Query 006745
Match_columns 632
No_of_seqs 148 out of 201
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 13:52:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1356 Putative transcription 100.0 9E-158 2E-162 1308.9 25.9 479 35-623 404-884 (889)
2 PF02373 JmjC: JmjC domain, hy 99.5 3.4E-15 7.5E-20 131.2 4.4 86 472-571 29-114 (114)
3 PF13621 Cupin_8: Cupin-like d 99.0 6.2E-11 1.3E-15 116.2 0.2 40 536-575 207-249 (251)
4 smart00558 JmjC A domain famil 97.0 0.00033 7.3E-09 55.8 1.6 54 283-354 3-56 (57)
5 KOG2131 Uncharacterized conser 96.0 0.0049 1.1E-07 66.8 3.4 50 533-582 263-312 (427)
6 PF07883 Cupin_2: Cupin domain 93.8 0.025 5.4E-07 45.6 1.0 26 539-564 38-63 (71)
7 COG1917 Uncharacterized conser 93.4 0.021 4.5E-07 52.4 -0.2 52 508-564 57-108 (131)
8 KOG2130 Phosphatidylserine-spe 92.5 0.059 1.3E-06 57.9 1.5 43 536-578 261-303 (407)
9 COG0662 {ManC} Mannose-6-phosp 90.8 0.12 2.6E-06 47.9 1.5 42 537-578 74-115 (127)
10 TIGR03214 ura-cupin putative a 89.4 0.18 3.9E-06 52.4 1.6 30 533-562 213-242 (260)
11 PRK09943 DNA-binding transcrip 83.6 0.51 1.1E-05 46.0 1.2 55 516-575 129-183 (185)
12 COG4101 Predicted mannose-6-ph 81.8 1.1 2.3E-05 42.6 2.5 25 539-563 89-113 (142)
13 TIGR00218 manA mannose-6-phosp 81.2 0.77 1.7E-05 48.5 1.5 15 543-557 156-170 (302)
14 PRK15131 mannose-6-phosphate i 79.8 0.92 2E-05 50.1 1.6 33 525-557 216-256 (389)
15 PF01050 MannoseP_isomer: Mann 77.7 1.7 3.7E-05 42.1 2.5 22 543-564 107-128 (151)
16 PRK04190 glucose-6-phosphate i 77.1 1.8 3.8E-05 43.6 2.5 29 536-564 118-146 (191)
17 PRK13290 ectC L-ectoine syntha 74.1 2.3 4.9E-05 39.9 2.3 37 537-575 74-110 (125)
18 COG1482 ManA Phosphomannose is 73.4 1.8 3.8E-05 46.8 1.5 19 540-558 160-178 (312)
19 PLN02288 mannose-6-phosphate i 71.7 2 4.3E-05 47.7 1.5 18 540-557 253-270 (394)
20 KOG2508 Predicted phospholipas 68.8 4.3 9.4E-05 44.8 3.2 50 165-214 20-74 (437)
21 PRK15460 cpsB mannose-1-phosph 65.8 3.3 7.3E-05 47.0 1.8 30 534-563 420-449 (478)
22 PF08007 Cupin_4: Cupin superf 60.7 5.4 0.00012 42.6 2.1 41 538-578 176-216 (319)
23 TIGR03214 ura-cupin putative a 59.9 6.3 0.00014 41.1 2.4 47 512-563 77-123 (260)
24 PF00190 Cupin_1: Cupin; Inte 59.7 4.2 9.2E-05 38.1 1.0 33 539-571 81-119 (144)
25 TIGR01479 GMP_PMI mannose-1-ph 58.5 4.7 0.0001 45.4 1.3 29 535-563 412-440 (468)
26 PF02041 Auxin_BP: Auxin bindi 58.0 6.1 0.00013 38.9 1.8 41 517-562 75-115 (167)
27 smart00835 Cupin_1 Cupin. This 56.8 8.7 0.00019 36.1 2.6 53 510-562 46-99 (146)
28 PTZ00194 60S ribosomal protein 56.6 5.7 0.00012 38.6 1.3 43 511-555 18-60 (143)
29 TIGR03404 bicupin_oxalic bicup 52.7 9.3 0.0002 42.0 2.4 78 508-591 259-341 (367)
30 PF01238 PMI_typeI: Phosphoman 50.4 5.7 0.00012 43.6 0.3 17 541-557 253-269 (373)
31 PF02938 GAD: GAD domain; Int 49.7 5.9 0.00013 35.1 0.2 34 520-560 60-93 (95)
32 KOG2583 Ubiquinol cytochrome c 47.7 14 0.00029 41.5 2.6 47 145-192 157-206 (429)
33 KOG2107 Uncharacterized conser 44.9 16 0.00034 36.6 2.3 56 486-558 80-136 (179)
34 PRK01191 rpl24p 50S ribosomal 42.7 13 0.00027 35.3 1.3 42 511-554 17-58 (120)
35 PRK10371 DNA-binding transcrip 40.7 18 0.00039 38.1 2.2 33 532-564 58-90 (302)
36 PRK11171 hypothetical protein; 40.5 20 0.00043 37.6 2.4 28 535-562 98-125 (266)
37 PRK11171 hypothetical protein; 39.2 17 0.00037 38.0 1.7 31 532-562 217-247 (266)
38 KOG3905 Dynein light intermedi 39.1 13 0.00029 41.0 0.9 70 478-555 242-313 (473)
39 PRK13264 3-hydroxyanthranilate 37.7 15 0.00032 36.9 1.0 45 536-580 74-118 (177)
40 TIGR03037 anthran_nbaC 3-hydro 36.9 16 0.00034 36.2 0.9 46 536-581 68-113 (159)
41 PF08990 Docking: Erythronolid 36.3 26 0.00056 25.2 1.7 17 484-500 3-19 (27)
42 PF12852 Cupin_6: Cupin 34.4 23 0.0005 34.2 1.7 43 510-562 37-79 (186)
43 PF05899 Cupin_3: Protein of u 34.2 21 0.00046 30.2 1.2 17 539-555 45-61 (74)
44 KOG4822 Predicted nuclear memb 29.8 23 0.0005 44.3 1.0 58 33-91 275-345 (1906)
45 PRK15457 ethanolamine utilizat 29.2 30 0.00065 36.2 1.5 46 510-560 170-215 (233)
46 TIGR03404 bicupin_oxalic bicup 28.7 40 0.00086 37.2 2.5 28 536-563 108-135 (367)
47 PRK13305 sgbH 3-keto-L-gulonat 28.6 26 0.00057 35.9 1.0 47 565-621 6-53 (218)
48 TIGR01080 rplX_A_E ribosomal p 28.5 33 0.00072 32.2 1.6 43 511-555 13-55 (114)
49 PRK13501 transcriptional activ 27.8 33 0.00071 35.4 1.5 28 533-560 51-78 (290)
50 TIGR02297 HpaA 4-hydroxyphenyl 27.5 39 0.00085 34.4 2.1 30 533-562 57-86 (287)
51 PF06249 EutQ: Ethanolamine ut 26.2 49 0.0011 32.6 2.3 20 535-554 110-129 (152)
52 PRK13503 transcriptional activ 26.1 36 0.00078 34.4 1.5 31 533-563 48-78 (278)
53 PF02311 AraC_binding: AraC-li 24.4 47 0.001 28.8 1.7 46 533-579 36-83 (136)
54 PF14816 FAM178: Family of unk 23.1 48 0.001 37.0 1.8 29 520-549 62-91 (377)
55 PRK13502 transcriptional activ 22.7 63 0.0014 33.0 2.5 28 533-560 51-78 (282)
56 KOG2077 JNK/SAPK-associated pr 22.0 1.1E+02 0.0023 36.3 4.3 91 265-371 535-628 (832)
57 COG0184 RpsO Ribosomal protein 20.6 69 0.0015 29.0 2.0 57 520-602 2-58 (89)
58 PRK10296 DNA-binding transcrip 20.4 65 0.0014 32.8 2.1 26 533-558 56-81 (278)
59 PRK13306 ulaD 3-keto-L-gulonat 20.3 44 0.00096 34.0 0.8 47 565-621 6-53 (216)
60 PRK10314 putative acyltransfer 20.1 78 0.0017 30.0 2.4 35 518-559 111-146 (153)
No 1
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=100.00 E-value=8.6e-158 Score=1308.93 Aligned_cols=479 Identities=42% Similarity=0.660 Sum_probs=425.4
Q ss_pred cccCCCccCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCCCCCC-ceeccccCCchhHHHHHHHH
Q 006745 35 VDSTPETDSKFDTTPGTDSKVGSNPEKDSKGREKPISDWKANENGSILCPSIELGGCGN-VLELRCTFDENWVAELLRKA 113 (632)
Q Consensus 35 ~~~~~~~~~g~~y~~g~~~~~~~~~~~~~~~~~~~~~~W~a~~dGsI~Cpp~e~ggCg~-~L~L~~if~~~wi~~L~~~a 113 (632)
...+.|.+||.+|+||-++...++. +.....+.+ +|++|+|.|-|...+||+. .|+|+|++|..|.+.|+.+|
T Consensus 404 e~~~~~~~r~~~~~~g~~~~~~~~~---s~~~~~~~~---~~~ng~~r~l~~~~~g~~~~~l~lkr~lpn~~~s~i~~~v 477 (889)
T KOG1356|consen 404 ECELMLRSRGVKYEHGPDPIEPSLS---SVSVDEPSS---ANENGSLRDLLLSLAGCLDRGLKLKRILPNILDSIIASVV 477 (889)
T ss_pred hHHHHHHHHHHHhhcCccccccccC---CCCCCCCcc---cccccchhhcccccCccchhhhhhhhcCchHHHHHHHHHH
Confidence 3447799999999999876553333 222222222 9999999999999999999 99999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcccccCCCCCCccCCchhhhhhhcCCCCCCCceecCCCCCcCCCChHHHHHHHhcCCCEEEEe
Q 006745 114 EEIAKAHNLEDTPESSERVCTCYNPLGEIDMTNSELIKAASREDSTDNYLYNPAAKDIRHGDLKHFQWHWAKGEPVIVSN 193 (632)
