xm6_A Protein corresponding t 99.8 8.6E-16 2.9E-20 159.3 51.6 354 202-585 38-435 (490)
16 2xm6_A Protein corresponding t 99.8 6.1E-16 2.1E-20 160.4 50.0 358 150-549 37-434 (490)
17 3hym_B Cell division cycle pro 99.8 8.1E-18 2.8E-22 164.9 32.6 292 236-569 20-321 (330)
18 3hym_B Cell division cycle pro 99.8 1.9E-17 6.5E-22 162.2 32.8 294 199-534 18-321 (330)
19 2ooe_A Cleavage stimulation fa 99.8 6E-16 2E-20 162.2 45.3 409 149-583 10-493 (530)
20 2ooe_A Cleavage stimulation fa 99.8 3.4E-16 1.2E-20 164.0 42.5 403 201-611 11-484 (530)
21 1fch_A Peroxisomal targeting s 99.8 9E-18 3.1E-22 167.4 25.8 273 212-509 34-312 (368)
22 1fch_A Peroxisomal targeting s 99.8 8E-18 2.7E-22 167.8 25.3 303 181-507 38-355 (368)
23 1b89_A Protein (clathrin heavy 99.8 1.4E-17 4.8E-22 162.2 22.2 289 120-468 7-303 (449)
24 4eqf_A PEX5-related protein; a 99.8 8.8E-18 3E-22 167.3 21.6 238 241-509 68-308 (365)
25 4eqf_A PEX5-related protein; a 99.8 9.1E-18 3.1E-22 167.2 20.9 267 202-507 64-352 (365)
26 1xi4_A Clathrin heavy chain; a 99.8 1.5E-14 5E-19 157.0 45.8 433 116-604 950-1415(1630)
27 3spa_A Mtrpol, DNA-directed RN 99.8 1.3E-18 4.4E-23 182.6 12.1 153 200-357 124-286 (1134)
28 1b89_A Protein (clathrin heavy 99.8 4.5E-17 1.5E-21 158.6 22.0 220 180-439 15-234 (449)
29 3cv0_A Peroxisome targeting si 99.8 1.8E-16 6.1E-21 155.0 25.3 277 241-544 24-312 (327)
30 3spa_A Mtrpol, DNA-directed RN 99.8 2.5E-18 8.6E-23 180.4 12.1 153 235-392 124-286 (1134)
31 4g1t_A Interferon-induced prot 99.7 1.9E-15 6.6E-20 156.1 33.1 368 201-585 49-462 (472)
32 3cv0_A Peroxisome targeting si 99.7 2.3E-16 7.7E-21 154.3 24.1 268 202-509 20-313 (327)
33 3mkr_A Coatomer subunit epsilo 99.7 1E-15 3.4E-20 146.3 26.7 223 243-476 39-264 (291)
34 4g1t_A Interferon-induced prot 99.7 6.1E-15 2.1E-19 152.3 34.6 374 149-548 48-460 (472)
35 1xi4_A Clathrin heavy chain; a 99.7 2.1E-13 7.3E-18 148.1 44.2 386 167-613 984-1378(1630)
36 3mkr_A Coatomer subunit epsilo 99.7 1.8E-15 6.1E-20 144.5 25.3 253 246-547 7-264 (291)
37 3uq3_A Heat shock protein STI1 99.6 7.2E-14 2.5E-18 131.2 24.9 224 239-510 6-235 (258)
38 3e4b_A ALGK; tetratricopeptide 99.6 1E-13 3.5E-18 141.4 27.1 346 210-584 10-389 (452)
39 3uq3_A Heat shock protein STI1 99.6 1.3E-13 4.6E-18 129.4 24.2 226 202-475 4-235 (258)
40 2pl2_A Hypothetical conserved 99.6 7E-14 2.4E-18 127.4 20.4 198 201-438 3-211 (217)
41 3e4b_A ALGK; tetratricopeptide 99.6 1.2E-13 4E-18 141.0 24.2 373 180-582 15-421 (452)
42 3u4t_A TPR repeat-containing p 99.6 3E-13 1E-17 128.2 25.1 248 275-561 5-263 (272)
43 2pl2_A Hypothetical conserved 99.6 1.3E-13 4.6E-18 125.5 21.7 198 377-580 4-212 (217)
44 2h6f_A Protein farnesyltransfe 99.6 5.8E-13 2E-17 131.5 26.0 217 203-425 97-322 (382)
45 3u4t_A TPR repeat-containing p 99.6 6.5E-13 2.2E-17 125.9 24.8 236 238-511 3-250 (272)
46 1ouv_A Conserved hypothetical 99.6 6.5E-12 2.2E-16 119.0 31.0 222 202-440 5-250 (273)
47 2ho1_A Type 4 fimbrial biogene 99.6 1.7E-12 5.7E-17 121.4 25.8 132 203-336 37-169 (252)
48 2h6f_A Protein farnesyltransfe 99.6 1.7E-12 5.8E-17 128.1 26.6 250 152-424 97-365 (382)
49 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.9E-13 1.3E-17 127.6 20.8 248 182-470 19-269 (275)
50 4e6h_A MRNA 3'-END-processing 99.5 1E-10 3.5E-15 123.2 40.7 417 165-585 63-573 (679)
51 2ho1_A Type 4 fimbrial biogene 99.5 2.3E-12 7.8E-17 120.5 25.4 201 238-441 37-238 (252)
52 1ouv_A Conserved hypothetical 99.5 1.2E-11 4E-16 117.3 30.6 223 237-511 5-251 (273)
53 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.5E-13 1.9E-17 126.5 21.4 247 215-505 17-269 (275)
54 2vq2_A PILW, putative fimbrial 99.5 3.5E-12 1.2E-16 116.8 26.0 168 202-372 7-176 (225)
55 2q7f_A YRRB protein; TPR, prot 99.5 5.4E-13 1.9E-17 124.0 19.8 201 201-440 21-221 (243)
56 2vq2_A PILW, putative fimbrial 99.5 4.5E-12 1.5E-16 116.0 25.6 202 237-475 7-210 (225)
57 4e6h_A MRNA 3'-END-processing 99.5 4.4E-10 1.5E-14 118.4 42.4 420 136-563 52-584 (679)
58 4a1s_A PINS, partner of inscut 99.5 5.3E-13 1.8E-17 135.0 18.5 282 272-583 47-373 (411)
59 3sf4_A G-protein-signaling mod 99.5 7.5E-13 2.6E-17 133.5 19.3 303 235-569 6-363 (406)
60 4a1s_A PINS, partner of inscut 99.5 8.6E-13 2.9E-17 133.4 19.7 280 237-547 47-372 (411)
61 2q7f_A YRRB protein; TPR, prot 99.5 1.3E-12 4.6E-17 121.3 19.6 212 237-488 22-233 (243)
62 3sf4_A G-protein-signaling mod 99.5 1.2E-12 4E-17 132.1 20.0 303 200-534 6-363 (406)
63 3ro2_A PINS homolog, G-protein 99.5 1.8E-12 6.2E-17 126.7 19.2 96 240-336 7-111 (338)
64 3ro2_A PINS homolog, G-protein 99.5 1.4E-12 4.9E-17 127.5 17.7 281 273-583 5-333 (338)
65 3ulq_A Response regulator aspa 99.4 1.1E-11 3.9E-16 123.8 22.7 239 314-582 109-368 (383)
66 2ond_A Cleavage stimulation fa 99.4 9.5E-11 3.2E-15 113.1 27.9 183 290-476 81-270 (308)
67 3ulq_A Response regulator aspa 99.4 3.2E-11 1.1E-15 120.6 24.3 234 244-510 109-367 (383)
68 2ond_A Cleavage stimulation fa 99.4 2.4E-10 8.2E-15 110.2 28.1 219 290-547 33-270 (308)
69 3vtx_A MAMA; tetratricopeptide 99.4 4.9E-11 1.7E-15 105.3 21.1 165 273-440 5-169 (184)
70 3nf1_A KLC 1, kinesin light ch 99.4 3.8E-12 1.3E-16 123.1 14.4 246 202-475 26-306 (311)
71 3vtx_A MAMA; tetratricopeptide 99.4 1.1E-10 3.9E-15 103.0 22.2 168 202-373 4-171 (184)
72 4abn_A Tetratricopeptide repea 99.4 1.9E-11 6.6E-16 125.3 19.6 184 183-371 83-286 (474)
73 4abn_A Tetratricopeptide repea 99.4 2.7E-11 9.1E-16 124.3 19.8 199 377-579 101-318 (474)
74 3nf1_A KLC 1, kinesin light ch 99.3 4.6E-11 1.6E-15 115.3 19.6 239 343-582 27-307 (311)
75 3q15_A PSP28, response regulat 99.3 2.3E-10 7.8E-15 114.0 24.8 315 236-581 8-364 (378)
76 1hz4_A MALT regulatory protein 99.3 1E-09 3.5E-14 109.1 28.5 276 276-582 17-322 (373)
77 3q15_A PSP28, response regulat 99.3 4.3E-10 1.5E-14 112.0 24.8 312 201-546 8-364 (378)
78 1hz4_A MALT regulatory protein 99.3 2.4E-09 8.3E-14 106.4 28.9 275 207-510 18-321 (373)
79 3edt_B KLC 2, kinesin light ch 99.3 8.9E-11 3E-15 111.5 16.0 165 163-336 12-197 (283)
80 3as5_A MAMA; tetratricopeptide 99.2 1.1E-09 3.7E-14 96.5 21.0 168 412-584 8-175 (186)
81 3as5_A MAMA; tetratricopeptide 99.2 8.1E-10 2.8E-14 97.3 19.9 166 203-372 8-173 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.2 5.9E-10 2E-14 118.9 20.9 166 202-371 8-173 (723)
83 3edt_B KLC 2, kinesin light ch 99.2 3E-10 1E-14 107.8 16.1 228 354-582 12-281 (283)
84 4i17_A Hypothetical protein; T 99.2 1.2E-09 4.1E-14 100.1 19.7 196 377-585 6-212 (228)
85 4gyw_A UDP-N-acetylglucosamine 99.2 1E-09 3.4E-14 117.2 20.1 166 237-440 8-173 (723)
86 4i17_A Hypothetical protein; T 99.1 2.1E-08 7.1E-13 91.8 25.2 202 201-414 5-216 (228)
87 3dra_A Protein farnesyltransfe 99.0 1.1E-07 3.8E-12 89.8 25.2 228 185-417 50-298 (306)
88 2fo7_A Synthetic consensus TPR 99.0 1.5E-08 5.1E-13 83.6 17.3 130 205-337 3-132 (136)
89 1qqe_A Vesicular transport pro 99.0 1.4E-08 4.9E-13 96.8 19.2 126 247-372 46-187 (292)
90 1qqe_A Vesicular transport pro 99.0 1.6E-08 5.6E-13 96.4 19.6 162 211-372 45-228 (292)
91 2uy1_A Cleavage stimulation fa 99.0 4E-07 1.4E-11 93.2 31.0 376 164-581 6-412 (493)
92 3mv2_B Coatomer subunit epsilo 99.0 1.3E-07 4.3E-12 88.4 24.4 83 427-513 193-284 (310)
93 3mv2_B Coatomer subunit epsilo 99.0 1.4E-07 4.9E-12 88.1 24.1 182 397-585 85-285 (310)
94 3qky_A Outer membrane assembly 99.0 5.5E-08 1.9E-12 91.0 21.8 174 411-585 14-227 (261)
95 3qky_A Outer membrane assembly 99.0 3.1E-08 1.1E-12 92.7 18.8 62 486-547 152-224 (261)
96 2fo7_A Synthetic consensus TPR 98.9 5.4E-08 1.9E-12 80.1 16.9 130 240-372 3-132 (136)
97 2uy1_A Cleavage stimulation fa 98.9 3.9E-06 1.3E-10 85.8 34.0 340 166-546 28-412 (493)
98 3dra_A Protein farnesyltransfe 98.9 1.5E-06 5.2E-11 82.0 28.1 223 220-475 50-286 (306)
99 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.9E-07 9.8E-12 83.9 22.3 185 382-586 8-217 (225)
100 2pzi_A Probable serine/threoni 98.9 5.7E-08 2E-12 104.2 19.5 174 389-568 402-583 (681)
101 2pzi_A Probable serine/threoni 98.9 2.4E-08 8.1E-13 107.2 15.8 169 249-422 402-578 (681)
102 3urz_A Uncharacterized protein 98.9 9.1E-08 3.1E-12 86.0 17.3 131 418-555 60-192 (208)
103 3rjv_A Putative SEL1 repeat pr 98.9 2.5E-07 8.4E-12 83.4 20.0 175 396-584 4-199 (212)
104 2ifu_A Gamma-SNAP; membrane fu 98.9 3E-08 1E-12 95.3 14.7 161 412-575 76-254 (307)
105 2ifu_A Gamma-SNAP; membrane fu 98.8 1E-07 3.4E-12 91.6 17.6 160 210-370 43-222 (307)
106 2r5s_A Uncharacterized protein 98.8 5.4E-08 1.8E-12 84.9 14.2 157 385-544 13-170 (176)
107 3urz_A Uncharacterized protein 98.8 8.1E-08 2.8E-12 86.3 15.5 107 211-321 12-135 (208)
108 3qou_A Protein YBBN; thioredox 98.8 1E-07 3.5E-12 90.4 17.0 162 380-544 119-281 (287)
109 2r5s_A Uncharacterized protein 98.8 6.3E-08 2.2E-12 84.4 13.4 161 206-370 9-171 (176)
110 2yhc_A BAMD, UPF0169 lipoprote 98.8 6.5E-07 2.2E-11 81.5 20.2 206 272-512 3-214 (225)
111 3qou_A Protein YBBN; thioredox 98.8 1.8E-07 6.3E-12 88.7 16.7 63 273-336 117-179 (287)
112 3rjv_A Putative SEL1 repeat pr 98.8 7.2E-07 2.5E-11 80.3 19.8 176 187-374 5-199 (212)
113 2vsy_A XCC0866; transferase, g 98.8 1.7E-07 5.7E-12 98.8 18.0 153 182-338 3-158 (568)
114 4ga2_A E3 SUMO-protein ligase 98.8 3.2E-08 1.1E-12 83.6 10.2 110 215-327 9-118 (150)
115 4ga2_A E3 SUMO-protein ligase 98.8 6.4E-08 2.2E-12 81.7 11.7 139 181-323 10-149 (150)
116 2vsy_A XCC0866; transferase, g 98.7 2.6E-07 8.8E-12 97.3 18.1 156 216-375 2-160 (568)
117 2qfc_A PLCR protein; TPR, HTH, 98.7 2E-06 6.9E-11 81.8 22.5 169 413-581 76-265 (293)
118 3q7a_A Farnesyltransferase alp 98.7 4.4E-06 1.5E-10 79.7 24.0 169 185-358 71-257 (349)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.1E-06 3.7E-11 79.1 18.0 129 205-338 8-151 (213)
120 3u3w_A Transcriptional activat 98.7 2.3E-06 7.7E-11 81.5 20.9 164 208-371 80-265 (293)
121 3q7a_A Farnesyltransferase alp 98.7 2.3E-05 8E-10 74.7 26.9 183 213-427 64-257 (349)
122 3u3w_A Transcriptional activat 98.6 5.7E-06 1.9E-10 78.7 22.8 163 419-581 82-265 (293)
123 2c2l_A CHIP, carboxy terminus 98.6 3.5E-07 1.2E-11 86.4 13.8 97 238-336 4-100 (281)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.6 4.2E-06 1.4E-10 75.2 20.3 130 414-548 8-151 (213)
125 4f3v_A ESX-1 secretion system 98.6 8.8E-07 3E-11 81.6 15.6 189 390-584 18-239 (282)
126 3gw4_A Uncharacterized protein 98.6 6.4E-07 2.2E-11 79.9 14.2 119 391-509 5-134 (203)
127 1a17_A Serine/threonine protei 98.6 1.8E-06 6E-11 74.0 16.0 130 203-335 13-144 (166)
128 1a17_A Serine/threonine protei 98.6 2.1E-06 7.2E-11 73.5 16.1 95 414-510 15-109 (166)
129 3gyz_A Chaperone protein IPGC; 98.6 6.9E-07 2.4E-11 75.0 12.3 98 203-302 36-133 (151)
130 4gco_A Protein STI-1; structur 98.6 1.9E-06 6.5E-11 70.0 14.6 99 204-304 14-112 (126)
131 1na0_A Designed protein CTPR3; 98.6 2.2E-06 7.6E-11 69.1 14.9 113 203-318 9-121 (125)
132 3dss_A Geranylgeranyl transfer 98.5 3.3E-05 1.1E-09 73.3 24.7 158 185-347 47-231 (331)
133 2lni_A Stress-induced-phosphop 98.5 2.4E-06 8.2E-11 69.9 14.2 118 201-321 14-131 (133)
134 2vgx_A Chaperone SYCD; alterna 98.5 8.5E-07 2.9E-11 74.5 11.4 114 402-517 11-124 (148)
135 3gw4_A Uncharacterized protein 98.5 1.6E-06 5.6E-11 77.2 14.0 154 181-335 5-174 (203)
136 2vyi_A SGTA protein; chaperone 98.5 2.9E-06 9.9E-11 69.1 14.3 119 202-323 11-129 (131)
137 3gyz_A Chaperone protein IPGC; 98.5 8.2E-07 2.8E-11 74.5 10.5 99 237-337 35-133 (151)
138 2qfc_A PLCR protein; TPR, HTH, 98.5 1.9E-05 6.5E-10 75.0 21.5 96 414-509 157-264 (293)
139 4gco_A Protein STI-1; structur 98.5 5.5E-06 1.9E-10 67.2 14.9 97 239-337 14-110 (126)
140 2e2e_A Formate-dependent nitri 98.5 1.5E-06 5.3E-11 75.5 12.3 127 389-517 21-150 (177)
141 1na0_A Designed protein CTPR3; 98.4 7.2E-06 2.4E-10 66.0 15.3 99 238-338 9-107 (125)
142 2c2l_A CHIP, carboxy terminus 98.4 3E-06 1E-10 80.0 14.7 100 272-373 3-102 (281)
143 4f3v_A ESX-1 secretion system 98.4 4.5E-06 1.5E-10 76.9 14.7 188 215-408 18-238 (282)
144 2e2e_A Formate-dependent nitri 98.4 2.5E-06 8.6E-11 74.1 12.7 120 215-337 22-144 (177)
145 2vyi_A SGTA protein; chaperone 98.4 7.7E-06 2.6E-10 66.5 14.7 120 237-359 11-130 (131)
146 2vgx_A Chaperone SYCD; alterna 98.4 1.7E-06 5.9E-11 72.5 10.4 95 240-336 23-117 (148)
147 2lni_A Stress-induced-phosphop 98.4 6.8E-06 2.3E-10 67.1 13.9 118 236-356 14-131 (133)
148 1p5q_A FKBP52, FK506-binding p 98.4 6E-06 2.1E-10 80.1 15.5 130 202-335 146-292 (336)
149 1p5q_A FKBP52, FK506-binding p 98.4 7.6E-06 2.6E-10 79.4 16.1 129 449-580 149-292 (336)
150 3dss_A Geranylgeranyl transfer 98.4 0.00033 1.1E-08 66.5 26.4 250 214-492 40-319 (331)
151 2xcb_A PCRH, regulatory protei 98.3 5.1E-06 1.8E-10 69.1 11.4 99 411-511 17-115 (142)
152 1elw_A TPR1-domain of HOP; HOP 98.3 2.4E-05 8.3E-10 62.0 15.1 99 203-303 4-102 (118)
153 3upv_A Heat shock protein STI1 98.3 1.3E-05 4.4E-10 64.9 13.5 97 204-302 5-101 (126)
154 2fbn_A 70 kDa peptidylprolyl i 98.3 2.2E-06 7.4E-11 76.2 9.1 131 450-583 41-187 (198)
155 3upv_A Heat shock protein STI1 98.2 1.9E-05 6.4E-10 64.0 12.7 98 238-337 4-101 (126)
156 4b4t_Q 26S proteasome regulato 98.2 5.5E-05 1.9E-09 76.4 19.0 167 415-581 58-244 (434)
157 3sz7_A HSC70 cochaperone (SGT) 98.2 2.2E-05 7.5E-10 67.1 13.7 105 411-517 10-114 (164)
158 2fbn_A 70 kDa peptidylprolyl i 98.2 1.9E-05 6.4E-10 70.0 13.6 124 203-328 38-176 (198)
159 2xcb_A PCRH, regulatory protei 98.2 1.4E-05 4.9E-10 66.3 12.1 98 203-302 18-115 (142)
160 4gcn_A Protein STI-1; structur 98.2 3.4E-05 1.2E-09 62.6 13.7 26 415-440 11-36 (127)
161 4b4t_Q 26S proteasome regulato 98.2 7.7E-05 2.6E-09 75.3 19.4 97 413-509 136-243 (434)
162 2dba_A Smooth muscle cell asso 98.2 6.2E-05 2.1E-09 62.7 15.7 100 201-303 26-129 (148)
163 1elw_A TPR1-domain of HOP; HOP 98.2 5.8E-05 2E-09 59.8 14.8 99 238-338 4-102 (118)
164 3sz7_A HSC70 cochaperone (SGT) 98.2 3.2E-05 1.1E-09 66.0 13.7 95 240-336 13-107 (164)
165 3ro3_A PINS homolog, G-protein 98.2 1.4E-05 4.9E-10 67.7 11.2 99 484-582 51-158 (164)
166 2kck_A TPR repeat; tetratricop 98.2 2.4E-05 8.3E-10 61.4 11.8 101 482-585 6-109 (112)
167 3q49_B STIP1 homology and U bo 98.1 4.7E-05 1.6E-09 62.5 13.9 96 238-335 9-104 (137)
168 4gcn_A Protein STI-1; structur 98.1 4.8E-05 1.6E-09 61.7 13.4 98 204-302 9-112 (127)
169 3q49_B STIP1 homology and U bo 98.1 5.5E-05 1.9E-09 62.1 13.8 100 201-302 7-106 (137)
170 2kck_A TPR repeat; tetratricop 98.1 3.7E-05 1.3E-09 60.3 12.0 100 411-511 5-106 (112)
171 1elr_A TPR2A-domain of HOP; HO 98.1 3E-05 1E-09 62.9 11.4 98 204-302 5-108 (131)
172 3ro3_A PINS homolog, G-protein 98.1 2.4E-05 8.4E-10 66.2 11.2 134 413-546 10-157 (164)
173 1hxi_A PEX5, peroxisome target 98.1 3.7E-05 1.3E-09 61.7 11.0 91 208-300 22-112 (121)
174 1hxi_A PEX5, peroxisome target 98.1 3.4E-05 1.2E-09 61.9 10.8 96 240-337 19-114 (121)
175 2dba_A Smooth muscle cell asso 98.1 9.1E-05 3.1E-09 61.6 13.9 99 481-583 27-129 (148)
176 1elr_A TPR2A-domain of HOP; HO 98.0 4.1E-05 1.4E-09 62.1 11.4 99 238-337 4-108 (131)
177 3k9i_A BH0479 protein; putativ 98.0 2.1E-05 7.2E-10 62.7 8.3 96 425-521 3-100 (117)
178 2xev_A YBGF; tetratricopeptide 97.9 0.00027 9.1E-09 57.1 14.5 93 208-302 7-105 (129)
179 1wao_1 Serine/threonine protei 97.9 2.7E-05 9.3E-10 79.4 9.5 122 208-332 11-134 (477)
180 1dce_A Protein (RAB geranylger 97.9 0.00033 1.1E-08 72.8 17.7 170 184-358 45-241 (567)
181 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00013 4.4E-09 74.1 14.1 123 202-328 267-405 (457)
182 2xev_A YBGF; tetratricopeptide 97.9 0.00064 2.2E-08 54.8 15.9 26 556-581 79-104 (129)
183 2hr2_A Hypothetical protein; a 97.9 0.00019 6.6E-09 59.4 12.5 95 487-582 16-131 (159)
184 1ihg_A Cyclophilin 40; ppiase 97.9 0.00012 4.1E-09 71.8 13.1 120 205-326 225-359 (370)
185 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00027 9.4E-09 71.6 15.5 153 426-582 248-415 (457)
186 1wao_1 Serine/threonine protei 97.8 5.6E-05 1.9E-09 77.0 10.3 118 387-506 15-134 (477)
187 1dce_A Protein (RAB geranylger 97.8 0.00082 2.8E-08 69.8 19.0 191 215-430 40-244 (567)
188 3k9i_A BH0479 protein; putativ 97.8 5E-05 1.7E-09 60.5 7.7 84 252-336 4-89 (117)
189 3rkv_A Putative peptidylprolyl 97.8 0.00014 4.6E-09 61.9 10.6 99 203-302 11-126 (162)
190 3n71_A Histone lysine methyltr 97.8 0.00016 5.5E-09 73.2 12.2 133 421-582 318-464 (490)
191 3rkv_A Putative peptidylprolyl 97.8 0.00032 1.1E-08 59.5 12.5 99 238-337 11-126 (162)
192 2if4_A ATFKBP42; FKBP-like, al 97.8 8.3E-05 2.8E-09 72.1 9.6 149 204-373 180-329 (338)
193 1ihg_A Cyclophilin 40; ppiase 97.7 0.0003 1E-08 68.9 13.3 98 239-337 224-336 (370)
194 2hr2_A Hypothetical protein; a 97.7 0.00057 1.9E-08 56.6 11.9 61 275-336 59-130 (159)
195 1klx_A Cysteine rich protein B 97.7 0.0017 5.8E-08 53.2 14.8 112 461-584 9-128 (138)
196 3n71_A Histone lysine methyltr 97.6 0.00033 1.1E-08 70.9 11.5 89 282-370 318-420 (490)
197 1klx_A Cysteine rich protein B 97.5 0.0029 9.8E-08 51.8 14.5 86 386-476 33-126 (138)
198 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00036 1.2E-08 67.5 10.0 151 239-410 180-331 (338)
199 2l6j_A TPR repeat-containing p 97.4 0.00013 4.3E-09 57.2 4.2 64 203-267 4-67 (111)
200 2kat_A Uncharacterized protein 97.4 0.0012 4.2E-08 51.9 10.0 77 257-335 4-80 (115)
201 2l6j_A TPR repeat-containing p 97.4 0.00025 8.7E-09 55.4 5.8 64 238-302 4-67 (111)
202 2kat_A Uncharacterized protein 97.4 0.0014 4.7E-08 51.6 10.1 78 397-475 4-81 (115)
203 1na3_A Designed protein CTPR2; 97.3 0.0019 6.7E-08 47.9 10.4 79 203-283 9-87 (91)
204 1na3_A Designed protein CTPR2; 97.3 0.0023 7.8E-08 47.5 10.5 78 239-318 10-87 (91)
205 1zu2_A Mitochondrial import re 97.2 0.001 3.5E-08 55.0 7.9 86 389-475 13-119 (158)
206 1zu2_A Mitochondrial import re 97.2 0.00072 2.5E-08 55.9 7.0 109 214-351 13-132 (158)
207 3mkq_A Coatomer beta'-subunit; 97.1 0.091 3.1E-06 57.5 25.2 129 347-507 633-761 (814)
208 1wy6_A Hypothetical protein ST 97.0 0.047 1.6E-06 42.7 14.6 135 285-443 19-156 (172)
209 3ma5_A Tetratricopeptide repea 97.0 0.0028 9.6E-08 48.4 8.2 61 448-509 8-68 (100)
210 3ma5_A Tetratricopeptide repea 97.0 0.0035 1.2E-07 47.8 8.7 62 482-545 7-68 (100)
211 3qww_A SET and MYND domain-con 96.8 0.0084 2.9E-07 59.6 11.6 50 460-509 311-367 (433)
212 3qwp_A SET and MYND domain-con 96.6 0.015 5.1E-07 57.9 12.2 54 456-509 296-356 (429)
213 3mkq_A Coatomer beta'-subunit; 96.6 0.13 4.4E-06 56.3 20.7 123 213-368 609-732 (814)
214 3ly7_A Transcriptional activat 96.6 0.092 3.1E-06 50.0 16.3 69 515-585 274-342 (372)
215 3ly7_A Transcriptional activat 96.5 0.067 2.3E-06 50.9 15.0 63 482-547 277-339 (372)
216 2kc7_A BFR218_protein; tetratr 96.5 0.015 5.2E-07 43.8 8.9 56 527-583 9-65 (99)
217 3bee_A Putative YFRE protein; 96.4 0.064 2.2E-06 39.9 11.5 68 517-585 5-75 (93)
218 3qwp_A SET and MYND domain-con 96.4 0.035 1.2E-06 55.1 13.0 91 419-509 294-398 (429)
219 3mkq_B Coatomer subunit alpha; 96.3 0.39 1.3E-05 40.2 17.7 100 388-507 15-114 (177)
220 4ady_A RPN2, 26S proteasome re 96.3 1.7 5.7E-05 47.0 25.5 151 353-509 500-656 (963)
221 3qww_A SET and MYND domain-con 96.2 0.016 5.4E-07 57.6 9.4 84 252-335 312-409 (433)
222 3mkq_B Coatomer subunit alpha; 96.0 0.24 8.2E-06 41.5 13.9 104 174-298 11-114 (177)
223 2kc7_A BFR218_protein; tetratr 95.9 0.086 2.9E-06 39.5 10.6 55 456-511 9-64 (99)
224 3lvg_A Clathrin heavy chain 1; 95.8 0.00018 6.3E-09 69.6 -6.3 204 202-425 53-276 (624)
225 3bee_A Putative YFRE protein; 95.4 0.28 9.5E-06 36.4 11.3 46 464-510 26-71 (93)
226 4b4t_P 26S proteasome regulato 95.3 1 3.5E-05 44.8 18.5 167 415-581 140-323 (445)
227 1pc2_A Mitochondria fission pr 95.2 0.12 4E-06 42.2 9.2 67 517-584 31-102 (152)
228 1wy6_A Hypothetical protein ST 95.2 0.86 2.9E-05 35.8 15.3 140 423-585 18-157 (172)
229 2v5f_A Prolyl 4-hydroxylase su 95.1 0.23 8E-06 37.7 10.4 61 241-301 8-74 (104)
230 2v5f_A Prolyl 4-hydroxylase su 95.0 0.26 8.8E-06 37.5 10.4 28 554-581 47-74 (104)
231 1pc2_A Mitochondria fission pr 94.9 0.3 1E-05 39.8 10.6 79 222-302 17-100 (152)
232 3lvg_A Clathrin heavy chain 1; 94.8 0.0048 1.6E-07 60.0 -0.2 398 121-575 88-534 (624)
233 3u64_A Protein TP_0956; tetrat 94.6 0.25 8.5E-06 45.1 10.4 85 393-479 178-272 (301)
234 3u64_A Protein TP_0956; tetrat 94.3 0.34 1.2E-05 44.2 10.8 54 532-585 218-272 (301)
235 1nzn_A CGI-135 protein, fissio 93.8 0.74 2.5E-05 36.0 10.4 86 497-585 16-106 (126)
236 4h7y_A Dual specificity protei 93.8 0.31 1E-05 39.2 8.2 54 532-586 74-127 (161)
237 4h7y_A Dual specificity protei 93.6 1.7 5.7E-05 35.0 12.0 104 201-306 11-127 (161)
238 4b4t_P 26S proteasome regulato 92.8 8.2 0.00028 38.2 20.3 51 216-266 29-84 (445)
239 1nzn_A CGI-135 protein, fissio 92.5 0.81 2.8E-05 35.8 8.8 23 524-546 80-102 (126)
240 3o48_A Mitochondria fission 1 91.7 1 3.5E-05 35.4 8.4 70 516-585 38-110 (134)
241 1y8m_A FIS1; mitochondria, unk 91.7 2.7 9.2E-05 33.5 10.9 71 515-585 36-109 (144)
242 3txn_A 26S proteasome regulato 91.5 10 0.00036 36.6 21.5 160 417-579 104-281 (394)
243 4gns_B Protein CSD3, chitin bi 91.3 2.8 9.5E-05 44.4 14.0 66 513-580 608-682 (754)
244 4fhn_B Nucleoporin NUP120; pro 91.0 4.4 0.00015 45.9 16.5 84 484-569 901-987 (1139)
245 1qsa_A Protein (soluble lytic 90.8 17 0.00057 37.7 25.6 115 427-546 229-347 (618)
246 4gns_B Protein CSD3, chitin bi 90.7 4 0.00014 43.2 14.5 51 528-579 347-397 (754)
247 2ff4_A Probable regulatory pro 90.6 4.9 0.00017 39.0 14.4 71 206-277 174-249 (388)
248 2wpv_A GET4, UPF0363 protein Y 90.4 11 0.00038 34.9 21.2 127 435-581 80-216 (312)
249 4ady_A RPN2, 26S proteasome re 88.7 30 0.001 37.6 37.1 260 282-546 383-657 (963)
250 4fhn_B Nucleoporin NUP120; pro 88.1 9.3 0.00032 43.3 16.1 157 126-290 822-988 (1139)
251 2ff4_A Probable regulatory pro 88.0 2 6.9E-05 41.8 9.4 72 240-312 173-249 (388)
252 2p58_C Putative type III secre 86.7 4.5 0.00015 29.7 7.9 47 181-233 53-99 (116)
253 3lpz_A GET4 (YOR164C homolog); 86.7 21 0.00071 33.4 25.5 83 479-581 133-215 (336)
254 4b4t_R RPN7, 26S proteasome re 85.5 29 0.001 34.1 17.4 101 414-514 133-240 (429)
255 2uwj_G Type III export protein 84.5 4.3 0.00015 29.7 6.9 32 200-233 67-98 (115)
256 3ffl_A Anaphase-promoting comp 84.4 11 0.00037 31.0 10.3 118 450-580 23-149 (167)
257 3ffl_A Anaphase-promoting comp 83.4 6.3 0.00022 32.4 8.5 62 414-475 22-91 (167)
258 1zbp_A Hypothetical protein VP 83.1 3.2 0.00011 37.2 7.3 55 491-547 6-60 (273)
259 1v54_E Cytochrome C oxidase po 82.4 13 0.00044 27.5 8.8 47 221-267 28-74 (109)
260 3lpz_A GET4 (YOR164C homolog); 81.6 34 0.0012 31.9 23.0 47 307-357 135-181 (336)
261 1v54_E Cytochrome C oxidase po 78.7 18 0.0006 26.8 9.0 48 465-512 28-75 (109)
262 2zu6_B Programmed cell death p 78.0 13 0.00043 34.5 9.8 64 415-479 169-234 (307)
263 3o48_A Mitochondria fission 1 77.7 20 0.00069 28.1 9.2 17 353-369 88-104 (134)
264 3eiq_C Programmed cell death p 77.6 15 0.0005 34.9 10.3 65 415-480 220-286 (358)
265 4b4t_R RPN7, 26S proteasome re 76.1 25 0.00086 34.5 12.1 99 449-547 133-237 (429)
266 2y69_E Cytochrome C oxidase su 75.8 23 0.00078 27.8 8.8 59 221-280 71-129 (152)
267 2wpv_A GET4, UPF0363 protein Y 74.8 53 0.0018 30.4 22.7 26 307-332 133-158 (312)
268 3txn_A 26S proteasome regulato 74.2 65 0.0022 31.0 21.8 165 273-438 19-207 (394)
269 3eiq_C Programmed cell death p 73.6 62 0.0021 30.6 13.7 65 382-446 221-287 (358)
270 2y69_E Cytochrome C oxidase su 73.0 32 0.0011 27.0 9.0 49 465-513 71-119 (152)
271 3eu9_A Huntingtin-interacting 72.3 8 0.00027 34.0 7.0 14 209-222 45-58 (240)
272 2uwj_G Type III export protein 70.2 30 0.001 25.4 8.6 13 493-505 50-62 (115)
273 2p58_C Putative type III secre 69.5 31 0.0011 25.4 9.3 13 493-505 51-63 (116)
274 1k1a_A B-cell lymphoma 3-encod 67.4 32 0.0011 30.0 9.9 85 210-298 13-101 (241)
275 3esl_A Checkpoint serine/threo 63.6 65 0.0022 27.4 10.0 53 254-306 95-148 (202)
276 1y8m_A FIS1; mitochondria, unk 62.4 57 0.002 25.9 13.0 67 445-511 37-106 (144)
277 1wdy_A 2-5A-dependent ribonucl 61.8 71 0.0024 28.5 11.5 49 458-506 190-240 (285)
278 3esl_A Checkpoint serine/threo 61.2 39 0.0013 28.8 8.2 52 394-445 95-148 (202)
279 3kea_A K1L; tropism, ANK repea 60.5 39 0.0014 30.7 9.3 10 437-446 213-222 (285)
280 1wdy_A 2-5A-dependent ribonucl 59.2 29 0.00099 31.2 8.2 48 423-470 190-239 (285)
281 2nsz_A Programmed cell death p 57.2 62 0.0021 25.3 8.4 63 277-340 11-75 (129)
282 3jxi_A Vanilloid receptor-rela 56.2 15 0.00051 32.9 5.5 55 210-264 9-72 (260)
283 1n11_A Ankyrin; clathrin, BAND 55.9 71 0.0024 31.1 10.9 80 209-297 50-134 (437)
284 1qsa_A Protein (soluble lytic 54.8 2E+02 0.0067 29.7 32.1 50 525-577 388-437 (618)
285 4a1g_A Mitotic checkpoint seri 54.1 77 0.0026 25.6 8.5 49 397-445 84-134 (152)
286 3bu8_A Telomeric repeat-bindin 53.1 62 0.0021 27.7 7.9 23 560-582 121-143 (235)
287 1zbp_A Hypothetical protein VP 51.5 1.4E+02 0.0046 26.9 15.1 53 388-440 7-59 (273)
288 3hra_A Ankyrin repeat family p 51.3 36 0.0012 28.6 7.0 7 286-292 15-21 (201)
289 1k1a_A B-cell lymphoma 3-encod 50.0 85 0.0029 27.1 9.5 21 283-303 16-36 (241)
290 2ion_A PDCD4, programmed cell 49.2 55 0.0019 26.5 7.1 24 277-300 13-36 (152)
291 2wvi_A Mitotic checkpoint seri 46.5 1.1E+02 0.0037 25.1 8.4 50 431-480 79-129 (164)
292 3t8k_A Uncharacterized protein 46.4 1E+02 0.0035 25.7 8.9 64 244-307 41-108 (186)
293 3jxi_A Vanilloid receptor-rela 46.4 20 0.00067 32.1 4.6 26 247-272 11-36 (260)
294 2zu6_B Programmed cell death p 45.9 1.8E+02 0.0062 26.7 11.8 62 383-444 171-234 (307)
295 3ljn_A Hypothetical protein; a 45.9 43 0.0015 31.7 7.3 24 281-304 89-112 (364)
296 2d2s_A Exocyst complex compone 45.1 1.6E+02 0.0054 25.8 10.0 45 218-265 74-118 (235)
297 3c1d_A Protein ORAA, regulator 44.4 1.3E+02 0.0043 24.5 9.9 112 255-371 47-159 (159)
298 3eu9_A Huntingtin-interacting 44.4 87 0.003 26.9 8.7 9 281-289 47-55 (240)
299 2ion_A PDCD4, programmed cell 41.9 84 0.0029 25.3 7.1 12 431-442 64-75 (152)
300 3kea_A K1L; tropism, ANK repea 41.6 64 0.0022 29.2 7.4 112 209-333 65-183 (285)
301 1ug3_A EIF4GI, eukaryotic prot 41.6 50 0.0017 31.1 6.7 25 415-439 14-38 (339)
302 3ljn_A Hypothetical protein; a 41.1 62 0.0021 30.6 7.5 15 458-472 252-266 (364)
303 2d2s_A Exocyst complex compone 40.7 1.3E+02 0.0044 26.4 8.7 21 454-474 25-45 (235)
304 3hra_A Ankyrin repeat family p 40.5 78 0.0027 26.4 7.4 16 317-332 11-26 (201)
305 1n11_A Ankyrin; clathrin, BAND 39.5 1.5E+02 0.005 28.7 10.2 334 209-586 17-370 (437)
306 1bpo_A Protein (clathrin); cla 38.9 2.8E+02 0.0097 27.2 11.1 117 120-258 333-449 (494)
307 2nsz_A Programmed cell death p 37.9 1.4E+02 0.0048 23.2 10.6 23 486-508 11-33 (129)
308 3ltm_A Alpha-REP4; protein eng 35.2 2E+02 0.0069 24.1 19.0 122 201-335 62-183 (211)
309 2xig_A Ferric uptake regulatio 34.9 1.2E+02 0.0039 24.4 7.0 61 298-359 17-77 (150)
310 4g8k_A 2-5A-dependent ribonucl 34.7 2.5E+02 0.0087 25.7 10.7 104 467-586 219-327 (337)
311 3lxu_X Tripeptidyl-peptidase 2 34.2 1.8E+02 0.0061 33.1 10.2 188 377-580 1107-1343(1354)
312 4aez_C MAD3, mitotic spindle c 33.9 86 0.0029 27.2 6.2 32 414-445 152-183 (223)
313 2chq_A Replication factor C sm 33.8 2.7E+02 0.0093 25.2 13.8 18 217-234 241-259 (319)
314 3aji_A 26S proteasome non-ATPa 33.3 1.1E+02 0.0037 26.2 7.4 19 210-228 10-28 (231)
315 3t8k_A Uncharacterized protein 33.0 1.6E+02 0.0056 24.4 8.1 100 208-307 40-148 (186)
316 2xig_A Ferric uptake regulatio 32.5 1.9E+02 0.0065 23.1 8.0 59 404-462 18-76 (150)
317 2rfa_A Transient receptor pote 32.1 1.7E+02 0.0058 25.0 8.4 26 349-374 157-182 (232)
318 2etb_A Transient receptor pote 31.9 1.8E+02 0.0062 25.4 8.7 24 211-234 7-30 (256)
319 2fe3_A Peroxide operon regulat 31.9 1.2E+02 0.004 24.2 6.5 61 298-359 12-72 (145)
320 2rfa_A Transient receptor pote 31.5 1.5E+02 0.005 25.4 7.9 151 209-369 40-220 (232)
321 4aez_C MAD3, mitotic spindle c 31.3 2.6E+02 0.0088 24.2 10.3 52 535-586 131-183 (223)
322 2etb_A Transient receptor pote 31.0 78 0.0027 27.9 6.1 15 422-436 228-242 (256)
323 3i5p_A Nucleoporin NUP170; hel 30.1 1.8E+02 0.0063 29.1 8.8 21 527-547 226-246 (525)
324 3us6_A Histidine-containing ph 29.7 2.2E+02 0.0075 22.9 10.5 20 281-300 101-120 (153)
325 4fke_A Aminopeptidase N; zinc 29.5 5.8E+02 0.02 27.8 17.5 90 349-440 692-786 (909)
326 3aji_A 26S proteasome non-ATPa 29.5 1.6E+02 0.0053 25.2 7.7 13 249-261 14-26 (231)
327 1oai_A Nuclear RNA export fact 28.9 96 0.0033 20.2 4.4 40 113-152 16-56 (59)
328 2fe3_A Peroxide operon regulat 28.7 2.2E+02 0.0074 22.5 8.2 59 404-462 13-71 (145)
329 1mzb_A Ferric uptake regulatio 28.3 1.9E+02 0.0066 22.5 7.2 57 406-462 11-68 (136)
330 3ltj_A Alpharep-4; protein eng 28.1 2.6E+02 0.0088 23.2 17.6 80 236-323 88-167 (201)
331 1mzb_A Ferric uptake regulatio 28.1 1.3E+02 0.0045 23.5 6.1 60 299-359 9-69 (136)
332 2ijq_A Hypothetical protein; s 28.0 2.4E+02 0.0083 22.9 8.2 16 215-230 87-102 (161)
333 3mv2_A Coatomer subunit alpha; 27.9 3.6E+02 0.012 24.9 11.4 48 464-511 187-236 (325)
334 4b4t_S RPN3, 26S proteasome re 27.8 4.7E+02 0.016 26.1 11.5 65 308-372 231-299 (523)
335 3eyy_A Putative iron uptake re 27.8 1.7E+02 0.0059 23.2 6.8 56 406-462 12-67 (145)
336 3b7b_A Euchromatic histone-lys 27.6 1.4E+02 0.0046 25.7 7.0 13 210-222 48-60 (237)
337 2pnn_A Transient receptor pote 27.0 92 0.0031 27.8 5.8 55 210-264 17-80 (273)
338 2pnn_A Transient receptor pote 27.0 77 0.0026 28.3 5.3 23 247-269 19-41 (273)
339 2qx5_A Nucleoporin NIC96; mRNA 27.0 5.5E+02 0.019 26.6 17.8 20 244-263 158-177 (661)
340 4g8k_A 2-5A-dependent ribonucl 25.8 3.8E+02 0.013 24.4 14.3 20 208-227 27-46 (337)
341 3f3f_C Nucleoporin NUP85; stru 25.6 5.3E+02 0.018 26.0 16.6 293 135-433 205-570 (570)
342 2w57_A Ferric uptake regulatio 25.6 1.4E+02 0.0047 24.0 5.9 61 298-359 7-68 (150)
343 2f6m_A Suppressor protein STP2 25.2 79 0.0027 21.1 3.4 44 206-250 5-48 (65)
344 3ltm_A Alpha-REP4; protein eng 25.0 3E+02 0.01 23.0 18.7 18 480-497 124-141 (211)
345 3eyy_A Putative iron uptake re 24.9 1.1E+02 0.0039 24.3 5.2 59 298-358 9-67 (145)
346 3bqo_A Telomeric repeat-bindin 24.8 1.5E+02 0.0052 25.0 5.8 24 559-582 123-146 (211)
347 4a1g_A Mitotic checkpoint seri 24.6 2.7E+02 0.0094 22.3 11.5 52 535-586 82-134 (152)
348 2r9g_A AAA ATPase, central reg 24.0 3.3E+02 0.011 23.1 10.1 92 244-336 17-116 (204)
349 2w57_A Ferric uptake regulatio 23.8 2.2E+02 0.0074 22.7 6.8 48 415-462 19-67 (150)
350 3e3v_A Regulatory protein RECX 23.6 3.1E+02 0.011 22.6 10.8 47 431-478 52-98 (177)
351 3d5l_A Regulatory protein RECX 23.4 3.6E+02 0.012 23.2 11.1 161 198-369 43-206 (221)
352 3pvs_A Replication-associated 23.0 5.3E+02 0.018 25.1 14.4 151 288-440 166-358 (447)
353 2yru_A Steroid receptor RNA ac 22.9 1.3E+02 0.0043 23.1 4.7 41 225-265 48-88 (118)
354 4ets_A Ferric uptake regulatio 22.7 1.6E+02 0.0056 23.9 5.9 60 299-359 24-85 (162)
355 1bpo_A Protein (clathrin); cla 22.7 5.5E+02 0.019 25.2 11.7 16 388-403 371-386 (494)
356 2ijq_A Hypothetical protein; s 22.6 3.1E+02 0.011 22.3 8.8 60 415-475 36-103 (161)
357 3ltj_A Alpharep-4; protein eng 22.0 3.4E+02 0.011 22.4 19.4 18 445-462 88-105 (201)
358 3utm_A Tankyrase-1; tankyrase, 21.2 4.7E+02 0.016 23.8 10.4 248 242-506 25-301 (351)
359 3kae_A CDC27, possible protein 20.8 3.6E+02 0.012 22.3 12.5 59 206-270 35-94 (242)
360 4fke_A Aminopeptidase N; zinc 20.6 8.4E+02 0.029 26.5 18.7 159 207-371 690-859 (909)
361 1wgl_A TOLL-interacting protei 20.4 1.3E+02 0.0045 19.6 3.8 22 320-341 35-56 (59)
362 3b7b_A Euchromatic histone-lys 20.3 1.6E+02 0.0053 25.3 5.8 75 210-293 15-94 (237)
363 4ets_A Ferric uptake regulatio 20.3 2.5E+02 0.0087 22.7 6.6 57 406-462 26-84 (162)
364 4gq2_M Nucleoporin NUP120; bet 20.1 5.7E+02 0.019 28.0 11.2 52 122-179 816-867 (950)
365 4gq2_M Nucleoporin NUP120; bet 20.1 8.8E+02 0.03 26.5 14.9 49 554-602 898-948 (950)
366 2xk0_A Polycomb protein PCL; t 20.0 52 0.0018 22.0 1.7 6 1-6 3-8 (69)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-38 Score=340.43 Aligned_cols=435 Identities=12% Similarity=-0.025 Sum_probs=371.5
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 006744 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201 (632)
Q Consensus 122 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 201 (632)
+...+...++++.|+.+|+.+.. ..|+..++..++.+|.+.|++++|..+|+.+.. ..+
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------~~~ 148 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL------------------YNR 148 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG------------------GGT
T ss_pred HHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc------------------ccc
Confidence 34455667899999999998874 357888999999999999888777777665532 246
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC---------------CCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKD---------------LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 266 (632)
+..+++.++.+|.+.|++++|+++|+++... +...+..+|+.++.+|.+.|++++|.++|++|.+
T Consensus 149 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 149 SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8889999999999999999999999853221 2234578999999999999999999999999988
Q ss_pred cCCcccHHh--------------------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006744 267 NGILIDRAI--------------------------------------YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL 308 (632)
Q Consensus 267 ~~~~p~~~~--------------------------------------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 308 (632)
.+.. +... |+.++..|.+.|++++|.++|+++.+. .++.
