Query 006749
Match_columns 632
No_of_seqs 343 out of 3041
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 07:56:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 7.8E-42 2.7E-46 368.0 34.5 505 46-628 2-533 (594)
2 3ogk_B Coronatine-insensitive 100.0 3.3E-41 1.1E-45 362.8 33.5 494 51-604 14-542 (592)
3 2p1m_B Transport inhibitor res 100.0 8E-30 2.7E-34 274.3 34.6 411 146-608 102-539 (594)
4 3ogk_B Coronatine-insensitive 100.0 2.8E-29 9.5E-34 269.9 30.3 414 146-584 109-548 (592)
5 1z7x_W Ribonuclease inhibitor; 100.0 2.7E-26 9.1E-31 238.6 37.5 417 149-631 3-460 (461)
6 1z7x_W Ribonuclease inhibitor; 99.9 6.7E-25 2.3E-29 228.1 33.4 385 178-627 3-424 (461)
7 2ast_B S-phase kinase-associat 99.9 3.6E-26 1.2E-30 227.0 22.5 232 46-404 5-238 (336)
8 2z81_A CD282 antigen, TOLL-lik 99.9 6.3E-23 2.2E-27 218.1 11.0 437 148-624 49-522 (549)
9 3t6q_A CD180 antigen; protein- 99.9 1.2E-23 4E-28 226.5 2.9 312 285-623 256-570 (606)
10 3t6q_A CD180 antigen; protein- 99.9 1.9E-23 6.5E-28 224.9 3.4 261 333-615 275-537 (606)
11 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-23 5.2E-28 225.7 2.3 267 333-626 304-571 (606)
12 3rgz_A Protein brassinosteroid 99.9 2.4E-23 8.2E-28 229.1 1.4 156 415-585 394-549 (768)
13 3rgz_A Protein brassinosteroid 99.9 5.7E-24 2E-28 234.1 -5.2 425 148-611 99-549 (768)
14 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-23 5E-28 225.8 -2.7 254 333-615 282-535 (606)
15 2z63_A TOLL-like receptor 4, v 99.8 5E-23 1.7E-27 220.1 -7.9 424 148-613 51-531 (570)
16 2z7x_B TOLL-like receptor 1, v 99.8 8.9E-20 3.1E-24 192.3 15.6 427 149-621 21-489 (520)
17 1ziw_A TOLL-like receptor 3; i 99.8 5.5E-21 1.9E-25 208.6 5.5 91 520-615 478-574 (680)
18 2z7x_B TOLL-like receptor 1, v 99.8 7.2E-20 2.5E-24 193.0 13.8 417 152-615 3-458 (520)
19 1o6v_A Internalin A; bacterial 99.8 1.1E-18 3.9E-23 180.7 22.0 321 176-585 66-386 (466)
20 4fmz_A Internalin; leucine ric 99.8 4.8E-19 1.6E-23 176.4 18.4 302 228-610 42-343 (347)
21 1o6v_A Internalin A; bacterial 99.8 1.1E-18 3.8E-23 180.8 21.9 342 177-611 45-386 (466)
22 1ziw_A TOLL-like receptor 3; i 99.8 7.1E-21 2.4E-25 207.7 3.9 89 520-615 428-518 (680)
23 2ast_B S-phase kinase-associat 99.8 5.8E-18 2E-22 167.7 23.8 166 440-615 140-307 (336)
24 4fmz_A Internalin; leucine ric 99.8 8.1E-18 2.8E-22 167.5 24.2 303 202-585 42-344 (347)
25 2z81_A CD282 antigen, TOLL-lik 99.8 2.4E-19 8.3E-24 190.5 11.0 403 148-588 73-511 (549)
26 3j0a_A TOLL-like receptor 5; m 99.8 6.1E-21 2.1E-25 212.2 -2.2 300 147-477 46-390 (844)
27 4ecn_A Leucine-rich repeat pro 99.8 8.2E-20 2.8E-24 199.5 3.6 324 255-611 490-838 (876)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.8E-19 9.5E-24 190.1 6.7 428 149-622 52-519 (562)
29 2z63_A TOLL-like receptor 4, v 99.8 4.5E-20 1.5E-24 197.2 -0.7 395 147-585 74-529 (570)
30 3v47_A TOLL-like receptor 5B a 99.7 1.4E-18 4.9E-23 179.9 9.5 366 149-585 30-406 (455)
31 3v47_A TOLL-like receptor 5B a 99.7 6.3E-19 2.2E-23 182.6 6.3 365 178-616 30-411 (455)
32 3j0a_A TOLL-like receptor 5; m 99.7 4.8E-20 1.6E-24 205.0 -2.9 429 149-615 24-518 (844)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.3E-18 4.4E-23 185.0 8.2 422 149-615 31-487 (562)
34 4eco_A Uncharacterized protein 99.7 9.6E-20 3.3E-24 195.7 -1.0 296 285-610 275-597 (636)
35 2ca6_A RAN GTPase-activating p 99.7 1.5E-15 5.3E-20 153.1 26.4 43 521-564 273-319 (386)
36 2ca6_A RAN GTPase-activating p 99.7 3.6E-16 1.2E-20 157.8 21.0 137 468-609 159-312 (386)
37 3bz5_A Internalin-J, INLJ; leu 99.7 8E-17 2.7E-21 165.3 14.7 97 307-425 147-243 (457)
38 4g8a_A TOLL-like receptor 4; l 99.7 1.6E-19 5.4E-24 195.8 -6.1 223 387-625 370-592 (635)
39 4eco_A Uncharacterized protein 99.7 1.6E-18 5.5E-23 186.2 1.5 381 200-614 202-633 (636)
40 4ecn_A Leucine-rich repeat pro 99.7 1.9E-17 6.4E-22 180.9 6.8 329 228-589 489-841 (876)
41 3o6n_A APL1; leucine-rich repe 99.7 3.3E-17 1.1E-21 165.7 6.8 315 177-594 44-358 (390)
42 3bz5_A Internalin-J, INLJ; leu 99.7 1.1E-16 3.8E-21 164.2 9.1 181 176-398 62-243 (457)
43 3o6n_A APL1; leucine-rich repe 99.6 1.7E-16 5.9E-21 160.4 6.8 316 149-569 45-360 (390)
44 2id5_A Lingo-1, leucine rich r 99.6 5.7E-17 2E-21 168.8 1.5 167 415-596 176-342 (477)
45 2id5_A Lingo-1, leucine rich r 99.6 2.4E-16 8.1E-21 164.1 5.7 136 414-562 199-334 (477)
46 3oja_B Anopheles plasmodium-re 99.6 7.1E-16 2.4E-20 164.7 9.1 315 177-594 50-364 (597)
47 3goz_A Leucine-rich repeat-con 99.6 1.3E-14 4.3E-19 144.8 14.8 247 335-590 21-299 (362)
48 3oja_B Anopheles plasmodium-re 99.6 2.2E-15 7.6E-20 160.9 8.0 316 149-569 51-366 (597)
49 4g8a_A TOLL-like receptor 4; l 99.5 4.3E-16 1.5E-20 168.8 0.6 220 360-596 369-589 (635)
50 3goz_A Leucine-rich repeat-con 99.5 5.5E-13 1.9E-17 132.9 20.8 229 334-569 48-305 (362)
51 1jl5_A Outer protein YOPM; leu 99.5 1.6E-14 5.4E-19 148.1 9.3 344 149-611 71-427 (454)
52 1jl5_A Outer protein YOPM; leu 99.5 3.8E-14 1.3E-18 145.2 11.4 374 149-615 11-410 (454)
53 3o53_A Protein LRIM1, AGAP0063 99.5 2E-14 6.8E-19 140.5 4.1 173 415-609 99-271 (317)
54 3e4g_A ATP synthase subunit S, 99.4 5.2E-14 1.8E-18 120.6 4.5 105 523-630 62-171 (176)
55 3un9_A NLR family member X1; l 99.4 3.6E-12 1.2E-16 126.5 16.6 179 414-598 71-262 (372)
56 1xku_A Decorin; proteoglycan, 99.4 3.5E-13 1.2E-17 132.7 8.2 180 415-610 145-329 (330)
57 2z80_A TOLL-like receptor 2, v 99.4 2E-13 6.7E-18 135.8 6.2 256 308-585 52-312 (353)
58 2z66_A Variable lymphocyte rec 99.4 4.7E-15 1.6E-19 144.5 -5.9 252 336-607 28-281 (306)
59 1xku_A Decorin; proteoglycan, 99.4 9.2E-14 3.1E-18 136.9 3.2 250 307-584 75-329 (330)
60 2z66_A Variable lymphocyte rec 99.4 3.5E-14 1.2E-18 138.3 -0.3 84 521-609 174-257 (306)
61 2ft3_A Biglycan; proteoglycan, 99.4 1.1E-13 3.8E-18 136.4 2.5 251 334-611 76-331 (332)
62 1ogq_A PGIP-2, polygalacturona 99.3 2E-14 7E-19 140.0 -4.5 255 336-614 50-305 (313)
63 2z80_A TOLL-like receptor 2, v 99.3 3.1E-12 1.1E-16 127.1 10.8 166 386-563 147-316 (353)
64 3g06_A SSPH2 (leucine-rich rep 99.3 6.4E-12 2.2E-16 132.8 13.3 266 256-596 40-305 (622)
65 2ft3_A Biglycan; proteoglycan, 99.3 1E-13 3.5E-18 136.6 -0.5 246 336-611 54-305 (332)
66 3e4g_A ATP synthase subunit S, 99.3 1.7E-12 5.8E-17 111.2 6.5 102 496-602 62-169 (176)
67 3oja_A Leucine-rich immune mol 99.3 3.1E-13 1.1E-17 139.9 1.9 193 386-608 78-270 (487)
68 3zyj_A Leucine-rich repeat-con 99.3 4.2E-13 1.4E-17 137.7 2.7 144 439-595 157-300 (440)
69 1wwl_A Monocyte differentiatio 99.3 1.9E-13 6.6E-18 133.1 -0.4 60 415-477 149-210 (312)
