Query 006749
Match_columns 632
No_of_seqs 343 out of 3041
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 13:56:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 1.9E-34 4.1E-39 266.5 14.2 400 50-625 72-476 (483)
2 KOG4341 F-box protein containi 99.9 1.2E-26 2.6E-31 215.0 11.1 322 149-557 138-461 (483)
3 KOG2120 SCF ubiquitin ligase, 99.9 3.7E-25 8.1E-30 195.9 13.1 289 49-389 97-388 (419)
4 PLN00113 leucine-rich repeat r 99.8 5.4E-20 1.2E-24 209.3 19.4 107 496-611 476-582 (968)
5 PLN00113 leucine-rich repeat r 99.8 1.1E-19 2.5E-24 206.6 20.7 423 148-615 92-537 (968)
6 KOG4194 Membrane glycoprotein 99.8 9E-21 1.9E-25 183.2 1.2 379 179-627 79-466 (873)
7 KOG4194 Membrane glycoprotein 99.7 6.7E-18 1.5E-22 163.6 1.6 377 149-598 78-463 (873)
8 KOG1947 Leucine rich repeat pr 99.6 1.3E-14 2.9E-19 152.8 17.2 290 199-569 156-449 (482)
9 cd00116 LRR_RI Leucine-rich re 99.6 5.7E-14 1.2E-18 139.1 20.6 175 442-623 108-300 (319)
10 KOG2120 SCF ubiquitin ligase, 99.6 5.8E-15 1.3E-19 131.7 11.1 206 284-552 186-391 (419)
11 cd00116 LRR_RI Leucine-rich re 99.6 1.7E-13 3.7E-18 135.7 22.0 163 442-609 137-316 (319)
12 PLN03210 Resistant to P. syrin 99.6 1.3E-14 2.9E-19 165.3 12.6 291 285-615 613-908 (1153)
13 KOG1947 Leucine rich repeat pr 99.5 2.2E-13 4.7E-18 143.6 14.5 179 441-624 268-451 (482)
14 PLN03210 Resistant to P. syrin 99.5 5.2E-13 1.1E-17 152.4 14.8 340 175-558 555-903 (1153)
15 KOG0444 Cytoskeletal regulator 99.4 6E-15 1.3E-19 144.5 -4.2 368 149-614 7-376 (1255)
16 KOG0618 Serine/threonine phosp 99.4 2E-13 4.4E-18 140.2 2.6 245 336-611 219-487 (1081)
17 KOG1909 Ran GTPase-activating 99.3 3.1E-11 6.7E-16 111.0 12.3 205 359-585 89-309 (382)
18 KOG0444 Cytoskeletal regulator 99.2 7.3E-13 1.6E-17 130.2 -4.7 173 439-629 194-368 (1255)
19 KOG0618 Serine/threonine phosp 99.2 8.9E-12 1.9E-16 128.4 1.8 130 441-587 358-489 (1081)
20 KOG3207 Beta-tubulin folding c 99.1 3.4E-11 7.3E-16 113.9 4.6 181 128-318 100-281 (505)
21 KOG1909 Ran GTPase-activating 99.1 1E-09 2.2E-14 101.2 11.1 206 415-627 92-326 (382)
22 PF12937 F-box-like: F-box-lik 99.0 1.9E-10 4E-15 76.2 2.2 36 50-86 1-36 (47)
23 KOG3207 Beta-tubulin folding c 99.0 2.7E-10 5.8E-15 107.9 3.1 212 333-583 118-335 (505)
24 KOG0472 Leucine-rich repeat pr 98.8 6.5E-10 1.4E-14 104.1 -0.6 83 521-611 434-539 (565)
25 KOG4237 Extracellular matrix p 98.8 8.5E-10 1.8E-14 103.1 -1.2 100 520-625 272-371 (498)
26 PRK15387 E3 ubiquitin-protein 98.7 1.3E-08 2.9E-13 108.2 6.1 204 336-595 262-465 (788)
27 KOG3665 ZYG-1-like serine/thre 98.6 1.5E-07 3.1E-12 100.0 9.2 157 443-608 123-283 (699)
28 PF00646 F-box: F-box domain; 98.6 9.8E-09 2.1E-13 68.5 0.3 39 49-88 2-40 (48)
29 PRK15370 E3 ubiquitin-protein 98.6 3E-07 6.5E-12 98.7 10.4 234 308-594 199-434 (754)
30 PRK15387 E3 ubiquitin-protein 98.5 1.7E-07 3.7E-12 100.0 6.7 185 336-569 282-466 (788)
31 smart00256 FBOX A Receptor for 98.5 1.3E-07 2.7E-12 60.8 3.4 34 53-87 1-34 (41)
32 KOG3665 ZYG-1-like serine/thre 98.5 5.2E-07 1.1E-11 95.9 9.4 115 145-268 118-232 (699)
33 PF14580 LRR_9: Leucine-rich r 98.3 4.1E-07 8.9E-12 78.8 4.1 105 496-610 43-150 (175)
34 KOG3864 Uncharacterized conser 98.3 7.9E-07 1.7E-11 76.1 4.8 104 524-631 103-209 (221)
35 KOG0472 Leucine-rich repeat pr 98.3 2.5E-08 5.4E-13 93.7 -5.0 58 523-585 482-539 (565)
36 PRK15370 E3 ubiquitin-protein 98.3 3.4E-06 7.4E-11 90.7 9.7 130 415-568 304-435 (754)
37 KOG4237 Extracellular matrix p 98.2 1.2E-06 2.7E-11 82.5 4.5 97 496-599 275-371 (498)
38 PF14580 LRR_9: Leucine-rich r 98.2 1.1E-06 2.3E-11 76.2 3.1 131 440-584 17-150 (175)
39 KOG2982 Uncharacterized conser 98.1 5E-06 1.1E-10 75.5 6.3 192 381-585 64-260 (418)
40 COG5238 RNA1 Ran GTPase-activa 98.1 7.4E-05 1.6E-09 67.2 12.3 93 521-615 213-317 (388)
41 COG5238 RNA1 Ran GTPase-activa 98.1 2.6E-05 5.6E-10 70.0 9.3 165 440-609 90-281 (388)
42 KOG3864 Uncharacterized conser 97.8 1.3E-05 2.7E-10 68.9 2.9 73 549-623 102-174 (221)
43 KOG1259 Nischarin, modulator o 97.8 6.7E-06 1.5E-10 74.7 0.5 127 440-585 282-410 (490)
44 KOG1259 Nischarin, modulator o 97.8 4.9E-06 1.1E-10 75.5 -0.4 128 415-561 284-412 (490)
45 KOG4658 Apoptotic ATPase [Sign 97.7 0.0001 2.2E-09 81.0 8.7 111 147-267 543-653 (889)
46 KOG4658 Apoptotic ATPase [Sign 97.6 5.8E-05 1.3E-09 82.9 5.2 64 202-267 543-606 (889)
47 KOG2982 Uncharacterized conser 97.6 0.00018 3.8E-09 65.7 7.2 183 285-479 73-260 (418)
48 PF13855 LRR_8: Leucine rich r 97.4 3.3E-05 7.1E-10 54.5 -0.4 58 523-584 2-59 (61)
49 PF13855 LRR_8: Leucine rich r 97.2 0.0001 2.2E-09 51.9 0.3 60 548-611 1-60 (61)
50 PRK15386 type III secretion pr 97.1 0.0012 2.6E-08 64.9 7.3 120 360-508 50-169 (426)
51 PRK15386 type III secretion pr 97.0 0.0011 2.4E-08 65.1 6.1 139 385-558 49-187 (426)
52 KOG0617 Ras suppressor protein 97.0 1.3E-05 2.9E-10 66.6 -6.2 148 415-585 33-184 (264)
53 PLN03150 hypothetical protein; 96.9 0.0015 3.2E-08 70.2 6.5 62 496-562 443-504 (623)
54 KOG1859 Leucine-rich repeat pr 96.8 0.00012 2.6E-09 75.0 -2.5 104 335-453 186-290 (1096)
55 smart00367 LRR_CC Leucine-rich 96.8 0.0012 2.7E-08 36.8 2.4 25 599-623 1-25 (26)
56 PLN03215 ascorbic acid mannose 96.8 0.001 2.2E-08 64.6 3.2 40 48-87 2-41 (373)
57 KOG2123 Uncharacterized conser 96.7 0.00069 1.5E-08 61.4 1.4 121 496-630 20-146 (388)
58 KOG1859 Leucine-rich repeat pr 96.7 0.0011 2.4E-08 68.3 2.7 136 168-318 74-219 (1096)
59 KOG2997 F-box protein FBX9 [Ge 96.3 0.0026 5.6E-08 58.7 2.6 42 44-86 101-147 (366)
60 PF12799 LRR_4: Leucine Rich r 96.3 0.0077 1.7E-07 38.7 4.0 33 549-584 2-34 (44)
61 KOG2739 Leucine-rich acidic nu 96.3 0.0018 4E-08 58.5 1.5 89 520-610 63-153 (260)
62 KOG4308 LRR-containing protein 96.2 0.0036 7.9E-08 64.1 3.1 198 415-619 115-337 (478)
63 PF12799 LRR_4: Leucine Rich r 96.1 0.0071 1.5E-07 38.8 3.3 38 522-562 1-38 (44)
64 KOG0617 Ras suppressor protein 96.1 0.00019 4.1E-09 59.9 -5.4 113 438-562 75-187 (264)
65 smart00367 LRR_CC Leucine-rich 95.9 0.0072 1.6E-07 33.7 2.2 24 573-596 1-24 (26)
66 KOG4308 LRR-containing protein 95.8 0.0038 8.3E-08 63.9 1.3 204 417-627 89-316 (478)
67 KOG0281 Beta-TrCP (transducin 95.6 0.0067 1.4E-07 56.4 2.1 39 46-85 71-113 (499)
68 KOG2739 Leucine-rich acidic nu 95.6 0.0043 9.3E-08 56.1 0.8 90 333-424 62-152 (260)
69 PLN03150 hypothetical protein; 95.5 0.026 5.6E-07 60.8 6.5 59 496-558 467-525 (623)
70 KOG1644 U2-associated snRNP A' 95.4 0.011 2.3E-07 51.4 2.6 39 415-453 113-151 (233)
71 KOG2123 Uncharacterized conser 95.2 0.008 1.7E-07 54.7 1.3 102 149-262 19-123 (388)
72 KOG1644 U2-associated snRNP A' 95.0 0.0078 1.7E-07 52.2 0.6 83 496-583 65-149 (233)
73 KOG4579 Leucine-rich repeat (L 95.0 0.014 3.1E-07 47.2 1.9 60 496-561 54-113 (177)
74 PF13013 F-box-like_2: F-box-l 95.0 0.034 7.5E-07 43.6 3.9 34 49-83 21-56 (109)
75 PF13516 LRR_6: Leucine Rich r 94.8 0.02 4.3E-07 31.1 1.5 23 547-569 1-23 (24)
76 COG4886 Leucine-rich repeat (L 92.8 0.13 2.8E-06 52.5 4.6 33 547-583 254-286 (394)
77 PF13516 LRR_6: Leucine Rich r 91.9 0.083 1.8E-06 28.6 1.0 22 600-622 2-23 (24)
78 KOG4579 Leucine-rich repeat (L 91.9 0.04 8.6E-07 44.7 -0.4 83 496-585 28-111 (177)
79 KOG0274 Cdc4 and related F-box 91.4 0.078 1.7E-06 55.4 1.0 46 43-89 101-146 (537)
80 COG4886 Leucine-rich repeat (L 91.2 0.24 5.1E-06 50.6 4.2 148 443-614 141-290 (394)
81 smart00368 LRR_RI Leucine rich 89.8 0.39 8.5E-06 27.2 2.5 22 548-569 2-23 (28)
82 smart00368 LRR_RI Leucine rich 88.4 0.48 1E-05 26.8 2.2 25 600-625 2-26 (28)
83 KOG0531 Protein phosphatase 1, 87.7 0.12 2.7E-06 52.8 -0.9 35 576-614 234-268 (414)
84 PF13504 LRR_7: Leucine rich r 86.1 0.56 1.2E-05 22.9 1.4 12 549-560 2-13 (17)
85 KOG0531 Protein phosphatase 1, 81.8 0.81 1.8E-05 46.9 1.9 104 467-585 94-197 (414)
86 PF09372 PRANC: PRANC domain; 80.9 1.1 2.4E-05 34.8 1.9 27 47-74 69-95 (97)
87 KOG3763 mRNA export factor TAP 74.7 4.9 0.00011 41.2 4.8 91 514-606 211-307 (585)
88 KOG3763 mRNA export factor TAP 72.4 5.6 0.00012 40.8 4.6 81 496-581 219-308 (585)
89 KOG3926 F-box proteins [Amino 71.3 4.1 8.9E-05 37.3 3.1 42 43-84 195-236 (332)
90 PF00560 LRR_1: Leucine Rich R 68.1 2.6 5.6E-05 22.1 0.7 12 550-561 2-13 (22)
91 KOG0532 Leucine-rich repeat (L 67.1 1.6 3.4E-05 44.8 -0.4 33 550-585 213-245 (722)
92 smart00370 LRR Leucine-rich re 59.7 8 0.00017 21.1 1.8 14 548-561 2-15 (26)
93 smart00369 LRR_TYP Leucine-ric 59.7 8 0.00017 21.1 1.8 14 548-561 2-15 (26)
94 smart00365 LRR_SD22 Leucine-ri 52.4 13 0.00027 20.7 1.7 14 548-561 2-15 (26)
95 KOG2502 Tub family proteins [G 47.8 22 0.00048 34.3 3.6 39 48-86 43-88 (355)
96 KOG0532 Leucine-rich repeat (L 47.7 4.1 8.9E-05 41.9 -1.2 105 496-615 144-248 (722)
97 PF07723 LRR_2: Leucine Rich R 46.1 16 0.00034 20.2 1.5 8 444-451 2-9 (26)
98 KOG4242 Predicted myosin-I-bin 37.9 66 0.0014 32.8 5.2 110 308-424 165-277 (553)
99 PHA03100 ankyrin repeat protei 36.1 24 0.00051 37.0 2.3 30 47-77 445-474 (480)
100 PHA02875 ankyrin repeat protei 35.0 24 0.00052 36.1 2.0 28 46-74 383-410 (413)
101 PHA02989 ankyrin repeat protei 31.1 28 0.00061 36.7 1.8 30 46-76 455-484 (494)
102 PHA02878 ankyrin repeat protei 28.8 33 0.00072 35.9 1.9 28 46-74 443-470 (477)
103 KOG3473 RNA polymerase II tran 27.6 28 0.00061 26.4 0.7 55 9-66 24-78 (112)
104 PF13306 LRR_5: Leucine rich r 26.6 20 0.00044 29.2 -0.2 11 547-557 80-90 (129)
105 smart00364 LRR_BAC Leucine-ric 23.9 49 0.0011 18.4 1.0 13 549-561 3-15 (26)
106 PHA02798 ankyrin-like protein; 22.0 53 0.0011 34.6 1.8 26 46-72 460-485 (489)
107 PF12586 DUF3760: Protein of u 20.3 49 0.0011 21.4 0.7 30 55-85 6-35 (46)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=1.9e-34 Score=266.46 Aligned_cols=400 Identities=26% Similarity=0.412 Sum_probs=244.9
Q ss_pred cCCCChHHHHHHHccCCCccchhhHHHHHHHHHHHHhchhhhhhccchhhHHHHhhhcccccccccccCCCCCcceeecC
Q 006749 50 IDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLTRCLD 129 (632)
Q Consensus 50 ~~~LP~Eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (632)
--.||+|++.+||++|+ .+.+.+++++|+-|+..+.. ...|.++.. +. +++.+.
T Consensus 72 ~~~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD-------------------~~~~q~idL-~t-----~~rDv~ 125 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALD-------------------GSCWQHIDL-FT-----FQRDVD 125 (483)
T ss_pred cccCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhc-------------------cccceeeeh-hc-----chhcCC
Confidence 34699999999999999 99999999999999987532 134443331 00 011111
Q ss_pred CCCccchhhHHHHhcccCCCCcceEEecCccccCccChhhHHHHhhcC-CCCCeEeecCCCCCCchhHHHHHHhCCCCCE
Q 006749 130 GKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHGVTNFGLSAIARGC-PSLKSLSLWNVPSVGDEGLLEIAKECHLLEK 208 (632)
Q Consensus 130 ~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 208 (632)
+. .+..+.+.| ..|++|.+.+|..+.+..+..+...||++++
T Consensus 126 g~-------------------------------------VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIeh 168 (483)
T KOG4341|consen 126 GG-------------------------------------VVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEH 168 (483)
T ss_pred Cc-------------------------------------ceehHhhhhccccccccccccccCCcchhhHHhhhCCchhh
Confidence 11 112222222 3677777777777777777777777777777
Q ss_pred eecCCCCCCCHHHHHHHHhhCCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccc
Q 006749 209 LELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRV 288 (632)
Q Consensus 209 L~L~~~~~~~~~~l~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L 288 (632)
|.+.+|.++++..+..+.+.|++|++|++..|..+++..++.+++.|++|++|+++.|+.+...++..+.++
T Consensus 169 L~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG-------- 240 (483)
T KOG4341|consen 169 LALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG-------- 240 (483)
T ss_pred hhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc--------
Confidence 777777777777777777777777777777777777777777777777777777777766554444433332
Q ss_pred cccccccchhHHHHHhhcCcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceee
Q 006749 289 KLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMC 368 (632)
Q Consensus 289 ~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 368 (632)
+..++.+...||.....+.+.....+++-+.+++
T Consensus 241 ----------------------------------------------~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ln 274 (483)
T KOG4341|consen 241 ----------------------------------------------CKELEKLSLKGCLELELEALLKAAAYCLEILKLN 274 (483)
T ss_pred ----------------------------------------------chhhhhhhhcccccccHHHHHHHhccChHhhccc
Confidence 1122222223333344444444444445555555
Q ss_pred cCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEe
Q 006749 369 LRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLS 448 (632)
Q Consensus 369 L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 448 (632)
+..|..++|.++..+...|.+|+.|..++|
T Consensus 275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~-------------------------------------------------- 304 (483)
T KOG4341|consen 275 LQHCNQLTDEDLWLIACGCHALQVLCYSSC-------------------------------------------------- 304 (483)
T ss_pred hhhhccccchHHHHHhhhhhHhhhhcccCC--------------------------------------------------
Confidence 555555555555544444444444444443
Q ss_pred ccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeee
Q 006749 449 IRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLN 528 (632)
Q Consensus 449 l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~ 528 (632)
..+++..+..+++.+++|+.|.+.+|..+++.++..+..+|+ .|+.+++.+|..+.+..+..++. +++.|+.|.
T Consensus 305 ----t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~-~Le~l~~e~~~~~~d~tL~sls~-~C~~lr~ls 378 (483)
T KOG4341|consen 305 ----TDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP-HLERLDLEECGLITDGTLASLSR-NCPRLRVLS 378 (483)
T ss_pred ----CCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh-hhhhhcccccceehhhhHhhhcc-CCchhccCC
Confidence 345555566666666666666666666666666666666665 66666666666666665665555 667777777
Q ss_pred ccCCCCCChHHHHHHH---hcCCCcCeEeccCCC-CChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCcccc
Q 006749 529 LDGCRKITDASLVAIG---NNCMFLSYLDVSKCA-ITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVG 604 (632)
Q Consensus 529 l~~c~~l~~~~~~~l~---~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~ 604 (632)
+++|..++|.++..+. .+...|+.+.|++|+ +++..++.+. .+++|+.+++-+|..++...+..+...+|+++.
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~--~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS--ICRNLERIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh--hCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence 7777777776665554 234556666666664 4444555555 666677777777766666666666666666666
Q ss_pred ccccccCCCCHHHHHHHHhcc
Q 006749 605 LNLQNCNSINSSTVARLVESL 625 (632)
Q Consensus 605 L~l~~c~~l~~~~~~~l~~~l 625 (632)
..+.. +......++.+.+..
T Consensus 457 ~a~~a-~~t~p~~v~~~~~~v 476 (483)
T KOG4341|consen 457 HAYFA-PVTPPGFVKGLHQRV 476 (483)
T ss_pred hhhcc-CCCCccccccchhhc
Confidence 66555 444444444444433
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=215.03 Aligned_cols=322 Identities=29% Similarity=0.489 Sum_probs=253.5
Q ss_pred CCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhh
Q 006749 149 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 228 (632)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 228 (632)
+.++.|.+.++. .+.+..+..+...||++++|.+.+|.++++..+..+.++|++|++|++..|..+++..+..++..
T Consensus 138 g~lk~LSlrG~r---~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRGCR---AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred cccccccccccc---cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 688999999875 77888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCc
Q 006749 229 CPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGK 308 (632)
Q Consensus 229 l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~ 308 (632)
|++|+.|++++|+.+...++..+.+.+..++.+...+|.......+...... ++
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~--------------------------~~ 268 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY--------------------------CL 268 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc--------------------------Ch
Confidence 9999999999999999999999999999999998888877665555444433 22
Q ss_pred ccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcC
Q 006749 309 ALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAG 388 (632)
Q Consensus 309 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~ 388 (632)
. +.++++..|..+++..+..+..+|..|+.|..++|..+++..+..+.++++
T Consensus 269 ~----------------------------i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 269 E----------------------------ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred H----------------------------hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 2 233333445456666666777777888888888888888888888888888
Q ss_pred CCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCC
Q 006749 389 SLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCP 468 (632)
Q Consensus 389 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~ 468 (632)
+|+.|.+.+|..+++.++..+- .+++.|+.+++.+|....+..+..++..||
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~----------------------------rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLG----------------------------RNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred ceEEEeccccchhhhhhhhhhh----------------------------cCChhhhhhcccccceehhhhHhhhccCCc
Confidence 8888888888777777765542 245555666666666666677888888889
Q ss_pred CCcEEEeccccCCCchhhHHHHhh-c-cCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhc
Q 006749 469 QLQHVDLSGLYGITDVGIFPLLES-C-KAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNN 546 (632)
Q Consensus 469 ~L~~L~l~~~~~l~~~~~~~l~~~-~-~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 546 (632)
.|+.|.+++|..++|+|+..+-.. | -..|+.+.+++|+.+++..++.+.. +++|+.+++.+|..++..++..+..+
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~--c~~Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI--CRNLERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh--CcccceeeeechhhhhhhhhHHHHhh
Confidence 999999999888888887766542 1 1367777778887787777777765 77888888878877777777777777
Q ss_pred CCCcCeEeccC
Q 006749 547 CMFLSYLDVSK 557 (632)
Q Consensus 547 ~~~L~~L~L~~ 557 (632)
+|+++..-+..