T Consensus 229 ~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 305 (597)
T 2xpi_A 229 VDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSS 305 (597)
T ss_dssp HCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCH
T ss_pred hCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchH
Confidence 6543 3333 333356677889999999999999876 4689
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHh
Q 006744 309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388 (632)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (632)
.+|+.++.+|.+.|++++|+++|+++.+.+.. +..++..++.++.+.|++++|.++++++.+... .+...+..++.+|
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHH
Confidence 99999999999999999999999999976533 778899999999999999999999999986543 3567788889999
Q ss_pred hhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 006744 389 GKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE 468 (632)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 468 (632)
.+.|++++|.++|+++.+..+.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.+
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999998777789999999999999999999999999998864 5578899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006744 469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV---ASGPT--EFKYALTILHVCRSGEAEKIIEVLNE 543 (632)
Q Consensus 469 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~ 543 (632)
+|+++.+.. ..+..+|+.++.+|.+.|++++|+++|+++++.. +..|+ ..+|..++.+|.+.|++++|++++++
T Consensus 463 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 463 YLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999865 3478899999999999999999999999987642 44677 78999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744 544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 544 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 585 (632)
+.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.+..
T Consensus 542 ~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 542 GLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 99875 668999999999999999999999999999998653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-36 Score=322.23 Aligned_cols=434 Identities=8% Similarity=-0.023 Sum_probs=375.2
Q ss_pred CCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 006744 150 HNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229 (632)
Q Consensus 150 ~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 229 (632)
++...|+.++..|.+.|++++|..+|+.+.. ..|+..++..++.+|.+.|++++|..+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~------------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 143 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD------------------ITGNPNDAFWLAQVYCCTGDYARAKCLLTKE 143 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh------------------hCCCchHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 5788999999999999888777777665543 2378899999999999999999999999998
Q ss_pred HhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc---------------CCcccHHhHHHHHHHHHhcCCHHHHHH
Q 006744 230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN---------------GILIDRAIYGVLIEGLVGEGKVGKACD 294 (632)
Q Consensus 230 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~a~~ 294 (632)
... .++..+++.++.+|.+.|++++|.++|+++... +...+..+|+.++.+|.+.|++++|.+
T Consensus 144 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 221 (597)
T 2xpi_A 144 DLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE 221 (597)
T ss_dssp CGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHH
Confidence 654 678999999999999999999999999953222 234468899999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHH--------------------------------------HHHHHHccCCHHHHHHHHHHHHh
Q 006744 295 LLKDLVDSGYRADLGIYNS--------------------------------------IIGGLCRVKQFDKAYKLFEVTVQ 336 (632)
Q Consensus 295 ~~~~m~~~g~~~~~~~~~~--------------------------------------li~~~~~~g~~~~A~~~~~~m~~ 336 (632)
+|++|.+.++. +...+.. ++..|.+.|++++|.++|+++.+
T Consensus 222 ~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 222 CYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence 99999987543 3333333 35566788999999999999886
Q ss_pred CCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHH
Q 006744 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN 416 (632)
Q Consensus 337 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 416 (632)
. .++..++..++.+|.+.|++++|.++|+++.+.+.. +...+..++.+|.+.|++++|.++|+++.+..+.+..+|+
T Consensus 301 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 377 (597)
T 2xpi_A 301 L--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWL 377 (597)
T ss_dssp G--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred C--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHH
Confidence 5 578999999999999999999999999999987654 6778888999999999999999999999988777899999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 006744 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496 (632)
Q Consensus 417 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 496 (632)
.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ ..+..+|+.++.+|.+.|
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcC
Confidence 99999999999999999999998753 4467899999999999999999999999999865 347889999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHH
Q 006744 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE----GCPPN--EVICSAIISGMCKHGTLE 570 (632)
Q Consensus 497 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~ 570 (632)
++++|.++|+++++..+ .+..+|+.++..|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|+++
T Consensus 456 ~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 456 NILLANEYLQSSYALFQ--YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp CHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 99999999999987643 36778999999999999999999999999876 66777 789999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhhchhHHHHhhhh
Q 006744 571 EARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK 614 (632)
Q Consensus 571 ~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~l~ 614 (632)
+|.++|+++.+.+.. +...|..+...+.+.++.+.+.+.++
T Consensus 534 ~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 534 AAIDALNQGLLLSTN---DANVHTAIALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHHHHHHHSSC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999988732 45677777777887777777776665
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.8e-30 Score=263.43 Aligned_cols=203 Identities=17% Similarity=0.159 Sum_probs=166.0
Q ss_pred HHHHHhhhcCCCCCCH-HHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh
Q 006744 137 KFFHWAGKQKGYKHNF-ASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA 215 (632)
Q Consensus 137 ~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 215 (632)
.+++.+ ++.+....+ ..++.+|++|++.|+++ +|+++|++|.+.|+.||..+||+||.+|++
T Consensus 11 ~L~~~~-~~k~~~~spe~~l~~~id~c~k~G~~~----------------~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~ 73 (501)
T 4g26_A 11 NLSRKA-KKKAIQQSPEALLKQKLDMCSKKGDVL----------------EALRLYDEARRNGVQLSQYHYNVLLYVCSL 73 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHH----------------HHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHH-HHhcccCCCHHHHHHHHHHHHhCCCHH----------------HHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Confidence 333433 334444433 45788889998886554 455556666777789999999999999987
Q ss_pred cCC---------hhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhc
Q 006744 216 ERN---------LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286 (632)
Q Consensus 216 ~g~---------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 286 (632)
.+. +++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.
T Consensus 74 ~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~ 153 (501)
T 4g26_A 74 AEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 153 (501)
T ss_dssp CCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC
Confidence 654 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhc
Q 006744 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356 (632)
Q Consensus 287 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 356 (632)
|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 154 g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 154 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999998888754
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=9.8e-27 Score=234.52 Aligned_cols=374 Identities=13% Similarity=0.038 Sum_probs=219.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHH
Q 006744 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260 (632)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 260 (632)
.|++++|+..++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++++|.+.
T Consensus 12 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 456666666666655542 2245566666677777888888888877776653 45667777888888888888888888
Q ss_pred HHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006744 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA 340 (632)
Q Consensus 261 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 340 (632)
|+++.+.... +..+|..+..++.+.|++++|.+.|+++.+..+. +...+..+...+...|++++|.++|+++.+...
T Consensus 90 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p- 166 (388)
T 1w3b_A 90 YRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP- 166 (388)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-
Confidence 8887775432 4556777778888888888888888777776433 445666677777777888888888877776532
Q ss_pred CCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006744 341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG 420 (632)
Q Consensus 341 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 420 (632)
-+..+|..+...+...|++++|...++++.+.+.. ....+..+..++...|++++|...|++..+..+.+..+|..+..
T Consensus 167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 245 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH
Confidence 24556666777777777777777777776665432 23334444444555555555555555555544444555555555
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 006744 421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500 (632)
Q Consensus 421 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 500 (632)
+|...|++++|...|+++.+.+ +.+..++..+..++.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555555432 2233445555555555555555555555555432 2234445555555555555555
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006744 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565 (632)
Q Consensus 501 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 565 (632)
|++.++++++.. ..+...+..+...+.+.|++++|++.++++.+.. +.+...|..+...+..
T Consensus 324 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 324 AVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHH
Confidence 555555544321 1223344445555555555555555555554432 2334444444444433
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.7e-30 Score=262.73 Aligned_cols=205 Identities=18% Similarity=0.286 Sum_probs=181.4
Q ss_pred HHHHHHHHHhCCCCcC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC---------hhH
Q 006744 187 MLEILEKMRRNLCKPD-VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR---------VVR 256 (632)
Q Consensus 187 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~~~ 256 (632)
+..+.+++.+.+.... ...++.+|.+|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 4445566666665544 346889999999999999999999999999999999999999999997765 688
Q ss_pred HHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006744 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336 (632)
Q Consensus 257 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (632)
|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhc
Q 006744 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE 391 (632)
Q Consensus 337 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 391 (632)
.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..++..++..++..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999998888887653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.2e-26 Score=230.79 Aligned_cols=366 Identities=13% Similarity=0.061 Sum_probs=318.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC
Q 006744 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK 288 (632)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 288 (632)
+...+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...++...+... .+..+|..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence 3556788999999999999988764 34566777888888999999999999999988754 378899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHH
Q 006744 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368 (632)
Q Consensus 289 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 368 (632)
+++|.+.|+++.+..+. +..+|..+..++.+.|++++|.+.|+++.+.+.. +...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999987543 5678999999999999999999999999876422 344566777888899999999999999
Q ss_pred HHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH
Q 006744 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448 (632)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 448 (632)
+.+.... +...+..+..++...|++++|...|+++.+.++.+...|..+...+...|++++|...|++..... +-+..
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 9887543 456777888889999999999999999999888889999999999999999999999999998753 34577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 006744 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV 528 (632)
Q Consensus 449 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 528 (632)
++..+..++...|++++|.+.|+++.+... .+..+|..+..++.+.|++++|++.|+++++.. ..+...|..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHH
Confidence 889999999999999999999999998642 357789999999999999999999999998763 34667888899999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 529 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
...|++++|++.++++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+...
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999873 66788999999999999999999999999998643
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.1e-23 Score=218.56 Aligned_cols=400 Identities=9% Similarity=-0.022 Sum_probs=320.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhH
Q 006744 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256 (632)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 256 (632)
.....|++++|+..|+++.+.+ |+..+|..+..++.+.|++++|++.|+++.+.+ +.+..+|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHH
Confidence 4457899999999999999865 689999999999999999999999999998875 4567889999999999999999
Q ss_pred HHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----------------------------------
Q 006744 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS---------------------------------- 302 (632)
Q Consensus 257 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------------------- 302 (632)
|...|+++.+.+.. +......++..+........+.+.+..+...
T Consensus 92 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 92 AMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 99999999887643 4444444444444333333322222111100
Q ss_pred -CC---------CCCHhhHHHHHHHHHc---cCCHHHHHHHHHHHHh-----CCCCC--------CHhcHHHHHHHHHhc
Q 006744 303 -GY---------RADLGIYNSIIGGLCR---VKQFDKAYKLFEVTVQ-----DDLAP--------DFSTVNPLLVCCAEM 356 (632)
Q Consensus 303 -g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~p--------~~~~~~~ll~~~~~~ 356 (632)
.. ..+...+..+...+.. .|++++|..+|+++.+ ....| +..++..+...+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 00 0113344444444444 8999999999999987 32122 245677788899999
Q ss_pred CChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHH
Q 006744 357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFG 436 (632)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 436 (632)
|++++|...++++.+.... ...+..+..+|...|++++|...++++.+..+.+..+|..+...|...|++++|...|+
T Consensus 251 ~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp SCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999887755 77778888889999999999999999999888888899999999999999999999999
Q ss_pred HHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 006744 437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP 516 (632)
Q Consensus 437 ~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p 516 (632)
++.+.. +.+...+..+...+...|++++|..+++++.+.. ..+..++..+...|...|++++|...+++++...+..+
T Consensus 329 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 329 KAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 998864 3466788889999999999999999999998864 23567888999999999999999999999886544334
Q ss_pred h----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744 517 T----EFKYALTILHVCR---SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 517 ~----~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 585 (632)
+ ...|..+...+.. .|++++|++.++++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+.+..
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 3 4477789999999 999999999999999874 567889999999999999999999999999998653
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4e-22 Score=208.81 Aligned_cols=396 Identities=9% Similarity=-0.037 Sum_probs=296.3
Q ss_pred HHHhcCCChhHHHHHHHHhhhcCCCCCCHH--HHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 006744 124 EVLKVENNPTLASKFFHWAGKQKGYKHNFA--SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP 201 (632)
Q Consensus 124 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 201 (632)
..+-..|+++.|+..|+.+... +.. +|..+..++.+. |++++|+..|+++.+.+ +.
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~la~~~~~~----------------g~~~~A~~~~~~al~~~-p~ 71 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALEL-----KEDPVFYSNLSACYVSV----------------GDLKKVVEMSTKALELK-PD 71 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHC-SC
T ss_pred HHHHHhccHHHHHHHHHHHHhc-----CccHHHHHhHHHHHHHH----------------hhHHHHHHHHHHHhccC-hH
Confidence 3444566777777777766542 232 233333444444 56666666666666553 34
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc--------------
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN-------------- 267 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------- 267 (632)
+..+|..+..+|.+.|++++|...|+++.+.+ +++......++..+........+.+.+..+...
T Consensus 72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 150 (514)
T 2gw1_A 72 YSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE 150 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH
Confidence 67899999999999999999999999999876 344455555555444433222222222111100
Q ss_pred ---------------------CC---------cccHHhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC-----
Q 006744 268 ---------------------GI---------LIDRAIYGVLIEGLVG---EGKVGKACDLLKDLVD-----SGY----- 304 (632)
Q Consensus 268 ---------------------~~---------~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~----- 304 (632)
.. ..+...+..+...+.. .|++++|..+|+++.+ ..-
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 230 (514)
T 2gw1_A 151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE 230 (514)
T ss_dssp ------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred HHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccc
Confidence 00 1124444555555554 8999999999999987 311
Q ss_pred ---CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHH
Q 006744 305 ---RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381 (632)
Q Consensus 305 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 381 (632)
..+..+|..+...+...|++++|..+|+++.+.+.. ...+..+..++...|++++|...++++.+.... +...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 307 (514)
T 2gw1_A 231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVY 307 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHH
T ss_pred ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHH
Confidence 123567888899999999999999999999876544 778888999999999999999999999887543 45677
Q ss_pred HHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC
Q 006744 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461 (632)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 461 (632)
..+..+|...|++++|...|+++.+..+.+..++..+...|...|++++|..+++++.+.. +.+...+..+...+...|
T Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 308 YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKN 386 (514)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCC
Confidence 7888889999999999999999999887788899999999999999999999999998753 345678888999999999
Q ss_pred CHHHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCC
Q 006744 462 DILEACECHNKIIEMSQV-PS----VAAYNCLTKGLCK---IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE 533 (632)
Q Consensus 462 ~~~~a~~~~~~~~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 533 (632)
++++|...++++.+.... ++ ...+..+...+.. .|++++|...+++++...+ .+...+..+...+...|+
T Consensus 387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP--RSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhcC
Confidence 999999999999874322 12 3478889999999 9999999999999987642 345677789999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 006744 534 AEKIIEVLNEMTQEG 548 (632)
Q Consensus 534 ~~~a~~~~~~m~~~g 548 (632)
+++|.+.|+++.+..
T Consensus 465 ~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 465 IDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999874
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=7.9e-22 Score=202.87 Aligned_cols=301 Identities=14% Similarity=0.052 Sum_probs=184.1
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280 (632)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 280 (632)
.+...|..+...+.+.|++++|+++|+++.+.. +.+..+|..+..++...|++++|.+.|+++.+.+.. +..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 466778888888999999999999999888753 456788888888999999999999999998887544 677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHH------------HHHccCCHHHHHHHHHHHHhCCCCCCHhc
Q 006744 281 EGLVGEGKVGKACDLLKDLVDSGYRADL---GIYNSIIG------------GLCRVKQFDKAYKLFEVTVQDDLAPDFST 345 (632)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 345 (632)
.+|.+.|++++|.+.|+++.+.... +. ..+..++. .+.+.|++++|+.+|+++.+... .+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence 8999999999999999988876432 33 55555543 36667777777777777665432 24555
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHH-------
Q 006744 346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL------- 418 (632)
Q Consensus 346 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l------- 418 (632)
+..+..+|...|++++|..+++++.+.... +...+..+..+|...|++++|...|+++.+..+.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 666666677777777777766666554321 233444444455555555555555555544443343333333
Q ss_pred -----HHHHHhcCChhhHHHHHHHHhhCCCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 006744 419 -----MGALLEIGEVKKALYLFGKMRGLNLEVN-----SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488 (632)
Q Consensus 419 -----i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 488 (632)
...|.+.|++++|..+|+++.+. .|+ ...+..+..++.+.|++++|...++++.+.. ..+..+|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 44444444444444444444432 122 1233444444444444444444444444322 1133444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHh
Q 006744 489 TKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 489 i~~~~~~g~~~~A~~~~~~~~ 509 (632)
..+|...|++++|...|++++
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al 356 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQ 356 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 444444444444444444444
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.3e-21 Score=201.35 Aligned_cols=345 Identities=12% Similarity=0.055 Sum_probs=272.0
Q ss_pred HHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300 (632)
Q Consensus 221 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 300 (632)
.+...+.+..... +.+...+..+...+.+.|++++|.++|+++.+.... +..++..+..+|...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444432 456788999999999999999999999999987443 78899999999999999999999999999
Q ss_pred HCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----hcHHHH------------HHHHHhcCChhHHHH
Q 006744 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF----STVNPL------------LVCCAEMGRMDNFFK 364 (632)
Q Consensus 301 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~a~~ 364 (632)
+.+.. +..+|..+...|.+.|++++|..+|+++.+.. |+. ..+..+ ...+...|++++|..
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 87654 68899999999999999999999999998754 433 444444 344888999999999
Q ss_pred HHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 006744 365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444 (632)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 444 (632)
.++++.+.... +...+..+..+|.+.|++++|.+.|+++.+..+.+..+|..++.+|...|++++|...|+++... .
T Consensus 165 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 241 (450)
T 2y4t_A 165 FLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--D 241 (450)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 99999876543 56677888889999999999999999998877778899999999999999999999999999864 3
Q ss_pred cCH-HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHhHHHHHHHHHhcCCHHHHHHHHH
Q 006744 445 VNS-LSFSIA------------IQCHVESGDILEACECHNKIIEMSQVPS-----VAAYNCLTKGLCKIGEIDAAMMLVR 506 (632)
Q Consensus 445 p~~-~t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~ 506 (632)
|+. ..+..+ ...|.+.|++++|..+|+++.+.. |+ ...+..+..++.+.|++++|+..++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 443 334333 678899999999999999998854 33 4478888999999999999999999
Q ss_pred HHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHhcC-----CH
Q 006744 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG------------MCKHG-----TL 569 (632)
Q Consensus 507 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~------------~~~~g-----~~ 569 (632)
++++.. ..+...|..+..+|...|++++|+..++++.+.. +-+..++..+..+ |...| +.
T Consensus 320 ~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 320 EVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 988653 2356778889999999999999999999999863 4456677766633 33334 45
Q ss_pred HHHHHHHHH
Q 006744 570 EEARKVFTN 578 (632)
Q Consensus 570 ~~A~~~~~~ 578 (632)
+++.+.+++
T Consensus 397 ~~~~~~y~~ 405 (450)
T 2y4t_A 397 QEIIKAYRK 405 (450)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666777765
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.1e-20 Score=199.15 Aligned_cols=397 Identities=11% Similarity=0.015 Sum_probs=301.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhH
Q 006744 177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256 (632)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 256 (632)
.....|++++|+..|+++.+... .+..+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 34467899999999999887643 378888889999999999999999999888764 4467788888899999999999
Q ss_pred HHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHh---------------------
Q 006744 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG------YRADLG--------------------- 309 (632)
Q Consensus 257 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~--------------------- 309 (632)
|.+.|+. ... .|+ .....+..+...+...+|...++++.... ..|+..
T Consensus 112 A~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLSV-LSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHHH-Hhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 9999863 332 122 12223444555556677888777775431 111111
Q ss_pred ---------hHHHHHHHHHcc--------CCHHHHHHHHHHHHhCCCCCC------HhcHHHHHHHHHhcCChhHHHHHH
Q 006744 310 ---------IYNSIIGGLCRV--------KQFDKAYKLFEVTVQDDLAPD------FSTVNPLLVCCAEMGRMDNFFKLL 366 (632)
Q Consensus 310 ---------~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~ 366 (632)
....+...+... |++++|..+|+++.+...... ..++..+...+...|++++|...+
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 222222222222 478999999999986542211 224666777888999999999999
Q ss_pred HHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcC
Q 006744 367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446 (632)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 446 (632)
+++.+.... ...+..+..++...|++++|.+.|+++.+..+.+..+|..+...+...|++++|...|+++.+.. +.+
T Consensus 267 ~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 343 (537)
T 3fp2_A 267 QESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PEN 343 (537)
T ss_dssp HHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCC
Confidence 999987654 66777888889999999999999999998887789999999999999999999999999998864 345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----ChHHHHH
Q 006744 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG----PTEFKYA 522 (632)
Q Consensus 447 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----p~~~~~~ 522 (632)
...+..+...+...|++++|..+++++.+.. ..+...+..+...+...|++++|.+.|+++++..+.. -....+.
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 6788889999999999999999999999864 3357788899999999999999999999987542211 1222234
Q ss_pred HHHHHHHHc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744 523 LTILHVCRS----------GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 523 ~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 585 (632)
.+...+... |++++|+..++++.+.. +.+..++..+..+|.+.|++++|.+.|++..+....
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 455667777 99999999999999874 567889999999999999999999999999998754
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=2.9e-19 Score=188.21 Aligned_cols=355 Identities=12% Similarity=0.025 Sum_probs=267.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHH
Q 006744 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260 (632)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 260 (632)
.|++++|++.|+++.+.+. .+..+|..+...+...|++++|++.|+.+.. .|+. ....+..+...+...+|...
T Consensus 72 ~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~a~~~ 145 (537)
T 3fp2_A 72 TGDLEKVIEFTTKALEIKP-DHSKALLRRASANESLGNFTDAMFDLSVLSL---NGDF--DGASIEPMLERNLNKQAMKV 145 (537)
T ss_dssp HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---CCCC--ChHHHHHHHHHHHHHHHHHH
Confidence 4566666667777666543 3688999999999999999999999974432 2322 22234455555666778888
Q ss_pred HHHHHHc------CCcccHH------------------------------hHHHHHHHHHh--------cCCHHHHHHHH
Q 006744 261 FREMKEN------GILIDRA------------------------------IYGVLIEGLVG--------EGKVGKACDLL 296 (632)
Q Consensus 261 ~~~m~~~------~~~p~~~------------------------------~~~~li~~~~~--------~g~~~~a~~~~ 296 (632)
++++... ...|+.. ....+...+.. .|++++|..+|
T Consensus 146 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~ 225 (537)
T 3fp2_A 146 LNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMY 225 (537)
T ss_dssp HHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 8877442 1112211 22222222222 24789999999
Q ss_pred HHHHHCCCCCC-------HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHH
Q 006744 297 KDLVDSGYRAD-------LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM 369 (632)
Q Consensus 297 ~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 369 (632)
+++.+.... + ..+|..+...+...|++++|...|+++.+.. |+...+..+...+...|++++|...++++
T Consensus 226 ~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 302 (537)
T 3fp2_A 226 HSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKA 302 (537)
T ss_dssp HHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHH
T ss_pred HHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999876543 2 2356677788899999999999999998754 55778888889999999999999999999
Q ss_pred HHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHH
Q 006744 370 EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS 449 (632)
Q Consensus 370 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 449 (632)
.+.... +...+..+..++...|++++|...|+++.+..+.+..+|..+...|...|++++|..+++++.+.. +.+...
T Consensus 303 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 380 (537)
T 3fp2_A 303 VDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEV 380 (537)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHH
T ss_pred hccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 887643 566788888889999999999999999998887788899999999999999999999999998864 445678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHHhHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCC
Q 006744 450 FSIAIQCHVESGDILEACECHNKIIEMSQV-----PSVAAYNCLTKGLCKI----------GEIDAAMMLVRDCLGNVAS 514 (632)
Q Consensus 450 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~ 514 (632)
+..+...+...|++++|...|+++.+.... .....+..+...+... |++++|+..|+++++..+
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p- 459 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP- 459 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-
Confidence 888999999999999999999998864311 1222344556677777 999999999999987643
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006744 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548 (632)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 548 (632)
.+...|..+...+...|++++|++.|+++.+..
T Consensus 460 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 460 -RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 345677889999999999999999999999874
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=7.9e-19 Score=174.28 Aligned_cols=320 Identities=12% Similarity=0.043 Sum_probs=239.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006744 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316 (632)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 316 (632)
|...+..+...+...|++++|...|+++.+.... +..++..+..++...|++++|...|+++.+.... +...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 4566777888888889999999999988886544 6778888888888999999999999888876543 6678888888
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCC--CCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccH
Q 006744 317 GLCRVKQFDKAYKLFEVTVQDDLA--PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI 394 (632)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (632)
.|...|++++|...|+++.+.... .+...+..+.... .+ .........+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~----------------~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------EM----------------QRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHccCH
Confidence 888889999999999888765320 1222222221111 00 0112234456677888
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744 395 MMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474 (632)
Q Consensus 395 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 474 (632)
++|.+.++++.+..+.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888877766677888888888888888888888888887753 4566778888888888888888888888888
Q ss_pred HCCCCCCHHhHH------------HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChH--HHHHHHHHHHHHcCCHHHHHHH
Q 006744 475 EMSQVPSVAAYN------------CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE--FKYALTILHVCRSGEAEKIIEV 540 (632)
Q Consensus 475 ~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~ 540 (632)
+.... +...+. .+...+.+.|++++|...++++++..+..+.. ..|..+...+...|++++|++.
T Consensus 216 ~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 216 KLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 75422 233222 23666889999999999999988765443332 2355577888899999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 541 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
++++.+.. +.+..+|..+..++...|++++|.+.|+++.+...
T Consensus 295 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 295 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99998873 55788999999999999999999999999998764
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=3e-18 Score=170.03 Aligned_cols=333 Identities=10% Similarity=0.023 Sum_probs=234.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 281 (632)
|+..+..+...+...|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++++.+.... +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 46678889999999999999999999998764 456889999999999999999999999999987543 6788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCCh
Q 006744 282 GLVGEGKVGKACDLLKDLVDSGYR--ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359 (632)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 359 (632)
+|...|++++|...|+++.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999999986431 13344444421100 00122233344455555
Q ss_pred hHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHh
Q 006744 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439 (632)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 439 (632)
++|...++++.+.... +...+..+..++...|++++|...++++.+..+.+..+|..+...+...|++++|...|++..
T Consensus 137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555443322 334444455555566666666666666666555566777777777777777777777777776
Q ss_pred hCCCCcCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHH
Q 006744 440 GLNLEVNSLSFS------------IAIQCHVESGDILEACECHNKIIEMSQVPSV----AAYNCLTKGLCKIGEIDAAMM 503 (632)
Q Consensus 440 ~~~~~p~~~t~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~ 503 (632)
+.. +.+...+. .+...+...|++++|...++++.+.... +. ..+..+..++...|++++|+.
T Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 642 22222222 2355678889999999999988875432 22 234557788889999999999
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006744 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565 (632)
Q Consensus 504 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 565 (632)
.++++++.. ..+...|..+...+...|++++|++.|+++.+.. +.+...+..+..+...
T Consensus 294 ~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 294 ICSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 999888753 2345677778888899999999999999998874 4456666666665443
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=8.6e-16 Score=159.28 Aligned_cols=354 Identities=10% Similarity=-0.040 Sum_probs=273.1
Q ss_pred CHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCcccH
Q 006744 202 DVFAYTAMIRVLAA----ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK----GGRVVRGHELFREMKENGILIDR 273 (632)
Q Consensus 202 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~ 273 (632)
+..++..+...|.. .+++++|++.|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55666666666766 788888888888877754 55677777777777 788888888888887765 55
Q ss_pred HhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhc
Q 006744 274 AIYGVLIEGLVG----EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR----VKQFDKAYKLFEVTVQDDLAPDFST 345 (632)
Q Consensus 274 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~ 345 (632)
..+..|...|.. .++.++|...|++..+.| +...+..|...|.. .+++++|+++|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 666677777777 778888888888887764 45667777777776 678888888888887764 5566
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhh----cccHHHHHHHHHHHHhCCCCChhHHHH
Q 006744 346 VNPLLVCCAE----MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK----EERIMMALDVFEELKGKGYSSVPIYNI 417 (632)
Q Consensus 346 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 417 (632)
+..+...|.. .++.++|..++++..+.+. ......+..+|.. .++.++|...|++..+.+ +...+..
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~ 260 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSGD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--CHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 7777777776 7788888888888877653 3445555556654 788888998888887765 5667777
Q ss_pred HHHHHHh----cCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 006744 418 LMGALLE----IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES-----GDILEACECHNKIIEMSQVPSVAAYNCL 488 (632)
Q Consensus 418 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~l 488 (632)
+...|.. .++.++|+..|++..+.| +...+..+...|... ++.++|...|++..+.+ +...+..|
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 334 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANL 334 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHH
Confidence 8888877 889999999999988765 445666777777776 89999999999998865 45667778
Q ss_pred HHHHHhcC---CHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006744 489 TKGLCKIG---EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR----SGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561 (632)
Q Consensus 489 i~~~~~~g---~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 561 (632)
...|...| ++++|++.|++..+. .+...+..+...|.. .+++++|++.|++..+.| +...+..|..
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 88887766 789999999998865 245566668888887 789999999999999876 5778888888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCCC
Q 006744 562 GMCK----HGTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 562 ~~~~----~g~~~~A~~~~~~m~~~~~~ 585 (632)
.|.+ .++.++|.+.|++..+.+..
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 8888 89999999999999998743
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=6.1e-16 Score=160.41 Aligned_cols=358 Identities=9% Similarity=-0.022 Sum_probs=284.3
Q ss_pred CCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh----cCChhHHHHH
Q 006744 150 HNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA----ERNLDACLRV 225 (632)
Q Consensus 150 ~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 225 (632)
-+...+..|...|..-.. ..+++++|+..|++..+. -+..++..|...|.. .+++++|.+.
T Consensus 37 g~~~a~~~lg~~y~~g~~------------~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNE------------TTKDLTQAMDWFRRAAEQ---GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp TCHHHHHHHHHHHHHTSS------------SCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCC------------CCcCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 366677777777665100 123444455555555444 256677788888888 8999999999
Q ss_pred HHHHHhCCCCcCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh----cCCHHHHHHHHH
Q 006744 226 WEEMKKDLVEADVMAYVTLIMGLCK----GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG----EGKVGKACDLLK 297 (632)
Q Consensus 226 ~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~ 297 (632)
|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|.+.|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998865 56777778888887 789999999999998875 56677888888887 789999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHh----cCChhHHHHHHHHH
Q 006744 298 DLVDSGYRADLGIYNSIIGGLCR----VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE----MGRMDNFFKLLAQM 369 (632)
Q Consensus 298 ~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~ 369 (632)
+..+.| +...+..|...|.. .+++++|.++|++..+.| +...+..+...|.. .+++++|..++++.
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 998874 67788888888887 899999999999988765 45677777777776 78999999999998
Q ss_pred HHCCCCccccHHHHHHHHhhh----cccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-----CChhhHHHHHHHHhh
Q 006744 370 EKLKFSVAADLEKFFEFLVGK----EERIMMALDVFEELKGKGYSSVPIYNILMGALLEI-----GEVKKALYLFGKMRG 440 (632)
Q Consensus 370 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~ 440 (632)
.+.+. ......+..+|.. .++.++|.+.|++..+.+ +...+..+...|... +++++|...|++..+
T Consensus 250 ~~~~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 250 AEQGN---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp HTTTC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HHCCC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 88763 3455556666666 899999999999998775 677888888888887 899999999999988
Q ss_pred CCCCcCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCC
Q 006744 441 LNLEVNSLSFSIAIQCHVESG---DILEACECHNKIIEMSQVPSVAAYNCLTKGLCK----IGEIDAAMMLVRDCLGNVA 513 (632)
Q Consensus 441 ~~~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~ 513 (632)
.| +...+..+...|...| +.++|.++|++..+.+ +...+..|...|.. .+++++|...|++..+..
T Consensus 325 ~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~- 397 (490)
T 2xm6_A 325 QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG- 397 (490)
T ss_dssp TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 75 4456677777777766 7899999999999864 67788889999988 899999999999988752
Q ss_pred CCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCC
Q 006744 514 SGPTEFKYALTILHVCR----SGEAEKIIEVLNEMTQEGC 549 (632)
Q Consensus 514 ~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 549 (632)
+...+..+...|.. .++.++|...|++..+.+.
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 45566678888887 7999999999999998863
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=8.1e-18 Score=164.91 Aligned_cols=292 Identities=12% Similarity=-0.036 Sum_probs=159.5
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006744 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315 (632)
Q Consensus 236 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 315 (632)
.+...+..+...+...|++++|.++|+++.+.... +...+..++.++...|++++|..+++++.+.... +...|..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 34455555666666666666666666666554332 3445555556666666666666666666654332 445555566
Q ss_pred HHHHccC-CHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccH
Q 006744 316 GGLCRVK-QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI 394 (632)
Q Consensus 316 ~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (632)
..+...| ++++|...|++..+.... +...+..+...+...|++++|...++++.+.
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---------------------- 154 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQL---------------------- 154 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------------
Confidence 6666666 666666666665544311 2334445555555555555555555554443
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744 395 MMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474 (632)
Q Consensus 395 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 474 (632)
.+.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 155 -------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 155 -------------MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp -------------TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 32233444445555555555555555555555432 2334455555555555555555555555555
Q ss_pred HCC--------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744 475 EMS--------QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546 (632)
Q Consensus 475 ~~~--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 546 (632)
+.. ...+..++..+..+|...|++++|+..++++++..+. +...|..+...+...|++++|.+.++++.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ--NASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc--chHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 421 0222455666666666666666666666666654322 234455566666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHH-HhcCCH
Q 006744 547 EGCPPNEVICSAIISGM-CKHGTL 569 (632)
Q Consensus 547 ~g~~p~~~~~~~l~~~~-~~~g~~ 569 (632)
.. +.+...+..+..++ ...|+.
T Consensus 299 ~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 299 LR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred cC-CCchHHHHHHHHHHHHHhCch
Confidence 53 34555666666655 344443
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.9e-17 Score=162.23 Aligned_cols=294 Identities=9% Similarity=-0.027 Sum_probs=220.2
Q ss_pred CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHH
Q 006744 199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278 (632)
Q Consensus 199 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 278 (632)
...+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.... +..++..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 34566778888999999999999999999998764 445677778889999999999999999999987544 6788999
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcC
Q 006744 279 LIEGLVGEG-KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357 (632)
Q Consensus 279 li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 357 (632)
+...+...| ++++|...|+++.+.... +...|..+...+...|++++|+..|+++.+.... +...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence 999999999 999999999999987654 6778999999999999999999999999876432 3345555666666666
Q ss_pred ChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHH
Q 006744 358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGK 437 (632)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 437 (632)
++++|...++++.+.. +.+..++..+...+...|++++|...+++
T Consensus 174 ~~~~A~~~~~~al~~~-----------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-----------------------------------PEDPFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp CHHHHHHHHHHHHTTC-----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-----------------------------------CCChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 6666666666655543 33566677777777777777777777777
Q ss_pred HhhCC--------CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 438 MRGLN--------LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 438 m~~~~--------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
+.... .+.+..++..+...+...|++++|...++++.+... .+...+..+..+|.+.|++++|.+.|++++
T Consensus 219 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 65531 123345777777788888888888888888877542 356677788888888888888888888876
Q ss_pred hcCCCCChHHHHHHHHHHH-HHcCCH
Q 006744 510 GNVASGPTEFKYALTILHV-CRSGEA 534 (632)
Q Consensus 510 ~~~~~~p~~~~~~~l~~~~-~~~g~~ 534 (632)
+..+ .+...+..+..++ ...|+.
T Consensus 298 ~~~p--~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 298 GLRR--DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TTCS--CCHHHHHHHHHHHHTTTTC-
T ss_pred ccCC--CchHHHHHHHHHHHHHhCch
Confidence 5422 2344555555555 233443
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=6e-16 Score=162.17 Aligned_cols=409 Identities=10% Similarity=0.030 Sum_probs=253.4
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 006744 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE 228 (632)
Q Consensus 149 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 228 (632)
+-|...|..++.. .+.|+++. |..+|+++.+. .+-+...|..++..+.+.|++++|.++|++
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~----------------a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~r 71 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDK----------------ARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQR 71 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHH----------------HHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHH----------------HHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4577788888773 55555544 44555555544 234677899999999999999999999999
Q ss_pred HHhCCCCcCHHhHHHHHHHH-HhcCChhHHHH----HHHHHHH-cCCcc-cHHhHHHHHHHHHh---------cCCHHHH
Q 006744 229 MKKDLVEADVMAYVTLIMGL-CKGGRVVRGHE----LFREMKE-NGILI-DRAIYGVLIEGLVG---------EGKVGKA 292 (632)
Q Consensus 229 m~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~----~~~~m~~-~~~~p-~~~~~~~li~~~~~---------~g~~~~a 292 (632)
..+. .|+...|...+... ...|+.++|.+ +|+...+ .|..| +...|...+....+ .|+++.|
T Consensus 72 al~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a 149 (530)
T 2ooe_A 72 CLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAV 149 (530)
T ss_dssp HTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHH
T ss_pred HHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHH
Confidence 9876 36877777777533 35677777765 6666654 35443 45677777776654 6889999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHH-------------HccCCHHHHHHHHHHHH------hCC---CCCC--------
Q 006744 293 CDLLKDLVDSGYRADLGIYNSIIGGL-------------CRVKQFDKAYKLFEVTV------QDD---LAPD-------- 342 (632)
Q Consensus 293 ~~~~~~m~~~g~~~~~~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~~---~~p~-------- 342 (632)
..+|++..+.........|....... .+.++++.|..++.++. +.. +.|+
T Consensus 150 ~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 150 RRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 99999998731111123343322211 12345667776666532 211 2332
Q ss_pred HhcHHHHHHHHHhc----CCh----hHHHHHHHHHHHCCCCccccHHHHHHHHhhh-------cccHH-------HHHHH
Q 006744 343 FSTVNPLLVCCAEM----GRM----DNFFKLLAQMEKLKFSVAADLEKFFEFLVGK-------EERIM-------MALDV 400 (632)
Q Consensus 343 ~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~ 400 (632)
...|...+...... ++. +.+..+|+++..... .+..++..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 12333333222221 122 255667777666532 234444444444443 57765 77777
Q ss_pred HHHHHh-CCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006744 401 FEELKG-KGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS--LSFSIAIQCHVESGDILEACECHNKIIEMS 477 (632)
Q Consensus 401 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 477 (632)
|++..+ ..+.+...|..++..+.+.|++++|..+|+++.+. .|+. ..|...+..+.+.|++++|.++|++..+..
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 386 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 777776 44446777777777777788888888888877763 4432 366777777777777888888887777642
Q ss_pred CCCCHHhHHHHHHH-HHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCC--CH
Q 006744 478 QVPSVAAYNCLTKG-LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG-CPP--NE 553 (632)
Q Consensus 478 ~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~ 553 (632)
. .+...|...+.. +...|+.++|..+|++.++..+ .+...|..++..+.+.|+.++|..+|++....+ ..| ..
T Consensus 387 ~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p--~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 387 R-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp T-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred C-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 1 122222222211 2357778888888877776532 234556667777777778888888888777653 122 24
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 554 VICSAIISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
..|...+......|+.+.+.++++++.+.-
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467777777777788877777777776653
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=3.4e-16 Score=164.01 Aligned_cols=403 Identities=11% Similarity=0.064 Sum_probs=283.8
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280 (632)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 280 (632)
-|..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|++++|.++|+++.+.. |+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 37889999998 478999999999999999763 4577889999999999999999999999998864 5777777777
Q ss_pred HHH-HhcCCHHHHHH----HHHHHHHC-CCCC-CHhhHHHHHHHHHc---------cCCHHHHHHHHHHHHhCCCCCCHh
Q 006744 281 EGL-VGEGKVGKACD----LLKDLVDS-GYRA-DLGIYNSIIGGLCR---------VKQFDKAYKLFEVTVQDDLAPDFS 344 (632)
Q Consensus 281 ~~~-~~~g~~~~a~~----~~~~m~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~ 344 (632)
... ...|+.++|.+ +|+..... |..| +...|...+....+ .|++++|..+|++..+........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 34677766655 77776553 5443 46678877776654 688999999999998731111122
Q ss_pred cHHHHHHHH-------------HhcCChhHHHHHHHHHH------HCC---CCccc--------cHHHHHHHHhhh----
Q 006744 345 TVNPLLVCC-------------AEMGRMDNFFKLLAQME------KLK---FSVAA--------DLEKFFEFLVGK---- 390 (632)
Q Consensus 345 ~~~~ll~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~~--------~~~~~l~~~~~~---- 390 (632)
.|....... ...++++.|..++..+. +.. ++|.. ..+...+.....
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 333222211 12345666776666532 111 12221 122222221111
Q ss_pred cccH----HHHHHHHHHHHhCCCCChhHHHHHHHHHHh-------cCChh-------hHHHHHHHHhhCCCCcCHHHHHH
Q 006744 391 EERI----MMALDVFEELKGKGYSSVPIYNILMGALLE-------IGEVK-------KALYLFGKMRGLNLEVNSLSFSI 452 (632)
Q Consensus 391 ~g~~----~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~p~~~t~~~ 452 (632)
.++. +.+..+|++.....+.+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...+..
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 1222 477889999888777789999999998886 79987 89999999986323445778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 006744 453 AIQCHVESGDILEACECHNKIIEMSQVPS--VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530 (632)
Q Consensus 453 ll~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 530 (632)
++..+.+.|++++|..+|+++++. .|+ ...|..++..+.+.|++++|.++|++.++.....+.......++ .+..
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~-~~~~ 403 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM-EYYC 403 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH-HHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH-HHHH
Confidence 889999999999999999999985 343 35888899999999999999999999987644333322222222 2336
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CCChhhHHHHHHHHhhhchhHHH
Q 006744 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT-EANTIVYDEILIEHMKKKTADLV 609 (632)
Q Consensus 531 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~v 609 (632)
.|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|+.+|++....+..+ ......+...+.-....++.+.+
T Consensus 404 ~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp TCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred cCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999998873 5578899999999999999999999999999986432 22233444433333334544444
Q ss_pred Hh
Q 006744 610 LS 611 (632)
Q Consensus 610 ~~ 611 (632)
.+
T Consensus 483 ~~ 484 (530)
T 2ooe_A 483 LK 484 (530)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=9e-18 Score=167.43 Aligned_cols=273 Identities=10% Similarity=-0.010 Sum_probs=134.9
Q ss_pred HHHhcCChhHHHH-HHHHHHhCCC-Cc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcC
Q 006744 212 VLAAERNLDACLR-VWEEMKKDLV-EA--DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287 (632)
Q Consensus 212 ~~~~~g~~~~A~~-~~~~m~~~~~-~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 287 (632)
.+...|++++|++ .|++..+..- .| +...+..+...+...|++++|...|+++.+.... +..++..+..+|.+.|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCc
Confidence 3445566666666 6664443210 01 2345666666677777777777777777665433 5566666667777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHH
Q 006744 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367 (632)
Q Consensus 288 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 367 (632)
++++|...|+++.+.... +..++..+...|...|++++|...++++.+.... +...+..+... ...
T Consensus 113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~----- 178 (368)
T 1fch_A 113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AGG----- 178 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hhh-----
Confidence 777777777776665433 5566666666677777777777777666654322 11111111000 000
Q ss_pred HHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 006744 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS--SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445 (632)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 445 (632)
.. .......+...+ ..|++++|...|+++.+..+. +..++..+...|...|++++|...|+++.... +.
T Consensus 179 --~~-----~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 179 --AG-----LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred --hc-----ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 00 000000111122 455566666666655555444 45555666666666666666666666555432 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 446 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
+...+..+...+...|++++|...|+++.+.. +.+...+..+..+|.+.|++++|...|++++
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555555555555555432 1234444555555555555555555555444
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=8e-18 Score=167.81 Aligned_cols=303 Identities=14% Similarity=0.040 Sum_probs=207.3
Q ss_pred cCCHHHHHH-HHHHHHhCCC---CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhH
Q 006744 181 QGRIAEMLE-ILEKMRRNLC---KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256 (632)
Q Consensus 181 ~g~~~~a~~-~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 256 (632)
.|++++|++ .|++..+... ..+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 467888888 7776554322 1145678889999999999999999999999875 4578899999999999999999
Q ss_pred HHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006744 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336 (632)
Q Consensus 257 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (632)
|.+.|+++.+.+.. +..++..+..+|...|++++|.+.|+++...... +...+..+... ..
T Consensus 117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~---------- 177 (368)
T 1fch_A 117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG---------- 177 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh----------
Confidence 99999999987644 7889999999999999999999999999987543 22232211000 00
Q ss_pred CCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-cccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHH
Q 006744 337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV-AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIY 415 (632)
Q Consensus 337 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 415 (632)
...+. ..+. .+..+...|++++|...++++.+..... +...+..+..+|...|++++|...|+++.+..+.+..+|
T Consensus 178 -~~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 254 (368)
T 1fch_A 178 -GAGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW 254 (368)
T ss_dssp ----------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -hhccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 00000 0011 1111224555555555555555543321 234445555556666666666666666666555577788
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----------CHHhH
Q 006744 416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP----------SVAAY 485 (632)
Q Consensus 416 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p----------~~~~~ 485 (632)
..+...+...|++++|...|+++.+.. +.+...+..+..+|.+.|++++|...|+++.+..... ...+|
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 888888888888888888888887753 3456778888888888888888888888887643211 25778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 006744 486 NCLTKGLCKIGEIDAAMMLVRD 507 (632)
Q Consensus 486 ~~li~~~~~~g~~~~A~~~~~~ 507 (632)
..+..+|...|++++|..++++
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHhCChHhHHHhHHH
Confidence 8888888888988888887764
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.4e-17 Score=162.18 Aligned_cols=289 Identities=13% Similarity=0.081 Sum_probs=122.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006744 120 DLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLC 199 (632)
Q Consensus 120 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 199 (632)
+.+..++...++.+.|.++++.. ++..+|..|+.++.+.|++++|++.|.+.
T Consensus 7 ~a~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika--------------------- 58 (449)
T 1b89_A 7 SAVQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--------------------- 58 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC---------------------
Confidence 34555667778899999999876 23359999999999998888877776421
Q ss_pred CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHH
Q 006744 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL 279 (632)
Q Consensus 200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 279 (632)
+|..+|..++..+...|++++|+..++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+
T Consensus 59 -~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~I 128 (449)
T 1b89_A 59 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQV 128 (449)
T ss_dssp -----------------------------------------------------CHHHHTTTTT-------CC--------
T ss_pred -CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHH
Confidence 46678888888888899999999977766654 4567778888899999999988888875 2566788999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCCh
Q 006744 280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359 (632)
Q Consensus 280 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 359 (632)
.+.|...|.+++|..+|..+ ..|..|+.++.+.|++++|++.++++ .+..+|..++.+|...|++
T Consensus 129 Gd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef 193 (449)
T 1b89_A 129 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF 193 (449)
T ss_dssp --------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcH
Confidence 99999999999999999866 47888999999999999999999887 2677888999999999999
Q ss_pred hHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--CChhhHHHHHHH
Q 006744 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEI--GEVKKALYLFGK 437 (632)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~ 437 (632)
+.|...... +...+.-...++..|.+.|++++|..+++............|+-|.-+|++- ++..+.++.|..
T Consensus 194 ~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 194 RLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp HHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 888544433 2233344555777888888899998888888877655778888888887775 334444444431
Q ss_pred HhhCCCCc------CHHHHHHHHHHHHHcCCHHHHHH
Q 006744 438 MRGLNLEV------NSLSFSIAIQCHVESGDILEACE 468 (632)
Q Consensus 438 m~~~~~~p------~~~t~~~ll~~~~~~g~~~~a~~ 468 (632)
- .+++| +...|..+...|.+.++++.|..
T Consensus 269 ~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 269 R--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp T--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred H--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 1 12332 34456667777777777777665
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=8.8e-18 Score=167.34 Aligned_cols=238 Identities=11% Similarity=0.008 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006744 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320 (632)
Q Consensus 241 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 320 (632)
+..+...+.+.|++++|.++|+++.+.... +..+|..+..+|.+.|++++|+..|+++.+.... +..+|..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHc
Confidence 444455555555555555555555444322 3444555555555555555555555555443322 34444444455555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHh-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHH
Q 006744 321 VKQFDKAYKLFEVTVQDDLAPDFS-TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALD 399 (632)
Q Consensus 321 ~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 399 (632)
.|++++|+..|+++.+.. |+.. .+..+. ....+...+..++...|++++|.+
T Consensus 146 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A~~ 198 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEGVKE 198 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHHHHH
Confidence 555555555554444321 1100 000000 001111222334445555555555
Q ss_pred HHHHHHhCCCC--ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006744 400 VFEELKGKGYS--SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477 (632)
Q Consensus 400 ~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 477 (632)
.|+++.+..+. +..+|..+...|...|++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++++..