70 3o53_A Protein LRIM1, AGAP0063 99.3 5.8E-13 2E-17 130.1 2.9 233 355-623 27-259 (317)
71 3g06_A SSPH2 (leucine-rich rep 99.3 6.6E-12 2.3E-16 132.7 11.0 266 230-569 40-305 (622)
72 3zyi_A Leucine-rich repeat-con 99.3 5.8E-13 2E-17 137.2 2.8 91 496-593 219-309 (452)
73 4fcg_A Uncharacterized protein 99.3 2.9E-13 9.9E-18 132.6 0.2 38 415-452 150-193 (328)
74 1ozn_A Reticulon 4 receptor; N 99.3 1.1E-12 3.6E-17 126.2 3.2 212 362-592 32-243 (285)
75 3un9_A NLR family member X1; l 99.3 9.9E-11 3.4E-15 116.1 17.2 98 468-569 155-260 (372)
76 3zyi_A Leucine-rich repeat-con 99.3 7.3E-13 2.5E-17 136.4 1.1 171 438-623 143-313 (452)
77 3zyj_A Leucine-rich repeat-con 99.3 6.1E-13 2.1E-17 136.5 0.3 192 415-624 112-303 (440)
78 1h6u_A Internalin H; cell adhe 99.2 4.2E-11 1.4E-15 116.1 11.8 191 362-589 41-231 (308)
79 4glp_A Monocyte differentiatio 99.2 2.9E-12 1E-16 124.7 3.6 85 520-615 222-308 (310)
80 3oja_A Leucine-rich immune mol 99.2 6.4E-12 2.2E-16 130.0 4.4 223 360-618 32-254 (487)
81 1h6u_A Internalin H; cell adhe 99.2 1E-10 3.6E-15 113.3 12.3 194 334-563 39-232 (308)
82 4fcg_A Uncharacterized protein 99.2 9.4E-13 3.2E-17 129.0 -2.6 222 362-609 81-310 (328)
83 1ozn_A Reticulon 4 receptor; N 99.2 8E-12 2.8E-16 120.1 3.5 209 335-562 31-239 (285)
84 1ogq_A PGIP-2, polygalacturona 99.1 7E-13 2.4E-17 129.1 -5.7 231 362-614 50-281 (313)
85 1wwl_A Monocyte differentiatio 99.1 1.6E-10 5.5E-15 112.4 10.2 257 334-615 41-310 (312)
86 3rfs_A Internalin B, repeat mo 99.1 2.8E-11 9.4E-16 115.3 3.4 61 521-585 156-216 (272)
87 4glp_A Monocyte differentiatio 99.1 1.5E-10 5.3E-15 112.5 7.3 65 230-297 64-131 (310)
88 1p9a_G Platelet glycoprotein I 99.1 1.8E-11 6.2E-16 117.4 0.3 201 360-587 8-208 (290)
89 2ra8_A Uncharacterized protein 99.0 2.9E-10 1E-14 111.6 8.6 158 463-629 167-336 (362)
90 4ezg_A Putative uncharacterize 99.0 1.9E-10 6.3E-15 103.6 6.3 147 415-583 44-190 (197)
91 3rfs_A Internalin B, repeat mo 99.0 6.2E-11 2.1E-15 112.8 2.5 134 467-612 84-217 (272)
92 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 2.4E-10 8.2E-15 77.1 3.7 40 46-86 5-44 (53)
93 1h6t_A Internalin B; cell adhe 99.0 1.9E-09 6.6E-14 103.4 11.6 171 386-589 44-214 (291)
94 4ezg_A Putative uncharacterize 99.0 8.9E-10 3E-14 99.1 8.7 101 496-609 89-190 (197)
95 1h6t_A Internalin B; cell adhe 99.0 1.8E-09 6.3E-14 103.5 10.5 173 361-565 45-217 (291)
96 2o6q_A Variable lymphocyte rec 99.0 1.9E-10 6.5E-15 109.4 3.1 180 388-585 37-216 (270)
97 2ra8_A Uncharacterized protein 98.9 1.7E-08 5.7E-13 99.1 16.4 146 414-569 171-328 (362)
98 2z62_A TOLL-like receptor 4, v 98.9 1.6E-10 5.5E-15 110.3 1.4 109 467-585 123-235 (276)
99 2xwt_C Thyrotropin receptor; s 98.9 7.4E-11 2.5E-15 110.0 -2.0 205 362-612 31-238 (239)
100 1m9s_A Internalin B; cell inva 98.9 3E-09 1E-13 112.3 9.6 172 386-590 41-212 (605)
101 1io0_A Tropomodulin; LRR prote 98.9 2.9E-08 9.8E-13 87.8 14.3 126 458-585 26-162 (185)
102 1m9s_A Internalin B; cell inva 98.9 3.9E-09 1.3E-13 111.5 9.4 173 362-566 43-215 (605)
103 2o6q_A Variable lymphocyte rec 98.9 1.1E-09 3.8E-14 104.0 4.8 182 362-561 37-218 (270)
104 2z62_A TOLL-like receptor 4, v 98.9 3E-10 1E-14 108.5 0.8 159 438-611 72-235 (276)
105 2je0_A Acidic leucine-rich nuc 98.8 3.5E-09 1.2E-13 90.3 6.7 130 468-609 17-149 (149)
106 1io0_A Tropomodulin; LRR prote 98.8 7.6E-08 2.6E-12 85.0 15.3 129 485-617 27-167 (185)
107 3m19_A Variable lymphocyte rec 98.8 9.7E-10 3.3E-14 103.1 2.5 156 415-585 35-190 (251)
108 1p9a_G Platelet glycoprotein I 98.8 1.6E-09 5.5E-14 103.8 3.1 201 334-561 8-208 (290)
109 2ell_A Acidic leucine-rich nuc 98.8 2.5E-09 8.7E-14 93.4 3.6 132 468-611 24-158 (168)
110 2je0_A Acidic leucine-rich nuc 98.8 4.7E-09 1.6E-13 89.5 4.9 131 413-583 15-149 (149)
111 3m19_A Variable lymphocyte rec 98.7 7.6E-09 2.6E-13 97.0 5.1 160 388-563 35-194 (251)
112 2xwt_C Thyrotropin receptor; s 98.7 9.1E-10 3.1E-14 102.5 -2.0 165 438-615 51-219 (239)
113 1xeu_A Internalin C; cellular 98.7 1.3E-08 4.4E-13 95.9 5.8 57 521-585 127-183 (263)
114 2ell_A Acidic leucine-rich nuc 98.7 5.4E-09 1.8E-13 91.2 2.0 84 496-585 72-158 (168)
115 2v70_A SLIT-2, SLIT homolog 2 98.6 8.1E-09 2.8E-13 94.4 0.3 144 441-595 31-174 (220)
116 1xeu_A Internalin C; cellular 98.5 1E-07 3.5E-12 89.7 7.3 77 522-610 106-182 (263)
117 2xot_A Amphoterin-induced prot 98.5 2.6E-08 8.9E-13 98.8 3.2 36 415-453 39-75 (361)
118 2o6s_A Variable lymphocyte rec 98.5 1.1E-08 3.6E-13 92.9 -0.5 61 521-585 99-159 (208)
119 2v9t_B SLIT homolog 2 protein 98.5 1.6E-08 5.4E-13 92.5 -0.1 144 441-596 31-174 (220)
120 1a9n_A U2A', U2A'; complex (nu 98.5 8.3E-08 2.8E-12 84.3 4.4 85 521-610 63-150 (176)
121 3cvr_A Invasion plasmid antige 98.5 1.1E-07 3.7E-12 99.3 5.8 192 362-597 59-252 (571)
122 4ay9_X Follicle-stimulating ho 98.4 2.5E-09 8.6E-14 105.8 -7.2 186 336-536 30-215 (350)
123 1a9n_A U2A', U2A'; complex (nu 98.4 1.2E-07 4.1E-12 83.2 4.3 107 468-585 42-151 (176)
124 1dce_A Protein (RAB geranylger 98.4 1.4E-08 4.8E-13 106.5 -2.4 124 468-607 441-567 (567)
125 2v70_A SLIT-2, SLIT homolog 2 98.4 5.2E-08 1.8E-12 89.0 1.3 135 415-561 32-166 (220)
126 2v9t_B SLIT homolog 2 protein 98.4 6.3E-08 2.2E-12 88.5 1.3 134 415-561 32-165 (220)
127 3e6j_A Variable lymphocyte rec 98.3 3.2E-07 1.1E-11 84.4 4.8 82 496-585 89-170 (229)
128 2o6s_A Variable lymphocyte rec 98.3 1.1E-07 3.7E-12 86.2 1.6 86 520-611 74-159 (208)
129 2xot_A Amphoterin-induced prot 98.3 8.5E-08 2.9E-12 95.1 0.6 170 441-620 38-209 (361)
130 3cvr_A Invasion plasmid antige 98.3 6.2E-07 2.1E-11 93.6 5.8 191 336-569 59-251 (571)
131 1pgv_A TMD-1, tropomodulin TMD 98.2 1.8E-05 6.2E-10 69.1 13.7 124 458-583 31-166 (197)
132 1pgv_A TMD-1, tropomodulin TMD 98.2 1.5E-05 5E-10 69.7 12.5 124 484-609 31-166 (197)
133 2wfh_A SLIT homolog 2 protein 98.2 1.2E-07 4E-12 84.6 -1.0 118 468-596 31-148 (193)
134 3e6j_A Variable lymphocyte rec 98.2 2.4E-07 8.1E-12 85.2 0.9 108 496-613 65-172 (229)
135 1w8a_A SLIT protein; signaling 98.1 1.1E-07 3.6E-12 84.9 -2.9 137 445-595 11-147 (192)
136 3sb4_A Hypothetical leucine ri 98.1 1.2E-06 4.2E-11 85.5 4.0 125 468-606 202-327 (329)
137 2wfh_A SLIT homolog 2 protein 98.1 1.5E-06 5.1E-11 77.4 3.7 110 441-561 30-139 (193)
138 1w8a_A SLIT protein; signaling 98.1 1E-06 3.4E-11 78.5 2.1 130 418-562 11-140 (192)
139 2o6r_A Variable lymphocyte rec 98.0 6.4E-07 2.2E-11 78.7 0.2 127 444-585 9-135 (177)
140 4ay9_X Follicle-stimulating ho 98.0 1.6E-07 5.5E-12 92.7 -4.7 207 388-614 30-237 (350)