Q Consensus 114 ee~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~r~aA~Re~s~dn~lycP~~~d~~~~~l~hFQ~hW~kGePVIVr~ 193 (632)
|.-+..+-..- ....|. ..+...+.++++|.|+.+.|||||||.+.+.+.+|+.|||+||++||||||||
T Consensus 478 E~k~~~~~~~~----~l~~~~------~~~~~~~~~~s~~~~~~~cdn~Ll~l~~d~~~~~n~~~FQEhWkqGqPViVs~ 547 (889)
T KOG1356|consen 478 ENKLTSKLSKP----PLRLCR------SSQDGSGLLLSAASHSWLCDNRLLSLKVDPLNQNNLKHFQEHWKQGQPVIVSG 547 (889)
T ss_pred HhhcccccCCc----hhhcCc------cccccccCccccCCCCcCCCCceecCccCccchhHHHHHHHHHhcCCcEEehH
Confidence 99888743333 233332 12346778899999999999999999998888899999999999999999999
Q ss_pred ccccccCCCCChhHHHHHHHHhhccc-cccccceeeeecCCCceeecchhhhhccccCCccCCCCCcceeecCCCCChhh
Q 006745 194 VLENALGLSWDPMVMWRACRQISNTK-HRLYLDVKAIDCLDWCEGEVNIHQFFKGYTDGRFDKESWPQILKLKDWPPSNL 272 (632)
Q Consensus 194 Vl~~~s~lsWeP~~mwra~~e~~~~~-~~~~~~vkaiDCld~~evei~i~qFf~Gy~~gr~~~~~wp~mLKLKDWPps~~ 272 (632)
|++++++++|+||+|||+|+++.+.. +..+.++.++||++ ++.+||.||++|+++++|||+|||||||||+++
T Consensus 548 V~~~l~g~lW~P~a~~~~~g~q~~~l~n~~~~~i~s~d~~~------~fwegFe~~~kr~~~~~g~p~vLKLKDWpp~~~ 621 (889)
T KOG1356|consen 548 VHKKLNGLLWKPEALSRAFGDQVVDLSNCNNSQIISNDCVD------NFWEGFEGYSKRLKSENGWPEVLKLKDWPPGED 621 (889)
T ss_pred hhhhccccccchHHHHHHhccchhhhhcCCCCCccccchhh------hHHHhhcccccCcccccCCeeEEeecCCCchHh
Confidence 99999999999999999999987666 56667788888888 789999999999999999999999999999999
Q ss_pred HHHhcchhhHHhhhCCCCcCccCCCCCcccccccCCCCCCCCCCCCceeeccccccccCCCCCcccccccccchhhhhhc
Q 006745 273 FEERLPRHNVEFLGCLPFKEYTHPCAGALNIATKLPKKSLKPDMGPKTYIAYGVAQELGRADSVTKLHCDMSDAVNVLTH 352 (632)
Q Consensus 273 F~e~LP~h~~eFi~aLP~~EYT~pr~G~LNLAakLP~~~lkPDLGPK~YIAYG~~eElGrGDSvTkLH~DmSDAVNIL~h 352 (632)
|+++||+||+|||++|||||||| |.|.||||++||.++++||||||||||||+++|+||||||||||||||||||||||
T Consensus 622 Fkd~lP~r~eell~sLPlpEYt~-r~G~LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr~~gtTnLH~dvSDaVNILvy 700 (889)
T KOG1356|consen 622 FKDMLPRRFEELLASLPLPEYTD-RDGKLNLASKLPEGFVRPDLGPKLYNAYGVSTELGRGDGTTNLHLDVSDAVNILVY 700 (889)
T ss_pred HhhhhhHHHHHHHHcCCchhhhc-CCCccchHhhCcccccCCCCCchhhhhccccccccCCCCceeeceehhhhhhheee
Confidence 99999999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCChhHHHHHHHHHHHHHhhhhhhhhcCCCCCcccccCCCCCCccccccCCCCCCCCCCCcccCCCcccccCCCCC
Q 006745 353 TTDVKLKPEHLAKIEKLKQQHKAQDQMEFFGCSQFSDENSHANSSAIPVKNEQCGGKPDDGDGVGVVPQDSQICDSMLND 432 (632)
Q Consensus 353 taev~~~~~~~~~i~kLk~~~~~qd~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~c~~~~~~ 432 (632)
|++++. +...|+++++++.++++.|....
T Consensus 701 v~e~~~---~~~~~~~~~k~~~~~~~de~~~~------------------------------------------------ 729 (889)
T KOG1356|consen 701 VGEPPG---QIEQIAKVLKKIQEGDLDEITRS------------------------------------------------ 729 (889)
T ss_pred eccCCc---hHHhHHHHHHhhhhcchhhhhhh------------------------------------------------
Confidence 999876 44556666666554443222111
Q ss_pred CccccchhhhhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCcceeeeecCCChHHHHHHHHHHHHhhcccccCCCCcccC
Q 006745 433 PIPVQRAISEEASEAIADLGKSRESGEPSNIPENEFESADGGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVIH 512 (632)
Q Consensus 433 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Efrh~~~~pv~~v~d 512 (632)
. ..+..+.+|||||||||||||||||||+||++||+| ++.+++|
T Consensus 730 -----------------------------~---~~~~~e~~GALWhIF~~~Dv~KireyL~k~~~E~~~----~~~~v~h 773 (889)
T KOG1356|consen 730 -----------------------------R---ISSVSETPGALWHIFRAQDVPKIREYLRKVCKEQGH----EVPKVHH 773 (889)
T ss_pred -----------------------------h---ccccccCCcchhhhhhhcchHHHHHHHHHhhHHhcC----CCCcccC
Confidence 0 001237899999999999999999999999999998 7899999
Q ss_pred CccccccccCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCcccccccchhhhhhhcccCccchHHHHHHHHHhhcCCC
Q 006745 513 PIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPP 592 (632)
Q Consensus 513 PIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp~ 592 (632)
|||||+||||++||+|||||||||||||+|+||||||||||||||||||+||||||+||||||||.||+|||+|||+||+
T Consensus 774 PIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp~ 853 (889)
T KOG1356|consen 774 PIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLPQ 853 (889)
T ss_pred CCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccchhhHhHHHHHHHHHHHHHhCCCCC
Q 006745 593 NHRAKEDKLEVKKMILYAVSQAVKDISDPGA 623 (632)
Q Consensus 593 ~H~akEDKLeVkkm~l~A~~~Av~~l~~~~~ 623 (632)
+|.+||||||||||+||||++||++|+...+
T Consensus 854 ~h~~~eDKLqvK~mi~hAVk~Av~~L~~~~s 884 (889)
T KOG1356|consen 854 NHKNHEDKLQVKNMIYHAVKDAVGTLKEAES 884 (889)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999997654
No 2
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.54 E-value=3.4e-15 Score=131.23 Aligned_cols=86 Identities=31% Similarity=0.464 Sum_probs=64.3
Q ss_pred CCcceeeeecCCChHHHHHHHHHHHHhhcccccCCCCcccCCccccccccCHHHHHHHHHHhCCcceEEEeecCCeEEec
Q 006745 472 DGGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVIHPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVP 551 (632)
Q Consensus 472 ~~GAlWDIFrreDv~KLreyL~kh~~Efrh~~~~pv~~v~dPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIP 551 (632)
.+..+|-+++++|.+|++++++++.. ..+|+| +..+.+.-.+.. ..+.||+.|+|+|++||+||||
T Consensus 29 g~~k~W~~v~~~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~p~~-l~~~gi~~~~~~Q~~Ge~V~i~ 94 (114)
T PF02373_consen 29 GGSKVWYIVPPEDADKFEKFLRSKES------------QNCPQF-LDHKNIFVSPEQ-LKKAGIPVYRFVQKPGEFVFIP 94 (114)
T ss_dssp ESEEEEEEE-GGGHHHHHHHHHHHHH------------HHSTTG-GCTGGEEEGHHH-HHHTTS--EEEEEETT-EEEE-
T ss_pred CcceEeEEechhhhhhHHHHHhhccc------------cccccc-ccccccccceee-eeccCcccccceECCCCEEEEC
Confidence 35789999999999999999998721 134444 444443333343 6779999999999999999999
Q ss_pred CCCcccccccchhhhhhhcc
Q 006745 552 AGCPHQVRNLKSCIKAALDF 571 (632)
Q Consensus 552 AGCPHQVRNLkSCIKVAlDF 571 (632)
+|++|||.|+-.||++|.+|
T Consensus 95 pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 95 PGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp TT-EEEEEESSSEEEEEEEE
T ss_pred CCceEEEEeCCceEEEEecC
Confidence 99999999999999999988
No 3
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=99.00 E-value=6.2e-11 Score=116.18 Aligned_cols=40 Identities=33% Similarity=0.598 Sum_probs=32.8
Q ss_pred cceEEEeecCCeEEecCCCccccccc--ch-hhhhhhcccCcc
Q 006745 536 EPWTFIQKLGEAVFVPAGCPHQVRNL--KS-CIKAALDFVSPE 575 (632)
Q Consensus 536 EpWtf~Q~lGEAVFIPAGCPHQVRNL--kS-CIKVAlDFVSPE 575 (632)
.+|++++.+||++|||+|-.|||+|| .. ||.|...|..+.