T Consensus 451 lp~i~v~a~~a 461 (483)
T KOG4341|consen 451 LPNIKVHAYFA 461 (483)
T ss_pred Cccceehhhcc
Confidence 77777765543
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.7e-25 Score=195.85 Aligned_cols=289 Identities=22% Similarity=0.256 Sum_probs=137.0
Q ss_pred CcCCCChHHHHHHHccCCCccchhhHHHHHHHHHHHHhchhhhhhccchhhHHHHhhhcccccccccccCCCCCcceeec
Q 006749 49 SIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLTRCL 128 (632)
Q Consensus 49 ~~~~LP~Eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (632)
.|..|||||+..||+.|+ .+++.+++.|||||+++.... ..|..+. +
T Consensus 97 ~~~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~de-------------------~lW~~lD-------------l 143 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASDE-------------------SLWQTLD-------------L 143 (419)
T ss_pred CcccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhccccc-------------------cceeeec-------------c
Confidence 488999999999999999 999999999999999986432 3453322 1
Q ss_pred CCCCccchhhHHHHhcccCCCCcceEEecCccccCccChhhHHHHhhcC-CCCCeEeecCCCCCCchhHHHHHHhCCCCC
Q 006749 129 DGKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHGVTNFGLSAIARGC-PSLKSLSLWNVPSVGDEGLLEIAKECHLLE 207 (632)
Q Consensus 129 ~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 207 (632)
.++.+....+-.+.. ..+..+.+... ...++.+.....-+ ..|++|+++.. .++...+..+.+.|.+|+
T Consensus 144 ~~r~i~p~~l~~l~~-----rgV~v~Rlar~----~~~~prlae~~~~frsRlq~lDLS~s-~it~stl~~iLs~C~kLk 213 (419)
T KOG2120|consen 144 TGRNIHPDVLGRLLS-----RGVIVFRLARS----FMDQPRLAEHFSPFRSRLQHLDLSNS-VITVSTLHGILSQCSKLK 213 (419)
T ss_pred CCCccChhHHHHHHh-----CCeEEEEcchh----hhcCchhhhhhhhhhhhhHHhhcchh-heeHHHHHHHHHHHHhhh
Confidence 111111111111100 12222222211 11111111111111 13444444442 344444444444445555
Q ss_pred EeecCCCCCCCHHHHHHHHhhCCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhccc
Q 006749 208 KLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTR 287 (632)
Q Consensus 208 ~L~L~~~~~~~~~~l~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~ 287 (632)
.|.|.+ ..+.+.....+++ -.+|+.|++++|.+++..++..+...|..|.+|+++.|....+. +..+..+...+++.
T Consensus 214 ~lSlEg-~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~ 290 (419)
T KOG2120|consen 214 NLSLEG-LRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQ 290 (419)
T ss_pred hccccc-cccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhh
Confidence 555544 3444444444433 34455555555444444444444444555555555444422222 33333333333555
Q ss_pred cccccc--ccchhHHHHHhhcCcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccc
Q 006749 288 VKLQAL--NITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLK 365 (632)
Q Consensus 288 L~L~~~--~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 365 (632)
|+++++ ++.+..+..+...||++.+|+++.+..+.+..+..+. .++.|++|.++.|+.+....+..+ ...|.|.
T Consensus 291 LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~---kf~~L~~lSlsRCY~i~p~~~~~l-~s~psl~ 366 (419)
T KOG2120|consen 291 LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF---KFNYLQHLSLSRCYDIIPETLLEL-NSKPSLV 366 (419)
T ss_pred hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH---hcchheeeehhhhcCCChHHeeee-ccCcceE
Confidence 555544 2333445556666677777777666555443333222 234555555555544443333222 2234555
Q ss_pred eeecCCCCCCChHHHHHHHHhcCC
Q 006749 366 QMCLRKCCFVSDNGLVAFSKAAGS 389 (632)
Q Consensus 366 ~L~L~~~~~l~~~~l~~l~~~~~~ 389 (632)
+|++.+| ++|..+..+...+++
T Consensus 367 yLdv~g~--vsdt~mel~~e~~~~ 388 (419)
T KOG2120|consen 367 YLDVFGC--VSDTTMELLKEMLSH 388 (419)
T ss_pred EEEeccc--cCchHHHHHHHhCcc
Confidence 5555443 333333333333343
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=5.4e-20 Score=209.29 Aligned_cols=107 Identities=23% Similarity=0.250 Sum_probs=72.1
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 575 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 575 (632)
+|+.|++++| .++......+. .+++|+.|++++| .+.......+. .+++|+.|+|++|.++......+. .+++
T Consensus 476 ~L~~L~ls~n-~l~~~~~~~~~--~l~~L~~L~Ls~N-~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~ 548 (968)
T PLN00113 476 RLENLDLSRN-QFSGAVPRKLG--SLSELMQLKLSEN-KLSGEIPDELS-SCKKLVSLDLSHNQLSGQIPASFS--EMPV 548 (968)
T ss_pred cceEEECcCC-ccCCccChhhh--hhhccCEEECcCC-cceeeCChHHc-CccCCCEEECCCCcccccCChhHh--Cccc
Confidence 6788888775 44443333343 3778888888884 55543333333 488899999999988765555555 6789
Q ss_pred ccEEeccCCCCcCcchHHHHHHhCCccccccccccC
Q 006749 576 LQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCN 611 (632)
Q Consensus 576 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 611 (632)
|+.|++++|. ++.. ++......++|+.|++++|+
T Consensus 549 L~~L~Ls~N~-l~~~-~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 549 LSQLDLSQNQ-LSGE-IPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred CCEEECCCCc-cccc-CChhHhcCcccCEEeccCCc
Confidence 9999999876 5433 33333445679999999865
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=1.1e-19 Score=206.63 Aligned_cols=423 Identities=17% Similarity=0.088 Sum_probs=202.5
Q ss_pred CCCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHh
Q 006749 148 HGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAE 227 (632)
Q Consensus 148 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 227 (632)
.++|+.|+++++. +.......+...+++|++|+++++. +..... ...+++|++|+++++ .++. .++....
T Consensus 92 l~~L~~L~Ls~n~----~~~~ip~~~~~~l~~L~~L~Ls~n~-l~~~~p---~~~l~~L~~L~Ls~n-~~~~-~~p~~~~ 161 (968)
T PLN00113 92 LPYIQTINLSNNQ----LSGPIPDDIFTTSSSLRYLNLSNNN-FTGSIP---RGSIPNLETLDLSNN-MLSG-EIPNDIG 161 (968)
T ss_pred CCCCCEEECCCCc----cCCcCChHHhccCCCCCEEECcCCc-cccccC---ccccCCCCEEECcCC-cccc-cCChHHh
Confidence 4788888888763 3222222333456788888887753 321111 124577777777774 3332 1223334
Q ss_pred hCCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcC
Q 006749 228 NCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYG 307 (632)
Q Consensus 228 ~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~ 307 (632)
++++|++|+++++. +.......+.. +++|++|++++|.... .....+ .... +|+.|.+.++.+.+.....+ ...
T Consensus 162 ~l~~L~~L~L~~n~-l~~~~p~~~~~-l~~L~~L~L~~n~l~~-~~p~~l-~~l~-~L~~L~L~~n~l~~~~p~~l-~~l 235 (968)
T PLN00113 162 SFSSLKVLDLGGNV-LVGKIPNSLTN-LTSLEFLTLASNQLVG-QIPREL-GQMK-SLKWIYLGYNNLSGEIPYEI-GGL 235 (968)
T ss_pred cCCCCCEEECccCc-ccccCChhhhh-CcCCCeeeccCCCCcC-cCChHH-cCcC-CccEEECcCCccCCcCChhH-hcC
Confidence 57777777777643 32223334444 6777777777654211 111111 1111 26666666666554333222 234
Q ss_pred cccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhc
Q 006749 308 KALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAA 387 (632)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~ 387 (632)
++|+.|+++++... ... ...+..+++|++|+++++. +.......+ ..+++|++|++++|. +... +...+..+
T Consensus 236 ~~L~~L~L~~n~l~-~~~---p~~l~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~Ls~n~-l~~~-~p~~~~~l 307 (968)
T PLN00113 236 TSLNHLDLVYNNLT-GPI---PSSLGNLKNLQYLFLYQNK-LSGPIPPSI-FSLQKLISLDLSDNS-LSGE-IPELVIQL 307 (968)
T ss_pred CCCCEEECcCceec-ccc---ChhHhCCCCCCEEECcCCe-eeccCchhH-hhccCcCEEECcCCe-eccC-CChhHcCC
Confidence 66666666655321 100 0112334556666665543 211111111 223555566555542 2111 11222344
Q ss_pred CCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCC-------------
Q 006749 388 GSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPG------------- 454 (632)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------- 454 (632)
++|+.|++.++.-..... .. ...+++|+.|++++|...... +..+..+++|+.|++++|..
T Consensus 308 ~~L~~L~l~~n~~~~~~~--~~-~~~l~~L~~L~L~~n~l~~~~---p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIP--VA-LTSLPRLQVLQLWSNKFSGEI---PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred CCCcEEECCCCccCCcCC--hh-HhcCCCCCEEECcCCCCcCcC---ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 555555555433111100 00 111245555555554322221 11123344444444444421
Q ss_pred ----------CCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCC
Q 006749 455 ----------FGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETL 524 (632)
Q Consensus 455 ----------l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L 524 (632)
+.......+ ..+++|+.|+++++ .++... ...+...+ .|+.|+++++ .++......+. .+++|
T Consensus 382 L~~L~l~~n~l~~~~p~~~-~~~~~L~~L~L~~n-~l~~~~-p~~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~--~l~~L 454 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSL-GACRSLRRVRLQDN-SFSGEL-PSEFTKLP-LVYFLDISNN-NLQGRINSRKW--DMPSL 454 (968)
T ss_pred CCEEECcCCEecccCCHHH-hCCCCCCEEECcCC-EeeeEC-ChhHhcCC-CCCEEECcCC-cccCccChhhc--cCCCC
Confidence 111111111 23466666666653 222111 11122233 6777777663 34332222222 36777
Q ss_pred CeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCcccc
Q 006749 525 ELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVG 604 (632)
Q Consensus 525 ~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~ 604 (632)
+.|++++| .+...... .. ..++|+.|++++|+++......+. .+++|+.|++++|. ++...... ...+++|++
T Consensus 455 ~~L~L~~n-~~~~~~p~-~~-~~~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~-l~~~~p~~-~~~l~~L~~ 527 (968)
T PLN00113 455 QMLSLARN-KFFGGLPD-SF-GSKRLENLDLSRNQFSGAVPRKLG--SLSELMQLKLSENK-LSGEIPDE-LSSCKKLVS 527 (968)
T ss_pred cEEECcCc-eeeeecCc-cc-ccccceEEECcCCccCCccChhhh--hhhccCEEECcCCc-ceeeCChH-HcCccCCCE
Confidence 77777774 33221111 11 256788888888887765444444 67789999999965 54433333 344667999
Q ss_pred ccccccCCCCH
Q 006749 605 LNLQNCNSINS 615 (632)
Q Consensus 605 L~l~~c~~l~~ 615 (632)
|++++| .++.
T Consensus 528 L~Ls~N-~l~~ 537 (968)
T PLN00113 528 LDLSHN-QLSG 537 (968)
T ss_pred EECCCC-cccc
Confidence 999994 4553
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=9e-21 Score=183.20 Aligned_cols=379 Identities=16% Similarity=0.202 Sum_probs=222.6
Q ss_pred CCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhhCCCCcEEeccCCCCCCchHHHHHhhcCCCC
Q 006749 179 SLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNL 258 (632)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L 258 (632)
.-+.|++++. .+.+.++..+ .++|+|+++++.. +.++. ++.+.....+|++|+|.. +.++...-+.+.. +|.|
T Consensus 79 ~t~~LdlsnN-kl~~id~~~f-~nl~nLq~v~l~~-N~Lt~--IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~-l~al 151 (873)
T KOG4194|consen 79 QTQTLDLSNN-KLSHIDFEFF-YNLPNLQEVNLNK-NELTR--IPRFGHESGHLEKLDLRH-NLISSVTSEELSA-LPAL 151 (873)
T ss_pred ceeeeecccc-ccccCcHHHH-hcCCcceeeeecc-chhhh--cccccccccceeEEeeec-cccccccHHHHHh-Hhhh
Confidence 5666777764 5666665544 3677888877776 34442 444444456677777775 3344444444444 6667
Q ss_pred cEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCcccceecccCCCCCcccchhhcccccCCCCc
Q 006749 259 QCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKL 338 (632)
Q Consensus 259 ~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L 338 (632)
+.|+++.+. ++......++.. .++++|+|.++.|++.....+. ++.+|
T Consensus 152 rslDLSrN~-is~i~~~sfp~~--~ni~~L~La~N~It~l~~~~F~-----------------------------~lnsL 199 (873)
T KOG4194|consen 152 RSLDLSRNL-ISEIPKPSFPAK--VNIKKLNLASNRITTLETGHFD-----------------------------SLNSL 199 (873)
T ss_pred hhhhhhhch-hhcccCCCCCCC--CCceEEeecccccccccccccc-----------------------------ccchh
Confidence 777776542 221111111111 1355555555555443333322 23456
Q ss_pred ceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCC--CcchhhHHHHHhccccc
Q 006749 339 VSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECN--RVSQSGILGVVSNSASK 416 (632)
Q Consensus 339 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~ 416 (632)
..|.++.+. ++..+...+ .++|+|+.|+|..+ .+...... .++.+++|+.|.+..+. .+.+..+.. +.+
T Consensus 200 ~tlkLsrNr-ittLp~r~F-k~L~~L~~LdLnrN-~irive~l-tFqgL~Sl~nlklqrN~I~kL~DG~Fy~-----l~k 270 (873)
T KOG4194|consen 200 LTLKLSRNR-ITTLPQRSF-KRLPKLESLDLNRN-RIRIVEGL-TFQGLPSLQNLKLQRNDISKLDDGAFYG-----LEK 270 (873)
T ss_pred eeeecccCc-ccccCHHHh-hhcchhhhhhcccc-ceeeehhh-hhcCchhhhhhhhhhcCcccccCcceee-----ecc
Confidence 666666554 444333333 44577777777664 33221111 12456677777665532 222322222 277
Q ss_pred ccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCC---CchhhHHHHhhc
Q 006749 417 LKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGI---TDVGIFPLLESC 493 (632)
Q Consensus 417 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l---~~~~~~~l~~~~ 493 (632)
+++|++..+. +... ...++-++..|+.|+++.|. +........ ..+++|+.|+|+. +.+ +...+..+
T Consensus 271 me~l~L~~N~-l~~v--n~g~lfgLt~L~~L~lS~Na-I~rih~d~W-sftqkL~~LdLs~-N~i~~l~~~sf~~L---- 340 (873)
T KOG4194|consen 271 MEHLNLETNR-LQAV--NEGWLFGLTSLEQLDLSYNA-IQRIHIDSW-SFTQKLKELDLSS-NRITRLDEGSFRVL---- 340 (873)
T ss_pred cceeecccch-hhhh--hcccccccchhhhhccchhh-hheeecchh-hhcccceeEeccc-cccccCChhHHHHH----
Confidence 7777777633 2211 12234567888888888763 221111111 1358899999987 444 44445444
Q ss_pred cCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCC----hHHHHHHHhcCCCcCeEeccCCCCChhHHHhhh
Q 006749 494 KAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKIT----DASLVAIGNNCMFLSYLDVSKCAITDMGISALS 569 (632)
Q Consensus 494 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~----~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~ 569 (632)
..|++|+|+. +.+....-..+. .+.+|++|+++. |.+. | + .....++++|++|++.+|++....-..+.
T Consensus 341 -~~Le~LnLs~-Nsi~~l~e~af~--~lssL~~LdLr~-N~ls~~IED-a-a~~f~gl~~LrkL~l~gNqlk~I~krAfs 413 (873)
T KOG4194|consen 341 -SQLEELNLSH-NSIDHLAEGAFV--GLSSLHKLDLRS-NELSWCIED-A-AVAFNGLPSLRKLRLTGNQLKSIPKRAFS 413 (873)
T ss_pred -HHhhhhcccc-cchHHHHhhHHH--HhhhhhhhcCcC-CeEEEEEec-c-hhhhccchhhhheeecCceeeecchhhhc
Confidence 2789999987 455443333333 478999999987 5543 3 2 22334599999999999987665555555
Q ss_pred hhccCCccEEeccCCCCcCcchHHHHHHhCCccccccccccCCCCHHHHHHHHhcccc
Q 006749 570 HAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESLWR 627 (632)
Q Consensus 570 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~l~~ 627 (632)
.++.|+.|+|.++. |......++..+ .|++|.+..-+-+.+..+.++.+|+.+
T Consensus 414 --gl~~LE~LdL~~Na-iaSIq~nAFe~m--~Lk~Lv~nSssflCDCql~Wl~qWl~~ 466 (873)
T KOG4194|consen 414 --GLEALEHLDLGDNA-IASIQPNAFEPM--ELKELVMNSSSFLCDCQLKWLAQWLYR 466 (873)
T ss_pred --cCcccceecCCCCc-ceeecccccccc--hhhhhhhcccceEEeccHHHHHHHHHh
Confidence 78899999999965 755556666655 699999987678889999999988743
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.68 E-value=6.7e-18 Score=163.56 Aligned_cols=377 Identities=19% Similarity=0.183 Sum_probs=206.4
Q ss_pred CCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhh
Q 006749 149 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 228 (632)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 228 (632)
+..+.|+++++ .+.+..+..+. ..++|+++.+... .++ .++.+.....+|+.|+|.+ +.++...-.++ ..
T Consensus 78 ~~t~~LdlsnN----kl~~id~~~f~-nl~nLq~v~l~~N-~Lt--~IP~f~~~sghl~~L~L~~-N~I~sv~se~L-~~ 147 (873)
T KOG4194|consen 78 SQTQTLDLSNN----KLSHIDFEFFY-NLPNLQEVNLNKN-ELT--RIPRFGHESGHLEKLDLRH-NLISSVTSEEL-SA 147 (873)
T ss_pred cceeeeecccc----ccccCcHHHHh-cCCcceeeeeccc-hhh--hcccccccccceeEEeeec-cccccccHHHH-Hh
Confidence 46678999988 67777777665 6899999999764 232 3344444556899999998 55554333333 34
Q ss_pred CCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCc
Q 006749 229 CPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGK 308 (632)
Q Consensus 229 l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~ 308 (632)
+|.|++|||+. +.++......+.. -+++++|++.++. +++.+...+... ++|..|+|+.+.++......+. ..+
T Consensus 148 l~alrslDLSr-N~is~i~~~sfp~-~~ni~~L~La~N~-It~l~~~~F~~l--nsL~tlkLsrNrittLp~r~Fk-~L~ 221 (873)
T KOG4194|consen 148 LPALRSLDLSR-NLISEIPKPSFPA-KVNIKKLNLASNR-ITTLETGHFDSL--NSLLTLKLSRNRITTLPQRSFK-RLP 221 (873)
T ss_pred Hhhhhhhhhhh-chhhcccCCCCCC-CCCceEEeecccc-cccccccccccc--chheeeecccCcccccCHHHhh-hcc
Confidence 78999999996 3444333333333 5789999999864 444443333322 1388889999988876554443 346
Q ss_pred ccceecccCCCCCcccchhhcccccCCCCcceEeccCCC--CCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHh
Q 006749 309 ALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGG--GVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKA 386 (632)
Q Consensus 309 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~ 386 (632)
.|+.|++..+.. .... ....+++++|+.|.+..+. .+.+.. +..+.++++|+|..+ .+....-.. +-+
T Consensus 222 ~L~~LdLnrN~i-rive---~ltFqgL~Sl~nlklqrN~I~kL~DG~----Fy~l~kme~l~L~~N-~l~~vn~g~-lfg 291 (873)
T KOG4194|consen 222 KLESLDLNRNRI-RIVE---GLTFQGLPSLQNLKLQRNDISKLDDGA----FYGLEKMEHLNLETN-RLQAVNEGW-LFG 291 (873)
T ss_pred hhhhhhccccce-eeeh---hhhhcCchhhhhhhhhhcCcccccCcc----eeeecccceeecccc-hhhhhhccc-ccc
Confidence 666666655421 1000 1112334444444444331 111111 122344555555442 111100000 112
Q ss_pred cCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhc
Q 006749 387 AGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKL 466 (632)
Q Consensus 387 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~ 466 (632)
+ ..|+.|+++.+. +..+.. ..-..+++|+.|+++.|. ++...-..+..
T Consensus 292 L---------------------------t~L~~L~lS~Na-I~rih~--d~WsftqkL~~LdLs~N~-i~~l~~~sf~~- 339 (873)
T KOG4194|consen 292 L---------------------------TSLEQLDLSYNA-IQRIHI--DSWSFTQKLKELDLSSNR-ITRLDEGSFRV- 339 (873)
T ss_pred c---------------------------chhhhhccchhh-hheeec--chhhhcccceeEeccccc-cccCChhHHHH-
Confidence 3 444444444421 111111 112345666666666653 33222222221
Q ss_pred CCCCcEEEeccccCCC---chhhHHHHhhccCCccEEecCCCCCC----ChHHHHHHHhhcCCCCCeeeccCCCCCChHH
Q 006749 467 CPQLQHVDLSGLYGIT---DVGIFPLLESCKAGLVKVNLSGCLNL----TDEVVLALARLHSETLELLNLDGCRKITDAS 539 (632)
Q Consensus 467 ~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~~L~~L~l~~c~~l----~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~ 539 (632)
+..|++|.|++ +.++ +..+..+ ++|++|+|.. +.+ .| +...+. .+++|+.|.+.+ |++....
T Consensus 340 L~~Le~LnLs~-Nsi~~l~e~af~~l-----ssL~~LdLr~-N~ls~~IED-aa~~f~--gl~~LrkL~l~g-Nqlk~I~ 408 (873)
T KOG4194|consen 340 LSQLEELNLSH-NSIDHLAEGAFVGL-----SSLHKLDLRS-NELSWCIED-AAVAFN--GLPSLRKLRLTG-NQLKSIP 408 (873)
T ss_pred HHHhhhhcccc-cchHHHHhhHHHHh-----hhhhhhcCcC-CeEEEEEec-chhhhc--cchhhhheeecC-ceeeecc
Confidence 25667777765 3332 1111111 2666666655 222 23 222222 478888999988 6776655
Q ss_pred HHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHh
Q 006749 540 LVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKL 598 (632)
Q Consensus 540 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 598 (632)
-..+. ++++|++|+|.+|.|-......+. .+ .|++|.+..-+.+.|..+.|+.+.
T Consensus 409 krAfs-gl~~LE~LdL~~NaiaSIq~nAFe--~m-~Lk~Lv~nSssflCDCql~Wl~qW 463 (873)
T KOG4194|consen 409 KRAFS-GLEALEHLDLGDNAIASIQPNAFE--PM-ELKELVMNSSSFLCDCQLKWLAQW 463 (873)
T ss_pred hhhhc-cCcccceecCCCCcceeecccccc--cc-hhhhhhhcccceEEeccHHHHHHH
Confidence 55544 488899999988876655445444 44 788888877666777777775553
No 8
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.61 E-value=1.3e-14 Score=152.76 Aligned_cols=290 Identities=31% Similarity=0.511 Sum_probs=193.3
Q ss_pred HHHhCCCCCEeecCCCC-CCCHHHHHHHHhhCCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCC-CCcchhhHHH
Q 006749 199 IAKECHLLEKLELCHCP-SISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDC-PLVRDQGISS 276 (632)
Q Consensus 199 ~~~~~~~L~~L~L~~~~-~~~~~~l~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~ 276 (632)
....+..++.+.+..+. .........+...++.|+.|.+.+|..+++..+..+...+++|++|+++++ ......+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 235 (482)
T KOG1947|consen 156 LSRGLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL 235 (482)
T ss_pred HHHHHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh
Confidence 33344555555555443 233444555555578888888888777777667677777888888887763 2211111100
Q ss_pred HHhhhhhhcccccccccccchhHHHHHhhcCcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHH
Q 006749 277 LLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEA 356 (632)
Q Consensus 277 l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 356 (632)
. .....+++|++|+++++..+++..+..
T Consensus 236 ~----------------------------------------------------~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 236 L----------------------------------------------------LLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred h----------------------------------------------------hhhhhcCCcCccchhhhhccCchhHHH
Confidence 0 011234677777777776678888888
Q ss_pred HhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccc
Q 006749 357 MGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMP 436 (632)
Q Consensus 357 l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 436 (632)
++..|++|++|.+.+|..+++.++..+...|+.|++|++.+|..+++.++...... +++++.|.+..+.