T Consensus 199 ~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55555544444 44555555555555555555555555554432 2234444444444555555555555555444432
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 478 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
+.+..++..+..+|...|++++|...|++++
T Consensus 278 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 278 -PGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp -TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1124444444444444444444444444443
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=9.1e-18 Score=167.24 Aligned_cols=267 Identities=11% Similarity=-0.015 Sum_probs=192.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 281 (632)
+...|..+...+.+.|++++|+++|+++.+.. +.+..+|..+..++...|++++|++.|+++.+.... +..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 45568899999999999999999999998865 457889999999999999999999999999987543 6889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH----------HHHHHccCCHHHHHHHHHHHHhCCCC-CCHhcHHHHH
Q 006744 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI----------IGGLCRVKQFDKAYKLFEVTVQDDLA-PDFSTVNPLL 350 (632)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l----------i~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll 350 (632)
+|...|++++|...|+++.+.... +...+..+ ...+.+.|++++|+.+|+++.+.... .+..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999999886422 22233322 55666677777777777766654321 1344555555
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhh
Q 006744 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKK 430 (632)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 430 (632)
..+...|++++|...++++ .+..+.+..+|+.+..+|...|++++
T Consensus 221 ~~~~~~g~~~~A~~~~~~a-----------------------------------l~~~p~~~~~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAA-----------------------------------LTVRPEDYSLWNRLGATLANGDRSEE 265 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHH-----------------------------------HHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHH-----------------------------------HHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555544 44444466677888888888888888
Q ss_pred HHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----------CCHHhHHHHHHHHHhcCCHH
Q 006744 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-----------PSVAAYNCLTKGLCKIGEID 499 (632)
Q Consensus 431 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----------p~~~~~~~li~~~~~~g~~~ 499 (632)
|...|+++.+.. +.+..++..+..+|...|++++|...|+++.+.... .+..+|..+..++...|+.+
T Consensus 266 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 266 AVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 888888777643 334667777777888888888888888877754211 13567888888888889888
Q ss_pred HHHHHHHH
Q 006744 500 AAMMLVRD 507 (632)
Q Consensus 500 ~A~~~~~~ 507 (632)
.+.++.++
T Consensus 345 ~a~~~~~~ 352 (365)
T 4eqf_A 345 LFQAANLG 352 (365)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 88877654
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=1.5e-14 Score=157.01 Aligned_cols=433 Identities=12% Similarity=0.114 Sum_probs=298.3
Q ss_pred CCChHHHHHHHhcCCChhHHHHHHHHhhhcC-CCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCC-------HHHH
Q 006744 116 RVTPDLVAEVLKVENNPTLASKFFHWAGKQK-GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR-------IAEM 187 (632)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~-------~~~a 187 (632)
+-++++=..||...+..+ ..+.+|...-. --.-++.--...+.+|...|.+.+|.++++.+.-.+. .+.+
T Consensus 950 r~d~~lW~~vl~~~n~~R--R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl 1027 (1630)
T 1xi4_A 950 RKDPELWGSVLLESNPYR--RPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL 1027 (1630)
T ss_pred hcCHHHHHHHhcCCcHHH--HHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH
Confidence 456777777776655333 24445532110 0123344445677888888888888888888774332 1111
Q ss_pred HHHHHHHHhCCCC--------cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHH
Q 006744 188 LEILEKMRRNLCK--------PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259 (632)
Q Consensus 188 ~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 259 (632)
+.....+.... .+.....-+...+...|.+++|..+|++.. -.....+.++. ..+++++|.+
T Consensus 1028 --Li~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE 1097 (1630)
T 1xi4_A 1028 --LILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYE 1097 (1630)
T ss_pred --HHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHH
Confidence 11111111110 111113335677888999999999999863 22233344433 6678999999
Q ss_pred HHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006744 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339 (632)
Q Consensus 260 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 339 (632)
+.++. -+..+|..+..++.+.|++++|++.|.+. -|...|..++.++.+.|++++|.++|....+..
T Consensus 1098 ~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~- 1164 (1630)
T 1xi4_A 1098 FAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA- 1164 (1630)
T ss_pred HHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-
Confidence 98865 25778999999999999999999999664 277888889999999999999999999877654
Q ss_pred CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006744 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419 (632)
Q Consensus 340 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 419 (632)
++....+.++.+|++.++++....++ + + ++...+..+...|...|++++|...|... ..|..+.
T Consensus 1165 -~e~~Idt~LafaYAKl~rleele~fI----~-~--~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA 1228 (1630)
T 1xi4_A 1165 -RESYVETELIFALAKTNRLAELEEFI----N-G--PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLA 1228 (1630)
T ss_pred -ccccccHHHHHHHHhhcCHHHHHHHH----h-C--CCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHH
Confidence 33333445888999999888644443 1 1 23344456888889999999999999985 3599999
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 006744 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID 499 (632)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 499 (632)
.+|++.|++++|.+.+++. -+..+|..+-.+|...|++..|..+...+ ..+...+..++..|.+.|.++
T Consensus 1229 ~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1229 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999876 35688999999999999999998876643 346667889999999999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHH
Q 006744 500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRS--GEAEKIIEVLNEMTQEGCPP------NEVICSAIISGMCKHGTLEE 571 (632)
Q Consensus 500 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~~ 571 (632)
+|+.+++..+... .-....|+-+...|++. ++..+++++|..-.. +++ +...|..++..|.+.|+++.
T Consensus 1298 EAI~LlE~aL~Le--raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dn 1373 (1630)
T 1xi4_A 1298 ELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDN 1373 (1630)
T ss_pred HHHHHHHHHhccC--hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHH
Confidence 9999999877543 23344566677777655 566677777664332 222 56789999999999999999
Q ss_pred HHHHH--------HHHHHC-CCCCCCChhhHHHHHHHHhhhc
Q 006744 572 ARKVF--------TNLRER-KLLTEANTIVYDEILIEHMKKK 604 (632)
Q Consensus 572 A~~~~--------~~m~~~-~~~~~~~~~~~~~l~~~~~~~~ 604 (632)
|.... +.-.-+ -+....+...|...+.-++...
T Consensus 1374 A~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1374 AIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 98332 211111 1223345556666666665544
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=182.57 Aligned_cols=153 Identities=12% Similarity=0.107 Sum_probs=129.1
Q ss_pred CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhH
Q 006744 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKK---DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276 (632)
Q Consensus 200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 276 (632)
.--..+||+||++||+.|++++|.++|++|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34467899999999999999999999988764 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC------HhcHHHH
Q 006744 277 GVLIEGLVGEGK-VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD------FSTVNPL 349 (632)
Q Consensus 277 ~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~l 349 (632)
++||+++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+. .+++.++++ ..+..|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 999999999998 578999999999999999999999998766554 344444444 3345544 4555566
Q ss_pred HHHHHhcC
Q 006744 350 LVCCAEMG 357 (632)
Q Consensus 350 l~~~~~~~ 357 (632)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 67776655
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=4.5e-17 Score=158.65 Aligned_cols=220 Identities=10% Similarity=0.091 Sum_probs=57.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHH
Q 006744 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE 259 (632)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 259 (632)
..|++++|.+.++++ ++..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 446677777777776 23347777777777777777777777542 456677777777777777777777
Q ss_pred HHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006744 260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339 (632)
Q Consensus 260 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 339 (632)
.++..++. .++..+.+.|+.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 66655553 3345667777777777777777776664 245567777777777777777777777755
Q ss_pred CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006744 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419 (632)
Q Consensus 340 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 419 (632)
..|..++.++.+.|++++|.+.+.++ .+..++..++.+|...|+++.|......+. ..+.-...++
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~~ad~l~~lv 214 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELI 214 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----TCHHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----hCHhhHHHHH
Confidence 36666777777777776666666655 123334444444444444444433322211 0222223344
Q ss_pred HHHHhcCChhhHHHHHHHHh
Q 006744 420 GALLEIGEVKKALYLFGKMR 439 (632)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~m~ 439 (632)
..|.+.|++++|..+++...
T Consensus 215 ~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHh
Confidence 44444444444444444444
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=1.8e-16 Score=155.04 Aligned_cols=277 Identities=9% Similarity=-0.038 Sum_probs=158.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006744 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320 (632)
Q Consensus 241 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 320 (632)
+..+...+...|++++|..+|+++.+.... +..++..+..++...|++++|...|+++.+.... +..++..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHH
Confidence 344444555555555555555555544322 4445555555555555555555555555554322 44555555566666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHH-HH-HhhhcccHHHHH
Q 006744 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF-EF-LVGKEERIMMAL 398 (632)
Q Consensus 321 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~a~ 398 (632)
.|++++|.+.++++.+.... +...+..+...+ ++......+ .. ++...|++++|.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHHH
Confidence 66666666666655543211 111111111000 000000011 11 245566777777
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006744 399 DVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478 (632)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 478 (632)
+.++++.+..+.+..++..+...|...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 236 (327)
T 3cv0_A 159 TLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN- 236 (327)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 77777666655566777777777777777777777777776643 3345667777777777777777777777777643
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----------ChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006744 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG----------PTEFKYALTILHVCRSGEAEKIIEVLNEM 544 (632)
Q Consensus 479 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 544 (632)
..+...+..+...|...|++++|.+.+++++...+.. .+...|..+...+...|++++|..++++.
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2346667777777777777777777777766542210 03556777777777778887777777644
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=180.40 Aligned_cols=153 Identities=16% Similarity=0.179 Sum_probs=126.6
Q ss_pred CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHH---cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 006744 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKE---NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY 311 (632)
Q Consensus 235 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 311 (632)
.--..|||++|++||+.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34467999999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcc------ccHHHHH
Q 006744 312 NSIIGGLCRVKQ-FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA------ADLEKFF 384 (632)
Q Consensus 312 ~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l 384 (632)
|+||.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+.+ +++.++++ .-++.+. ......+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 999999999998 4789999999999999999999999987655432 33333333 2233332 3344556
Q ss_pred HHHhhhcc
Q 006744 385 EFLVGKEE 392 (632)
Q Consensus 385 ~~~~~~~g 392 (632)
...|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 66676554
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.9e-15 Score=156.07 Aligned_cols=368 Identities=8% Similarity=-0.069 Sum_probs=245.4
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C---CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 006744 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKD-----L---VEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN----- 267 (632)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 267 (632)
.....||.|...+...|++++|++.|++..+. + -.....+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999876542 1 1224578999999999999999999999887652
Q ss_pred C-Cc-ccHHhHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHccCCHHHHHHHHHHHHhCCCC
Q 006744 268 G-IL-IDRAIYGVLIEGLVGE--GKVGKACDLLKDLVDSGYRADLGIYNSIIGG---LCRVKQFDKAYKLFEVTVQDDLA 340 (632)
Q Consensus 268 ~-~~-p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~ 340 (632)
+ .. -...++..+..++.+. +++++|++.|++..+..+. +...+..+..+ +...++.++|++.+++..+.+..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 11 1345666666666554 4689999999999887543 45555555444 44567888899999888765422
Q ss_pred CCHhcHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHH
Q 006744 341 PDFSTVNPLLVCCAE----MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN 416 (632)
Q Consensus 341 p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 416 (632)
+...+..+...+.. .+++++|.+.+++....... ....+..+...|...|++++|...+++..+..+.+..++.
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 44455555444444 45778899999988776543 4556777888899999999999999999988877888888
Q ss_pred HHHHHHHhc-------------------CChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006744 417 ILMGALLEI-------------------GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS 477 (632)
Q Consensus 417 ~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 477 (632)
.+..+|... +.+++|...+++..... +.+..++..+...+...|++++|.+.|++.++..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 887776432 23566777777776643 3445567788888999999999999999988765
Q ss_pred CCCCH--HhHHHHHH-HHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 006744 478 QVPSV--AAYNCLTK-GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554 (632)
Q Consensus 478 ~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 554 (632)
..+.. ..+..+.. .+...|++++|+..|++.++.. |+..... +....+.++++...+.+ +.+..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~---~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~ 431 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN---QKSREKE---------KMKDKLQKIAKMRLSKN-GADSE 431 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC---CCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTT
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHH---------HHHHHHHHHHHHHHHhC-CCCHH
Confidence 43321 12233332 2346788999999998887643 3322221 12234455566655553 66788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744 555 ICSAIISGMCKHGTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 585 (632)
+|..|..+|...|++++|.+.|++.++.+..
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999987654
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=2.3e-16 Score=154.31 Aligned_cols=268 Identities=11% Similarity=-0.030 Sum_probs=186.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 281 (632)
+...|..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|.+.++++.+.... +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 44557778888899999999999999988764 447788888899999999999999999999887543 6788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH--------------HH-HHHccCCHHHHHHHHHHHHhCCCCCCHhcH
Q 006744 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI--------------IG-GLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346 (632)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 346 (632)
.|...|++++|.+.++++.+.... +...+..+ .. .+...|++++|..+++++.+.... +...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 999999999999999999876433 33333333 11 255556666666666666554322 34445
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 006744 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIG 426 (632)
Q Consensus 347 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 426 (632)
..+...+...|++++|...++++. +..+.+..+|..+...+...|
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~-----------------------------------~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAV-----------------------------------ELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-----------------------------------HHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH-----------------------------------HhCCCcHHHHHHHHHHHHHcC
Confidence 555555555555555555555444 433345666777777777777
Q ss_pred ChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----------CHHhHHHHHHHHHhc
Q 006744 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP-----------SVAAYNCLTKGLCKI 495 (632)
Q Consensus 427 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~ 495 (632)
++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+..... +...+..+..++.+.
T Consensus 221 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 221 RPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 7777777777776643 3345667777777777778888877777777643221 466777788888888
Q ss_pred CCHHHHHHHHHHHh
Q 006744 496 GEIDAAMMLVRDCL 509 (632)
Q Consensus 496 g~~~~A~~~~~~~~ 509 (632)
|++++|..++++.+
T Consensus 300 g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 300 NRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHH
Confidence 88888888876544
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1e-15 Score=146.27 Aligned_cols=223 Identities=10% Similarity=0.035 Sum_probs=115.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcc
Q 006744 243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA-DLGIYNSIIGGLCRV 321 (632)
Q Consensus 243 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~ 321 (632)
.+..+|...|++++|+..++. .-.|+..++..+...+...|+.++|++.++++...+..| +...+..+...+.+.
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~ 114 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD 114 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC
Confidence 334444444554444443322 122334444444444444455555555555544443222 223333334444555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcc-ccHHHHHHHHhhhcccHHHHHHH
Q 006744 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA-ADLEKFFEFLVGKEERIMMALDV 400 (632)
Q Consensus 322 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~ 400 (632)
|++++|++.+++ ..+...+..+...+.+.|++++|.+.++++.+...... ..+....+..+...|++++|..+
T Consensus 115 g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~ 188 (291)
T 3mkr_A 115 QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI 188 (291)
T ss_dssp TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 555555554443 12333444444445555555555555555444321100 00011122223344667777777
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHC
Q 006744 401 FEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE-ACECHNKIIEM 476 (632)
Q Consensus 401 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~~ 476 (632)
|+++.+..+.+...|+.+..++.+.|++++|...|++..+.. +-+..++..++..+...|+.++ +.++++++.+.
T Consensus 189 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 189 FQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 777666655577777777777777777777777777776643 3355566667777777777654 45677776664
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=6.1e-15 Score=152.34 Aligned_cols=374 Identities=12% Similarity=-0.025 Sum_probs=254.0
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCC-CcCHHhHHHHHHHHHhcCChhHHHHHHH
Q 006744 149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLC-KPDVFAYTAMIRVLAAERNLDACLRVWE 227 (632)
Q Consensus 149 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 227 (632)
......||.|...+...|++++|++.|+. |++++........ .....+|+.+...|...|++++|...|+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~k---------Al~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ 118 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRK---------AEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVD 118 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHH---------HHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHH---------HHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 44567899999999999999999988654 5556555433222 2356789999999999999999999998
Q ss_pred HHHhC-----C-CC-cCHHhHHHHHHHHHh--cCChhHHHHHHHHHHHcCCcccHHhHHHHHHH---HHhcCCHHHHHHH
Q 006744 228 EMKKD-----L-VE-ADVMAYVTLIMGLCK--GGRVVRGHELFREMKENGILIDRAIYGVLIEG---LVGEGKVGKACDL 295 (632)
Q Consensus 228 ~m~~~-----~-~~-p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~---~~~~g~~~~a~~~ 295 (632)
+..+. + .. ....++..+..++.. .+++++|++.|++..+.... +...+..+..+ +...++.++|++.
T Consensus 119 ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~ 197 (472)
T 4g1t_A 119 KVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDP 197 (472)
T ss_dssp HHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHH
T ss_pred HHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 87642 1 11 234566665555554 45799999999999887543 55555555544 4456788899999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744 296 LKDLVDSGYRADLGIYNSIIGGLCR----VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371 (632)
Q Consensus 296 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 371 (632)
+++..+.... +..++..+...+.. .|++++|.+++++...... .+...+..+...|...|++++|...+.+..+
T Consensus 198 ~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 198 LRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 9998876543 55666666555543 4678899999998887543 3566788899999999999999999999988
Q ss_pred CCCCccccHHHHHHHHhhh-------------------cccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHH
Q 006744 372 LKFSVAADLEKFFEFLVGK-------------------EERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKAL 432 (632)
Q Consensus 372 ~~~~~~~~~~~~l~~~~~~-------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 432 (632)
.... +...+..+..+|.. .+..+.|...|++..+..+.+..++..+...|...|++++|+
T Consensus 276 ~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 276 YIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp HSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred hCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHH
Confidence 7544 33344444444322 244678888999988887778888999999999999999999
Q ss_pred HHHHHHhhCCCCcCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 433 YLFGKMRGLNLEVNSL--SFSIAIQ-CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 433 ~~~~~m~~~~~~p~~~--t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
..|++.......+... .+..+.. .....|+.++|...|.+.++.. |+..... +..+.+.++++..+
T Consensus 355 ~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~l 423 (472)
T 4g1t_A 355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHHH
Confidence 9999998865333321 2222222 3456899999999999998854 4432222 22344555666665
Q ss_pred hcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006744 510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548 (632)
Q Consensus 510 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 548 (632)
...+ .+..+|..+...|...|++++|++.|++..+.|
T Consensus 424 ~~~p--~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 424 SKNG--ADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHCC---CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5432 345678889999999999999999999999875
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=2.1e-13 Score=148.06 Aligned_cols=386 Identities=13% Similarity=0.092 Sum_probs=271.0
Q ss_pred ChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHH
Q 006744 167 LFRAADQVPELMDSQGRIAEMLEILEKMRRNLC--KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL 244 (632)
Q Consensus 167 ~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 244 (632)
+.++.-...+.+...|.+.+|+++++++.-.+- .-+...-+.++....+. +..+..+..+++... + ..-+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 333333334444456777777777777763311 12334455566555555 445555555554421 1 2336
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH
Q 006744 245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF 324 (632)
Q Consensus 245 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 324 (632)
...+...|.+++|..+|++... .....+.++. ..|++++|.++.++.. +..+|..+..++.+.|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCH
Confidence 6777788889999998887521 2222233332 6778888888888652 577888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHH
Q 006744 325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL 404 (632)
Q Consensus 325 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 404 (632)
++|++.|.+. -|...|..++.+|.+.|+++++.+++....+... +..+...++.+|++.+++++......
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI~-- 1191 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN-- 1191 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHHh--
Confidence 9999999664 3667888899999999999999999988777652 33344458888999998886444431
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHh
Q 006744 405 KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484 (632)
Q Consensus 405 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 484 (632)
..+...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+
T Consensus 1192 ----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1192 ----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 124556777999999999999999999885 47899999999999999999999877 35678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006744 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC 564 (632)
Q Consensus 485 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 564 (632)
|..+..+|...|+++.|......+. .+...+..++..|.+.|.+++|+.+++...... +-....|+-|..+|+
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence 9989999999999999988765432 234456678889999999999999998888664 445557777777776
Q ss_pred hc--CCHHHHHHHHHHHHHCCCCCC-----CChhhHHHHHHHHhhhchhHHHHhhh
Q 006744 565 KH--GTLEEARKVFTNLRERKLLTE-----ANTIVYDEILIEHMKKKTADLVLSGL 613 (632)
Q Consensus 565 ~~--g~~~~A~~~~~~m~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~v~~~l 613 (632)
+. ++..++.++|. +++-.|. .....|..+..-|.+.++.+.+...|
T Consensus 1326 Ky~peklmEhlk~f~---~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred hCCHHHHHHHHHHHH---HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 54 55556666554 3333322 34556778888888888877666333
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.8e-15 Score=144.52 Aligned_cols=253 Identities=11% Similarity=0.042 Sum_probs=142.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHH
Q 006744 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD 325 (632)
Q Consensus 246 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 325 (632)
+-....|++..|+..++................+..+|...|+++.|+..++.. -.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 344556777888777766544322211234455667788888888777766441 2346667777777777778888
Q ss_pred HHHHHHHHHHhCCCCCCHh-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHH
Q 006744 326 KAYKLFEVTVQDDLAPDFS-TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL 404 (632)
Q Consensus 326 ~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 404 (632)
+|++.++++...+..|+.. .+..+...+...|++++|.+.+++ +.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~---------------------------- 128 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GD---------------------------- 128 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CC----------------------------
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CC----------------------------
Confidence 8888888777665545433 344444666667777776666655 12
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006744 405 KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF---SIAIQCHVESGDILEACECHNKIIEMSQVPS 481 (632)
Q Consensus 405 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~ 481 (632)
+...+..++..|.+.|++++|.+.|+++.+.. |+...+ ...+..+...|++++|..+|+++.+.. +.+
T Consensus 129 ------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~ 199 (291)
T 3mkr_A 129 ------SLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPT 199 (291)
T ss_dssp ------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCC
T ss_pred ------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCc
Confidence 44455555555555555555555555555432 332211 111122223355666666666665542 234
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhC
Q 006744 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK-IIEVLNEMTQE 547 (632)
Q Consensus 482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 547 (632)
...++.+..++.+.|++++|...|++++...+. +..++..++..+...|+.++ +.++++++.+.
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~--~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG--HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 555555666666666666666666665544322 23334445555555555543 44555555554
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=7.2e-14 Score=131.19 Aligned_cols=224 Identities=13% Similarity=0.025 Sum_probs=129.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--C----HhhHH
Q 006744 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA--D----LGIYN 312 (632)
Q Consensus 239 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~----~~~~~ 312 (632)
..|..+...+...|++++|.+.|+++.+.. .+..++..+..+|...|++++|.+.+++..+..... + ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344444555555555555555555555444 344455555555555555555555555544321110 1 23444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcc
Q 006744 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE 392 (632)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 392 (632)
.+...|.+ .|++++|...++++.+.... ...+.+.|
T Consensus 84 ~l~~~~~~-----------------------------------~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~ 119 (258)
T 3uq3_A 84 RIGNAYHK-----------------------------------LGDLKKTIEYYQKSLTEHRT---------ADILTKLR 119 (258)
T ss_dssp HHHHHHHH-----------------------------------TTCHHHHHHHHHHHHHHCCC---------HHHHHHHH
T ss_pred HHHHHHHH-----------------------------------cccHHHHHHHHHHHHhcCch---------hHHHHHHh
Confidence 44444444 44444444444444442211 12344556
Q ss_pred cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006744 393 RIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472 (632)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 472 (632)
++++|...++.+....+.+...|..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...+++
T Consensus 120 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66677777776666654466677777888888888888888888777643 33556666777777777777777777777
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006744 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510 (632)
Q Consensus 473 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 510 (632)
+++.. ..+...+..+..+|...|++++|...++++++
T Consensus 199 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 199 AIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 76643 22456666677777777777777777766553
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=1e-13 Score=141.37 Aligned_cols=346 Identities=12% Similarity=-0.013 Sum_probs=153.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCcccHHhHHHHHHHHHhc
Q 006744 210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV---VRGHELFREMKENGILIDRAIYGVLIEGLVGE 286 (632)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 286 (632)
...+.+.|++++|+++|++..+.| +...+..+...|...|+. ++|.++|++..+. +...+..|...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 334445555555555555554443 222233333333444444 5555555555432 333344444433333
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHH---HHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCC
Q 006744 287 G-----KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD---KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358 (632)
Q Consensus 287 g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 358 (632)
| +.++|+..|++..+.|.. ..+..|...|...+..+ ++.+.+......|. ......+...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCC
Confidence 3 445555555555554422 13444444444433322 23333333333222 2234444445555554
Q ss_pred hhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcc---cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc----CChhhH
Q 006744 359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE---RIMMALDVFEELKGKGYSSVPIYNILMGALLEI----GEVKKA 431 (632)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A 431 (632)
++++......+.+.-...++.....+..+|.+.| +.++|.+.|++..+.+..+...+..+...|... +++++|
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 4433333222222211122234445555555555 666666666666666555555445555555443 466666
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-----CHHHHHH
Q 006744 432 LYLFGKMRGLNLEVNSLSFSIAIQC-H--VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG-----EIDAAMM 503 (632)
Q Consensus 432 ~~~~~~m~~~~~~p~~~t~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~ 503 (632)
+..|++.. .| +...+..+... + ...++.++|.++|++..+.| +...+..|...|. .| ++++|++
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 66666655 22 22333333333 2 34566666666666666544 4445555555554 33 6666666
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 006744 504 LVRDCLGNVASGPTEFKYALTILHVCR----SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK----HGTLEEARKV 575 (632)
Q Consensus 504 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 575 (632)
.|++.. .-+...+..|...|.. ..+.++|+.+|++..+.|. ......|...|.. ..+.++|..+
T Consensus 309 ~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 309 HFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 666544 1223333334444443 2366666666666666552 2234444444442 3466666666
Q ss_pred HHHHHHCCC
Q 006744 576 FTNLRERKL 584 (632)
Q Consensus 576 ~~~m~~~~~ 584 (632)
|+...+.|.
T Consensus 381 ~~~A~~~g~ 389 (452)
T 3e4b_A 381 SQLAKAQDT 389 (452)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHCCC
Confidence 666666653
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.3e-13 Score=129.35 Aligned_cols=226 Identities=11% Similarity=0.013 Sum_probs=165.3
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcc--c----HHh
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI--D----RAI 275 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~----~~~ 275 (632)
....|..+...+...|++++|++.|++..+.. .+..+|..+..++...|++++|.+.+++..+..... + ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 45678899999999999999999999999876 788899999999999999999999999988753221 1 578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHh
Q 006744 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE 355 (632)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 355 (632)
+..+...|...|++++|...|+++.+.. |+. ..+.+.|++++|...++++...... +...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHH
Confidence 9999999999999999999999999853 342 4456667788888888887764311 23345555555666
Q ss_pred cCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHH
Q 006744 356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLF 435 (632)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 435 (632)
.|++++|...++++.+. .+.+..+|..+..+|...|++++|...|
T Consensus 152 ~~~~~~A~~~~~~a~~~-----------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKR-----------------------------------APEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp TTCHHHHHHHHHHHHHH-----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc-----------------------------------CcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 66666666665555543 3335556666666666677777777777
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475 (632)
Q Consensus 436 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 475 (632)
++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus 197 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 197 NKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6666543 33455666666666777777777777666655
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=7e-14 Score=127.39 Aligned_cols=198 Identities=20% Similarity=0.043 Sum_probs=100.1
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280 (632)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 280 (632)
++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+.... +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 344556666666666666666666666666543 334556666666666666666666666666665433 455566666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHH
Q 006744 281 EGLVGE-----------GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349 (632)
Q Consensus 281 ~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 349 (632)
.++.+. |++++|+..|++..+..+. +...|..+...|...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666655 5555555555555544332 34445555555555555555555555554443 234444444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 006744 350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVK 429 (632)
Q Consensus 350 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 429 (632)
..++...|++++|...++ +..+..+.+...+..+...+...|+++
T Consensus 158 a~~~~~~g~~~~A~~~~~-----------------------------------~al~~~P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYA-----------------------------------KALEQAPKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHHHHHTCHHHHHHHHH-----------------------------------HHHHHSTTCHHHHHHHHHHHTC-----
T ss_pred HHHHHHcCCHHHHHHHHH-----------------------------------HHHHhCCCChHHHHHHHHHHHHccCHH
Confidence 444444444444444444 444433345555666666666666666
Q ss_pred hHHHHHHHH
Q 006744 430 KALYLFGKM 438 (632)
Q Consensus 430 ~A~~~~~~m 438 (632)
+|...|++.
T Consensus 203 ~A~~~~~~~ 211 (217)
T 2pl2_A 203 EAARAAALE 211 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 666666544
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=1.2e-13 Score=140.96 Aligned_cols=373 Identities=10% Similarity=-0.015 Sum_probs=237.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC----
Q 006744 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL---DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG---- 252 (632)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---- 252 (632)
+.|++++|+.+|++..+.| +..++..|...|...|+. ++|.++|++..+. +...+..+...+...+
T Consensus 15 ~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCH
T ss_pred hCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCC
Confidence 3455666666666665544 334455566667777887 8999999988753 5566777777555555
Q ss_pred -ChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 006744 253 -RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK---ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328 (632)
Q Consensus 253 -~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 328 (632)
+.++|.+.|++..+.|.. ..+..|...|...+..++ +.+.+......| +...+..|...|...+.++++.
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 778999999999887643 367777777777665443 444555554444 3456677888888888665555
Q ss_pred HHHHHHHhCCCCCCHhcHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhc----ccHHHHHHHH
Q 006744 329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMG---RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE----ERIMMALDVF 401 (632)
Q Consensus 329 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~ 401 (632)
.....+.+.-...+...+..+...|...| +.++|...|++..+.|... ...+..+..+|... ++.++|.+.|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~-a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT-AQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 44333332212223347778888888899 8999999999999888542 33234556666544 7999999999
Q ss_pred HHHHhCCCCChhHHHHHHHH-H--HhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC-----CHHHHHHHHHHH
Q 006744 402 EELKGKGYSSVPIYNILMGA-L--LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG-----DILEACECHNKI 473 (632)
Q Consensus 402 ~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-----~~~~a~~~~~~~ 473 (632)
++.. .+ +...+..+... | ...+++++|+..|++..+.| +...+..+...|. .| +.++|.++|++.
T Consensus 241 ~~aa-~g--~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 241 EKIA-PG--YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHHG-GG--STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHHc-CC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 9988 33 77778888887 4 46899999999999999877 5666677777776 55 999999999988
Q ss_pred HHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 006744 474 IEMSQVPSVAAYNCLTKGLCK----IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR----SGEAEKIIEVLNEMT 545 (632)
Q Consensus 474 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~ 545 (632)
. . -+...+..|...|.. ..++++|...|++..+.. .++ ....|...|.. .++.++|..+|+...
T Consensus 314 a-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 314 V-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNS--ADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp T-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTT--HHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred h-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 7 3 366777778777776 349999999999987642 232 33345666653 358999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 546 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
+.|. ++.......+......++.++|.++.++.++.
T Consensus 386 ~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 386 AQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 9883 33333323333333445677787777776554
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=3e-13 Score=128.22 Aligned_cols=248 Identities=12% Similarity=0.062 Sum_probs=135.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HhcHHHHHHH
Q 006744 275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD--FSTVNPLLVC 352 (632)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~ 352 (632)
.+......+...|++++|+..|+++.+.... +...|..+...|...|++++|+..+++..+....++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3444555555666666666666666554332 333555555566666666666666665555221111 1113444444
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHH
Q 006744 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKAL 432 (632)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 432 (632)
+...|++ ++|.+.|++..+..+.+..+|..+...|...|++++|.
T Consensus 84 ~~~~~~~-----------------------------------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 84 LMKKGQD-----------------------------------SLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128 (272)
T ss_dssp HHHTTCH-----------------------------------HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccH-----------------------------------HHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHH
Confidence 4444444 44444444444444445566777777777777777777
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHh
Q 006744 433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE---IDAAMMLVRDCL 509 (632)
Q Consensus 433 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~ 509 (632)
..|++..+.. +.+...+..+...+...+++++|.+.|+++.+... .+...+..+..++...|+ +++|...+++++
T Consensus 129 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 129 QYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 7777776642 23344444444244444577777777777766431 235555666666666666 666766666665
Q ss_pred hcCCCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006744 510 GNVASGPT------EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS 561 (632)
Q Consensus 510 ~~~~~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 561 (632)
+.....|+ ...|..+...|...|++++|++.++++.+.. +.+...+..+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~ 263 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKM 263 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence 44322232 1345556666666666666666666666653 344444444433
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=1.3e-13 Score=125.53 Aligned_cols=198 Identities=14% Similarity=0.024 Sum_probs=143.1
Q ss_pred cccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 006744 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC 456 (632)
Q Consensus 377 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 456 (632)
+...+..+...+.+.|++++|...|++..+.++.+...|..+...+.+.|++++|+..|++..+.. +-+...+..+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 334455556666677777777777777777777777888888888888888888888888887753 3345667777777
Q ss_pred HHHc-----------CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 006744 457 HVES-----------GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI 525 (632)
Q Consensus 457 ~~~~-----------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 525 (632)
+... |++++|...+++.++... -+...+..+..+|...|++++|+..|+++++.. .+...+..+.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~la 158 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSALA 158 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHHH
Confidence 7777 899999999998887542 246778888888999999999999999988764 5566777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580 (632)
Q Consensus 526 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 580 (632)
..+...|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.|++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88889999999999999988874 5677888888999999999999998887653
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=5.8e-13 Score=131.45 Aligned_cols=217 Identities=10% Similarity=0.072 Sum_probs=148.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR-VVRGHELFREMKENGILIDRAIYGVLIE 281 (632)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~ 281 (632)
..+|+.+...+.+.|++++|++.|++.++.. +-+..+|+.+..++...|+ +++|++.|+++.+.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4567777778888888899999888888764 3467788888888888886 88899888888887655 7778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHh-cCChh
Q 006744 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE-MGRMD 360 (632)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~ 360 (632)
++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 888888888888888888887655 7788888888888888888888888888876543 56677777777777 45546
Q ss_pred HH-----HHHHHHHHHCCCCccccHHHHHHHHhhhcc--cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 006744 361 NF-----FKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGYSSVPIYNILMGALLEI 425 (632)
Q Consensus 361 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 425 (632)
+| ...+++.++.... +...+..+..++...| ++++|.+.+.++ +..+.+...+..+..+|.+.
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 65 3555555444322 2223333333333333 344444444444 33333444444444444443
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=6.5e-13 Score=125.86 Aligned_cols=236 Identities=12% Similarity=-0.003 Sum_probs=154.7
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHH
Q 006744 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD--LGIYNSII 315 (632)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li 315 (632)
...+......+...|++++|++.|+++.+.... +...+..+..+|...|++++|+..+++..+....++ ...|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 445667788899999999999999999987544 566899999999999999999999999998432222 33488999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHH
Q 006744 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM 395 (632)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 395 (632)
..|...|++++|+..|++..+.... +...+..+...+...|++++|...+++..+...
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------------------- 139 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT--------------------- 139 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC---------------------
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC---------------------
Confidence 9999999999999999999875432 445667777777777777777777766655422
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCC---HHHHHHHHHH
Q 006744 396 MALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD---ILEACECHNK 472 (632)
Q Consensus 396 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~ 472 (632)
.+..+|..+...+...+++++|...|+++.+.. +.+...+..+..++...|+ .++|...+++
T Consensus 140 --------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 140 --------------TDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp --------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred --------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 234444444422222235555555555554432 2223344444444444454 4445555555
Q ss_pred HHHCC-CCCC------HHhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744 473 IIEMS-QVPS------VAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 473 ~~~~~-~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 511 (632)
+.+.. ..|+ ..+|..+...|...|++++|.+.|+++++.
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44321 0111 235556666677777777777777776654
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=6.5e-12 Score=119.05 Aligned_cols=222 Identities=11% Similarity=-0.029 Sum_probs=141.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCcccHHhHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK----GGRVVRGHELFREMKENGILIDRAIYG 277 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~ 277 (632)
+..++..+...+...|++++|++.|++..+. -+..++..+...+.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5566777777788888888888888887763 345667777777777 888888888888887765 566777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhcHHHH
Q 006744 278 VLIEGLVG----EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR----VKQFDKAYKLFEVTVQDDLAPDFSTVNPL 349 (632)
Q Consensus 278 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 349 (632)
.+...|.. .++.++|+..|++..+.+ +...+..+...|.. .+++++|+.+|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777877 888888888888877764 56677777777777 788888888888777654 44455556
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhh----cccHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 006744 350 LVCCAE----MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK----EERIMMALDVFEELKGKGYSSVPIYNILMGA 421 (632)
Q Consensus 350 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 421 (632)
...|.. .+++++|...+++..+.+ +...+..+..+|.. .+++++|...|++..+.+ +...+..+...
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~ 227 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 666665 666666666666655543 12223333333433 444444444444444433 23334444444
Q ss_pred HHh----cCChhhHHHHHHHHhh
Q 006744 422 LLE----IGEVKKALYLFGKMRG 440 (632)
Q Consensus 422 ~~~----~g~~~~A~~~~~~m~~ 440 (632)
|.. .+++++|...|++..+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHH
Confidence 444 4444444444444443
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=1.7e-12 Score=121.45 Aligned_cols=132 Identities=11% Similarity=-0.011 Sum_probs=66.8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282 (632)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 282 (632)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+..++...|++++|.+.++++.+.... +..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 3445555555566666666666666555442 234455555555555555555555555555554322 34445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006744 283 LVGEGKVGKACDLLKDLVDSGYRA-DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336 (632)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (632)
|...|++++|.++|+++.+.+..| +...+..+...|.+.|++++|...|+++.+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555555554411112 233444444445555555555555544443
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=1.7e-12 Score=128.13 Aligned_cols=250 Identities=11% Similarity=0.007 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 006744 152 FASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN-LDACLRVWEEMK 230 (632)
Q Consensus 152 ~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 230 (632)
...|+.+..++.+.|++++|+..++...+ .. +-+..+|+.+...+...|+ +++|++.|++..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~----------------l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al 159 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE----------------LN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAII 159 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH----------------HC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH----------------hC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 45667777777777777666666555443 22 2368889999999999997 999999999999
Q ss_pred hCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 006744 231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI 310 (632)
Q Consensus 231 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 310 (632)
+.. +-+...|..+..++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..|+++++..+. +...
T Consensus 160 ~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a 236 (382)
T 2h6f_A 160 EEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSV 236 (382)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHH
T ss_pred HHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHH
Confidence 875 447889999999999999999999999999998665 7889999999999999999999999999998765 7889
Q ss_pred HHHHHHHHHc-cCCHHHH-----HHHHHHHHhCCCCCCHhcHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCccccHHH
Q 006744 311 YNSIIGGLCR-VKQFDKA-----YKLFEVTVQDDLAPDFSTVNPLLVCCAEMG--RMDNFFKLLAQMEKLKFSVAADLEK 382 (632)
Q Consensus 311 ~~~li~~~~~-~g~~~~A-----~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (632)
|+.+..++.+ .|..++| +..|++....... +...|..+...+...| ++++|.+.+..+ +. .+.+...+.
T Consensus 237 ~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~ 313 (382)
T 2h6f_A 237 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIA 313 (382)
T ss_dssp HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHH
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHH
Confidence 9999999999 6665777 5888888775433 5667888888888887 689999999887 33 233556677
Q ss_pred HHHHHhhhcc---------cHHHHHHHHHHH-HhCCCCChhHHHHHHHHHHh
Q 006744 383 FFEFLVGKEE---------RIMMALDVFEEL-KGKGYSSVPIYNILMGALLE 424 (632)
Q Consensus 383 ~l~~~~~~~g---------~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~ 424 (632)
.+..+|.+.| .+++|.++|+++ .+.++.....|..+...+..
T Consensus 314 ~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 314 FLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 7888887764 358999999999 77766677778877776654
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=3.9e-13 Score=127.57 Aligned_cols=248 Identities=11% Similarity=-0.076 Sum_probs=140.3
Q ss_pred CCHHHHHHHHHHHHhCCC---CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHH
Q 006744 182 GRIAEMLEILEKMRRNLC---KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258 (632)
Q Consensus 182 g~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 258 (632)
|++++|+..|+++.+... +.+..+|..+...+...|++++|++.|++..+.. +.+..+|..+..++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 455666666666655421 1235566667777777777777777777766653 335666777777777777777777
Q ss_pred HHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006744 259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338 (632)
Q Consensus 259 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 338 (632)
+.|+++.+.... +..++..+..+|.+.|++++|...|+++.+.. |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 777777665332 45666666677777777777777777766643 232333333344455566666666665555432
Q ss_pred CCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHH
Q 006744 339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL 418 (632)
Q Consensus 339 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 418 (632)
.++... ..++..+...++.++|...+....+...... ..+..+|..+
T Consensus 175 -~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~l 221 (275)
T 1xnf_A 175 -DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLA-------------------------------EHLSETNFYL 221 (275)
T ss_dssp -CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH-------------------------------HHHHHHHHHH
T ss_pred -CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhccccccc-------------------------------ccccHHHHHH
Confidence 112222 2244444444555555555544432211000 0024567777
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006744 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470 (632)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 470 (632)
...|...|++++|...|++..... |+. +.....++...|++++|.+.+
T Consensus 222 a~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 222 GKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 788888888888888888877643 422 222244566677777776665
No 50
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.54 E-value=1e-10 Score=123.22 Aligned_cols=417 Identities=9% Similarity=-0.016 Sum_probs=240.8
Q ss_pred CCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHhCC-CCcCHHh
Q 006744 165 NNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN---LDACLRVWEEMKKDL-VEADVMA 240 (632)
Q Consensus 165 ~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~~~~ 240 (632)
..+++.-.++++...+.+.++.+..+|+++... .+.....|...+..-.+.|+ ++.+.++|++..... ..|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 356666677777777778888888888888776 34467778888888778887 888888888887653 1377778
Q ss_pred HHHHHHHHHhcCCh--------hHHHHHHHHHHH-cCC-ccc-HHhHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 006744 241 YVTLIMGLCKGGRV--------VRGHELFREMKE-NGI-LID-RAIYGVLIEGLVG---------EGKVGKACDLLKDLV 300 (632)
Q Consensus 241 ~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~p~-~~~~~~li~~~~~---------~g~~~~a~~~~~~m~ 300 (632)
|...+.-..+.++. +...++|+.... .|. .++ ...|...+..... .++++.+..+|++++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 87777766665543 233466666544 455 443 4577777665432 334677788888877
Q ss_pred HCCCCCCHhhHHH---HHHHHHcc----------CCHHHHHHHHHHHHh--CCCC---CCH-------------------
Q 006744 301 DSGYRADLGIYNS---IIGGLCRV----------KQFDKAYKLFEVTVQ--DDLA---PDF------------------- 343 (632)
Q Consensus 301 ~~g~~~~~~~~~~---li~~~~~~----------g~~~~A~~~~~~m~~--~~~~---p~~------------------- 343 (632)
..-...-..+|.. +...+... .+++.|...+.++.. .++. |..
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 5311111233332 22221000 012233334433322 1221 110
Q ss_pred -hcHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHH-HHHHHHHhCCCCChhH
Q 006744 344 -STVNPLLVCCAEMG-------RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL-DVFEELKGKGYSSVPI 414 (632)
Q Consensus 344 -~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~ 414 (632)
..|...+.---..+ ..+.+..+|++.+.... ....++...+..+...|+.++|. ++|++.....+.+...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 11222222211111 01223455666555432 24445555555556667777775 7777777665556666
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCC---------CcC------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006744 415 YNILMGALLEIGEVKKALYLFGKMRGLNL---------EVN------------SLSFSIAIQCHVESGDILEACECHNKI 473 (632)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------~p~------------~~t~~~ll~~~~~~g~~~~a~~~~~~~ 473 (632)
|-..+...-+.|++++|..+|+.+..... .|+ ...|...+....+.|+.+.|..+|..+
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777777788877777765310 121 224666666666777777788888777
Q ss_pred HHCCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--
Q 006744 474 IEMSQVPSVAAYNCLTKGLCKI-GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP-- 550 (632)
Q Consensus 474 ~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-- 550 (632)
.+.........|...+..-.+. ++.+.|.++|+..++..+. +...|...+......|+.+.|..+|++.......
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~--~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT--DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 7641111223333333333333 3477788887777765433 2334445556556667777888888777766321
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 551 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 585 (632)
-....|..++.--.+.|+.+.+.++.+++.+.-..
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 13456777777777778777788888777777543
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=2.3e-12 Score=120.54 Aligned_cols=201 Identities=16% Similarity=0.109 Sum_probs=137.9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006744 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317 (632)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 317 (632)
...|..+...+...|++++|.+.|+++.+.... +..++..+...|...|++++|.+.|+++.+.... +...|..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 455666667777777777777777777665432 5666777777777777777777777777765433 56667777777
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCC-CHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHH
Q 006744 318 LCRVKQFDKAYKLFEVTVQDDLAP-DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396 (632)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 396 (632)
|...|++++|.++++++.+.+..| +...+..+...+...|++++|...++++.+.... +...+..+..+|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776632333 3345566667777777777777777777665432 34555666666777777777
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 006744 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441 (632)
Q Consensus 397 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 441 (632)
|...++.+.+..+.+...+..+...+...|++++|..+++++.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777777766666667777777777777777777777777664
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=1.2e-11 Score=117.28 Aligned_cols=223 Identities=13% Similarity=-0.013 Sum_probs=138.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 006744 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG----EGKVGKACDLLKDLVDSGYRADLGIYN 312 (632)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~ 312 (632)
+..++..+...+...|++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45566666777777777777777777776632 44566667777777 777777777777777664 556666
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCccccHHHHH
Q 006744 313 SIIGGLCR----VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE----MGRMDNFFKLLAQMEKLKFSVAADLEKFF 384 (632)
Q Consensus 313 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 384 (632)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----------- 144 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----------- 144 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----------
Confidence 67777777 777777777777776654 44555556666655 556666666665555543
Q ss_pred HHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHH-
Q 006744 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE----IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE- 459 (632)
Q Consensus 385 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~- 459 (632)
+...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 145 --------------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 145 --------------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHG 195 (273)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred --------------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 33445555555555 566666666666655543 33445555555666
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHhhc
Q 006744 460 ---SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK----IGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 460 ---~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~ 511 (632)
.+++++|.+.|++..+.+ +...+..+..+|.. .+++++|.+.|++..+.
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 666666666666666543 24455556666666 66666666666666544
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=5.5e-13 Score=126.52 Aligned_cols=247 Identities=11% Similarity=-0.085 Sum_probs=162.7
Q ss_pred hcCChhHHHHHHHHHHhCCC---CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHH
Q 006744 215 AERNLDACLRVWEEMKKDLV---EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291 (632)
Q Consensus 215 ~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 291 (632)
..|++++|++.|+++.+... +.+..++..+...+...|++++|.+.|+++.+.... +..+|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 45677888888888776531 113566777777778888888888888887776433 56777777777778888888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371 (632)
Q Consensus 292 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 371 (632)
|.+.|+++.+.... +..+|..+...|.+.|++++|...|+++.+.. |+.......+..+...
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~--------------- 157 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQK--------------- 157 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHh---------------
Confidence 88888777775433 55667777777777777777777777776542 3332222233333333
Q ss_pred CCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC---cCHH
Q 006744 372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE---VNSL 448 (632)
Q Consensus 372 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~~~ 448 (632)
|++++|...+++.......+...+. ++..+...++.++|...+.+....... -+..
T Consensus 158 --------------------~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (275)
T 1xnf_A 158 --------------------LDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSE 216 (275)
T ss_dssp --------------------HCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred --------------------cCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccH
Confidence 4455555555444443333333343 566667777788888888887654211 1146
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006744 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV 505 (632)
Q Consensus 449 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 505 (632)
.+..+...+...|++++|...|+++.+.. |+. +.....++...|++++|++.+
T Consensus 217 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 217 TNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 78888999999999999999999999854 422 233456777889999998876
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=3.5e-12 Score=116.79 Aligned_cols=168 Identities=9% Similarity=-0.079 Sum_probs=111.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 281 (632)
+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.... +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 45567777777777888888888887776653 335667777777777777777777777777765433 5666777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCCh
Q 006744 282 GLVGE-GKVGKACDLLKDLVDSGYRA-DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359 (632)
Q Consensus 282 ~~~~~-g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 359 (632)
.|... |++++|...++++.+.+..| +...|..+...+...|++++|+..++++.+.... +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 77777 77777777777777622222 2456666777777777777777777776654321 344555555666666666
Q ss_pred hHHHHHHHHHHHC
Q 006744 360 DNFFKLLAQMEKL 372 (632)
Q Consensus 360 ~~a~~~~~~~~~~ 372 (632)
++|...++++.+.
T Consensus 164 ~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 164 GDADYYFKKYQSR 176 (225)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666665555443
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=5.4e-13 Score=123.96 Aligned_cols=201 Identities=12% Similarity=0.083 Sum_probs=125.9
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280 (632)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 280 (632)
.....|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.... +..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 345567777778888888888888888887754 346777788888888888888888888888776433 667778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChh
Q 006744 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360 (632)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 360 (632)
..|...|++++|.+.++++.+.... +...+..+...+.+.|++++|..+++++.+... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888888776543 566777778888888888888888887776532 24455666666666666666
Q ss_pred HHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 006744 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440 (632)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 440 (632)
+|...++++.+.. +.+..+|..+..+|...|++++|...++++.+
T Consensus 177 ~A~~~~~~~~~~~-----------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQD-----------------------------------PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHC-----------------------------------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-----------------------------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 6666666655543 22444555556666666666666666666554
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=4.5e-12 Score=116.02 Aligned_cols=202 Identities=14% Similarity=0.091 Sum_probs=131.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006744 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316 (632)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 316 (632)
+...+..+...+...|++++|.+.|+++.+.... +...+..+...|...|++++|.+.++++.+.... +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 4566777777888888888888888887776433 5667777778888888888888888887775433 5667777777
Q ss_pred HHHcc-CCHHHHHHHHHHHHhCCCCCC-HhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccH
Q 006744 317 GLCRV-KQFDKAYKLFEVTVQDDLAPD-FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI 394 (632)
Q Consensus 317 ~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (632)
.|... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------- 143 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--------------------- 143 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------------
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------
Confidence 78888 888888888877776322232 3445555566666666666666666655433
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744 395 MMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474 (632)
Q Consensus 395 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 474 (632)
+.+...+..+...+...|++++|..+++++.+.....+...+..+...+...|+.+.+..+++.+.
T Consensus 144 --------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 144 --------------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp --------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 234455566666666666666666666666553211344455555555566666666666666665
Q ss_pred H
Q 006744 475 E 475 (632)
Q Consensus 475 ~ 475 (632)
+
T Consensus 210 ~ 210 (225)
T 2vq2_A 210 A 210 (225)
T ss_dssp H
T ss_pred H
Confidence 4
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.51 E-value=4.4e-10 Score=118.39 Aligned_cols=420 Identities=11% Similarity=0.050 Sum_probs=279.6
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHh------------------cCC---HHHHHHHHHHH
Q 006744 136 SKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS------------------QGR---IAEMLEILEKM 194 (632)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~------------------~g~---~~~a~~~~~~m 194 (632)
+..|+...... +.|...|..++..+.+.+.++.++.+|+.+.. .|. ++.+..+|++.