T Consensus 207 ~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~~ 249 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTPF 249 (251)
T ss_dssp -EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS-
T ss_pred ceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEecccc
Confidence 89999999999999999999999999 76 999998888764
No 4
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=96.98 E-value=0.00033 Score=55.82 Aligned_cols=54 Identities=43% Similarity=0.629 Sum_probs=42.6
Q ss_pred HhhhCCCCcCccCCCCCcccccccCCCCCCCCCCCCceeeccccccccCCCCCcccccccccchhhhhhccc
Q 006745 283 EFLGCLPFKEYTHPCAGALNIATKLPKKSLKPDMGPKTYIAYGVAQELGRADSVTKLHCDMSDAVNVLTHTT 354 (632)
Q Consensus 283 eFi~aLP~~EYT~pr~G~LNLAakLP~~~lkPDLGPK~YIAYG~~eElGrGDSvTkLH~DmSDAVNIL~hta 354 (632)
..+..||+ .+||+.+++.....|+. +|+.+|.. +|+|.+|+|..|.+|++.+.+
T Consensus 3 ~~l~~lP~---------~~~ll~~~~~~~~~~~~---~~~~~G~~------~s~t~~H~d~~~~~n~~~~~~ 56 (57)
T smart00558 3 NNLAKLPF---------KLNLLSDLPEDILGPDV---PYLYMGMA------GSVTPWHIDDYDLVNYLHQGA 56 (57)
T ss_pred chhhhCCC---------cchHHHHCCcccCCCCc---ceEEEeCC------CCccceeEcCCCeEEEEEecC
Confidence 34566776 78999999988887777 66666643 789999999999999887653
No 5
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=96.02 E-value=0.0049 Score=66.79 Aligned_cols=50 Identities=30% Similarity=0.416 Sum_probs=43.5
Q ss_pred hCCcceEEEeecCCeEEecCCCcccccccchhhhhhhcccCccchHHHHH
Q 006745 533 YGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVR 582 (632)
Q Consensus 533 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~r 582 (632)
+.+.+.++.|.+||+||+|.|==|||-||-.+|.|--.++--=|+..=.+
T Consensus 263 ~~~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~nl~~~w~ 312 (427)
T KOG2131|consen 263 FRGPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNATNLAWMWD 312 (427)
T ss_pred cccchhhhhccCCceeeccCccccccccccceeeecccccccccHHHHHH
Confidence 34677899999999999999999999999999999998888777765544
No 6
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=93.82 E-value=0.025 Score=45.56 Aligned_cols=26 Identities=42% Similarity=0.722 Sum_probs=22.5
Q ss_pred EEEeecCCeEEecCCCcccccccchh
Q 006745 539 TFIQKLGEAVFVPAGCPHQVRNLKSC 564 (632)
Q Consensus 539 tf~Q~lGEAVFIPAGCPHQVRNLkSC 564 (632)
++.=..||+++||||++|+++|..+.
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~n~~~~ 63 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVRNPGDE 63 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEEEESSS
T ss_pred EeEccCCEEEEECCCCeEEEEECCCC
Confidence 56667899999999999999998653
No 7
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=93.39 E-value=0.021 Score=52.40 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=43.5
Q ss_pred CcccCCccccccccCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCcccccccchh
Q 006745 508 QQVIHPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSC 564 (632)
Q Consensus 508 ~~v~dPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSC 564 (632)
....||-++|.+|..+-.-+ |.++.=+++=+.||.|+||||.+|-+.|..+.
T Consensus 57 ~~H~hp~~~~~~~Vl~G~~~-----~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~~~~ 108 (131)
T COG1917 57 PWHTHPLGEQTIYVLEGEGT-----VQLEGEKKELKAGDVIIIPPGVVHGLKAVEDE 108 (131)
T ss_pred ccccCCCcceEEEEEecEEE-----EEecCCceEecCCCEEEECCCCeeeeccCCCC
Confidence 45689989999999876543 55556677778999999999999999999998
No 8
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=92.48 E-value=0.059 Score=57.88 Aligned_cols=43 Identities=42% Similarity=0.619 Sum_probs=40.3
Q ss_pred cceEEEeecCCeEEecCCCcccccccchhhhhhhcccCccchH
Q 006745 536 EPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVS 578 (632)
Q Consensus 536 EpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 578 (632)
+|=...|++||.||||.|-=|=|-||.-.|.|+..|+|=||.+
T Consensus 261 kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 261 KPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred CCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 4667899999999999999999999999999999999999965
No 9
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=90.81 E-value=0.12 Score=47.90 Aligned_cols=42 Identities=31% Similarity=0.493 Sum_probs=30.7
Q ss_pred ceEEEeecCCeEEecCCCcccccccchhhhhhhcccCccchH
Q 006745 537 PWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVS 578 (632)
Q Consensus 537 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 578 (632)
.=.++=+.||+|+||||.||.++|.-++-=+.++=-+|+..+
T Consensus 74 ~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~~~~ 115 (127)
T COG0662 74 GEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPPYLG 115 (127)
T ss_pred CEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCCcCC
Confidence 567788899999999999999999988433333333454433
No 10
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=89.39 E-value=0.18 Score=52.40 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=24.6
Q ss_pred hCCcceEEEeecCCeEEecCCCcccccccc
Q 006745 533 YGIEPWTFIQKLGEAVFVPAGCPHQVRNLK 562 (632)
Q Consensus 533 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 562 (632)
|.+..=...=..||+|||||||||+..|.=
T Consensus 213 ~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G 242 (260)
T TIGR03214 213 YNLDNNWVPVEAGDYIWMGAYCPQACYAGG 242 (260)
T ss_pred EEECCEEEEecCCCEEEECCCCCEEEEecC
Confidence 455555667788999999999999999963
No 11
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=83.64 E-value=0.51 Score=46.04 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=41.1
Q ss_pred ccccccCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCcccccccchhhhhhhcccCcc
Q 006745 516 DQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPE 575 (632)
Q Consensus 516 DQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 575 (632)
++.+|+-.-.- ++-|..=++.-..||.++||||.||..+|..++--+++-+++|-
T Consensus 129 ~E~~~Vl~G~~-----~~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~p~ 183 (185)
T PRK09943 129 EEIGTVLEGEI-----VLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTPT 183 (185)
T ss_pred cEEEEEEEeEE-----EEEECCEEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeCCC
Confidence 45555544432 25567778889999999999999999999877766666677764
No 12
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=81.76 E-value=1.1 Score=42.59 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=22.5
Q ss_pred EEEeecCCeEEecCCCcccccccch
Q 006745 539 TFIQKLGEAVFVPAGCPHQVRNLKS 563 (632)
Q Consensus 539 tf~Q~lGEAVFIPAGCPHQVRNLkS 563 (632)
+.+-..||...||+|.|||--||.+
T Consensus 89 ha~~~pGDf~YiPpgVPHqp~N~S~ 113 (142)
T COG4101 89 HAEVGPGDFFYIPPGVPHQPANLST 113 (142)
T ss_pred eEEecCCCeEEcCCCCCCcccccCC
Confidence 5677899999999999999999974
No 13
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=81.21 E-value=0.77 Score=48.52 Aligned_cols=15 Identities=47% Similarity=0.992 Sum_probs=13.7
Q ss_pred ecCCeEEecCCCccc
Q 006745 543 KLGEAVFVPAGCPHQ 557 (632)
Q Consensus 543 ~lGEAVFIPAGCPHQ 557 (632)
+.||+||||||.||=
T Consensus 156 ~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 156 KPGDFFYVPSGTPHA 170 (302)
T ss_pred CCCCEEEeCCCCccc
Confidence 479999999999995
No 14
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=79.79 E-value=0.92 Score=50.11 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCcc--------eEEEeecCCeEEecCCCccc
Q 006745 525 HKAKLKQEYGIEP--------WTFIQKLGEAVFVPAGCPHQ 557 (632)
Q Consensus 525 hk~kLkEEyGVEp--------Wtf~Q~lGEAVFIPAGCPHQ 557 (632)
.-.+|.+.|.-.+ =.+.=++|||+|||||.||=
T Consensus 216 ~i~~l~~~~p~D~G~~~~llLN~v~l~pGeaifipAg~~HA 256 (389)
T PRK15131 216 TIRLISEFYPDDSGLFSPLLLNVVKLNPGEAMFLFAETPHA 256 (389)
T ss_pred HHHHHHHHCCCCchheehhheeEEEeCCCCEEEeCCCCCeE
Confidence 4455666654321 13445789999999999996
No 15
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=77.68 E-value=1.7 Score=42.14 Aligned_cols=22 Identities=32% Similarity=0.711 Sum_probs=19.3
Q ss_pred ecCCeEEecCCCcccccccchh
Q 006745 543 KLGEAVFVPAGCPHQVRNLKSC 564 (632)
Q Consensus 543 ~lGEAVFIPAGCPHQVRNLkSC 564 (632)
..||.|+||+|+.|++.|.-+.