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~-c~~l~~l~~~~~~---------- 332 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN-CPNLRELKLLSLN---------- 332 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh-CcchhhhhhhhcC----------
Confidence 88888889998888887788888888888888899999988888888777777545 5777776665532
Q ss_pred cCCCCCCCCeEeccCCCCCC-HHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHH
Q 006749 437 MLSPNCSLRSLSIRNCPGFG-NASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLA 515 (632)
Q Consensus 437 ~~~~~~~L~~L~l~~~~~l~-~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~ 515 (632)
.++.++.+.+.++.... +......+..|++++++.+..+. ..+.+.... +.+|+.++ ..+..
T Consensus 333 ---~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~------------l~gc~~l~-~~l~~ 395 (482)
T KOG1947|consen 333 ---GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELS------------LRGCPNLT-ESLEL 395 (482)
T ss_pred ---CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHH------------hcCCcccc-hHHHH
Confidence 25566666666665555 46666677778888888888766 655554333 34555665 44444
Q ss_pred HHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCC-CChhHHHhhh
Q 006749 516 LARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCA-ITDMGISALS 569 (632)
Q Consensus 516 l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~ 569 (632)
... ....++.|.+..|...++..+......+.+++.+++.++. ++......+.
T Consensus 396 ~~~-~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 449 (482)
T KOG1947|consen 396 RLC-RSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFA 449 (482)
T ss_pred Hhc-cCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhhhhh
Confidence 443 3444888999988888888877776557888888888885 4444444444
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.61 E-value=5.7e-14 Score=139.06 Aligned_cols=175 Identities=26% Similarity=0.373 Sum_probs=87.7
Q ss_pred CCCCeEeccCCCCCCHHHHHHHh---hcC-CCCcEEEeccccCCCchhhHHHH---hhccCCccEEecCCCCCCChHHHH
Q 006749 442 CSLRSLSIRNCPGFGNASLAMLG---KLC-PQLQHVDLSGLYGITDVGIFPLL---ESCKAGLVKVNLSGCLNLTDEVVL 514 (632)
Q Consensus 442 ~~L~~L~l~~~~~l~~~~l~~~~---~~~-~~L~~L~l~~~~~l~~~~~~~l~---~~~~~~L~~L~l~~c~~l~~~~~~ 514 (632)
++|++|++++|. +++.....+. ..+ ++|+.|++++| .++..+...+. ..++ +|++|++++| .+++..+.
T Consensus 108 ~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~-~L~~L~l~~n-~l~~~~~~ 183 (319)
T cd00116 108 SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANR-DLKELNLANN-GIGDAGIR 183 (319)
T ss_pred CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCC-CcCEEECcCC-CCchHHHH
Confidence 446666666554 3333322221 223 56666666663 34433333222 2222 5666666664 45544433
Q ss_pred HHHh--hcCCCCCeeeccCCCCCChHHHHHHH---hcCCCcCeEeccCCCCChhHHHhhhhh---ccCCccEEeccCCCC
Q 006749 515 ALAR--LHSETLELLNLDGCRKITDASLVAIG---NNCMFLSYLDVSKCAITDMGISALSHA---EQLNLQVLSLSSCSE 586 (632)
Q Consensus 515 ~l~~--~~~~~L~~L~l~~c~~l~~~~~~~l~---~~~~~L~~L~L~~~~i~~~~~~~l~~~---~~~~L~~L~l~~c~~ 586 (632)
.+.. ...++|+.|++++| .+++.+...+. ..+++|++|++++|.+++.++..+... ..+.|++|++++|.
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~- 261 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND- 261 (319)
T ss_pred HHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-
Confidence 3321 02346666666664 55554443332 345666777776666666555555411 12566677776654
Q ss_pred cCcchHHHHHHh---CCccccccccccCCCCHHHHHHHHh
Q 006749 587 VSNKSMPALKKL---GKTLVGLNLQNCNSINSSTVARLVE 623 (632)
Q Consensus 587 l~~~~~~~~~~~---~~~L~~L~l~~c~~l~~~~~~~l~~ 623 (632)
+++.+...+... .++|++|++++ +.+++.+...+.+
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~-N~l~~~~~~~~~~ 300 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRG-NKFGEEGAQLLAE 300 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCC-CCCcHHHHHHHHH
Confidence 544343332222 24566666666 5666665555544
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.8e-15 Score=131.72 Aligned_cols=206 Identities=24% Similarity=0.338 Sum_probs=144.1
Q ss_pred hcccccccccccchhHHHHHhhcCcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCc
Q 006749 284 VLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLN 363 (632)
Q Consensus 284 ~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 363 (632)
.++.++|+...++...+..+...|..|+.|.+.+. . +++.....++.+ .+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~----------------------------~-LdD~I~~~iAkN-~~ 235 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL----------------------------R-LDDPIVNTIAKN-SN 235 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc----------------------------c-cCcHHHHHHhcc-cc
Confidence 37777777777777766666666555555544433 3 555555556554 78
Q ss_pred cceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCC
Q 006749 364 LKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCS 443 (632)
Q Consensus 364 L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 443 (632)
|+.|+|+.|.+++..++..++.+|.+|.+|+++.|...++. +...+.+..++|+.|++++|.
T Consensus 236 L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~r----------------- 297 (419)
T KOG2120|consen 236 LVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYR----------------- 297 (419)
T ss_pred ceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhH-----------------
Confidence 88888888888888888888888888999988888765554 433333333445554444421
Q ss_pred CCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCC
Q 006749 444 LRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSET 523 (632)
Q Consensus 444 L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~ 523 (632)
+++....+..+.+.||+|.+||++.|..+++.-+..+++ ++ .|++|.++.|..+....+-.+.. .|+
T Consensus 298 ---------rnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~-~L~~lSlsRCY~i~p~~~~~l~s--~ps 364 (419)
T KOG2120|consen 298 ---------RNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FN-YLQHLSLSRCYDIIPETLLELNS--KPS 364 (419)
T ss_pred ---------hhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-cc-hheeeehhhhcCCChHHeeeecc--Ccc
Confidence 235556778888889999999999988888855555544 33 79999999998877666554443 789
Q ss_pred CCeeeccCCCCCChHHHHHHHhcCCCcCe
Q 006749 524 LELLNLDGCRKITDASLVAIGNNCMFLSY 552 (632)
Q Consensus 524 L~~L~l~~c~~l~~~~~~~l~~~~~~L~~ 552 (632)
|.+|++.+| +.|...+.+.+.|++|+.
T Consensus 365 l~yLdv~g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 365 LVYLDVFGC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred eEEEEeccc--cCchHHHHHHHhCccccc
Confidence 999999886 666677777777887765
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.59 E-value=1.7e-13 Score=135.68 Aligned_cols=163 Identities=31% Similarity=0.354 Sum_probs=104.5
Q ss_pred CCCCeEeccCCCCCCHH---HHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhcc--CCccEEecCCCCCCChHHHHHH
Q 006749 442 CSLRSLSIRNCPGFGNA---SLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK--AGLVKVNLSGCLNLTDEVVLAL 516 (632)
Q Consensus 442 ~~L~~L~l~~~~~l~~~---~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~--~~L~~L~l~~c~~l~~~~~~~l 516 (632)
++|+.|++++|. ++.. .+......+++|++|++++ ..+++.++..+....+ ++|++|++++| .+++.....+
T Consensus 137 ~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l 213 (319)
T cd00116 137 PALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLAN-NGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASAL 213 (319)
T ss_pred CCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcC-CCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHH
Confidence 667777777765 3322 2233333456788888887 5666555554433221 37888888886 5665554433
Q ss_pred Hh--hcCCCCCeeeccCCCCCChHHHHHHHhcC----CCcCeEeccCCCCChhHHHhhhh--hccCCccEEeccCCCCcC
Q 006749 517 AR--LHSETLELLNLDGCRKITDASLVAIGNNC----MFLSYLDVSKCAITDMGISALSH--AEQLNLQVLSLSSCSEVS 588 (632)
Q Consensus 517 ~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~~~----~~L~~L~L~~~~i~~~~~~~l~~--~~~~~L~~L~l~~c~~l~ 588 (632)
.. ..+++|++|++++| .+++.++..+...+ +.|++|++++|.+++.+...+.. ..+++|+++++++|. ++
T Consensus 214 ~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~ 291 (319)
T cd00116 214 AETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FG 291 (319)
T ss_pred HHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-Cc
Confidence 22 14678999999884 78877777766544 78999999999888766655442 255788999998855 76
Q ss_pred cchHHHHHH----hCCccccccccc
Q 006749 589 NKSMPALKK----LGKTLVGLNLQN 609 (632)
Q Consensus 589 ~~~~~~~~~----~~~~L~~L~l~~ 609 (632)
+.....+.. ..+.|++|+|.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 292 EEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHHHHhhcCCchhhcccCC
Confidence 654443332 225688888876
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.56 E-value=1.3e-14 Score=165.31 Aligned_cols=291 Identities=17% Similarity=0.237 Sum_probs=167.7
Q ss_pred cccccccccccchhHHHHHhhcCcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCcc
Q 006749 285 LTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNL 364 (632)
Q Consensus 285 L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 364 (632)
|..|++.++.+..... -...+++|+.|+++++..+.... .+..+++|++|++++|..+...+ .....+++|
T Consensus 613 L~~L~L~~s~l~~L~~--~~~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~L~~lp--~si~~L~~L 683 (1153)
T PLN03210 613 LVKLQMQGSKLEKLWD--GVHSLTGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSSLVELP--SSIQYLNKL 683 (1153)
T ss_pred CcEEECcCcccccccc--ccccCCCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCCccccc--hhhhccCCC
Confidence 6666666655543211 11345677777777654332221 23456788888888776554322 222456788
Q ss_pred ceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCC
Q 006749 365 KQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSL 444 (632)
Q Consensus 365 ~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 444 (632)
+.|++++|..+... +... .+++|+.|++++|..+.... ...++|+.|+++++. +..++ ....+++|
T Consensus 684 ~~L~L~~c~~L~~L--p~~i-~l~sL~~L~Lsgc~~L~~~p------~~~~nL~~L~L~~n~-i~~lP----~~~~l~~L 749 (1153)
T PLN03210 684 EDLDMSRCENLEIL--PTGI-NLKSLYRLNLSGCSRLKSFP------DISTNISWLDLDETA-IEEFP----SNLRLENL 749 (1153)
T ss_pred CEEeCCCCCCcCcc--CCcC-CCCCCCEEeCCCCCCccccc------cccCCcCeeecCCCc-ccccc----cccccccc
Confidence 88888877655332 1111 46778888888776543321 112577788877654 22221 11246677
Q ss_pred CeEeccCCCCCCH----HH-HHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhh
Q 006749 445 RSLSIRNCPGFGN----AS-LAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARL 519 (632)
Q Consensus 445 ~~L~l~~~~~l~~----~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 519 (632)
++|.+.++....- .. .......+++|+.|++++|..+.. +...+..++ +|+.|++++|.++...... .
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~--lP~si~~L~-~L~~L~Ls~C~~L~~LP~~--~-- 822 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE--LPSSIQNLH-KLEHLEIENCINLETLPTG--I-- 822 (1153)
T ss_pred ccccccccchhhccccccccchhhhhccccchheeCCCCCCccc--cChhhhCCC-CCCEEECCCCCCcCeeCCC--C--
Confidence 7777765431100 00 001122346888888887654432 122233444 7888888888766542211 1
Q ss_pred cCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhC
Q 006749 520 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLG 599 (632)
Q Consensus 520 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 599 (632)
.+++|+.|++++|..+.. +....++|+.|+|++|.++... ..+. .+++|+.|++.+|++++. ++.....+
T Consensus 823 ~L~sL~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n~i~~iP-~si~--~l~~L~~L~L~~C~~L~~--l~~~~~~L 892 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRT-----FPDISTNISDLNLSRTGIEEVP-WWIE--KFSNLSFLDMNGCNNLQR--VSLNISKL 892 (1153)
T ss_pred CccccCEEECCCCCcccc-----ccccccccCEeECCCCCCccCh-HHHh--cCCCCCEEECCCCCCcCc--cCcccccc
Confidence 367888888888876643 2233567888888888776422 2233 677888888888888854 33223345
Q ss_pred CccccccccccCCCCH
Q 006749 600 KTLVGLNLQNCNSINS 615 (632)
Q Consensus 600 ~~L~~L~l~~c~~l~~ 615 (632)
++|+.+++++|++++.
T Consensus 893 ~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 893 KHLETVDFSDCGALTE 908 (1153)
T ss_pred cCCCeeecCCCccccc
Confidence 6688888888887764
No 13
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.50 E-value=2.2e-13 Score=143.56 Aligned_cols=179 Identities=30% Similarity=0.494 Sum_probs=98.3
Q ss_pred CCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCC---CCCCChHHHHHHH
Q 006749 441 NCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSG---CLNLTDEVVLALA 517 (632)
Q Consensus 441 ~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~---c~~l~~~~~~~l~ 517 (632)
+++|++|.+..|..+++..+..++..|++|++|++++|..+++.++..+...|+ +++.|.+.. |..+++..+....
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~-~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP-NLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc-chhhhhhhhcCCCccHHHHHHHHhh
Confidence 445555555555555566666666666666666666666665655655555554 444444333 2234333333222
Q ss_pred hhcC-CCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCC-CChhHHHhhhhhccCCccEEeccCCCCcCcchHHHH
Q 006749 518 RLHS-ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCA-ITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPAL 595 (632)
Q Consensus 518 ~~~~-~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~ 595 (632)
. .. ..+..+.+.+|..+++..+.... .......+.+.+|+ ++ .++.... ..+..++.|.+..|..+++..+...
T Consensus 347 ~-~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~-~~~~~l~~L~l~~~~~~t~~~l~~~ 422 (482)
T KOG1947|consen 347 T-LTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRL-CRSDSLRVLNLSDCRLVTDKGLRCL 422 (482)
T ss_pred c-cCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHh-ccCCccceEecccCccccccchHHH
Confidence 2 11 13333333333333333333222 11111123333342 33 3333333 2333489999999999999988876
Q ss_pred HHhCCccccccccccCCCCHHHHHHHHhc
Q 006749 596 KKLGKTLVGLNLQNCNSINSSTVARLVES 624 (632)
Q Consensus 596 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 624 (632)
...+.++..+++.+|..++......+.+.
T Consensus 423 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 423 ADSCSNLKDLDLSGCRVITLKSLEGFASN 451 (482)
T ss_pred hhhhhccccCCccCcccccchhhhhhhcc
Confidence 66577899999999999999888766554
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.46 E-value=5.2e-13 Score=152.43 Aligned_cols=340 Identities=17% Similarity=0.176 Sum_probs=159.2
Q ss_pred hcCCCCCeEeecCCCC--CCc--hhHHHHHHhC-CCCCEeecCCCCCCCHHHHHHHHhhCCCCcEEeccCCCCCCchHHH
Q 006749 175 RGCPSLKSLSLWNVPS--VGD--EGLLEIAKEC-HLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQ 249 (632)
Q Consensus 175 ~~~~~L~~L~l~~~~~--~~~--~~~~~~~~~~-~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~L~~~~~~~~~~~~ 249 (632)
..+++|+.|.+..... ... ..+..-...+ ++|+.|.+.+. .+.. ++..+ ...+|+.|++.++. +.. ...
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~--lP~~f-~~~~L~~L~L~~s~-l~~-L~~ 628 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRC--MPSNF-RPENLVKLQMQGSK-LEK-LWD 628 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCC--CCCcC-CccCCcEEECcCcc-ccc-ccc
Confidence 4688999998864310 000 0111111233 46888888774 2221 21111 25688888888743 321 112
Q ss_pred HHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCcccceecccCCCCCcccchhhc
Q 006749 250 AIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVM 329 (632)
Q Consensus 250 ~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 329 (632)
.+ ..+++|+.|+++++..+...+- + ... .+|+.|.+.++......... ....++|+.|++++|..+....
T Consensus 629 ~~-~~l~~Lk~L~Ls~~~~l~~ip~--l-s~l-~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp---- 698 (1153)
T PLN03210 629 GV-HSLTGLRNIDLRGSKNLKEIPD--L-SMA-TNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILP---- 698 (1153)
T ss_pred cc-ccCCCCCEEECCCCCCcCcCCc--c-ccC-CcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccC----
Confidence 22 2378888888887654332221 1 111 22666666654322111111 2334667777777664433211
Q ss_pred ccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcch----hh
Q 006749 330 GNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQ----SG 405 (632)
Q Consensus 330 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~----~~ 405 (632)
....+++|+.|++++|..+.. +....++|+.|+++++. +.. ++... .+++|++|.+.++..... ..
T Consensus 699 -~~i~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~-i~~--lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 699 -TGINLKSLYRLNLSGCSRLKS-----FPDISTNISWLDLDETA-IEE--FPSNL-RLENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred -CcCCCCCCCEEeCCCCCCccc-----cccccCCcCeeecCCCc-ccc--ccccc-cccccccccccccchhhccccccc
Confidence 112456777777777653322 11123567777776643 211 11111 345666666654321100 00
Q ss_pred HHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchh
Q 006749 406 ILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVG 485 (632)
Q Consensus 406 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 485 (632)
........+++|+.|++++|.....++ ..+..+++|+.|++++|..+...+.. . .+++|+.|++++|..+..-
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP---~si~~L~~L~~L~Ls~C~~L~~LP~~--~-~L~sL~~L~Ls~c~~L~~~- 841 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELP---SSIQNLHKLEHLEIENCINLETLPTG--I-NLESLESLDLSGCSRLRTF- 841 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccC---hhhhCCCCCCEEECCCCCCcCeeCCC--C-CccccCEEECCCCCccccc-
Confidence 001111123566666666665544432 22445666666666666544321110 0 2456666666665444211
Q ss_pred hHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCC
Q 006749 486 IFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKC 558 (632)
Q Consensus 486 ~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~ 558 (632)
.. .+.+|+.|+++++ .+..... .+. .+++|+.|++++|+++..... -...+++|+.+++++|
T Consensus 842 -p~----~~~nL~~L~Ls~n-~i~~iP~-si~--~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 842 -PD----ISTNISDLNLSRT-GIEEVPW-WIE--KFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDC 903 (1153)
T ss_pred -cc----cccccCEeECCCC-CCccChH-HHh--cCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCC
Confidence 00 0125666666552 3332211 122 355666666666655544221 1123455555555555
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.42 E-value=6e-15 Score=144.51 Aligned_cols=368 Identities=17% Similarity=0.162 Sum_probs=171.2
Q ss_pred CCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhh
Q 006749 149 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 228 (632)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 228 (632)
|.+|-+++++++ +....+..-.+.+..++-|.+... .+. .++.-..++.+|++|.+++. .+.. +..-...
T Consensus 7 pFVrGvDfsgND----Fsg~~FP~~v~qMt~~~WLkLnrt-~L~--~vPeEL~~lqkLEHLs~~HN-~L~~--vhGELs~ 76 (1255)
T KOG0444|consen 7 PFVRGVDFSGND----FSGDRFPHDVEQMTQMTWLKLNRT-KLE--QVPEELSRLQKLEHLSMAHN-QLIS--VHGELSD 76 (1255)
T ss_pred ceeecccccCCc----CCCCcCchhHHHhhheeEEEechh-hhh--hChHHHHHHhhhhhhhhhhh-hhHh--hhhhhcc
Confidence 566666777663 332222222345667888887653 121 22333446778888888773 3332 2222234
Q ss_pred CCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCc
Q 006749 229 CPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGK 308 (632)
Q Consensus 229 l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~ 308 (632)
+|.|+.+.+..+.--+......+.+ +..|..|+++.+. +.... .. .... +++-.|+|++++|.......+
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~-l~dLt~lDLShNq-L~EvP-~~-LE~A-Kn~iVLNLS~N~IetIPn~lf----- 146 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQ-LREVP-TN-LEYA-KNSIVLNLSYNNIETIPNSLF----- 146 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcc-cccceeeecchhh-hhhcc-hh-hhhh-cCcEEEEcccCccccCCchHH-----
Confidence 7778888777643222222334444 6667777776542 11100 00 0000 113344444444433222111
Q ss_pred ccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcC
Q 006749 309 ALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAG 388 (632)
Q Consensus 309 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~ 388 (632)
.++..|-.|+++++. +...+ ++ .+.+..|++|.|++++ +....+..+. +++
T Consensus 147 ------------------------inLtDLLfLDLS~Nr-Le~LP-PQ-~RRL~~LqtL~Ls~NP-L~hfQLrQLP-smt 197 (1255)
T KOG0444|consen 147 ------------------------INLTDLLFLDLSNNR-LEMLP-PQ-IRRLSMLQTLKLSNNP-LNHFQLRQLP-SMT 197 (1255)
T ss_pred ------------------------HhhHhHhhhccccch-hhhcC-HH-HHHHhhhhhhhcCCCh-hhHHHHhcCc-cch
Confidence 123444555555543 21111 11 1233566777776643 2112222221 233
Q ss_pred CCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCC
Q 006749 389 SLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCP 468 (632)
Q Consensus 389 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~ 468 (632)
+|+.|++++... +...+ +..+..+.+|+.++++.|. ++-.+- .+ -.++
T Consensus 198 sL~vLhms~TqR-Tl~N~----------------------------Ptsld~l~NL~dvDlS~N~-Lp~vPe-cl-y~l~ 245 (1255)
T KOG0444|consen 198 SLSVLHMSNTQR-TLDNI----------------------------PTSLDDLHNLRDVDLSENN-LPIVPE-CL-YKLR 245 (1255)
T ss_pred hhhhhhcccccc-hhhcC----------------------------CCchhhhhhhhhccccccC-CCcchH-HH-hhhh
Confidence 344444443211 10000 1112234444444444432 111110 01 1125
Q ss_pred CCcEEEeccccCCCchh--hHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhc
Q 006749 469 QLQHVDLSGLYGITDVG--IFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNN 546 (632)
Q Consensus 469 ~L~~L~l~~~~~l~~~~--~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 546 (632)
+|+.|.+++ +.++.-. ...+ .+|++|+++. ++++. ...+++. +++|+.|.+.+ +.++..++.+-...
T Consensus 246 ~LrrLNLS~-N~iteL~~~~~~W-----~~lEtLNlSr-NQLt~-LP~avcK--L~kL~kLy~n~-NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 246 NLRRLNLSG-NKITELNMTEGEW-----ENLETLNLSR-NQLTV-LPDAVCK--LTKLTKLYANN-NKLTFEGIPSGIGK 314 (1255)
T ss_pred hhheeccCc-CceeeeeccHHHH-----hhhhhhcccc-chhcc-chHHHhh--hHHHHHHHhcc-CcccccCCccchhh
Confidence 555555555 3433211 1111 1566666666 34432 1223333 66777777766 66766666554444
Q ss_pred CCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCccccccccccCCCC
Q 006749 547 CMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSIN 614 (632)
Q Consensus 547 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 614 (632)
+.+|+.+...+|.+.- ..+.++ .|+.|+.|.|+.+. + .+++.-..+.+.|+.|++.+.+++-
T Consensus 315 L~~Levf~aanN~LEl-VPEglc--RC~kL~kL~L~~Nr-L--iTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 315 LIQLEVFHAANNKLEL-VPEGLC--RCVKLQKLKLDHNR-L--ITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhHHHHhhcccccc-Cchhhh--hhHHHHHhcccccc-e--eechhhhhhcCCcceeeccCCcCcc
Confidence 6667777776665321 234444 56677777776644 3 3455555566667777777666554
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.36 E-value=2e-13 Score=140.15 Aligned_cols=245 Identities=24% Similarity=0.224 Sum_probs=136.7
Q ss_pred CCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccc
Q 006749 336 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSAS 415 (632)
Q Consensus 336 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 415 (632)
++|+.|+.+.+. +...... ..-.+|+.++++.+ .++ .++.....|.+|+.+...+.. +..... -+.. ..