141 2e31_A FBS1, F-box only protei 98.0 1.9E-06 6.5E-11 80.1 2.7 41 46-87 47-88 (297)
142 3l2o_B F-box only protein 4; s 98.0 1.8E-06 6.2E-11 78.9 1.4 37 49-86 4-40 (312)
143 1ds9_A Outer arm dynein; leuci 97.9 1.4E-06 4.9E-11 78.0 0.7 39 521-560 114-152 (198)
144 3sb4_A Hypothetical leucine ri 97.9 8.4E-06 2.9E-10 79.5 5.8 102 149-266 25-134 (329)
145 1ds9_A Outer arm dynein; leuci 97.9 2.7E-06 9.4E-11 76.1 1.0 126 466-607 46-181 (198)
146 2o6r_A Variable lymphocyte rec 97.8 6.6E-06 2.3E-10 72.1 2.0 112 441-562 27-138 (177)
147 1dce_A Protein (RAB geranylger 97.7 1.9E-05 6.6E-10 82.7 4.3 103 467-581 462-567 (567)
148 3v7d_B Cell division control p 97.6 1.2E-05 4.1E-10 82.7 1.7 44 43-87 8-51 (464)
149 3g39_A Variable lymphocyte rec 97.5 1.9E-05 6.3E-10 68.5 0.5 83 496-585 31-113 (170)
150 4b8c_D Glucose-repressible alc 97.5 1.6E-05 5.6E-10 86.1 0.1 117 438-568 220-336 (727)
151 1p22_A F-BOX/WD-repeat protein 97.4 3.7E-05 1.3E-09 78.4 1.8 42 44-86 5-50 (435)
152 2r9u_A Variable lymphocyte rec 97.4 3.2E-05 1.1E-09 67.3 1.1 83 496-585 34-116 (174)
153 2ovr_B FBW7, F-BOX/WD repeat p 97.4 6.3E-05 2.1E-09 76.9 3.2 42 44-86 13-54 (445)
154 3g39_A Variable lymphocyte rec 97.4 3.4E-05 1.2E-09 66.9 0.9 106 496-614 10-115 (170)
155 4b8c_D Glucose-repressible alc 97.3 5.5E-05 1.9E-09 81.9 1.7 130 465-609 221-350 (727)
156 2r9u_A Variable lymphocyte rec 97.3 4.8E-05 1.6E-09 66.2 0.9 85 521-611 32-116 (174)
157 4fs7_A Uncharacterized protein 97.1 2.5E-05 8.4E-10 78.3 -3.2 78 496-583 298-375 (394)
158 3rw6_A Nuclear RNA export fact 97.1 0.0011 3.6E-08 61.4 7.4 84 520-608 168-259 (267)
159 2ifg_A High affinity nerve gro 96.9 0.00019 6.4E-09 70.5 0.8 95 496-597 32-126 (347)
160 2ifg_A High affinity nerve gro 96.7 0.00059 2E-08 66.9 2.3 89 466-562 29-117 (347)
161 3rw6_A Nuclear RNA export fact 96.0 0.011 3.8E-07 54.5 6.7 63 201-267 167-231 (267)
162 4fdw_A Leucine rich hypothetic 95.9 0.00084 2.9E-08 66.9 -1.3 237 337-609 136-379 (401)
163 4fs7_A Uncharacterized protein 95.7 0.00096 3.3E-08 66.7 -1.9 104 438-558 272-376 (394)
164 4fdw_A Leucine rich hypothetic 95.7 0.0018 6.3E-08 64.4 0.1 197 359-583 177-379 (401)
165 3rfe_A Platelet glycoprotein I 84.6 0.93 3.2E-05 36.4 4.2 37 549-587 32-68 (130)
166 4h09_A Hypothetical leucine ri 75.5 0.67 2.3E-05 45.5 0.5 129 438-583 213-342 (379)
167 4gt6_A Cell surface protein; l 70.5 0.92 3.2E-05 44.8 0.1 126 465-609 262-387 (394)
168 4gt6_A Cell surface protein; l 69.3 1.5 5.2E-05 43.2 1.4 127 437-583 260-387 (394)
169 3rfe_A Platelet glycoprotein I 60.2 3.3 0.00011 33.1 1.5 36 523-560 32-67 (130)
170 4h09_A Hypothetical leucine ri 56.0 2.4 8.2E-05 41.4 -0.0 107 438-558 236-343 (379)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=7.8e-42 Score=368.00 Aligned_cols=505 Identities=19% Similarity=0.235 Sum_probs=304.6
Q ss_pred CCCCcCCCChHHHHHHHccCCCccchhhHHHHHHHHHHHHhchhhhhhccchhhHHHHhhhcccccccccccCCCCCcce
Q 006749 46 NQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLT 125 (632)
Q Consensus 46 ~~~~~~~LP~Eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (632)
+.|.|+.||+|||.+||+||+..+|+.++++|||+|+++. .+. |..+..
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~-~~~--------------------~~~l~~---------- 50 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE-RWC--------------------RRKVFI---------- 50 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHH-HHH--------------------CCEEEE----------
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh-hhh--------------------ceEEee----------
Confidence 3578999999999999999997899999999999999983 212 111110
Q ss_pred eecCCC-CccchhhHHHHhcccCCCCcceEEecCccccC----------ccChhhHHHHhhcCCCCCeEeecCCCCCCch
Q 006749 126 RCLDGK-KATDLRLAAIAVGTSGHGGLGKLSIRGNKYTH----------GVTNFGLSAIARGCPSLKSLSLWNVPSVGDE 194 (632)
Q Consensus 126 ~~~~~~-~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~----------~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 194 (632)
... ..... .....++++++|++.++.... .....++..+...+++|++|+++++ .+++.
T Consensus 51 ---~~~~~~~~~------~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~ 120 (594)
T 2p1m_B 51 ---GNCYAVSPA------TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDD 120 (594)
T ss_dssp ---SSTTSSCHH------HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHH
T ss_pred ---ccccccCHH------HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHH
Confidence 000 00000 011234788888888763211 1123356667778899999999987 47877
Q ss_pred hHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhhCCCCcEEeccCCCCCCc---hHHHHHhhcCCCCcEEEccCCC-Ccc
Q 006749 195 GLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGN---DGLQAIGKFCRNLQCLSIKDCP-LVR 270 (632)
Q Consensus 195 ~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~L~~~~~~~~---~~~~~l~~~~~~L~~L~l~~~~-~~~ 270 (632)
.+..+...+++|++|++.+|..+++.++..+..++++|++|++++|. +++ ..+..+...+++|++|+++++. .++
T Consensus 121 ~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 199 (594)
T 2p1m_B 121 CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVS 199 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCC
T ss_pred HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCC
Confidence 77777777899999999988778888888888889999999999865 333 3344455558899999998875 455
Q ss_pred hhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCcccceecccCCCC-Ccccchhhc-ccccCCCCcceE-eccCCC
Q 006749 271 DQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPN-VSEKGFWVM-GNAQGLQKLVSL-TIASGG 347 (632)
Q Consensus 271 ~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~-~~~~~~~~L~~L-~l~~~~ 347 (632)
...+..+...++. |+.|++.++... ..+..+...+++|+.|++..+.. +....+..+ ..+.++++|+.| .+.+
T Consensus 200 ~~~l~~l~~~~~~-L~~L~L~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~-- 275 (594)
T 2p1m_B 200 FSALERLVTRCPN-LKSLKLNRAVPL-EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD-- 275 (594)
T ss_dssp HHHHHHHHHHCTT-CCEEECCTTSCH-HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBT--
T ss_pred HHHHHHHHHhCCC-CcEEecCCCCcH-HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcc--
Confidence 5666666655544 888888876221 22555556677788887765532 221111111 123456666666 2322
Q ss_pred CCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCC
Q 006749 348 GVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMG 427 (632)
Q Consensus 348 ~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 427 (632)
.....+..+...+++|++|++++|. +++..+..+...+++|++|++.+| +++.++...... +++|++|++++|..