T Consensus 107 ~~g~sv~Ip~g~~H~i~n~g~~ 128 (151)
T PF01050_consen 107 KEGDSVYIPRGAKHRIENPGKT 128 (151)
T ss_pred cCCCEEEECCCCEEEEECCCCc
Confidence 5799999999999999997643
No 16
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=77.05 E-value=1.8 Score=43.61 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=25.7
Q ss_pred cceEEEeecCCeEEecCCCcccccccchh
Q 006745 536 EPWTFIQKLGEAVFVPAGCPHQVRNLKSC 564 (632)
Q Consensus 536 EpWtf~Q~lGEAVFIPAGCPHQVRNLkSC 564 (632)
+++.+.-..||+|+||+|..|++.|.-+.
T Consensus 118 ~~~~~~v~pGd~v~IPpg~~H~~iN~G~e 146 (191)
T PRK04190 118 EARWIEMEPGTVVYVPPYWAHRSVNTGDE 146 (191)
T ss_pred cEEEEEECCCCEEEECCCCcEEeEECCCC
Confidence 37889999999999999999999997643
No 17
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=74.06 E-value=2.3 Score=39.93 Aligned_cols=37 Identities=11% Similarity=-0.009 Sum_probs=27.0
Q ss_pred ceEEEeecCCeEEecCCCcccccccchhhhhhhcccCcc
Q 006745 537 PWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPE 575 (632)
Q Consensus 537 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 575 (632)
.=++.=..||+++||||-||+.+|...|.=++ -++|.
T Consensus 74 g~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~--v~tP~ 110 (125)
T PRK13290 74 GEVHPIRPGTMYALDKHDRHYLRAGEDMRLVC--VFNPP 110 (125)
T ss_pred CEEEEeCCCeEEEECCCCcEEEEcCCCEEEEE--EECCC
Confidence 44566678999999999999999985544322 25553
No 18
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=73.36 E-value=1.8 Score=46.83 Aligned_cols=19 Identities=53% Similarity=0.828 Sum_probs=16.6
Q ss_pred EEeecCCeEEecCCCcccc
Q 006745 540 FIQKLGEAVFVPAGCPHQV 558 (632)
Q Consensus 540 f~Q~lGEAVFIPAGCPHQV 558 (632)
+.=++|||+|||||.||=.
T Consensus 160 v~lkpGe~~fl~Agt~HA~ 178 (312)
T COG1482 160 VKLKPGEAFFLPAGTPHAY 178 (312)
T ss_pred EecCCCCEEEecCCCceee
Confidence 5667999999999999964
No 19
>PLN02288 mannose-6-phosphate isomerase
Probab=71.70 E-value=2 Score=47.73 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=15.4
Q ss_pred EEeecCCeEEecCCCccc
Q 006745 540 FIQKLGEAVFVPAGCPHQ 557 (632)
Q Consensus 540 f~Q~lGEAVFIPAGCPHQ 557 (632)
+.=.+|||||||||.||=
T Consensus 253 v~L~PGeaifl~ag~~HA 270 (394)
T PLN02288 253 VKLNPGEALYLGANEPHA 270 (394)
T ss_pred EecCCCCEEEecCCCCce
Confidence 345689999999999995
No 20
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=68.79 E-value=4.3 Score=44.77 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=37.3
Q ss_pred cCCCCCcCCC--ChHHHHHHH-hcCCCEEEEeccccccCC-CCChh-HHHHHHHH
Q 006745 165 NPAAKDIRHG--DLKHFQWHW-AKGEPVIVSNVLENALGL-SWDPM-VMWRACRQ 214 (632)
Q Consensus 165 cP~~~d~~~~--~l~hFQ~hW-~kGePVIVr~Vl~~~s~l-sWeP~-~mwra~~e 214 (632)
-|++.+.-+. .-.+|-+-| .+..|||+|+.+..=.++ .|.+. ++..|++.
T Consensus 20 vp~~v~~lD~~Ptpl~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~p~Yl~~algd 74 (437)
T KOG2508|consen 20 VPVLVNLLDLTPTPLDFYRKFVSTNTPVIIRKALPHWPALKLWSQPDYLLSALGD 74 (437)
T ss_pred cccccccccCCCchHHHHHhhhcCCCcEEEecccccCchhhccCchHHHHHhccC
Confidence 3555544442 346788888 789999999999877777 89887 88777765
No 21
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=65.76 E-value=3.3 Score=46.99 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=24.6
Q ss_pred CCcceEEEeecCCeEEecCCCcccccccch
Q 006745 534 GIEPWTFIQKLGEAVFVPAGCPHQVRNLKS 563 (632)
Q Consensus 534 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 563 (632)
.|..=++.=..||.|+||+|+||+.+|.-.
T Consensus 420 ~idg~~~~L~~GDSi~ip~g~~H~~~N~g~ 449 (478)
T PRK15460 420 TIDGDIKLLGENESIYIPLGATHCLENPGK 449 (478)
T ss_pred EECCEEEEecCCCEEEECCCCcEEEEcCCC
Confidence 445556667899999999999999999854
No 22
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=60.66 E-value=5.4 Score=42.65 Aligned_cols=41 Identities=17% Similarity=0.360 Sum_probs=31.2
Q ss_pred eEEEeecCCeEEecCCCcccccccchhhhhhhcccCccchH
Q 006745 538 WTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVS 578 (632)
Q Consensus 538 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 578 (632)
..|+=.+||..+||.|++|++.....|+.+++-|..|-...
T Consensus 176 ~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~d 216 (319)
T PF08007_consen 176 EEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWAD 216 (319)
T ss_dssp EEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHH
T ss_pred EEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhh
Confidence 46778899999999999999999999999999999884433
No 23
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=59.89 E-value=6.3 Score=41.11 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=32.7
Q ss_pred CCccccccccCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCcccccccch
Q 006745 512 HPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKS 563 (632)
Q Consensus 512 dPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 563 (632)
|+-.++-+|+-.---. .-+..-+++=..||+++||||+||..+|...