T Consensus 219 ~~l~~L~a~~n~-l~~~~~~---p~p~nl~~~dis~n-~l~--~lp~wi~~~~nle~l~~n~N~-l~~lp~--ri~~-~~ 287 (1081)
T KOG0618|consen 219 PSLTALYADHNP-LTTLDVH---PVPLNLQYLDISHN-NLS--NLPEWIGACANLEALNANHNR-LVALPL--RISR-IT 287 (1081)
T ss_pred cchheeeeccCc-ceeeccc---cccccceeeecchh-hhh--cchHHHHhcccceEecccchh-HHhhHH--HHhh-hh
Confidence 566666666665 2211100 11147888888774 332 334555678888888876633 221111 1111 14
Q ss_pred cccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCC--HHH-------HHHHhh--------------cCCCCcE
Q 006749 416 KLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFG--NAS-------LAMLGK--------------LCPQLQH 472 (632)
Q Consensus 416 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~-------l~~~~~--------------~~~~L~~ 472 (632)
+|++|.+..|. +...++...+...|++|++..+.... +.. +..+.. ..+.|+.
T Consensus 288 ~L~~l~~~~ne----l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~ 363 (1081)
T KOG0618|consen 288 SLVSLSAAYNE----LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQE 363 (1081)
T ss_pred hHHHHHhhhhh----hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHH
Confidence 55555554432 22223334557777888877764211 111 111111 1233455
Q ss_pred EEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCe
Q 006749 473 VDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSY 552 (632)
Q Consensus 473 L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~ 552 (632)
|.+.+ +.++|..+..+ ...+ +||.|+|++ +.+.......+. .++.|++|.++| |.++... ..+.. |+.|++
T Consensus 364 Lylan-N~Ltd~c~p~l-~~~~-hLKVLhLsy-NrL~~fpas~~~--kle~LeeL~LSG-NkL~~Lp-~tva~-~~~L~t 434 (1081)
T KOG0618|consen 364 LYLAN-NHLTDSCFPVL-VNFK-HLKVLHLSY-NRLNSFPASKLR--KLEELEELNLSG-NKLTTLP-DTVAN-LGRLHT 434 (1081)
T ss_pred HHHhc-Ccccccchhhh-cccc-ceeeeeecc-cccccCCHHHHh--chHHhHHHhccc-chhhhhh-HHHHh-hhhhHH
Confidence 55554 55665555444 2333 788888888 344433333333 467788888888 6776655 34443 778888
Q ss_pred EeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhC-CccccccccccC
Q 006749 553 LDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLG-KTLVGLNLQNCN 611 (632)
Q Consensus 553 L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~c~ 611 (632)
|...+|++.... .+. .++.|+.++++. ++++...++. ..+ |+|++||++|..
T Consensus 435 L~ahsN~l~~fP--e~~--~l~qL~~lDlS~-N~L~~~~l~~--~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 435 LRAHSNQLLSFP--ELA--QLPQLKVLDLSC-NNLSEVTLPE--ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HhhcCCceeech--hhh--hcCcceEEeccc-chhhhhhhhh--hCCCcccceeeccCCc
Confidence 888888765533 444 678899999886 5587666655 333 789999999854
No 17
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.29 E-value=3.1e-11 Score=110.98 Aligned_cols=205 Identities=27% Similarity=0.313 Sum_probs=114.8
Q ss_pred hcCCccceeecCCCCCCC---hHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCcccccc
Q 006749 359 KGCLNLKQMCLRKCCFVS---DNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEM 435 (632)
Q Consensus 359 ~~~~~L~~L~L~~~~~l~---~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 435 (632)
..+|.|++|+|+++. +. ..++..++.++..|+.|.+.+|..-...|- .+ . ..|..|...
T Consensus 89 ~~~~~L~~ldLSDNA-~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~-~l-~---~al~~l~~~------------ 150 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNA-FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGG-RL-G---RALFELAVN------------ 150 (382)
T ss_pred hcCCceeEeeccccc-cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHH-HH-H---HHHHHHHHH------------
Confidence 345777777777753 22 245556666777788887777763222221 11 0 112222110
Q ss_pred ccCCCCCCCCeEeccCCCCC--CHHHHHHHhhcCCCCcEEEeccccCCCchhhHHH---HhhccCCccEEecCCCCCCCh
Q 006749 436 PMLSPNCSLRSLSIRNCPGF--GNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPL---LESCKAGLVKVNLSGCLNLTD 510 (632)
Q Consensus 436 ~~~~~~~~L~~L~l~~~~~l--~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~~L~~L~l~~c~~l~~ 510 (632)
......++|+.+....|+.- +...+....+.+|.|+.+.+.. +.+..+|+..+ +.+|+ +|+.|+|.. +.++.
T Consensus 151 kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~-~LevLdl~D-Ntft~ 227 (382)
T KOG1909|consen 151 KKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCP-HLEVLDLRD-NTFTL 227 (382)
T ss_pred hccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCC-cceeeeccc-chhhh
Confidence 11235677888877777532 3445666667778999999987 67766666433 33455 677777766 34544
Q ss_pred HHHHHHHhh--cCCCCCeeeccCCCCCChHHHHHHH----hcCCCcCeEeccCCCCChhHHHhhhh--hccCCccEEecc
Q 006749 511 EVVLALARL--HSETLELLNLDGCRKITDASLVAIG----NNCMFLSYLDVSKCAITDMGISALSH--AEQLNLQVLSLS 582 (632)
Q Consensus 511 ~~~~~l~~~--~~~~L~~L~l~~c~~l~~~~~~~l~----~~~~~L~~L~L~~~~i~~~~~~~l~~--~~~~~L~~L~l~ 582 (632)
.+-..++.. .++.|+.|.+++| .+.+.+...+. ...|+|+.|.+.+|.|+..+...+.. ...|.|+.|+|+
T Consensus 228 egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 228 EGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred HHHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence 444333331 2456667777776 45444443333 34566777777777666654443321 245566666666
Q ss_pred CCC
Q 006749 583 SCS 585 (632)
Q Consensus 583 ~c~ 585 (632)
+|.
T Consensus 307 gN~ 309 (382)
T KOG1909|consen 307 GNR 309 (382)
T ss_pred ccc
Confidence 654
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.18 E-value=7.3e-13 Score=130.15 Aligned_cols=173 Identities=23% Similarity=0.207 Sum_probs=107.2
Q ss_pred CCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCC--chhhHHHHhhccCCccEEecCCCCCCChHHHHHH
Q 006749 439 SPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGIT--DVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLAL 516 (632)
Q Consensus 439 ~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l 516 (632)
...++|..|++++... +-..+..-...+.||..++++. ++++ .+.+..+ ++|++|+|++ +.++...+..
T Consensus 194 PsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l-----~~LrrLNLS~-N~iteL~~~~- 264 (1255)
T KOG0444|consen 194 PSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKL-----RNLRRLNLSG-NKITELNMTE- 264 (1255)
T ss_pred ccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhh-----hhhheeccCc-CceeeeeccH-
Confidence 3455566666665432 1111111122347899999987 5554 2333333 2899999999 5776654432
Q ss_pred HhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHH
Q 006749 517 ARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALK 596 (632)
Q Consensus 517 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 596 (632)
. ...+|++|+++. ++++... ..+.+ +++|+.|.+.+|+++-.|+..-. ..+-+|+.+...++ ++ .-++.-.
T Consensus 265 ~--~W~~lEtLNlSr-NQLt~LP-~avcK-L~kL~kLy~n~NkL~FeGiPSGI-GKL~~Levf~aanN-~L--ElVPEgl 335 (1255)
T KOG0444|consen 265 G--EWENLETLNLSR-NQLTVLP-DAVCK-LTKLTKLYANNNKLTFEGIPSGI-GKLIQLEVFHAANN-KL--ELVPEGL 335 (1255)
T ss_pred H--HHhhhhhhcccc-chhccch-HHHhh-hHHHHHHHhccCcccccCCccch-hhhhhhHHHHhhcc-cc--ccCchhh
Confidence 1 246899999998 6776533 23334 78999999999987765544322 24458888888884 45 4455556
Q ss_pred HhCCccccccccccCCCCHHHHHHHHhcccccc
Q 006749 597 KLGKTLVGLNLQNCNSINSSTVARLVESLWRCD 629 (632)
Q Consensus 597 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~l~~~~ 629 (632)
..|+.|+.|.++...-++-...-.+...+...|
T Consensus 336 cRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLD 368 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLD 368 (1255)
T ss_pred hhhHHHHHhcccccceeechhhhhhcCCcceee
Confidence 678899999998855566544444444444443
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.16 E-value=8.9e-12 Score=128.36 Aligned_cols=130 Identities=21% Similarity=0.224 Sum_probs=90.6
Q ss_pred CCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccc--cCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHh
Q 006749 441 NCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGL--YGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALAR 518 (632)
Q Consensus 441 ~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 518 (632)
.+.|+.|.+.+| .+++..+..+. .+++|+.|+++++ +.+++..+..+ ..|+.|+|+| +.++... ..++.
T Consensus 358 ~~~Lq~LylanN-~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kl-----e~LeeL~LSG-NkL~~Lp-~tva~ 428 (1081)
T KOG0618|consen 358 HAALQELYLANN-HLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKL-----EELEELNLSG-NKLTTLP-DTVAN 428 (1081)
T ss_pred hHHHHHHHHhcC-cccccchhhhc-cccceeeeeecccccccCCHHHHhch-----HHhHHHhccc-chhhhhh-HHHHh
Confidence 456677777775 36776666654 4589999999984 34555555444 2789999998 5666655 33443
Q ss_pred hcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCc
Q 006749 519 LHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEV 587 (632)
Q Consensus 519 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l 587 (632)
++.|++|...+ |++.... .+.+ ++.|+.+|++.|+++...+.... .-|+|++|+++|+.+.
T Consensus 429 --~~~L~tL~ahs-N~l~~fP--e~~~-l~qL~~lDlS~N~L~~~~l~~~~--p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 429 --LGRLHTLRAHS-NQLLSFP--ELAQ-LPQLKVLDLSCNNLSEVTLPEAL--PSPNLKYLDLSGNTRL 489 (1081)
T ss_pred --hhhhHHHhhcC-Cceeech--hhhh-cCcceEEecccchhhhhhhhhhC--CCcccceeeccCCccc
Confidence 78899998877 5664433 4444 88999999999988876665544 3378999999997743
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.4e-11 Score=113.85 Aligned_cols=181 Identities=21% Similarity=0.201 Sum_probs=122.1
Q ss_pred cCCCCccchhhHHHHhcccCCCCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCC
Q 006749 128 LDGKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLE 207 (632)
Q Consensus 128 ~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 207 (632)
+.++.++-.+.-.++.....+..|+.+.|.++ .+...+...+.+.|++++.|+++..-...-..+..++..+|+|+
T Consensus 100 i~nK~vE~iGfDki~akQsn~kkL~~IsLdn~----~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le 175 (505)
T KOG3207|consen 100 ISNKQVEFIGFDKIAAKQSNLKKLREISLDNY----RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLE 175 (505)
T ss_pred hcCceeEEecHHHHHHHhhhHHhhhheeecCc----cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccch
Confidence 34455666667777777777788888888887 56666666788889999999998753233345667788899999
Q ss_pred EeecCCCCCCCHHHHHHHHhhCCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcch-hhHHHHHhhhhhhcc
Q 006749 208 KLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRD-QGISSLLSSASSVLT 286 (632)
Q Consensus 208 ~L~L~~~~~~~~~~l~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~L~ 286 (632)
.|+++.. .+....-...-..+++|+.|.++.|. ++...+..+...+|+|+.|.+..+..+.. ..-..+.+. |+
T Consensus 176 ~LNls~N-rl~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~----L~ 249 (505)
T KOG3207|consen 176 NLNLSSN-RLSNFISSNTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT----LQ 249 (505)
T ss_pred hcccccc-cccCCccccchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH----Hh
Confidence 9999873 33211111112247889999999874 56777777777799999999887642221 122233333 88
Q ss_pred cccccccccchhHHHHHhhcCcccceecccCC
Q 006749 287 RVKLQALNITDFSLAVIGHYGKALTNLVLSDL 318 (632)
Q Consensus 287 ~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~ 318 (632)
.|+|+++++.+..........+.|..|+++.+
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred hccccCCcccccccccccccccchhhhhcccc
Confidence 88888888777665555555666666666555
No 21
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.07 E-value=1e-09 Score=101.18 Aligned_cols=206 Identities=24% Similarity=0.278 Sum_probs=142.0
Q ss_pred ccccEEeccccCCCCcc-ccccccCCCCCCCCeEeccCCCCCCHHHHHHHh------------hcCCCCcEEEeccccCC
Q 006749 415 SKLKSLTLVKCMGIKDM-ATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLG------------KLCPQLQHVDLSGLYGI 481 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~------------~~~~~L~~L~l~~~~~l 481 (632)
|+|++++||++..-..- ......+..+..|++|.+.+|. ++...-..++ ..-|+|+.+...+ +.+
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrl 169 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRL 169 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-ccc
Confidence 58888888875432221 1111225678999999999985 4433322222 2347899999887 556
Q ss_pred Cchh---hHHHHhhccCCccEEecCCCCCCChHHHHHHH--hhcCCCCCeeeccCCCCCChHHHHHHHh---cCCCcCeE
Q 006749 482 TDVG---IFPLLESCKAGLVKVNLSGCLNLTDEVVLALA--RLHSETLELLNLDGCRKITDASLVAIGN---NCMFLSYL 553 (632)
Q Consensus 482 ~~~~---~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~--~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L 553 (632)
.+.+ +...++.++ .|+.+.+.. +.+...++..+. ..+++.|+.|+|.. |.++..+...++. ..++|++|
T Consensus 170 en~ga~~~A~~~~~~~-~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHP-TLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred ccccHHHHHHHHHhcc-ccceEEEec-ccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheee
Confidence 5544 445566675 899999987 355444432222 12799999999998 7888777766663 46789999
Q ss_pred eccCCCCChhHHHhhhh---hccCCccEEeccCCCCcCcchHHHHH---HhCCccccccccccCCC--CHHHHHHHHhcc
Q 006749 554 DVSKCAITDMGISALSH---AEQLNLQVLSLSSCSEVSNKSMPALK---KLGKTLVGLNLQNCNSI--NSSTVARLVESL 625 (632)
Q Consensus 554 ~L~~~~i~~~~~~~l~~---~~~~~L~~L~l~~c~~l~~~~~~~~~---~~~~~L~~L~l~~c~~l--~~~~~~~l~~~l 625 (632)
++++|.+.+.|...+.+ ...|+|+.|.+.+|. |+..+...+. .--|.|..|+|++ +.+ .+.++..++..+
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLng-N~l~e~de~i~ei~~~~ 324 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNG-NRLGEKDEGIDEIASKF 324 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCc-ccccccchhHHHHHHhc
Confidence 99999998887666653 378999999999976 7655543322 1257899999999 677 788888888877
Q ss_pred cc
Q 006749 626 WR 627 (632)
Q Consensus 626 ~~ 627 (632)
+.
T Consensus 325 ~~ 326 (382)
T KOG1909|consen 325 DT 326 (382)
T ss_pred cc
Confidence 43
No 22
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.99 E-value=1.9e-10 Score=76.19 Aligned_cols=36 Identities=33% Similarity=0.537 Sum_probs=32.1
Q ss_pred cCCCChHHHHHHHccCCCccchhhHHHHHHHHHHHHh
Q 006749 50 IDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLT 86 (632)
Q Consensus 50 ~~~LP~Eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~ 86 (632)
|..||+||+.+||+||+ ..|+.++++|||+|++++.
T Consensus 1 i~~LP~Eil~~If~~L~-~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLD-PRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHC
Confidence 57899999999999999 9999999999999999974
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.7e-10 Score=107.93 Aligned_cols=212 Identities=19% Similarity=0.163 Sum_probs=131.7
Q ss_pred cCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhc
Q 006749 333 QGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSN 412 (632)
Q Consensus 333 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 412 (632)
+.+.+|+++.+.++. +...+.....+.||+++.|+|+.+-.-.=..+..+++.+|+|+.|+++.+......+
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~------- 189 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS------- 189 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-------
Confidence 345667777777665 554444455566788888888774222224556667777777777776532110000
Q ss_pred ccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhh
Q 006749 413 SASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLES 492 (632)
Q Consensus 413 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 492 (632)
+.. -..+++|+.|.+++|. ++...+..+...||+|+.|++.++..+...... ..
T Consensus 190 ---s~~-------------------~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---~~ 243 (505)
T KOG3207|consen 190 ---SNT-------------------TLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATS---TK 243 (505)
T ss_pred ---ccc-------------------hhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecch---hh
Confidence 000 0146778888888885 778888999999999999999885433211111 11
Q ss_pred ccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHH-----HhcCCCcCeEeccCCCCCh-hHHH
Q 006749 493 CKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAI-----GNNCMFLSYLDVSKCAITD-MGIS 566 (632)
Q Consensus 493 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l-----~~~~~~L~~L~L~~~~i~~-~~~~ 566 (632)
.+..|+.|+|++.+.+......... .+|.|+.|.++.| .+++...... ...+++|+.|++..|+|.+ ..+.
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~--~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~ 320 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVG--TLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN 320 (505)
T ss_pred hhhHHhhccccCCcccccccccccc--cccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccc
Confidence 1127999999986555444334333 5899999999884 6655332222 3457899999999998754 2344
Q ss_pred hhhhhccCCccEEeccC
Q 006749 567 ALSHAEQLNLQVLSLSS 583 (632)
Q Consensus 567 ~l~~~~~~~L~~L~l~~ 583 (632)
.+. .+++|+.|.+..
T Consensus 321 ~l~--~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 321 HLR--TLENLKHLRITL 335 (505)
T ss_pred hhh--ccchhhhhhccc
Confidence 444 566777777554
No 24
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.80 E-value=6.5e-10 Score=104.06 Aligned_cols=83 Identities=22% Similarity=0.257 Sum_probs=52.9
Q ss_pred CCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCC-----------------------ChhHHHhhhhhccCCcc
Q 006749 521 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAI-----------------------TDMGISALSHAEQLNLQ 577 (632)
Q Consensus 521 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i-----------------------~~~~~~~l~~~~~~~L~ 577 (632)
+++|..|++++ +.+.+...+. . .+..|+.|+|+.|.+ .......+. .+.+|.
T Consensus 434 l~kLt~L~L~N-N~Ln~LP~e~-~-~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~--nm~nL~ 508 (565)
T KOG0472|consen 434 LQKLTFLDLSN-NLLNDLPEEM-G-SLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLK--NMRNLT 508 (565)
T ss_pred hhcceeeeccc-chhhhcchhh-h-hhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhh--hhhhcc
Confidence 56777777776 4444433222 1 245577777766642 221112222 566899
Q ss_pred EEeccCCCCcCcchHHHHHHhCCccccccccccC
Q 006749 578 VLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCN 611 (632)
Q Consensus 578 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 611 (632)
.|++.++. + ..++.+.+.+.+|++|++.|.|
T Consensus 509 tLDL~nNd-l--q~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 509 TLDLQNND-L--QQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred eeccCCCc-h--hhCChhhccccceeEEEecCCc
Confidence 99999965 6 5677778889999999999944
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.76 E-value=8.5e-10 Score=103.14 Aligned_cols=100 Identities=24% Similarity=0.166 Sum_probs=52.3
Q ss_pred cCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhC
Q 006749 520 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLG 599 (632)
Q Consensus 520 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 599 (632)
.+++|+.|++++ +.++...-..+. ....+++|.|..|++....-..+. .+..|+.|+|.++ +||......+....
T Consensus 272 ~L~~L~~lnlsn-N~i~~i~~~aFe-~~a~l~eL~L~~N~l~~v~~~~f~--~ls~L~tL~L~~N-~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 272 KLPNLRKLNLSN-NKITRIEDGAFE-GAAELQELYLTRNKLEFVSSGMFQ--GLSGLKTLSLYDN-QITTVAPGAFQTLF 346 (498)
T ss_pred hcccceEeccCC-Cccchhhhhhhc-chhhhhhhhcCcchHHHHHHHhhh--ccccceeeeecCC-eeEEEecccccccc
Confidence 366666666665 555554433332 355666666666654332222222 4446666666663 35554444444433
Q ss_pred CccccccccccCCCCHHHHHHHHhcc
Q 006749 600 KTLVGLNLQNCNSINSSTVARLVESL 625 (632)
Q Consensus 600 ~~L~~L~l~~c~~l~~~~~~~l~~~l 625 (632)
+|.+|++-..|--.+..++++.+|+
T Consensus 347 -~l~~l~l~~Np~~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 347 -SLSTLNLLSNPFNCNCRLAWLGEWL 371 (498)
T ss_pred -eeeeeehccCcccCccchHHHHHHH
Confidence 3666666554555566666666655
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.72 E-value=1.3e-08 Score=108.23 Aligned_cols=204 Identities=18% Similarity=0.164 Sum_probs=109.4
Q ss_pred CCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccc
Q 006749 336 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSAS 415 (632)
Q Consensus 336 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 415 (632)
++|++|+++++. +.. +....++|+.|+++++ .+.. +. ...++|+.|+++++. +.... ....
T Consensus 262 ~sL~~L~Ls~N~-L~~-----Lp~lp~~L~~L~Ls~N-~Lt~--LP---~~p~~L~~LdLS~N~-L~~Lp------~lp~ 322 (788)
T PRK15387 262 PGLLELSIFSNP-LTH-----LPALPSGLCKLWIFGN-QLTS--LP---VLPPGLQELSVSDNQ-LASLP------ALPS 322 (788)
T ss_pred cccceeeccCCc-hhh-----hhhchhhcCEEECcCC-cccc--cc---ccccccceeECCCCc-cccCC------CCcc
Confidence 567777777654 322 1112256778888775 3332 11 124678888887643 33221 1124
Q ss_pred cccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccC
Q 006749 416 KLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKA 495 (632)
Q Consensus 416 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 495 (632)
+|+.|.+++|. +..+. ...++|+.|++++|. ++.. ....++|+.|++++ +.++. +.. .+.
T Consensus 323 ~L~~L~Ls~N~-L~~LP------~lp~~Lq~LdLS~N~-Ls~L-----P~lp~~L~~L~Ls~-N~L~~--LP~----l~~ 382 (788)
T PRK15387 323 ELCKLWAYNNQ-LTSLP------TLPSGLQELSVSDNQ-LASL-----PTLPSELYKLWAYN-NRLTS--LPA----LPS 382 (788)
T ss_pred cccccccccCc-ccccc------ccccccceEecCCCc-cCCC-----CCCCcccceehhhc-ccccc--Ccc----ccc
Confidence 67777776643 22221 112467888887764 3221 11235677777765 33431 111 123
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 575 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 575 (632)
+|+.|+++++ .++... . ..++|+.|++++ +.++... ....+|+.|++++|+++.. ...+. .+++
T Consensus 383 ~L~~LdLs~N-~Lt~LP-----~-l~s~L~~LdLS~-N~LssIP-----~l~~~L~~L~Ls~NqLt~L-P~sl~--~L~~ 446 (788)
T PRK15387 383 GLKELIVSGN-RLTSLP-----V-LPSELKELMVSG-NRLTSLP-----MLPSGLLSLSVYRNQLTRL-PESLI--HLSS 446 (788)
T ss_pred ccceEEecCC-cccCCC-----C-cccCCCEEEccC-CcCCCCC-----cchhhhhhhhhccCccccc-ChHHh--hccC
Confidence 6788888773 444211 1 135677888877 4555321 1234677788888877642 22233 5667
Q ss_pred ccEEeccCCCCcCcchHHHH
Q 006749 576 LQVLSLSSCSEVSNKSMPAL 595 (632)
Q Consensus 576 L~~L~l~~c~~l~~~~~~~~ 595 (632)
|+.|+|++|+ ++...+..+
T Consensus 447 L~~LdLs~N~-Ls~~~~~~L 465 (788)
T PRK15387 447 ETTVNLEGNP-LSERTLQAL 465 (788)
T ss_pred CCeEECCCCC-CCchHHHHH
Confidence 8888888855 765555444
No 27
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.59 E-value=1.5e-07 Score=100.02 Aligned_cols=157 Identities=20% Similarity=0.247 Sum_probs=81.9
Q ss_pred CCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCC
Q 006749 443 SLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSE 522 (632)
Q Consensus 443 ~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 522 (632)
+|++|+|++...+.......++..+|+|++|.+.+ ..+..+.+..+..++| +|..|+++++ ++++. ..+. .++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFp-NL~sLDIS~T-nI~nl--~GIS--~Lk 195 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFP-NLRSLDISGT-NISNL--SGIS--RLK 195 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccC-ccceeecCCC-CccCc--HHHh--ccc
Confidence 34444444433344445556666666666666666 4444444556666655 6666666664 34332 1122 366
Q ss_pred CCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhH--HHhhh--hhccCCccEEeccCCCCcCcchHHHHHHh
Q 006749 523 TLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMG--ISALS--HAEQLNLQVLSLSSCSEVSNKSMPALKKL 598 (632)
Q Consensus 523 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~--~~~l~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 598 (632)
+|+.|.+.+-.-.+...+..+.. +++|+.||+|.....+.. +.... ...+|.|+.|+.++ +.++...++.+...