T Consensus 52 i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 52 IGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 33444444433 56888899999888888888888888887662 356 89999999999
Q ss_pred HhCC-CCcCHHhHHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CcC-HHhHHHHHHHHHh---------cCC
Q 006744 195 RRNL-CKPDVFAYTAMIRVLAAERNL--------DACLRVWEEMKK-DLV-EAD-VMAYVTLIMGLCK---------GGR 253 (632)
Q Consensus 195 ~~~~-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p~-~~~~~~li~~~~~---------~g~ 253 (632)
.... ..|++..|...+....+.++. +.+.++|+.... .|. .++ ...|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8864 247888999998877776654 334578876553 455 453 5678877765542 345
Q ss_pred hhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC-------------HHHHHHHHHHHHH--CCCC---CC--------
Q 006744 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK-------------VGKACDLLKDLVD--SGYR---AD-------- 307 (632)
Q Consensus 254 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-------------~~~a~~~~~~m~~--~g~~---~~-------- 307 (632)
++.+..+|++........-..+|......-...+. ++.|...+.++.. .++. |.
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 78889999998863222123344333222111111 2233344444332 1332 11
Q ss_pred ------------HhhHHHHHHHHHccC-------CHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHH-HHHH
Q 006744 308 ------------LGIYNSIIGGLCRVK-------QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF-KLLA 367 (632)
Q Consensus 308 ------------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~ 367 (632)
...|...+.---..+ ..+.+..+|++.+... .-+...|...+..+...|+.+.|. ++++
T Consensus 290 ~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~ 368 (679)
T 4e6h_A 290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLK 368 (679)
T ss_dssp TSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 134555554433332 1234567788877653 336667777778888889999996 9999
Q ss_pred HHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCC----------CC------------ChhHHHHHHHHHHhc
Q 006744 368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG----------YS------------SVPIYNILMGALLEI 425 (632)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------~~------------~~~~~~~li~~~~~~ 425 (632)
+..... +.+..++...+....+.|+++.|.++|+++.+.. .+ ...+|...+....+.
T Consensus 369 rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 369 LGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 998743 3355556667777888999999999999987631 11 234688888888889
Q ss_pred CChhhHHHHHHHHhhC-CCCcCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 006744 426 GEVKKALYLFGKMRGL-NLEVNSLSFSIAIQCHVES-GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503 (632)
Q Consensus 426 g~~~~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 503 (632)
|+.+.|..+|.+..+. + ......|...+..-.+. ++.+.|..+|+..++. ..-+...+...++.....|+.+.|..
T Consensus 448 ~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999876 2 12233343333222333 4589999999999986 33456677888888889999999999
Q ss_pred HHHHHhhcCCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006744 504 LVRDCLGNVASG-PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563 (632)
Q Consensus 504 ~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 563 (632)
+|+.++...... -....|...+.--...|+.+.+.++.+++.+. .|+......+++-|
T Consensus 526 lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 526 LFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 999988654321 23456777777778889999999999999987 34444444555444
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=5.3e-13 Score=134.99 Aligned_cols=282 Identities=15% Similarity=0.060 Sum_probs=183.5
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCC
Q 006744 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL----GIYNSIIGGLCRVKQFDKAYKLFEVTVQD----DL-APD 342 (632)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~ 342 (632)
....+..+...+...|++++|+..|+++.+.+.. +. ..|..+...|...|++++|+..+++..+. +. ...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3445566777888899999999999998886443 32 46778888888999999999998887643 11 112
Q ss_pred HhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 006744 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL 422 (632)
Q Consensus 343 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 422 (632)
...+..+...|...|++++|...+.++.+..... ++ ......++..+...|
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~--------------~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL---------------GD--------------RLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------------TC--------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh---------------hc--------------hHHHHHHHHHHHHHH
Confidence 3455666677777788888777777665421000 00 000233455566666
Q ss_pred HhcCC-----------------hhhHHHHHHHHhhC----CC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-
Q 006744 423 LEIGE-----------------VKKALYLFGKMRGL----NL-EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV- 479 (632)
Q Consensus 423 ~~~g~-----------------~~~A~~~~~~m~~~----~~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~- 479 (632)
...|+ +++|+..+++..+. +. .....++..+...+...|++++|...+++..+....
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 66666 66666665554331 11 112235666666777777777777777776653111
Q ss_pred CC----HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Q 006744 480 PS----VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG----PTEFKYALTILHVCRSGEAEKIIEVLNEMTQE---- 547 (632)
Q Consensus 480 p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---- 547 (632)
.+ ..++..+...|...|++++|...+++++...... .....+..+...+...|++++|+.++++..+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 11 2366777888888888888888888776432111 11345667778888888888888888877654
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 548 GC-PPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 548 g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
+. .....++..+..+|.+.|++++|.+++++..+..
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 11 1123477788889999999999999999987764
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=7.5e-13 Score=133.47 Aligned_cols=303 Identities=13% Similarity=0.058 Sum_probs=193.1
Q ss_pred CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC
Q 006744 235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID----RAIYGVLIEGLVGEGKVGKACDLLKDLVDS----GYRA 306 (632)
Q Consensus 235 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~ 306 (632)
......+......+...|++++|...|+++.+.+.. + ..++..+...|...|++++|...+++.... +..+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345566677778888888888888888888876433 2 356777888888888888888888876542 1111
Q ss_pred -CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC----HhcHHHHHHHHHhcCC--------------------hh
Q 006744 307 -DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA-PD----FSTVNPLLVCCAEMGR--------------------MD 360 (632)
Q Consensus 307 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~--------------------~~ 360 (632)
...++..+...|...|++++|...+++..+.... .+ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2446677777888888888888888776542100 11 2244555555555555 44
Q ss_pred HHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCC-C-ChhHHHHHHHHHHhcCChhhHHHHHHHH
Q 006744 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-S-SVPIYNILMGALLEIGEVKKALYLFGKM 438 (632)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 438 (632)
+|...+.+..+ ++.. .+. + ...++..+...|...|++++|...+++.
T Consensus 165 ~A~~~~~~al~----------------------------~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 165 AAVDFYEENLS----------------------------LVTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHHH----------------------------HHHH---TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------HHHh---ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 44444433322 1111 110 0 2446777778888888888888888776
Q ss_pred hhCCC-CcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744 439 RGLNL-EVN----SLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PS----VAAYNCLTKGLCKIGEIDAAMMLVRDC 508 (632)
Q Consensus 439 ~~~~~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 508 (632)
.+... .++ ..++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|...++++
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 54310 011 236677777888888888888888877643111 11 456777888888888888888888887
Q ss_pred hhcCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCH
Q 006744 509 LGNVASGPT----EFKYALTILHVCRSGEAEKIIEVLNEMTQE----GC-PPNEVICSAIISGMCKHGTL 569 (632)
Q Consensus 509 ~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~l~~~~~~~g~~ 569 (632)
+.......+ ...+..+...+...|++++|++.+++..+. +. .....++..+...+...|+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 643221111 345667778888888888888888876643 21 11234566677777766655
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=8.6e-13 Score=133.43 Aligned_cols=280 Identities=14% Similarity=0.071 Sum_probs=191.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC
Q 006744 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR----AIYGVLIEGLVGEGKVGKACDLLKDLVDS----GY-RAD 307 (632)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~ 307 (632)
....+..+...+...|++++|.+.|+++.+.+.. +. .++..+...|...|++++|...|++..+. +. ...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3445666778889999999999999999987543 33 57888999999999999999999998753 11 123
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHhcHHHHHHHHHhcCC-----------------hhHHHHH
Q 006744 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQD----DL-APDFSTVNPLLVCCAEMGR-----------------MDNFFKL 365 (632)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~-----------------~~~a~~~ 365 (632)
..++..+...|...|++++|...+++..+. +- .....++..+...|...|+ +++|...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 467888899999999999999999987653 11 1123355566667777777 5555555
Q ss_pred HHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 006744 366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE 444 (632)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 444 (632)
+.+..+ ++... .... ...++..+...|...|++++|...+++..+....
T Consensus 206 ~~~al~----------------------------~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 206 YQENLK----------------------------LMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHH----------------------------HHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----------------------------HHHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 444322 11111 0001 2346777777788888888888887776543100
Q ss_pred -cC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 006744 445 -VN----SLSFSIAIQCHVESGDILEACECHNKIIEMSQV-----PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514 (632)
Q Consensus 445 -p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 514 (632)
.+ ...+..+...|...|++++|...+++..+.... ....++..+...|...|++++|...+++++.....
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11 225667777788888888888888777653211 11456777888888888888888888887643211
Q ss_pred CC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744 515 GP----TEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547 (632)
Q Consensus 515 ~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 547 (632)
.. ....+..+...|...|++++|.+++++..+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 1335666788888889999999888887765
No 61
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=1.3e-12 Score=121.28 Aligned_cols=212 Identities=14% Similarity=0.058 Sum_probs=132.2
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006744 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316 (632)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 316 (632)
...+|..+...+...|++++|...|+++.+.... +...+..+...|...|++++|.+.|+++.+.... +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 3455666666677777777777777777665333 5666667777777777777777777777665432 5566666666
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHH
Q 006744 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396 (632)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 396 (632)
.|...|++++|.++++++.+... .+...+..+...+... |++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~-----------------------------------~~~~~ 143 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKL-----------------------------------EQPKL 143 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHT-----------------------------------SCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHh-----------------------------------ccHHH
Confidence 77777777777777766665432 1333444444444444 55555
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006744 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM 476 (632)
Q Consensus 397 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 476 (632)
|...++++.+..+.+...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 144 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 144 ALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 5555555544444467789999999999999999999999998764 456778899999999999999999999999986
Q ss_pred CCCCCHHhHHHH
Q 006744 477 SQVPSVAAYNCL 488 (632)
Q Consensus 477 ~~~p~~~~~~~l 488 (632)
.. -+...+..+
T Consensus 223 ~p-~~~~~~~~~ 233 (243)
T 2q7f_A 223 QP-DHMLALHAK 233 (243)
T ss_dssp CT-TCHHHHHHH
T ss_pred Cc-chHHHHHHH
Confidence 42 234444443
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=1.2e-12 Score=132.08 Aligned_cols=303 Identities=14% Similarity=0.009 Sum_probs=207.4
Q ss_pred CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCcc
Q 006744 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD----VMAYVTLIMGLCKGGRVVRGHELFREMKEN----GILI 271 (632)
Q Consensus 200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p 271 (632)
......+......+...|++++|...|++..+.+ +.+ ...|..+...+...|++++|...+++..+. +-.+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4566778888899999999999999999998864 223 357888999999999999999999987653 2222
Q ss_pred -cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHccCC--------------------HH
Q 006744 272 -DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR-AD----LGIYNSIIGGLCRVKQ--------------------FD 325 (632)
Q Consensus 272 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~ 325 (632)
...++..+...|...|++++|...+++..+.... .+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 3567888999999999999999999988753110 11 4478888899999999 99
Q ss_pred HHHHHHHHHHhC----CCCC-CHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHH
Q 006744 326 KAYKLFEVTVQD----DLAP-DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400 (632)
Q Consensus 326 ~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 400 (632)
+|...+++..+. +..+ ...++..+...+...|++++|...+++..+...
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------------------------- 218 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-------------------------- 218 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH--------------------------
Confidence 999888876542 1111 122445555666666666666666655543210
Q ss_pred HHHHHhCCCC--ChhHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006744 401 FEELKGKGYS--SVPIYNILMGALLEIGEVKKALYLFGKMRGL----NLEV-NSLSFSIAIQCHVESGDILEACECHNKI 473 (632)
Q Consensus 401 ~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 473 (632)
..+.. ...+|..+...|...|++++|...+++.... +..+ ...++..+...+...|++++|...+++.
T Consensus 219 -----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 219 -----EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp -----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 00000 1336777888888888888888888877542 1111 1456777778888889999998888887
Q ss_pred HHCCCC-CC----HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCC-hHHHHHHHHHHHHHcCCH
Q 006744 474 IEMSQV-PS----VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV---ASGP-TEFKYALTILHVCRSGEA 534 (632)
Q Consensus 474 ~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~ 534 (632)
.+.... .+ ..++..+...|...|++++|...+++.++.. +..+ ...++..+...+...|+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 753111 11 5567788888999999999999998876431 1111 123344455555555543
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=1.8e-12 Score=126.75 Aligned_cols=96 Identities=20% Similarity=0.187 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCccc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHhh
Q 006744 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILID----RAIYGVLIEGLVGEGKVGKACDLLKDLVDS----GYR-ADLGI 310 (632)
Q Consensus 240 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~ 310 (632)
.+......+...|++++|...|+++.+.... + ...+..+...|...|++++|.+.+++..+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444556666777777777777777665322 2 345666667777777777777777665432 111 12345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 006744 311 YNSIIGGLCRVKQFDKAYKLFEVTVQ 336 (632)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (632)
+..+...|...|++++|...+++..+
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~ 111 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLD 111 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55566666666666666666665543
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=1.4e-12 Score=127.46 Aligned_cols=281 Identities=13% Similarity=0.073 Sum_probs=176.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CH
Q 006744 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD----LGIYNSIIGGLCRVKQFDKAYKLFEVTVQD----DLAP-DF 343 (632)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~ 343 (632)
...+......+...|++++|...|+++.+.... + ...+..+...|...|++++|...+++..+. +..+ ..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 334555667788889999999999888876433 3 356777888888888999998888876542 1111 13
Q ss_pred hcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 006744 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALL 423 (632)
Q Consensus 344 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 423 (632)
..+..+...+...|++++|...+.+..+......... ....++..+...|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------------------------~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-----------------------------GEARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-----------------------------HHHHHHHHHHHHHH
Confidence 3455666677777777777777766544211100000 01224555555555
Q ss_pred hcCC--------------------hhhHHHHHHHHhhC----CCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006744 424 EIGE--------------------VKKALYLFGKMRGL----NLE-VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478 (632)
Q Consensus 424 ~~g~--------------------~~~A~~~~~~m~~~----~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 478 (632)
..|+ +++|...+++.... +.. .....+..+...+...|++++|...+++..+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5555 55665555554321 111 1123455666667777777777777776664211
Q ss_pred C-C----CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Q 006744 479 V-P----SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT----EFKYALTILHVCRSGEAEKIIEVLNEMTQE-- 547 (632)
Q Consensus 479 ~-p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-- 547 (632)
. . ...++..+...+...|++++|...+++.+.......+ ...+..+...+...|++++|...++++.+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 0 1 1336677777788888888888888876643211111 345666777788888888888888877653
Q ss_pred --CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 548 --GC-PPNEVICSAIISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 548 --g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
+. .....++..+..+|.+.|++++|.+++++..+..
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 11 1114467788889999999999999999987753
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=1.1e-11 Score=123.79 Aligned_cols=239 Identities=11% Similarity=0.045 Sum_probs=151.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHh
Q 006744 314 IIGGLCRVKQFDKAYKLFEVTVQDDL-APD----FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV 388 (632)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (632)
....+...|++++|+..|++..+.-. .++ ..++..+...|...|++++|...+.+..+.....
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------------ 176 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH------------ 176 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC------------
Confidence 44556677777777777777664310 111 2355666667777777777777666654321000
Q ss_pred hhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCc-CHHHHHHHHHHHHHcCCH
Q 006744 389 GKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL----NLEV-NSLSFSIAIQCHVESGDI 463 (632)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~g~~ 463 (632)
++. ......+++.+...|...|++++|...|++..+. +-.+ ...++..+...|...|++
T Consensus 177 ---~~~-------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 177 ---EAY-------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp ---STT-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ---ccc-------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence 000 0002345777777777788888888777776543 1011 123667777788888888
Q ss_pred HHHHHHHHHHHHC----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CC-hHHHHHHHHHHHHHcCC--
Q 006744 464 LEACECHNKIIEM----SQ-VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS--GP-TEFKYALTILHVCRSGE-- 533 (632)
Q Consensus 464 ~~a~~~~~~~~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~-- 533 (632)
++|...+++..+. +. .....++..+...|.+.|++++|...+++.++.... .+ ....+..+...+...|+
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 320 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE 320 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHH
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 8888888877762 22 223566778888888888888888888887643211 11 12234556666777788
Q ss_pred -HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 534 -AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 534 -~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
+++|+.++++... .+.....+..+...|...|++++|.+++++..+.
T Consensus 321 ~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 321 AIQGFFDFLESKML--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7777777776521 1223446778889999999999999999988664
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=9.5e-11 Score=113.05 Aligned_cols=183 Identities=8% Similarity=0.013 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-h-cHHHHHHHHHhcCChhHHHHHH
Q 006744 290 GKACDLLKDLVD-SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF-S-TVNPLLVCCAEMGRMDNFFKLL 366 (632)
Q Consensus 290 ~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~ 366 (632)
++|..+|++..+ .... +...|..++..+.+.|++++|..+|++..+. .|+. . .|..+...+.+.|++++|..+|
T Consensus 81 ~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 81 DEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 445555555444 1211 3334444555555555555555555554442 2221 1 3444444444444444444444
Q ss_pred HHHHHCCCCccccHHHHHHHH-hhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CC
Q 006744 367 AQMEKLKFSVAADLEKFFEFL-VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN-LE 444 (632)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~ 444 (632)
++..+.... ...++.....+ +...|+.++|..+|++..+..+.+...|..++..+.+.|++++|..+|++..... +.
T Consensus 158 ~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 444443221 11111111111 1123555666666665555444456666666666666677777777776666642 23
Q ss_pred c--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006744 445 V--NSLSFSIAIQCHVESGDILEACECHNKIIEM 476 (632)
Q Consensus 445 p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 476 (632)
| ....|..++....+.|+.+.|..+++++.+.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 2344555555555566666666666665553
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=3.2e-11 Score=120.57 Aligned_cols=234 Identities=11% Similarity=0.002 Sum_probs=137.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc----CCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCCHhhHH
Q 006744 244 LIMGLCKGGRVVRGHELFREMKEN----GILI-DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG--Y----RADLGIYN 312 (632)
Q Consensus 244 li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~----~~~~~~~~ 312 (632)
....+...|++++|.+.|++..+. +-.+ ...++..+...|...|++++|...+++..+.- . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667778888888888887663 1111 34567777888888888888888887776531 1 01134667
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCC-CC----HhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHH
Q 006744 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLA-PD----FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387 (632)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (632)
.+...|...|++++|+..|++..+.... .+ ..++..+..+|...|++++|...+++..+..
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-------------- 254 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF-------------- 254 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
Confidence 7777788888888888877776542100 11 1245555666666666666666666554410
Q ss_pred hhhcccHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC----CCcCHHHHHHHHHHHHHcCC
Q 006744 388 VGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN----LEVNSLSFSIAIQCHVESGD 462 (632)
Q Consensus 388 ~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~t~~~ll~~~~~~g~ 462 (632)
+.. .. +....++..+...|.+.|++++|...+++..+.. -+.....+..+...+...|+
T Consensus 255 --------------~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 255 --------------EES--NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp --------------HHT--TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred --------------Hhh--ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 000 11 1134456666666666666666666666654321 11112234455556666666
Q ss_pred ---HHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006744 463 ---ILEACECHNKIIEMSQVPS-VAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510 (632)
Q Consensus 463 ---~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 510 (632)
+++|..++++. +..++ ...+..+...|...|++++|...|+++++
T Consensus 319 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 319 EEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555555544 22222 34566677777777777777777777653
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=2.4e-10 Score=110.21 Aligned_cols=219 Identities=11% Similarity=0.035 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc-------cCCH-------HHHHHHHHHHHhCCCCC-CHhcHHHHHHHHH
Q 006744 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCR-------VKQF-------DKAYKLFEVTVQDDLAP-DFSTVNPLLVCCA 354 (632)
Q Consensus 290 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~ 354 (632)
++|..+|++.....+. +...|..++..+.. .|++ ++|..+|++..+. +.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 5667777777765333 56667666666543 4664 7777777777652 123 3345666666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCChhhHHH
Q 006744 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKKALY 433 (632)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~ 433 (632)
..|++++|..+|+++.+... .+.. +|..++..+.+.|++++|..
T Consensus 111 ~~~~~~~A~~~~~~al~~~p-----------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~ 155 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIED-----------------------------------IDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSS-----------------------------------SCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccc-----------------------------------cCccHHHHHHHHHHHHhcCHHHHHH
Confidence 66777777666666665432 2222 44444444445555555555
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006744 434 LFGKMRGLNLEVNSLSFSIAIQCHV-ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512 (632)
Q Consensus 434 ~~~~m~~~~~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 512 (632)
+|++..+.. +.+...|........ ..|+.++|..+|++.++... -+...|..++..+.+.|++++|..+|++++...
T Consensus 156 ~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 156 IFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 555544432 122222222211111 13555555555555554321 134455555555555555555555555555432
Q ss_pred CCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744 513 ASGP--TEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547 (632)
Q Consensus 513 ~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 547 (632)
...| ....|..++......|+.+.|..+++++.+.
T Consensus 234 ~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2222 2334444455555555555555555555543
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=4.9e-11 Score=105.35 Aligned_cols=165 Identities=13% Similarity=0.018 Sum_probs=82.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHH
Q 006744 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC 352 (632)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 352 (632)
..+|..+...|.+.|++++|++.|++..+..+. +..+|..+...|.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 344555555555555555555555555544332 4445555555555555555555555554443221 23333334444
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHH
Q 006744 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKAL 432 (632)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 432 (632)
+...++++.+...+.+..+.... +......+..+|.+.|++++|++.|++..+.++.+..+|..+..+|.+.|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 44445555554444444433221 22233333444444455555555555554444445566666666666666666666
Q ss_pred HHHHHHhh
Q 006744 433 YLFGKMRG 440 (632)
Q Consensus 433 ~~~~~m~~ 440 (632)
..|++..+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666655
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=3.8e-12 Score=123.08 Aligned_cols=246 Identities=9% Similarity=-0.028 Sum_probs=160.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc------C
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKD-------LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN------G 268 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~ 268 (632)
+..++..+...+...|++++|..+|+++.+. .......++..+...+...|++++|.+.+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4667888889999999999999999988763 22334567888889999999999999999988764 2
Q ss_pred -CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC---
Q 006744 269 -ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS------GY-RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD--- 337 (632)
Q Consensus 269 -~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 337 (632)
......++..+...|...|++++|...|+++.+. +. .....++..+...|...|++++|+.+|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2224567888899999999999999999988764 21 123456788888999999999999999888754
Q ss_pred ---CCCC-CHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCC-------CccccHHHHHHHHhhhcccHHHHHHHHHHHHh
Q 006744 338 ---DLAP-DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF-------SVAADLEKFFEFLVGKEERIMMALDVFEELKG 406 (632)
Q Consensus 338 ---~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 406 (632)
+..| ...++..+...+...|++++|...++++.+... .+.......
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------------- 242 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM----------------------- 242 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-----------------------
Confidence 1122 234567777888888999999888888765311 000000000
Q ss_pred CCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744 407 KGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475 (632)
Q Consensus 407 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 475 (632)
....+..+...+...+.+.+|...+....... +.+..++..+..+|...|++++|.++|++.++
T Consensus 243 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 ----HAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----HHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12223334444455566666666666555432 33445566666677777777777777776654
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.37 E-value=1.1e-10 Score=102.95 Aligned_cols=168 Identities=13% Similarity=0.063 Sum_probs=137.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 281 (632)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..++...|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 56778888999999999999999999888764 446778888888999999999999999888876544 6777788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH
Q 006744 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361 (632)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 361 (632)
.+...++++.|...+++....... +...+..+...|.+.|++++|++.|++..+.... +..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 888899999999999888876554 6778888888899999999999999888876432 56677888888888888888
Q ss_pred HHHHHHHHHHCC
Q 006744 362 FFKLLAQMEKLK 373 (632)
Q Consensus 362 a~~~~~~~~~~~ 373 (632)
|.+.|++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 888888877653
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=1.9e-11 Score=125.32 Aligned_cols=184 Identities=13% Similarity=-0.009 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHH
Q 006744 183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL-DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261 (632)
Q Consensus 183 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 261 (632)
.+++++..+++..... +.+...|..+...+...|++ ++|++.|++..+.. +-+...|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4566666666555432 23566666666666666676 67777766666543 234566666666666666666666666
Q ss_pred HHHHHcCCcccHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc--------CCH
Q 006744 262 REMKENGILIDRAIYGVLIEGLVGE---------GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV--------KQF 324 (632)
Q Consensus 262 ~~m~~~~~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~ 324 (632)
++..+.. |+...+..+...|... |++++|++.|++..+.... +...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 6666543 3455666666666666 6666666666666655433 455566666666555 556
Q ss_pred HHHHHHHHHHHhCCCC--CCHhcHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744 325 DKAYKLFEVTVQDDLA--PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK 371 (632)
Q Consensus 325 ~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 371 (632)
++|+..|++..+.... -+...|..+..+|...|++++|.+.|++..+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666665555543210 1334444444444444444444444444443
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.36 E-value=2.7e-11 Score=124.29 Aligned_cols=199 Identities=9% Similarity=-0.086 Sum_probs=156.9
Q ss_pred cccHHHHHHHHhhhcccH-HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHH
Q 006744 377 AADLEKFFEFLVGKEERI-MMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455 (632)
Q Consensus 377 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 455 (632)
....+..+..+|...|++ ++|++.|++..+..+.+..+|..+..+|...|++++|...|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 444555555666667777 77777777777666667888999999999999999999999998875 477778888888
Q ss_pred HHHHc---------CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc--------CCHHHHHHHHHHHhhcCCC-CCh
Q 006744 456 CHVES---------GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI--------GEIDAAMMLVRDCLGNVAS-GPT 517 (632)
Q Consensus 456 ~~~~~---------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~-~p~ 517 (632)
.+... |++++|.+.|+++++... -+...|..+..+|... |++++|++.|+++++..+. .-+
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 88888 999999999999888642 3577888888888888 8899999999998865220 025
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579 (632)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 579 (632)
...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+.++
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6677888899999999999999999988874 556778888889999999998888765443
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=4.6e-11 Score=115.35 Aligned_cols=239 Identities=13% Similarity=0.058 Sum_probs=168.2
Q ss_pred HhcHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhC------C-
Q 006744 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKL-------KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK------G- 408 (632)
Q Consensus 343 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~- 408 (632)
..++..+...+...|++++|..+++++.+. ........+..+..+|...|++++|...+++.... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456778888999999999999999998774 23334556777888889999999999999987654 1
Q ss_pred CC-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhC------CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----
Q 006744 409 YS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL------NLEV-NSLSFSIAIQCHVESGDILEACECHNKIIEM---- 476 (632)
Q Consensus 409 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---- 476 (632)
.+ ...++..+...|...|++++|...++++.+. +..| ....+..+...+...|++++|.++++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 12 5678889999999999999999999988764 2222 3456777888899999999999999998874
Q ss_pred --CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCCCh-------HHHHHHHHHHHHHcCCHHHHHHH
Q 006744 477 --SQVP-SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV------ASGPT-------EFKYALTILHVCRSGEAEKIIEV 540 (632)
Q Consensus 477 --~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~ 540 (632)
+..| ...++..+..+|...|++++|.+.++++++.. ...+. ...+..+...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 2122 25567888899999999999999999987531 00111 11112222233344566666667
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 541 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
++...... +.+..++..+..+|.+.|++++|.++|++..+.
T Consensus 267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 76666542 445678899999999999999999999988764
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=2.3e-10 Score=114.03 Aligned_cols=315 Identities=12% Similarity=0.015 Sum_probs=179.2
Q ss_pred cCHHhHHHHHHHH--HhcCChhHHHHHHHHHHHc--CC--cccHHhHHHHHHH--HHhcCCHHHHH---------HHHHH
Q 006744 236 ADVMAYVTLIMGL--CKGGRVVRGHELFREMKEN--GI--LIDRAIYGVLIEG--LVGEGKVGKAC---------DLLKD 298 (632)
Q Consensus 236 p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~--~~--~p~~~~~~~li~~--~~~~g~~~~a~---------~~~~~ 298 (632)
|+...-+.+-.-| ...+++++|.++++++.+. .+ ..+...|-.|+.. ..-.+..+.+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4444444444444 6778888888888877552 11 1223333444332 11112222222 44444
Q ss_pred HHHCCCCCCH----hhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HhcHHHHHHHHHhcCChhHHHHHHHHH
Q 006744 299 LVDSGYRADL----GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL-APD----FSTVNPLLVCCAEMGRMDNFFKLLAQM 369 (632)
Q Consensus 299 m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~ 369 (632)
+.......+. ..|......+...|++++|+..|++..+... .++ ..++..+...|...|+++.|...+.+.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4321100010 0122233444566666666666666654310 111 223444555555566666655555554
Q ss_pred HHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCC-
Q 006744 370 EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL----NLE- 444 (632)
Q Consensus 370 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~- 444 (632)
.+..... ++ .......+++.+...|...|++++|...|++..+. +-.
T Consensus 168 l~~~~~~---------------~~-------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 219 (378)
T 3q15_A 168 LDIYQNH---------------PL-------------YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR 219 (378)
T ss_dssp HHHHHTS---------------TT-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhC---------------CC-------------chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3321000 00 00002446777888888888888888888776552 111
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---CC
Q 006744 445 VNSLSFSIAIQCHVESGDILEACECHNKIIE-----MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS---GP 516 (632)
Q Consensus 445 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~p 516 (632)
....++..+..+|...|++++|.+.+++..+ ... ....++..+...|.+.|++++|...+++.++.... ..
T Consensus 220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 298 (378)
T 3q15_A 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298 (378)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 1234567777788888898888888888876 322 23667788888899999999999999988764332 22
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 517 TEFKYALTILHVCRSGE---AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 517 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 581 (632)
....+..+...+...++ +.+|+.++++.. ..+.....+..+...|...|++++|.+.|++..+
T Consensus 299 ~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 299 YKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23345555555666677 777777777621 1122334667888899999999999999988765
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=1e-09 Score=109.13 Aligned_cols=276 Identities=12% Similarity=-0.005 Sum_probs=150.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCH----hcH
Q 006744 276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG----IYNSIIGGLCRVKQFDKAYKLFEVTVQDDL-APDF----STV 346 (632)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~----~~~ 346 (632)
...+...+...|++++|...+++........+.. +++.+...+...|++++|...+++...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344455667778888888877776653222221 445556667777777777777776654211 0111 123
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCC---C-ChhHHHHHHHHH
Q 006744 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY---S-SVPIYNILMGAL 422 (632)
Q Consensus 347 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~-~~~~~~~li~~~ 422 (632)
..+...+...|++++|...+++..+... ..+. + ....+..+...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~~~la~~~ 145 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLIN-------------------------------EQHLEQLPMHEFLVRIRAQLL 145 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HTTCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhccccCcHHHHHHHHHHHHH
Confidence 3444555566666666666655443210 0010 1 223455566666
Q ss_pred HhcCChhhHHHHHHHHhhCCCC--c--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHhHH----HHHHHH
Q 006744 423 LEIGEVKKALYLFGKMRGLNLE--V--NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS--VAAYN----CLTKGL 492 (632)
Q Consensus 423 ~~~g~~~~A~~~~~~m~~~~~~--p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~----~li~~~ 492 (632)
...|++++|...+++.....-. + ...++..+...+...|++++|...+++..+....++ ..... ..+..+
T Consensus 146 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T 1hz4_A 146 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 6667777777766665442111 1 123455566666677777777777776654311111 11111 222335
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHh
Q 006744 493 CKIGEIDAAMMLVRDCLGNVASGP--TEFKYALTILHVCRSGEAEKIIEVLNEMTQE----GCPPNE-VICSAIISGMCK 565 (632)
Q Consensus 493 ~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~ 565 (632)
...|++++|...+++........+ ....+..+...+...|++++|...+++.... |..++. .++..+..++..
T Consensus 226 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 677777777777777654321111 1223455666677777777777777766432 222222 255566677777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 006744 566 HGTLEEARKVFTNLRER 582 (632)
Q Consensus 566 ~g~~~~A~~~~~~m~~~ 582 (632)
.|+.++|...+++..+.
T Consensus 306 ~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 306 AGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHH
Confidence 88888888777776543
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=4.3e-10 Score=111.99 Aligned_cols=312 Identities=9% Similarity=-0.029 Sum_probs=175.0
Q ss_pred cCHHhHHHHHHHH--HhcCChhHHHHHHHHHHhCC--CCcC--HHhHHHHHHH--HHhcCChhHHH---------HHHHH
Q 006744 201 PDVFAYTAMIRVL--AAERNLDACLRVWEEMKKDL--VEAD--VMAYVTLIMG--LCKGGRVVRGH---------ELFRE 263 (632)
Q Consensus 201 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~--~~p~--~~~~~~li~~--~~~~g~~~~a~---------~~~~~ 263 (632)
|+..+-+.|-..| .+.+++++|.++++++.+.. ++.| ...|-.++.. ....+.+..+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 3444444444444 67778888888887765421 2222 2233333322 11112333333 55555
Q ss_pred HHHcCCccc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C----CHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006744 264 MKENGILID----RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR-A----DLGIYNSIIGGLCRVKQFDKAYKLFEVT 334 (632)
Q Consensus 264 m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m 334 (632)
+.......+ ...+......+...|++++|...|++..+.... + ...++..+...|...|++++|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 543211111 112334455667889999999999888754111 1 2446777888889999999999888877
Q ss_pred HhCC----C-CC-CHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCC
Q 006744 335 VQDD----L-AP-DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG 408 (632)
Q Consensus 335 ~~~~----~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 408 (632)
.+.. . .+ ...++..+..+|...|++++|...+.+..+.... .++..
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~---------------~~~~~------------- 219 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD---------------IQNDR------------- 219 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------TTCHH-------------
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH---------------cCCHH-------------
Confidence 6421 1 11 1345666777788888888888877766542100 00000
Q ss_pred CCChhHHHHHHHHHHhcCChhhHHHHHHHHhh-----CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---C
Q 006744 409 YSSVPIYNILMGALLEIGEVKKALYLFGKMRG-----LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV---P 480 (632)
Q Consensus 409 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---p 480 (632)
....+++.+..+|...|++++|...|++... .. +....++..+...+.+.|++++|...+++..+.... +
T Consensus 220 -~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 297 (378)
T 3q15_A 220 -FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK 297 (378)
T ss_dssp -HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCS
T ss_pred -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 0233466666666667777777666666654 22 222455666666777777777777777766653211 1
Q ss_pred -CHHhHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744 481 -SVAAYNCLTKGLCKIGE---IDAAMMLVRDCLGNVASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQ 546 (632)
Q Consensus 481 -~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 546 (632)
....+..+...|...|+ +++|+..+++. ...++ ...+..+...|...|++++|.+.|++..+
T Consensus 298 ~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 298 FYKELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 13334555555556666 66676666652 11222 23445567777777777777777777654
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=2.4e-09 Score=106.38 Aligned_cols=275 Identities=13% Similarity=0.018 Sum_probs=152.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH----HhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCc-ccHHhHH
Q 006744 207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADV----MAYVTLIMGLCKGGRVVRGHELFREMKEN----GIL-IDRAIYG 277 (632)
Q Consensus 207 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~ 277 (632)
......+...|++++|...+++.....-..+. .+++.+...+...|++++|.+.+++..+. |.. ....++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33444566788888888888887665311222 24556667777788888888888876652 111 0123356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC----CHhcH
Q 006744 278 VLIEGLVGEGKVGKACDLLKDLVDS----GYR--A-DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP----DFSTV 346 (632)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~ 346 (632)
.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........ ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6677788888888888888777643 111 1 23455667777788888888888888776532211 12345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcccc-HHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 006744 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD-LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEI 425 (632)
Q Consensus 347 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 425 (632)
..+...+...|++++|...+++........... ..... .....+..+...
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~ 228 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN-----------------------------ANKVRVIYWQMT 228 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH-----------------------------HHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH-----------------------------HHHHHHHHHHHC
Confidence 555566667777777777776654431111100 00000 001122334455
Q ss_pred CChhhHHHHHHHHhhCCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HhHHHHHHHHHhcCC
Q 006744 426 GEVKKALYLFGKMRGLNLEV---NSLSFSIAIQCHVESGDILEACECHNKIIEM----SQVPSV-AAYNCLTKGLCKIGE 497 (632)
Q Consensus 426 g~~~~A~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~g~ 497 (632)
|++++|...+++.......+ ....+..+...+...|++++|...++...+. +..++. ..+..+..++...|+
T Consensus 229 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 308 (373)
T 1hz4_A 229 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308 (373)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCC
Confidence 55555555555554332111 1123444555566666666666666555432 111121 244555666667777
Q ss_pred HHHHHHHHHHHhh
Q 006744 498 IDAAMMLVRDCLG 510 (632)
Q Consensus 498 ~~~A~~~~~~~~~ 510 (632)
.++|...+++.+.
T Consensus 309 ~~~A~~~l~~al~ 321 (373)
T 1hz4_A 309 KSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776654
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=8.9e-11 Score=111.50 Aligned_cols=165 Identities=12% Similarity=-0.007 Sum_probs=124.4
Q ss_pred HhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-C
Q 006744 163 SRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD------LV-E 235 (632)
Q Consensus 163 ~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~ 235 (632)
...|++++|+.+++ +|+++++++.....+....++..+...|...|++++|++.|++..+. +- +
T Consensus 12 ~~~~~~~~A~~~~~---------~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (283)
T 3edt_B 12 SGLVPRGSAVPLCK---------QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP 82 (283)
T ss_dssp -CCSCSSSHHHHHH---------HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred CCCCCHHHHHHHHH---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch
Confidence 45677888877754 46667777765443445778899999999999999999999988754 21 2
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc------C-CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------
Q 006744 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKEN------G-ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS------ 302 (632)
Q Consensus 236 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------ 302 (632)
....++..+..++...|++++|.+.|++..+. . ......++..+...|...|++++|...|++..+.
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 24567888999999999999999999988764 1 1224667888888999999999999999888764
Q ss_pred CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006744 303 GYRA-DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336 (632)
Q Consensus 303 g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (632)
+..| ...++..+...|...|++++|..++++..+
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 345777888888888888888888887765
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=1.1e-09 Score=96.45 Aligned_cols=168 Identities=14% Similarity=0.033 Sum_probs=135.1
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 006744 412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG 491 (632)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 491 (632)
...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. ..+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3457777888888888888888888887653 3466777888888888888988888888888754 2356778888888
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006744 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571 (632)
Q Consensus 492 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 571 (632)
+...|++++|.+.+++++.... .+...+..+...+...|++++|+++++++.+.. +.+..++..+..++...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP--INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc--HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 8899999999999998876532 345667778888889999999999999988774 5677889999999999999999
Q ss_pred HHHHHHHHHHCCC
Q 006744 572 ARKVFTNLRERKL 584 (632)
Q Consensus 572 A~~~~~~m~~~~~ 584 (632)
|.++++++.+...
T Consensus 163 A~~~~~~~~~~~~ 175 (186)
T 3as5_A 163 ALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC
Confidence 9999999877653
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=8.1e-10 Score=97.27 Aligned_cols=166 Identities=17% Similarity=0.155 Sum_probs=129.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282 (632)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 282 (632)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.... +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3456677778888889999988888877653 346777888888888888999999888888876433 67778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHH
Q 006744 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362 (632)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 362 (632)
+...|++++|.+.++++.+.... +...+..+...+...|++++|..+++++.+.. ..+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888888876443 66778888888888888888888888887654 22456777777888888888888
Q ss_pred HHHHHHHHHC
Q 006744 363 FKLLAQMEKL 372 (632)
Q Consensus 363 ~~~~~~~~~~ 372 (632)
...++++.+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888777654
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=5.9e-10 Score=118.93 Aligned_cols=166 Identities=8% Similarity=0.024 Sum_probs=145.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 281 (632)
+..+|+.|...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++..+.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46789999999999999999999999988764 345788999999999999999999999999987554 6889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH
Q 006744 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361 (632)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 361 (632)
+|.+.|++++|++.|++..+.... +...|+.+..+|.+.|++++|++.|++..+.... +...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 999999999999999999987654 6789999999999999999999999998876432 56778889999999999999
Q ss_pred HHHHHHHHHH
Q 006744 362 FFKLLAQMEK 371 (632)
Q Consensus 362 a~~~~~~~~~ 371 (632)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=3e-10 Score=107.84 Aligned_cols=228 Identities=11% Similarity=0.032 Sum_probs=149.4
Q ss_pred HhcCChhHHHHHHHHHHHC-------CCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhC------C-CC-ChhHHHHH
Q 006744 354 AEMGRMDNFFKLLAQMEKL-------KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK------G-YS-SVPIYNIL 418 (632)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~-~~~~~~~l 418 (632)
...|++++|..++++..+. ..+.....+..+..+|...|++++|...++++.+. + .+ ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567788888877776552 22334556677778888899999999999887654 1 12 56678888
Q ss_pred HHHHHhcCChhhHHHHHHHHhhC------C-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHh
Q 006744 419 MGALLEIGEVKKALYLFGKMRGL------N-LEVNSLSFSIAIQCHVESGDILEACECHNKIIEM------SQVP-SVAA 484 (632)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~p-~~~~ 484 (632)
...|...|++++|...|++.... . .+....++..+...+...|++++|..+++++.+. ...| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999888764 1 1233556777888888899999999999888864 1122 3566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCCCh-HHHHHHHHHHHHHcCC------HHHHHHHHHHHHhCCCCC
Q 006744 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNV------ASGPT-EFKYALTILHVCRSGE------AEKIIEVLNEMTQEGCPP 551 (632)
Q Consensus 485 ~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~------~~~a~~~~~~m~~~g~~p 551 (632)
+..+...|...|++++|..+++++++.. ...+. ...|..+...+...+. +..+...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 7788888889999999999998877531 11111 1222222222222222 2222222222211 1123
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 552 NEVICSAIISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
...++..+..+|...|++++|.+++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3557888999999999999999999988754
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=1.2e-09 Score=100.13 Aligned_cols=196 Identities=10% Similarity=-0.074 Sum_probs=135.7
Q ss_pred cccHHHHHHHHhhhcccHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHH
Q 006744 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ 455 (632)
Q Consensus 377 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 455 (632)
++..+......+...|++++|...|++..+..+ .+...+..+..++...|++++|+..|++..+.. +-+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 345556666777788888888888888887766 566677778888888888888888888887753 234556777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh---HHHHHHHH
Q 006744 456 CHVESGDILEACECHNKIIEMSQVPSV-------AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT---EFKYALTI 525 (632)
Q Consensus 456 ~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~ 525 (632)
++...|++++|...+++.++... .+. ..|..+...+...|++++|++.|+++++. .|+ ...|..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHHH
Confidence 88888888888888888887542 233 45677777788888888888888887754 454 34555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744 526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 526 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 585 (632)
..+...| ..+++++...+ ..+...|..+. ....+.+++|...+++..+....
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence 6665433 34455555543 33444444433 33456679999999999987643
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.17 E-value=1e-09 Score=117.19 Aligned_cols=166 Identities=14% Similarity=0.012 Sum_probs=102.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006744 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316 (632)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 316 (632)
+..+|+.+..++.+.|++++|++.|++..+.... +..+|..|..+|.+.|++++|++.|++..+.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3556666666777777777777777766665433 4566666666666677777777766666665433 4556666666
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHH
Q 006744 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM 396 (632)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 396 (632)
+|.+.|++++|++.|++..+.... +...|..+..++...|++++|...|+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~----------------------------- 135 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYR----------------------------- 135 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH-----------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH-----------------------------
Confidence 666666666666666666554321 33445555555555555555554444
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 006744 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440 (632)
Q Consensus 397 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 440 (632)
+..+..+.+...|..+..+|...|++++|.+.+++..+
T Consensus 136 ------~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 136 ------TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp ------HHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred ------HHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 44444444666777777777777777777777766543
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.14 E-value=2.1e-08 Score=91.75 Aligned_cols=202 Identities=11% Similarity=-0.023 Sum_probs=136.2
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280 (632)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 280 (632)
.|...|..+...+...|++++|++.|++..+..-.++...+..+..++...|++++|++.|++..+.... +..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567788888888899999999999998887653267777777888888999999999999998886544 677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HhcHHHHH
Q 006744 281 EGLVGEGKVGKACDLLKDLVDSGYRADL-------GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD---FSTVNPLL 350 (632)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll 350 (632)
.+|...|++++|+..|++..+.... +. ..|..+...+...|++++|+..|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 8999999999999999988876443 34 45777778888888999999999888764 344 34455555
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhH
Q 006744 351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI 414 (632)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 414 (632)
.++...| ..+++.+...+... ............+.+++|...|++..+..+.+..+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASSN---KEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHH-----HHHHHHHHhcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 5554433 33334443332211 11111111223344555666665555554444333
No 87
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.03 E-value=1.1e-07 Score=89.84 Aligned_cols=228 Identities=13% Similarity=0.059 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCcCHHhHHHHHHHH----Hhc---CChh
Q 006744 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER--NLDACLRVWEEMKKDLVEADVMAYVTLIMGL----CKG---GRVV 255 (632)
Q Consensus 185 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~~~---g~~~ 255 (632)
++|+.+++.+...++ -+..+|+.--..+...| ++++++++++.+...+ +-+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 455566666655432 25667888888888888 9999999999988764 34556666555555 445 7889
Q ss_pred HHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC------HHHH
Q 006744 256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG--KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ------FDKA 327 (632)
Q Consensus 256 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~A 327 (632)
+++++++++.+...+ +..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+. ++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 999999999987666 7888888887888888888 999999999988776 88888887777777776 8889
Q ss_pred HHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCccccHHHHHHHHhhhcccHHHHHHHHHHH
Q 006744 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN-FFKLLAQMEKLK--FSVAADLEKFFEFLVGKEERIMMALDVFEEL 404 (632)
Q Consensus 328 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 404 (632)
++.++++...... |...|+.+-..+.+.|+... +..+..++.+.+ -..+......+..+|.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9998888876544 77778777777777776333 444555544322 1123344555555555555666666666655
Q ss_pred Hh-CCCCChhHHHH
Q 006744 405 KG-KGYSSVPIYNI 417 (632)
Q Consensus 405 ~~-~~~~~~~~~~~ 417 (632)
.+ .++.....|+-
T Consensus 285 ~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 285 KSKYNPIRSNFWDY 298 (306)
T ss_dssp HHTTCGGGHHHHHH
T ss_pred HhccChHHHHHHHH
Confidence 54 23334444443
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.03 E-value=1.5e-08 Score=83.60 Aligned_cols=130 Identities=11% Similarity=0.131 Sum_probs=96.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHH
Q 006744 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284 (632)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 284 (632)
.|..+...+...|++++|.++|+++.+.+ +.+...+..+...+...|++++|.++++++.+.+.. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 46667777788888888888888877653 345667777777788888888888888887776433 5667777777888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337 (632)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (632)
..|++++|.+.++++.+.... +...+..+...+.+.|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 888888888888887765433 5666777777788888888888888777653
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=1.4e-08 Score=96.76 Aligned_cols=126 Identities=11% Similarity=-0.043 Sum_probs=61.5
Q ss_pred HHHhcCChhHHHHHHHHHHHc----CCccc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C--CHhhHHHHHH
Q 006744 247 GLCKGGRVVRGHELFREMKEN----GILID-RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR---A--DLGIYNSIIG 316 (632)
Q Consensus 247 ~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---~--~~~~~~~li~ 316 (632)
.|...|++++|.+.|++..+. |-.++ ..+|+.+..+|.+.|++++|+..|++..+.... + -..+|+.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666666555432 11111 345555666666666666666666555432100 0 0234555556
Q ss_pred HHHcc-CCHHHHHHHHHHHHhCCCCC-C----HhcHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006744 317 GLCRV-KQFDKAYKLFEVTVQDDLAP-D----FSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372 (632)
Q Consensus 317 ~~~~~-g~~~~A~~~~~~m~~~~~~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 372 (632)
.|... |++++|+..|++..+..... + ..++..+...+...|++++|...+++..+.
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 66664 66666666666554321000 0 123444455555555555555555555443
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.02 E-value=1.6e-08 Score=96.37 Aligned_cols=162 Identities=11% Similarity=-0.005 Sum_probs=104.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhC----CCCcC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC----cc-cHHhHHHHH
Q 006744 211 RVLAAERNLDACLRVWEEMKKD----LVEAD-VMAYVTLIMGLCKGGRVVRGHELFREMKENGI----LI-DRAIYGVLI 280 (632)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p-~~~~~~~li 280 (632)
..|...|++++|.+.|++..+. |-.++ ..+|+.+..+|...|++++|+..|++..+... .. -..+++.+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456677777777777665432 21111 45677777777777787777777777655311 10 134677777
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh------cHHH
Q 006744 281 EGLVGE-GKVGKACDLLKDLVDSGYRA-D----LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS------TVNP 348 (632)
Q Consensus 281 ~~~~~~-g~~~~a~~~~~~m~~~g~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~ 348 (632)
..|... |++++|+..|++..+..... + ..+|+.+...|.+.|++++|+..|++..+........ .|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 888885 88888888888776531110 1 3467777888888888888888888887654332221 3455
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 006744 349 LLVCCAEMGRMDNFFKLLAQMEKL 372 (632)
Q Consensus 349 ll~~~~~~~~~~~a~~~~~~~~~~ 372 (632)
+..++...|++++|...+++..+.
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566677777777777777766543
No 91
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.02 E-value=4e-07 Score=93.15 Aligned_cols=376 Identities=8% Similarity=-0.028 Sum_probs=205.3
Q ss_pred hCC-ChhHHhHHHHHHHh---cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhC-CC-Cc
Q 006744 164 RNN-LFRAADQVPELMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN-LDACLRVWEEMKKD-LV-EA 236 (632)
Q Consensus 164 ~~~-~~~~a~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-~~-~p 236 (632)
+.| +++.|+.+|+.+.. .|+++.+..+|++.... .|++..|...+....+.++ .+....+|+..... |. ..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~ 83 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWD 83 (493)
T ss_dssp ------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTT
T ss_pred HcCcchHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcc
Confidence 345 36777777776553 37888888888888774 3688888888887777663 35566777766543 32 23
Q ss_pred CHHhHHHHHHHHH----hcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 006744 237 DVMAYVTLIMGLC----KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312 (632)
Q Consensus 237 ~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 312 (632)
+...|...+..+. .+++++.+.++|++.+.....--...|...... .+......+.+++.+..