T Consensus 77 ~~g~ee~iyVl~G~l~-----v~~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~ 123 (260)
T TIGR03214 77 GEGIETFLFVISGEVN-----VTAEGETHELREGGYAYLPPGSKWTLANAQA 123 (260)
T ss_pred CCceEEEEEEEeCEEE-----EEECCEEEEECCCCEEEECCCCCEEEEECCC
Confidence 3334555665443311 2245667788899999999999999999763
No 24
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=59.73 E-value=4.2 Score=38.07 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=24.0
Q ss_pred EEEee----cCCeEEecCCCccccccc--chhhhhhhcc
Q 006745 539 TFIQK----LGEAVFVPAGCPHQVRNL--KSCIKAALDF 571 (632)
Q Consensus 539 tf~Q~----lGEAVFIPAGCPHQVRNL--kSCIKVAlDF 571 (632)
.+.|. .||.++||+|.||=+.|. .+.+.++.=+
T Consensus 81 ~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~ 119 (144)
T PF00190_consen 81 DFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFD 119 (144)
T ss_dssp EEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEE
T ss_pred eeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEE
Confidence 45666 999999999999999999 5666655433
No 25
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=58.49 E-value=4.7 Score=45.36 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=24.7
Q ss_pred CcceEEEeecCCeEEecCCCcccccccch
Q 006745 535 IEPWTFIQKLGEAVFVPAGCPHQVRNLKS 563 (632)
Q Consensus 535 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 563 (632)
+..=++.=..||.|+||+|.||+.+|.-+
T Consensus 412 ~dg~~~~l~~GDsi~ip~~~~H~~~N~g~ 440 (468)
T TIGR01479 412 IGDETLLLTENESTYIPLGVIHRLENPGK 440 (468)
T ss_pred ECCEEEEecCCCEEEECCCCcEEEEcCCC
Confidence 44556777899999999999999999865
No 26
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=57.96 E-value=6.1 Score=38.91 Aligned_cols=41 Identities=29% Similarity=0.433 Sum_probs=24.4
Q ss_pred cccccCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCcccccccc
Q 006745 517 QVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLK 562 (632)
Q Consensus 517 Q~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 562 (632)
++.||...+ ++|.-+|=.|.=..+.-.-||.+|+|||.|-.
T Consensus 75 GTl~l~~~~-----~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 75 GTLYLASSH-----EKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp EEEEE--SS-----SSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred eEEEEeccc-----ccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 466777444 26999999999999999999999999999954
No 27
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=56.80 E-value=8.7 Score=36.07 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=33.9
Q ss_pred ccCCccccccccCHHH-HHHHHHHhCCcceEEEeecCCeEEecCCCcccccccc
Q 006745 510 VIHPIHDQVFYLSSEH-KAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLK 562 (632)
Q Consensus 510 v~dPIHDQ~fYLt~eh-k~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 562 (632)
..||-.++-+|+-.-. +-.+-++.|=+-+++.-..||+++||+|-+|+..|.-
T Consensus 46 h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~ 99 (146)
T smart00835 46 HYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSG 99 (146)
T ss_pred eeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCC
Confidence 3455445666654422 1111122222567888999999999999999999974
No 28
>PTZ00194 60S ribosomal protein L26; Provisional
Probab=56.62 E-value=5.7 Score=38.61 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=38.5
Q ss_pred cCCccccccccCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCc
Q 006745 511 IHPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCP 555 (632)
Q Consensus 511 ~dPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCP 555 (632)
.-|+|...-.+.+.+=+.|+++|||..|.| +-||-|.|=+|=.
T Consensus 18 ~Ap~h~r~k~msa~LSkeLr~k~~~Rs~~I--kkGD~V~Vi~Gk~ 60 (143)
T PTZ00194 18 TAPSHLRRKLMSAPLSKELRAKYNVRSMPV--RKDDEVMVVRGHH 60 (143)
T ss_pred cCcHHHHHHHhcCccCHHHHHHhCCcccee--ecCCEEEEecCCC
Confidence 558999999999999999999999999977 7799999988864
No 29
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=52.70 E-value=9.3 Score=41.99 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=47.5
Q ss_pred CcccCCccccccccCHHHHHHHHHHhCC-----cceEEEeecCCeEEecCCCcccccccchhhhhhhcccCccchHHHHH
Q 006745 508 QQVIHPIHDQVFYLSSEHKAKLKQEYGI-----EPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVR 582 (632)
Q Consensus 508 ~~v~dPIHDQ~fYLt~ehk~kLkEEyGV-----EpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~r 582 (632)
....||--+..+|+-.-.= +..| ...++.=..||++|||+|.+|.++|.-+--=+-+-+.+....+.- .
T Consensus 259 ~~H~H~~~~E~~yvl~G~~-----~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i-~ 332 (367)
T TIGR03404 259 ELHWHPNADEWQYFIQGQA-----RMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADV-S 332 (367)
T ss_pred CCeeCcCCCeEEEEEEEEE-----EEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCcee-E
Confidence 4567777677666544332 1233 356777889999999999999999997543333333333332221 2
Q ss_pred HHHHhhcCC
Q 006745 583 LTEEFRLLP 591 (632)
Q Consensus 583 LteEfR~Lp 591 (632)
|++=+..+|
T Consensus 333 l~~~l~~~p 341 (367)
T TIGR03404 333 LNQWLALTP 341 (367)
T ss_pred HHHHHhhCC
Confidence 555555555
No 30
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=50.40 E-value=5.7 Score=43.59 Aligned_cols=17 Identities=53% Similarity=0.909 Sum_probs=13.5
Q ss_pred EeecCCeEEecCCCccc
Q 006745 541 IQKLGEAVFVPAGCPHQ 557 (632)
Q Consensus 541 ~Q~lGEAVFIPAGCPHQ 557 (632)
.=.+|||+|+|||.||-
T Consensus 253 ~L~pGeaifl~a~~~HA 269 (373)
T PF01238_consen 253 ELQPGEAIFLPAGEPHA 269 (373)
T ss_dssp EE-TT-EEEEHTTHHEE
T ss_pred EecCCceEEecCCCccc
Confidence 44599999999999997
No 31
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=49.70 E-value=5.9 Score=35.11 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=28.9
Q ss_pred ccCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCcccccc
Q 006745 520 YLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRN 560 (632)
Q Consensus 520 YLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRN 560 (632)
||+++.+++|.+.+|.++ ||+||+=||-.+.|++
T Consensus 60 fl~e~~~~~l~~~~~a~~-------GD~ll~~Ag~~~~v~~ 93 (95)
T PF02938_consen 60 FLSEEELKALIERLGAKP-------GDLLLFVAGKKEIVNK 93 (95)
T ss_dssp CCHHHHHHHHHHHTT--T-------TEEEEEEEESHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCC-------CCEEEEECCCHHHHHh
Confidence 499999999999999975 9999999999888764
No 32
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=47.65 E-value=14 Score=41.52 Aligned_cols=47 Identities=34% Similarity=0.550 Sum_probs=40.7
Q ss_pred CchhhhhhhcCCCCCCCceecCC--CCCcCCCChHHH-HHHHhcCCCEEEE
Q 006745 145 TNSELIKAASREDSTDNYLYNPA--AKDIRHGDLKHF-QWHWAKGEPVIVS 192 (632)
Q Consensus 145 ~~~~~r~aA~Re~s~dn~lycP~--~~d~~~~~l~hF-Q~hW~kGePVIVr 192 (632)
--+++-+||+|. +-.|-||||. ..-+...+|.+| ++|..+|.-|+|.