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~s 273 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNS 273 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHh
Confidence 66666665532223344445554 666666766665422211 11111 12466666666666 44666666655555
Q ss_pred CCcccccccc
Q 006749 599 GKTLVGLNLQ 608 (632)
Q Consensus 599 ~~~L~~L~l~ 608 (632)
-|+|+.+.+-
T Consensus 274 H~~L~~i~~~ 283 (699)
T KOG3665|consen 274 HPNLQQIAAL 283 (699)
T ss_pred CccHhhhhhh
Confidence 5555555543
No 28
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.59 E-value=9.8e-09 Score=68.55 Aligned_cols=39 Identities=36% Similarity=0.465 Sum_probs=32.7
Q ss_pred CcCCCChHHHHHHHccCCCccchhhHHHHHHHHHHHHhch
Q 006749 49 SIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSI 88 (632)
Q Consensus 49 ~~~~LP~Eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~ 88 (632)
+|.+||+|++.+||+||+ ..|+.++++|||+|++++...
T Consensus 2 ~~~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHcCC
Confidence 467899999999999999 999999999999999987543
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.55 E-value=3e-07 Score=98.68 Aligned_cols=234 Identities=14% Similarity=0.168 Sum_probs=110.8
Q ss_pred cccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhc
Q 006749 308 KALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAA 387 (632)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~ 387 (632)
+.++.|+++++. ++.... ...++|++|+++++. +...+. .+ .++|+.|+|++|. +.... ..+ .
T Consensus 199 ~~L~~L~Ls~N~-LtsLP~------~l~~nL~~L~Ls~N~-LtsLP~-~l---~~~L~~L~Ls~N~-L~~LP-~~l---~ 261 (754)
T PRK15370 199 EQITTLILDNNE-LKSLPE------NLQGNIKTLYANSNQ-LTSIPA-TL---PDTIQEMELSINR-ITELP-ERL---P 261 (754)
T ss_pred cCCcEEEecCCC-CCcCCh------hhccCCCEEECCCCc-cccCCh-hh---hccccEEECcCCc-cCcCC-hhH---h
Confidence 567777777763 221110 112467777777664 433221 11 1467777777753 32110 111 2
Q ss_pred CCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcC
Q 006749 388 GSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLC 467 (632)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~ 467 (632)
.+|+.|+++++ .++... . ..+++|+.|++++|. ++.+.. ...++|+.|++++|. +..... ...
T Consensus 262 s~L~~L~Ls~N-~L~~LP--~---~l~~sL~~L~Ls~N~-Lt~LP~-----~lp~sL~~L~Ls~N~-Lt~LP~----~l~ 324 (754)
T PRK15370 262 SALQSLDLFHN-KISCLP--E---NLPEELRYLSVYDNS-IRTLPA-----HLPSGITHLNVQSNS-LTALPE----TLP 324 (754)
T ss_pred CCCCEEECcCC-ccCccc--c---ccCCCCcEEECCCCc-cccCcc-----cchhhHHHHHhcCCc-cccCCc----ccc
Confidence 46777777653 233211 0 112467777777653 222211 112456667776654 221110 012
Q ss_pred CCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcC
Q 006749 468 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 547 (632)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 547 (632)
++|+.|+++++ .++. +. ...+++|+.|++++| +++.... . -.++|+.|+|++| .++.... .+.
T Consensus 325 ~sL~~L~Ls~N-~Lt~--LP---~~l~~sL~~L~Ls~N-~L~~LP~-~----lp~~L~~LdLs~N-~Lt~LP~-~l~--- 387 (754)
T PRK15370 325 PGLKTLEAGEN-ALTS--LP---ASLPPELQVLDVSKN-QITVLPE-T----LPPTITTLDVSRN-ALTNLPE-NLP--- 387 (754)
T ss_pred ccceeccccCC-cccc--CC---hhhcCcccEEECCCC-CCCcCCh-h----hcCCcCEEECCCC-cCCCCCH-hHH---
Confidence 56777777663 2321 11 111236777777764 3432111 1 1246777777763 4443211 111
Q ss_pred CCcCeEeccCCCCChh--HHHhhhhhccCCccEEeccCCCCcCcchHHH
Q 006749 548 MFLSYLDVSKCAITDM--GISALSHAEQLNLQVLSLSSCSEVSNKSMPA 594 (632)
Q Consensus 548 ~~L~~L~L~~~~i~~~--~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~ 594 (632)
..|+.|++++|++... .+..+. ..++.+..|++.+++ ++...+..
T Consensus 388 ~sL~~LdLs~N~L~~LP~sl~~~~-~~~~~l~~L~L~~Np-ls~~tl~~ 434 (754)
T PRK15370 388 AALQIMQASRNNLVRLPESLPHFR-GEGPQPTRIIVEYNP-FSERTIQN 434 (754)
T ss_pred HHHHHHhhccCCcccCchhHHHHh-hcCCCccEEEeeCCC-ccHHHHHH
Confidence 2466677777765431 222222 244666777777754 55444443
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.50 E-value=1.7e-07 Score=99.97 Aligned_cols=185 Identities=17% Similarity=0.141 Sum_probs=116.0
Q ss_pred CCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccc
Q 006749 336 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSAS 415 (632)
Q Consensus 336 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 415 (632)
.+|+.|+++++. +...+ ...++|+.|+++++ .+.. +..+ ...|+.|.+.++. ++..+ ....
T Consensus 282 ~~L~~L~Ls~N~-Lt~LP-----~~p~~L~~LdLS~N-~L~~--Lp~l---p~~L~~L~Ls~N~-L~~LP------~lp~ 342 (788)
T PRK15387 282 SGLCKLWIFGNQ-LTSLP-----VLPPGLQELSVSDN-QLAS--LPAL---PSELCKLWAYNNQ-LTSLP------TLPS 342 (788)
T ss_pred hhcCEEECcCCc-ccccc-----ccccccceeECCCC-cccc--CCCC---cccccccccccCc-ccccc------cccc
Confidence 467777777764 43221 12378999999886 4432 1221 2468888887754 33221 1125
Q ss_pred cccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccC
Q 006749 416 KLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKA 495 (632)
Q Consensus 416 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 495 (632)
+|+.|+++++. +..++. ..++|+.|++++|. +.. +. ...++|+.|++++ +.++. +.. .++
T Consensus 343 ~Lq~LdLS~N~-Ls~LP~------lp~~L~~L~Ls~N~-L~~--LP---~l~~~L~~LdLs~-N~Lt~--LP~----l~s 402 (788)
T PRK15387 343 GLQELSVSDNQ-LASLPT------LPSELYKLWAYNNR-LTS--LP---ALPSGLKELIVSG-NRLTS--LPV----LPS 402 (788)
T ss_pred ccceEecCCCc-cCCCCC------CCcccceehhhccc-ccc--Cc---ccccccceEEecC-CcccC--CCC----ccc
Confidence 89999999854 443321 24678889988874 332 11 2236899999988 45542 111 124
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhh
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALS 569 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~ 569 (632)
+|+.|+++++ .++.. .. ...+|+.|++++ |+++... ..+. .+++|+.|+|++|++++..+..+.
T Consensus 403 ~L~~LdLS~N-~LssI--P~----l~~~L~~L~Ls~-NqLt~LP-~sl~-~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 403 ELKELMVSGN-RLTSL--PM----LPSGLLSLSVYR-NQLTRLP-ESLI-HLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred CCCEEEccCC-cCCCC--Cc----chhhhhhhhhcc-CcccccC-hHHh-hccCCCeEECCCCCCCchHHHHHH
Confidence 8999999995 55532 11 134788999988 6777432 2333 489999999999999987666553
No 31
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.49 E-value=1.3e-07 Score=60.80 Aligned_cols=34 Identities=41% Similarity=0.642 Sum_probs=32.0
Q ss_pred CChHHHHHHHccCCCccchhhHHHHHHHHHHHHhc
Q 006749 53 LPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTS 87 (632)
Q Consensus 53 LP~Eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 87 (632)
||+|++..||.||+ ..|+.++++|||+|+.++..
T Consensus 1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999 99999999999999998743
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.47 E-value=5.2e-07 Score=95.89 Aligned_cols=115 Identities=21% Similarity=0.220 Sum_probs=83.6
Q ss_pred ccCCCCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHH
Q 006749 145 TSGHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIA 224 (632)
Q Consensus 145 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ 224 (632)
..+..+|++|++++.. .+...|...++..+|.|++|.+.+. .+...++..+..+||+|..||++++ ++++ +..
T Consensus 118 ~~sr~nL~~LdI~G~~---~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~n--l~G 190 (699)
T KOG3665|consen 118 EESRQNLQHLDISGSE---LFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISN--LSG 190 (699)
T ss_pred HHHHHhhhhcCccccc---hhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccC--cHH
Confidence 3344788888888754 5677788888888888888888875 4555557777778888888888884 5654 222
Q ss_pred HHhhCCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCC
Q 006749 225 IAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPL 268 (632)
Q Consensus 225 l~~~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 268 (632)
..++++|++|.+.+-...+...+..+.. +.+|+.|+++....
T Consensus 191 -IS~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 191 -ISRLKNLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKN 232 (699)
T ss_pred -HhccccHHHHhccCCCCCchhhHHHHhc-ccCCCeeecccccc
Confidence 2357888888888755445566777777 88888888886543
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.34 E-value=4.1e-07 Score=78.80 Aligned_cols=105 Identities=27% Similarity=0.237 Sum_probs=43.8
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChh-HHHhhhhhccC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDM-GISALSHAEQL 574 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~ 574 (632)
+|+.|+++++ .++.. ..+. .+++|+.|++++ |.+++.+- .+...+|+|++|++++|+|.+. .+..+. .+|
T Consensus 43 ~L~~L~Ls~N-~I~~l--~~l~--~L~~L~~L~L~~-N~I~~i~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~--~l~ 113 (175)
T PF14580_consen 43 KLEVLDLSNN-QITKL--EGLP--GLPRLKTLDLSN-NRISSISE-GLDKNLPNLQELYLSNNKISDLNELEPLS--SLP 113 (175)
T ss_dssp T--EEE-TTS---S----TT------TT--EEE--S-S---S-CH-HHHHH-TT--EEE-TTS---SCCCCGGGG--G-T
T ss_pred CCCEEECCCC-CCccc--cCcc--ChhhhhhcccCC-CCCCcccc-chHHhCCcCCEEECcCCcCCChHHhHHHH--cCC
Confidence 5666666653 33321 1222 367888888887 67776432 2334578888888888877652 344555 788
Q ss_pred CccEEeccCCCCcCcchH--HHHHHhCCcccccccccc
Q 006749 575 NLQVLSLSSCSEVSNKSM--PALKKLGKTLVGLNLQNC 610 (632)
Q Consensus 575 ~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~l~~c 610 (632)
+|+.|++.+|| +++..- ..+...+|+|+.||-...
T Consensus 114 ~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 114 KLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp T--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 88888888877 443322 335566778888876553
No 34
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=7.9e-07 Score=76.11 Aligned_cols=104 Identities=24% Similarity=0.379 Sum_probs=56.6
Q ss_pred CCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCC-CChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCcc
Q 006749 524 LELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCA-ITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTL 602 (632)
Q Consensus 524 L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 602 (632)
++.++-++ ..|...++..+.. ++.++.|.+.+|. +.|.+++.+. .-.++|+.|+|++|++||+.++..+..+. +|
T Consensus 103 IeaVDAsd-s~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~GL~~L~~lk-nL 178 (221)
T KOG3864|consen 103 IEAVDASD-SSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGGLACLLKLK-NL 178 (221)
T ss_pred EEEEecCC-chHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhHHHHHHHhh-hh
Confidence 34444444 2444444444443 4555555555542 4444455544 35556666666666666666666655433 46
Q ss_pred ccccccccCCCCH--HHHHHHHhcccccccC
Q 006749 603 VGLNLQNCNSINS--STVARLVESLWRCDIL 631 (632)
Q Consensus 603 ~~L~l~~c~~l~~--~~~~~l~~~l~~~~~~ 631 (632)
+.|.+.+-+.+.. .....+.+.+|.|||+
T Consensus 179 r~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 179 RRLHLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred HHHHhcCchhhhchHHHHHHHHHhCccccee
Confidence 6666666444432 2345577778888875
No 35
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.28 E-value=2.5e-08 Score=93.71 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=37.0
Q ss_pred CCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCC
Q 006749 523 TLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 585 (632)
Q Consensus 523 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 585 (632)
.++.+-.+. +++.......+ .++.+|..|+|.+|.+... ...+. .|.+|++|.++|++
T Consensus 482 ~lEtllas~-nqi~~vd~~~l-~nm~nL~tLDL~nNdlq~I-Pp~Lg--nmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 482 TLETLLASN-NQIGSVDPSGL-KNMRNLTTLDLQNNDLQQI-PPILG--NMTNLRHLELDGNP 539 (565)
T ss_pred HHHHHHhcc-ccccccChHHh-hhhhhcceeccCCCchhhC-Chhhc--cccceeEEEecCCc
Confidence 344444443 45544443333 3488999999999975431 22233 67799999999977
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.26 E-value=3.4e-06 Score=90.71 Aligned_cols=130 Identities=18% Similarity=0.193 Sum_probs=73.0
Q ss_pred ccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhcc
Q 006749 415 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 494 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 494 (632)
++|+.|++++|. +..+.. ...++|+.|++++|. ++... .. .+++|+.|+++++ .++. +. ...+
T Consensus 304 ~sL~~L~Ls~N~-Lt~LP~-----~l~~sL~~L~Ls~N~-Lt~LP-~~---l~~sL~~L~Ls~N-~L~~--LP---~~lp 366 (754)
T PRK15370 304 SGITHLNVQSNS-LTALPE-----TLPPGLKTLEAGENA-LTSLP-AS---LPPELQVLDVSKN-QITV--LP---ETLP 366 (754)
T ss_pred hhHHHHHhcCCc-cccCCc-----cccccceeccccCCc-cccCC-hh---hcCcccEEECCCC-CCCc--CC---hhhc
Confidence 356666666643 222211 123577777777764 22211 11 1367888888873 3431 11 1123
Q ss_pred CCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChH--HHHHHHhcCCCcCeEeccCCCCChhHHHhh
Q 006749 495 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDA--SLVAIGNNCMFLSYLDVSKCAITDMGISAL 568 (632)
Q Consensus 495 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~--~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l 568 (632)
++|+.|++++| .++.... .+. +.|+.|++++ +++... .+..+...++++..|++.+|+++...+..+
T Consensus 367 ~~L~~LdLs~N-~Lt~LP~-~l~----~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 367 PTITTLDVSRN-ALTNLPE-NLP----AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred CCcCEEECCCC-cCCCCCH-hHH----HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHH
Confidence 47888888885 4543211 111 3688888887 466532 234444556888899999998886655544
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.21 E-value=1.2e-06 Score=82.49 Aligned_cols=97 Identities=24% Similarity=0.128 Sum_probs=69.2
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 575 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 575 (632)
+|++|++++ +.++...-.++.. +..++.|.+.. +++....- .+++++..|+.|+|++|+|+-.....+. ...+
T Consensus 275 ~L~~lnlsn-N~i~~i~~~aFe~--~a~l~eL~L~~-N~l~~v~~-~~f~~ls~L~tL~L~~N~it~~~~~aF~--~~~~ 347 (498)
T KOG4237|consen 275 NLRKLNLSN-NKITRIEDGAFEG--AAELQELYLTR-NKLEFVSS-GMFQGLSGLKTLSLYDNQITTVAPGAFQ--TLFS 347 (498)
T ss_pred cceEeccCC-Cccchhhhhhhcc--hhhhhhhhcCc-chHHHHHH-HhhhccccceeeeecCCeeEEEeccccc--ccce
Confidence 777777776 4666655555553 77899999987 67765443 3445688999999999988765555544 6668
Q ss_pred ccEEeccCCCCcCcchHHHHHHhC
Q 006749 576 LQVLSLSSCSEVSNKSMPALKKLG 599 (632)
Q Consensus 576 L~~L~l~~c~~l~~~~~~~~~~~~ 599 (632)
|.+|.+-.++.-.+..+.|+....
T Consensus 348 l~~l~l~~Np~~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 348 LSTLNLLSNPFNCNCRLAWLGEWL 371 (498)
T ss_pred eeeeehccCcccCccchHHHHHHH
Confidence 899999887877777777766543
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.18 E-value=1.1e-06 Score=76.23 Aligned_cols=131 Identities=23% Similarity=0.261 Sum_probs=49.1
Q ss_pred CCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCC-chhhHHHHhhccCCccEEecCCCCCCChHHHHHHHh
Q 006749 440 PNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGIT-DVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALAR 518 (632)
Q Consensus 440 ~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 518 (632)
++.++++|+++++. ++ .++.++..+.+|+.|++++ +.++ -+++..+ + .|+.|++++ +.++...- .+..
T Consensus 17 n~~~~~~L~L~~n~-I~--~Ie~L~~~l~~L~~L~Ls~-N~I~~l~~l~~L----~-~L~~L~L~~-N~I~~i~~-~l~~ 85 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-IS--TIENLGATLDKLEVLDLSN-NQITKLEGLPGL----P-RLKTLDLSN-NRISSISE-GLDK 85 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TT-S--S--TT--------T-T--EEE--S-S---S-CH-HHHH
T ss_pred cccccccccccccc-cc--cccchhhhhcCCCEEECCC-CCCccccCccCh----h-hhhhcccCC-CCCCcccc-chHH
Confidence 45567777777764 22 2334444457888888887 4443 2333332 2 899999988 56665422 2222
Q ss_pred hcCCCCCeeeccCCCCCChHH-HHHHHhcCCCcCeEeccCCCCChhH-HHhhhhhccCCccEEeccCC
Q 006749 519 LHSETLELLNLDGCRKITDAS-LVAIGNNCMFLSYLDVSKCAITDMG-ISALSHAEQLNLQVLSLSSC 584 (632)
Q Consensus 519 ~~~~~L~~L~l~~c~~l~~~~-~~~l~~~~~~L~~L~L~~~~i~~~~-~~~l~~~~~~~L~~L~l~~c 584 (632)
.+|+|++|.+++ |++.+.. +..+ ..+++|+.|+|.+|++++.. .....-..+|+|+.|+-...
T Consensus 86 -~lp~L~~L~L~~-N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 86 -NLPNLQELYLSN-NKISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -H-TT--EEE-TT-S---SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred -hCCcCCEEECcC-CcCCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 479999999998 7776632 2333 45999999999999987642 22222248999999988763
No 39
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=5e-06 Score=75.49 Aligned_cols=192 Identities=17% Similarity=0.117 Sum_probs=97.8
Q ss_pred HHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHH
Q 006749 381 VAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASL 460 (632)
Q Consensus 381 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l 460 (632)
..+...++.++.+++.++. +++..-...+...+|.|+.|+++.++.-.++...+ ....+|+.|.+.+. .++....
T Consensus 64 ~~~~~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT-~L~w~~~ 138 (418)
T KOG2982|consen 64 MLFGSSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGT-GLSWTQS 138 (418)
T ss_pred HHHHHHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCC-CCChhhh
Confidence 3444445555555555522 33332222223333555666555544333332221 13556777777663 4666666
Q ss_pred HHHhhcCCCCcEEEecccc----CCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCC
Q 006749 461 AMLGKLCPQLQHVDLSGLY----GITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKIT 536 (632)
Q Consensus 461 ~~~~~~~~~L~~L~l~~~~----~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 536 (632)
..+...+|.+++|.++.++ ++.++..... .+.+++|...+|....-.....+.. .+|++..+-+..|+ +.