T Consensus 276 -~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~-~~~L~~L~L~~~~~ 350 (594)
T 2p1m_B 276 -AVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLAST-CKDLRELRVFPSEP 350 (594)
T ss_dssp -CCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHH-CTTCCEEEEECSCT
T ss_pred -cchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHh-CCCCCEEEEecCcc
Confidence 2333333333345777777777765 666666666667777777777765 444444333222 35666666644320
Q ss_pred CCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecC----
Q 006749 428 IKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLS---- 503 (632)
Q Consensus 428 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~---- 503 (632)
.. ..+|..+++..+..+...+++|++|.+. |+.+++.++..+...++ +|++|+++
T Consensus 351 ~g-------------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~-~L~~L~L~~~~~ 409 (594)
T 2p1m_B 351 FV-------------------MEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRP-NMTRFRLCIIEP 409 (594)
T ss_dssp TC-------------------SSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCT-TCCEEEEEESST
T ss_pred cc-------------------cccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCC-CcceeEeecccC
Confidence 00 0223345555565565556666666443 35666666665555555 66666666
Q ss_pred -CCCCCC----hHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccE
Q 006749 504 -GCLNLT----DEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQV 578 (632)
Q Consensus 504 -~c~~l~----~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~ 578 (632)
+|+.++ +.++..+.. .+++|+.|++++ .+++.++..+...+++|+.|+|++|.+++.++..+. ..+++|++
T Consensus 410 ~~~~~l~~~~~~~~~~~l~~-~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~-~~~~~L~~ 485 (594)
T 2p1m_B 410 KAPDYLTLEPLDIGFGAIVE-HCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL-SGCDSLRK 485 (594)
T ss_dssp TCCCTTTCCCTHHHHHHHHH-HCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHH-HHCTTCCE
T ss_pred CCcccccCCchhhHHHHHHh-hCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHH-hcCCCcCE
Confidence 455565 445554444 566666666644 566666666655566666666666666666666554 35666666
Q ss_pred EeccCCCCcCcchHHHHHHhCCccccccccccCCCCHHHHHHHHhccccc
Q 006749 579 LSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESLWRC 628 (632)
Q Consensus 579 L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~l~~~ 628 (632)
|++++|+ +++..+..+...+++|++|++++|+ ++..+++.+...++.+
T Consensus 486 L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~lp~l 533 (594)
T 2p1m_B 486 LEIRDCP-FGDKALLANASKLETMRSLWMSSCS-VSFGACKLLGQKMPKL 533 (594)
T ss_dssp EEEESCS-CCHHHHHHTGGGGGGSSEEEEESSC-CBHHHHHHHHHHCTTE
T ss_pred EECcCCC-CcHHHHHHHHHhCCCCCEEeeeCCC-CCHHHHHHHHHhCCCC
Confidence 6666665 3555555444555566666666654 3666666665555544
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=3.3e-41 Score=362.76 Aligned_cols=494 Identities=18% Similarity=0.209 Sum_probs=317.7
Q ss_pred CCCChHHHHHHHccC-CCccchhhHHHHHHHHHHHHhchhhhhhccchhhHHHHhhhcccccccccccCCCCCcceeecC
Q 006749 51 DVLPDECLYEIFRRL-PSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLTRCLD 129 (632)
Q Consensus 51 ~~LP~Eil~~If~~L-~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (632)
.+||+|||.+||+|| + .+|+.++++|||+|+.+....+ ..+.... ...
T Consensus 14 ~~LPdeil~~I~~~L~~-~~d~~~~s~vck~W~~~~~~~~-~~l~~~~-----------------------------~~~ 62 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITD-PKDRDSASLVCRRWFKIDSETR-EHVTMAL-----------------------------CYT 62 (592)
T ss_dssp CCCGGGTHHHHHTTCCC-HHHHHHHTTSCHHHHHHHHHHC-CEEEESC-----------------------------GGG
T ss_pred CCCCHHHHHHHHHhcCC-HHHHHHHHHHhHHHHHhhhccc-cEEEEee-----------------------------ccc
Confidence 479999999999999 7 9999999999999999842211 1111000 000
Q ss_pred CCCccchhhHHHHhcccCCCCcceEEecCccc----------cCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHH
Q 006749 130 GKKATDLRLAAIAVGTSGHGGLGKLSIRGNKY----------THGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEI 199 (632)
Q Consensus 130 ~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~----------~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 199 (632)
. .. ......++++++|+++++.. ...+...++..+...+++|++|+++++ .+++..+..+
T Consensus 63 ---~---~~---~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l 132 (592)
T 3ogk_B 63 ---A---TP---DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRL 132 (592)
T ss_dssp ---S---CH---HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHH
T ss_pred ---c---Ch---HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHH
Confidence 0 00 01122347899999976421 123344567777788999999999987 6888777777
Q ss_pred HHhCCC-CCEeecCCCCCCCHHHHHHHHhhCCCCcEEeccCCCCCCc---hHHHHHhhcCCCCcEEEccCCCC--cchhh
Q 006749 200 AKECHL-LEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGN---DGLQAIGKFCRNLQCLSIKDCPL--VRDQG 273 (632)
Q Consensus 200 ~~~~~~-L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~L~~~~~~~~---~~~~~l~~~~~~L~~L~l~~~~~--~~~~~ 273 (632)
...+++ |++|++++|..++..++..+...+++|++|++++|. +++ ..+..+...+++|++|+++++.. +....
T Consensus 133 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~ 211 (592)
T 3ogk_B 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD 211 (592)
T ss_dssp HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHH
T ss_pred HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHH
Confidence 666666 999999998778888888888889999999999874 332 33666767799999999987653 23456
Q ss_pred HHHHHhhhhhhcccccccccccchhHHHHHhhcCcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhH
Q 006749 274 ISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVS 353 (632)
Q Consensus 274 ~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 353 (632)
+..+...++. |+.|++.++.+.+. ......+++|++|+++....... ..........+++|+.|++.+. ....
T Consensus 212 l~~~~~~~~~-L~~L~L~~~~~~~l--~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~~~~L~~L~l~~~---~~~~ 284 (592)
T 3ogk_B 212 LETIARNCRS-LVSVKVGDFEILEL--VGFFKAAANLEEFCGGSLNEDIG-MPEKYMNLVFPRKLCRLGLSYM---GPNE 284 (592)
T ss_dssp HHHHHHHCTT-CCEEECSSCBGGGG--HHHHHHCTTCCEEEECBCCCCTT-CTTSSSCCCCCTTCCEEEETTC---CTTT
T ss_pred HHHHHhhCCC-CcEEeccCccHHHH--HHHHhhhhHHHhhcccccccccc-hHHHHHHhhccccccccCcccc---chhH
Confidence 6666666655 99999999877763 34455678999999976422211 1112233456788999988864 2333
Q ss_pred HHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccc---------
Q 006749 354 LEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVK--------- 424 (632)
Q Consensus 354 ~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~--------- 424 (632)
+..+...+++|++|++++|. +++..+..+...+++|+.|++. ..+.+.++...... +++|++|++++
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~l~~~~~~-~~~L~~L~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQY-CKQLKRLRIERGADEQGMED 360 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE--GGGHHHHHHHHHHH-CTTCCEEEEECCCCSSTTSS
T ss_pred HHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc--CccCHHHHHHHHHh-CCCCCEEEeecCcccccccc
Confidence 44455667999999999976 8888887777889999999998 33555555544333 37777777774
Q ss_pred -cCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEecc---ccCCCc----hhhHHHHhhccCC
Q 006749 425 -CMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSG---LYGITD----VGIFPLLESCKAG 496 (632)
Q Consensus 425 -~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~---~~~l~~----~~~~~l~~~~~~~ 496 (632)
|..+++..... ....+++|++|++ .|..+++..+..++..+++|++|++++ ++.+++ +++..++..++ +
T Consensus 361 ~~~~~~~~~~~~-l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~-~ 437 (592)
T 3ogk_B 361 EEGLVSQRGLIA-LAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK-K 437 (592)
T ss_dssp TTCCCCHHHHHH-HHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT-T
T ss_pred ccCccCHHHHHH-HHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC-C
Confidence 44444332211 0123566666666 333455666666655556666666652 344443 34555555554 5
Q ss_pred ccEEecCCCC-CCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCC
Q 006749 497 LVKVNLSGCL-NLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 575 (632)
Q Consensus 497 L~~L~l~~c~-~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 575 (632)
|++|++++|. .+++..+..+.. .+++|+.|++++ +.+++.++..+...|++|++|+|++|.+++.++..+. ..+++
T Consensus 438 L~~L~L~~~~~~l~~~~~~~~~~-~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~l~~ 514 (592)
T 3ogk_B 438 LRRFAFYLRQGGLTDLGLSYIGQ-YSPNVRWMLLGY-VGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV-TKLPS 514 (592)
T ss_dssp CCEEEEECCGGGCCHHHHHHHHH-SCTTCCEEEECS-CCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH-HHCSS
T ss_pred CCEEEEecCCCCccHHHHHHHHH-hCccceEeeccC-CCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH-HhcCc
Confidence 6666665543 255555555554 556666666655 3565555555555566666666666666555555544 35566
Q ss_pred ccEEeccCCCCcCcchHHHHHHhCCcccc
Q 006749 576 LQVLSLSSCSEVSNKSMPALKKLGKTLVG 604 (632)
Q Consensus 576 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~ 604 (632)
|++|++++|. +++.++..+...+|.+..