T Consensus 157 a~e~lH~aAfRn-gLgnslY~p~~~vg~vss~eL~~Fa~k~fv~gn~~lvg 206 (429)
T KOG2583|consen 157 AIEQLHAAAFRN-GLGNSLYSPGYQVGSVSSSELKDFAAKHFVKGNAVLVG 206 (429)
T ss_pred HHHHHHHHHHhc-ccCCcccCCcccccCccHHHHHHHHHHHhhccceEEEe
Confidence 356788999999 8899999996 667778999999 6899999999885
No 33
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=44.93 E-value=16 Score=36.61 Aligned_cols=56 Identities=25% Similarity=0.492 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhcccccCCCCcccCCccccccccCHHHHHHHHHHhCCcceEEEe-ecCCeEEecCCCcccc
Q 006745 486 SKLQDYLKKHFREFRHIHCCPVQQVIHPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQ-KLGEAVFVPAGCPHQV 558 (632)
Q Consensus 486 ~KLreyL~kh~~Efrh~~~~pv~~v~dPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q-~lGEAVFIPAGCPHQV 558 (632)
+||..|...|..++. .+-=|-+++-|.|.+-+. +-|-=++ .-||-|+||||.=|--
T Consensus 80 eKvk~FfEEhlh~de---------eiR~il~GtgYfDVrd~d--------d~WIRi~vekGDlivlPaGiyHRF 136 (179)
T KOG2107|consen 80 EKVKSFFEEHLHEDE---------EIRYILEGTGYFDVRDKD--------DQWIRIFVEKGDLIVLPAGIYHRF 136 (179)
T ss_pred HHHHHHHHHhcCchh---------heEEEeecceEEeeccCC--------CCEEEEEEecCCEEEecCcceeee
Confidence 688888888876643 344567889999988766 6776555 4699999999999973
No 34
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=42.70 E-value=13 Score=35.30 Aligned_cols=42 Identities=26% Similarity=0.420 Sum_probs=36.3
Q ss_pred cCCccccccccCHHHHHHHHHHhCCcceEEEeecCCeEEecCCC
Q 006745 511 IHPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGC 554 (632)
Q Consensus 511 ~dPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGC 554 (632)
.-|.|...-.+...+=+.|+++|||.-|.+ +.||-|.|=||-
T Consensus 17 ~a~~~~r~k~msa~LSkeLr~~y~ir~~~I--kkGD~V~VisG~ 58 (120)
T PRK01191 17 NAPLHLRQKLMSAPLSKELREKYGIRSLPV--RKGDTVKVMRGD 58 (120)
T ss_pred cCCHHHHHHHhcCccCHHHHHHhCCccceE--eCCCEEEEeecC
Confidence 447788888888888899999999999976 589999999885
No 35
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=40.70 E-value=18 Score=38.11 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=27.7
Q ss_pred HhCCcceEEEeecCCeEEecCCCcccccccchh
Q 006745 532 EYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSC 564 (632)
Q Consensus 532 EyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSC 564 (632)
.|-|.+-++.-..||+||||+|.||+......|
T Consensus 58 ~~~i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~ 90 (302)
T PRK10371 58 EYLINNEKVQINQGHITLFWACTPHQLTDPGNC 90 (302)
T ss_pred EEEECCEEEEEcCCcEEEEecCCcccccccCCC
Confidence 366788899999999999999999997655544
No 36
>PRK11171 hypothetical protein; Provisional
Probab=40.54 E-value=20 Score=37.56 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=23.8
Q ss_pred CcceEEEeecCCeEEecCCCcccccccc
Q 006745 535 IEPWTFIQKLGEAVFVPAGCPHQVRNLK 562 (632)
Q Consensus 535 VEpWtf~Q~lGEAVFIPAGCPHQVRNLk 562 (632)
+..=++.=..||.|+||+|.||+.+|.-
T Consensus 98 ~~g~~~~L~~GDsi~~p~~~~H~~~N~g 125 (266)
T PRK11171 98 LEGKTHALSEGGYAYLPPGSDWTLRNAG 125 (266)
T ss_pred ECCEEEEECCCCEEEECCCCCEEEEECC
Confidence 3455777789999999999999999975
No 37
>PRK11171 hypothetical protein; Provisional
Probab=39.21 E-value=17 Score=38.04 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=27.3
Q ss_pred HhCCcceEEEeecCCeEEecCCCcccccccc
Q 006745 532 EYGIEPWTFIQKLGEAVFVPAGCPHQVRNLK 562 (632)
Q Consensus 532 EyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 562 (632)
++.+..-++.=..||++++|+++||+.+|.-
T Consensus 217 ~~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g 247 (266)
T PRK11171 217 VYRLNNDWVEVEAGDFIWMRAYCPQACYAGG 247 (266)
T ss_pred EEEECCEEEEeCCCCEEEECCCCCEEEECCC
Confidence 3677888888899999999999999999963
No 38
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=39.13 E-value=13 Score=41.00 Aligned_cols=70 Identities=21% Similarity=0.269 Sum_probs=35.0
Q ss_pred eeecCCChHHHHHHHHHHHHhhcccc-cCCCCcccCCccccccccCHHHHHHHHHHhCCcceEEEe-ecCCeEEecCCCc
Q 006745 478 DIFRRQDISKLQDYLKKHFREFRHIH-CCPVQQVIHPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQ-KLGEAVFVPAGCP 555 (632)
Q Consensus 478 DIFrreDv~KLreyL~kh~~Efrh~~-~~pv~~v~dPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q-~lGEAVFIPAGCP 555 (632)
|=||-+-.++|+..|||-+-.++..- ...|+.. - -++.=-|=-...-||.---|=-| -.-||||||||--
T Consensus 242 ~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~------K--NidllyKYivhr~yG~~fttpAlVVEkdaVfIPAGWD 313 (473)
T KOG3905|consen 242 HEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKET------K--NIDLLYKYIVHRSYGFPFTTPALVVEKDAVFIPAGWD 313 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHcCceeEEeecccc------c--chHHHHHHHHHHhcCcccCCcceEeecceeEeccCCC
Confidence 45777778888888877665433210 0011100 0 00111111122347764444333 3469999999964
No 39
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=37.69 E-value=15 Score=36.94 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=38.7
Q ss_pred cceEEEeecCCeEEecCCCcccccccchhhhhhhcccCccchHHH
Q 006745 536 EPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQC 580 (632)
Q Consensus 536 EpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec 580 (632)
+..++.=+.||..+||+|.||..+.-..||-+.+.=..|+..-.+
T Consensus 74 ~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~LviE~~r~~~~~d~ 118 (177)
T PRK13264 74 KRRDVPIREGEMFLLPPHVPHSPQREAGSIGLVIERKRPEGELDG 118 (177)
T ss_pred ceeeEEECCCCEEEeCCCCCcCCccCCCeEEEEEEeCCCCCCccc
Confidence 346888899999999999999998899999999888888866553
No 40
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=36.94 E-value=16 Score=36.21 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=40.3
Q ss_pred cceEEEeecCCeEEecCCCcccccccchhhhhhhcccCccchHHHH
Q 006745 536 EPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCV 581 (632)
Q Consensus 536 EpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~ 581 (632)
+..++.=..||..+||+|.||..+--..||=+.+.=..|++...++
T Consensus 68 ~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvIE~~r~~~~~d~~ 113 (159)
T TIGR03037 68 KREDVPIREGDIFLLPPHVPHSPQRPAGSIGLVIERKRPQGELDGF 113 (159)
T ss_pred cEEEEEECCCCEEEeCCCCCcccccCCCcEEEEEEeCCCCCCCcce
Confidence 3567888999999999999999888899999999999999877643
No 41
>PF08990 Docking: Erythronolide synthase docking; InterPro: IPR015083 The N-terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerise to form amphipathic parallel alpha-helical coiled coils: dimerisation is essential for protein function []. ; GO: 0016740 transferase activity, 0048037 cofactor binding; PDB: 2HG4_E.
Probab=36.34 E-value=26 Score=25.18 Aligned_cols=17 Identities=47% Similarity=0.718 Sum_probs=14.0
Q ss_pred ChHHHHHHHHHHHHhhc
Q 006745 484 DISKLQDYLKKHFREFR 500 (632)
Q Consensus 484 Dv~KLreyL~kh~~Efr 500 (632)
+-+||++||++...|.+
T Consensus 3 ~e~kLr~YLkr~t~eL~ 19 (27)
T PF08990_consen 3 NEDKLRDYLKRVTAELR 19 (27)
T ss_dssp -HCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45799999999998865
No 42
>PF12852 Cupin_6: Cupin
Probab=34.44 E-value=23 Score=34.24 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=28.0
Q ss_pred ccCCccccccccCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCcccccccc
Q 006745 510 VIHPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLK 562 (632)
Q Consensus 510 v~dPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 562 (632)
..|=+-..++||.-.- +-+ .+.=..||.||+|.|.+|...--.
T Consensus 37 ~fh~V~~G~~~l~~~~--------~~~--~~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 37 SFHVVLRGSCWLRVPG--------GGE--PIRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred EEEEEECCeEEEEEcC--------CCC--eEEecCCCEEEEcCCCCeEeCCCC
Confidence 3555566667766211 112 355567999999999999985443
No 43
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=34.18 E-value=21 Score=30.20 Aligned_cols=17 Identities=41% Similarity=0.684 Sum_probs=13.0
Q ss_pred EEEeecCCeEEecCCCc
Q 006745 539 TFIQKLGEAVFVPAGCP 555 (632)
Q Consensus 539 tf~Q~lGEAVFIPAGCP 555 (632)
+..=..||+||||+|..