T Consensus 139 ~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~----s~~v~tlh~~~c~~~~w~~~~~l~r-~Fpnv~sv~v~e~P-lK 212 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW----STEVLTLHQLPCLEQLWLNKNKLSR-IFPNVNSVFVCEGP-LK 212 (418)
T ss_pred hhhhhcchhhhhhhhccchhhhhcccccccccc----chhhhhhhcCCcHHHHHHHHHhHHh-hcccchheeeecCc-cc
Confidence 6666667777777776521 1222222221 1145666666654333333333444 56777777776653 22
Q ss_pred hHHHHHHHhcCCCcCeEeccCCCCCh-hHHHhhhhhccCCccEEeccCCC
Q 006749 537 DASLVAIGNNCMFLSYLDVSKCAITD-MGISALSHAEQLNLQVLSLSSCS 585 (632)
Q Consensus 537 ~~~~~~l~~~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~~L~~L~l~~c~ 585 (632)
+...+.-.+..|.+--|.|+.++|.+ .++..+. .++.|+-|.+...|
T Consensus 213 ~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln--~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 213 TESSEKGSEPFPSLSCLNLGANNIDSWASVDALN--GFPQLVDLRVSENP 260 (418)
T ss_pred chhhcccCCCCCcchhhhhcccccccHHHHHHHc--CCchhheeeccCCc
Confidence 22223333446666666676666655 3455555 66677777766655
No 40
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.07 E-value=7.4e-05 Score=67.19 Aligned_cols=93 Identities=20% Similarity=0.248 Sum_probs=43.8
Q ss_pred CCCCCeeeccCCCCCChHHHHHHHhc---CCCcCeEeccCCCCChhHHHhhh----hhccCCccEEeccCCCC----cCc
Q 006749 521 SETLELLNLDGCRKITDASLVAIGNN---CMFLSYLDVSKCAITDMGISALS----HAEQLNLQVLSLSSCSE----VSN 589 (632)
Q Consensus 521 ~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~L~~L~L~~~~i~~~~~~~l~----~~~~~~L~~L~l~~c~~----l~~ 589 (632)
+.+|+.|+|.. |.++..+...+... -+.|++|.+..|-++..|...+. ....|+|..|...++.. |-+
T Consensus 213 ~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~ 291 (388)
T COG5238 213 SHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILD 291 (388)
T ss_pred hCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeee
Confidence 45666666665 45555444444321 23456666666655554443332 12455666666555331 111
Q ss_pred chHHH-HHHhCCccccccccccCCCCH
Q 006749 590 KSMPA-LKKLGKTLVGLNLQNCNSINS 615 (632)
Q Consensus 590 ~~~~~-~~~~~~~L~~L~l~~c~~l~~ 615 (632)
.+++. .....|-|..|.+.+ +.+.+
T Consensus 292 ~~l~~~e~~~~p~L~~le~ng-Nr~~E 317 (388)
T COG5238 292 ISLNEFEQDAVPLLVDLERNG-NRIKE 317 (388)
T ss_pred echhhhhhcccHHHHHHHHcc-Ccchh
Confidence 12222 222345555555555 45543
No 41
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.06 E-value=2.6e-05 Score=69.99 Aligned_cols=165 Identities=21% Similarity=0.185 Sum_probs=99.1
Q ss_pred CCCCCCeEeccCCCCC--CHHHHHHHhhcCCCCcEEEeccccCCCch-------hhHHHHhh----ccCCccEEecCCCC
Q 006749 440 PNCSLRSLSIRNCPGF--GNASLAMLGKLCPQLQHVDLSGLYGITDV-------GIFPLLES----CKAGLVKVNLSGCL 506 (632)
Q Consensus 440 ~~~~L~~L~l~~~~~l--~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-------~~~~l~~~----~~~~L~~L~l~~c~ 506 (632)
.||+|+..++++|..- ....+..+......|++|.+++ +.+... .+..+..+ -.|.|+.+.... +
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~N-nGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-N 167 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNN-NGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-N 167 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeec-CCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-c
Confidence 4555555555554211 1223444444457788888877 344321 12222222 114788877765 2
Q ss_pred CCChHH---HHHHHhhcCCCCCeeeccCCCCCChHHHHHHH----hcCCCcCeEeccCCCCChhHHHhhhhh--ccCCcc
Q 006749 507 NLTDEV---VLALARLHSETLELLNLDGCRKITDASLVAIG----NNCMFLSYLDVSKCAITDMGISALSHA--EQLNLQ 577 (632)
Q Consensus 507 ~l~~~~---~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~----~~~~~L~~L~L~~~~i~~~~~~~l~~~--~~~~L~ 577 (632)
.+...+ .......+ .+|+.+.+.+ |.|...++..+. ..+.+|+.|+|..|.++-.+-..++.. ..+.|+
T Consensus 168 Rlengs~~~~a~~l~sh-~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 168 RLENGSKELSAALLESH-ENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred hhccCcHHHHHHHHHhh-cCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 333322 22222312 5889999988 788888776664 568999999999998888776665532 455689
Q ss_pred EEeccCCCCcCcchHHHHHHh-----CCccccccccc
Q 006749 578 VLSLSSCSEVSNKSMPALKKL-----GKTLVGLNLQN 609 (632)
Q Consensus 578 ~L~l~~c~~l~~~~~~~~~~~-----~~~L~~L~l~~ 609 (632)
.|.+.+|- ++..+...+... .|+|..|...+
T Consensus 246 EL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 246 ELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred hccccchh-hccccHHHHHHHhhhhcCCCccccccch
Confidence 99999997 665666554433 46777777666
No 42
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=1.3e-05 Score=68.93 Aligned_cols=73 Identities=25% Similarity=0.407 Sum_probs=68.2
Q ss_pred CcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCccccccccccCCCCHHHHHHHHh
Q 006749 549 FLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVE 623 (632)
Q Consensus 549 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 623 (632)
.++.++-+++.|...|++.+- .++.++.|.+.+|..+.|-+++.+....++|+.|+|++|++||+.|+..+.+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~--~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLR--DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCchHHHHHHHHHh--ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH
Confidence 478889999999999999998 8999999999999999999999999999999999999999999999988754
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.77 E-value=6.7e-06 Score=74.68 Aligned_cols=127 Identities=22% Similarity=0.247 Sum_probs=69.8
Q ss_pred CCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCch-hhHHHHhhccCCccEEecCCCCCCChHHHHHHHh
Q 006749 440 PNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDV-GIFPLLESCKAGLVKVNLSGCLNLTDEVVLALAR 518 (632)
Q Consensus 440 ~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 518 (632)
..+.|+++++++|. ++ .+..-.+..|.++.|+++. +.+... .+..+ + +|..|++++ +.++.. ..+..
T Consensus 282 TWq~LtelDLS~N~-I~--~iDESvKL~Pkir~L~lS~-N~i~~v~nLa~L----~-~L~~LDLS~-N~Ls~~--~Gwh~ 349 (490)
T KOG1259|consen 282 TWQELTELDLSGNL-IT--QIDESVKLAPKLRRLILSQ-NRIRTVQNLAEL----P-QLQLLDLSG-NLLAEC--VGWHL 349 (490)
T ss_pred hHhhhhhccccccc-hh--hhhhhhhhccceeEEeccc-cceeeehhhhhc----c-cceEeeccc-chhHhh--hhhHh
Confidence 45667777777763 22 1222223347777777776 444322 22222 2 777777777 233321 11222
Q ss_pred hcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChh-HHHhhhhhccCCccEEeccCCC
Q 006749 519 LHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDM-GISALSHAEQLNLQVLSLSSCS 585 (632)
Q Consensus 519 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~~L~~L~l~~c~ 585 (632)
.+-+++.|.+++ |.+.+. .-+.+ +-+|..|++++|+|... .+..+. .+|.|+.+.+.+++
T Consensus 350 -KLGNIKtL~La~-N~iE~L--SGL~K-LYSLvnLDl~~N~Ie~ldeV~~IG--~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 350 -KLGNIKTLKLAQ-NKIETL--SGLRK-LYSLVNLDLSSNQIEELDEVNHIG--NLPCLETLRLTGNP 410 (490)
T ss_pred -hhcCEeeeehhh-hhHhhh--hhhHh-hhhheeccccccchhhHHHhcccc--cccHHHHHhhcCCC
Confidence 356777777776 454331 11222 45677777877777653 344444 77777777777766
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.76 E-value=4.9e-06 Score=75.53 Aligned_cols=128 Identities=23% Similarity=0.213 Sum_probs=83.7
Q ss_pred ccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCC-chhhHHHHhhc
Q 006749 415 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGIT-DVGIFPLLESC 493 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~ 493 (632)
..|++++++++. +..+. ....-.|.++.|+++.|.-..-..+.. +++|++|++++ +.++ -+|... ..
T Consensus 284 q~LtelDLS~N~-I~~iD---ESvKL~Pkir~L~lS~N~i~~v~nLa~----L~~L~~LDLS~-N~Ls~~~Gwh~---KL 351 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQID---ESVKLAPKLRRLILSQNRIRTVQNLAE----LPQLQLLDLSG-NLLAECVGWHL---KL 351 (490)
T ss_pred hhhhhccccccc-hhhhh---hhhhhccceeEEeccccceeeehhhhh----cccceEeeccc-chhHhhhhhHh---hh
Confidence 678899998843 33332 234568999999999986544333333 49999999998 4443 222221 12
Q ss_pred cCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCC
Q 006749 494 KAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAIT 561 (632)
Q Consensus 494 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~ 561 (632)
. ++++|.+++ +.+.+ +..+. .+-+|..|++.+ |++....-..-...+|.|+.+.|.+|++.
T Consensus 352 G-NIKtL~La~-N~iE~--LSGL~--KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 352 G-NIKTLKLAQ-NKIET--LSGLR--KLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred c-CEeeeehhh-hhHhh--hhhhH--hhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 2 889999987 23322 23233 366899999998 67765433332345999999999999754
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.72 E-value=0.0001 Score=80.99 Aligned_cols=111 Identities=23% Similarity=0.186 Sum_probs=64.8
Q ss_pred CCCCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHH
Q 006749 147 GHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIA 226 (632)
Q Consensus 147 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~ 226 (632)
.++.+++|-+..+.. .+...... +...+|.|+.|+++++.... .++...+.+-+|++|++++ ..+.. ++.-.
T Consensus 543 ~~~~L~tLll~~n~~--~l~~is~~-ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~-t~I~~--LP~~l 614 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSD--WLLEISGE-FFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSD-TGISH--LPSGL 614 (889)
T ss_pred CCCccceEEEeecch--hhhhcCHH-HHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccC-CCccc--cchHH
Confidence 345677777665421 01111111 22467888888888754333 3444455677888888887 45552 55555
Q ss_pred hhCCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCC
Q 006749 227 ENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCP 267 (632)
Q Consensus 227 ~~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 267 (632)
.+++.|.+|++......... ..+...+++|++|.+....
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHHHhhheeccccccccccc--cchhhhcccccEEEeeccc
Confidence 66778888888764432221 3333347788888876543
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.62 E-value=5.8e-05 Score=82.85 Aligned_cols=64 Identities=22% Similarity=0.172 Sum_probs=37.5
Q ss_pred hCCCCCEeecCCCCCCCHHHHHHHHhhCCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCC
Q 006749 202 ECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCP 267 (632)
Q Consensus 202 ~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 267 (632)
.+++|++|-+.....--...-..++..+|.|++|++++|.... .-+..++. +-+|++|++++..
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~-Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGE-LVHLRYLDLSDTG 606 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-cCChHHhh-hhhhhcccccCCC
Confidence 5667888877763210111122445568888888888755432 22333444 6778888877643
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.00018 Score=65.75 Aligned_cols=183 Identities=18% Similarity=0.087 Sum_probs=106.6
Q ss_pred cccccccccccchhH-HHHHhhcCcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCc
Q 006749 285 LTRVKLQALNITDFS-LAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLN 363 (632)
Q Consensus 285 L~~L~L~~~~i~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 363 (632)
++.++|.++.+++-. +..+.+..|.|+.|+++.+.--++.+-.. ....+|+.|-+.+.. +.......+...+|.
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp----~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP----LPLKNLRVLVLNGTG-LSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc----ccccceEEEEEcCCC-CChhhhhhhhhcchh
Confidence 555555555555433 55556666777777776664333333221 124688888887765 666666666677788
Q ss_pred cceeecCCCC----CCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCC
Q 006749 364 LKQMCLRKCC----FVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLS 439 (632)
Q Consensus 364 L~~L~L~~~~----~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 439 (632)
++.|.++.+. .+.+.....+ -+.+++|++..|....+..... +...+|++..+-+..|+.-+...... ..
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~---s~~v~tlh~~~c~~~~w~~~~~-l~r~Fpnv~sv~v~e~PlK~~s~ek~--se 221 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDW---STEVLTLHQLPCLEQLWLNKNK-LSRIFPNVNSVFVCEGPLKTESSEKG--SE 221 (418)
T ss_pred hhhhhhccchhhhhcccccccccc---chhhhhhhcCCcHHHHHHHHHh-HHhhcccchheeeecCcccchhhccc--CC
Confidence 8888887652 1222222222 2466777777765333332222 23446888888888876443322211 23
Q ss_pred CCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEecccc
Q 006749 440 PNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLY 479 (632)
Q Consensus 440 ~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~ 479 (632)
.+|.+-.|+++.+.--+..++..+. .+|.|..|.+.+.+
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln-~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALN-GFPQLVDLRVSENP 260 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHc-CCchhheeeccCCc
Confidence 4666667777776533445556655 45899999998743
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.39 E-value=3.3e-05 Score=54.48 Aligned_cols=58 Identities=33% Similarity=0.350 Sum_probs=25.4
Q ss_pred CCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCC
Q 006749 523 TLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSC 584 (632)
Q Consensus 523 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c 584 (632)
+|+.|++++| +++......+ ..+++|++|++++|.++......+. .+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f-~~l~~L~~L~l~~N~l~~i~~~~f~--~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSF-SNLPNLETLDLSNNNLTSIPPDAFS--NLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTT-TTGTTESEEEETSSSESEEETTTTT--TSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHH-cCCCCCCEeEccCCccCccCHHHHc--CCCCCCEEeCcCC
Confidence 4455555542 4433222111 2345555555555554433333333 4455555555553
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.18 E-value=0.0001 Score=51.91 Aligned_cols=60 Identities=28% Similarity=0.239 Sum_probs=46.0
Q ss_pred CCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCccccccccccC
Q 006749 548 MFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCN 611 (632)
Q Consensus 548 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 611 (632)
|+|++|++++|+++......+. .+++|++|++++|. ++...... ...+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~--~l~~L~~L~l~~N~-l~~i~~~~-f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFS--NLPNLETLDLSNNN-LTSIPPDA-FSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTT--TGTTESEEEETSSS-ESEEETTT-TTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHc--CCCCCCEeEccCCc-cCccCHHH-HcCCCCCCEEeCcCCc
Confidence 6899999999998775555555 78899999999855 76544433 4456679999999953
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.14 E-value=0.0012 Score=64.93 Aligned_cols=120 Identities=19% Similarity=0.325 Sum_probs=56.9
Q ss_pred cCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCC
Q 006749 360 GCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLS 439 (632)
Q Consensus 360 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 439 (632)
.|++++.|++++| .+.. ++. -.++|++|.+.+|..++...- . .+++|++|.+++|..+..+
T Consensus 50 ~~~~l~~L~Is~c-~L~s--LP~---LP~sLtsL~Lsnc~nLtsLP~--~---LP~nLe~L~Ls~Cs~L~sL-------- 110 (426)
T PRK15386 50 EARASGRLYIKDC-DIES--LPV---LPNELTEITIENCNNLTTLPG--S---IPEGLEKLTVCHCPEISGL-------- 110 (426)
T ss_pred HhcCCCEEEeCCC-CCcc--cCC---CCCCCcEEEccCCCCcccCCc--h---hhhhhhheEccCccccccc--------
Confidence 3577778888776 3322 111 124577777777665433221 0 1256777777766544322
Q ss_pred CCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCC
Q 006749 440 PNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNL 508 (632)
Q Consensus 440 ~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l 508 (632)
.++|+.|++..+.. . .+...-++|+.|.+.+........+. ...|++|++|.+++|..+
T Consensus 111 -P~sLe~L~L~~n~~-~-----~L~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 111 -PESVRSLEIKGSAT-D-----SIKNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNI 169 (426)
T ss_pred -ccccceEEeCCCCC-c-----ccccCcchHhheeccccccccccccc---cccCCcccEEEecCCCcc
Confidence 34566666653221 1 01112245666665432211111111 123346666666666533
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.04 E-value=0.0011 Score=65.13 Aligned_cols=139 Identities=17% Similarity=0.298 Sum_probs=79.6
Q ss_pred HhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHh
Q 006749 385 KAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLG 464 (632)
Q Consensus 385 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~ 464 (632)
..|++++.|++++| .++... ...++|++|.+++|..+..+.. ...++|++|.+++|..+.
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP------~LP~sLtsL~Lsnc~nLtsLP~-----~LP~nLe~L~Ls~Cs~L~-------- 108 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLP------VLPNELTEITIENCNNLTTLPG-----SIPEGLEKLTVCHCPEIS-------- 108 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccC------CCCCCCcEEEccCCCCcccCCc-----hhhhhhhheEccCccccc--------
Confidence 35788999999988 344433 1235799999998887755421 124678888888886543
Q ss_pred hcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHH
Q 006749 465 KLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIG 544 (632)
Q Consensus 465 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 544 (632)
...++|+.|++.+ ..... +...|++|+.|.+.++........... -.++|+.|.+++|..+... .
T Consensus 109 sLP~sLe~L~L~~-n~~~~------L~~LPssLk~L~I~~~n~~~~~~lp~~---LPsSLk~L~Is~c~~i~LP--~--- 173 (426)
T PRK15386 109 GLPESVRSLEIKG-SATDS------IKNVPNGLTSLSINSYNPENQARIDNL---ISPSLKTLSLTGCSNIILP--E--- 173 (426)
T ss_pred ccccccceEEeCC-CCCcc------cccCcchHhheeccccccccccccccc---cCCcccEEEecCCCcccCc--c---
Confidence 1225788888764 22221 223455788887754321111111100 1257888888887544211 0
Q ss_pred hcCCCcCeEeccCC
Q 006749 545 NNCMFLSYLDVSKC 558 (632)
Q Consensus 545 ~~~~~L~~L~L~~~ 558 (632)
..-.+|+.|.++.+
T Consensus 174 ~LP~SLk~L~ls~n 187 (426)
T PRK15386 174 KLPESLQSITLHIE 187 (426)
T ss_pred cccccCcEEEeccc
Confidence 11246777777665
No 52
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.02 E-value=1.3e-05 Score=66.58 Aligned_cols=148 Identities=17% Similarity=0.157 Sum_probs=70.0
Q ss_pred ccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCC--CchhhHHHHhh
Q 006749 415 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGI--TDVGIFPLLES 492 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l--~~~~~~~l~~~ 492 (632)
.+++.|.++++. +...++.+..+.+|+.|+++++. +.+. ..-...+|+|+.|.++- +.+ ...|+.++
T Consensus 33 s~ITrLtLSHNK----l~~vppnia~l~nlevln~~nnq-ie~l--p~~issl~klr~lnvgm-nrl~~lprgfgs~--- 101 (264)
T KOG0617|consen 33 SNITRLTLSHNK----LTVVPPNIAELKNLEVLNLSNNQ-IEEL--PTSISSLPKLRILNVGM-NRLNILPRGFGSF--- 101 (264)
T ss_pred hhhhhhhcccCc----eeecCCcHHHhhhhhhhhcccch-hhhc--Chhhhhchhhhheecch-hhhhcCccccCCC---
Confidence 455566666532 22223344556677777776652 2221 11122346666666642 211 22333322
Q ss_pred ccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCCh--hHHHhhhh
Q 006749 493 CKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD--MGISALSH 570 (632)
Q Consensus 493 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~--~~~~~l~~ 570 (632)
| .|+.|++++ +++....+..-.. .+..|+.|.++. +...-.. ..+ ..+++|+.|.+..|.+.. ..+..+.
T Consensus 102 -p-~levldlty-nnl~e~~lpgnff-~m~tlralyl~d-ndfe~lp-~dv-g~lt~lqil~lrdndll~lpkeig~lt- 173 (264)
T KOG0617|consen 102 -P-ALEVLDLTY-NNLNENSLPGNFF-YMTTLRALYLGD-NDFEILP-PDV-GKLTNLQILSLRDNDLLSLPKEIGDLT- 173 (264)
T ss_pred -c-hhhhhhccc-cccccccCCcchh-HHHHHHHHHhcC-CCcccCC-hhh-hhhcceeEEeeccCchhhCcHHHHHHH-
Confidence 2 666666666 3444433322111 245566666655 2321111 111 236677777777665432 2333334
Q ss_pred hccCCccEEeccCCC
Q 006749 571 AEQLNLQVLSLSSCS 585 (632)
Q Consensus 571 ~~~~~L~~L~l~~c~ 585 (632)
+|+.|++.++.
T Consensus 174 ----~lrelhiqgnr 184 (264)
T KOG0617|consen 174 ----RLRELHIQGNR 184 (264)
T ss_pred ----HHHHHhcccce
Confidence 67777777743
No 53
>PLN03150 hypothetical protein; Provisional
Probab=96.93 E-value=0.0015 Score=70.20 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=26.5
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCCh
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD 562 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 562 (632)
+|+.|+|+++ .+.......+. .+++|+.|++++ +.++......+. .+++|+.|+|++|+++.
T Consensus 443 ~L~~L~Ls~N-~l~g~iP~~~~--~l~~L~~LdLs~-N~lsg~iP~~l~-~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 443 HLQSINLSGN-SIRGNIPPSLG--SITSLEVLDLSY-NSFNGSIPESLG-QLTSLRILNLNGNSLSG 504 (623)
T ss_pred CCCEEECCCC-cccCcCChHHh--CCCCCCEEECCC-CCCCCCCchHHh-cCCCCCEEECcCCcccc
Confidence 4555555552 33322222222 245555555554 344332222222 25555555555554443
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.83 E-value=0.00012 Score=74.95 Aligned_cols=104 Identities=24% Similarity=0.244 Sum_probs=50.5
Q ss_pred CCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHH-hcCCCCeEecccCCCcchhhHHHHHhcc
Q 006749 335 LQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSK-AAGSLEILQLEECNRVSQSGILGVVSNS 413 (632)
Q Consensus 335 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 413 (632)
++.|++|+++.+. +.+.. ...+|+.|++|+|+.+. +.. +..+.. +|. |..|.+.++.--+-.|+..+
T Consensus 186 l~ale~LnLshNk-~~~v~---~Lr~l~~LkhLDlsyN~-L~~--vp~l~~~gc~-L~~L~lrnN~l~tL~gie~L---- 253 (1096)
T KOG1859|consen 186 LPALESLNLSHNK-FTKVD---NLRRLPKLKHLDLSYNC-LRH--VPQLSMVGCK-LQLLNLRNNALTTLRGIENL---- 253 (1096)
T ss_pred HHHhhhhccchhh-hhhhH---HHHhcccccccccccch-hcc--ccccchhhhh-heeeeecccHHHhhhhHHhh----
Confidence 4566666666655 33322 23456777777776642 211 111111 122 66666666443333344433
Q ss_pred cccccEEeccccCCCCccccccccCCCCCCCCeEeccCCC
Q 006749 414 ASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCP 453 (632)
Q Consensus 414 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 453 (632)
.+|+.|+++++-..+..... .+..+..|+.|++.+|+
T Consensus 254 -ksL~~LDlsyNll~~hseL~--pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 254 -KSLYGLDLSYNLLSEHSELE--PLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -hhhhccchhHhhhhcchhhh--HHHHHHHHHHHhhcCCc
Confidence 66666776653222221111 12345566677777765
No 55
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.79 E-value=0.0012 Score=36.83 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=18.6
Q ss_pred CCccccccccccCCCCHHHHHHHHh
Q 006749 599 GKTLVGLNLQNCNSINSSTVARLVE 623 (632)
Q Consensus 599 ~~~L~~L~l~~c~~l~~~~~~~l~~ 623 (632)
|++|++|+|++|+++++.++..+.+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 4667888888888888888777653
No 56
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.75 E-value=0.001 Score=64.60 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=36.1
Q ss_pred CCcCCCChHHHHHHHccCCCccchhhHHHHHHHHHHHHhc
Q 006749 48 PSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTS 87 (632)
Q Consensus 48 ~~~~~LP~Eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 87 (632)
..|++||+|+|..|.++|+...|+++++.|||.||.++..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 3588999999999999998788999999999999997643
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.00069 Score=61.36 Aligned_cols=121 Identities=22% Similarity=0.323 Sum_probs=85.4
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChh-HHHhhhhhccC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDM-GISALSHAEQL 574 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~ 574 (632)
+.++|+.-+| .++|..+- . ..+.|+.|.|+- |.|+. +..+. .|++|++|+|..|.|.+. .+..+. ++|
T Consensus 20 ~vkKLNcwg~-~L~DIsic---~-kMp~lEVLsLSv-NkIss--L~pl~-rCtrLkElYLRkN~I~sldEL~YLk--nlp 88 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDISIC---E-KMPLLEVLSLSV-NKISS--LAPLQ-RCTRLKELYLRKNCIESLDELEYLK--NLP 88 (388)
T ss_pred HhhhhcccCC-CccHHHHH---H-hcccceeEEeec-ccccc--chhHH-HHHHHHHHHHHhcccccHHHHHHHh--cCc
Confidence 5777888787 67766543 3 578999999987 67754 33344 499999999999998874 455555 899
Q ss_pred CccEEeccCCCCcCcchHH---HHHHhCCccccccccccCCCCHHHH-HHHHhcc-ccccc
Q 006749 575 NLQVLSLSSCSEVSNKSMP---ALKKLGKTLVGLNLQNCNSINSSTV-ARLVESL-WRCDI 630 (632)
Q Consensus 575 ~L~~L~l~~c~~l~~~~~~---~~~~~~~~L~~L~l~~c~~l~~~~~-~~l~~~l-~~~~~ 630 (632)
+|+.|+|..++-....+-. ......|+|+.||= -.+++..+ +++.+-. |.||+
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn---v~VteeEle~ALr~g~~PE~~~ 146 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN---VPVTEEELEEALRDGIYPECDM 146 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhccC---ccccHHHHHHHHhcCCCCchhh
Confidence 9999999997755444433 35566788999872 44665544 4466655 77764
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.66 E-value=0.0011 Score=68.29 Aligned_cols=136 Identities=23% Similarity=0.156 Sum_probs=66.8
Q ss_pred hhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhhCCCCcEEeccCCCCCCchH
Q 006749 168 FGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDG 247 (632)
Q Consensus 168 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~L~~~~~~~~~~ 247 (632)
..+..+....++++.|.+...+.-...+...++ .|..|+.|.+.+|+--+..++..+-. .|++|--.+. . ..