T Consensus 515 L~~L~ls~n~-it~~~~~~l~~~~p~l~~ 542 (592)
T 3ogk_B 515 LRYLWVQGYR-ASMTGQDLMQMARPYWNI 542 (592)
T ss_dssp CCEEEEESCB-CCTTCTTGGGGCCTTEEE
T ss_pred cCeeECcCCc-CCHHHHHHHHHhCCCcEE
Confidence 6666666655 555555554444444433
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=8e-30 Score=274.32 Aligned_cols=411 Identities=22% Similarity=0.293 Sum_probs=308.3
Q ss_pred cCCCCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCH---HHH
Q 006749 146 SGHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISN---ESL 222 (632)
Q Consensus 146 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~---~~l 222 (632)
..+++|++|+++++ .+.+..+..+...+++|++|++.+|..+++.++..+...+++|++|++++|. +++ ..+
T Consensus 102 ~~~~~L~~L~L~~~----~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l 176 (594)
T 2p1m_B 102 SSYTWLEEIRLKRM----VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWL 176 (594)
T ss_dssp HHCTTCCEEEEESC----BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGG
T ss_pred HhCCCCCeEEeeCc----EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHH
Confidence 44689999999987 6888888888878999999999998777877888888899999999999864 332 234
Q ss_pred HHHHhhCCCCcEEeccCCC-CCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccc--cchhH
Q 006749 223 IAIAENCPNLTSLNIESCS-KIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALN--ITDFS 299 (632)
Q Consensus 223 ~~l~~~l~~L~~L~L~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~--i~~~~ 299 (632)
..+...+++|++|+++++. .++...+..+...+++|++|++++|..... +..+...++. |+.|.+..+. +....
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~--l~~~~~~~~~-L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQ-LEELGTGGYTAEVRPDV 253 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH--HHHHHHHCTT-CSEEECSBCCCCCCHHH
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH--HHHHHhcCCc-ceEcccccccCccchhh
Confidence 4455578899999999875 566777888877799999999999854433 5556655555 8888876553 23322
Q ss_pred HH---HHhhcCccccee-cccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCC
Q 006749 300 LA---VIGHYGKALTNL-VLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFV 375 (632)
Q Consensus 300 ~~---~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l 375 (632)
+. .....+++|+.+ .+.. .....+..+ ...+++|++|++++|. +++..+..+...+++|++|++.+| +
T Consensus 254 ~~~l~~~l~~~~~L~~Ls~~~~---~~~~~l~~~--~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~ 325 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLSGFWD---AVPAYLPAV--YSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--I 325 (594)
T ss_dssp HHHHHHHHHTCTTCCEEECCBT---CCGGGGGGG--HHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--G
T ss_pred HHHHHHHHhcCCCcccccCCcc---cchhhHHHH--HHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--c
Confidence 22 233567888887 3332 222222211 1256899999999998 888888888888999999999987 6
Q ss_pred ChHHHHHHHHhcCCCCeEecc--------cCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeE
Q 006749 376 SDNGLVAFSKAAGSLEILQLE--------ECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSL 447 (632)
Q Consensus 376 ~~~~l~~l~~~~~~L~~L~l~--------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 447 (632)
.+.++..+...+++|++|++. +|..+++.++..+... +++|++|
T Consensus 326 ~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~----------------------------~~~L~~L 377 (594)
T 2p1m_B 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG----------------------------CPKLESV 377 (594)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH----------------------------CTTCCEE
T ss_pred CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh----------------------------chhHHHH
Confidence 778888888889999999994 4556666666554322 3445555
Q ss_pred eccCCCCCCHHHHHHHhhcCCCCcEEEec-----cccCCC----chhhHHHHhhccCCccEEecCCCCCCChHHHHHHHh
Q 006749 448 SIRNCPGFGNASLAMLGKLCPQLQHVDLS-----GLYGIT----DVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALAR 518 (632)
Q Consensus 448 ~l~~~~~l~~~~l~~~~~~~~~L~~L~l~-----~~~~l~----~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 518 (632)
.+ +|..+++..+..++..+++|++|+++ +|+.++ +.++..++..++ +|++|++++ .+++..+..+..
T Consensus 378 ~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~L~~L~L~~--~l~~~~~~~l~~ 453 (594)
T 2p1m_B 378 LY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK-DLRRLSLSG--LLTDKVFEYIGT 453 (594)
T ss_dssp EE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT-TCCEEECCS--SCCHHHHHHHHH
T ss_pred HH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCC-CccEEeecC--cccHHHHHHHHH
Confidence 33 33456777777787778889999888 567777 677777777777 899999966 788888887776
Q ss_pred hcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHh
Q 006749 519 LHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKL 598 (632)
Q Consensus 519 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 598 (632)
.+++|+.|++++| .+++.++..+...+++|++|+|++|.+++.++..+. ..+++|++|++++|+ +++.++..+...
T Consensus 454 -~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~l~~~~-~~~~~~~~l~~~ 529 (594)
T 2p1m_B 454 -YAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA-SKLETMRSLWMSSCS-VSFGACKLLGQK 529 (594)
T ss_dssp -HCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG-GGGGGSSEEEEESSC-CBHHHHHHHHHH
T ss_pred -hchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH-HhCCCCCEEeeeCCC-CCHHHHHHHHHh
Confidence 6888999999884 688888888777789999999999988887777666 568889999999987 577777777666
Q ss_pred CCcccccccc
Q 006749 599 GKTLVGLNLQ 608 (632)
Q Consensus 599 ~~~L~~L~l~ 608 (632)
+|+|+...+.
T Consensus 530 lp~l~i~~~~ 539 (594)
T 2p1m_B 530 MPKLNVEVID 539 (594)
T ss_dssp CTTEEEEEEC
T ss_pred CCCCEEEEec
Confidence 6767544443
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=2.8e-29 Score=269.87 Aligned_cols=414 Identities=19% Similarity=0.212 Sum_probs=317.7
Q ss_pred cCCCCcceEEecCccccCccChhhHHHHhhcCCC-CCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCC---HHH
Q 006749 146 SGHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPS-LKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSIS---NES 221 (632)
Q Consensus 146 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---~~~ 221 (632)
..+++|++|+++++ .+.+..+..+...++. |++|++.+|..+.+.++..+...+++|++|++++| .++ ...
T Consensus 109 ~~~~~L~~L~L~~~----~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~ 183 (592)
T 3ogk_B 109 NNLRQLKSVHFRRM----IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES-SFSEKDGKW 183 (592)
T ss_dssp HHCTTCCEEEEESC----BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC-EEECCCSHH
T ss_pred hhCCCCCeEEeecc----EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc-cccCcchhH
Confidence 34689999999987 6888888888776776 99999999876777788888889999999999996 343 233
Q ss_pred HHHHHhhCCCCcEEeccCCCC--CCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccch--
Q 006749 222 LIAIAENCPNLTSLNIESCSK--IGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITD-- 297 (632)
Q Consensus 222 l~~l~~~l~~L~~L~L~~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~-- 297 (632)
+..+...+++|++|+++++.. +....+..+...+++|++|++++|.. . ++.......+. |+.|.+.......
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~--~l~~~~~~~~~-L~~L~l~~~~~~~~~ 259 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-L--ELVGFFKAAAN-LEEFCGGSLNEDIGM 259 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-G--GGHHHHHHCTT-CCEEEECBCCCCTTC
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-H--HHHHHHhhhhH-HHhhcccccccccch
Confidence 677888899999999987542 34567777777799999999998653 2 23444555444 8888887532221
Q ss_pred hHHHHHhhcCcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCCh
Q 006749 298 FSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSD 377 (632)
Q Consensus 298 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~ 377 (632)
.........+++|+.+++..... .... .....+++|++|++++|. +++..+..+...+++|++|++.+ .+.+
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~~~---~~l~--~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~ 331 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYMGP---NEMP--ILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGD 331 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTCCT---TTGG--GGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHH
T ss_pred HHHHHHhhccccccccCccccch---hHHH--HHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCH
Confidence 11111223457888888776421 1111 112457899999999998 88888777778899999999984 5778
Q ss_pred HHHHHHHHhcCCCCeEeccc----------CCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeE
Q 006749 378 NGLVAFSKAAGSLEILQLEE----------CNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSL 447 (632)
Q Consensus 378 ~~l~~l~~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 447 (632)
.++..+...+++|++|++.+ |..+++.++......+ ++|++|++ .|..+++...... ...+++|++|
T Consensus 332 ~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~L~~L~l-~~~~l~~~~~~~l-~~~~~~L~~L 408 (592)
T 3ogk_B 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC-QELEYMAV-YVSDITNESLESI-GTYLKNLCDF 408 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC-TTCSEEEE-EESCCCHHHHHHH-HHHCCSCCEE
T ss_pred HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC-ccCeEEEe-ecCCccHHHHHHH-HhhCCCCcEE
Confidence 88888988999999999995 8888888877665544 99999999 4455555432211 1238899999
Q ss_pred eccC---CCCCCH----HHHHHHhhcCCCCcEEEecccc-CCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhh
Q 006749 448 SIRN---CPGFGN----ASLAMLGKLCPQLQHVDLSGLY-GITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARL 519 (632)
Q Consensus 448 ~l~~---~~~l~~----~~l~~~~~~~~~L~~L~l~~~~-~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 519 (632)
++++ |..+++ ..+..+...+++|++|+++.|. .+++.++..+...++ +|++|++++| .+++.++..+..
T Consensus 409 ~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~-~L~~L~L~~n-~l~~~~~~~~~~- 485 (592)
T 3ogk_B 409 RLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP-NVRWMLLGYV-GESDEGLMEFSR- 485 (592)
T ss_dssp EEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT-TCCEEEECSC-CSSHHHHHHHHT-
T ss_pred EEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc-cceEeeccCC-CCCHHHHHHHHh-
Confidence 9973 556664 4677777789999999998765 478888888887777 8999999986 688888887777
Q ss_pred cCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCC
Q 006749 520 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSC 584 (632)
Q Consensus 520 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c 584 (632)
.+++|+.|+|++|. +++.++..+...+++|+.|+|++|++++.++..+. ..+|.++...+...