T Consensus 45 ~~~~~aGD~~~~p~G~~ 61 (74)
T PF05899_consen 45 TVTFKAGDAFFLPKGWT 61 (74)
T ss_dssp EEEEETTEEEEE-TTEE
T ss_pred EEEEcCCcEEEECCCCE
Confidence 45557999999999984
No 44
>KOG4822 consensus Predicted nuclear membrane protein involved in mRNA transport and sex determination via splicing modulation [RNA processing and modification; Signal transduction mechanisms]
Probab=29.81 E-value=23 Score=44.31 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=37.7
Q ss_pred cccccCCCccCCC----CCcCCCCCCCCCC---------CCCCCCCCCCCCCCcccCCCCCccCCCCCCCCC
Q 006745 33 FKVDSTPETDSKF----DTTPGTDSKVGSN---------PEKDSKGREKPISDWKANENGSILCPSIELGGC 91 (632)
Q Consensus 33 ~~~~~~~~~~~g~----~y~~g~~~~~~~~---------~~~~~~~~~~~~~~W~a~~dGsI~Cpp~e~ggC 91 (632)
|.+--++|++.|- -|++|-+.-.... .....++.+.-+.+|+-.+||+|||.|.| |-|
T Consensus 275 ~~e~~~~~~~~~~~d~~~~~~~~d~~~~~~~t~~~~~~~~~~~rhs~~~~~~g~~~r~d~~~~~~~~e-~~~ 345 (1906)
T KOG4822|consen 275 CSEGCLQFVNSGGMDQLVYLFGHDGQNSTTITLLLLGVVEQATRHSVCEGFLGWWPREDGSIPSGKSE-GYC 345 (1906)
T ss_pred hcccccccCCCcccCCcccccCCCCCCchHHHHHHHHHHHHHhhhhhhhhhccCCccccCCCCCCccc-hhh
Confidence 3355578888763 3666665433110 01113566777999999999999999998 433
No 45
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=29.17 E-value=30 Score=36.25 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=36.7
Q ss_pred ccCCccccccccCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCcccccc
Q 006745 510 VIHPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRN 560 (632)
Q Consensus 510 v~dPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRN 560 (632)
..+-=|||.+|+-+-.-. +-|.+=++.=..||.+|||.|++|.-.+
T Consensus 170 ~wtl~~dEi~YVLEGe~~-----l~IdG~t~~l~pGDvlfIPkGs~~hf~t 215 (233)
T PRK15457 170 PWTLNYDEIDMVLEGELH-----VRHEGETMIAKAGDVMFIPKGSSIEFGT 215 (233)
T ss_pred ceeccceEEEEEEEeEEE-----EEECCEEEEeCCCcEEEECCCCeEEecC
Confidence 355668898888665533 6788999999999999999999977543
No 46
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=28.68 E-value=40 Score=37.18 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=23.4
Q ss_pred cceEEEeecCCeEEecCCCcccccccch
Q 006745 536 EPWTFIQKLGEAVFVPAGCPHQVRNLKS 563 (632)
Q Consensus 536 EpWtf~Q~lGEAVFIPAGCPHQVRNLkS 563 (632)
+-+++.=..||.++||+|.+|-.+|...
T Consensus 108 ~~~~~~L~~GD~~~fP~g~~H~~~n~~~ 135 (367)
T TIGR03404 108 RNYIDDVGAGDLWYFPPGIPHSLQGLDE 135 (367)
T ss_pred cEEEeEECCCCEEEECCCCeEEEEECCC
Confidence 3455567899999999999999999854
No 47
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=28.62 E-value=26 Score=35.94 Aligned_cols=47 Identities=23% Similarity=0.218 Sum_probs=39.4
Q ss_pred hhhhhcccCccchHHHHHHHHHhhcCCCccCCccchhhHhHHHHHHH-HHHHHHhCCC
Q 006745 565 IKAALDFVSPENVSQCVRLTEEFRLLPPNHRAKEDKLEVKKMILYAV-SQAVKDISDP 621 (632)
Q Consensus 565 IKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~akEDKLeVkkm~l~A~-~~Av~~l~~~ 621 (632)
+.||+|+.+.+ ++++|++++... .|-++|..-++++. .++|++|++.
T Consensus 6 livALD~~~~~---~A~~l~~~l~~~-------v~~iKVG~~L~~~~G~~~i~~lk~~ 53 (218)
T PRK13305 6 LQLALDHTSLE---AAQRDVTLLKDH-------VDIVEAGTILCLNEGLGAVKALREQ 53 (218)
T ss_pred EEEEeCCCCHH---HHHHHHHHcccc-------CCEEEECHHHHHHhCHHHHHHHHHh
Confidence 56999999987 899999887632 57899999999998 7888888764
No 48
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=28.55 E-value=33 Score=32.21 Aligned_cols=43 Identities=21% Similarity=0.345 Sum_probs=38.3
Q ss_pred cCCccccccccCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCc
Q 006745 511 IHPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCP 555 (632)
Q Consensus 511 ~dPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCP 555 (632)
.-|+|...-++...+=+.|+++||++-+.| +-||-|-|=+|-=
T Consensus 13 ~a~~~~r~~~~~a~ls~elr~~y~~r~~~I--kkGD~V~Vi~Gk~ 55 (114)
T TIGR01080 13 TAPLHVRRKLMSAPLSKELREKYGKRALPV--RKGDKVRIMRGDF 55 (114)
T ss_pred cCcHhhhhheeecccCHHHHHHcCccccee--ecCCEEEEecCCC
Confidence 458999999999999999999999999966 7899999998853
No 49
>PRK13501 transcriptional activator RhaR; Provisional
Probab=27.77 E-value=33 Score=35.41 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=24.0
Q ss_pred hCCcceEEEeecCCeEEecCCCcccccc
Q 006745 533 YGIEPWTFIQKLGEAVFVPAGCPHQVRN 560 (632)
Q Consensus 533 yGVEpWtf~Q~lGEAVFIPAGCPHQVRN 560 (632)
+-|+.-++.=..||.||||+|.+|+++.
T Consensus 51 ~~i~~~~~~l~~g~~~~I~p~~~H~~~~ 78 (290)
T PRK13501 51 HVLNDHPYRITCGDVFYIQAADHHSYES 78 (290)
T ss_pred EEECCeeeeecCCeEEEEcCCCcccccc
Confidence 5577778888899999999999999764
No 50
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=27.49 E-value=39 Score=34.39 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=24.5
Q ss_pred hCCcceEEEeecCCeEEecCCCcccccccc
Q 006745 533 YGIEPWTFIQKLGEAVFVPAGCPHQVRNLK 562 (632)
Q Consensus 533 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 562 (632)
+.|..=++.=..||+||||+|.+|+++.-.
T Consensus 57 ~~~~~~~~~l~~g~~~ii~~~~~H~~~~~~ 86 (287)
T TIGR02297 57 LQLDEHEYSEYAPCFFLTPPSVPHGFVTDL 86 (287)
T ss_pred EEECCEEEEecCCeEEEeCCCCccccccCC
Confidence 666666777789999999999999986543
No 51
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=26.22 E-value=49 Score=32.58 Aligned_cols=20 Identities=35% Similarity=0.693 Sum_probs=15.7
Q ss_pred CcceEEEeecCCeEEecCCC
Q 006745 535 IEPWTFIQKLGEAVFVPAGC 554 (632)
Q Consensus 535 VEpWtf~Q~lGEAVFIPAGC 554 (632)
+++-++.=+.||+||||.|.
T Consensus 110 ~~G~~~~A~~GDvi~iPkGs 129 (152)
T PF06249_consen 110 IDGQTVTAKPGDVIFIPKGS 129 (152)
T ss_dssp ETTEEEEEETT-EEEE-TT-
T ss_pred ECCEEEEEcCCcEEEECCCC
Confidence 56889999999999999996
No 52
>PRK13503 transcriptional activator RhaS; Provisional
Probab=26.08 E-value=36 Score=34.43 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=23.3
Q ss_pred hCCcceEEEeecCCeEEecCCCcccccccch
Q 006745 533 YGIEPWTFIQKLGEAVFVPAGCPHQVRNLKS 563 (632)
Q Consensus 533 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 563 (632)
+.|..=++.=..||++|||+|.+|..++...