T Consensus 74 ~qLq~i~d~lqkt~~lkl~~~pa~~pt~pi~if-pF~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC~~S---l-~A 145 (1096)
T KOG1859|consen 74 EQLQRILDFLQKTKVLKLLPSPARDPTEPISIF-PFRSLRVLELRGCDLSTAKGLQELRH---QLEKLICHNS---L-DA 145 (1096)
T ss_pred HHHHHHHHHHhhheeeeecccCCCCCCCCceec-cccceeeEEecCcchhhhhhhHHHHH---hhhhhhhhcc---H-HH
Confidence 344555555667777777665444333333343 67788888888875444444444432 3444442221 1 11
Q ss_pred HHHHhhcC-----C-----CCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCcccceecccC
Q 006749 248 LQAIGKFC-----R-----NLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSD 317 (632)
Q Consensus 248 ~~~l~~~~-----~-----~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~ 317 (632)
+..+...| . .|...+.+.+.-...+..-.+... ++.|+|+.+++.+.. ....++.|++|++++
T Consensus 146 l~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~a----le~LnLshNk~~~v~---~Lr~l~~LkhLDlsy 218 (1096)
T KOG1859|consen 146 LRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPA----LESLNLSHNKFTKVD---NLRRLPKLKHLDLSY 218 (1096)
T ss_pred HHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHHHH----hhhhccchhhhhhhH---HHHhccccccccccc
Confidence 11111111 1 122223222221111111122222 777788877776654 445677888888877
Q ss_pred C
Q 006749 318 L 318 (632)
Q Consensus 318 ~ 318 (632)
+
T Consensus 219 N 219 (1096)
T KOG1859|consen 219 N 219 (1096)
T ss_pred c
Confidence 6
No 59
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.31 E-value=0.0026 Score=58.67 Aligned_cols=42 Identities=31% Similarity=0.339 Sum_probs=35.8
Q ss_pred cCCCCCcCCCChHHHHHHHcc-----CCCccchhhHHHHHHHHHHHHh
Q 006749 44 FENQPSIDVLPDECLYEIFRR-----LPSGKERSFAACVSKKWLMMLT 86 (632)
Q Consensus 44 ~~~~~~~~~LP~Eil~~If~~-----L~~~~d~~~~~~Vcr~W~~~~~ 86 (632)
++....|..||||||..||.. |+ .+++.++++|||.|+..+.
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~~d-~rsL~~~s~vCr~F~~~~R 147 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSLLD-LRSLEQLSLVCRGFYKCAR 147 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhhcc-hhhHHHhHhhHHHHHHHHc
Confidence 455567899999999999985 55 7999999999999998763
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.27 E-value=0.0077 Score=38.69 Aligned_cols=33 Identities=42% Similarity=0.431 Sum_probs=15.1
Q ss_pred CcCeEeccCCCCChhHHHhhhhhccCCccEEeccCC
Q 006749 549 FLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSC 584 (632)
Q Consensus 549 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c 584 (632)
+|++|++++|+|++... .+. .+++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~--~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELS--NLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGT--TCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCc-hHh--CCCCCCEEEecCC
Confidence 45555555555554221 123 4555555555554
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.27 E-value=0.0018 Score=58.45 Aligned_cols=89 Identities=22% Similarity=0.212 Sum_probs=56.2
Q ss_pred cCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCCh-hHHHhhhhhccCCccEEeccCCCCcC-cchHHHHHH
Q 006749 520 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD-MGISALSHAEQLNLQVLSLSSCSEVS-NKSMPALKK 597 (632)
Q Consensus 520 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~ 597 (632)
.+|+|+.|.++..+.-...++..+...+|+|++|++++|+|.+ ..+..+. .+++|..|++.+|+-.. +..-..+..
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~--~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK--ELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh--hhcchhhhhcccCCccccccHHHHHHH
Confidence 3678888888763223344555666667888888888888764 2333333 66678888888876221 112234666
Q ss_pred hCCcccccccccc
Q 006749 598 LGKTLVGLNLQNC 610 (632)
Q Consensus 598 ~~~~L~~L~l~~c 610 (632)
+.++|.+|+-..+
T Consensus 141 ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 141 LLPSLKYLDGCDV 153 (260)
T ss_pred Hhhhhcccccccc
Confidence 7777888876553
No 62
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.15 E-value=0.0036 Score=64.10 Aligned_cols=198 Identities=24% Similarity=0.319 Sum_probs=107.7
Q ss_pred ccccEEeccccCCCCcccccc--ccCCCC-CCCCeEeccCCCCCCHHHH----HHHhhcCCCCcEEEeccccCCCchhhH
Q 006749 415 SKLKSLTLVKCMGIKDMATEM--PMLSPN-CSLRSLSIRNCPGFGNASL----AMLGKLCPQLQHVDLSGLYGITDVGIF 487 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~--~~~~~~-~~L~~L~l~~~~~l~~~~l----~~~~~~~~~L~~L~l~~~~~l~~~~~~ 487 (632)
++|+.|++++++.. +..... ..+... ..++.|.+..|. ++.... ..+.. ...++.++++.+ .+...+..
T Consensus 115 ~~L~~L~l~~n~l~-~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~~~L~~-~~~l~~l~l~~n-~l~~~g~~ 190 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLG-DEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLAAVLEK-NEHLTELDLSLN-GLIELGLL 190 (478)
T ss_pred ccHhHhhcccCCCc-cHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHHHHHhc-ccchhHHHHHhc-ccchhhhH
Confidence 78888888885543 222211 112232 556677777765 332222 22222 567777777763 33344433
Q ss_pred HHHhhc------cCCccEEecCCCCCCChHHHHHHHhh--cCCC-CCeeeccCCCCCChHHHHHHHhcC----CCcCeEe
Q 006749 488 PLLESC------KAGLVKVNLSGCLNLTDEVVLALARL--HSET-LELLNLDGCRKITDASLVAIGNNC----MFLSYLD 554 (632)
Q Consensus 488 ~l~~~~------~~~L~~L~l~~c~~l~~~~~~~l~~~--~~~~-L~~L~l~~c~~l~~~~~~~l~~~~----~~L~~L~ 554 (632)
.+.+.. ..++++|.+++| .++......+... ..+. ++.|++.. +.+.|.+...+...+ +.+++++
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~ 268 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLD 268 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhhhh
Confidence 332221 136778888876 4444433333320 2333 56677765 677777666665433 3457788
Q ss_pred ccCCCCChhHHHhhhh--hccCCccEEeccCCCCcCcchHHHHHHh---CCccccccccccCCCCHHHHH
Q 006749 555 VSKCAITDMGISALSH--AEQLNLQVLSLSSCSEVSNKSMPALKKL---GKTLVGLNLQNCNSINSSTVA 619 (632)
Q Consensus 555 L~~~~i~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~---~~~L~~L~l~~c~~l~~~~~~ 619 (632)
++.|.+++.+...+.+ ..++.++.+.+++++ +++.......+. ...+..+-+.++...+..+..
T Consensus 269 l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~-l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 337 (478)
T KOG4308|consen 269 LSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP-LTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTS 337 (478)
T ss_pred hhcCCccccchHHHHHHHhhhHHHHHhhcccCc-cccHHHHHHHHHhhhcccchhhhccccCccchhHHH
Confidence 8888877776666653 256677777777754 655555443332 122555555555555544433
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.15 E-value=0.0071 Score=38.85 Aligned_cols=38 Identities=34% Similarity=0.440 Sum_probs=27.1
Q ss_pred CCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCCh
Q 006749 522 ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD 562 (632)
Q Consensus 522 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 562 (632)
++|++|++++ +++++... .+ ..|++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~-N~i~~l~~-~l-~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPP-EL-SNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETS-SS-SSHGG-HG-TTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccC-CCCcccCc-hH-hCCCCCCEEEecCCCCCC
Confidence 4788899988 57876442 23 458999999999998875
No 64
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.05 E-value=0.00019 Score=59.89 Aligned_cols=113 Identities=17% Similarity=0.087 Sum_probs=59.2
Q ss_pred CCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHH
Q 006749 438 LSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALA 517 (632)
Q Consensus 438 ~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 517 (632)
++.+++|+.|++.-++.. .+..-...+|.|+.|++.. +++.+..+..-+-... .|+.|.++. +.+.. ....+.
T Consensus 75 issl~klr~lnvgmnrl~---~lprgfgs~p~levldlty-nnl~e~~lpgnff~m~-tlralyl~d-ndfe~-lp~dvg 147 (264)
T KOG0617|consen 75 ISSLPKLRILNVGMNRLN---ILPRGFGSFPALEVLDLTY-NNLNENSLPGNFFYMT-TLRALYLGD-NDFEI-LPPDVG 147 (264)
T ss_pred hhhchhhhheecchhhhh---cCccccCCCchhhhhhccc-cccccccCCcchhHHH-HHHHHHhcC-CCccc-CChhhh
Confidence 456677777776654311 1111122357888888876 4444322211110111 567777766 23321 122233
Q ss_pred hhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCCh
Q 006749 518 RLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD 562 (632)
Q Consensus 518 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 562 (632)
.+++|+.|.+.....++ . ...+. .+..|++|++.+|+++-
T Consensus 148 --~lt~lqil~lrdndll~-l-pkeig-~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 148 --KLTNLQILSLRDNDLLS-L-PKEIG-DLTRLRELHIQGNRLTV 187 (264)
T ss_pred --hhcceeEEeeccCchhh-C-cHHHH-HHHHHHHHhcccceeee
Confidence 37888888887733222 1 12233 37889999999997543
No 65
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.88 E-value=0.0072 Score=33.68 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=15.3
Q ss_pred cCCccEEeccCCCCcCcchHHHHH
Q 006749 573 QLNLQVLSLSSCSEVSNKSMPALK 596 (632)
Q Consensus 573 ~~~L~~L~l~~c~~l~~~~~~~~~ 596 (632)
+++|+.|+|++|++|||.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 356667777777667666665543
No 66
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.77 E-value=0.0038 Score=63.93 Aligned_cols=204 Identities=25% Similarity=0.267 Sum_probs=130.0
Q ss_pred ccEEeccccCCCCcc-ccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCC----CCcEEEeccccCCCchhhHHHHh
Q 006749 417 LKSLTLVKCMGIKDM-ATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCP----QLQHVDLSGLYGITDVGIFPLLE 491 (632)
Q Consensus 417 L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~----~L~~L~l~~~~~l~~~~~~~l~~ 491 (632)
+..+.+.+|...... ......+...+.|..|++++|. +++.....+....+ .++.|++.. ..++.++...+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~-c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVS-CSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhc-ccccccchHHHHH
Confidence 566666665533321 1112235667889999999875 55666666655433 456677776 4555555554443
Q ss_pred hc--cCCccEEecCCCCCCChHHHHHHHh---h---cCCCCCeeeccCCCCCChHHHHHHH---hcCCC-cCeEeccCCC
Q 006749 492 SC--KAGLVKVNLSGCLNLTDEVVLALAR---L---HSETLELLNLDGCRKITDASLVAIG---NNCMF-LSYLDVSKCA 559 (632)
Q Consensus 492 ~~--~~~L~~L~l~~c~~l~~~~~~~l~~---~---~~~~L~~L~l~~c~~l~~~~~~~l~---~~~~~-L~~L~L~~~~ 559 (632)
.. ...++.++++.+... ..+...+.. . ...++++|.+.+| .++......+. ...+. +.+|++.+|.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 32 236777888775333 322222221 0 2457889999996 66665544443 23444 6679999999
Q ss_pred CChhHHHhhhhhcc----CCccEEeccCCCCcCcchHHHHH---HhCCccccccccccCCCCHHHHHHHHhcccc
Q 006749 560 ITDMGISALSHAEQ----LNLQVLSLSSCSEVSNKSMPALK---KLGKTLVGLNLQNCNSINSSTVARLVESLWR 627 (632)
Q Consensus 560 i~~~~~~~l~~~~~----~~L~~L~l~~c~~l~~~~~~~~~---~~~~~L~~L~l~~c~~l~~~~~~~l~~~l~~ 627 (632)
+.+.+++.+. ..+ +.++.++++.|. +++.....+. ..++.++++.+++ +.+++.+...+.+.+.+
T Consensus 245 l~d~g~~~L~-~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~-n~l~~~~~~~~~~~l~~ 316 (478)
T KOG4308|consen 245 LGDVGVEKLL-PCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSN-NPLTDYGVELLLEALER 316 (478)
T ss_pred cchHHHHHHH-HHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhccc-CccccHHHHHHHHHhhh
Confidence 9998888777 332 456899999976 7666665543 3467899999998 88999988888776644
No 67
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.62 E-value=0.0067 Score=56.42 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=36.6
Q ss_pred CCCCcCCCC----hHHHHHHHccCCCccchhhHHHHHHHHHHHH
Q 006749 46 NQPSIDVLP----DECLYEIFRRLPSGKERSFAACVSKKWLMML 85 (632)
Q Consensus 46 ~~~~~~~LP----~Eil~~If~~L~~~~d~~~~~~Vcr~W~~~~ 85 (632)
..|.+..|| ++|-..||+||+ ..++.++-+|||+|+++.
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld-~~sLc~celv~k~W~r~l 113 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLD-ALSLCACELVCKEWKRVL 113 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcc-hhhhhHHHHHHHHHHHHh
Confidence 458899999 999999999999 999999999999999976
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.60 E-value=0.0043 Score=56.15 Aligned_cols=90 Identities=23% Similarity=0.184 Sum_probs=52.8
Q ss_pred cCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCCh-HHHHHHHHhcCCCCeEecccCCCcchhhHHHHHh
Q 006749 333 QGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSD-NGLVAFSKAAGSLEILQLEECNRVSQSGILGVVS 411 (632)
Q Consensus 333 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 411 (632)
..+++|++|.++.+..-....+..++..+|+|++|+++++ .+.+ ..+.. .+.+++|..|++.+|.............
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p-l~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP-LKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch-hhhhcchhhhhcccCCccccccHHHHHH
Confidence 3457888888877632333445556666788888888885 4443 22222 2345777788887776544333333333
Q ss_pred cccccccEEeccc
Q 006749 412 NSASKLKSLTLVK 424 (632)
Q Consensus 412 ~~~~~L~~L~l~~ 424 (632)
..+++|++|+-.+
T Consensus 140 ~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 140 LLLPSLKYLDGCD 152 (260)
T ss_pred HHhhhhccccccc
Confidence 3446676666554
No 69
>PLN03150 hypothetical protein; Provisional
Probab=95.51 E-value=0.026 Score=60.83 Aligned_cols=59 Identities=19% Similarity=0.328 Sum_probs=25.2
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKC 558 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~ 558 (632)
+|+.|+|+++ .++......+.. +++|+.|++++ +.+.......+.....++..+++.+|
T Consensus 467 ~L~~LdLs~N-~lsg~iP~~l~~--L~~L~~L~Ls~-N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 467 SLEVLDLSYN-SFNGSIPESLGQ--LTSLRILNLNG-NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCCEEECCCC-CCCCCCchHHhc--CCCCCEEECcC-CcccccCChHHhhccccCceEEecCC
Confidence 5555555553 343333333332 55555555555 23332222222222233444555544
No 70
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.44 E-value=0.011 Score=51.37 Aligned_cols=39 Identities=26% Similarity=0.197 Sum_probs=19.5
Q ss_pred ccccEEeccccCCCCccccccccCCCCCCCCeEeccCCC
Q 006749 415 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCP 453 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 453 (632)
|.|++|.+-+++....-.+....+..+|+|+.|+.....
T Consensus 113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 444444444433332222333334567777777776654
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.008 Score=54.74 Aligned_cols=102 Identities=24% Similarity=0.353 Sum_probs=69.5
Q ss_pred CCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhh
Q 006749 149 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 228 (632)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 228 (632)
.+++.|+..++ .+.|..+ ...++.|+.|.|+-. +++ .+..+ ..|.+|++|.|.. +.+.+..-....++
T Consensus 19 ~~vkKLNcwg~----~L~DIsi---c~kMp~lEVLsLSvN-kIs--sL~pl-~rCtrLkElYLRk-N~I~sldEL~YLkn 86 (388)
T KOG2123|consen 19 ENVKKLNCWGC----GLDDISI---CEKMPLLEVLSLSVN-KIS--SLAPL-QRCTRLKELYLRK-NCIESLDELEYLKN 86 (388)
T ss_pred HHhhhhcccCC----CccHHHH---HHhcccceeEEeecc-ccc--cchhH-HHHHHHHHHHHHh-cccccHHHHHHHhc
Confidence 57788888888 6776554 457889999999753 444 33333 4889999999988 56766444445577
Q ss_pred CCCCcEEeccCCCCCCchH---HHHHhhcCCCCcEEE
Q 006749 229 CPNLTSLNIESCSKIGNDG---LQAIGKFCRNLQCLS 262 (632)
Q Consensus 229 l~~L~~L~L~~~~~~~~~~---~~~l~~~~~~L~~L~ 262 (632)
+|+|+.|-|..+......+ -......+|+|+.|+
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8999999888755333222 223344489999886
No 72
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.04 E-value=0.0078 Score=52.17 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=42.1
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChH-HHHHHHhcCCCcCeEeccCCCCChhHHH-hhhhhcc
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDA-SLVAIGNNCMFLSYLDVSKCAITDMGIS-ALSHAEQ 573 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~L~~L~L~~~~i~~~~~~-~l~~~~~ 573 (632)
.|.+|.+++ +.++.....-.. .+|+|..|.+.+ |.+... .+..+. .||.|+.|.+-+|++....-. ...-..+
T Consensus 65 rL~tLll~n-NrIt~I~p~L~~--~~p~l~~L~Ltn-Nsi~~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 65 RLHTLLLNN-NRITRIDPDLDT--FLPNLKTLILTN-NSIQELGDLDPLA-SCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred ccceEEecC-Ccceeeccchhh--hccccceEEecC-cchhhhhhcchhc-cCCccceeeecCCchhcccCceeEEEEec
Confidence 666666665 455544333222 256666666666 444332 222233 366677776666665543211 1111256
Q ss_pred CCccEEeccC
Q 006749 574 LNLQVLSLSS 583 (632)
Q Consensus 574 ~~L~~L~l~~ 583 (632)
|+|+.|++.+
T Consensus 140 p~l~~LDF~k 149 (233)
T KOG1644|consen 140 PSLRTLDFQK 149 (233)
T ss_pred CcceEeehhh
Confidence 6666666665
No 73
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.00 E-value=0.014 Score=47.22 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=29.3
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAIT 561 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~ 561 (632)
.|...+|++ +.+.+..-. +.. .++.++.|++++ +.+.+...+ +.. ++.|+.|+++.|.+.
T Consensus 54 el~~i~ls~-N~fk~fp~k-ft~-kf~t~t~lNl~~-neisdvPeE-~Aa-m~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 54 ELTKISLSD-NGFKKFPKK-FTI-KFPTATTLNLAN-NEISDVPEE-LAA-MPALRSLNLRFNPLN 113 (177)
T ss_pred eEEEEeccc-chhhhCCHH-Hhh-ccchhhhhhcch-hhhhhchHH-Hhh-hHHhhhcccccCccc
Confidence 455555555 233322222 222 345566666655 455555444 332 566666666666544
No 74
>PF13013 F-box-like_2: F-box-like domain
Probab=94.95 E-value=0.034 Score=43.57 Aligned_cols=34 Identities=18% Similarity=-0.001 Sum_probs=29.9
Q ss_pred CcCCCChHHHHHHHccCCCccchhhHHHHHH--HHHH
Q 006749 49 SIDVLPDECLYEIFRRLPSGKERSFAACVSK--KWLM 83 (632)
Q Consensus 49 ~~~~LP~Eil~~If~~L~~~~d~~~~~~Vcr--~W~~ 83 (632)
.+.+||+||+..||+|.. ..+...+...|+ +|..
T Consensus 21 tl~DLP~ELl~~I~~~C~-~~~l~~l~~~~~~~r~~r 56 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCN-DPILLALSRTCRAYRSWR 56 (109)
T ss_pred chhhChHHHHHHHHhhcC-cHHHHHHHHHHHHHHHHH
Confidence 589999999999999999 999999999888 4444
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.76 E-value=0.02 Score=31.15 Aligned_cols=23 Identities=48% Similarity=0.453 Sum_probs=14.4
Q ss_pred CCCcCeEeccCCCCChhHHHhhh
Q 006749 547 CMFLSYLDVSKCAITDMGISALS 569 (632)
Q Consensus 547 ~~~L~~L~L~~~~i~~~~~~~l~ 569 (632)
+++|++|+|++|+|++.++..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 46777777777777777776654
No 76
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.85 E-value=0.13 Score=52.48 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=18.2
Q ss_pred CCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccC
Q 006749 547 CMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSS 583 (632)
Q Consensus 547 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~ 583 (632)
+++++.|++++|.+++... +. ...+++.|++++
T Consensus 254 l~~l~~L~~s~n~i~~i~~--~~--~~~~l~~L~~s~ 286 (394)
T COG4886 254 LSNLETLDLSNNQISSISS--LG--SLTNLRELDLSG 286 (394)
T ss_pred ccccceecccccccccccc--cc--ccCccCEEeccC
Confidence 5556666666666555322 22 444666666665
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.94 E-value=0.083 Score=28.65 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=11.5
Q ss_pred CccccccccccCCCCHHHHHHHH
Q 006749 600 KTLVGLNLQNCNSINSSTVARLV 622 (632)
Q Consensus 600 ~~L~~L~l~~c~~l~~~~~~~l~ 622 (632)
++|++|+|++| ++++.+++.+.
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHhC
Confidence 45666666663 36666666554
No 78
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.90 E-value=0.04 Score=44.74 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=44.0
Q ss_pred CccEEecCCCCCCC-hHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccC
Q 006749 496 GLVKVNLSGCLNLT-DEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQL 574 (632)
Q Consensus 496 ~L~~L~l~~c~~l~-~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 574 (632)
.+-.++|++|.-+. ...+..+. ....|...+|++ |.+.+.. ..+....+.++.|++.+|.+++...+ ++ .+|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~--~~~el~~i~ls~-N~fk~fp-~kft~kf~t~t~lNl~~neisdvPeE-~A--am~ 100 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLS--KGYELTKISLSD-NGFKKFP-KKFTIKFPTATTLNLANNEISDVPEE-LA--AMP 100 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHh--CCceEEEEeccc-chhhhCC-HHHhhccchhhhhhcchhhhhhchHH-Hh--hhH
Confidence 34456666664331 12222222 245566666666 4443322 23333356677777777777665444 44 666
Q ss_pred CccEEeccCCC
Q 006749 575 NLQVLSLSSCS 585 (632)
Q Consensus 575 ~L~~L~l~~c~ 585 (632)
.|+.|+++.++
T Consensus 101 aLr~lNl~~N~ 111 (177)
T KOG4579|consen 101 ALRSLNLRFNP 111 (177)
T ss_pred HhhhcccccCc
Confidence 77777777755
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=91.40 E-value=0.078 Score=55.38 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=40.7
Q ss_pred ccCCCCCcCCCChHHHHHHHccCCCccchhhHHHHHHHHHHHHhchh
Q 006749 43 EFENQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIR 89 (632)
Q Consensus 43 ~~~~~~~~~~LP~Eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~ 89 (632)
+....+.+..||.|+..+||.||+ .++...+++||+.|+.+.....