T Consensus 486 ~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~-~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 486 GCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ-MARPYWNIELIPSR 548 (592)
T ss_dssp CCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG-GCCTTEEEEEECCC
T ss_pred cCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH-HhCCCcEEEEecCc
Confidence 78999999999975 89888888888899999999999999999998888 67888887776653
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=2.7e-26 Score=238.64 Aligned_cols=417 Identities=17% Similarity=0.256 Sum_probs=260.5
Q ss_pred CCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchh---HHHHHHhCCCCCEeecCCCCCCCHHHHHHH
Q 006749 149 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEG---LLEIAKECHLLEKLELCHCPSISNESLIAI 225 (632)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l 225 (632)
+.+++|+++++ .+.+..+..+...+++|++|++++| .+.+.+ +......+++|++|++++ ..+++.++..+
T Consensus 3 ~~l~~L~Ls~~----~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l 76 (461)
T 1z7x_W 3 LDIQSLDIQCE----ELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRS-NELGDVGVHCV 76 (461)
T ss_dssp EEEEEEEEESC----CCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTT-CCCHHHHHHHH
T ss_pred ccceehhhhhc----ccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCC-CcCChHHHHHH
Confidence 57888999877 6777777776778899999999987 466654 344456779999999998 46887777777
Q ss_pred HhhCC----CCcEEeccCCCCCCchH---HHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhh---hccccccccccc
Q 006749 226 AENCP----NLTSLNIESCSKIGNDG---LQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASS---VLTRVKLQALNI 295 (632)
Q Consensus 226 ~~~l~----~L~~L~L~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~---~L~~L~L~~~~i 295 (632)
...++ +|++|++++| .+++.+ +......+++|++|+++++. +.+.+...+...... +|+.|+++++.+
T Consensus 77 ~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp HHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence 77776 6999999976 455533 23333348889999988865 555555554443211 255555555544
Q ss_pred chhHHHHHhhcCcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhh----cCCccceeecCC
Q 006749 296 TDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGK----GCLNLKQMCLRK 371 (632)
Q Consensus 296 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~L~~ 371 (632)
++.....+... +..+++|++|+++++. +.+.....+.. ..++|++|++++
T Consensus 155 ~~~~~~~l~~~-------------------------l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 155 SAASCEPLASV-------------------------LRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp BGGGHHHHHHH-------------------------HHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred CHHHHHHHHHH-------------------------HhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccC
Confidence 44332222211 1223455555555554 44444333332 234666666666
Q ss_pred CCCCChHH---HHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEe
Q 006749 372 CCFVSDNG---LVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLS 448 (632)
Q Consensus 372 ~~~l~~~~---l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 448 (632)
| .+++.+ +...+..+++|+.|+++++. +++.+...+... ....+++|++|+
T Consensus 209 n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~------------------------~~~~~~~L~~L~ 262 (461)
T 1z7x_W 209 C-GVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPG------------------------LLHPSSRLRTLW 262 (461)
T ss_dssp S-CCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHH------------------------HTSTTCCCCEEE
T ss_pred C-CCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHH------------------------HhcCCCCceEEE
Confidence 5 344333 23333455666666666642 444443322110 112456777777
Q ss_pred ccCCCCCCHHHHHHH---hhcCCCCcEEEeccccCCCchhhHHHHhhc---cCCccEEecCCCCCCChHHHHHHHhh--c
Q 006749 449 IRNCPGFGNASLAML---GKLCPQLQHVDLSGLYGITDVGIFPLLESC---KAGLVKVNLSGCLNLTDEVVLALARL--H 520 (632)
Q Consensus 449 l~~~~~l~~~~l~~~---~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~~L~~L~l~~c~~l~~~~~~~l~~~--~ 520 (632)
+++| .++......+ ...+++|++|++++ +.+++.+...+.... .++|++|++++| .+++.....+... .
T Consensus 263 L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 263 IWEC-GITAKGCGDLCRVLRAKESLKELSLAG-NELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQ 339 (461)
T ss_dssp CTTS-CCCHHHHHHHHHHHHHCTTCCEEECTT-CCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHH
T ss_pred CcCC-CCCHHHHHHHHHHHhhCCCcceEECCC-CCCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhh
Confidence 7776 4665543333 33468888888887 567766666555442 148888888886 5665543322210 4
Q ss_pred CCCCCeeeccCCCCCChHHHHHHHhc----CCCcCeEeccCCCCChhHHHhhhh--hccCCccEEeccCCCCcCcchHHH
Q 006749 521 SETLELLNLDGCRKITDASLVAIGNN----CMFLSYLDVSKCAITDMGISALSH--AEQLNLQVLSLSSCSEVSNKSMPA 594 (632)
Q Consensus 521 ~~~L~~L~l~~c~~l~~~~~~~l~~~----~~~L~~L~L~~~~i~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~ 594 (632)
+++|+.|++++ +.+++.+...+... +++|++|++++|.+++.++..+.. ..+++|++|++++|+ +++.++..
T Consensus 340 ~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~ 417 (461)
T 1z7x_W 340 NRFLLELQISN-NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQ 417 (461)
T ss_dssp CSSCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHH
T ss_pred CCCccEEEccC-CccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHH
Confidence 78899999988 47888777666542 568999999999988866555442 267889999999865 88777777
Q ss_pred HHHhCC----ccccccccccCCCC---HHHHHHHHhcccccccC
Q 006749 595 LKKLGK----TLVGLNLQNCNSIN---SSTVARLVESLWRCDIL 631 (632)
Q Consensus 595 ~~~~~~----~L~~L~l~~c~~l~---~~~~~~l~~~l~~~~~~ 631 (632)
+....+ +|+.|++.++ ... ...++.+.+..|.+.|+
T Consensus 418 l~~~l~~~~~~L~~L~~~~~-~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 418 LVESVRQPGCLLEQLVLYDI-YWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTC-CCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHhccCCcchhheeeccc-ccCHHHHHHHHHHhccCCCcEee
Confidence 665432 4777777663 333 45666677777777665
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=6.7e-25 Score=228.06 Aligned_cols=385 Identities=23% Similarity=0.338 Sum_probs=242.9
Q ss_pred CCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHH---HHHHHhhCCCCcEEeccCCCCCCchHHHHHhhc
Q 006749 178 PSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNES---LIAIAENCPNLTSLNIESCSKIGNDGLQAIGKF 254 (632)
Q Consensus 178 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~---l~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~~ 254 (632)
++|++|+++++ .+++..+..++..+++|++|++++| .+++.. +......+++|++|+++++ .+++..+..+...
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHT
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHH
Confidence 46788888875 5777777776778888999999885 577654 3444456788888888874 4666667677665
Q ss_pred CC----CCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCcccceecccCCCCCcccchhhcc
Q 006749 255 CR----NLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMG 330 (632)
Q Consensus 255 ~~----~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 330 (632)
++ +|++|++++|. +.+.++..+....
T Consensus 80 l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l------------------------------------------------- 109 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCC-LTGAGCGVLSSTL------------------------------------------------- 109 (461)
T ss_dssp TCSTTCCCCEEECTTSC-CBGGGHHHHHHHT-------------------------------------------------
T ss_pred HhhCCCceeEEEccCCC-CCHHHHHHHHHHH-------------------------------------------------
Confidence 65 68888888764 5554443333221
Q ss_pred cccCCCCcceEeccCCCCCChhHHHHHhh----cCCccceeecCCCCCCChHH---HHHHHHhcCCCCeEecccCCCcch
Q 006749 331 NAQGLQKLVSLTIASGGGVTDVSLEAMGK----GCLNLKQMCLRKCCFVSDNG---LVAFSKAAGSLEILQLEECNRVSQ 403 (632)
Q Consensus 331 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~L~~~~~l~~~~---l~~l~~~~~~L~~L~l~~~~~~~~ 403 (632)
..+++|++|+++++. +++.....+.. ..++|++|++++| .+++.+ +...+..+++|++|+++++. +++
T Consensus 110 --~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~ 184 (461)
T 1z7x_W 110 --RTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND-INE 184 (461)
T ss_dssp --TSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHH
T ss_pred --ccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC-cch
Confidence 112344444444443 33333322222 1234555555543 233322 22223334555555555433 333
Q ss_pred hhHHHHH---hcccccccEEeccccCCCCccc-cccccCCCCCCCCeEeccCCCCCCHHHHHHHhh----cCCCCcEEEe
Q 006749 404 SGILGVV---SNSASKLKSLTLVKCMGIKDMA-TEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGK----LCPQLQHVDL 475 (632)
Q Consensus 404 ~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~----~~~~L~~L~l 475 (632)
.+...+. ....++|++|++++|....... .....+..+++|++|++++|. +++.....++. .+++|++|++
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEEC
Confidence 3322221 1122355555555543221100 001123357888888888874 66666555443 4789999999
Q ss_pred ccccCCCchhhHHH---HhhccCCccEEecCCCCCCChHHHHHHHhh---cCCCCCeeeccCCCCCChHHHHHH---Hhc
Q 006749 476 SGLYGITDVGIFPL---LESCKAGLVKVNLSGCLNLTDEVVLALARL---HSETLELLNLDGCRKITDASLVAI---GNN 546 (632)
Q Consensus 476 ~~~~~l~~~~~~~l---~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~~L~~L~l~~c~~l~~~~~~~l---~~~ 546 (632)
++| .+++.++..+ +..++ +|++|+++++ .+++.+...+... ..++|+.|++++| .+++.+...+ ...