T Consensus 84 s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~------------ 150 (493)
T 2uy1_A 84 SYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL------------ 150 (493)
T ss_dssp CHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH------------
T ss_pred cHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh------------
Confidence 5566766666543 235677788888888763211111222222111 11111222222222111
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhc--CC-----hhHHHHHHHHHHHCCCCccccHHHHHH
Q 006744 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM--GR-----MDNFFKLLAQMEKLKFSVAADLEKFFE 385 (632)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~ 385 (632)
+.+..|..+++++...-...+...|...+.--... +- .+.+..+|+++..... ....++...+
T Consensus 151 ---------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya 220 (493)
T 2uy1_A 151 ---------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYS 220 (493)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHH
Confidence 12222333333222100001122333333221111 00 2335566666665432 2344444455
Q ss_pred HHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC---------CC---CcCHHHHHHH
Q 006744 386 FLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL---------NL---EVNSLSFSIA 453 (632)
Q Consensus 386 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~---~p~~~t~~~l 453 (632)
..+.+.|+.+.|..+|++.... +.+...|.. |+...+.++. ++.+.+. +. ......|...
T Consensus 221 ~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 221 EYLIGIGQKEKAKKVVERGIEM-SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 5556677777777777777766 444443332 2221111221 1221110 00 0112446666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcC
Q 006744 454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK-IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532 (632)
Q Consensus 454 l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 532 (632)
+....+.++.+.|..+|+.+ +.. ..+...|......-.. .++.+.|..+|+..++..+..|+ .+...+......|
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~--~~~~yid~e~~~~ 368 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTL--LKEEFFLFLLRIG 368 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHcC
Confidence 66666778899999999998 321 2344445433332222 33699999999999887654443 3455667667889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 533 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 581 (632)
+.+.|..+|+.+. .....|...+.--...|+.+.+.++++++.+
T Consensus 369 ~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 369 DEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999872 3577888888877888999999998888874
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=1.3e-07 Score=88.43 Aligned_cols=83 Identities=8% Similarity=-0.041 Sum_probs=44.7
Q ss_pred ChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C----CCCCHHhHHHHHHHHHhcCC
Q 006744 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM-----S----QVPSVAAYNCLTKGLCKIGE 497 (632)
Q Consensus 427 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~----~~p~~~~~~~li~~~~~~g~ 497 (632)
++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+. . -.-+..++..+|......|+
T Consensus 193 ~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 193 TATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp TTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 666777777776543 344333334444666667777777776655432 0 02235555444444444555
Q ss_pred HHHHHHHHHHHhhcCC
Q 006744 498 IDAAMMLVRDCLGNVA 513 (632)
Q Consensus 498 ~~~A~~~~~~~~~~~~ 513 (632)
+|.+++.++.+..+
T Consensus 271 --~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 271 --DTEDLTNQLVKLDH 284 (310)
T ss_dssp --TTHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHhCC
Confidence 66666666665443
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.00 E-value=1.4e-07 Score=88.06 Aligned_cols=182 Identities=10% Similarity=0.031 Sum_probs=121.3
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL-EVNSLSFSIAIQCHVESGDILEACECHNKIIE 475 (632)
Q Consensus 397 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 475 (632)
|+..|+++.+.+..+..++..+..++...|++++|++++.+....+- .-+...+..+++.+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 56677766665544455556777888888888888888888766542 13455677777888888888888888888876
Q ss_pred CCCCC-----CHHhHHHHHHHH--HhcC--CHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744 476 MSQVP-----SVAAYNCLTKGL--CKIG--EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546 (632)
Q Consensus 476 ~~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 546 (632)
. .| +..+...|..++ ...| ++.+|..+|+++.+.. |+..+...++.++.+.|++++|.+.++.+.+
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 34 244445555552 2233 7888888888876543 4322223334467788888888888886654
Q ss_pred C-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744 547 E-----G----CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 547 ~-----g----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 585 (632)
. + -+.|..++..++......|+ +|.+++.++.+..+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 3 0 14466677666666666776 788888888887643
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.00 E-value=5.5e-08 Score=91.01 Aligned_cols=174 Identities=9% Similarity=-0.064 Sum_probs=99.2
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-HHhH
Q 006744 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN---SLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PS-VAAY 485 (632)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~-~~~~ 485 (632)
+...+-.+...+.+.|++++|...|+++.+.. +-+ ...+..+..++...|++++|...|+++++.... +. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 33444445555555555555555555555432 111 334444455555555555555555555543211 11 2334
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHhhcCCCCChHHH---------------HHHHHHHHHHcCCHHHHHHHHH
Q 006744 486 NCLTKGLCK--------IGEIDAAMMLVRDCLGNVASGPTEFK---------------YALTILHVCRSGEAEKIIEVLN 542 (632)
Q Consensus 486 ~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~p~~~~---------------~~~l~~~~~~~g~~~~a~~~~~ 542 (632)
..+..++.. .|++++|+..|+++++..+..+.... +..+...|...|++++|+..|+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 444455555 55555555555555544333222221 1346777888899999999999
Q ss_pred HHHhCCCC--CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCC
Q 006744 543 EMTQEGCP--PNEVICSAIISGMCKH----------GTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 543 ~m~~~g~~--p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~ 585 (632)
++.+.... .....+..+..+|... |++++|...|+++.+....
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 88876311 1345677788888766 8889999999999887643
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.97 E-value=3.1e-08 Score=92.73 Aligned_cols=62 Identities=8% Similarity=0.007 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhC
Q 006744 486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGP-TEFKYALTILHVCRS----------GEAEKIIEVLNEMTQE 547 (632)
Q Consensus 486 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~ 547 (632)
..+...|.+.|++++|+..|+++++..+..+ ....+..+..+|... |++++|+..++++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4567788899999999999999887654433 344566677777755 8889999999998876
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.93 E-value=5.4e-08 Score=80.13 Aligned_cols=130 Identities=13% Similarity=0.131 Sum_probs=102.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006744 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319 (632)
Q Consensus 240 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 319 (632)
.|..+...+...|++++|.++++++.+.+.. +...+..+...+...|++++|...++++...+.. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 5667788888889999999999988876543 6677888888888889999999999888876543 5667888888888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006744 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372 (632)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 372 (632)
..|++++|.++++++.+... .+...+..+...+...|++++|...+.++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 89999999999988876542 24566777777888888888888888777654
No 97
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.93 E-value=3.9e-06 Score=85.83 Aligned_cols=340 Identities=10% Similarity=-0.027 Sum_probs=177.9
Q ss_pred CChhHHhHHHHHHHh-----------------cC-CHHHHHHHHHHHHhC-CCC-cCHHhHHHHHHHHH----hcCChhH
Q 006744 166 NLFRAADQVPELMDS-----------------QG-RIAEMLEILEKMRRN-LCK-PDVFAYTAMIRVLA----AERNLDA 221 (632)
Q Consensus 166 ~~~~~a~~l~~~~~~-----------------~g-~~~~a~~~~~~m~~~-~~~-~~~~~~~~li~~~~----~~g~~~~ 221 (632)
|.++.++.+|++... .| ..+....+|+..... |.. .+...|...+..+. ..|+++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 667777777776553 22 235567778876653 433 36778888887654 3467889
Q ss_pred HHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301 (632)
Q Consensus 222 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (632)
+.++|++.......--...|...... ....+...+.+++.+.. +.+..|..+++.+..
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~ 165 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQIQP 165 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh---------------------HHHHHHHHHHHHHHH
Confidence 99999999874211111222222211 11111222222222211 111222222222221
Q ss_pred CCCCCCHhhHHHHHHHHHccC-------CHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 006744 302 SGYRADLGIYNSIIGGLCRVK-------QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374 (632)
Q Consensus 302 ~g~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 374 (632)
.-...+...|...+.--...+ ..+.+..+|+++.... .-+...|...+..+.+.|+.+.|..++++....
T Consensus 166 ~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-- 242 (493)
T 2uy1_A 166 LIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-- 242 (493)
T ss_dssp HHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Confidence 000012223433333222110 0233445555555432 223444555555555566666666666666555
Q ss_pred CccccHHHHHHHHhhhcccHHHHHHHHHHHHhCC-----------C-C-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 006744 375 SVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-----------Y-S-SVPIYNILMGALLEIGEVKKALYLFGKMRGL 441 (632)
Q Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 441 (632)
+.+..+.. .|+...+.++. ++.+.+.- . . ...+|...+..+.+.++.+.|..+|++. ..
T Consensus 243 P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~ 314 (493)
T 2uy1_A 243 SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN 314 (493)
T ss_dssp CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT
T ss_pred CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC
Confidence 21211111 11111111111 11111100 0 0 2345777777777788899999999998 32
Q ss_pred CCCcCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHH
Q 006744 442 NLEVNSLSFSIAIQCHV-ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK 520 (632)
Q Consensus 442 ~~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 520 (632)
. ..+...|......-. ..++.+.|..+|+...+... -+...+...++...+.|+.+.|..+|+.+. .....
T Consensus 315 ~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~l 386 (493)
T 2uy1_A 315 E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRM 386 (493)
T ss_dssp S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHH
T ss_pred C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHH
Confidence 1 223344433222222 23479999999999988542 234556667888888999999999999862 24566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744 521 YALTILHVCRSGEAEKIIEVLNEMTQ 546 (632)
Q Consensus 521 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 546 (632)
|...+.--...|+.+.+.++++++.+
T Consensus 387 w~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 387 WDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77666666677999999998888764
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.92 E-value=1.5e-06 Score=82.04 Aligned_cols=223 Identities=10% Similarity=0.034 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCcccHHhHHHHHHHH----Hhc---CCHH
Q 006744 220 DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG--RVVRGHELFREMKENGILIDRAIYGVLIEGL----VGE---GKVG 290 (632)
Q Consensus 220 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~---g~~~ 290 (632)
++|+++++.++..+ +-+...|+.--.++...| ++++++++++.+...+.+ +..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 46666666666543 223445555555555555 666666666666665443 444444433333 333 4556
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHH--HHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHH
Q 006744 291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD--KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368 (632)
Q Consensus 291 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 368 (632)
+++++++.+.+...+ +..+|+.-.-.+.+.|.++ +++++++++.+.+.. |...|+.-.......+..
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~--------- 196 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL--------- 196 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG---------
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc---------
Confidence 666666666655443 5555555555555555555 555555555554333 333333222222221110
Q ss_pred HHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhh-HHHHHHHHhhCC--CCc
Q 006744 369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKK-ALYLFGKMRGLN--LEV 445 (632)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p 445 (632)
.....++++++.++.+...++.+...|+.+...+.+.|+..+ +..+..++...+ -..
T Consensus 197 --------------------~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (306)
T 3dra_A 197 --------------------ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT 256 (306)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES
T ss_pred --------------------chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC
Confidence 000125666666777666666677777777777777776443 444555544322 122
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744 446 NSLSFSIAIQCHVESGDILEACECHNKIIE 475 (632)
Q Consensus 446 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 475 (632)
+...+..+..++.+.|+.++|.++++.+.+
T Consensus 257 s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 257 SSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 344555555555566666666666666554
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.91 E-value=2.9e-07 Score=83.88 Aligned_cols=185 Identities=10% Similarity=-0.029 Sum_probs=110.3
Q ss_pred HHHHHHhhhcccHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH----HHHHHH
Q 006744 382 KFFEFLVGKEERIMMALDVFEELKGKGYSS---VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL----SFSIAI 454 (632)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll 454 (632)
......+.+.|++++|+..|+++.+..+.+ ...+..+..+|.+.|++++|+..|+++.+.. |+.. .+..+.
T Consensus 8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHHH
Confidence 334455667777777777777777654432 3466667777777777777777777776642 2221 233333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHH--------------
Q 006744 455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK-------------- 520 (632)
Q Consensus 455 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-------------- 520 (632)
.++...+.. .+ ..|..+...+...|++++|+..|+++++..+..+....
T Consensus 86 ~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 86 LTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp HHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence 333331100 00 00111112222345556666666655544333332211
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744 521 -YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE---VICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586 (632)
Q Consensus 521 -~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 586 (632)
...+...+.+.|++++|+..|+++.+.. +.+. ..+..+..+|.+.|++++|.+.++.+...+...
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 1235667788999999999999999863 3233 568889999999999999999999999887643
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=5.7e-08 Score=104.19 Aligned_cols=174 Identities=12% Similarity=0.025 Sum_probs=103.1
Q ss_pred hhcccHHHHHHHHHHHH--------hCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc
Q 006744 389 GKEERIMMALDVFEELK--------GKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES 460 (632)
Q Consensus 389 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 460 (632)
...|++++|++.+++.. +..+.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45566666666666666 4444456666666666777777777777776666542 23445566666666667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 006744 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV 540 (632)
Q Consensus 461 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 540 (632)
|++++|.+.|+++++... -+...+..+..+|.+.|++++ ++.|+++++... .+...|..+..++...|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTND--GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC--chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777776666432 235556666666667777766 666666665422 2334555566666677777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006744 541 LNEMTQEGCPPNEVICSAIISGMCKHGT 568 (632)
Q Consensus 541 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 568 (632)
|+++.+.+ +-+...|..+..++...|+
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 76666552 2234455555555544443
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=2.4e-08 Score=107.17 Aligned_cols=169 Identities=13% Similarity=0.011 Sum_probs=94.5
Q ss_pred HhcCChhHHHHHHHHHH--------HcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006744 249 CKGGRVVRGHELFREMK--------ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320 (632)
Q Consensus 249 ~~~g~~~~a~~~~~~m~--------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 320 (632)
...|++++|++.+++.. +... .+...+..+...|...|++++|++.|+++.+.... +...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 55677777777777766 3322 24556666667777777777777777777665443 55666666777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHH
Q 006744 321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV 400 (632)
Q Consensus 321 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 400 (632)
.|++++|+..|++..+.... +...+..+..++.+.|++++ .+.|+++.+.... +...+..+..+|.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776654322 34455566666666666666 6666666554432 222333333334444444444444
Q ss_pred HHHHHhCCCCChhHHHHHHHHH
Q 006744 401 FEELKGKGYSSVPIYNILMGAL 422 (632)
Q Consensus 401 ~~~~~~~~~~~~~~~~~li~~~ 422 (632)
|+++.+.++.+...|..+..++
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHT
T ss_pred HHhhcccCcccHHHHHHHHHHH
Confidence 4444433333333333333333
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.87 E-value=9.1e-08 Score=85.97 Aligned_cols=131 Identities=15% Similarity=0.049 Sum_probs=67.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 006744 418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE 497 (632)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 497 (632)
+..+|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++++... -+..++..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhH
Confidence 6666666666666666666666542 23445555666666666666666666666665431 235555555555544432
Q ss_pred --HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006744 498 --IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555 (632)
Q Consensus 498 --~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 555 (632)
.+.+...++.+. ...|....+.....++...|++++|+..|++..+. .|+...
T Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 138 QEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 233344443332 11222222333344444556666666666666654 345443
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.86 E-value=2.5e-07 Score=83.36 Aligned_cols=175 Identities=13% Similarity=0.059 Sum_probs=131.6
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 006744 396 MALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG----DILEACECHN 471 (632)
Q Consensus 396 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~ 471 (632)
+|.+.|++..+.+ +...+..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|.++|+
T Consensus 4 eA~~~~~~aa~~g--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEAG--DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3555666666654 67778888888888888888888888888765 45566666666666 6 7888888888
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCC---hHHHHHHHHHHHHH----cCCHHHHHHH
Q 006744 472 KIIEMSQVPSVAAYNCLTKGLCK----IGEIDAAMMLVRDCLGNVASGP---TEFKYALTILHVCR----SGEAEKIIEV 540 (632)
Q Consensus 472 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~----~g~~~~a~~~ 540 (632)
+..+.+ +...+..|...|.. .+++++|++.|++..+. .+ ....+..|...|.. .++.++|+.+
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 887754 56667777777776 78899999999887754 33 25666678888877 7789999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCCC
Q 006744 541 LNEMTQEGCPPNEVICSAIISGMCKH-G-----TLEEARKVFTNLRERKL 584 (632)
Q Consensus 541 ~~~m~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 584 (632)
|++..+. ..+...+..|...|..- | +.++|.++|++..+.|.
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9998887 23455677777777653 3 89999999999988875
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=3e-08 Score=95.33 Aligned_cols=161 Identities=10% Similarity=0.011 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----C
Q 006744 412 VPIYNILMGALLEIGEVKKALYLFGKMRGL----NLEV-NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP-----S 481 (632)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p-----~ 481 (632)
..+|+.+...|...|++++|+..|++..+. |-.. -..++..+...|.. |++++|...|++.++..... .
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 346778888888889999988888876543 2111 13466777777877 99999999988877532111 1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---Ch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC--H
Q 006744 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PT-EFKYALTILHVCRSGEAEKIIEVLNEMTQEGC--PPN--E 553 (632)
Q Consensus 482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~--~p~--~ 553 (632)
..++..+...|...|++++|+..|++++...... +. ...+..++..+...|++++|+..|++.. ... ... .
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~ 233 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHH
Confidence 4567788888999999999999999887532111 11 2245556667777799999999999887 421 111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH
Q 006744 554 VICSAIISGMCKHGTLEEARKV 575 (632)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~ 575 (632)
.....++.++ ..|+.+.+.++
T Consensus 234 ~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 234 AALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHH-HhcCHHHHHHH
Confidence 2344555555 56777666553
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=1e-07 Score=91.62 Aligned_cols=160 Identities=10% Similarity=0.006 Sum_probs=85.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC---Cc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCc-ccHHhHHHH
Q 006744 210 IRVLAAERNLDACLRVWEEMKKDLV---EA--DVMAYVTLIMGLCKGGRVVRGHELFREMKEN----GIL-IDRAIYGVL 279 (632)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~l 279 (632)
...|...|++++|.+.|.+..+... .+ -..+|+.+..+|...|++++|+..|++..+. |-. .-..++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445566666666666665543210 00 1235666666666777777777777665442 111 013455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HhcHHHH
Q 006744 280 IEGLVGEGKVGKACDLLKDLVDSGYRA-----DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD----DLAPD-FSTVNPL 349 (632)
Q Consensus 280 i~~~~~~g~~~~a~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l 349 (632)
...|.. |++++|+..|++..+..... ...+++.+...|.+.|++++|+..|++..+. +..+. ...+..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 666666 77777777776665421100 1345666666677777777777777666542 11111 1133344
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 006744 350 LVCCAEMGRMDNFFKLLAQME 370 (632)
Q Consensus 350 l~~~~~~~~~~~a~~~~~~~~ 370 (632)
..++...|++++|...+++..
T Consensus 202 g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHh
Confidence 445555566666666666555
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.84 E-value=5.4e-08 Score=84.86 Aligned_cols=157 Identities=11% Similarity=-0.006 Sum_probs=81.4
Q ss_pred HHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHH-HHHcCCH
Q 006744 385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC-HVESGDI 463 (632)
Q Consensus 385 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~g~~ 463 (632)
...+...|++++|...|++..+..+.+...+..+...+...|++++|+..|++..... |+...+...... +...+..
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAE 90 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhccc
Confidence 3445556666666666666665555566777777777777777777777777765532 333222211111 1111222
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006744 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE 543 (632)
Q Consensus 464 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 543 (632)
..|...+++.++... -+...+..+..++...|++++|+..|+++++..+...+...+..+...+...|+.++|+..|++
T Consensus 91 ~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 91 SPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp CHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred chHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 234555555554321 1345555555556666666666666655554322222233344445555555555555555544
Q ss_pred H
Q 006744 544 M 544 (632)
Q Consensus 544 m 544 (632)
.
T Consensus 170 a 170 (176)
T 2r5s_A 170 Q 170 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.83 E-value=8.1e-08 Score=86.30 Aligned_cols=107 Identities=8% Similarity=0.004 Sum_probs=56.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCc-CHHhHHH----------------HHHHHHhcCChhHHHHHHHHHHHcCCcccH
Q 006744 211 RVLAAERNLDACLRVWEEMKKDLVEA-DVMAYVT----------------LIMGLCKGGRVVRGHELFREMKENGILIDR 273 (632)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 273 (632)
..+...|++++|+..|++..+.. | +...|.. +..++.+.|++++|+..|++..+.... +.
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~ 88 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-NV 88 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CH
Confidence 34445555666666555555432 2 2223333 555555556666666666555554333 45
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 006744 274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321 (632)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 321 (632)
..+..+..+|...|++++|+..|++..+..+. +..+|..+...|...
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 55555555566666666666666655554433 444555555554443
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.83 E-value=1e-07 Score=90.44 Aligned_cols=162 Identities=10% Similarity=0.025 Sum_probs=95.1
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHH-HHHH
Q 006744 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI-QCHV 458 (632)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll-~~~~ 458 (632)
....+...+...|++++|...|++..+..+.+...+..+...+...|++++|...++++... .|+........ ..+.
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHH
Confidence 33444445556666666666666666666666667777777777777777777777766553 34433222222 2345
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 006744 459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII 538 (632)
Q Consensus 459 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 538 (632)
..++.+.|...+++..+.. +.+...+..+...|...|++++|+..|++++...+...+...+..++..+...|+.++|.
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 5566666666666666543 224556666666666777777777777666655333333444555555555556655555
Q ss_pred HHHHHH
Q 006744 539 EVLNEM 544 (632)
Q Consensus 539 ~~~~~m 544 (632)
..+++.
T Consensus 276 ~~~r~a 281 (287)
T 3qou_A 276 SXYRRQ 281 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.80 E-value=6.3e-08 Score=84.38 Aligned_cols=161 Identities=10% Similarity=0.066 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH-HH
Q 006744 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG-LV 284 (632)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~ 284 (632)
+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...|++..+... +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 3344455566666666666666554432 22445566666666666666666666666544322 32222221111 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHhcHHHHHHHHHhcCChhHHH
Q 006744 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP-DFSTVNPLLVCCAEMGRMDNFF 363 (632)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~ 363 (632)
..++..+|...|++..+..+. +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 212223355666666554332 45566666666666666666666666666543322 2335555666666666666666
Q ss_pred HHHHHHH
Q 006744 364 KLLAQME 370 (632)
Q Consensus 364 ~~~~~~~ 370 (632)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.78 E-value=6.5e-07 Score=81.47 Aligned_cols=206 Identities=8% Similarity=-0.083 Sum_probs=127.4
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--hcHH
Q 006744 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD--LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF--STVN 347 (632)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~ 347 (632)
+...+..+...+.+.|++++|+..|+++.+..+... ...+..+..+|.+.|++++|+..|++..+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345566677788899999999999999987643211 356777888999999999999999998875332111 1333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 006744 348 PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE 427 (632)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 427 (632)
.+..++...+.. .+.. +..+...+...|+.++|...|+++.+..+.+..++........-
T Consensus 83 ~~g~~~~~~~~~-----~~~~------------~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~--- 142 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQG------------FFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL--- 142 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH---
T ss_pred HHHHHHHhhhhh-----hhhh------------hhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH---
Confidence 334444333211 1111 11122234456888999999999888876665554432221110
Q ss_pred hhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHH
Q 006744 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS--VAAYNCLTKGLCKIGEIDAAMMLV 505 (632)
Q Consensus 428 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 505 (632)
...+. .....+...+.+.|++++|...|+++++...... ...+..+..+|.+.|+.++|.+.+
T Consensus 143 -------~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 143 -------KDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp -------HHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------HHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 00000 0112445677888899999999988887542211 256777888888999999999998
Q ss_pred HHHhhcC
Q 006744 506 RDCLGNV 512 (632)
Q Consensus 506 ~~~~~~~ 512 (632)
+.+....
T Consensus 208 ~~l~~~~ 214 (225)
T 2yhc_A 208 KIIAANS 214 (225)
T ss_dssp HHHHHCC
T ss_pred HHHHhhC
Confidence 8877553
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=1.8e-07 Score=88.71 Aligned_cols=63 Identities=14% Similarity=0.059 Sum_probs=34.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006744 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ 336 (632)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (632)
...+..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|...+++...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344445555555556666666666655554333 444555555666666666666666655543
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.77 E-value=7.2e-07 Score=80.27 Aligned_cols=176 Identities=13% Similarity=-0.054 Sum_probs=129.3
Q ss_pred HHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC----ChhHHHHHHH
Q 006744 187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG----RVVRGHELFR 262 (632)
Q Consensus 187 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~~~ 262 (632)
|+..|++..+. -+..++..|...|...+++++|++.|++..+.| +...+..+...|.. + ++++|.++|+
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 44555555554 367778888888888899999999999888765 56677777777777 6 8889999998
Q ss_pred HHHHcCCcccHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHc----cCCHHHHHHHHHH
Q 006744 263 EMKENGILIDRAIYGVLIEGLVG----EGKVGKACDLLKDLVDSGYR-ADLGIYNSIIGGLCR----VKQFDKAYKLFEV 333 (632)
Q Consensus 263 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 333 (632)
+..+.| +...+..|...|.. .++.++|++.|++..+.|.. .+...+..|...|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 887765 56677778778876 78889999999888877542 025677778888877 7788899998888
Q ss_pred HHhCCCCCCHhcHHHHHHHHHhc-C-----ChhHHHHHHHHHHHCCC
Q 006744 334 TVQDDLAPDFSTVNPLLVCCAEM-G-----RMDNFFKLLAQMEKLKF 374 (632)
Q Consensus 334 m~~~~~~p~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~~ 374 (632)
..+.+ .+...+..|...|... | +.++|..+++...+.|.
T Consensus 155 A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87752 2334555566666543 2 77888888887777654
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.77 E-value=1.7e-07 Score=98.80 Aligned_cols=153 Identities=12% Similarity=-0.034 Sum_probs=118.9
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHH
Q 006744 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF 261 (632)
Q Consensus 182 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 261 (632)
|++++|+..|++..+... .+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 556677777777665432 357889999999999999999999999998874 446788999999999999999999999
Q ss_pred HHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc---CCHHHHHHHHHHHHhCC
Q 006744 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV---KQFDKAYKLFEVTVQDD 338 (632)
Q Consensus 262 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~ 338 (632)
++..+.... +...+..+..+|.+.|++++|.+.|++..+.... +...+..+...+... |++++|.+.+++..+.+
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999887544 6788999999999999999999999999887554 677888899999999 99999999999988764
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.77 E-value=3.2e-08 Score=83.55 Aligned_cols=110 Identities=9% Similarity=-0.030 Sum_probs=49.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHH
Q 006744 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD 294 (632)
Q Consensus 215 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 294 (632)
..|++++|++.++...... +-+...+-.+...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|+.
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHH
Confidence 3344445544444443321 111223334444455555555555555554444322 34445555555555555555555
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHH
Q 006744 295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327 (632)
Q Consensus 295 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 327 (632)
.|++..+..+. +..+|..+...|.+.|++++|
T Consensus 87 ~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 87 CYRRSVELNPT-QKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHH
Confidence 55554444322 344444444555555554433
No 115
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.76 E-value=6.4e-08 Score=81.70 Aligned_cols=139 Identities=9% Similarity=-0.040 Sum_probs=110.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHH
Q 006744 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL 260 (632)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 260 (632)
+|++++|+..++...... +-+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++...|++++|+..
T Consensus 10 ~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 456777777777766532 1234567788899999999999999999998874 45788999999999999999999999
Q ss_pred HHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 006744 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL-LKDLVDSGYRADLGIYNSIIGGLCRVKQ 323 (632)
Q Consensus 261 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g~ 323 (632)
|++..+.... +..+|..+...|.+.|+.++|.+. +++..+..+. +..+|......+...|+
T Consensus 88 ~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 88 YRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 9999997654 688999999999999999876665 5888876544 66777777777766664
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.73 E-value=2.6e-07 Score=97.31 Aligned_cols=156 Identities=13% Similarity=-0.035 Sum_probs=120.8
Q ss_pred cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHH
Q 006744 216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL 295 (632)
Q Consensus 216 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 295 (632)
.|++++|++.|++..+.. +-+...|..+...+...|++++|.+.|++..+.... +...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 346788999999999999999999999999987544 688999999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhc---CChhHHHHHHHHHHHC
Q 006744 296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM---GRMDNFFKLLAQMEKL 372 (632)
Q Consensus 296 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~ 372 (632)
|++..+.... +...|..+...|.+.|++++|.+.|++..+... -+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999987654 678899999999999999999999999987643 2567788888999999 9999999999999887
Q ss_pred CCC
Q 006744 373 KFS 375 (632)
Q Consensus 373 ~~~ 375 (632)
+..
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 654
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=2e-06 Score=81.82 Aligned_cols=169 Identities=7% Similarity=-0.112 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---CC--H
Q 006744 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN-S----LSFSIAIQCHVESGDILEACECHNKIIEMSQV---PS--V 482 (632)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---p~--~ 482 (632)
..+...+..+...|++++|.+.+.+..+...... . ..+..+...+...|++++|...+++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455667788889999999999888776532211 1 12334555667788999999999988754221 12 4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHh---hcCCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCC-C
Q 006744 483 AAYNCLTKGLCKIGEIDAAMMLVRDCL---GNVASGPT--EFKYALTILHVCRSGEAEKIIEVLNEMTQEG----CPP-N 552 (632)
Q Consensus 483 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g----~~p-~ 552 (632)
.+++.+...|...|++++|+..|++++ +..+..+. ...|..+...|...|++++|++.+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578888999999999999999999887 33222222 2477788999999999999999999877541 111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 006744 553 EVICSAIISGMCKHGTLEEA-RKVFTNLRE 581 (632)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 581 (632)
..+|..+..+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 66888999999999999999 777877654
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.72 E-value=4.4e-06 Score=79.68 Aligned_cols=169 Identities=11% Similarity=-0.017 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhc-C-ChhHHHHHH
Q 006744 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER-NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG-G-RVVRGHELF 261 (632)
Q Consensus 185 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g-~~~~a~~~~ 261 (632)
++|+++++.+...+.. +..+|+.--..+...| .+++++++++.+.... +-+..+|+.-..++... + +.+++++++
T Consensus 71 e~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 3445555555554322 5666777777777777 5888888888888765 44667777776666665 6 788888888
Q ss_pred HHHHHcCCcccHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC-------HHH
Q 006744 262 REMKENGILIDRAIYGVLIEGLVGEGKVG--------KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ-------FDK 326 (632)
Q Consensus 262 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~~ 326 (632)
+++.+.... |..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+. +++
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHH
Confidence 888877555 6667766555555555555 888888888887665 78888888777777775 678
Q ss_pred HHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCC
Q 006744 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358 (632)
Q Consensus 327 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 358 (632)
+++.++++...... |...|+.+-..+.+.|.
T Consensus 227 ELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 227 ELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 88888877765433 66666665555555554
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=1.1e-06 Score=79.12 Aligned_cols=129 Identities=9% Similarity=-0.039 Sum_probs=100.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHH
Q 006744 205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV 284 (632)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 284 (632)
.+..+...+...|++++|++.|++.. .++...|..+..++...|++++|.+.|++..+.... +...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 35556667778888888888888764 567788888888888888888888888888876533 6778888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC---------------CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006744 285 GEGKVGKACDLLKDLVDSGYRA---------------DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD 338 (632)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~g~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 338 (632)
..|++++|...|++..+..... ....|..+..+|.+.|++++|...|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888888753321 12577788888888899999999988887654
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.67 E-value=2.3e-06 Score=81.49 Aligned_cols=164 Identities=7% Similarity=-0.012 Sum_probs=115.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC-CCcCH----HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCc-cc----HHhHH
Q 006744 208 AMIRVLAAERNLDACLRVWEEMKKDL-VEADV----MAYVTLIMGLCKGGRVVRGHELFREMKENGIL-ID----RAIYG 277 (632)
Q Consensus 208 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~ 277 (632)
..+..+...|++++|.+++++..+.. ..++. ..+..+...+...|++++|+..|++..+.... .+ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999999887643 12221 13334666667778899999999998874322 12 33688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HhcH
Q 006744 278 VLIEGLVGEGKVGKACDLLKDLVDS-----GYRAD-LGIYNSIIGGLCRVKQFDKAYKLFEVTVQD----DLAPD-FSTV 346 (632)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~ 346 (632)
.+...|...|++++|+..|+++.+. +..+. ..+|..+...|.+.|++++|+..+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888999999999999999888741 11112 337788888999999999999998877642 22222 4567
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHH
Q 006744 347 NPLLVCCAEMGR-MDNFFKLLAQMEK 371 (632)
Q Consensus 347 ~~ll~~~~~~~~-~~~a~~~~~~~~~ 371 (632)
..+..++.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 777788888884 5888888877643
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.65 E-value=2.3e-05 Score=74.72 Aligned_cols=183 Identities=9% Similarity=-0.040 Sum_probs=104.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhc-C-CH
Q 006744 213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG-RVVRGHELFREMKENGILIDRAIYGVLIEGLVGE-G-KV 289 (632)
Q Consensus 213 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g-~~ 289 (632)
..+.+..++|+++++++...+ +-+..+|+.--.++...| .+++++++++.+.....+ +..+|+.-...+.+. + +.
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 334444567777777777654 334555666666666666 477777777777776555 666666665555555 5 66
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHH--------HHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH
Q 006744 290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD--------KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361 (632)
Q Consensus 290 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 361 (632)
++++++++.+.+...+ |..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.....+.+.+...
T Consensus 142 ~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~- 218 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE- 218 (349)
T ss_dssp HHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC-
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc-
Confidence 7777777777766544 6666665555544444444 555555555554332 4444443333333322200
Q ss_pred HHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 006744 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE 427 (632)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 427 (632)
.....++++++.+++.....+.+...|+.+-..+.+.|+
T Consensus 219 ---------------------------~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 ---------------------------TSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred ---------------------------cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 000124566666666666666677777766666665554
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=5.7e-06 Score=78.69 Aligned_cols=163 Identities=7% Similarity=-0.085 Sum_probs=92.1
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCC-CCcCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHhHHHH
Q 006744 419 MGALLEIGEVKKALYLFGKMRGLN-LEVNSL----SFSIAIQCHVESGDILEACECHNKIIEMSQV-PS----VAAYNCL 488 (632)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l 488 (632)
+..+...|++++|..++++..... ..++.. .+..+...+...|++++|...++++.+.... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445555666666666666655432 112211 1223444455555666666666666653211 12 2246666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhc---C-CCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHH
Q 006744 489 TKGLCKIGEIDAAMMLVRDCLGN---V-ASGPTE-FKYALTILHVCRSGEAEKIIEVLNEMTQE----GCPPN-EVICSA 558 (632)
Q Consensus 489 i~~~~~~g~~~~A~~~~~~~~~~---~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ 558 (632)
...|...|++++|+..|+++++. . ...+.. .+|..+...|...|++++|++.+++..+. +.... ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66677777777777777666521 1 112222 24566677777777777777777665542 21222 567778
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHH
Q 006744 559 IISGMCKHG-TLEEARKVFTNLRE 581 (632)
Q Consensus 559 l~~~~~~~g-~~~~A~~~~~~m~~ 581 (632)
+..+|.+.| ++++|.+.+++..+
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 888888888 46888888777754
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.63 E-value=3.5e-07 Score=86.38 Aligned_cols=97 Identities=7% Similarity=-0.056 Sum_probs=55.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006744 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317 (632)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 317 (632)
...+..+...+...|++++|...|++..+.... +...|..+..+|.+.|++++|+..+++..+.... +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 344455555555566666666666655554322 4555555666666666666666666666554332 44555566666
Q ss_pred HHccCCHHHHHHHHHHHHh
Q 006744 318 LCRVKQFDKAYKLFEVTVQ 336 (632)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~ 336 (632)
|...|++++|+..|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665543
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.62 E-value=4.2e-06 Score=75.19 Aligned_cols=130 Identities=14% Similarity=-0.056 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 006744 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493 (632)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 493 (632)
.+..+...+...|++++|...|++.. .|+...+..+...+...|++++|...|++..+.. ..+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 35566777888888888888888763 5577788888888888888888888888888754 235677888888888
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCC--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006744 494 KIGEIDAAMMLVRDCLGNVASGP--------------TEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548 (632)
Q Consensus 494 ~~g~~~~A~~~~~~~~~~~~~~p--------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 548 (632)
..|++++|+..|+++++..+..+ ....+..+...+...|++++|++.|+++.+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88888888888888876543322 23556667788888888888888888888763
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.62 E-value=8.8e-07 Score=81.61 Aligned_cols=189 Identities=9% Similarity=-0.054 Sum_probs=139.1
Q ss_pred hcccHHHHHHHHHHHHhCCCCChhHHHHH-------HHHHHhcCChhhHHHHHHHHhhCCCCcC----------------
Q 006744 390 KEERIMMALDVFEELKGKGYSSVPIYNIL-------MGALLEIGEVKKALYLFGKMRGLNLEVN---------------- 446 (632)
Q Consensus 390 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~p~---------------- 446 (632)
..++...|.+.|.++...++.....|+.+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46888888888888888887788888888 5677777777777776666554 2222
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh--H
Q 006744 447 ------SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT--E 518 (632)
Q Consensus 447 ------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~ 518 (632)
......+...+...|++++|.++|..+...+ |+....-.+...+.+.|++++|+..|+...... .|. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHH
Confidence 1223445667888999999999998887644 443355566668889999999999998654321 121 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN--EVICSAIISGMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...+.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3455688889999999999999999885433243 34667788889999999999999999998764
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.61 E-value=6.4e-07 Score=79.86 Aligned_cols=119 Identities=12% Similarity=0.033 Sum_probs=59.8
Q ss_pred cccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCC-cCHHHHHHHHHHHHHcCCHHH
Q 006744 391 EERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL----NLE-VNSLSFSIAIQCHVESGDILE 465 (632)
Q Consensus 391 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~t~~~ll~~~~~~g~~~~ 465 (632)
.|++++|.++++.+.........++..+...+...|++++|...+++.... +.. .....+..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 455566665433333321124556666666777777777777766665441 111 122344455555556666666
Q ss_pred HHHHHHHHHHC----CCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 466 ACECHNKIIEM----SQVP--SVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 466 a~~~~~~~~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
|...+++..+. +..+ ....+..+...+...|++++|...+++.+
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66665555432 1011 12334445555555566666655555543
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=1.8e-06 Score=74.02 Aligned_cols=130 Identities=9% Similarity=-0.044 Sum_probs=90.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282 (632)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 282 (632)
...|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|.+.+++..+.... +..++..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 3456667777778888888888888777653 345677777777888888888888888887776433 56677777778
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH--HHHHHHccCCHHHHHHHHHHHH
Q 006744 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNS--IIGGLCRVKQFDKAYKLFEVTV 335 (632)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~ 335 (632)
+...|++++|...|++..+.... +...+.. ++..+.+.|++++|+..+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888877765433 3344432 3333666777777777776543
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.57 E-value=2.1e-06 Score=73.53 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 006744 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC 493 (632)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 493 (632)
.|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. ..+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34555555555555555555555554432 2233444444444455555555555555444432 122334444444444
Q ss_pred hcCCHHHHHHHHHHHhh
Q 006744 494 KIGEIDAAMMLVRDCLG 510 (632)
Q Consensus 494 ~~g~~~~A~~~~~~~~~ 510 (632)
..|++++|...|+++++
T Consensus 93 ~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 93 ALGKFRAALRDYETVVK 109 (166)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44555555444444443
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.57 E-value=6.9e-07 Score=74.99 Aligned_cols=98 Identities=7% Similarity=-0.144 Sum_probs=65.4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282 (632)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 282 (632)
...+..+...+.+.|++++|++.|++..+.. +-+...|..+..++...|++++|++.|++..+.... +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 4456666666677777777777777766653 335666666777777777777777777777665443 55666667777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 006744 283 LVGEGKVGKACDLLKDLVDS 302 (632)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~ 302 (632)
|.+.|++++|...|++..+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776664
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.56 E-value=1.9e-06 Score=69.95 Aligned_cols=99 Identities=13% Similarity=-0.047 Sum_probs=65.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHH
Q 006744 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283 (632)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 283 (632)
..|......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.|++.++.+.. +...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 345566666777777777777777766553 345666666777777777777777777776665433 556666666777
Q ss_pred HhcCCHHHHHHHHHHHHHCCC
Q 006744 284 VGEGKVGKACDLLKDLVDSGY 304 (632)
Q Consensus 284 ~~~g~~~~a~~~~~~m~~~g~ 304 (632)
...|++++|++.|++..+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHCCCHHHHHHHHHHHHHHCc
Confidence 777777777777776666543
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=2.2e-06 Score=69.10 Aligned_cols=113 Identities=10% Similarity=0.063 Sum_probs=70.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282 (632)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 282 (632)
...|..+...+...|++++|.++|+++.+.. +.+..++..+...+...|++++|..+++++.+.... +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 4556666677777777777777777766543 335566666677777777777777777776665332 45566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006744 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318 (632)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 318 (632)
|...|++++|...|+++.+.... +...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 67777777777777666655332 334444444433
No 132
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.55 E-value=3.3e-05 Score=73.30 Aligned_cols=158 Identities=12% Similarity=0.001 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC--
Q 006744 185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN----------LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG-- 252 (632)
Q Consensus 185 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-- 252 (632)
++|+.+++.+...++. +..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-..++...+
T Consensus 47 ~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 47 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcc
Confidence 3566667776665432 45556655444443333 567788888777654 446677777766676666
Q ss_pred ChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc----------
Q 006744 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK-VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV---------- 321 (632)
Q Consensus 253 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---------- 321 (632)
.+++++++++++.+.... |..+|+.-.-.+...|. ++++++.++.+.+..+. |...|+.....+.+.
T Consensus 125 ~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 125 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------
T ss_pred cHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccccccc
Confidence 377888888888887655 67777776666677777 57888888888877665 777777665555443
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHhcHH
Q 006744 322 ----KQFDKAYKLFEVTVQDDLAPDFSTVN 347 (632)
Q Consensus 322 ----g~~~~A~~~~~~m~~~~~~p~~~~~~ 347 (632)
+.++++++.++........ |...|+
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~-d~SaW~ 231 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPN-DQSAWF 231 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 3466677777666654332 444554
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.51 E-value=2.4e-06 Score=69.91 Aligned_cols=118 Identities=10% Similarity=-0.087 Sum_probs=76.9
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280 (632)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 280 (632)
.+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+++..+.... +...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 345667777777777777777777777776653 335666777777777777777777777777665433 556666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 006744 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321 (632)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 321 (632)
.++.+.|++++|.+.|++..+.... +...+..+...+.+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHh
Confidence 7777777777777777776654322 334445555554443
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.51 E-value=8.5e-07 Score=74.48 Aligned_cols=114 Identities=16% Similarity=0.029 Sum_probs=72.2
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006744 402 EELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481 (632)
Q Consensus 402 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~ 481 (632)
+++....+.+...+..+...+...|++++|...|++..... +.+...+..+..+|...|++++|...|+++++... .+
T Consensus 11 ~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~ 88 (148)
T 2vgx_A 11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XE 88 (148)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TC
T ss_pred HHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CC
Confidence 33333333355566667777777777777777777776643 33555666666677777777777777777766432 24
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh
Q 006744 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517 (632)
Q Consensus 482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 517 (632)
...+..+..+|...|++++|+..|+++++..+..|+
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 556666777777777777777777776654433343
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.50 E-value=1.6e-06 Score=77.16 Aligned_cols=154 Identities=12% Similarity=-0.083 Sum_probs=84.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-cCHHhHHHHHHHHHhcCChh
Q 006744 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD----LVE-ADVMAYVTLIMGLCKGGRVV 255 (632)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~ 255 (632)
.|++++|.++++.+... ......++..+...+...|++++|.+.|++..+. +.. ....++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 34555555533333221 2234556777777777777777777777766541 111 12345666666777777777
Q ss_pred HHHHHHHHHHHc----CCc--ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHccCCH
Q 006744 256 RGHELFREMKEN----GIL--IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS----GYR-ADLGIYNSIIGGLCRVKQF 324 (632)
Q Consensus 256 ~a~~~~~~m~~~----~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~ 324 (632)
+|.+.+++..+. +-. .....+..+...+...|++++|...+++.... +.. .-..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777665542 111 12334556666666677777776666665532 110 0112344555566666666
Q ss_pred HHHHHHHHHHH
Q 006744 325 DKAYKLFEVTV 335 (632)
Q Consensus 325 ~~A~~~~~~m~ 335 (632)
++|...+++..
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=2.9e-06 Score=69.06 Aligned_cols=119 Identities=9% Similarity=-0.006 Sum_probs=75.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 281 (632)
+...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+++..+.... +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence 34556666667777777777777777766543 335566666677777777777777777776665332 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 006744 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323 (632)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 323 (632)
.|...|++++|...|++..+.... +...+..+..++.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 677777777777777666665432 44555555555555554
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.48 E-value=8.2e-07 Score=74.53 Aligned_cols=99 Identities=17% Similarity=0.068 Sum_probs=72.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006744 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316 (632)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 316 (632)
+...+..+...+.+.|++++|.+.|++..+.... +...|..+..+|...|++++|+..|++..+..+. +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 3456666777777778888888888887776544 6677777777788888888888888877776544 5566777777
Q ss_pred HHHccCCHHHHHHHHHHHHhC
Q 006744 317 GLCRVKQFDKAYKLFEVTVQD 337 (632)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~ 337 (632)
+|.+.|++++|+..|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777888888888888777764
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.48 E-value=1.9e-05 Score=75.01 Aligned_cols=96 Identities=19% Similarity=0.060 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCC-CH
Q 006744 414 IYNILMGALLEIGEVKKALYLFGKMRGL----NLEV--NSLSFSIAIQCHVESGDILEACECHNKIIEMS----QVP-SV 482 (632)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~p-~~ 482 (632)
+|+.+...|...|++++|...|++..+. +..+ ...++..+...|...|++++|...+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4555555555555555555555554311 0001 11345555555555555555555555544321 111 14
Q ss_pred HhHHHHHHHHHhcCCHHHH-HHHHHHHh
Q 006744 483 AAYNCLTKGLCKIGEIDAA-MMLVRDCL 509 (632)
Q Consensus 483 ~~~~~li~~~~~~g~~~~A-~~~~~~~~ 509 (632)
.+|..+..+|.+.|++++| ...+++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4556666666666666666 55555544
No 139
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.47 E-value=5.5e-06 Score=67.19 Aligned_cols=97 Identities=13% Similarity=0.055 Sum_probs=75.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006744 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318 (632)
Q Consensus 239 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 318 (632)
..+......+.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|+..|++.++.... +...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 45667777888888888888888888776544 6777888888888888888888888888776544 567777888888
Q ss_pred HccCCHHHHHHHHHHHHhC
Q 006744 319 CRVKQFDKAYKLFEVTVQD 337 (632)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~ 337 (632)
...|++++|++.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 8888888888888887764
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.46 E-value=1.5e-06 Score=75.50 Aligned_cols=127 Identities=9% Similarity=0.066 Sum_probs=87.5
Q ss_pred hhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHH-HHHcCCH--HH
Q 006744 389 GKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC-HVESGDI--LE 465 (632)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~g~~--~~ 465 (632)
...|++++|...++...+..+.+...|..+...|...|++++|...|++..... +.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 445677777777777776666677788888888888888888888888877643 2345566666666 6677777 88
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh
Q 006744 466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517 (632)
Q Consensus 466 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 517 (632)
|...++++++... .+...+..+...|...|++++|...|+++++..+..++
T Consensus 100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 8888888777542 24666777777788888888888888887765444333
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.45 E-value=7.2e-06 Score=66.00 Aligned_cols=99 Identities=12% Similarity=0.156 Sum_probs=77.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006744 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317 (632)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 317 (632)
...+..+...+...|++++|.++++++.+.... +..++..+...+.+.|++++|..+|+++.+.... +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 466777788888888888888888888776432 5677788888888888888888888888776443 56777788888
Q ss_pred HHccCCHHHHHHHHHHHHhCC
Q 006744 318 LCRVKQFDKAYKLFEVTVQDD 338 (632)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~~ 338 (632)
|...|++++|...|+++.+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 888888888888888877653
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.45 E-value=3e-06 Score=79.98 Aligned_cols=100 Identities=14% Similarity=-0.026 Sum_probs=84.4
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHH
Q 006744 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351 (632)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 351 (632)
+...+..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+++..+... -+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4567788888999999999999999999887544 778889999999999999999999999887543 25667788888
Q ss_pred HHHhcCChhHHHHHHHHHHHCC
Q 006744 352 CCAEMGRMDNFFKLLAQMEKLK 373 (632)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~ 373 (632)
++...|++++|...+.+..+..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998877653
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.42 E-value=4.5e-06 Score=76.91 Aligned_cols=188 Identities=11% Similarity=0.006 Sum_probs=99.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCcCHHhHHHH-------HHHHHhcCChhHHHHHHHHHHHcCCccc---------------
Q 006744 215 AERNLDACLRVWEEMKKDLVEADVMAYVTL-------IMGLCKGGRVVRGHELFREMKENGILID--------------- 272 (632)
Q Consensus 215 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------- 272 (632)
..++...|.+.|.+..+.. +-....|..+ ...+.+.++..+++..++.-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4677777777777776653 2344556555 3444444444455444444333 1111
Q ss_pred -------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--H
Q 006744 273 -------RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD--F 343 (632)
Q Consensus 273 -------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~ 343 (632)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1233445566667777777777777666544 222244455556777777777777776443321 110 1
Q ss_pred hcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc--cccHHHHHHHHhhhcccHHHHHHHHHHHHhCC
Q 006744 344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV--AADLEKFFEFLVGKEERIMMALDVFEELKGKG 408 (632)
Q Consensus 344 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 408 (632)
..+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++...+
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 244555566666677777766666665432212 12233333444455555555555555555443
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.42 E-value=2.5e-06 Score=74.12 Aligned_cols=120 Identities=8% Similarity=0.059 Sum_probs=64.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH-HHhcCCH--HH
Q 006744 215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG-LVGEGKV--GK 291 (632)
Q Consensus 215 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 291 (632)
..|++++|++.|++..+.. +.+...|..+...+...|++++|...|++..+.... +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555555555554432 234455555556666666666666666665554322 44455555555 5555665 66
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337 (632)
Q Consensus 292 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (632)
|...|+++.+.... +...+..+...|...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666666554332 4455555666666666666666666666554
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.41 E-value=7.7e-06 Score=66.46 Aligned_cols=120 Identities=8% Similarity=-0.032 Sum_probs=89.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006744 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316 (632)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 316 (632)
+...+..+...+...|++++|.+.|++..+.... +...+..+...+...|++++|.+.+++..+.... +...|..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence 4556777788888888888888888888776433 6777888888888888888888888888876443 5677788888
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCCh
Q 006744 317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359 (632)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 359 (632)
.|.+.|++++|...|++..+.... +...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 888888888888888887765422 455566666666666553
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.39 E-value=1.7e-06 Score=72.54 Aligned_cols=95 Identities=11% Similarity=-0.001 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006744 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319 (632)
Q Consensus 240 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 319 (632)
.+..+...+...|++++|...|++..+.... +...|..+..+|...|++++|+..|++.....+. +...|..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 3444444455555555555555555444322 4444445555555555555555555555444322 3344444555555
Q ss_pred ccCCHHHHHHHHHHHHh
Q 006744 320 RVKQFDKAYKLFEVTVQ 336 (632)
Q Consensus 320 ~~g~~~~A~~~~~~m~~ 336 (632)
..|++++|...|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554443
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.39 E-value=6.8e-06 Score=67.12 Aligned_cols=118 Identities=10% Similarity=0.031 Sum_probs=85.2
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006744 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315 (632)
Q Consensus 236 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 315 (632)
.+...+..+...+...|++++|.+.|++..+.... +..++..+..+|...|++++|...+++..+.... +...|..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 35667777888888888888888888888776433 6777888888888888888888888888876443 567777888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhc
Q 006744 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356 (632)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 356 (632)
..|.+.|++++|.+.|++..+.... +...+..+..++...