T Consensus 101 ~~~~~dfi~~lp~el~~~il~~Ld-~~~l~~~~~v~~~w~~~~~~~~ 146 (537)
T KOG0274|consen 101 PLGQRDFLSLLPSELSLHILSFLD-GRDLLAVRQVCRNWNKLLDDDK 146 (537)
T ss_pred cccccchhhcccchhcccccccCC-HHHhhhhhhhcchhhhhhhccc
Confidence 345778999999999999999999 9999999999999999875433
No 80
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.16 E-value=0.24 Score=50.56 Aligned_cols=148 Identities=26% Similarity=0.258 Sum_probs=82.5
Q ss_pred CCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCC
Q 006749 443 SLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSE 522 (632)
Q Consensus 443 ~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 522 (632)
+|+.|+++++. +.... .-...+++|+.|++++ +.+.+-... .... +.|+.|.+++ +++.+..... . ...
T Consensus 141 nL~~L~l~~N~-i~~l~--~~~~~l~~L~~L~l~~-N~l~~l~~~--~~~~-~~L~~L~ls~-N~i~~l~~~~--~-~~~ 209 (394)
T COG4886 141 NLKELDLSDNK-IESLP--SPLRNLPNLKNLDLSF-NDLSDLPKL--LSNL-SNLNNLDLSG-NKISDLPPEI--E-LLS 209 (394)
T ss_pred hcccccccccc-hhhhh--hhhhccccccccccCC-chhhhhhhh--hhhh-hhhhheeccC-CccccCchhh--h-hhh
Confidence 66666666653 22110 1122457777777776 333321111 0011 2677888877 3554433321 1 234
Q ss_pred CCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCCh--hHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCC
Q 006749 523 TLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD--MGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGK 600 (632)
Q Consensus 523 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~--~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 600 (632)
.|++|.+++...+... .....+.++..+.+.+|++.+ ..+. .++.++.|+++++. +++... .....
T Consensus 210 ~L~~l~~~~N~~~~~~---~~~~~~~~l~~l~l~~n~~~~~~~~~~-----~l~~l~~L~~s~n~-i~~i~~---~~~~~ 277 (394)
T COG4886 210 ALEELDLSNNSIIELL---SSLSNLKNLSGLELSNNKLEDLPESIG-----NLSNLETLDLSNNQ-ISSISS---LGSLT 277 (394)
T ss_pred hhhhhhhcCCcceecc---hhhhhcccccccccCCceeeeccchhc-----cccccceecccccc-cccccc---ccccC
Confidence 5888888873223221 112347778888888887665 3333 45589999999954 755433 33445
Q ss_pred ccccccccccCCCC
Q 006749 601 TLVGLNLQNCNSIN 614 (632)
Q Consensus 601 ~L~~L~l~~c~~l~ 614 (632)
+++.|++++ +.+.
T Consensus 278 ~l~~L~~s~-n~~~ 290 (394)
T COG4886 278 NLRELDLSG-NSLS 290 (394)
T ss_pred ccCEEeccC-cccc
Confidence 799999988 5554
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.81 E-value=0.39 Score=27.17 Aligned_cols=22 Identities=36% Similarity=0.375 Sum_probs=17.4
Q ss_pred CCcCeEeccCCCCChhHHHhhh
Q 006749 548 MFLSYLDVSKCAITDMGISALS 569 (632)
Q Consensus 548 ~~L~~L~L~~~~i~~~~~~~l~ 569 (632)
++|++|+|++|.+.+.|...++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5688888888888888877776
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.35 E-value=0.48 Score=26.82 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=17.7
Q ss_pred CccccccccccCCCCHHHHHHHHhcc
Q 006749 600 KTLVGLNLQNCNSINSSTVARLVESL 625 (632)
Q Consensus 600 ~~L~~L~l~~c~~l~~~~~~~l~~~l 625 (632)
++|++|+|++ +.+++.|...+.+.+
T Consensus 2 ~~L~~LdL~~-N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSN-NKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCC-CCCCHHHHHHHHHHh
Confidence 3577777777 677777777776654
No 83
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=87.69 E-value=0.12 Score=52.81 Aligned_cols=35 Identities=31% Similarity=0.250 Sum_probs=18.3
Q ss_pred ccEEeccCCCCcCcchHHHHHHhCCccccccccccCCCC
Q 006749 576 LQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSIN 614 (632)
Q Consensus 576 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 614 (632)
|+.+++.+++ +.... .......++..|++.+ +++.
T Consensus 234 L~~l~l~~n~-i~~~~--~~~~~~~~l~~l~~~~-n~~~ 268 (414)
T KOG0531|consen 234 LRELYLSGNR-ISRSP--EGLENLKNLPVLDLSS-NRIS 268 (414)
T ss_pred HHHHhcccCc-ccccc--ccccccccccccchhh-cccc
Confidence 6777777754 43211 1222344577777766 4443
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=86.12 E-value=0.56 Score=22.89 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=4.2
Q ss_pred CcCeEeccCCCC
Q 006749 549 FLSYLDVSKCAI 560 (632)
Q Consensus 549 ~L~~L~L~~~~i 560 (632)
+|+.|+|++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444443
No 85
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=81.75 E-value=0.81 Score=46.88 Aligned_cols=104 Identities=32% Similarity=0.314 Sum_probs=58.6
Q ss_pred CCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhc
Q 006749 467 CPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNN 546 (632)
Q Consensus 467 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 546 (632)
+.+|+.|++.+ +.+... ......++ +|++|++++ +.+++.. .+. .++.|+.|++++ |.+.+..- + ..
T Consensus 94 ~~~l~~l~l~~-n~i~~i--~~~l~~~~-~L~~L~ls~-N~I~~i~--~l~--~l~~L~~L~l~~-N~i~~~~~--~-~~ 160 (414)
T KOG0531|consen 94 LKSLEALDLYD-NKIEKI--ENLLSSLV-NLQVLDLSF-NKITKLE--GLS--TLTLLKELNLSG-NLISDISG--L-ES 160 (414)
T ss_pred ccceeeeeccc-cchhhc--ccchhhhh-cchheeccc-ccccccc--chh--hccchhhheecc-CcchhccC--C-cc
Confidence 47788888876 443211 11122233 788888877 3554322 122 255688888877 55543221 1 22
Q ss_pred CCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCC
Q 006749 547 CMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 585 (632)
Q Consensus 547 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 585 (632)
+++|+.+++++|.+.+..-..+. .+.+++.+.+.++.
T Consensus 161 l~~L~~l~l~~n~i~~ie~~~~~--~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIENDELS--ELISLEELDLGGNS 197 (414)
T ss_pred chhhhcccCCcchhhhhhhhhhh--hccchHHHhccCCc
Confidence 67788888888877664431012 44577778887754
No 86
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=80.86 E-value=1.1 Score=34.84 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.7
Q ss_pred CCCcCCCChHHHHHHHccCCCccchhhH
Q 006749 47 QPSIDVLPDECLYEIFRRLPSGKERSFA 74 (632)
Q Consensus 47 ~~~~~~LP~Eil~~If~~L~~~~d~~~~ 74 (632)
...|..||.||..+|+++|+ ..|+...
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~-~~dL~~l 95 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLS-NKDLKKL 95 (97)
T ss_pred CCchhhCCHHHHHHHHHcCC-HHHHHHH
Confidence 47899999999999999999 8887643
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.72 E-value=4.9 Score=41.17 Aligned_cols=91 Identities=19% Similarity=0.163 Sum_probs=57.2
Q ss_pred HHHHhhcCCCCCeeeccCCCCCC-hHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcc--
Q 006749 514 LALARLHSETLELLNLDGCRKIT-DASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNK-- 590 (632)
Q Consensus 514 ~~l~~~~~~~L~~L~l~~c~~l~-~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~-- 590 (632)
..... ..+.+..+.+++ |++- -..+..+.+..|+|+.|+|++|...-.....+-+.+...|++|.+.|++-.+..
T Consensus 211 ~~~~~-n~p~i~sl~lsn-NrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 211 KHIEE-NFPEILSLSLSN-NRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred HHhhc-CCcceeeeeccc-chhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhh
Confidence 33344 678888888888 4443 355667777789999999999832111222222235667889999987733322
Q ss_pred ---hHHHHHHhCCcccccc
Q 006749 591 ---SMPALKKLGKTLVGLN 606 (632)
Q Consensus 591 ---~~~~~~~~~~~L~~L~ 606 (632)
-+..+...+|+|..||
T Consensus 289 ~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 289 RSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hHHHHHHHHHhcchheeec
Confidence 2234555677777775
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.41 E-value=5.6 Score=40.79 Aligned_cols=81 Identities=17% Similarity=0.140 Sum_probs=53.8
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCC--CCChHHHHHHH-hcCCCcCeEeccCCCCChh------HHH
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCR--KITDASLVAIG-NNCMFLSYLDVSKCAITDM------GIS 566 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~--~l~~~~~~~l~-~~~~~L~~L~L~~~~i~~~------~~~ 566 (632)
.+..+.|++..-..-.++..+.. ..|+|..|+|++ + .+... ..+. -....|++|.+.+|++... -+.
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq-~apklk~L~LS~-N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQ-IAPKLKTLDLSH-NHSKISSE--SELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred ceeeeecccchhhchhhhhHHHH-hcchhheeeccc-chhhhcch--hhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 78889998854445566777777 889999999998 4 22221 1221 2356799999999975432 223
Q ss_pred hhhhhccCCccEEec
Q 006749 567 ALSHAEQLNLQVLSL 581 (632)
Q Consensus 567 ~l~~~~~~~L~~L~l 581 (632)
.+. ..+|+|..|+=
T Consensus 295 ~i~-~~FPKL~~LDG 308 (585)
T KOG3763|consen 295 AIR-ELFPKLLRLDG 308 (585)
T ss_pred HHH-HhcchheeecC
Confidence 233 57888877763
No 89
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=71.30 E-value=4.1 Score=37.29 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=34.5
Q ss_pred ccCCCCCcCCCChHHHHHHHccCCCccchhhHHHHHHHHHHH
Q 006749 43 EFENQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMM 84 (632)
Q Consensus 43 ~~~~~~~~~~LP~Eil~~If~~L~~~~d~~~~~~Vcr~W~~~ 84 (632)
+.+....+.+||.|++..|+..|++.+|+..+++|--.-+.+
T Consensus 195 ~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l 236 (332)
T KOG3926|consen 195 PDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKL 236 (332)
T ss_pred CCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHH
Confidence 344567899999999999999999999999999886554443
No 90
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=68.05 E-value=2.6 Score=22.14 Aligned_cols=12 Identities=50% Similarity=0.744 Sum_probs=5.7
Q ss_pred cCeEeccCCCCC
Q 006749 550 LSYLDVSKCAIT 561 (632)
Q Consensus 550 L~~L~L~~~~i~ 561 (632)
|++|+|++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444555554443
No 91
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=67.11 E-value=1.6 Score=44.78 Aligned_cols=33 Identities=30% Similarity=0.286 Sum_probs=13.9
Q ss_pred cCeEeccCCCCChhHHHhhhhhccCCccEEeccCCC
Q 006749 550 LSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 585 (632)
Q Consensus 550 L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 585 (632)
|..||++.|+|+...+.. .++..|++|.|.+++
T Consensus 213 Li~lDfScNkis~iPv~f---r~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLPVDF---RKMRHLQVLQLENNP 245 (722)
T ss_pred eeeeecccCceeecchhh---hhhhhheeeeeccCC
Confidence 444555555443322111 133445555555544
No 92
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=59.68 E-value=8 Score=21.12 Aligned_cols=14 Identities=29% Similarity=0.273 Sum_probs=7.6
Q ss_pred CCcCeEeccCCCCC
Q 006749 548 MFLSYLDVSKCAIT 561 (632)
Q Consensus 548 ~~L~~L~L~~~~i~ 561 (632)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45555555555544
No 93
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=59.68 E-value=8 Score=21.12 Aligned_cols=14 Identities=29% Similarity=0.273 Sum_probs=7.6
Q ss_pred CCcCeEeccCCCCC
Q 006749 548 MFLSYLDVSKCAIT 561 (632)
Q Consensus 548 ~~L~~L~L~~~~i~ 561 (632)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45555555555544
No 94
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=52.44 E-value=13 Score=20.65 Aligned_cols=14 Identities=36% Similarity=0.332 Sum_probs=9.6
Q ss_pred CCcCeEeccCCCCC
Q 006749 548 MFLSYLDVSKCAIT 561 (632)
Q Consensus 548 ~~L~~L~L~~~~i~ 561 (632)
.+|+.|+++.|.|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56777777777664
No 95
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=47.79 E-value=22 Score=34.27 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=32.4
Q ss_pred CCcCCCChHHHHHHHccCCCc-------cchhhHHHHHHHHHHHHh
Q 006749 48 PSIDVLPDECLYEIFRRLPSG-------KERSFAACVSKKWLMMLT 86 (632)
Q Consensus 48 ~~~~~LP~Eil~~If~~L~~~-------~d~~~~~~Vcr~W~~~~~ 86 (632)
..+.+||+|.|..|+....+. +..+.++-||+.|+++..
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~ 88 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISK 88 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcc
Confidence 578899999999999988733 345689999999999753
No 96
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=47.71 E-value=4.1 Score=41.93 Aligned_cols=105 Identities=23% Similarity=0.210 Sum_probs=64.7
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 575 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 575 (632)
-|+.|-+++ ++++..... +. ..++|..|+.+.| .+..... .+ .++.+|+.|.+..|++.+. ...++ .-.
T Consensus 144 pLkvli~sN-Nkl~~lp~~-ig--~~~tl~~ld~s~n-ei~slps-ql-~~l~slr~l~vrRn~l~~l-p~El~---~Lp 212 (722)
T KOG0532|consen 144 PLKVLIVSN-NKLTSLPEE-IG--LLPTLAHLDVSKN-EIQSLPS-QL-GYLTSLRDLNVRRNHLEDL-PEELC---SLP 212 (722)
T ss_pred cceeEEEec-CccccCCcc-cc--cchhHHHhhhhhh-hhhhchH-Hh-hhHHHHHHHHHhhhhhhhC-CHHHh---CCc
Confidence 477777776 344432222 12 3578888998874 4433221 22 3477889999998886653 23333 235
Q ss_pred ccEEeccCCCCcCcchHHHHHHhCCccccccccccCCCCH
Q 006749 576 LQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINS 615 (632)
Q Consensus 576 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 615 (632)
|..|+++. ++|+ .++.-...+..|++|-+.+.| +..
T Consensus 213 Li~lDfSc-Nkis--~iPv~fr~m~~Lq~l~LenNP-LqS 248 (722)
T KOG0532|consen 213 LIRLDFSC-NKIS--YLPVDFRKMRHLQVLQLENNP-LQS 248 (722)
T ss_pred eeeeeccc-Ccee--ecchhhhhhhhheeeeeccCC-CCC
Confidence 88999886 6684 444444556679999999844 443
No 97
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=46.08 E-value=16 Score=20.23 Aligned_cols=8 Identities=25% Similarity=0.642 Sum_probs=3.2
Q ss_pred CCeEeccC
Q 006749 444 LRSLSIRN 451 (632)
Q Consensus 444 L~~L~l~~ 451 (632)
|++|++..
T Consensus 2 LKtL~L~~ 9 (26)
T PF07723_consen 2 LKTLHLDS 9 (26)
T ss_pred CeEEEeeE
Confidence 34444433
No 98
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=37.93 E-value=66 Score=32.77 Aligned_cols=110 Identities=14% Similarity=-0.013 Sum_probs=45.6
Q ss_pred cccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhh--cCCccceeecCCCCCCChH-HHHHHH
Q 006749 308 KALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGK--GCLNLKQMCLRKCCFVSDN-GLVAFS 384 (632)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~L~~~~~l~~~-~l~~l~ 384 (632)
+.+++++++.+.......+ .+... .++ +.++.|. .++..+..+.. .-..+..++++.+..-++. ....+.
T Consensus 165 pr~r~~dls~npi~dkvpi-hl~~p-~~p----l~lr~c~-lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~ 237 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPI-HLPQP-GNP----LSLRVCE-LSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKK 237 (553)
T ss_pred chhhhhccCCCcccccCCc-cccCC-CCc----cchhhhh-hhhhHHHHhhhhhccccccccccccCCCCccchhHHHHh
Confidence 5666777766633222222 22111 111 4444454 44444433321 1134666777665443332 122222
Q ss_pred HhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccc
Q 006749 385 KAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVK 424 (632)
Q Consensus 385 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 424 (632)
..-.-++.++.+...--.+..+..+...+-.+++..+++.
T Consensus 238 a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ 277 (553)
T KOG4242|consen 238 AGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSR 277 (553)
T ss_pred hhhhhhhcccccccccchhhcccccccccccccchhhhcc
Confidence 2223355555544322223333344444334555555544
No 99
>PHA03100 ankyrin repeat protein; Provisional
Probab=36.13 E-value=24 Score=37.05 Aligned_cols=30 Identities=20% Similarity=0.249 Sum_probs=25.4
Q ss_pred CCCcCCCChHHHHHHHccCCCccchhhHHHH
Q 006749 47 QPSIDVLPDECLYEIFRRLPSGKERSFAACV 77 (632)
Q Consensus 47 ~~~~~~LP~Eil~~If~~L~~~~d~~~~~~V 77 (632)
...|..||.||..+|++||+ ..|+.....-
T Consensus 445 ~~~w~~lP~Eik~~Il~~l~-~~dl~~~~~~ 474 (480)
T PHA03100 445 NTYWNILPIEIKYKILEYLS-NRDLKSLIEN 474 (480)
T ss_pred CCchhhCcHHHHHHHHHhCC-HHHHHHHHhh
Confidence 45799999999999999999 9898765443
No 100
>PHA02875 ankyrin repeat protein; Provisional
Probab=34.97 E-value=24 Score=36.13 Aligned_cols=28 Identities=25% Similarity=0.517 Sum_probs=24.1
Q ss_pred CCCCcCCCChHHHHHHHccCCCccchhhH
Q 006749 46 NQPSIDVLPDECLYEIFRRLPSGKERSFA 74 (632)
Q Consensus 46 ~~~~~~~LP~Eil~~If~~L~~~~d~~~~ 74 (632)
....|..||.||-.+|+++|+ ..|+...
T Consensus 383 ~~~~w~~LP~Eik~~Il~~l~-~~dL~~~ 410 (413)
T PHA02875 383 DESKWNILPHEIKYLILEKIG-NKDIDIA 410 (413)
T ss_pred cccchhcCcHHHHHHHHHHhc-cchhhhh
Confidence 357799999999999999999 8887654
No 101
>PHA02989 ankyrin repeat protein; Provisional
Probab=31.14 E-value=28 Score=36.68 Aligned_cols=30 Identities=17% Similarity=-0.012 Sum_probs=25.1
Q ss_pred CCCCcCCCChHHHHHHHccCCCccchhhHHH
Q 006749 46 NQPSIDVLPDECLYEIFRRLPSGKERSFAAC 76 (632)
Q Consensus 46 ~~~~~~~LP~Eil~~If~~L~~~~d~~~~~~ 76 (632)
....|+.||.||..+|+++|+ ..|+.....
T Consensus 455 ~~~~w~~LP~Eik~~Il~~L~-~~dl~~i~~ 484 (494)
T PHA02989 455 KKNYWMYLPIEIQINILEYLT-FSDFKTILK 484 (494)
T ss_pred cccHHHhCCHHHHHHHHHcCC-HHHHHHHHh
Confidence 357899999999999999999 888865443
No 102
>PHA02878 ankyrin repeat protein; Provisional
Probab=28.78 E-value=33 Score=35.95 Aligned_cols=28 Identities=18% Similarity=-0.003 Sum_probs=24.1
Q ss_pred CCCCcCCCChHHHHHHHccCCCccchhhH
Q 006749 46 NQPSIDVLPDECLYEIFRRLPSGKERSFA 74 (632)
Q Consensus 46 ~~~~~~~LP~Eil~~If~~L~~~~d~~~~ 74 (632)
....|+.||.||-.+|++||+ -.|+..+
T Consensus 443 ~~~~w~~lP~Eik~~Il~~l~-~~dl~~~ 470 (477)
T PHA02878 443 QNYMWNRLPLEIKHYIMELLD-DASLCNM 470 (477)
T ss_pred ccCcHhhCCHHHHHHHHHHcC-cHHHHHH
Confidence 346799999999999999999 8888653
No 103
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=27.61 E-value=28 Score=26.38 Aligned_cols=55 Identities=22% Similarity=0.083 Sum_probs=39.3
Q ss_pred cCccccCCCcccccCCcchhcccccccccCccccccCCCCCcCCCChHHHHHHHccCC
Q 006749 9 GDDLFSIGSHVDAYCPPRKRARLSAQFASGETEFEFENQPSIDVLPDECLYEIFRRLP 66 (632)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~LP~Eil~~If~~L~ 66 (632)
+||-.-+-+---||.+.-=|+.++.|..++ ..+.....|.++|..||+++..||.
T Consensus 24 ~Ddhefiikre~AmtSgTiraml~gpg~~s---e~~~n~v~f~di~shiLeKvc~Yl~ 78 (112)
T KOG3473|consen 24 SDDHEFIIKREHAMTSGTIRAMLSGPGVFS---EAEKNEVYFRDIPSHILEKVCEYLA 78 (112)
T ss_pred CCCcEEEEeehhhhhhhHHHHHHcCCcccc---ccccceEEeccchHHHHHHHHHHhh
Confidence 444444445556777777778777665444 2345567899999999999999998
No 104
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=26.59 E-value=20 Score=29.18 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=5.6
Q ss_pred CCCcCeEeccC
Q 006749 547 CMFLSYLDVSK 557 (632)
Q Consensus 547 ~~~L~~L~L~~ 557 (632)
+++|+.+.+..
T Consensus 80 ~~~l~~i~~~~ 90 (129)
T PF13306_consen 80 CTNLKNIDIPS 90 (129)
T ss_dssp -TTECEEEETT
T ss_pred cccccccccCc
Confidence 55566665543
No 105
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=23.90 E-value=49 Score=18.40 Aligned_cols=13 Identities=38% Similarity=0.373 Sum_probs=7.3
Q ss_pred CcCeEeccCCCCC
Q 006749 549 FLSYLDVSKCAIT 561 (632)
Q Consensus 549 ~L~~L~L~~~~i~ 561 (632)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4556666666544
No 106
>PHA02798 ankyrin-like protein; Provisional
Probab=21.95 E-value=53 Score=34.59 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=22.6
Q ss_pred CCCCcCCCChHHHHHHHccCCCccchh
Q 006749 46 NQPSIDVLPDECLYEIFRRLPSGKERS 72 (632)
Q Consensus 46 ~~~~~~~LP~Eil~~If~~L~~~~d~~ 72 (632)
....|+.||.||-.+|+++|+ ..|+.
T Consensus 460 ~~~~w~~lP~Eik~~Il~~L~-~~dl~ 485 (489)
T PHA02798 460 ELSYWNYIPNEIKFKIINNLS-NNDIL 485 (489)
T ss_pred CcchhhhCCHHHHHHHHHcCC-hHHHH
Confidence 457899999999999999999 77764
No 107
>PF12586 DUF3760: Protein of unknown function (DUF3760); InterPro: IPR022235 This domain family is found in eukaryotes, and is typically between 46 and 64 amino acids in length.
Probab=20.25 E-value=49 Score=21.44 Aligned_cols=30 Identities=10% Similarity=-0.079 Sum_probs=23.6
Q ss_pred hHHHHHHHccCCCccchhhHHHHHHHHHHHH
Q 006749 55 DECLYEIFRRLPSGKERSFAACVSKKWLMML 85 (632)
Q Consensus 55 ~Eil~~If~~L~~~~d~~~~~~Vcr~W~~~~ 85 (632)
.+|...||++|. .-.-..+.++||..++..
T Consensus 6 ~~v~~lI~~~l~-~i~P~t~l~lSr~~yk~i 35 (46)
T PF12586_consen 6 GPVHDLILDELS-RIRPLTYLRLSRYHYKRI 35 (46)
T ss_pred HhHHHHHHHHHH-hcCChhheeeeHHHhhhh
Confidence 678888998888 555678888898888754
Done!