T Consensus 264 ~~n-~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 264 WEC-GITAKGCGDLCRVLRAKE-SLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQ 339 (461)
T ss_dssp TTS-CCCHHHHHHHHHHHHHCT-TCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHHhhCC-CcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhh
Confidence 994 8888775444 34455 9999999995 7887777666651 2269999999995 7877654444 345
Q ss_pred CCCcCeEeccCCCCChhHHHhhhhh---ccCCccEEeccCCCCcCcchHHH---HHHhCCccccccccccCCCCHHHHHH
Q 006749 547 CMFLSYLDVSKCAITDMGISALSHA---EQLNLQVLSLSSCSEVSNKSMPA---LKKLGKTLVGLNLQNCNSINSSTVAR 620 (632)
Q Consensus 547 ~~~L~~L~L~~~~i~~~~~~~l~~~---~~~~L~~L~l~~c~~l~~~~~~~---~~~~~~~L~~L~l~~c~~l~~~~~~~ 620 (632)
+++|++|++++|.+++.++..+... ..++|++|++++|. +++.+... ....+++|++|++++ +.+++.++..
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~-N~i~~~~~~~ 417 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSN-NCLGDAGILQ 417 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCS-SSCCHHHHHH
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCC-CCCCHHHHHH
Confidence 8999999999999999888777621 26799999999975 87644333 334478899999999 5899999999
Q ss_pred HHhcccc
Q 006749 621 LVESLWR 627 (632)
Q Consensus 621 l~~~l~~ 627 (632)
+.+.++.
T Consensus 418 l~~~l~~ 424 (461)
T 1z7x_W 418 LVESVRQ 424 (461)
T ss_dssp HHHHHTS
T ss_pred HHHHhcc
Confidence 9876643
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.94 E-value=3.6e-26 Score=226.99 Aligned_cols=232 Identities=19% Similarity=0.221 Sum_probs=138.0
Q ss_pred CCCCcCCCChHHHHHHHccCCCccchhhHHHHHHHHHHHHhchhhhhhccchhhHHHHhhhcccccccccccCCCCCcce
Q 006749 46 NQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLT 125 (632)
Q Consensus 46 ~~~~~~~LP~Eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (632)
....|++||+||+.+||+||+ .+|+.++++|||+|++++.. + ..|
T Consensus 5 ~~~~~~~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~~-~------------------~~~--------------- 49 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASD-E------------------SLW--------------- 49 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHTC-S------------------TTS---------------
T ss_pred ccCChhhCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcC-c------------------hhh---------------
Confidence 456799999999999999999 99999999999999998632 1 223
Q ss_pred eecCCCCccchhhHHHHhcccCCCCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCC
Q 006749 126 RCLDGKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHL 205 (632)
Q Consensus 126 ~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 205 (632)
++++++++ .+.+..+..+. .++++.|++.++ .+...... ...+++
T Consensus 50 --------------------------~~l~l~~~----~~~~~~~~~~~--~~~l~~L~l~~n-~l~~~~~~--~~~~~~ 94 (336)
T 2ast_B 50 --------------------------QTLDLTGK----NLHPDVTGRLL--SQGVIAFRCPRS-FMDQPLAE--HFSPFR 94 (336)
T ss_dssp --------------------------SEEECTTC----BCCHHHHHHHH--HTTCSEEECTTC-EECSCCCS--CCCCBC
T ss_pred --------------------------eeeccccc----cCCHHHHHhhh--hccceEEEcCCc-cccccchh--hccCCC
Confidence 33344333 22222222221 145666666553 22211111 114567
Q ss_pred CCEeecCCCCCCCHHHHHHHHhhCCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhc
Q 006749 206 LEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVL 285 (632)
Q Consensus 206 L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L 285 (632)
|++|+++++ .++...+..+...+++|++|++++| .+++..+..+.. +++|++|++++|..+++.++......
T Consensus 95 L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~----- 166 (336)
T 2ast_B 95 VQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSS----- 166 (336)
T ss_dssp CCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHH-----
T ss_pred CCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhc-----
Confidence 777777774 4666556666666777777777765 355555555655 67777777776644443333322211
Q ss_pred ccccccccccchhHHHHHhhcCcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCC-cc
Q 006749 286 TRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCL-NL 364 (632)
Q Consensus 286 ~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-~L 364 (632)
+++|++|++++|..+++..+......++ +|
T Consensus 167 -------------------------------------------------~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 167 -------------------------------------------------CSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp -------------------------------------------------CTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred -------------------------------------------------CCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 3455555555553355544445555566 77
Q ss_pred ceeecCCCC-CCChHHHHHHHHhcCCCCeEecccCCCcchh
Q 006749 365 KQMCLRKCC-FVSDNGLVAFSKAAGSLEILQLEECNRVSQS 404 (632)
Q Consensus 365 ~~L~L~~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 404 (632)
++|++++|. .+++..+......+++|+.|++++|..+++.
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 238 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 238 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH
Confidence 777777664 4666666666666777777777766544443
No 8
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=6.3e-23 Score=218.13 Aligned_cols=437 Identities=15% Similarity=0.090 Sum_probs=241.1
Q ss_pred CCCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHh
Q 006749 148 HGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAE 227 (632)
Q Consensus 148 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 227 (632)
.++|++|+++++. +.......+ ..+++|++|+++++ .+....... +..+++|++|+++++ .++....+....
T Consensus 49 l~~L~~L~Ls~n~----i~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 120 (549)
T 2z81_A 49 CANLQVLILKSSR----INTIEGDAF-YSLGSLEHLDLSDN-HLSSLSSSW-FGPLSSLKYLNLMGN-PYQTLGVTSLFP 120 (549)
T ss_dssp CTTCCEEECTTSC----CCEECTTTT-TTCTTCCEEECTTS-CCCSCCHHH-HTTCTTCCEEECTTC-CCSSSCSSCSCT
T ss_pred CCcccEEECCCCC----cCccChhhc-cccccCCEEECCCC-ccCccCHHH-hccCCCCcEEECCCC-cccccchhhhhh
Confidence 3677777777652 222111111 24667777777765 344333222 346677777777764 333211122234
Q ss_pred hCCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcC
Q 006749 228 NCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYG 307 (632)
Q Consensus 228 ~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~ 307 (632)
++++|++|+++++..+.......+.. +++|++|+++++. +.......+ .... +|+.|.+..+.+.... ..+...+
T Consensus 121 ~l~~L~~L~L~~n~~~~~~~~~~~~~-l~~L~~L~L~~n~-l~~~~~~~l-~~l~-~L~~L~l~~n~~~~~~-~~~~~~l 195 (549)
T 2z81_A 121 NLTNLQTLRIGNVETFSEIRRIDFAG-LTSLNELEIKALS-LRNYQSQSL-KSIR-DIHHLTLHLSESAFLL-EIFADIL 195 (549)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTT-CCEEEEEEEEETT-CCEECTTTT-TTCS-EEEEEEEECSBSTTHH-HHHHHST
T ss_pred ccCCccEEECCCCccccccCHhhhhc-ccccCeeeccCCc-ccccChhhh-hccc-cCceEecccCcccccc-hhhHhhc
Confidence 56777777777654333322223333 6777777776654 221111111 1111 2666666666554332 2233446
Q ss_pred cccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHh---hcCCccceeecCCCCC----------
Q 006749 308 KALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMG---KGCLNLKQMCLRKCCF---------- 374 (632)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~~---------- 374 (632)
++|+.|+++++. +....+........+++|+.|+++++. +.+.....+. ..+++|+.|++.+|..
T Consensus 196 ~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 273 (549)
T 2z81_A 196 SSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273 (549)
T ss_dssp TTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESCE-EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT
T ss_pred ccccEEEccCCc-cccccccccchhhhhhcccceeccccc-cchhHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 778888877763 222111111122345667777776654 4443333332 2334555555544321
Q ss_pred -------------------CCh----HHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCcc
Q 006749 375 -------------------VSD----NGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDM 431 (632)
Q Consensus 375 -------------------l~~----~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 431 (632)
+.. ..+..+....++|+.|+++++. +...+. .+...+++|++|++++|......
T Consensus 274 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~--~~~~~l~~L~~L~Ls~N~l~~~~ 350 (549)
T 2z81_A 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPC--SFSQHLKSLEFLDLSENLMVEEY 350 (549)
T ss_dssp TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCH--HHHHHCTTCCEEECCSSCCCHHH
T ss_pred hhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCH--HHHhcCccccEEEccCCcccccc
Confidence 110 0111223345778888887754 332221 11122489999999987644322
Q ss_pred ccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChH
Q 006749 432 ATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDE 511 (632)
Q Consensus 432 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~ 511 (632)
......+..+++|++|++++|..-...........+++|++|+++++ .++. +...+... ++|++|++++| .++..
T Consensus 351 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~~-~~L~~L~Ls~N-~l~~l 425 (549)
T 2z81_A 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHP--MPDSCQWP-EKMRFLNLSST-GIRVV 425 (549)
T ss_dssp HHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCC--CCSCCCCC-TTCCEEECTTS-CCSCC
T ss_pred ccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCcc--CChhhccc-ccccEEECCCC-Ccccc
Confidence 21122346789999999999864332223344566799999999984 4441 22122223 38999999986 44421
Q ss_pred HHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcch
Q 006749 512 VVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKS 591 (632)
Q Consensus 512 ~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~ 591 (632)
.. . ..++|+.|++++| .++.. ...+++|++|+|++|+++. +.... .+++|++|++++|. ++...