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHh
Confidence 8888888888888888887764321 223344444444433
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.38 E-value=6e-06 Score=80.10 Aligned_cols=130 Identities=11% Similarity=-0.048 Sum_probs=92.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----------------HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD----------------VMAYVTLIMGLCKGGRVVRGHELFREMK 265 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 265 (632)
+...|..+...|.+.|++++|+..|++..+.. |+ ..+|..+..++.+.|++++|+..+++..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45678888888999999999999999888763 33 3667777777777777777777777777
Q ss_pred HcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHH-HHHHHHHH
Q 006744 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA-YKLFEVTV 335 (632)
Q Consensus 266 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 335 (632)
+.... +...|..+..+|...|++++|...|++..+.... +...+..+..++.+.|++++| ..+|..|.
T Consensus 224 ~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 224 ELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76433 5667777777777777777777777777765443 556666677777777777766 33444443
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.38 E-value=7.6e-06 Score=79.37 Aligned_cols=129 Identities=14% Similarity=0.008 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 006744 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPS--------------VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514 (632)
Q Consensus 449 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 514 (632)
.+..+...+.+.|++++|...|++.++...... ...|..+..+|.+.|++++|+..++++++..+
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p- 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS- 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 344444444455555555555555444321111 45677788888888888888888888876532
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 006744 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA-RKVFTNLR 580 (632)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 580 (632)
.+...|..+..+|...|++++|+..|+++.+.. +.+...+..+..++.+.|+.++| .++++.|.
T Consensus 228 -~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 -NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888888888888888764 55677888888888888888887 44566654
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.37 E-value=0.00033 Score=66.46 Aligned_cols=250 Identities=8% Similarity=-0.041 Sum_probs=160.0
Q ss_pred HhcCChh-HHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744 214 AAERNLD-ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR----------VVRGHELFREMKENGILIDRAIYGVLIEG 282 (632)
Q Consensus 214 ~~~g~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 282 (632)
.+.|.++ +|+++++.+...+ +-+..+|+.--.++...+. +++++.+++.+.....+ +..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4556665 8999999999764 2344556654444433332 67888899988887665 77788877777
Q ss_pred HHhcC--CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCCh
Q 006744 283 LVGEG--KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ-FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359 (632)
Q Consensus 283 ~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 359 (632)
+.+.| .+++++.+++.+.+.... |..+|+.-.-.+...|. ++++++.++++.+..+. |...|+.....+...+..
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 77777 488999999999988765 88888888777778887 58899999988877654 666776655554443221
Q ss_pred hHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-----------CCh
Q 006744 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEI-----------GEV 428 (632)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~ 428 (632)
..+- ..+ -...+.++++.+.+.......+.|..+|+-+-..+.+. +.+
T Consensus 196 ~~~~-------~~~--------------~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l 254 (331)
T 3dss_A 196 PDSG-------PQG--------------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVL 254 (331)
T ss_dssp C---------------------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHH
T ss_pred cccc-------ccc--------------ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHH
Confidence 1000 000 01124466777777777777666777777655555554 456
Q ss_pred hhHHHHHHHHhhCCCCcCH-HHHHHHH---HHHHHcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHH
Q 006744 429 KKALYLFGKMRGLNLEVNS-LSFSIAI---QCHVESGDILEACECHNKIIEMSQVPS-VAAYNCLTKGL 492 (632)
Q Consensus 429 ~~A~~~~~~m~~~~~~p~~-~t~~~ll---~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~ 492 (632)
+++++.++++.+. .||. -.+..++ .+....|..+++...+.++++.. |. ..-|.-+...+
T Consensus 255 ~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D--p~r~~~y~d~~~~~ 319 (331)
T 3dss_A 255 QSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC--GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC--cchhhHHHHHHHHH
Confidence 7888888888774 4543 1222221 12223567778888888888743 43 33445444443
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.31 E-value=5.1e-06 Score=69.09 Aligned_cols=99 Identities=13% Similarity=0.000 Sum_probs=58.9
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 006744 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490 (632)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 490 (632)
+...+..+...+.+.|++++|...|++..... +.+...+..+..++...|++++|...|++.++... .+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence 34445555666666666666666666665542 23445555556666666666666666666665432 23455556666
Q ss_pred HHHhcCCHHHHHHHHHHHhhc
Q 006744 491 GLCKIGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 491 ~~~~~g~~~~A~~~~~~~~~~ 511 (632)
+|...|++++|.+.|+++++.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666665543
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=2.4e-05 Score=62.05 Aligned_cols=99 Identities=13% Similarity=-0.037 Sum_probs=59.9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282 (632)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 282 (632)
...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|...+++..+.... +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 3445556666666677777777666665543 234555666666666666666666666666654332 45556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 006744 283 LVGEGKVGKACDLLKDLVDSG 303 (632)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~g 303 (632)
+...|++++|.+.+++..+.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 666666666666666665543
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.3e-05 Score=64.94 Aligned_cols=97 Identities=11% Similarity=-0.019 Sum_probs=61.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHH
Q 006744 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283 (632)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 283 (632)
..|..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++..+.... +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 345556666667777777777777666543 335566666666666677777777777666665433 455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 006744 284 VGEGKVGKACDLLKDLVDS 302 (632)
Q Consensus 284 ~~~g~~~~a~~~~~~m~~~ 302 (632)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666666554
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.29 E-value=2.2e-06 Score=76.19 Aligned_cols=131 Identities=12% Similarity=-0.034 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C--------------CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 006744 450 FSIAIQCHVESGDILEACECHNKIIEMSQV-P--------------SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS 514 (632)
Q Consensus 450 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p--------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 514 (632)
+..+...+...|++++|...|++.++.... + ....+..+..+|...|++++|+..++++++...
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p- 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK- 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-
Confidence 344444455555555555555555543211 1 025566667777777777777777777765422
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCC
Q 006744 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR-KVFTNLRERK 583 (632)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~ 583 (632)
.+...|..+..++...|++++|++.|++..+.. +.+..++..+..++...|+.+++. ..++.|...+
T Consensus 120 -~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 120 -NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred -ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 234455566777777777777777777776653 445666666766666666666555 4455554443
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.9e-05 Score=63.98 Aligned_cols=98 Identities=10% Similarity=-0.018 Sum_probs=76.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006744 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317 (632)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 317 (632)
...|..+...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|++..+.... +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 345667777788888888888888888776543 6778888888888888888888888888876544 56777788888
Q ss_pred HHccCCHHHHHHHHHHHHhC
Q 006744 318 LCRVKQFDKAYKLFEVTVQD 337 (632)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~ 337 (632)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888877654
No 156
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=5.5e-05 Score=76.36 Aligned_cols=167 Identities=13% Similarity=0.001 Sum_probs=98.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCC-CCcCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHh
Q 006744 415 YNILMGALLEIGEVKKALYLFGKMRGLN-LEVNSL----SFSIAIQCHVESGDILEACECHNKIIE----MSQVPS-VAA 484 (632)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~p~-~~~ 484 (632)
+..++..|...|++++|.+++..+...- ..++.. +.+.+-..+...|+.+.|..++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5667777777777777777777664421 011111 122222233345677777777766653 222222 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC--HH
Q 006744 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNV---ASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQE----GCPPN--EV 554 (632)
Q Consensus 485 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~ 554 (632)
+..+...|...|++++|..+++++.... ...+. ...|..++..|...|++++|..++++.... +.++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6677777788888888888777765321 11222 345666777777788888888877766532 11111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 555 ICSAIISGMCKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 581 (632)
++..++..+...|++++|.+.|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456666666777888888777766644
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.22 E-value=2.2e-05 Score=67.09 Aligned_cols=105 Identities=14% Similarity=0.081 Sum_probs=72.0
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 006744 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK 490 (632)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 490 (632)
+...|..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|...|++.++... .+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 44556677777777777777777777776643 33556666777777777777777777777776542 24666777777
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCh
Q 006744 491 GLCKIGEIDAAMMLVRDCLGNVASGPT 517 (632)
Q Consensus 491 ~~~~~g~~~~A~~~~~~~~~~~~~~p~ 517 (632)
+|...|++++|+..|+++++..+..++
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 777777777777777777765444444
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.22 E-value=1.9e-05 Score=70.00 Aligned_cols=124 Identities=11% Similarity=0.016 Sum_probs=74.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-cC--------------HHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006744 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE-AD--------------VMAYVTLIMGLCKGGRVVRGHELFREMKEN 267 (632)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 267 (632)
...+..+...+.+.|++++|++.|++..+..-. ++ ...|..+..++...|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344666777788889999999999888765311 10 145556666666666666666666666655
Q ss_pred CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 006744 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328 (632)
Q Consensus 268 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 328 (632)
... +...+..+..+|...|++++|...|++..+.... +...+..+..++...++.+++.
T Consensus 118 ~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 DKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp STT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred Ccc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 322 4556666666666666666666666666654332 4445555555555555444444
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.21 E-value=1.4e-05 Score=66.31 Aligned_cols=98 Identities=9% Similarity=-0.115 Sum_probs=69.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282 (632)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 282 (632)
...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|++..+.+.. +...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 3445556666777778888887777776653 345666777777777777777777777777776543 55667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 006744 283 LVGEGKVGKACDLLKDLVDS 302 (632)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~ 302 (632)
|...|++++|...|+...+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777654
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.20 E-value=3.4e-05 Score=62.56 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhh
Q 006744 415 YNILMGALLEIGEVKKALYLFGKMRG 440 (632)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~m~~ 440 (632)
+..+...+.+.|++++|+..|++..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~ 36 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE 36 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 161
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=7.7e-05 Score=75.26 Aligned_cols=97 Identities=8% Similarity=-0.038 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC-CC-C--
Q 006744 413 PIYNILMGALLEIGEVKKALYLFGKMRGL----NLEV-NSLSFSIAIQCHVESGDILEACECHNKIIEM--SQ-VP-S-- 481 (632)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~-~p-~-- 481 (632)
.++..+...|...|++++|..++++.... +-.+ ...++..++..|...|++++|..++++.... .. .| .
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 34555666666666666666666554332 1011 1234555555666666666666666555432 11 11 1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
...+..+...+...|++++|...|.+..
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2334444555556666666666655554
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=6.2e-05 Score=62.65 Aligned_cols=100 Identities=12% Similarity=-0.078 Sum_probs=73.6
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhH
Q 006744 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD----VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY 276 (632)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 276 (632)
.+...+..+...+...|++++|++.|++..+. .|+ ...|..+..++...|++++|.+.+++..+.... +...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 35667777778888888888888888887765 344 566777777777888888888888777765433 56677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 277 GVLIEGLVGEGKVGKACDLLKDLVDSG 303 (632)
Q Consensus 277 ~~li~~~~~~g~~~~a~~~~~~m~~~g 303 (632)
..+..+|...|++++|...|++..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 777777777788888888777777653
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.19 E-value=5.8e-05 Score=59.79 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=75.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006744 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317 (632)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 317 (632)
...+..+...+...|++++|.+.|++..+.... +...+..+..++...|++++|...+++..+.... +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 456667777788888888888888888776433 6677777888888888888888888888776443 56677777888
Q ss_pred HHccCCHHHHHHHHHHHHhCC
Q 006744 318 LCRVKQFDKAYKLFEVTVQDD 338 (632)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~~ 338 (632)
+...|++++|...+++..+.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 888888888888888777643
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.17 E-value=3.2e-05 Score=66.02 Aligned_cols=95 Identities=6% Similarity=-0.024 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006744 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319 (632)
Q Consensus 240 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 319 (632)
.+..+...+...|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|++..+.... +...|..+..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3444444444444555555554444443222 3444444555555555555555555555444322 3444555555555
Q ss_pred ccCCHHHHHHHHHHHHh
Q 006744 320 RVKQFDKAYKLFEVTVQ 336 (632)
Q Consensus 320 ~~g~~~~A~~~~~~m~~ 336 (632)
+.|++++|+..|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555443
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.16 E-value=1.4e-05 Score=67.68 Aligned_cols=99 Identities=14% Similarity=0.005 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHH
Q 006744 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP----TEFKYALTILHVCRSGEAEKIIEVLNEMTQE----GCP-PNEV 554 (632)
Q Consensus 484 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~ 554 (632)
++..+...+...|++++|.+.+++.+....... ....+..+...+...|++++|++.+++..+. +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344445555555555555555555442211111 1223444555555666666666666555432 111 1134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 555 ICSAIISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
++..+..++...|++++|.+.+++..+.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5667777888888888888888777653
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.16 E-value=2.4e-05 Score=61.40 Aligned_cols=101 Identities=10% Similarity=-0.012 Sum_probs=74.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHH
Q 006744 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP--NEVICSAI 559 (632)
Q Consensus 482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~l 559 (632)
...+..+...+...|++++|+..|+++++... .+...|..+...+...|++++|++.+++..+.. +. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44566677777788888888888887776532 234556667777778888888888888887763 44 57788888
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCCCC
Q 006744 560 ISGMCKH-GTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 560 ~~~~~~~-g~~~~A~~~~~~m~~~~~~ 585 (632)
..++.+. |++++|.+.+++..+.+..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 8888888 8888888888888776643
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.15 E-value=4.7e-05 Score=62.51 Aligned_cols=96 Identities=7% Similarity=-0.058 Sum_probs=43.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006744 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG 317 (632)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 317 (632)
...|..+...+...|++++|...|++..+.... +...|..+..++...|++++|...+++..+.... +...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 334444444444444444444444444443222 3344444444444444444444444444443322 33444444444
Q ss_pred HHccCCHHHHHHHHHHHH
Q 006744 318 LCRVKQFDKAYKLFEVTV 335 (632)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~ 335 (632)
|...|++++|+..|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 444555555554444443
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.14 E-value=4.8e-05 Score=61.65 Aligned_cols=98 Identities=6% Similarity=0.028 Sum_probs=62.0
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCc--cc----HHhHH
Q 006744 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL--ID----RAIYG 277 (632)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~----~~~~~ 277 (632)
.++..+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|++.+++.++.+.. .+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 446666777777777777777777776653 335666777777777777777777777776653211 01 12455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 278 VLIEGLVGEGKVGKACDLLKDLVDS 302 (632)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~ 302 (632)
.+..++...|++++|++.|++....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5556666666666666666665543
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.12 E-value=5.5e-05 Score=62.08 Aligned_cols=100 Identities=10% Similarity=-0.083 Sum_probs=88.7
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280 (632)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 280 (632)
.+...|..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...+++..+.+.. +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 467888999999999999999999999988764 446788999999999999999999999999987644 678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 006744 281 EGLVGEGKVGKACDLLKDLVDS 302 (632)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~m~~~ 302 (632)
.+|...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999998864
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.11 E-value=3.7e-05 Score=60.31 Aligned_cols=100 Identities=16% Similarity=0.114 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHhHHHHH
Q 006744 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PSVAAYNCLT 489 (632)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li 489 (632)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.... .+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 33445555555666666666666666555432 223444455555555555555555555555543211 0344455555
Q ss_pred HHHHhc-CCHHHHHHHHHHHhhc
Q 006744 490 KGLCKI-GEIDAAMMLVRDCLGN 511 (632)
Q Consensus 490 ~~~~~~-g~~~~A~~~~~~~~~~ 511 (632)
.++... |++++|.+.+++++..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 555555 5555555555555443
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.09 E-value=3e-05 Score=62.90 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=61.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCc--cc----HHhHH
Q 006744 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL--ID----RAIYG 277 (632)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~----~~~~~ 277 (632)
..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 445666666777777777777777766543 335566666667777777777777777766654221 11 44556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 278 VLIEGLVGEGKVGKACDLLKDLVDS 302 (632)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~ 302 (632)
.+..+|...|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666666666666666666666654
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=2.4e-05 Score=66.22 Aligned_cols=134 Identities=10% Similarity=0.040 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-cC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C----CH
Q 006744 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLE-VN----SLSFSIAIQCHVESGDILEACECHNKIIEMSQV-P----SV 482 (632)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p----~~ 482 (632)
.++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+.... . ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35666777777777777777777766543100 11 135666677777788888888887776643111 1 14
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744 483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNV---ASG-PTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546 (632)
Q Consensus 483 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 546 (632)
..+..+...+...|++++|.+.+++.++.. +.. .....+..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456677778888888888888888776431 111 1134466677778888999999988887664
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.06 E-value=3.7e-05 Score=61.67 Aligned_cols=91 Identities=12% Similarity=0.001 Sum_probs=40.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcC
Q 006744 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287 (632)
Q Consensus 208 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 287 (632)
.+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..+|...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 33344444445555555444444432 223444444444444444444444444444443322 3334444444444444
Q ss_pred CHHHHHHHHHHHH
Q 006744 288 KVGKACDLLKDLV 300 (632)
Q Consensus 288 ~~~~a~~~~~~m~ 300 (632)
++++|+..|++..
T Consensus 100 ~~~~A~~~~~~al 112 (121)
T 1hxi_A 100 NANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444444
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.05 E-value=3.4e-05 Score=61.88 Aligned_cols=96 Identities=9% Similarity=-0.021 Sum_probs=76.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006744 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC 319 (632)
Q Consensus 240 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 319 (632)
.+..+...+.+.|++++|...|++..+.... +...|..+..++...|++++|+..|++..+..+. +...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3455667778888888888888888886544 6778888888888888888888888888887554 6677888888888
Q ss_pred ccCCHHHHHHHHHHHHhC
Q 006744 320 RVKQFDKAYKLFEVTVQD 337 (632)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~ 337 (632)
+.|++++|+..|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888887754
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=9.1e-05 Score=61.59 Aligned_cols=99 Identities=14% Similarity=0.044 Sum_probs=64.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006744 481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT----EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556 (632)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 556 (632)
+...+..+...+...|++++|+..|++.++. .|+ ...|..+...+...|++++|+..+++..+.. +.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 3455566666666667777777777666643 233 4455556666667777777777777766653 3456667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 557 SAIISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 557 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
..+..++...|++++|.+.|++..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 777777777777777777777777654
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.05 E-value=4.1e-05 Score=62.05 Aligned_cols=99 Identities=12% Similarity=0.143 Sum_probs=73.9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HhhH
Q 006744 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR--AD----LGIY 311 (632)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~----~~~~ 311 (632)
...+..+...+...|++++|...|++..+.... +...+..+...|...|++++|...+++....... ++ ..+|
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 345667777888888888888888888776433 6677778888888888888888888887765321 11 5567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744 312 NSIIGGLCRVKQFDKAYKLFEVTVQD 337 (632)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (632)
..+...|.+.|++++|.+.|++..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77778888888888888888877764
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.99 E-value=2.1e-05 Score=62.72 Aligned_cols=96 Identities=11% Similarity=0.031 Sum_probs=54.4
Q ss_pred cCChhhHHHHHHHHhhCC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 006744 425 IGEVKKALYLFGKMRGLN--LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502 (632)
Q Consensus 425 ~g~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 502 (632)
.|++++|+..|++..+.+ -+-+...+..+..+|...|++++|...|++.++... -+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 456666666676666542 122334555566666666777777777666666432 23556666666677777777777
Q ss_pred HHHHHHhhcCCCCChHHHH
Q 006744 503 MLVRDCLGNVASGPTEFKY 521 (632)
Q Consensus 503 ~~~~~~~~~~~~~p~~~~~ 521 (632)
..+++.+...+..|+...|
T Consensus 82 ~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHH
Confidence 7777666554444443333
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.95 E-value=0.00027 Score=57.12 Aligned_cols=93 Identities=14% Similarity=0.015 Sum_probs=53.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcCH---HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccc---HHhHHHHHH
Q 006744 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADV---MAYVTLIMGLCKGGRVVRGHELFREMKENGILID---RAIYGVLIE 281 (632)
Q Consensus 208 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~ 281 (632)
.+...+...|++++|.+.|++..+.. +.+. ..+..+..++...|++++|...|+++.+.... + ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence 34445566666666666666665542 1122 35555566666666666666666666654322 2 444555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 006744 282 GLVGEGKVGKACDLLKDLVDS 302 (632)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~ 302 (632)
++.+.|++++|...|+++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666654
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.91 E-value=2.7e-05 Score=79.38 Aligned_cols=122 Identities=10% Similarity=-0.029 Sum_probs=88.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcC
Q 006744 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287 (632)
Q Consensus 208 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 287 (632)
.+...+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+.... +...|..+..+|...|
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 33445667888888888888877753 345778888888888888888888888888887543 6778888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHccCCHHHHHHHHH
Q 006744 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGG--LCRVKQFDKAYKLFE 332 (632)
Q Consensus 288 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 332 (632)
++++|++.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888888876443 34455555555 778888888888887
No 180
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.91 E-value=0.00033 Score=72.75 Aligned_cols=170 Identities=11% Similarity=-0.032 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC-
Q 006744 184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN----------LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG- 252 (632)
Q Consensus 184 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g- 252 (632)
.++|++.++++.+.++. +..+|+.--..+...|+ ++++++.++.+.+.. +-+..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 35667777777765433 56678777777777776 889999999988765 457778888888888888
Q ss_pred -ChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc---------
Q 006744 253 -RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG-KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV--------- 321 (632)
Q Consensus 253 -~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------- 321 (632)
+++++++.++++.+.... +..+|+.-...+.+.| ..+++++.++++.+..+. |..+|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 669999999999988766 7888888877888888 888999999998887765 778888777666553
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCC
Q 006744 322 -----KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358 (632)
Q Consensus 322 -----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 358 (632)
+.++++++++++....... |...|...-..+.+.+.
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 4567788888777765432 45566655555555444
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.89 E-value=0.00013 Score=74.05 Aligned_cols=123 Identities=9% Similarity=-0.064 Sum_probs=67.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----------------HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD----------------VMAYVTLIMGLCKGGRVVRGHELFREMK 265 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 265 (632)
....|..+...|.+.|++++|+..|++..+.. |+ ...|..+..+|.+.|++++|+..+++..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34567778888888999999999998877642 22 2445555555555555555555555555
Q ss_pred HcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 006744 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY 328 (632)
Q Consensus 266 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 328 (632)
+.... +...|..+..+|...|++++|+..|++..+.... +...+..+..++.+.++.+++.
T Consensus 345 ~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 345 GLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 54322 3444555555555555555555555555544322 3334444444444444444443
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.89 E-value=0.00064 Score=54.78 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 556 CSAIISGMCKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 581 (632)
+..+..++...|++++|.+.|+++.+
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333344444444444444333
No 183
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.89 E-value=0.00019 Score=59.43 Aligned_cols=95 Identities=14% Similarity=0.038 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CC
Q 006744 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGP----------TEFKYALTILHVCRSGEAEKIIEVLNEMTQE-------GC 549 (632)
Q Consensus 487 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------g~ 549 (632)
.....+.+.|++++|+..|++.++..+..| +...|..+..++.+.|++++|+..+++.++. .
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~- 94 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN- 94 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-
Confidence 344445555555555555555554322211 1225666666677777777777777766664 3
Q ss_pred CCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 550 PPNEVIC----SAIISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 550 ~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
+.+...| .....++...|++++|+..|++.++.
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3345577 88899999999999999999999775
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.88 E-value=0.00012 Score=71.80 Aligned_cols=120 Identities=10% Similarity=0.029 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC--------------C-CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006744 205 AYTAMIRVLAAERNLDACLRVWEEMKKDL--------------V-EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI 269 (632)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------------~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 269 (632)
.|..+...+.+.|++++|++.|++..+.- . +.+...|..+..+|.+.|++++|++.+++..+...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 46677778888899999998888876510 0 11233444445555555555555555555554332
Q ss_pred cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHH
Q 006744 270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326 (632)
Q Consensus 270 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 326 (632)
. +...|..+..+|...|++++|++.|++..+.... +...+..+...+.+.++.++
T Consensus 305 ~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 305 S-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 2 3444445555555555555555555555443222 33344444444444443333
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.84 E-value=0.00027 Score=71.59 Aligned_cols=153 Identities=15% Similarity=0.055 Sum_probs=110.5
Q ss_pred CChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHhHHHHHHH
Q 006744 426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS--------------VAAYNCLTKG 491 (632)
Q Consensus 426 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~--------------~~~~~~li~~ 491 (632)
+++++|...|+...... .-....+..+...+.+.|++++|...|+++++...... ...|..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554332211 12345677888889999999999999999988543221 5788889999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006744 492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE 571 (632)
Q Consensus 492 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 571 (632)
|.+.|++++|+..++++++... .+...|..+..+|...|++++|+..|+++.+.. +.+...+..+..++.+.|+.++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDS--ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987643 345667778899999999999999999999874 4566788888888888888887
Q ss_pred HHH-HHHHHHHC
Q 006744 572 ARK-VFTNLRER 582 (632)
Q Consensus 572 A~~-~~~~m~~~ 582 (632)
|.+ +++.|..+
T Consensus 404 a~~~~~~~~f~k 415 (457)
T 1kt0_A 404 RDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHhh
Confidence 764 45555443
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.84 E-value=5.6e-05 Score=77.04 Aligned_cols=118 Identities=12% Similarity=-0.029 Sum_probs=91.3
Q ss_pred HhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 006744 387 LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466 (632)
Q Consensus 387 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 466 (632)
.+.+.|++++|.+.|++..+..+.+..+|..+..+|.+.|++++|+..+++..+.. +-+...+..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 35677888888888888888777788899999999999999999999999998864 44567788888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHH
Q 006744 467 CECHNKIIEMSQVPSVAAYNCLTKG--LCKIGEIDAAMMLVR 506 (632)
Q Consensus 467 ~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 506 (632)
.+.|+++.+.... +...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999998876422 34455555555 788899999999988
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.83 E-value=0.00082 Score=69.79 Aligned_cols=191 Identities=5% Similarity=-0.083 Sum_probs=132.1
Q ss_pred hcCC-hhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCcccHHhHHHHHHHH
Q 006744 215 AERN-LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR----------VVRGHELFREMKENGILIDRAIYGVLIEGL 283 (632)
Q Consensus 215 ~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 283 (632)
+.|. .++|++.++++.+.+ +-+..+|+.--.++...|+ ++++++.++.+.+...+ +..+|+.-.-.+
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3444 457788888888764 3345667766666666666 78888888888887665 777787777777
Q ss_pred HhcC--CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChh
Q 006744 284 VGEG--KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK-QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360 (632)
Q Consensus 284 ~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 360 (632)
.+.| +++++++.++++.+.... +..+|+.-...+.+.| .++++++.++++.+.... |...|+.....+.+.+...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccc
Confidence 7888 668888888888887665 7778887777777777 788888888887766544 6666666555554432210
Q ss_pred HHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhh
Q 006744 361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKK 430 (632)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 430 (632)
.+ +.. . -...+.++++.+.+.+....++.+..+|+.+-..+.+.++.++
T Consensus 196 ~~----------~~~--~---------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DS----------GPQ--G---------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CS----------SSC--C---------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cc----------ccc--c---------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 00 000 0 0112567888888888888877788899998888888777544
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.82 E-value=5e-05 Score=60.48 Aligned_cols=84 Identities=13% Similarity=0.027 Sum_probs=40.7
Q ss_pred CChhHHHHHHHHHHHcC--CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 006744 252 GRVVRGHELFREMKENG--ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK 329 (632)
Q Consensus 252 g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 329 (632)
|++++|+..|++..+.+ -+-+..++..+..+|...|++++|+..|++..+..+. +..++..+..++.+.|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555555555432 1113344555555555555555555555555554333 34445555555555555555555
Q ss_pred HHHHHHh
Q 006744 330 LFEVTVQ 336 (632)
Q Consensus 330 ~~~~m~~ 336 (632)
.|++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.80 E-value=0.00014 Score=61.89 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=60.7
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CC----------CcCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 006744 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKD-------LV----------EADVMAYVTLIMGLCKGGRVVRGHELFREMK 265 (632)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 265 (632)
...+......+.+.|++++|++.|++..+. .- +.+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345667777788888888888888877653 00 1122455555566666666666666666665
Q ss_pred HcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302 (632)
Q Consensus 266 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (632)
+.+.. +...|..+..+|...|++++|...|++....
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54332 4555666666666666666666666665554
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.77 E-value=0.00016 Score=73.19 Aligned_cols=133 Identities=11% Similarity=0.027 Sum_probs=70.1
Q ss_pred HHHhcCChhhHHHHHHHHhhCC---CCc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHhHH
Q 006744 421 ALLEIGEVKKALYLFGKMRGLN---LEV----NSLSFSIAIQCHVESGDILEACECHNKIIEM-----SQ-VPS-VAAYN 486 (632)
Q Consensus 421 ~~~~~g~~~~A~~~~~~m~~~~---~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~-~~~~~ 486 (632)
.+...|++++|+.++++..+.. +.+ ...+++.+..+|...|++++|..++++.++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3445677777776666554321 111 1234555666666666666666666555431 11 122 34455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006744 487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566 (632)
Q Consensus 487 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 566 (632)
.|...|...|++++|+.++++++ ++++...-.+.+....+...+..++...
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al-----------------------------~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 448 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAY-----------------------------AILLVTHGPSHPITKDLEAMRMQTEMEL 448 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-----------------------------HHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH-----------------------------HHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 66666666666666666665432 2222221111111223445555666677
Q ss_pred CCHHHHHHHHHHHHHC
Q 006744 567 GTLEEARKVFTNLRER 582 (632)
Q Consensus 567 g~~~~A~~~~~~m~~~ 582 (632)
|.+++|..++..+++.
T Consensus 449 ~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 449 RMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777777664
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.77 E-value=0.00032 Score=59.54 Aligned_cols=99 Identities=9% Similarity=0.032 Sum_probs=75.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHc--------CC---------cccHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744 238 VMAYVTLIMGLCKGGRVVRGHELFREMKEN--------GI---------LIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300 (632)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 300 (632)
...+......+.+.|++++|+..|.+..+. .. ..+..+|..+..+|.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777888889999999999999988764 10 1134567777888888888888888888887
Q ss_pred HCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337 (632)
Q Consensus 301 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (632)
+.... +...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 76543 6677777888888888888888888877764
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.76 E-value=8.3e-05 Score=72.05 Aligned_cols=149 Identities=11% Similarity=-0.049 Sum_probs=72.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHH
Q 006744 204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283 (632)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 283 (632)
..|..+...+.+.|++++|+..|++..+. .|+... +...++.+++...+ ....|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 44666777788889999999999887764 243321 11223333332221 112566677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHH-HHhcCChhHH
Q 006744 284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC-CAEMGRMDNF 362 (632)
Q Consensus 284 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a 362 (632)
.+.|++++|+..+++..+.... +...|..+..+|...|++++|+..|++..+.... +...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777765433 5667777777777777777777777776543211 22233333333 2234455666
Q ss_pred HHHHHHHHHCC
Q 006744 363 FKLLAQMEKLK 373 (632)
Q Consensus 363 ~~~~~~~~~~~ 373 (632)
...|..+....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 66776665543
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.74 E-value=0.0003 Score=68.92 Aligned_cols=98 Identities=7% Similarity=-0.074 Sum_probs=65.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHc---------------CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 239 MAYVTLIMGLCKGGRVVRGHELFREMKEN---------------GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG 303 (632)
Q Consensus 239 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 303 (632)
..+..+...+.+.|++++|++.|++..+. --..+..+|..+..+|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 34667788889999999999999988762 011134556666666666777777777776666654
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744 304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD 337 (632)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (632)
.. +...|..+..+|...|++++|+..|++..+.
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 32 4556666666666666676666666666554
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.67 E-value=0.00057 Score=56.62 Aligned_cols=61 Identities=16% Similarity=0.068 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHhhH----HHHHHHHHccCCHHHHHHHHHHHHh
Q 006744 275 IYGVLIEGLVGEGKVGKACDLLKDLVDS-------GYRADLGIY----NSIIGGLCRVKQFDKAYKLFEVTVQ 336 (632)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 336 (632)
.|..+..++.+.|++++|+..+++.++. ... +...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666666666666666666666553 322 34455 6666777777777777777776653
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.66 E-value=0.0017 Score=53.21 Aligned_cols=112 Identities=9% Similarity=-0.085 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH----cCCHHH
Q 006744 461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR----SGEAEK 536 (632)
Q Consensus 461 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 536 (632)
++.++|.++|++..+.| .++.. |...|...+.+++|++.|++..+. -+...+..|...|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 34566666666666655 22222 555555666666677777766553 233444456666665 567777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 006744 537 IIEVLNEMTQEGCPPNEVICSAIISGMCK----HGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 537 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 584 (632)
|+++|++..+.| +...+..|...|.. .++.++|.++|++..+.|.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 777777777765 56666677777777 6777788888777777764
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.60 E-value=0.00033 Score=70.94 Aligned_cols=89 Identities=10% Similarity=0.052 Sum_probs=57.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-----CCC-C-CHhhHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC-CCC-HhcHH
Q 006744 282 GLVGEGKVGKACDLLKDLVDS-----GYR-A-DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD-----DL-APD-FSTVN 347 (632)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~-----g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~-~~~~~ 347 (632)
.+...|++++|+.++++..+. |.. | ...+++.|...|...|++++|+.++++.++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888776642 211 1 2346778888888888888888888776532 21 122 24566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 006744 348 PLLVCCAEMGRMDNFFKLLAQME 370 (632)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~ 370 (632)
.|...|...|++++|+.++++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777777777777766543
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.54 E-value=0.0029 Score=51.80 Aligned_cols=86 Identities=13% Similarity=0.035 Sum_probs=37.5
Q ss_pred HHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHH--
Q 006744 386 FLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE----IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE-- 459 (632)
Q Consensus 386 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~-- 459 (632)
.+|...+.+++|.+.|++..+.+ +...+..|...|.. .+++++|+..|++..+.| +...+..+...|..
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGK 107 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCC
Confidence 33333344444444444444433 34444444444444 444455555554444433 23333333334443
Q ss_pred --cCCHHHHHHHHHHHHHC
Q 006744 460 --SGDILEACECHNKIIEM 476 (632)
Q Consensus 460 --~g~~~~a~~~~~~~~~~ 476 (632)
.++.++|.++|++..+.
T Consensus 108 g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHC
Confidence 34444444444444443
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.51 E-value=0.00036 Score=67.52 Aligned_cols=151 Identities=11% Similarity=0.029 Sum_probs=85.5
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006744 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318 (632)
Q Consensus 239 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 318 (632)
..+..+...+.+.|++++|...|++..+.. |+... +...|+.+++...+ ....|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 456677788888999999999999887753 33221 22334444443322 123788899999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHH-hhhcccHHHH
Q 006744 319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL-VGKEERIMMA 397 (632)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a 397 (632)
.+.|++++|+..+++..+... -+...|..+..+|...|++++|...|+++.+.... +......+..+ ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987642 36678888999999999999999999998776543 33444444444 3456777888
Q ss_pred HHHHHHHHhCCCC
Q 006744 398 LDVFEELKGKGYS 410 (632)
Q Consensus 398 ~~~~~~~~~~~~~ 410 (632)
..+|..+....+.
T Consensus 319 ~~~~~~~l~~~p~ 331 (338)
T 2if4_A 319 KEMYKGIFKGKDE 331 (338)
T ss_dssp -------------
T ss_pred HHHHHHhhCCCCC
Confidence 8899888766543
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.00013 Score=57.21 Aligned_cols=64 Identities=9% Similarity=0.084 Sum_probs=37.4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006744 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267 (632)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 267 (632)
...|..+...+...|++++|++.|++..+.. +.+...|..+..++...|++++|++.+++..+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445555566666666666666666655542 234555555666666666666666666666554
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.37 E-value=0.0012 Score=51.92 Aligned_cols=77 Identities=13% Similarity=-0.025 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006744 257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335 (632)
Q Consensus 257 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 335 (632)
|++.|++..+.... +...+..+...|...|++++|+..|++..+.... +...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444443222 3444444444555555555555555554443322 33444445555555555555555554443
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00025 Score=55.39 Aligned_cols=64 Identities=11% Similarity=0.014 Sum_probs=38.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302 (632)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (632)
...+..+...+...|++++|.+.|++..+.... +...+..+..+|.+.|++++|++.|++..+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344555566666666666666666666654332 4555666666666666666666666666654
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.35 E-value=0.0014 Score=51.64 Aligned_cols=78 Identities=13% Similarity=0.081 Sum_probs=48.2
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475 (632)
Q Consensus 397 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 475 (632)
|...|++..+..+.+...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555566666667777777777777777776666543 23344555666666666666666666666654
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.34 E-value=0.0019 Score=47.94 Aligned_cols=79 Identities=11% Similarity=0.037 Sum_probs=43.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282 (632)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 282 (632)
...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.|++..+.... +...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3445555566666666666666666655442 224455555566666666666666666665554322 34444444444
Q ss_pred H
Q 006744 283 L 283 (632)
Q Consensus 283 ~ 283 (632)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.31 E-value=0.0023 Score=47.53 Aligned_cols=78 Identities=12% Similarity=0.066 Sum_probs=42.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006744 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL 318 (632)
Q Consensus 239 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 318 (632)
..+..+...+...|++++|.+.|++..+.... +..++..+..++.+.|++++|...|++..+.... +...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 44555555566666666666666666554322 4455555556666666666666666665554322 334444444443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.22 E-value=0.001 Score=54.98 Aligned_cols=86 Identities=9% Similarity=-0.019 Sum_probs=55.1
Q ss_pred hhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh----------hHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 006744 389 GKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVK----------KALYLFGKMRGLNLEVNSLSFSIAIQCHV 458 (632)
Q Consensus 389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----------~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 458 (632)
.+.+.+++|.+.++...+.++.+...|+.+..++...++++ +|+..|++..+.. +-+...|..+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 34566788888888888887778888888888888877654 5666666655532 223345555555555
Q ss_pred HcC-----------CHHHHHHHHHHHHH
Q 006744 459 ESG-----------DILEACECHNKIIE 475 (632)
Q Consensus 459 ~~g-----------~~~~a~~~~~~~~~ 475 (632)
..| ++++|.+.|++.++
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 443 55555555555555
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.21 E-value=0.00072 Score=55.88 Aligned_cols=109 Identities=13% Similarity=-0.002 Sum_probs=55.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHH
Q 006744 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293 (632)
Q Consensus 214 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 293 (632)
.+.+.+++|++.++...+.. +.+...|..+..++...++++.+...++ .+++|+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eAi 66 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEAI 66 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHh-------------------------HHHHHH
Confidence 34455566666666655543 3355555555555555554431111110 134555
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHcc-----------CCHHHHHHHHHHHHhCCCCCCHhcHHHHHH
Q 006744 294 DLLKDLVDSGYRADLGIYNSIIGGLCRV-----------KQFDKAYKLFEVTVQDDLAPDFSTVNPLLV 351 (632)
Q Consensus 294 ~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 351 (632)
..|++.++..+. +..+|..+..+|... |++++|++.|++..+. .|+...|...+.
T Consensus 67 ~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 67 TKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 555555554433 444555555555544 3677777777766653 455444444433
No 207
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.13 E-value=0.091 Score=57.49 Aligned_cols=129 Identities=13% Similarity=0.051 Sum_probs=83.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 006744 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIG 426 (632)
Q Consensus 347 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 426 (632)
..++..+.+.|..+.|.++.+.. ..-.......|++++|.++.+.+ .+...|..+...+.+.|
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcC
Confidence 45555666666666666554211 01122345668888888775433 36778999999999999
Q ss_pred ChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006744 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506 (632)
Q Consensus 427 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 506 (632)
+++.|.+.|.++.. |..+...+...|+.+...++-+.....|. ++....+|.+.|++++|++++.
T Consensus 696 ~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 696 NFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp CHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988754 44555556667777776666665555442 3445555667777777777765
Q ss_pred H
Q 006744 507 D 507 (632)
Q Consensus 507 ~ 507 (632)
+
T Consensus 761 ~ 761 (814)
T 3mkq_A 761 K 761 (814)
T ss_dssp H
T ss_pred H
Confidence 5
No 208
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.02 E-value=0.047 Score=42.69 Aligned_cols=135 Identities=12% Similarity=0.109 Sum_probs=62.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh---cHHHHHHHHHhcCChhH
Q 006744 285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS---TVNPLLVCCAEMGRMDN 361 (632)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~ 361 (632)
-.|.+++..++..+..+. -+..-||.+|--....-+-+-..++++.+-+. .|.. -...++.+|.+.+..
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~C~NlKrVi~C~~~~n~~-- 90 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINNTL-- 90 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTTCC--
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcHhhhcHHHHHHHHHHhcch--
Confidence 356666666666666554 24445555555555555555555555554331 1111 123445555544432
Q ss_pred HHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 006744 362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441 (632)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 441 (632)
.......+..+...|+-++..+++..+.....+++...-.+..+|.+.|+..+|.+++.+..+.
T Consensus 91 ----------------se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 91 ----------------NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp ----------------CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----------------HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 1222222333334444444444444433333334444444555555555555555555555554
Q ss_pred CC
Q 006744 442 NL 443 (632)
Q Consensus 442 ~~ 443 (632)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 43
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.00 E-value=0.0028 Score=48.36 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 448 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
..+..+..++...|++++|...|+++++... .+...|..+..+|...|++++|++.|++.+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444455555555555555555554331 123445555555555555555555555543
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.99 E-value=0.0035 Score=47.84 Aligned_cols=62 Identities=11% Similarity=-0.022 Sum_probs=31.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT 545 (632)
Q Consensus 482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 545 (632)
...+..+..+|...|++++|+..|+++++..+..+ ..|..+..+|...|++++|++.+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV--GTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555555555554432222 234444555555555555555555443
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.78 E-value=0.0084 Score=59.55 Aligned_cols=50 Identities=8% Similarity=-0.145 Sum_probs=35.4
Q ss_pred cCCHHHHHHHHHHHHHC---CCC---CC-HHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 460 SGDILEACECHNKIIEM---SQV---PS-VAAYNCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 460 ~g~~~~a~~~~~~~~~~---~~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
.|++++|..++++.++. -+- |+ ..+++.|..+|...|++++|+.++++++
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 367 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII 367 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 46777787777776642 111 22 4667888888888999999988887754
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.64 E-value=0.015 Score=57.86 Aligned_cols=54 Identities=9% Similarity=0.097 Sum_probs=32.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC---CCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 456 CHVESGDILEACECHNKIIEMS---QVPS----VAAYNCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 456 ~~~~~g~~~~a~~~~~~~~~~~---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
.+...|++++|..++++.++.. +.++ ..+++.|..+|...|++++|+.++++++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3445666677777766666431 1111 4456667777777777777777776543
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.59 E-value=0.13 Score=56.28 Aligned_cols=123 Identities=12% Similarity=0.110 Sum_probs=71.8
Q ss_pred HHhcCChhHHHH-HHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHH
Q 006744 213 LAAERNLDACLR-VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK 291 (632)
Q Consensus 213 ~~~~g~~~~A~~-~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 291 (632)
....+++++|.+ ++..+ ++......++..+.+.|..++|+++.+.-. .-.......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence 345677777766 44211 112223666666777777777776653211 11234456778888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHH
Q 006744 292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ 368 (632)
Q Consensus 292 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 368 (632)
|.++.+.+ .+...|..|...+.+.|+++.|++.|..+.. |..+...+...|+.+...++.+.
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 87775433 2567788888888888888888888876642 34445555555655554444333
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.55 E-value=0.092 Score=50.03 Aligned_cols=69 Identities=9% Similarity=0.013 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744 515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 585 (632)
..+...|..+...+...|++++|+..++++...+ |+...|..+...+.-.|++++|.+.+++....+..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4566777777777777788888888888888875 77777778888888889999999888888887653
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.49 E-value=0.067 Score=50.94 Aligned_cols=63 Identities=10% Similarity=-0.006 Sum_probs=28.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744 482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547 (632)
Q Consensus 482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 547 (632)
..+|..+...+...|++++|+..+++++... |+...|..+...+...|++++|++.++++...
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4444444444444445555555554444331 34444444444444445555555555444443
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.48 E-value=0.015 Score=43.85 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=30.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEV-ICSAIISGMCKHGTLEEARKVFTNLRERK 583 (632)
Q Consensus 527 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 583 (632)
.+...|++++|++.++++.+.. +.+.. .|..+..+|...|++++|.+.|++..+.+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444555555555555555442 33444 55555555666666666666666665554
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.38 E-value=0.064 Score=39.91 Aligned_cols=68 Identities=18% Similarity=0.094 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744 517 TEFKYALTILHVCRSGE---AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 517 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 585 (632)
+...+..+..++...++ .++|..++++..+.. +.+......+...+.+.|++++|+.+|+++.+.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 33444445555544433 567777777777664 556667777777777888888888888888777654
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.37 E-value=0.035 Score=55.13 Aligned_cols=91 Identities=16% Similarity=0.052 Sum_probs=69.7
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCC---CCcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHh
Q 006744 419 MGALLEIGEVKKALYLFGKMRGLN---LEVN----SLSFSIAIQCHVESGDILEACECHNKIIEM-----SQ-VPS-VAA 484 (632)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~m~~~~---~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~-~~~ 484 (632)
+..+.+.|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|..+++++++. |. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667889999999999887541 2233 347888889999999999999999988752 21 233 566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744 485 YNCLTKGLCKIGEIDAAMMLVRDCL 509 (632)
Q Consensus 485 ~~~li~~~~~~g~~~~A~~~~~~~~ 509 (632)
++.|...|...|++++|+.++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888999999999999999988765
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.39 Score=40.23 Aligned_cols=100 Identities=12% Similarity=0.114 Sum_probs=70.1
Q ss_pred hhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 006744 388 VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC 467 (632)
Q Consensus 388 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 467 (632)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|.-.|+.++..
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34567788887777665 2567788888888888888888888887653 445555666677777776
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006744 468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507 (632)
Q Consensus 468 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 507 (632)
++-+.....|- ++.....+...|+++++.++|.+
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666555441 45555566677888888887765
No 220
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.27 E-value=1.7 Score=47.01 Aligned_cols=151 Identities=10% Similarity=0.054 Sum_probs=65.1
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhh--hcccHHHHHHHHHHHHhCCCCChhHHH---HHHHHHHhcCC
Q 006744 353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIYN---ILMGALLEIGE 427 (632)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~ 427 (632)
+...|+-+....++..+.+.. +..+...+..+++ ..|+.+.+..+.+.+.....+ ..-|. ++..+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp-~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDES-LLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCH-HHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHhcCCCC
Confidence 334455555555555554432 2233333333332 345555555555555543211 11122 23344555566
Q ss_pred hhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHH
Q 006744 428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI-DAAMMLVR 506 (632)
Q Consensus 428 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~ 506 (632)
.....+++..+.... ..+......+.-++...|+.+.+.+++..+.+.+ .|.+..-..+.-+....|.. .+|+.++.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 555555666655431 1222222222223344555555555555444432 23333333333333333332 45555665
Q ss_pred HHh
Q 006744 507 DCL 509 (632)
Q Consensus 507 ~~~ 509 (632)
.+.