T Consensus 48 ~~i~~~~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 48 HVFNGQPYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred eEecCCcccccCCcEEEECCCccchhhhccC
Confidence 3444445566789999999999998776654
No 53
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=24.36 E-value=47 Score=28.81 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=27.1
Q ss_pred hCCcceEEEeecCCeEEecCCCcccccccc--hhhhhhhcccCccchHH
Q 006745 533 YGIEPWTFIQKLGEAVFVPAGCPHQVRNLK--SCIKAALDFVSPENVSQ 579 (632)
Q Consensus 533 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk--SCIKVAlDFVSPEnV~e 579 (632)
+.|..=++.=..||++|||.|.+|...--. .+....+.| +|+-+.+
T Consensus 36 ~~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~-~~~~~~~ 83 (136)
T PF02311_consen 36 LHIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF-SPDFLEE 83 (136)
T ss_dssp EEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE----GGGG
T ss_pred EEECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE-CHHHHHH
Confidence 345566677889999999999999987776 566555555 4544433
No 54
>PF14816 FAM178: Family of unknown function, FAM178
Probab=23.13 E-value=48 Score=37.02 Aligned_cols=29 Identities=21% Similarity=0.439 Sum_probs=24.2
Q ss_pred ccCHHHHHHHHHHhCCcceEEE-eecCCeEE
Q 006745 520 YLSSEHKAKLKQEYGIEPWTFI-QKLGEAVF 549 (632)
Q Consensus 520 YLt~ehk~kLkEEyGVEpWtf~-Q~lGEAVF 549 (632)
=|+.|||. +.|.|+|..-.|- +|+||.||
T Consensus 62 ~l~~Ehr~-~lekfsv~~~~Ip~~HPGE~IF 91 (377)
T PF14816_consen 62 DLTPEHRE-FLEKFSVSLQAIPDVHPGEEIF 91 (377)
T ss_pred cCCHHHHH-HHHHhchhhccCCCCCCchhhc
Confidence 35789977 7779999988885 78899999
No 55
>PRK13502 transcriptional activator RhaR; Provisional
Probab=22.71 E-value=63 Score=32.99 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=23.4
Q ss_pred hCCcceEEEeecCCeEEecCCCcccccc
Q 006745 533 YGIEPWTFIQKLGEAVFVPAGCPHQVRN 560 (632)
Q Consensus 533 yGVEpWtf~Q~lGEAVFIPAGCPHQVRN 560 (632)
+-|+.=++.-..||++|||+|.+|....
T Consensus 51 ~~i~~~~~~l~~g~l~li~~~~~H~~~~ 78 (282)
T PRK13502 51 HVLNERPYRITRGDLFYIRAEDKHSYTS 78 (282)
T ss_pred EEECCEEEeecCCcEEEECCCCcccccc
Confidence 4566777888999999999999998754
No 56
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=22.04 E-value=1.1e+02 Score=36.27 Aligned_cols=91 Identities=20% Similarity=0.243 Sum_probs=64.0
Q ss_pred CCCCChhhHHHhcchhhHHhhhCCCCcCccCCCCCcccccccCCCCCCCCCCCCceeeccccccccC---CCCCcccccc
Q 006745 265 KDWPPSNLFEERLPRHNVEFLGCLPFKEYTHPCAGALNIATKLPKKSLKPDMGPKTYIAYGVAQELG---RADSVTKLHC 341 (632)
Q Consensus 265 KDWPps~~F~e~LP~h~~eFi~aLP~~EYT~pr~G~LNLAakLP~~~lkPDLGPK~YIAYG~~eElG---rGDSvTkLH~ 341 (632)
-.|--...++.+-|-+.+.=|+++|+|-|++| .++-|---|++.|-|+.-.-| +|+||.---+
T Consensus 535 ~GWSLP~kykq~t~gq~e~~mknvPvPVycRP--------------L~~kdpsmKlWCA~GVnLsGgr~~~g~~vvG~~v 600 (832)
T KOG2077|consen 535 FGWSLPQKYKQVTNGQGENKMKNVPVPVYCRP--------------LDKKDPSMKLWCAVGVNLSGGRTRDGGSVVGASV 600 (832)
T ss_pred eccccchhhhccCCCccccccccCCcceeecc--------------cccCCcceeeeeecceeccCCccCCCCccccCcc
Confidence 34555667888888999999999999999997 456677889999999986655 3667666555
Q ss_pred cccchhhhhhccccccCChhHHHHHHHHHH
Q 006745 342 DMSDAVNVLTHTTDVKLKPEHLAKIEKLKQ 371 (632)
Q Consensus 342 DmSDAVNIL~htaev~~~~~~~~~i~kLk~ 371 (632)
=-.++.-.+|-+++-. ++-.+.|.++.+
T Consensus 601 ~~ap~~~~~T~~s~~r--~e~~s~~~~~~~ 628 (832)
T KOG2077|consen 601 FYAPVAGLDTEGSKQR--SESQSSLDKLDQ 628 (832)
T ss_pred cccCccCcccccccCC--CcchhhhhhHHH
Confidence 5666666666655432 222344555544
No 57
>COG0184 RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]
Probab=20.60 E-value=69 Score=28.96 Aligned_cols=57 Identities=28% Similarity=0.300 Sum_probs=43.3
Q ss_pred ccCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCcccccccchhhhhhhcccCccchHHHHHHHHHhhcCCCccCCccc
Q 006745 520 YLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPPNHRAKED 599 (632)
Q Consensus 520 YLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~akED 599 (632)
+++.+-+..|..|||+- .+|.+.. |.||-||- .+-..||+=|..=|++|.++-.
T Consensus 2 ~~~~~~k~~l~~eyg~~-------~~dtgs~----evq~a~Lt---------------~ri~~L~~Hlk~hkKD~~srRG 55 (89)
T COG0184 2 SLTSEIKQELRDEYGIP-------EVDTGSG----EVQLALLT---------------ERINNLTEHLKEHKKDHHSRRG 55 (89)
T ss_pred CchHHHHHHHHHHhCCC-------CCCCCCc----HHHHHHHH---------------HHHHHHHHHHHHCCcchhHHHH
Confidence 68899999999999974 4554443 77877775 3456889999999999988765
Q ss_pred hhh
Q 006745 600 KLE 602 (632)
Q Consensus 600 KLe 602 (632)
-+-
T Consensus 56 L~~ 58 (89)
T COG0184 56 LLL 58 (89)
T ss_pred HHH
Confidence 543
No 58
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=20.43 E-value=65 Score=32.85 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.6
Q ss_pred hCCcceEEEeecCCeEEecCCCcccc
Q 006745 533 YGIEPWTFIQKLGEAVFVPAGCPHQV 558 (632)
Q Consensus 533 yGVEpWtf~Q~lGEAVFIPAGCPHQV 558 (632)
+-|..=++.=..||.+|||+|..|+.
T Consensus 56 ~~i~~~~~~l~~g~l~~i~p~~~H~~ 81 (278)
T PRK10296 56 QEINGKRVLLERGDFVFIPLGSHHQS 81 (278)
T ss_pred EEECCEEEEECCCcEEEeCCCCccce
Confidence 55677778889999999999999986
No 59
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=20.25 E-value=44 Score=33.97 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=38.7
Q ss_pred hhhhhcccCccchHHHHHHHHHhhcCCCccCCccchhhHhHHHHHHH-HHHHHHhCCC
Q 006745 565 IKAALDFVSPENVSQCVRLTEEFRLLPPNHRAKEDKLEVKKMILYAV-SQAVKDISDP 621 (632)
Q Consensus 565 IKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~akEDKLeVkkm~l~A~-~~Av~~l~~~ 621 (632)
+.||+|+.+.| +.++|++++... .|-++|..-++++. -..|++|++.
T Consensus 6 l~vALD~~~~~---~a~~l~~~l~~~-------v~~~kvG~~l~~~~G~~~i~~lk~~ 53 (216)
T PRK13306 6 LQIALDNQDLE---SAIEDAKKVAEE-------VDIIEVGTILLLAEGMKAVRVLRAL 53 (216)
T ss_pred EEEEecCCCHH---HHHHHHHHcccc-------CCEEEEChHHHHHhCHHHHHHHHHH
Confidence 57999999988 888899887643 47799999999998 6778888764
No 60
>PRK10314 putative acyltransferase; Provisional
Probab=20.12 E-value=78 Score=30.02 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=25.6
Q ss_pred ccccCHHH-HHHHHHHhCCcceEEEeecCCeEEecCCCccccc
Q 006745 518 VFYLSSEH-KAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVR 559 (632)
Q Consensus 518 ~fYLt~eh-k~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVR 559 (632)
.++|+... ...+++.+|-+ ..|| +|+.+|+||+.-
T Consensus 111 ~i~L~a~~~a~~fY~k~GF~------~~g~-~f~~~Gi~h~~M 146 (153)
T PRK10314 111 PVYLGAQAHLQNFYQSFGFI------PVTE-VYEEDGIPHIGM 146 (153)
T ss_pred cEEEehHHHHHHHHHHCCCE------ECCC-ccccCCCCcHhh
Confidence 46666543 35799999865 3677 799999999853
Done!