T Consensus 654 ~L~ 656 (963)
T 4ady_A 654 PLT 656 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 554
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.20 E-value=0.016 Score=57.58 Aligned_cols=84 Identities=5% Similarity=-0.122 Sum_probs=41.6
Q ss_pred CChhHHHHHHHHHHHc---CCcc----cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HhhHHHHHHH
Q 006744 252 GRVVRGHELFREMKEN---GILI----DRAIYGVLIEGLVGEGKVGKACDLLKDLVDS-----GY-RAD-LGIYNSIIGG 317 (632)
Q Consensus 252 g~~~~a~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~-~~~~~~li~~ 317 (632)
|++++|+.++++..+. -+.+ ...+++.|...|...|++++|+.++++..+. |. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4556666666554431 1111 1235555556666666666666655555431 21 111 2345555555
Q ss_pred HHccCCHHHHHHHHHHHH
Q 006744 318 LCRVKQFDKAYKLFEVTV 335 (632)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~ 335 (632)
|...|++++|+.++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 555566555555555443
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.24 Score=41.48 Aligned_cols=104 Identities=12% Similarity=0.164 Sum_probs=68.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC
Q 006744 174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR 253 (632)
Q Consensus 174 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 253 (632)
=|+...+.|+++.|.++.+.+ -+...|..|.....+.|+++-|.+.|..... +..+.-.|.-.|+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 355566667777777776665 3677788888888888888888888877642 3344445555677
Q ss_pred hhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006744 254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD 298 (632)
Q Consensus 254 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (632)
.+.-.++-+.....| -++.....+.-.|+++++.++|.+
T Consensus 76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666655555444443 244555556667788877777754
No 223
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.93 E-value=0.086 Score=39.50 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=27.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744 456 CHVESGDILEACECHNKIIEMSQVPSVA-AYNCLTKGLCKIGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 456 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 511 (632)
.+...|++++|...|+++++... .+.. .+..+..+|...|++++|++.|+++++.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34445555555555555554321 1233 4555555555555555555555555544
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.79 E-value=0.00018 Score=69.64 Aligned_cols=204 Identities=9% Similarity=0.060 Sum_probs=129.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744 202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE 281 (632)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 281 (632)
...+|..|..+..+.+.+.+|++.|-+ .-|...|..+|.+..+.|.+++-.+.+...++. .+ +..+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~k-e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-AR-ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CC-STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hc-ccccHHHHHH
Confidence 345688888888888888888776632 235667888889888999999888888766654 22 4555678888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC--------------------CCC
Q 006744 282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD--------------------LAP 341 (632)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------------------~~p 341 (632)
+|++.+++.+.++++. .||..-...+.+-|...|.++.|.-+|..+.... -.-
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999888766544432 2455555556666666666666666554332110 112
Q ss_pred CHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 006744 342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421 (632)
Q Consensus 342 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 421 (632)
+..||..+-.+|...+++..|.-.--.++-. ..-...++..|-+.|.+++.+.+++.-.........+|+.|.-.
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaIL 272 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 272 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 5678888888998888877665444333322 11122234446666777777777766554333366666666666
Q ss_pred HHhc
Q 006744 422 LLEI 425 (632)
Q Consensus 422 ~~~~ 425 (632)
|++-
T Consensus 273 YsKY 276 (624)
T 3lvg_A 273 YSKF 276 (624)
T ss_dssp HHSS
T ss_pred HHhc
Confidence 6654
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.41 E-value=0.28 Score=36.37 Aligned_cols=46 Identities=11% Similarity=-0.067 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006744 464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510 (632)
Q Consensus 464 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 510 (632)
++|..++++.++.. +-+......+...+.+.|++++|+..|+++++
T Consensus 26 ~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444422 11233334444444444444444444444443
No 226
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.31 E-value=1 Score=44.79 Aligned_cols=167 Identities=12% Similarity=0.071 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC--HH
Q 006744 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVN-----SLSFSIAIQCHVESGDILEACECHNKIIE----MSQVPS--VA 483 (632)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~p~--~~ 483 (632)
...|...|...|++.+|..++.++...-...+ ...+...++.|...+++..|..++.++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 45667777888888888888887753211111 23456667778888888888888887642 222222 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHH----HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006744 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL----TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI 559 (632)
Q Consensus 484 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 559 (632)
.+...+..+...+++.+|.+.|.++.......-+...+.. ++....-.+....--.++........-++...|..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 5677777888888998888888877654222222222211 111112222111112222222222223566778888
Q ss_pred HHHHHhc--CCHHHHHHHHHHHHH
Q 006744 560 ISGMCKH--GTLEEARKVFTNLRE 581 (632)
Q Consensus 560 ~~~~~~~--g~~~~A~~~~~~m~~ 581 (632)
+.+|... .+++.+.+.|.....
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred HHHHHhchHhhhHHHHHHHHHHhc
Confidence 8888754 456776666654443
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.23 E-value=0.12 Score=42.17 Aligned_cols=67 Identities=18% Similarity=0.127 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 517 TEFKYALTILHVCRSG---EAEKIIEVLNEMTQEGCPP--NEVICSAIISGMCKHGTLEEARKVFTNLRERKL 584 (632)
Q Consensus 517 ~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 584 (632)
+..+.-.+.+++++++ +.++++.+|++..+.. .| +...+-.|.-+|.+.|++++|+++++.+.+..+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 3334333555666555 4446666666666543 23 234444555566677777777777777766654
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.21 E-value=0.86 Score=35.80 Aligned_cols=140 Identities=13% Similarity=0.062 Sum_probs=88.6
Q ss_pred HhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 006744 423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502 (632)
Q Consensus 423 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 502 (632)
.-.|..++..++..+.... .+..-|+-+|--....-+-+-..+.++.+-+ ..|.. .+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCcH----------hhhcHHHHH
Confidence 3456666777777766652 2444455555444444444444444444322 22211 233333333
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 503 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
..+-.+ ..+....+..+..+..+|+-+.-.+++.++... .+|++...-.+..+|.+.|+..+|.+++++.-++
T Consensus 82 ~C~~~~------n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 82 ECGVIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHh------cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 333221 123334555677788899999999999997554 4789999999999999999999999999999999
Q ss_pred CCC
Q 006744 583 KLL 585 (632)
Q Consensus 583 ~~~ 585 (632)
|+.
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 974
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.12 E-value=0.23 Score=37.72 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC------CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 241 YVTLIMGLCKGGRVVRGHELFREMKENG------ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301 (632)
Q Consensus 241 ~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (632)
+-.+...+...|++..|...|+...+.- -.....++..|..+|.+.|+++.|...+++..+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344444444444444444444443310 011334444444555555555555555554444
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.00 E-value=0.26 Score=37.48 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 554 VICSAIISGMCKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 581 (632)
.++..|..++.+.|+++.|..+++++.+
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444444444444444444444444444
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.87 E-value=0.3 Score=39.79 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCcc--cHHhHHHHHHHHHhcCCHHHHHHHH
Q 006744 222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGG---RVVRGHELFREMKENGILI--DRAIYGVLIEGLVGEGKVGKACDLL 296 (632)
Q Consensus 222 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~ 296 (632)
+.+-|.+..+.| .++..+.-.+..++++.+ ++++++.+|++..+.+ .| +...+-.|.-+|.+.|++++|.+.+
T Consensus 17 ~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 333344333333 234444444444444444 3445555555544433 11 1223333334445555555555555
Q ss_pred HHHHHC
Q 006744 297 KDLVDS 302 (632)
Q Consensus 297 ~~m~~~ 302 (632)
+.+.+.
T Consensus 95 ~~lL~i 100 (152)
T 1pc2_A 95 RGLLQT 100 (152)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555443
No 232
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.77 E-value=0.0048 Score=60.03 Aligned_cols=398 Identities=12% Similarity=0.046 Sum_probs=214.5
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006744 121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCK 200 (632)
Q Consensus 121 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 200 (632)
.|..+..+.+.++.-++++..+.+. ..+...=+.|+-+|++.+++.+.++++. .
T Consensus 88 eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ayAk~~rL~elEefl~-----------------------~ 141 (624)
T 3lvg_A 88 EVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-----------------------G 141 (624)
T ss_dssp HHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHHHHTSCSSSTTTSTTS-----------------------C
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHHHHhhCcHHHHHHHHc-----------------------C
Confidence 5666667778888888888765443 3344555789999999998876554422 1
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--------------------CCCcCHHhHHHHHHHHHhcCChhHHHHH
Q 006744 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKD--------------------LVEADVMAYVTLIMGLCKGGRVVRGHEL 260 (632)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~ 260 (632)
||..-...+..-|...|.++.|.-+|..+... .-.-+..||..+-.+|...+.+.-|.-.
T Consensus 142 ~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 142 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHH
T ss_pred CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHh
Confidence 44444455555555555555555544433210 0023667899999999999988887666
Q ss_pred HHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CC
Q 006744 261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD-DL 339 (632)
Q Consensus 261 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~ 339 (632)
--.++-. ..-...++..|-..|.+++.+.+++.-... -......|+.|.-.|++- +.++..+.++....+ ++
T Consensus 222 GLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNi 294 (624)
T 3lvg_A 222 GLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNI 294 (624)
T ss_dssp HHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCC
T ss_pred cchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccH
Confidence 5554432 122334667788889999988888877632 124677888888888876 344444333322111 11
Q ss_pred C------CCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChh
Q 006744 340 A------PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP 413 (632)
Q Consensus 340 ~------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 413 (632)
. -....|.-++-.|.+-.+++.|...+ .++ +++..-.........+..+.+--.+.+.--.+. .+.
T Consensus 295 pKviracE~ahLW~ElvfLY~~ydE~DnA~ltM---i~h--~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e---~P~ 366 (624)
T 3lvg_A 295 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KPL 366 (624)
T ss_dssp TTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTT---TSC--HHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTS---CCT
T ss_pred HHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHH---HhC--ChhhccHHHHHHHHHHcchHHHHHHHHHHHHHh---ChH
Confidence 1 01223444444444444444332211 100 000000000001112222222222222221222 222
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhC----------CCCcCHHHHHHHHHHHHHcCCHHHHHH------------HHH
Q 006744 414 IYNILMGALLEIGEVKKALYLFGKMRGL----------NLEVNSLSFSIAIQCHVESGDILEACE------------CHN 471 (632)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~~~p~~~t~~~ll~~~~~~g~~~~a~~------------~~~ 471 (632)
..+-|+.++...=|...+.++|++.-.. .-.-+...-.++-..|....|++.-.. +-+
T Consensus 367 lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~ 446 (624)
T 3lvg_A 367 LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQ 446 (624)
T ss_dssp TSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHH
T ss_pred HHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHH
Confidence 3455555555544555555555442110 001223333444455666666554322 222
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 006744 472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP 551 (632)
Q Consensus 472 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 551 (632)
++.+ ..-...-..-...|.++++|++++.+.++ ...-.| .|.....+|+.+-|.++++-.++.|
T Consensus 447 rLEk---HeL~eFRrIAA~LYkkn~rw~qsi~l~Kk----DklykD------AietAa~S~~~elaeeLL~yFv~~g--- 510 (624)
T 3lvg_A 447 RLEK---HELIEFRRIAAYLFKGNNRWKQSVELCKK----DSLYKD------AMQYASESKDTELAEELLQWFLQEE--- 510 (624)
T ss_dssp HHHT---CSSHHHHHHHHHHHHTTCHHHHHSSCSST----TCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHC---
T ss_pred HHhh---CchHHHHHHHHHHHHhcccHHHHHHHHHh----cccHHH------HHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence 2222 12233334445667889999999876643 122222 4566678899999999999998876
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHH
Q 006744 552 NEVICSAIISGMCKHGTLEEARKV 575 (632)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~ 575 (632)
+...|...+-.|...=+.+-++++
T Consensus 511 ~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 511 KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred chHHHHHHHHHHhhccChHHHHHH
Confidence 566677777777777777766655
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.57 E-value=0.25 Score=45.08 Aligned_cols=85 Identities=12% Similarity=0.035 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHh-----cCChhhHHHHHHHHhhCCCCc--CHHHHHHHHHHHHH-cCC
Q 006744 393 RIMMALDVFEELKGKGYS--SVPIYNILMGALLE-----IGEVKKALYLFGKMRGLNLEV--NSLSFSIAIQCHVE-SGD 462 (632)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~-~g~ 462 (632)
....|...+++..+.++. +-..|..+...|.+ -|+.++|.+.|++..+. .| +..++......++. .|+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCC
Confidence 345566666666666555 45567777777777 37777777777777764 34 25555556666655 377
Q ss_pred HHHHHHHHHHHHHCCCC
Q 006744 463 ILEACECHNKIIEMSQV 479 (632)
Q Consensus 463 ~~~a~~~~~~~~~~~~~ 479 (632)
.+++.+.+++.+.....
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 77777777777765544
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.33 E-value=0.34 Score=44.20 Aligned_cols=54 Identities=9% Similarity=0.044 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC
Q 006744 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH-GTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 532 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 585 (632)
|+.++|.++|++..+.+-.-+..++..+.+.++.. |+.++|.+++++.+.....
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 44555555555544442111244444444444442 5555555555555554444
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.84 E-value=0.74 Score=36.00 Aligned_cols=86 Identities=12% Similarity=0.018 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 006744 497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK---IIEVLNEMTQEGCPP--NEVICSAIISGMCKHGTLEE 571 (632)
Q Consensus 497 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~ 571 (632)
.+..+.+-|.+...... ++..+--.+.+++.++.+... ++.++++....+ .| .....-.|.-++.+.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~~--~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34444445554443322 333333336666666655444 777777777654 22 33344456667778888888
Q ss_pred HHHHHHHHHHCCCC
Q 006744 572 ARKVFTNLRERKLL 585 (632)
Q Consensus 572 A~~~~~~m~~~~~~ 585 (632)
|+++++.+++..+.
T Consensus 93 A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCC
Confidence 88888888877653
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.83 E-value=0.31 Score=39.21 Aligned_cols=54 Identities=7% Similarity=0.100 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744 532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586 (632)
Q Consensus 532 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 586 (632)
++.++|.++|+.+.+.+-.- ..+|.....--.++|+++.|++++...+..+..|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 78889999999887653233 7777777777778999999999999999988765
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.60 E-value=1.7 Score=35.02 Aligned_cols=104 Identities=12% Similarity=0.076 Sum_probs=63.8
Q ss_pred cCHHhHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCcCHH-hHHHHHH------HHHhcCChhHHHHHHHHHHHc
Q 006744 201 PDVFAYTAMIRVLAAERNL------DACLRVWEEMKKDLVEADVM-AYVTLIM------GLCKGGRVVRGHELFREMKEN 267 (632)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~-~~~~li~------~~~~~g~~~~a~~~~~~m~~~ 267 (632)
-|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|...|. .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3566677777777767777 6777777776653 344421 1111111 112236788888888887665
Q ss_pred CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306 (632)
Q Consensus 268 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 306 (632)
+-. =..+|....+.=.+.|++..|.+++......+.+|
T Consensus 90 hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 222 25566666666677788888888888777776653
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.83 E-value=8.2 Score=38.24 Aligned_cols=51 Identities=8% Similarity=0.057 Sum_probs=32.7
Q ss_pred cCChhHHHHHHHHHHhC-----CCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744 216 ERNLDACLRVWEEMKKD-----LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE 266 (632)
Q Consensus 216 ~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 266 (632)
.|++++|++.+-.+.+. +..-.......++..|...|+++...+.+..+.+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 36777777777665542 1233455566777778888888777776665544
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.50 E-value=0.81 Score=35.79 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=9.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 006744 524 TILHVCRSGEAEKIIEVLNEMTQ 546 (632)
Q Consensus 524 l~~~~~~~g~~~~a~~~~~~m~~ 546 (632)
|..++.+.|++++|.++++.+.+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.71 E-value=1 Score=35.42 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744 516 PTEFKYALTILHVCRSGE---AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 516 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 585 (632)
|+..+--.+.+++.++.+ ..+++.+++++.+.+..-....+-.|.-++.+.|++++|+++.+.+.+..+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 444443336777777654 4568888888877652123555667777888999999999999999887654
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.68 E-value=2.7 Score=33.52 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=48.6
Q ss_pred CChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744 515 GPTEFKYALTILHVCRSGE---AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL 585 (632)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 585 (632)
.|+..+--.+.+++.++.+ ..+++.+++++...+..-.....-.|.-++.+.|++++|+++.+.+.+..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3555444446777777754 4578888888877542223444556667888999999999999999888654
No 242
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.54 E-value=10 Score=36.56 Aligned_cols=160 Identities=8% Similarity=0.036 Sum_probs=82.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHhHHH--
Q 006744 417 ILMGALLEIGEVKKALYLFGKMRGLNLEVN-----SLSFSIAIQCHVESGDILEACECHNKIIEM--SQVPSVAAYNC-- 487 (632)
Q Consensus 417 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~-- 487 (632)
.++..|...|++.+|.+++.++.+.--..| ...|..-++.|...+++.++...+...... .+.+++.+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 467777788888888777777765311212 123555566777888888888887776532 22233332221
Q ss_pred --HHHHHH-hcCCHHHHHHHHHHHhhcCCCC--C---hHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhCCCCCCHHHHHH
Q 006744 488 --LTKGLC-KIGEIDAAMMLVRDCLGNVASG--P---TEFKYALTILHVCRSGEAEKIIEVLN-EMTQEGCPPNEVICSA 558 (632)
Q Consensus 488 --li~~~~-~~g~~~~A~~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~ 558 (632)
-...+. ..+++.+|...|-+........ | +...|. +.+..-.++..+...++. .....-..|+...+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYl--vL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYM--LLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH--HHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHH--HHHHHHcCCHHHHHHHhccccccccCCccHHHHHH
Confidence 123345 6788888887777665432221 1 122232 222222233222222221 1111112355555556
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 006744 559 IISGMCKHGTLEEARKVFTNL 579 (632)
Q Consensus 559 l~~~~~~~g~~~~A~~~~~~m 579 (632)
++.++ ..|++.+..++++..
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHS
T ss_pred HHHHH-HhCCHHHHHHHHHHH
Confidence 66554 556676666655544
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.33 E-value=2.8 Score=44.37 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=48.9
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHH
Q 006744 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG---------TLEEARKVFTNLR 580 (632)
Q Consensus 513 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~~~m~ 580 (632)
..+.+..-|..|.....+.+++++|++.|+..... .-+...+..|+..|.+.+ +.+..+.+.-++.
T Consensus 608 ~~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~ 682 (754)
T 4gns_B 608 DEKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKI 682 (754)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHH
Confidence 33456667888888888888888888888888875 467888888888888776 6666555554443
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.05 E-value=4.4 Score=45.92 Aligned_cols=84 Identities=13% Similarity=0.118 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006744 484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE---FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560 (632)
Q Consensus 484 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 560 (632)
-|..++..|.+.|.++.+.++-+.+++......+. ..|..+..++...|++++|...+-.+..... -...+..|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 35566666777777777777766666543323221 2356667777777777777777766655432 344555666
Q ss_pred HHHHhcCCH
Q 006744 561 SGMCKHGTL 569 (632)
Q Consensus 561 ~~~~~~g~~ 569 (632)
..+|..|..
T Consensus 979 ~~lce~~~~ 987 (1139)
T 4fhn_B 979 NQLTKQGKI 987 (1139)
T ss_dssp HHHHHHCCH
T ss_pred HHHHhCCCh
Confidence 655555443
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.84 E-value=17 Score=37.68 Aligned_cols=115 Identities=11% Similarity=0.093 Sum_probs=53.3
Q ss_pred ChhhHHHHHHHHhhCCCCcCHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 006744 427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQC----HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM 502 (632)
Q Consensus 427 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~----~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 502 (632)
+.+.|...|....... ..+......+-.. ....+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 5667777776665432 1222222222222 222232334445555443322 22222333333344557777777
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744 503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ 546 (632)
Q Consensus 503 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 546 (632)
..|+.+...... -+...| -+..++...|+.++|..+|+.+.+
T Consensus 306 ~~~~~l~~~~~~-~~r~~Y-W~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKE-KDEWRY-WQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGG-SHHHHH-HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccc-cHhHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Confidence 777665432111 111111 145555666777777777776654
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.70 E-value=4 Score=43.22 Aligned_cols=51 Identities=16% Similarity=0.068 Sum_probs=36.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579 (632)
Q Consensus 528 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 579 (632)
+...|+++.|+++.++.+.. .+-+..+|..|..+|.+.|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44567777777777777765 2455667778888888888888877777666
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.60 E-value=4.9 Score=39.05 Aligned_cols=71 Identities=17% Similarity=0.089 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCcccHHhHH
Q 006744 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE-----NGILIDRAIYG 277 (632)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~ 277 (632)
...++..+...|++++|+..+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445566666677777776666665543 34666677777777777777777777666543 46666655433
No 248
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.38 E-value=11 Score=34.91 Aligned_cols=127 Identities=9% Similarity=-0.057 Sum_probs=66.7
Q ss_pred HHHHhhCCCCcCHHHHHHHHHHHHHcCCHH-HHHHHHHHHH----HCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006744 435 FGKMRGLNLEVNSLSFSIAIQCHVESGDIL-EACECHNKII----EMS--QVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507 (632)
Q Consensus 435 ~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~-~a~~~~~~~~----~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 507 (632)
++-..+.+++++......++..+.....-+ .-.++.+.++ +.| ..-++.....+...|.+.|++.+|...|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 333444455666655555555544322111 1122333333 222 234778888999999999999999987742
Q ss_pred HhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE--GCPPNEVIC-SAIISGMCKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 508 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~ 581 (632)
+..-+...+..++.-+... . |.+-+...| ...+-.|.-.|+...|..+|+...+
T Consensus 160 -----~~~~s~~~~a~~l~~w~~~---------------~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 160 -----GTHDSMIKYVDLLWDWLCQ---------------VDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp -----SCHHHHHHHHHHHHHHHHH---------------TTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred -----CCCccHHHHHHHHHHHHHh---------------cCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1111333443333333222 1 221112222 2223345677899999999887754
No 249
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.74 E-value=30 Score=37.56 Aligned_cols=260 Identities=12% Similarity=0.043 Sum_probs=121.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--C-----CCHhcHHHHHHH
Q 006744 282 GLVGEGKVGKACDLLKDLVDSGYRAD--LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL--A-----PDFSTVNPLLVC 352 (632)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~-----p~~~~~~~ll~~ 352 (632)
+....|+.++++.+++.....+-..+ ...-..+.-+....|..+++..++.......- . +....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34556666666666655443210112 12222333444555555566666665543211 0 001111222222
Q ss_pred HHhcCC-hhHHHHHHHHHHHCCCCccc-cHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhh
Q 006744 353 CAEMGR-MDNFFKLLAQMEKLKFSVAA-DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKK 430 (632)
Q Consensus 353 ~~~~~~-~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 430 (632)
.+-.|. -+++.+.+..+....-.... .....+..++.-.|+-+....++..+.+....+..-.-.+.-++...|+.+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 222332 23445555554443221100 1112233334456676666777766655431122223333344446677777
Q ss_pred HHHHHHHHhhCCCCcCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006744 431 ALYLFGKMRGLNLEVNSLSFS---IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507 (632)
Q Consensus 431 A~~~~~~m~~~~~~p~~~t~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 507 (632)
+..+++.+.... .|.. -|. ++.-+|+..|+.....+++..+.+.. ..++.-...+.-++...|+.+.+.++++.
T Consensus 543 ~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 543 ADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 777777776531 2222 222 22335666777776666777776532 22333333333344455665555666654
Q ss_pred HhhcCCCCChHHHHHHHHHHHHHcCCH-HHHHHHHHHHHh
Q 006744 508 CLGNVASGPTEFKYALTILHVCRSGEA-EKIIEVLNEMTQ 546 (632)
Q Consensus 508 ~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 546 (632)
+.+. ..|....-..+..+....|+. .++++++..+..
T Consensus 620 L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 620 LSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp GGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 4432 134443333444444444443 567777777764
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.07 E-value=9.3 Score=43.28 Aligned_cols=157 Identities=10% Similarity=0.062 Sum_probs=92.9
Q ss_pred HhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhc----CCHHHHHHHHHHHHhCC--C
Q 006744 126 LKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ----GRIAEMLEILEKMRRNL--C 199 (632)
Q Consensus 126 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~----g~~~~a~~~~~~m~~~~--~ 199 (632)
+...+.++.+.++..|.. .+...--.+..++...|++++|.+.|.+.... +.......-+..+.... .
T Consensus 822 l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 822 LFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 444556777888877753 34444455678888999999999988764310 00000001112222111 1
Q ss_pred CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHh
Q 006744 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD----VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI 275 (632)
Q Consensus 200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 275 (632)
..-..-|..++..+.+.+.++.+.++-....+..-.-+ ...|..+.+++...|++++|...+-.+.....+ ...
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~c 973 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSC 973 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHH
Confidence 11234577788888888888888877766554321111 125677788888888888888888777655433 344
Q ss_pred HHHHHHHHHhcCCHH
Q 006744 276 YGVLIEGLVGEGKVG 290 (632)
Q Consensus 276 ~~~li~~~~~~g~~~ 290 (632)
...|+..+|..|..+
T Consensus 974 Lr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHhCCChh
Confidence 555666666655543
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.96 E-value=2 Score=41.80 Aligned_cols=72 Identities=10% Similarity=0.018 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhhHH
Q 006744 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD-----SGYRADLGIYN 312 (632)
Q Consensus 240 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~ 312 (632)
+...++..+...|+.+++...+..+.....- +...|..+|.+|.+.|+..+|++.|+.+.. .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4456778888999999999999999876543 888999999999999999999999998764 49998877644
No 252
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.68 E-value=4.5 Score=29.67 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=23.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006744 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233 (632)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 233 (632)
+|++++|..+.+.+ +.||...|-+|-. .+.|.-+++...+..+...|
T Consensus 53 rG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 53 RGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp TTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred chhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 34444444444333 2466666655543 35555556655555555554
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.68 E-value=21 Score=33.41 Aligned_cols=83 Identities=11% Similarity=0.027 Sum_probs=47.4
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006744 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558 (632)
Q Consensus 479 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 558 (632)
.-|+.....+...|.+.+++.+|...|- . +..+....|..++..+...+... ..|..+-..
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l---g~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRa 193 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L---GTKESPEVLARMEYEWYKQDESH--------------TAPLYCARA 193 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T---SCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h---cCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHH
Confidence 3567778888899999999999988872 2 33344345543443333322211 112222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006744 559 IISGMCKHGTLEEARKVFTNLRE 581 (632)
Q Consensus 559 l~~~~~~~g~~~~A~~~~~~m~~ 581 (632)
+--|.-.|++..|..+++...+
T Consensus 194 -VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 194 -VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHhCCHHHHHHHHHHHHH
Confidence 3345567788888777666554
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.52 E-value=29 Score=34.06 Aligned_cols=101 Identities=15% Similarity=0.017 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHh--HH
Q 006744 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLE--VNSLSFSIAIQCHVESGDILEACECHNKIIEM---SQVPSVAA--YN 486 (632)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~--~~ 486 (632)
++..+...|.+.|++++|.+.|.++...... --...+..+++.+...+++..+...+.++... +..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677888888888888888888888764222 22345677778888888888888888877542 22232211 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 006744 487 CLTKGLCKIGEIDAAMMLVRDCLGNVAS 514 (632)
Q Consensus 487 ~li~~~~~~g~~~~A~~~~~~~~~~~~~ 514 (632)
.-+..+...+++.+|.+.|-++......
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 1122344678899998888887765443
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.51 E-value=4.3 Score=29.73 Aligned_cols=32 Identities=13% Similarity=-0.105 Sum_probs=16.9
Q ss_pred CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006744 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233 (632)
Q Consensus 200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 233 (632)
.||...|-+|-. .+.|.-+++...+..+...|
T Consensus 67 ~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 67 WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 356555555443 35555555555555555544
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.37 E-value=11 Score=30.97 Aligned_cols=118 Identities=8% Similarity=-0.033 Sum_probs=63.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC-------HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHH-H
Q 006744 450 FSIAIQCHVESGDILEACECHNKIIEMS-QVPS-------VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF-K 520 (632)
Q Consensus 450 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~ 520 (632)
+..-++.+...|.++.|.-+.+.+.... ..++ ..++..+.+++...|++.+|...|+++++....-+... .
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4445566777888888877777655321 1233 12455667777888888888888887654322111110 0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744 521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580 (632)
Q Consensus 521 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 580 (632)
+..+. ... .... ......+...--.+..+|.+.|++++|+.+++.+.
T Consensus 103 ~~~~~---~~s-s~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPSTG---NSA-STPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccccc---ccC-CCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 00000 000 0000 00122334444557788889999999998876553
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.44 E-value=6.3 Score=32.36 Aligned_cols=62 Identities=6% Similarity=-0.087 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCcCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744 414 IYNILMGALLEIGEVKKALYLFGKMRGLN-LEVNS-------LSFSIAIQCHVESGDILEACECHNKIIE 475 (632)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 475 (632)
.+-.-+..+...|.++.|+-+.+.+.... ..++. .++..+.+++...+++..|...|++.++
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45556788889999999998888765431 23332 3567778899999999999999999865
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.11 E-value=3.2 Score=37.22 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=33.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744 491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE 547 (632)
Q Consensus 491 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 547 (632)
.+.+.|++++|++....-++..+...+.. ..++.-+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R--~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLR--SSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34566777777777766665543333322 33667777777777777766666654
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.43 E-value=13 Score=27.51 Aligned_cols=47 Identities=2% Similarity=-0.067 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006744 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267 (632)
Q Consensus 221 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 267 (632)
+..+-++.+-...+.|+.....+.+++|-+.+++..|.++|+-++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555555555556666666666666666666666666666665543
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.64 E-value=34 Score=31.93 Aligned_cols=47 Identities=9% Similarity=-0.072 Sum_probs=27.7
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcC
Q 006744 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG 357 (632)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 357 (632)
|......+...|.+.+++.+|...|- .|-.+....|..++.-+...+
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhc
Confidence 45556667778888888888877763 233323356655554444433
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.65 E-value=18 Score=26.79 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006744 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV 512 (632)
Q Consensus 465 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 512 (632)
+..+-++.+......|++.+..+.+++|-+.+++.-|.++|+.+....
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 344444444444555555555555555555555555555555544443
No 262
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=78.02 E-value=13 Score=34.54 Aligned_cols=64 Identities=13% Similarity=0.216 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCC
Q 006744 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD--ILEACECHNKIIEMSQV 479 (632)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~ 479 (632)
.+.++.-|...|+.++|...++++...... .......+..++-+.++ .+....++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 567788888889999999988888632111 12233334444443322 34566677777665544
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=77.66 E-value=20 Score=28.11 Aligned_cols=17 Identities=12% Similarity=0.389 Sum_probs=6.4
Q ss_pred HHhcCChhHHHHHHHHH
Q 006744 353 CAEMGRMDNFFKLLAQM 369 (632)
Q Consensus 353 ~~~~~~~~~a~~~~~~~ 369 (632)
+.+.|+++.|.++.+.+
T Consensus 88 ~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 88 CYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 33333333333333333
No 264
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=77.64 E-value=15 Score=34.88 Aligned_cols=65 Identities=11% Similarity=0.209 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCC
Q 006744 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD--ILEACECHNKIIEMSQVP 480 (632)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~p 480 (632)
.+.++.-|...|+.++|...++++...... .......+..++-+.++ .+...+++..+.+.|+-.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 577788888889999999999888642211 12334444444444333 345667777777666543
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.12 E-value=25 Score=34.54 Aligned_cols=99 Identities=6% Similarity=-0.080 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CChHHHH--H
Q 006744 449 SFSIAIQCHVESGDILEACECHNKIIEMSQV--PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS--GPTEFKY--A 522 (632)
Q Consensus 449 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~p~~~~~--~ 522 (632)
+...+...|.+.|+++.|.++|.++.+.... --...+-.++..+...+++..+...+.++...... .++...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667888899999999999999999875332 33667778889999999999999999887543222 2333211 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744 523 LTILHVCRSGEAEKIIEVLNEMTQE 547 (632)
Q Consensus 523 ~l~~~~~~~g~~~~a~~~~~~m~~~ 547 (632)
..+..+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122234568999998888776543
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.79 E-value=23 Score=27.81 Aligned_cols=59 Identities=7% Similarity=0.005 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744 221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280 (632)
Q Consensus 221 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 280 (632)
+..+-++.+...++.|+.......+++|-+.+++..|.++|+-++.+ ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 44555555555666667777777777777777777777777666543 222333455444
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.79 E-value=53 Score=30.37 Aligned_cols=26 Identities=23% Similarity=0.086 Sum_probs=18.7
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHH
Q 006744 307 DLGIYNSIIGGLCRVKQFDKAYKLFE 332 (632)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~ 332 (632)
+......+...|.+.|++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 55566677777888888888777664
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.18 E-value=65 Score=31.03 Aligned_cols=165 Identities=11% Similarity=-0.034 Sum_probs=87.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHhhHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCHhcH-
Q 006744 273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDS-GYRA---DLGIYNSIIGGLCRV-KQFDKAYKLFEVTVQDDLAPDFSTV- 346 (632)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~---~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~- 346 (632)
......|...|.+.|+.++..+++.....- +.-+ .......|++.+... +..+.-.++..+..+..-. +..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 456677888888999988888888776532 0011 123455667766654 3344444444444332110 11233
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHHCCCCcc-----ccHHHHHHHHhhhcccHHHHHHHHHHHHhCC--C-CChh
Q 006744 347 -----NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA-----ADLEKFFEFLVGKEERIMMALDVFEELKGKG--Y-SSVP 413 (632)
Q Consensus 347 -----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~ 413 (632)
..++..|...|++.+|..++..+.+.--..+ ..++..-+.+|...+++.++...+....... . .++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 1466777778888888777777655311111 1223334445566677777776666553211 1 1111
Q ss_pred H----HHHHHHHHH-hcCChhhHHHHHHHH
Q 006744 414 I----YNILMGALL-EIGEVKKALYLFGKM 438 (632)
Q Consensus 414 ~----~~~li~~~~-~~g~~~~A~~~~~~m 438 (632)
+ ...-...+. ..+++..|...|-+.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 1 112223344 566777766666554
No 269
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=73.60 E-value=62 Score=30.60 Aligned_cols=65 Identities=17% Similarity=0.089 Sum_probs=42.5
Q ss_pred HHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC--hhhHHHHHHHHhhCCCCcC
Q 006744 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE--VKKALYLFGKMRGLNLEVN 446 (632)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~ 446 (632)
..++.=|...|+.++|.+.++++.........+...+..++-+.++ .+....++..+...|+-..
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 4455557788999999999988865432244555566666655433 3457778888887765443
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.96 E-value=32 Score=27.04 Aligned_cols=49 Identities=10% Similarity=0.187 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006744 465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA 513 (632)
Q Consensus 465 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 513 (632)
+..+-++.+....+.|++.+....+++|-+.+++.-|.++|+-+..+.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~ 119 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG 119 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 3444444444455556666666666666666666666666655554433
No 271
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=72.29 E-value=8 Score=34.03 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=6.8
Q ss_pred HHHHHHhcCChhHH
Q 006744 209 MIRVLAAERNLDAC 222 (632)
Q Consensus 209 li~~~~~~g~~~~A 222 (632)
.+...++.|+.+-+
T Consensus 45 ~L~~A~~~~~~~~v 58 (240)
T 3eu9_A 45 LLHWAAINNRIDLV 58 (240)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCHHHH
Confidence 34444555665433
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.16 E-value=30 Score=25.45 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=5.7
Q ss_pred HhcCCHHHHHHHH
Q 006744 493 CKIGEIDAAMMLV 505 (632)
Q Consensus 493 ~~~g~~~~A~~~~ 505 (632)
...|++++|..+.
T Consensus 50 mNrG~Yq~Al~l~ 62 (115)
T 2uwj_G 50 ANQGRYQEALAFA 62 (115)
T ss_dssp HHTTCHHHHHGGG
T ss_pred HcchhHHHHHHhc
Confidence 3444444444433
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.46 E-value=31 Score=25.39 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=5.6
Q ss_pred HhcCCHHHHHHHH
Q 006744 493 CKIGEIDAAMMLV 505 (632)
Q Consensus 493 ~~~g~~~~A~~~~ 505 (632)
...|++++|..+.
T Consensus 51 mNrG~Yq~Al~l~ 63 (116)
T 2p58_C 51 MNRGDYASALQQG 63 (116)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HcchhHHHHHHhc
Confidence 3444444444443
No 274
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=67.36 E-value=32 Score=30.02 Aligned_cols=85 Identities=13% Similarity=-0.035 Sum_probs=40.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcCHHh--HHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHh--HHHHHHHHHh
Q 006744 210 IRVLAAERNLDACLRVWEEMKKDLVEADVMA--YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI--YGVLIEGLVG 285 (632)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~ 285 (632)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 4445566777777777766655554333211 112334444555543 3334444554433211 1123334445
Q ss_pred cCCHHHHHHHHHH
Q 006744 286 EGKVGKACDLLKD 298 (632)
Q Consensus 286 ~g~~~~a~~~~~~ 298 (632)
.|+.+-+..+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 6666555444443
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.63 E-value=65 Score=27.43 Aligned_cols=53 Identities=19% Similarity=0.113 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHcCCccc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744 254 VVRGHELFREMKENGILID-RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA 306 (632)
Q Consensus 254 ~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 306 (632)
..++.++|..|...|+-.. ...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4466666666665554322 3345555555555666666666666555554443
No 276
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=62.44 E-value=57 Score=25.95 Aligned_cols=67 Identities=18% Similarity=0.083 Sum_probs=28.9
Q ss_pred cCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744 445 VNSLSFSIAIQCHVESGDI---LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 445 p~~~t~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 511 (632)
|+..+--.+..++.++.+. .++..+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3333333333344444332 244455555544322112222233444455555555555555555543
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=61.84 E-value=71 Score=28.47 Aligned_cols=49 Identities=8% Similarity=-0.043 Sum_probs=25.1
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHH
Q 006744 458 VESGDILEACECHNKIIEMSQVPSVAA--YNCLTKGLCKIGEIDAAMMLVR 506 (632)
Q Consensus 458 ~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~ 506 (632)
+..+......++.+.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 344554445566666666665544221 1223444455666665555544
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=61.21 E-value=39 Score=28.78 Aligned_cols=52 Identities=15% Similarity=0.027 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 006744 394 IMMALDVFEELKGKGYS--SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445 (632)
Q Consensus 394 ~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 445 (632)
..++.++|..|..+++. ....|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44555555555544443 44556666666666667777777666666666555
No 279
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=60.50 E-value=39 Score=30.69 Aligned_cols=10 Identities=0% Similarity=0.192 Sum_probs=4.0
Q ss_pred HHhhCCCCcC
Q 006744 437 KMRGLNLEVN 446 (632)
Q Consensus 437 ~m~~~~~~p~ 446 (632)
.+.+.|..++
T Consensus 213 ~Ll~~gad~~ 222 (285)
T 3kea_A 213 ALFKYDINIY 222 (285)
T ss_dssp HHTTSCBCST
T ss_pred HHHHcCCCCC
Confidence 3334444443
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=59.18 E-value=29 Score=31.22 Aligned_cols=48 Identities=10% Similarity=-0.085 Sum_probs=24.8
Q ss_pred HhcCChhhHHHHHHHHhhCCCCcCHHH--HHHHHHHHHHcCCHHHHHHHH
Q 006744 423 LEIGEVKKALYLFGKMRGLNLEVNSLS--FSIAIQCHVESGDILEACECH 470 (632)
Q Consensus 423 ~~~g~~~~A~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~g~~~~a~~~~ 470 (632)
+..|......++++.+.+.|..++... -.+.+...+..|+.+-+..++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 345555555666677777766554321 122334445566665444333
No 281
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.17 E-value=62 Score=25.26 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC--HHHHHHHHHHHHhCCCC
Q 006744 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ--FDKAYKLFEVTVQDDLA 340 (632)
Q Consensus 277 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 340 (632)
..++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 44555566666666666666665421111 22233333344444322 34455556555555443
No 282
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=56.19 E-value=15 Score=32.90 Aligned_cols=55 Identities=11% Similarity=-0.063 Sum_probs=30.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcCHH-------hHHHHHHHHH--hcCChhHHHHHHHHH
Q 006744 210 IRVLAAERNLDACLRVWEEMKKDLVEADVM-------AYVTLIMGLC--KGGRVVRGHELFREM 264 (632)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~li~~~~--~~g~~~~a~~~~~~m 264 (632)
+...++.|+.+....+++.+.+.|...+.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344556778777777777666665444422 2233333332 456666666666554
No 283
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=55.88 E-value=71 Score=31.09 Aligned_cols=80 Identities=14% Similarity=0.047 Sum_probs=36.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcC---HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHH--hHHHHHHHH
Q 006744 209 MIRVLAAERNLDACLRVWEEMKKDLVEAD---VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA--IYGVLIEGL 283 (632)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~ 283 (632)
.+...+..|+.+-+..+++. |..++ .... +.+...+..|+.+-+ +.+.+.|..++.. .-.+.+...
T Consensus 50 ~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~-t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~g~t~L~~A 120 (437)
T 1n11_A 50 PLHMAARAGHTEVAKYLLQN----KAKVNAKAKDDQ-TPLHCAARIGHTNMV----KLLLENNANPNLATTAGHTPLHIA 120 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHH----TCCSSCCCTTSC-CHHHHHHHHTCHHHH----HHHHHHTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCC-CHHHHHHHCCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHH
Confidence 44455667776655554443 32222 1112 234444556665433 3334445443321 111233445
Q ss_pred HhcCCHHHHHHHHH
Q 006744 284 VGEGKVGKACDLLK 297 (632)
Q Consensus 284 ~~~g~~~~a~~~~~ 297 (632)
++.|+.+.+..+++
T Consensus 121 ~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 121 AREGHVETVLALLE 134 (437)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 56677665555544
No 284
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=54.76 E-value=2e+02 Score=29.71 Aligned_cols=50 Identities=0% Similarity=-0.124 Sum_probs=30.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006744 525 ILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577 (632)
Q Consensus 525 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 577 (632)
+..+...|....|...|..+.+. . +......+.......|..+.+.....
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 44566778888888888777654 2 33333344445556677776655443
No 285
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.08 E-value=77 Score=25.57 Aligned_cols=49 Identities=27% Similarity=0.290 Sum_probs=23.1
Q ss_pred HHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 006744 397 ALDVFEELKGKGYS--SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445 (632)
Q Consensus 397 a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 445 (632)
+.++|..|..+++. ....|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34444444444333 33344444555555555555555555555444444
No 286
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=53.13 E-value=62 Score=27.68 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=13.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 006744 560 ISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
+..|.+.|.+++|.+++++....
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHhcchHHHHHHHHHHhcC
Confidence 34555666666666666665543
No 287
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=51.47 E-value=1.4e+02 Score=26.87 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=35.7
Q ss_pred hhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 006744 388 VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG 440 (632)
Q Consensus 388 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 440 (632)
..+.|+++++++....-.+..+.|...-..++..+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34556666666666666666666666677777777777777777766666655
No 288
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=51.28 E-value=36 Score=28.63 Aligned_cols=7 Identities=14% Similarity=0.164 Sum_probs=2.6
Q ss_pred cCCHHHH
Q 006744 286 EGKVGKA 292 (632)
Q Consensus 286 ~g~~~~a 292 (632)
.|+.+.+
T Consensus 15 ~g~~~~v 21 (201)
T 3hra_A 15 QRDTKKV 21 (201)
T ss_dssp TTCHHHH
T ss_pred hccHHHH
Confidence 3333333
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.04 E-value=85 Score=27.12 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=9.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 006744 283 LVGEGKVGKACDLLKDLVDSG 303 (632)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~g 303 (632)
.++.|+.+.+..+++.+.+.|
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 334444444444444444333
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=49.16 E-value=55 Score=26.48 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 006744 277 GVLIEGLVGEGKVGKACDLLKDLV 300 (632)
Q Consensus 277 ~~li~~~~~~g~~~~a~~~~~~m~ 300 (632)
..++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344555555566666666555554
No 291
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=46.53 E-value=1.1e+02 Score=25.05 Aligned_cols=50 Identities=10% Similarity=0.060 Sum_probs=21.9
Q ss_pred HHHHHHHHhhCCCCcCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006744 431 ALYLFGKMRGLNLEVNS-LSFSIAIQCHVESGDILEACECHNKIIEMSQVP 480 (632)
Q Consensus 431 A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p 480 (632)
+..+|..|...|+--.. .-|......+...|++.+|.++|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 44444444444433222 223333334444455555555555544444444
No 292
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=46.44 E-value=1e+02 Score=25.68 Aligned_cols=64 Identities=9% Similarity=0.125 Sum_probs=30.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCcccHHh---HHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCC
Q 006744 244 LIMGLCKGGRVVRGHELFREMKENGILIDRAI---YGVLIEGLVG-EGKVGKACDLLKDLVDSGYRAD 307 (632)
Q Consensus 244 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~ 307 (632)
.+...+..|+.+.-.++.+.+.+.|..++... .+.|..++.. ..+.....++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 34444555555555566666666666554321 1222222111 2233444556666666665544
No 293
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=46.43 E-value=20 Score=32.05 Aligned_cols=26 Identities=8% Similarity=-0.010 Sum_probs=14.2
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCccc
Q 006744 247 GLCKGGRVVRGHELFREMKENGILID 272 (632)
Q Consensus 247 ~~~~~g~~~~a~~~~~~m~~~~~~p~ 272 (632)
..++.|+.+....+++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 34455666666666665555554444
No 294
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.87 E-value=1.8e+02 Score=26.73 Aligned_cols=62 Identities=18% Similarity=0.110 Sum_probs=36.8
Q ss_pred HHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC--hhhHHHHHHHHhhCCCC
Q 006744 383 FFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE--VKKALYLFGKMRGLNLE 444 (632)
Q Consensus 383 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 444 (632)
.++.-|...|+.++|.+.++++.........++..+..++-+.++ .+....++..+...|+-
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 344456677888888888888764322234445555555554433 34566777777766543
No 295
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=45.87 E-value=43 Score=31.68 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=11.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC
Q 006744 281 EGLVGEGKVGKACDLLKDLVDSGY 304 (632)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~m~~~g~ 304 (632)
...+..|+.+-+..+++.....|.
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHhccccCC
Confidence 334445555555555544443343
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.12 E-value=1.6e+02 Score=25.83 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=25.6
Q ss_pred ChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 006744 218 NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265 (632)
Q Consensus 218 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 265 (632)
.-.-+..+.+++.. ..+.......+..+.+.|+-++|.++|-+..
T Consensus 74 ~~~L~~~L~~~l~~---~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 74 REAISSKLSQSILS---SNEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 33344444444432 3445555566677777777777777775543
No 297
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=44.39 E-value=1.3e+02 Score=24.47 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006744 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT 334 (632)
Q Consensus 255 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 334 (632)
+.+..+++.+.+.|+.-|...-...+....+.| .....+-.++...|+ +..+....+..+-. ...+.|..+.++-
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI--~~~~i~~al~~~~~-d~~~~a~~l~~kk 121 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGI--SREATEKAMREADI-DWAALARDQATRK 121 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTC--CHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCC--CHHHHHHHHHHcCH-hHHHHHHHHHHHH
Q ss_pred HhCCCCCCHhcHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 006744 335 VQDDLAPDFSTVNPLLVCCAEMG-RMDNFFKLLAQMEK 371 (632)
Q Consensus 335 ~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~ 371 (632)
.......+.....-++..+.+.| .++.+..+++.+..
T Consensus 122 ~~~~~~~~~~~~~K~~~~L~rrGF~~~~i~~~l~~~~~ 159 (159)
T 3c1d_A 122 YGEPLPTVFSEKVKIQRFLLYRGYLMEDIQDIWRNFAD 159 (159)
T ss_dssp HCSSCCCSHHHHHHHHHHHHHTTCCHHHHTTCC-----
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHhccC
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=44.35 E-value=87 Score=26.93 Aligned_cols=9 Identities=0% Similarity=-0.075 Sum_probs=3.7
Q ss_pred HHHHhcCCH
Q 006744 281 EGLVGEGKV 289 (632)
Q Consensus 281 ~~~~~~g~~ 289 (632)
...+..|+.
T Consensus 47 ~~A~~~~~~ 55 (240)
T 3eu9_A 47 HWAAINNRI 55 (240)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhCCH
Confidence 333444443
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=41.88 E-value=84 Score=25.35 Aligned_cols=12 Identities=17% Similarity=0.122 Sum_probs=5.3
Q ss_pred HHHHHHHHhhCC
Q 006744 431 ALYLFGKMRGLN 442 (632)
Q Consensus 431 A~~~~~~m~~~~ 442 (632)
+..++..+...|
T Consensus 64 ~~~LL~~L~~~~ 75 (152)
T 2ion_A 64 ILDLLKSLWKSS 75 (152)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 444444444443
No 300
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=41.65 E-value=64 Score=29.25 Aligned_cols=112 Identities=8% Similarity=-0.115 Sum_probs=46.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcCH---HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHh---HHHHHHH
Q 006744 209 MIRVLAAERNLDACLRVWEEMKKDLVEADV---MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI---YGVLIEG 282 (632)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~ 282 (632)
.+...+..|+.+-+.. +.+.|..++. .-++ .+...+..|+.+-+.-+ .+.|..++... +.+.+..
T Consensus 65 ~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~L----l~~ga~~~~~~~~g~~t~L~~ 135 (285)
T 3kea_A 65 PLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLF----VKKNWRLMFYGKTGWKTSFYH 135 (285)
T ss_dssp HHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHH----HHHCGGGGGCSSSGGGSHHHH
T ss_pred HHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHH----HhcCCCCCccCCCCCCCHHHH
Confidence 3444455666544433 3344433332 1222 23334455655433333 33344433221 1234444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHH
Q 006744 283 LVGEGKVGKACDLLKDLVDSGYRADLG-IYNSIIGGLCRVKQFDKAYKLFEV 333 (632)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 333 (632)
.+..|+.+-+ +.+.+.|...... .-.+.+...+..|+.+-+.-+++.
T Consensus 136 A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 136 AVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 5555655433 3333333322111 222334444556666655555544
No 301
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=41.61 E-value=50 Score=31.11 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHh
Q 006744 415 YNILMGALLEIGEVKKALYLFGKMR 439 (632)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~m~ 439 (632)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4455666666666666666666654
No 302
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=41.11 E-value=62 Score=30.57 Aligned_cols=15 Identities=27% Similarity=0.193 Sum_probs=7.7
Q ss_pred HHcCCHHHHHHHHHH
Q 006744 458 VESGDILEACECHNK 472 (632)
Q Consensus 458 ~~~g~~~~a~~~~~~ 472 (632)
+..|+.+-+..+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 445665555555443
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.70 E-value=1.3e+02 Score=26.43 Aligned_cols=21 Identities=19% Similarity=0.033 Sum_probs=11.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 006744 454 IQCHVESGDILEACECHNKII 474 (632)
Q Consensus 454 l~~~~~~g~~~~a~~~~~~~~ 474 (632)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455555566666655555544
No 304
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.50 E-value=78 Score=26.42 Aligned_cols=16 Identities=6% Similarity=0.171 Sum_probs=10.2
Q ss_pred HHHccCCHHHHHHHHH
Q 006744 317 GLCRVKQFDKAYKLFE 332 (632)
Q Consensus 317 ~~~~~g~~~~A~~~~~ 332 (632)
..+..|+.+.+..++.
T Consensus 11 ~A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 11 EAANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHHTTCHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHH
Confidence 3456677777666664
No 305
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=39.47 E-value=1.5e+02 Score=28.75 Aligned_cols=334 Identities=11% Similarity=0.039 Sum_probs=146.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHh--HHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHH--hHHHHHHHHH
Q 006744 209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMA--YVTLIMGLCKGGRVVRGHELFREMKENGILIDRA--IYGVLIEGLV 284 (632)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~ 284 (632)
.+...+..|+.+-+..++ +.|..++... ..+.+...+..|+.+-+.-++ +.|..++.. .-.+.+...+
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHH
Confidence 445556778876555444 4454444321 223455556677766555444 444433321 1123445556
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC---CHhcHHHHHHHHHhcCC
Q 006744 285 GEGKVGKACDLLKDLVDSGYRADL---GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP---DFSTVNPLLVCCAEMGR 358 (632)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~ 358 (632)
..|+.+-+..++ +.|..++. .-++ .+...+..|+.+.+..+++. +... +...++ .+...+..|+
T Consensus 89 ~~g~~~~v~~Ll----~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~g~t-~L~~A~~~g~ 158 (437)
T 1n11_A 89 RIGHTNMVKLLL----ENNANPNLATTAGHT-PLHIAAREGHVETVLALLEK----EASQACMTKKGFT-PLHVAAKYGK 158 (437)
T ss_dssp HHTCHHHHHHHH----HHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHT----TCCSCCCCTTSCC-HHHHHHHTTC
T ss_pred HCCCHHHHHHHH----hCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHhC----CCCCcCCCCCCCC-HHHHHHHcCC
Confidence 777776544444 44443332 1222 34445667777766665543 3222 222222 3444556777
Q ss_pred hhHHHHHHHHHHHCCCCccccH--HHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHH
Q 006744 359 MDNFFKLLAQMEKLKFSVAADL--EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFG 436 (632)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 436 (632)
.+-+.. +.+.|..++..- ....+...+..|+.+-+..+++.-......+..-++ .+...+..|+.+-+..++
T Consensus 159 ~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll- 232 (437)
T 1n11_A 159 VRVAEL----LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVARSLL- 232 (437)
T ss_dssp HHHHHH----HHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCC-HHHHHHHTTCHHHHHHHH-
T ss_pred HHHHHH----HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHH-
Confidence 664444 444454332210 111222334556665444443321111111111122 334445667765544444
Q ss_pred HHhhCCCCcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744 437 KMRGLNLEVNSLS--FSIAIQCHVESGDILEACECHNKIIEMSQVPSV---AAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 437 ~m~~~~~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 511 (632)
+.|..++... -.+.+...+..|..+-.. .+.+.+..++. .-. +.+...+..|..+-+..+++.-..-
T Consensus 233 ---~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~ 304 (437)
T 1n11_A 233 ---QYGGSANAESVQGVTPLHLAAQEGHAEMVA----LLLSKQANGNLGNKSGL-TPLHLVAQEGHVPVADVLIKHGVMV 304 (437)
T ss_dssp ---HTTCCTTCCCTTCCCHHHHHHHTTCHHHHH----HHHTTTCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHHHHTCCT
T ss_pred ---HcCCCCCCCCCCCCCHHHHHHHCCCHHHHH----HHHhcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCccC
Confidence 3333222211 112233344566655443 34444443321 111 2333445667777665555431100
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744 512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV---ICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586 (632)
Q Consensus 512 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 586 (632)
...+....+ .+...+..|+.+-+.-+ .+.|..++.. -++.| ...+..|+.+ +++.+.+.|..+
T Consensus 305 --~~~~~~g~t-~L~~A~~~g~~~~v~~L----l~~gad~n~~~~~g~t~L-~~A~~~g~~~----iv~~Ll~~ga~~ 370 (437)
T 1n11_A 305 --DATTRMGYT-PLHVASHYGNIKLVKFL----LQHQADVNAKTKLGYSPL-HQAAQQGHTD----IVTLLLKNGASP 370 (437)
T ss_dssp --TCCCSSCCC-HHHHHHHSSCSHHHHHH----HHTTCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCS
T ss_pred --CCCCCCCCC-HHHHHHHcCcHHHHHHH----HhcCCCCCCCCCCCCCHH-HHHHHCChHH----HHHHHHHCcCCC
Confidence 011111122 23344566776544443 3445444322 12222 3334566654 445556666654
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=38.91 E-value=2.8e+02 Score=27.18 Aligned_cols=117 Identities=12% Similarity=0.045 Sum_probs=58.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006744 120 DLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLC 199 (632)
Q Consensus 120 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 199 (632)
.++..+....++++.|+++-. +.|++--...|..-.+.+...|++++|.++-...++ |+
T Consensus 333 ~ivpyi~~~l~n~~lA~~lA~----R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-----------------gi 391 (494)
T 1bpo_A 333 NIIPYITNVLQNPDLALRMAV----RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-----------------GI 391 (494)
T ss_dssp THHHHHHHTTCCHHHHHHHHH----HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-----------------GS
T ss_pred cchhhhhhccCCHHHHHHHHH----hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-----------------cc
Confidence 466667777778888876643 355655555555555555566666555554333221 23
Q ss_pred CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHH
Q 006744 200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH 258 (632)
Q Consensus 200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 258 (632)
-.+..|.+.+-..=...|+..-.+..|..+.+.| ..+..----+++.-...|+.+-..
T Consensus 392 LRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~lle 449 (494)
T 1bpo_A 392 LRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLE 449 (494)
T ss_dssp SCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHH
Confidence 3444444443333333444444555555555544 333322223344444444443333
No 307
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.94 E-value=1.4e+02 Score=23.16 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 006744 486 NCLTKGLCKIGEIDAAMMLVRDC 508 (632)
Q Consensus 486 ~~li~~~~~~g~~~~A~~~~~~~ 508 (632)
..++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34445555555555555555553
No 308
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=35.18 E-value=2e+02 Score=24.13 Aligned_cols=122 Identities=14% Similarity=0.026 Sum_probs=56.2
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI 280 (632)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 280 (632)
+|...-...+.++.+.++.+ +...+..+.. .+|...-...+.++.+.++.+ +...+..+.+ .++..+-...+
T Consensus 62 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 133 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAA 133 (211)
T ss_dssp SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHH
Confidence 34444445555555555432 3333333332 345555555566666666533 3333333332 23555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006744 281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV 335 (632)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 335 (632)
.++.+.|+.+ +...+..+.+. ++..+-...+.++.+.+. .++...+..+.
T Consensus 134 ~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 134 FALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHcCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 6666555533 33333333322 344444445555555554 33344444443
No 309
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.86 E-value=1.2e+02 Score=24.39 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=35.0
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCCh
Q 006744 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359 (632)
Q Consensus 298 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 359 (632)
.+.+.|++.+ ..-..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 17 ~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3455565533 333445555555566667777777777666555666666666666666543
No 310
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=34.75 E-value=2.5e+02 Score=25.74 Aligned_cols=104 Identities=5% Similarity=-0.096 Sum_probs=50.4
Q ss_pred HHHHHHHHHCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---ChHHHHHHHHHHHHHcCCHHHHHHHH
Q 006744 467 CECHNKIIEMSQVPSVAA--YNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRSGEAEKIIEVL 541 (632)
Q Consensus 467 ~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~ 541 (632)
..+.+.+++.|..++... -.+.+...+..|..+....+++. .+.. .|..-++.| ...+..|+.+- .
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~----~~~~vn~~d~~G~TpL-~~A~~~g~~~i----v 289 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ----EHIEINDTDSDGKTAL-LLAVELKLKKI----A 289 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS----TTCCTTCBCTTSCBHH-HHHHHTTCHHH----H
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh----cCCcccCcCCCCCCHH-HHHHHcCCHHH----H
Confidence 344455566665554221 11234445667777766555432 1111 122122223 33345666543 3
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744 542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586 (632)
Q Consensus 542 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 586 (632)
+.+.+.|..+|..+ .+...++.|+.+ +.+.+++.|-.+
T Consensus 290 ~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~ 327 (337)
T 4g8k_A 290 ELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKE 327 (337)
T ss_dssp HHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC
T ss_pred HHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCC
Confidence 44456676666543 233334566654 455667777654
No 311
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=34.16 E-value=1.8e+02 Score=33.05 Aligned_cols=188 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred cccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh----------------------------
Q 006744 377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEV---------------------------- 428 (632)
Q Consensus 377 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---------------------------- 428 (632)
...+..+.+.-..+. +.+++.++|+++.+..+.....+-.++..+.....-
T Consensus 1107 ~e~~rd~~~~~~~k~-~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1185 (1354)
T 3lxu_X 1107 AESFRDFQCSQIVKC-ELEMAEKIYNDVVAAHPKHLQANLLLIQNIESNQLKSQLPLTFVNAQKTSPPEAGESADKQKED 1185 (1354)
T ss_dssp HHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHSSCCCCHHHHHHTTSCCCSSCTTHHHHTTHH
T ss_pred HHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHCCccHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccchh
Q ss_pred -----hhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHCCCCCCHHhHHHHHHHHHh--------
Q 006744 429 -----KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL-EACECHNKIIEMSQVPSVAAYNCLTKGLCK-------- 494 (632)
Q Consensus 429 -----~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-------- 494 (632)
....++.+..-+ -.+..--..|+..|....+.+ .|.++-.+|.+.. +.|++++++
T Consensus 1186 ~~~~~~~~~~ii~~ad~---vi~~id~~~l~~~~g~k~d~~~~a~k~k~~m~~~k--------~~l~~al~~k~~ala~~ 1254 (1354)
T 3lxu_X 1186 QKKVRSALERIVKLADK---VIQETDSEALLSYYGLKNDTRADAAKIKTNMDKQK--------NTLIEALSKKGIAVAKL 1254 (1354)
T ss_dssp HHHHHHHHHHHHHHHHH---TTCHHHHTTTSTTCCSTHHHHCSSSCCHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH---HHHhcCHHHHHHHhcCCCCCchHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q ss_pred -------cCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006744 495 -------IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567 (632)
Q Consensus 495 -------~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 567 (632)
....++-.+.|.++.+- -..-|.......++.....+++..|++++.++.+. ++....|..++..+...|
T Consensus 1255 ~~~~~~~~~~~~~~~~~~~el~k~-~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1255 AVLDDCIKDSLAEINELYTEIIKF-VDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG 1331 (1354)
T ss_dssp HHHHTCSGGGHHHHHHHHHHHTTS-SCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS
T ss_pred HhhhhhhhhHHHHHHHHHHHHHhh-cccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC
Q ss_pred CHHHHHHHHHHHH
Q 006744 568 TLEEARKVFTNLR 580 (632)
Q Consensus 568 ~~~~A~~~~~~m~ 580 (632)
|+.-..+.+++.
T Consensus 1332 -w~h~~~~~~~~~ 1343 (1354)
T 3lxu_X 1332 -HEHIRTVINRMM 1343 (1354)
T ss_dssp -CHHHHHHHHHHH
T ss_pred -CHHHHHHHHhhh
No 312
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.88 E-value=86 Score=27.19 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 006744 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEV 445 (632)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 445 (632)
.|......+...|++.+|.++|..-++.+-.|
T Consensus 152 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 152 FYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34444444444444444444444444443333
No 313
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=33.79 E-value=2.7e+02 Score=25.23 Aligned_cols=18 Identities=6% Similarity=-0.020 Sum_probs=9.7
Q ss_pred CChhHHHHHHHHHHh-CCC
Q 006744 217 RNLDACLRVWEEMKK-DLV 234 (632)
Q Consensus 217 g~~~~A~~~~~~m~~-~~~ 234 (632)
|+.++|.+++.++.. .|.
T Consensus 241 ~~~~~a~~~l~~l~~~~g~ 259 (319)
T 2chq_A 241 GNFMEARELLDRLMVEYGM 259 (319)
T ss_dssp TCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHHcCC
Confidence 555555555555554 443
No 314
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=33.29 E-value=1.1e+02 Score=26.21 Aligned_cols=19 Identities=26% Similarity=0.050 Sum_probs=10.9
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 006744 210 IRVLAAERNLDACLRVWEE 228 (632)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~ 228 (632)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445566666666665554
No 315
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=32.97 E-value=1.6e+02 Score=24.37 Aligned_cols=100 Identities=13% Similarity=0.050 Sum_probs=55.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHH---hHHHHHHHHHh-cCChhHHHHHHHHHHHcCCcccHHh---HHHHH
Q 006744 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVM---AYVTLIMGLCK-GGRVVRGHELFREMKENGILIDRAI---YGVLI 280 (632)
Q Consensus 208 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li 280 (632)
+.+...+..|+.+.-.++.+.+.+.|..++.. -++.|..++.. ..+.....++.+.+.+.|..++... .++.+
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpL 119 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTT
T ss_pred CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHH
Confidence 44555667787777778888888888766543 23333333322 2344556778888888887765432 11223
Q ss_pred HHHHhcCCH-HHHHHHHHHHHH-CCCCCC
Q 006744 281 EGLVGEGKV-GKACDLLKDLVD-SGYRAD 307 (632)
Q Consensus 281 ~~~~~~g~~-~~a~~~~~~m~~-~g~~~~ 307 (632)
...+..|.. ..-..+++.+.+ .|..++
T Consensus 120 h~A~~~~~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp GGGGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence 333333322 234455555665 555443
No 316
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=32.46 E-value=1.9e+02 Score=23.06 Aligned_cols=59 Identities=10% Similarity=0.030 Sum_probs=32.6
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCC
Q 006744 404 LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462 (632)
Q Consensus 404 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 462 (632)
+.+.|...+.--..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 18 l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 44455444444555556665555566677777777665545555555555555555543
No 317
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=32.07 E-value=1.7e+02 Score=24.99 Aligned_cols=26 Identities=4% Similarity=-0.183 Sum_probs=15.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC
Q 006744 349 LLVCCAEMGRMDNFFKLLAQMEKLKF 374 (632)
Q Consensus 349 ll~~~~~~~~~~~a~~~~~~~~~~~~ 374 (632)
.+...+..|+.+.+..+++.+.+.|.
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 33444556666666666666666554
No 318
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=31.90 E-value=1.8e+02 Score=25.35 Aligned_cols=24 Identities=4% Similarity=-0.067 Sum_probs=12.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC
Q 006744 211 RVLAAERNLDACLRVWEEMKKDLV 234 (632)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~m~~~~~ 234 (632)
...++.|+.+.+..+++.+.+.|.
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~ 30 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSK 30 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 334455666655555555555443
No 319
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.89 E-value=1.2e+02 Score=24.18 Aligned_cols=61 Identities=18% Similarity=0.129 Sum_probs=34.7
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCCh
Q 006744 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359 (632)
Q Consensus 298 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 359 (632)
.+.+.|++.+.. -..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345556654432 2344455555555666777777776666555666666566666655543
No 320
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=31.50 E-value=1.5e+02 Score=25.42 Aligned_cols=151 Identities=13% Similarity=0.061 Sum_probs=77.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC----CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHH----------
Q 006744 209 MIRVLAAERNLDACLRVWEEMKKDL----VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA---------- 274 (632)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---------- 274 (632)
.+...+..|+.+-+..+++.-.... ...|..-++ .+...+..|+.+ +++.+.+.|..++..
T Consensus 40 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~ 114 (232)
T 2rfa_A 40 ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT-ALHIAVINQNVN----LVRALLARGASVSARATGSVFHYRP 114 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCCSGGGSCCT
T ss_pred HHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcC-HHHHHHHcCCHH----HHHHHHhCCCCCCcccCCcceeecc
Confidence 3444567788776666665422210 011112222 344445567654 444445556554432
Q ss_pred -----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHccCCHHHHHHHHHHHHhCCCCC------
Q 006744 275 -----IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI--YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP------ 341 (632)
Q Consensus 275 -----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p------ 341 (632)
.-.+.+...+..|+.+-+ +.+.+.|..++... -.+-+...+..|+.+-+..+++.+.+.|..+
T Consensus 115 ~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~ 190 (232)
T 2rfa_A 115 HNLIYYGEHPLSFAACVGSEEIV----RLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLE 190 (232)
T ss_dssp TCSCCCCSSHHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGG
T ss_pred cccccCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhh
Confidence 122344455566776544 44445555443221 1234555677888888888888888777543
Q ss_pred ---CHhcHHHHHHHHHhcCChhHHHHHHHHH
Q 006744 342 ---DFSTVNPLLVCCAEMGRMDNFFKLLAQM 369 (632)
Q Consensus 342 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 369 (632)
|....+ -+...+..|+.+-+..+++.-
T Consensus 191 ~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 191 LVPNNQGLT-PFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp GCCCTTSCC-HHHHHHHHTCHHHHHHHHHHH
T ss_pred ccCCCCCCC-HHHHHHHcCCHHHHHHHHhcC
Confidence 222233 334445566666555555443
No 321
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.27 E-value=2.6e+02 Score=24.21 Aligned_cols=52 Identities=10% Similarity=0.187 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744 535 EKIIEVLNEMTQEGCPP-NEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586 (632)
Q Consensus 535 ~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 586 (632)
+.+.++|..|..+|+-- -...|......+...|++++|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 57778999999887644 45578888888899999999999999999988877
No 322
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=31.01 E-value=78 Score=27.85 Aligned_cols=15 Identities=7% Similarity=0.073 Sum_probs=7.0
Q ss_pred HHhcCChhhHHHHHH
Q 006744 422 LLEIGEVKKALYLFG 436 (632)
Q Consensus 422 ~~~~g~~~~A~~~~~ 436 (632)
.+..|+.+-+..+++
T Consensus 228 A~~~g~~~~v~~Ll~ 242 (256)
T 2etb_A 228 AAKEGKIEIFRHILQ 242 (256)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHh
Confidence 344555554444444
No 323
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=30.05 E-value=1.8e+02 Score=29.11 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=9.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhC
Q 006744 527 HVCRSGEAEKIIEVLNEMTQE 547 (632)
Q Consensus 527 ~~~~~g~~~~a~~~~~~m~~~ 547 (632)
-|.+.|++-+|.+++..+-..
T Consensus 226 yy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 226 YYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp HHHHCCSHHHHHHHHHHHHSS
T ss_pred HHHHcccHHHHHHHHHHHHhC
Confidence 334445555555544444444
No 324
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=29.70 E-value=2.2e+02 Score=22.88 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=8.7
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 006744 281 EGLVGEGKVGKACDLLKDLV 300 (632)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~m~ 300 (632)
..+++.|+.+.+...+..+.
T Consensus 101 E~~~~~~~~~~~~~~l~~l~ 120 (153)
T 3us6_A 101 RNFCEEQNIDACRRCLQQVK 120 (153)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444
No 325
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.52 E-value=5.8e+02 Score=27.76 Aligned_cols=90 Identities=13% Similarity=-0.079 Sum_probs=40.8
Q ss_pred HHHHHHhcCCh---hHHHHHHHHHHHCC--CCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 006744 349 LLVCCAEMGRM---DNFFKLLAQMEKLK--FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALL 423 (632)
Q Consensus 349 ll~~~~~~~~~---~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 423 (632)
++...|..|.. +.|.+.|+.....+ ....+.+...+.....+.|..++-..+++...... +..--..++.+++
T Consensus 692 ~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~--~~~ek~~ll~aL~ 769 (909)
T 4fke_A 692 AISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQ--LVNEADKLRSALA 769 (909)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCC--SHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccC--CHHHHHHHHHHhC
Confidence 44555555553 34555555544432 12223333333333334455444444555544432 2223344555555
Q ss_pred hcCChhhHHHHHHHHhh
Q 006744 424 EIGEVKKALYLFGKMRG 440 (632)
Q Consensus 424 ~~g~~~~A~~~~~~m~~ 440 (632)
...+.+...++++....
T Consensus 770 ~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 770 CSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp TCCCHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 55555555555555443
No 326
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=29.48 E-value=1.6e+02 Score=25.16 Aligned_cols=13 Identities=15% Similarity=0.156 Sum_probs=5.1
Q ss_pred HhcCChhHHHHHH
Q 006744 249 CKGGRVVRGHELF 261 (632)
Q Consensus 249 ~~~g~~~~a~~~~ 261 (632)
++.|+++....++
T Consensus 14 ~~~g~~~~v~~ll 26 (231)
T 3aji_A 14 AYSGKLDELKERI 26 (231)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHH
Confidence 3334444433333
No 327
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=28.91 E-value=96 Score=20.19 Aligned_cols=40 Identities=10% Similarity=0.041 Sum_probs=26.3
Q ss_pred hhCCCChHHHHHHHhcCC-ChhHHHHHHHHhhhcCCCCCCH
Q 006744 113 KLRRVTPDLVAEVLKVEN-NPTLASKFFHWAGKQKGYKHNF 152 (632)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~-~~~~A~~~~~~~~~~~~~~~~~ 152 (632)
.....+..--...|...+ |++.|+..|..+.....++++.
T Consensus 16 ~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 16 TQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp HHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred HHHCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 334455554445555555 8899999998877666677764
No 328
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.72 E-value=2.2e+02 Score=22.53 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=31.9
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCC
Q 006744 404 LKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462 (632)
Q Consensus 404 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 462 (632)
+.+.|......-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 13 l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 33444443333444555555555555667777777665545555555555555555543
No 329
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.30 E-value=1.9e+02 Score=22.49 Aligned_cols=57 Identities=9% Similarity=-0.030 Sum_probs=30.1
Q ss_pred hCCCCChhHHHHHHHHHHhcC-ChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCC
Q 006744 406 GKGYSSVPIYNILMGALLEIG-EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462 (632)
Q Consensus 406 ~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 462 (632)
+.|......-..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 11 ~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 11 KAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 344443333444555555544 455667777776666555555555555555555543
No 330
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=28.12 E-value=2.6e+02 Score=23.18 Aligned_cols=80 Identities=15% Similarity=-0.014 Sum_probs=32.8
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006744 236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315 (632)
Q Consensus 236 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 315 (632)
++...-...+.++.+.++.+ +...+..+.. .++..+-...+.++.+.|+.+ +...+..+... ++..+-...+
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~ 159 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAA 159 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTC---SSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcC---CCHHHHHHHH
Confidence 44444445555555555432 2222222222 234444444455555554422 22333333321 2444444444
Q ss_pred HHHHccCC
Q 006744 316 GGLCRVKQ 323 (632)
Q Consensus 316 ~~~~~~g~ 323 (632)
.++.+.|.
T Consensus 160 ~aL~~~~~ 167 (201)
T 3ltj_A 160 DALGEIGG 167 (201)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhCc
Confidence 44444443
No 331
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.06 E-value=1.3e+02 Score=23.51 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=34.8
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCCh
Q 006744 299 LVDSGYRADLGIYNSIIGGLCRVK-QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359 (632)
Q Consensus 299 m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 359 (632)
+.+.|.+.+.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44556654433 234455555555 5667777777777766666666666666666665543
No 332
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.01 E-value=2.4e+02 Score=22.89 Aligned_cols=16 Identities=6% Similarity=-0.029 Sum_probs=8.7
Q ss_pred hcCChhHHHHHHHHHH
Q 006744 215 AERNLDACLRVWEEMK 230 (632)
Q Consensus 215 ~~g~~~~A~~~~~~m~ 230 (632)
+.|+...|..++.+..
T Consensus 87 ~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 87 DFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HHCCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 3455555555555543
No 333
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=27.95 E-value=3.6e+02 Score=24.87 Aligned_cols=48 Identities=13% Similarity=0.016 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744 464 LEACECHNKIIEMSQVPS--VAAYNCLTKGLCKIGEIDAAMMLVRDCLGN 511 (632)
Q Consensus 464 ~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 511 (632)
....++-..+....+.|. .-+...-|....+.+++..|..+-+++++.
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel 236 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKI 236 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 333444444444444443 223334455555566666666555555543
No 334
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.80 E-value=4.7e+02 Score=26.12 Aligned_cols=65 Identities=9% Similarity=-0.080 Sum_probs=38.4
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCH--hcHH-HHHHHHHhcCChhHHHHHHHHHHHC
Q 006744 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL-APDF--STVN-PLLVCCAEMGRMDNFFKLLAQMEKL 372 (632)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~ 372 (632)
...+|.+++.|...+.++.|..+..+..--.. .++. .+|. .+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45677778888888888888888877642100 1111 2222 2334555666777777666666554
No 335
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.78 E-value=1.7e+02 Score=23.16 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=28.5
Q ss_pred hCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCC
Q 006744 406 GKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462 (632)
Q Consensus 406 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 462 (632)
+.|...+.--..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 12 ~~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 12 QRGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp TTTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HcCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 334333333344444444444 45666666666665555555555555555555443
No 336
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.59 E-value=1.4e+02 Score=25.72 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=6.2
Q ss_pred HHHHHhcCChhHH
Q 006744 210 IRVLAAERNLDAC 222 (632)
Q Consensus 210 i~~~~~~g~~~~A 222 (632)
+...+..|+.+-+
T Consensus 48 L~~A~~~~~~~~v 60 (237)
T 3b7b_A 48 LMEAAENNHLEAV 60 (237)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHhCCHHHH
Confidence 3334455665433
No 337
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=27.01 E-value=92 Score=27.75 Aligned_cols=55 Identities=11% Similarity=0.001 Sum_probs=32.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCc-------CHHhHHHHHHHHH--hcCChhHHHHHHHHH
Q 006744 210 IRVLAAERNLDACLRVWEEMKKDLVEA-------DVMAYVTLIMGLC--KGGRVVRGHELFREM 264 (632)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~~~~~p-------~~~~~~~li~~~~--~~g~~~~a~~~~~~m 264 (632)
+...++.|+.+.+..+++...+.+... |..-++.|..++. +.|+.+-+..+++.-
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 344567788888888888776655322 2333444554443 246766666666553
No 338
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=26.99 E-value=77 Score=28.29 Aligned_cols=23 Identities=4% Similarity=-0.042 Sum_probs=13.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCC
Q 006744 247 GLCKGGRVVRGHELFREMKENGI 269 (632)
Q Consensus 247 ~~~~~g~~~~a~~~~~~m~~~~~ 269 (632)
..++.|+.+.+..+++...+.+.
T Consensus 19 ~A~~~g~~~~v~~Ll~~~~~~~~ 41 (273)
T 2pnn_A 19 DAVAQSNCQELESLLPFLQRSKK 41 (273)
T ss_dssp HHHHTTCSSTTTTHHHHHHHSCC
T ss_pred HHHHcCCHHHHHHHHHHHhhccc
Confidence 34455666666666666555543
No 339
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=26.97 E-value=5.5e+02 Score=26.64 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=10.7
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 006744 244 LIMGLCKGGRVVRGHELFRE 263 (632)
Q Consensus 244 li~~~~~~g~~~~a~~~~~~ 263 (632)
+|--|.|.|++++|.++.++
T Consensus 158 ~IyY~LR~G~~~~A~e~~~~ 177 (661)
T 2qx5_A 158 LIFYLLRAGLIKEALQVLVE 177 (661)
T ss_dssp HHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHH
Confidence 34445555555555555544
No 340
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=25.75 E-value=3.8e+02 Score=24.43 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=11.0
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 006744 208 AMIRVLAAERNLDACLRVWE 227 (632)
Q Consensus 208 ~li~~~~~~g~~~~A~~~~~ 227 (632)
+.+...++.|+++-+..+++
T Consensus 27 t~L~~Av~~g~~~~V~~LL~ 46 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLE 46 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHH
Confidence 34444566777665555443
No 341
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=25.63 E-value=5.3e+02 Score=26.02 Aligned_cols=293 Identities=10% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHH-----HHhCCChhHHhHHHHHHHhcCCHHHHHHHHH-----HHHhCCCCcCHH
Q 006744 135 ASKFFHWAGKQKGYKHNFASYNALAYC-----LSRNNLFRAADQVPELMDSQGRIAEMLEILE-----KMRRNLCKPDVF 204 (632)
Q Consensus 135 A~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~-----~m~~~~~~~~~~ 204 (632)
...+.+|. ++....|+...-..++.. ...--....-+.+...+.-+|.+++|..+++ .-.+........
T Consensus 205 ~e~Ll~WV-N~~d~eP~~E~~~eVm~~~~~~~~~~P~eHp~FW~~v~~LvLRGl~~qA~~~L~~s~~~~~L~~~~~~~~~ 283 (570)
T 3f3f_C 205 IESLLNWI-NRSDGEPDEEYIEQVFSVKDSTAGKKVFETQYFWKLLNQLVLRGLLSQAIGCIERSDLLPYLSDTCAVSFD 283 (570)
T ss_dssp HHHHHHHH-HHHCCCSCHHHHHHHTTC----CCSSSSCSHHHHHHHHHHHHTTCHHHHHHHHTTTTTTHHHHHSCHHHHH
T ss_pred HHHHHHHH-HhccCCCCHHHHHHHHhcccccCCCCCCCCccHHHHHHHHHHcccHHHHHHHHHhcccchhhcccChHHHH
Q ss_pred hHHHHHHHHHhcCCh---------hHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhc-CChhHHHHH--------------
Q 006744 205 AYTAMIRVLAAERNL---------DACLRVWEEMKKDLVEADVMAYVTLIMGLCKG-GRVVRGHEL-------------- 260 (632)
Q Consensus 205 ~~~~li~~~~~~g~~---------~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~-------------- 260 (632)
.+.-++..+.+.-.. ..+.++-+.+.......+...+..+=..+.-. |+-+...+.
T Consensus 284 ~i~dli~LL~~yP~~S~~~fr~WK~~~~e~r~~l~~~~~~i~~ei~~~Ledll~Il~Gd~~~Il~~~~tWYEal~allLy 363 (570)
T 3f3f_C 284 AVSDSIELLKQYPKDSSSTFREWKNLVLKLSQAFGSSATDISGELRDYIEDFLLVIGGNQRKILQYSRTWYESFCGFLLY 363 (570)
T ss_dssp HHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHTSCCCSCHHHHHHHHHHHHHHHTCHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHcCCHHHHHHHcccHHHHHhHheee
Q ss_pred ----------HHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH------
Q 006744 261 ----------FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF------ 324 (632)
Q Consensus 261 ----------~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~------ 324 (632)
+-++.-....||...-.-.+-+..-.|++..++..++.+-.. .......|+........+
T Consensus 364 ~~Pt~k~~~~y~q~al~~~p~d~~~~~E~~~~~i~egni~~VL~~lq~ld~~----~AA~vAdLle~~GlLe~~~~~~~~ 439 (570)
T 3f3f_C 364 YIPSLELSAEYLQMSLEANVVDITNDWEQPCVDIISGKIHSILPVMESLDSC----TAAFTAMICEAKGLIENIFEGEKN 439 (570)
T ss_dssp TCCCGGGHHHHHHHHHHHSCCCTTSSSHHHHHHHHTTCCGGGHHHHHHHCHH----HHHHHHHHHHHHTSSCCCCCC---
T ss_pred ecCcccccHHHHHHHHHhCCCCcccHHHHHHHHHHccCHHHHHHHHHHhhHH----HHHHHHHHHHHhCcccchhhhccc
Q ss_pred ------------HHHH---------HHHHHHHhCCCCCCHhcHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCccccHH
Q 006744 325 ------------DKAY---------KLFEVTVQDDLAPDFSTVNPLLVCCA--EMGRMDNFFKLLAQMEKLKFSVAADLE 381 (632)
Q Consensus 325 ------------~~A~---------~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~ 381 (632)
+..+ -+.+.......--+...|..-+..+. ...+.+.....+.+++.+-.--+..-.
T Consensus 440 ~~~l~~~~~~~~d~l~s~~~~l~eyLL~~~a~~~~~~~~~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~ 519 (570)
T 3f3f_C 440 SDDYSNEDNEMLEDLFSYRNGMASYMLNSFAFELCSLGDKELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDI 519 (570)
T ss_dssp -----------CCCSSSSSSCHHHHHHHHHHHHHHTSCCTTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHH
T ss_pred cccccccccccHhhhhcCcchHHHHHHHHHHhhcccccCCcchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHH
Q ss_pred HHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHH
Q 006744 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALY 433 (632)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 433 (632)
..++.+|.+.|-.+.|.++++.+..+-..+...| ..+..|+++|+++.+..
T Consensus 520 e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~Vk~ 570 (570)
T 3f3f_C 520 EWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYELVKS 570 (570)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhhccC
No 342
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.62 E-value=1.4e+02 Score=23.95 Aligned_cols=61 Identities=21% Similarity=0.202 Sum_probs=34.6
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCCh
Q 006744 298 DLVDSGYRADLGIYNSIIGGLCRVK-QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359 (632)
Q Consensus 298 ~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 359 (632)
.+.+.|++.+.. -..++..+...+ ..-.|.++++.+.+.+...+..|....|+.+...|-+
T Consensus 7 ~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 345556554433 233445555554 5566777777777666555666666666666665543
No 343
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=25.22 E-value=79 Score=21.09 Aligned_cols=44 Identities=11% Similarity=0.143 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh
Q 006744 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250 (632)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 250 (632)
++.++..++...-+++++..+++..+.| ..+..+|.--++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4445555555555566666666665555 3444444444444443
No 344
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=25.05 E-value=3e+02 Score=22.96 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=8.2
Q ss_pred CCHHhHHHHHHHHHhcCC
Q 006744 480 PSVAAYNCLTKGLCKIGE 497 (632)
Q Consensus 480 p~~~~~~~li~~~~~~g~ 497 (632)
++..+-...+.++.+.|.
T Consensus 124 ~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 344444444444444444
No 345
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.89 E-value=1.1e+02 Score=24.26 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=33.8
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCC
Q 006744 298 DLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR 358 (632)
Q Consensus 298 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 358 (632)
.+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-|+.+...|-
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 344556654433 233444444445 56677777777766666666666666666666554
No 346
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.82 E-value=1.5e+02 Score=24.97 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=14.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 006744 559 IISGMCKHGTLEEARKVFTNLRER 582 (632)
Q Consensus 559 l~~~~~~~g~~~~A~~~~~~m~~~ 582 (632)
.+..|.+.|.+++|.++|++....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHccchHHHHHHHHHHhcC
Confidence 344566667777777776665444
No 347
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=24.64 E-value=2.7e+02 Score=22.34 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744 535 EKIIEVLNEMTQEGCPP-NEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586 (632)
Q Consensus 535 ~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 586 (632)
+++.++|..|..+|+-- -...|......+...|++++|.++|+.-++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34788888888887644 45577888888889999999999999999988877
No 348
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.99 E-value=3.3e+02 Score=23.05 Aligned_cols=92 Identities=13% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHhc---CChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006744 244 LIMGLCKG---GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK-----VGKACDLLKDLVDSGYRADLGIYNSII 315 (632)
Q Consensus 244 li~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~g~~~~~~~~~~li 315 (632)
+|+++.+. .+.+.|+-.+.+|.+.| .|.-..-..++-+.-..|. +..|...++.....|..--.......+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 95 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVV 95 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 006744 316 GGLCRVKQFDKAYKLFEVTVQ 336 (632)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~ 336 (632)
-.++..-+-..+...++...+
T Consensus 96 iyLA~aPKSNs~y~A~~~A~~ 116 (204)
T 2r9g_A 96 VDLCLSPKSNSAYMALDAALA 116 (204)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 349
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.81 E-value=2.2e+02 Score=22.72 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcC-ChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCC
Q 006744 415 YNILMGALLEIG-EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462 (632)
Q Consensus 415 ~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 462 (632)
-..++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 19 R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 19 RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 334444444443 445566666666655544455555444555555443
No 350
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=23.59 E-value=3.1e+02 Score=22.61 Aligned_cols=47 Identities=9% Similarity=0.003 Sum_probs=18.4
Q ss_pred HHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006744 431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478 (632)
Q Consensus 431 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 478 (632)
+..+++.+.+.|+--|..--...+....+.|.+ ....+-.++...|+
T Consensus 52 ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI 98 (177)
T 3e3v_A 52 ISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGI 98 (177)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCC
Confidence 344444455554433333333333333332221 12334444444454
No 351
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=23.45 E-value=3.6e+02 Score=23.24 Aligned_cols=161 Identities=8% Similarity=-0.008 Sum_probs=0.0
Q ss_pred CCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCcccHHhH
Q 006744 198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG-RVVRGHELFREMKENGILIDRAIY 276 (632)
Q Consensus 198 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~ 276 (632)
|...|...|..+........-...|+.++ .--..+-.-|-.-+.+.| ..+.+..+++.+.+.|+.-|...-
T Consensus 43 g~el~~e~~~~i~~~~~~~~a~~~Al~~L--------s~r~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA 114 (221)
T 3d5l_A 43 GTELDEKQIAAIATADQQAKAYSRMLDYL--------SYQMRTESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYA 114 (221)
T ss_dssp TCEECHHHHHHHHHHHHHHHHHHHHHHHH--------TTSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHHHHh--------ccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHH
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HhcHHHHHHHHHh
Q 006744 277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD-FSTVNPLLVCCAE 355 (632)
Q Consensus 277 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~ 355 (632)
...+....+.+.+ ....+-.++...|+ +..+....+..+......+.|..+.++-.......+ .....-++..+.+
T Consensus 115 ~~~v~~~~~~~~~-G~~~I~~eL~~KGI--~~~~I~~al~~~~~~~e~e~a~~l~~Kk~~~~~~~~~~~~k~K~~~~L~r 191 (221)
T 3d5l_A 115 ASYVRTMINTDLK-GPGIIRQHLRQKGI--GESDIDDALTQFTPEVQAELAKKLALKLFRRYRNQPERRREQKVQQGLTT 191 (221)
T ss_dssp HHHHHHHHHHCCC-CHHHHHHHHHHTTC--CHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc-cHHHHHHHHHHcCC--CHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHh
Q ss_pred cC-ChhHHHHHHHHH
Q 006744 356 MG-RMDNFFKLLAQM 369 (632)
Q Consensus 356 ~~-~~~~a~~~~~~~ 369 (632)
.| .++.+..+++.+
T Consensus 192 rGFs~~~I~~vl~~~ 206 (221)
T 3d5l_A 192 KGFSSSVYEMIKDEV 206 (221)
T ss_dssp TTCCHHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHhc
No 352
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=23.02 E-value=5.3e+02 Score=25.11 Aligned_cols=151 Identities=8% Similarity=-0.040 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHH--------CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC----CCCHhcHHHHHHHHHh
Q 006744 288 KVGKACDLLKDLVD--------SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL----APDFSTVNPLLVCCAE 355 (632)
Q Consensus 288 ~~~~a~~~~~~m~~--------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~ll~~~~~ 355 (632)
..++...+++.... .++..+......++.. ..|+..+++.+++.+..... .....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Q ss_pred c------------------------CChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhccc-----HHHHHHHHHHHHh
Q 006744 356 M------------------------GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEER-----IMMALDVFEELKG 406 (632)
Q Consensus 356 ~------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~ 406 (632)
. ++.+.|..++.+|.+.|.+|.......+..++..-|. +..|...++....
T Consensus 244 ~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~ 323 (447)
T 3pvs_A 244 RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTR 323 (447)
T ss_dssp CCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHH
T ss_pred hhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Q ss_pred CCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 006744 407 KGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRG 440 (632)
Q Consensus 407 ~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 440 (632)
-|.+ ........+-.++..-+...+..-++...+
T Consensus 324 ~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~a~~ 358 (447)
T 3pvs_A 324 VGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALA 358 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
No 353
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.92 E-value=1.3e+02 Score=23.07 Aligned_cols=41 Identities=10% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 006744 225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265 (632)
Q Consensus 225 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 265 (632)
+|+.+....+.+++..--.-|..+...++++.|.+++..+.
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
No 354
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.74 E-value=1.6e+02 Score=23.90 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=36.1
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHhcHHHHHHHHHhcCCh
Q 006744 299 LVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD--DLAPDFSTVNPLLVCCAEMGRM 359 (632)
Q Consensus 299 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~ 359 (632)
+.+.|++.+. .-..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+
T Consensus 24 L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 24 LRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445665433 3345556666666667777777777665 5555666666666666666643
No 355
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=22.72 E-value=5.5e+02 Score=25.19 Aligned_cols=16 Identities=13% Similarity=-0.060 Sum_probs=6.5
Q ss_pred hhhcccHHHHHHHHHH
Q 006744 388 VGKEERIMMALDVFEE 403 (632)
Q Consensus 388 ~~~~g~~~~a~~~~~~ 403 (632)
+...|++++|-++-..
T Consensus 371 l~~~g~y~~AA~~aA~ 386 (494)
T 1bpo_A 371 LFAQGNYSEAAKVAAN 386 (494)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHh
Confidence 3333444444444333
No 356
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.58 E-value=3.1e+02 Score=22.26 Aligned_cols=60 Identities=12% Similarity=-0.095 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCc--CHHHHHHHHH-H-----HHHcCCHHHHHHHHHHHHH
Q 006744 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEV--NSLSFSIAIQ-C-----HVESGDILEACECHNKIIE 475 (632)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~-~-----~~~~g~~~~a~~~~~~~~~ 475 (632)
|..-+..|.. |++-+|-++|++.=...-.+ +...|..||+ . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3333333333 78888888888776554344 4445555555 2 2345677777776666654
No 357
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=22.02 E-value=3.4e+02 Score=22.41 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=7.9
Q ss_pred cCHHHHHHHHHHHHHcCC
Q 006744 445 VNSLSFSIAIQCHVESGD 462 (632)
Q Consensus 445 p~~~t~~~ll~~~~~~g~ 462 (632)
++...-...+.++.+.++
T Consensus 88 ~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 344444444444444444
No 358
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=21.17 E-value=4.7e+02 Score=23.76 Aligned_cols=248 Identities=9% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 006744 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321 (632)
Q Consensus 242 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 321 (632)
...+...++.|+.+....++.. ....+......-.+.+...+..|+.+-+..+++.-..-... +..-++.|..+....
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g 102 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK-DKGGLVPLHNACSYG 102 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTT
T ss_pred chhHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCcHHHHHHHCC
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhcHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCccc---------------------
Q 006744 322 KQFDKAYKLFEVTVQDDLAPDFSTVN--PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA--------------------- 378 (632)
Q Consensus 322 g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------- 378 (632)
. .++++.+.+.|..++..... +.+...+..|+ .++++.+.+.|..++.
T Consensus 103 ~-----~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~ 173 (351)
T 3utm_A 103 H-----YEVTELLLKHGACVNAMDLWQFTPLHEAASKNR----VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173 (351)
T ss_dssp C-----HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHH
T ss_pred C-----HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHH
Q ss_pred --cHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHH--HHHH
Q 006744 379 --DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF--SIAI 454 (632)
Q Consensus 379 --~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~--~~ll 454 (632)
......+...+..++.+....++..-......+..-.+.+..+..... ..-.++++.+.+.|..++.... .+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~--~~~~~~~~~Ll~~g~~~~~~~~~g~t~L 251 (351)
T 3utm_A 174 TYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLH--PKRKQVAELLLRKGANVNEKNKDFMTPL 251 (351)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCS--TTHHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred HhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhC--ccHHHHHHHHHHcCCCcCCcCCCCCCHH
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHhH--HHHHHHHHhcCCHHHHHHHHH
Q 006744 455 QCHVESGDILEACECHNKIIEMSQVPSVAAY--NCLTKGLCKIGEIDAAMMLVR 506 (632)
Q Consensus 455 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~ 506 (632)
...+..|+. ++.+.+.+.|..++.... .+.+...+..|+.+-+.-+++
T Consensus 252 ~~A~~~g~~----~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 301 (351)
T 3utm_A 252 HVAAERAHN----DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS 301 (351)
T ss_dssp HHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCCH----HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
No 359
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.83 E-value=3.6e+02 Score=22.27 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=31.2
Q ss_pred HHHHHH-HHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCc
Q 006744 206 YTAMIR-VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270 (632)
Q Consensus 206 ~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 270 (632)
|..|+. .+.-.|.+..++-++..+- ..+..-|..| +|-+..++..|+..++.+.+..+.
T Consensus 35 Y~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd 94 (242)
T 3kae_A 35 YRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVE 94 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSB
T ss_pred HHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccc
Confidence 444443 2345677777666554321 1222223322 445667777777777777755443
No 360
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=20.62 E-value=8.4e+02 Score=26.50 Aligned_cols=159 Identities=9% Similarity=0.028 Sum_probs=86.5
Q ss_pred HHHHHHHHhcCCh---hHHHHHHHHHHhCC----CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHH
Q 006744 207 TAMIRVLAAERNL---DACLRVWEEMKKDL----VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL 279 (632)
Q Consensus 207 ~~li~~~~~~g~~---~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 279 (632)
..++...|+.|.. +.|.+.|+.....+ +.||.. ..+...-.+.|..++-..+++...+.. +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 4566777777764 47788888776532 445543 233333445677777677777776653 33445667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc-CCHHHHHHHHHHHHh---CCCCCCHhcHHHHHHHHHh
Q 006744 280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV-KQFDKAYKLFEVTVQ---DDLAPDFSTVNPLLVCCAE 355 (632)
Q Consensus 280 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~---~~~~p~~~~~~~ll~~~~~ 355 (632)
+.+++-..+.+...++++............... ++.+...+ ...+.|.+++.+=.+ .........+..++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 788887888888888877766533211222222 33333332 223445555543211 1122234456777777665
Q ss_pred cCChhHHHHHHHHHHH
Q 006744 356 MGRMDNFFKLLAQMEK 371 (632)
Q Consensus 356 ~~~~~~a~~~~~~~~~ 371 (632)
.-.-++-.+-++...+
T Consensus 844 ~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 844 RFSSEFELQQLEQFKK 859 (909)
T ss_dssp TCCSHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHh
Confidence 5444444444444443
No 361
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.43 E-value=1.3e+02 Score=19.57 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=12.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCC
Q 006744 320 RVKQFDKAYKLFEVTVQDDLAP 341 (632)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~~~~p 341 (632)
..|+.+.|+..+-+|...+..|
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSC
T ss_pred cCCCHHHHHHHHHcCcCCCCCC
Confidence 3455666666665555444444
No 362
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=20.35 E-value=1.6e+02 Score=25.32 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=32.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcCH---HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHh--HHHHHHHHH
Q 006744 210 IRVLAAERNLDACLRVWEEMKKDLVEADV---MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI--YGVLIEGLV 284 (632)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~ 284 (632)
+...+..|+.+- ++.+.+.|..++. ..+ +.+...+..|+.+-+ +.+.+.|..++... -.+.+...+
T Consensus 15 L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 15 LHAAAEAGHVDI----CHMLVQAGANIDTCSEDQR-TPLMEAAENNHLEAV----KYLIKAGALVDPKDAEGSTCLHLAA 85 (237)
T ss_dssp HHHHHHHTCHHH----HHHHHHTTCCTTCCCTTCC-CHHHHHHHTTCHHHH----HHHHTTTCCCCCCCTTSCCHHHHHH
T ss_pred HHHHHHcCcHHH----HHHHHHcCCCcCccCCCCC-CHHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHHH
Confidence 444556677553 3444444543332 122 233444555665433 33444554433211 112333444
Q ss_pred hcCCHHHHH
Q 006744 285 GEGKVGKAC 293 (632)
Q Consensus 285 ~~g~~~~a~ 293 (632)
..|+.+-+.
T Consensus 86 ~~~~~~~~~ 94 (237)
T 3b7b_A 86 KKGHYEVVQ 94 (237)
T ss_dssp HTTCHHHHH
T ss_pred HcCCHHHHH
Confidence 556654333
No 363
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.29 E-value=2.5e+02 Score=22.72 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=30.5
Q ss_pred hCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC--CCCcCHHHHHHHHHHHHHcCC
Q 006744 406 GKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL--NLEVNSLSFSIAIQCHVESGD 462 (632)
Q Consensus 406 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~g~ 462 (632)
+.|...+.--..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 26 ~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 26 QGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 334443333455555555555566666676666655 444455555555555555553
No 364
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.11 E-value=5.7e+02 Score=28.01 Aligned_cols=52 Identities=10% Similarity=0.012 Sum_probs=34.1
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH
Q 006744 122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD 179 (632)
Q Consensus 122 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~ 179 (632)
+..-+...+.++.|.++..|.. .+...--.+..+|...|++++|..+|++..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~------~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC------SSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3344455667777777776653 344443456788888988888888887543
No 365
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.10 E-value=8.8e+02 Score=26.51 Aligned_cols=49 Identities=8% Similarity=-0.006 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC--ChhhHHHHHHHHhh
Q 006744 554 VICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA--NTIVYDEILIEHMK 602 (632)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~~~l~~~~~~ 602 (632)
.-|..++..+-+.|.++.+.++.+..++.--..++ .+-.+..++..+..
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence 36788888888888888888888887764322111 22356666666543
No 366
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=20.02 E-value=52 Score=22.04 Aligned_cols=6 Identities=33% Similarity=0.684 Sum_probs=3.2
Q ss_pred CCCCCC
Q 006744 1 MPPQTP 6 (632)
Q Consensus 1 ~~~~~~ 6 (632)
|+||||
T Consensus 3 m~pp~~ 8 (69)
T 2xk0_A 3 MAPPVA 8 (69)
T ss_dssp SSCSSS
T ss_pred CCCCCC
Confidence 455555
Done!