T Consensus 426 ~~----~-~~~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L~Ls~N~l~~--ip~~~--~l~~L~~L~Ls~N~-l~~~~ 489 (549)
T 2z81_A 426 KT----C-IPQTLEVLDVSNN-NLDSF-----SLFLPRLQELYISRNKLKT--LPDAS--LFPVLLVMKISRNQ-LKSVP 489 (549)
T ss_dssp CT----T-SCTTCSEEECCSS-CCSCC-----CCCCTTCCEEECCSSCCSS--CCCGG--GCTTCCEEECCSSC-CCCCC
T ss_pred cc----h-hcCCceEEECCCC-Chhhh-----cccCChhcEEECCCCccCc--CCCcc--cCccCCEEecCCCc-cCCcC
Confidence 11 0 2368999999984 66653 2469999999999998874 22223 67899999999965 76543
Q ss_pred HHHHHHhCCccccccccccCCCCHHH-HHHHHhc
Q 006749 592 MPALKKLGKTLVGLNLQNCNSINSST-VARLVES 624 (632)
Q Consensus 592 ~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~l~~~ 624 (632)
... ...+++|+.|++++|+-..+.. ...+.++
T Consensus 490 ~~~-~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~ 522 (549)
T 2z81_A 490 DGI-FDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 522 (549)
T ss_dssp TTG-GGGCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred HHH-HhcCcccCEEEecCCCccCCCccHHHHHHH
Confidence 333 3446679999999977666655 3444333
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=1.2e-23 Score=226.55 Aligned_cols=312 Identities=18% Similarity=0.136 Sum_probs=178.4
Q ss_pred cccccccccccchhHHHHHhhcCcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCcc
Q 006749 285 LTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNL 364 (632)
Q Consensus 285 L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 364 (632)
++.|+++++.+.+.....+ ..+++|+.|+++++.. ... ...+..+++|++|+++++. +..... .....+++|
T Consensus 256 L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l-~~l----p~~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L 327 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTF-HCFSGLQELDLTATHL-SEL----PSGLVGLSTLKKLVLSANK-FENLCQ-ISASNFPSL 327 (606)
T ss_dssp EEEEECTTCCCSSCCTTTT-TTCTTCSEEECTTSCC-SCC----CSSCCSCTTCCEEECTTCC-CSBGGG-GCGGGCTTC
T ss_pred eeEEEeecCccCccCHHHh-ccccCCCEEeccCCcc-CCC----ChhhcccccCCEEECccCC-cCcCch-hhhhccCcC
Confidence 4444444444433222111 2346666776666532 110 0112456777777777765 333221 122345778
Q ss_pred ceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCC
Q 006749 365 KQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSL 444 (632)
Q Consensus 365 ~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 444 (632)
++|+++++...... ....+..+++|+.|+++++. +............+++|++|++++|.... .....+..+++|
T Consensus 328 ~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L 402 (606)
T 3t6q_A 328 THLSIKGNTKRLEL-GTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLS---LKTEAFKECPQL 402 (606)
T ss_dssp SEEECCSCSSCCBC-CSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEE---ECTTTTTTCTTC
T ss_pred CEEECCCCCccccc-chhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCc---CCHHHhcCCccC
Confidence 88887775321111 01112356778888887754 22221000111223788888888764321 112335567888
Q ss_pred CeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHH---HHHHhhcC
Q 006749 445 RSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVV---LALARLHS 521 (632)
Q Consensus 445 ~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~---~~l~~~~~ 521 (632)
++|++++|.... .........+++|++|+++++ .++.... ..+..++ +|++|++++| .+.+..+ ..+. .+
T Consensus 403 ~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~-~L~~L~L~~n-~l~~~~~~~~~~~~--~l 475 (606)
T 3t6q_A 403 ELLDLAFTRLKV-KDAQSPFQNLHLLKVLNLSHS-LLDISSE-QLFDGLP-ALQHLNLQGN-HFPKGNIQKTNSLQ--TL 475 (606)
T ss_dssp SEEECTTCCEEC-CTTCCTTTTCTTCCEEECTTC-CCBTTCT-TTTTTCT-TCCEEECTTC-BCGGGEECSSCGGG--GC
T ss_pred CeEECCCCcCCC-cccchhhhCcccCCEEECCCC-ccCCcCH-HHHhCCC-CCCEEECCCC-CCCccccccchhhc--cC
Confidence 888888875221 111112334688999999874 3432211 1223344 8999999986 4443211 1122 48
Q ss_pred CCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCc
Q 006749 522 ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKT 601 (632)
Q Consensus 522 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 601 (632)
++|+.|++++| .++......+ ..+++|++|+|++|+++......+. .++.| .|++++|. ++......+. .+++
T Consensus 476 ~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~~L-~L~L~~N~-l~~~~~~~~~-~l~~ 548 (606)
T 3t6q_A 476 GRLEILVLSFC-DLSSIDQHAF-TSLKMMNHVDLSHNRLTSSSIEALS--HLKGI-YLNLASNH-ISIILPSLLP-ILSQ 548 (606)
T ss_dssp TTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCCGGGGGGGT--TCCSC-EEECCSSC-CCCCCGGGHH-HHHT
T ss_pred CCccEEECCCC-ccCccChhhh-ccccCCCEEECCCCccCcCChhHhC--ccccc-EEECcCCc-ccccCHhhcc-cCCC
Confidence 89999999984 6765443333 3489999999999999887777766 78889 99999965 7654444334 3557
Q ss_pred cccccccccCCCCHHHHHHHHh
Q 006749 602 LVGLNLQNCNSINSSTVARLVE 623 (632)
Q Consensus 602 L~~L~l~~c~~l~~~~~~~l~~ 623 (632)
|+.|++++|+-..+....++.+
T Consensus 549 L~~L~l~~N~~~c~c~~~~~~~ 570 (606)
T 3t6q_A 549 QRTINLRQNPLDCTCSNIYFLE 570 (606)
T ss_dssp SSEEECTTCCEECSGGGHHHHH
T ss_pred CCEEeCCCCCccccCCcHHHHH
Confidence 9999999977655555444433
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=1.9e-23 Score=224.92 Aligned_cols=261 Identities=20% Similarity=0.154 Sum_probs=145.0
Q ss_pred cCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhc
Q 006749 333 QGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSN 412 (632)
Q Consensus 333 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 412 (632)
..+++|++|+++++. +...+ .....+++|++|+++++. +.... ...+..+++|+.|+++++........ . ...
T Consensus 275 ~~l~~L~~L~l~~n~-l~~lp--~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~-~-~~~ 347 (606)
T 3t6q_A 275 HCFSGLQELDLTATH-LSELP--SGLVGLSTLKKLVLSANK-FENLC-QISASNFPSLTHLSIKGNTKRLELGT-G-CLE 347 (606)
T ss_dssp TTCTTCSEEECTTSC-CSCCC--SSCCSCTTCCEEECTTCC-CSBGG-GGCGGGCTTCSEEECCSCSSCCBCCS-S-TTT
T ss_pred ccccCCCEEeccCCc-cCCCC--hhhcccccCCEEECccCC-cCcCc-hhhhhccCcCCEEECCCCCcccccch-h-hhh
Confidence 345667777776654 33211 112345677777776653 32211 11223567777777776542211110 0 011
Q ss_pred ccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhh
Q 006749 413 SASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLES 492 (632)
Q Consensus 413 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 492 (632)
.+++|++|+++++.. .........+..+++|++|++++|.. ....... ...+++|++|+++++ .+........+..
T Consensus 348 ~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 348 NLENLRELDLSHDDI-ETSDCCNLQLRNLSHLQSLNLSYNEP-LSLKTEA-FKECPQLELLDLAFT-RLKVKDAQSPFQN 423 (606)
T ss_dssp TCTTCCEEECCSSCC-CEEEESTTTTTTCTTCCEEECCSCSC-EEECTTT-TTTCTTCSEEECTTC-CEECCTTCCTTTT
T ss_pred ccCcCCEEECCCCcc-ccccCcchhcccCCCCCEEECCCCcC-CcCCHHH-hcCCccCCeEECCCC-cCCCcccchhhhC
Confidence 236777777777542 22221123356678888888887742 2111111 224578888888773 3332222222233
Q ss_pred ccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHH--HHHhcCCCcCeEeccCCCCChhHHHhhhh
Q 006749 493 CKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLV--AIGNNCMFLSYLDVSKCAITDMGISALSH 570 (632)
Q Consensus 493 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~--~l~~~~~~L~~L~L~~~~i~~~~~~~l~~ 570 (632)
++ +|++|++++| .+.......+. .+++|+.|++++| .+++..+. .....+++|+.|++++|.++......+.
T Consensus 424 l~-~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~- 497 (606)
T 3t6q_A 424 LH-LLKVLNLSHS-LLDISSEQLFD--GLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT- 497 (606)
T ss_dssp CT-TCCEEECTTC-CCBTTCTTTTT--TCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTT-
T ss_pred cc-cCCEEECCCC-ccCCcCHHHHh--CCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCccCccChhhhc-
Confidence 33 7888888885 44433333233 4788888888884 55442111 1234588899999999888765555555
Q ss_pred hccCCccEEeccCCCCcCcchHHHHHHhCCccccccccccCCCCH
Q 006749 571 AEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINS 615 (632)
Q Consensus 571 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 615 (632)
.+++|+.|++++|. ++......+. ..++| .|++++ ++++.
T Consensus 498 -~l~~L~~L~Ls~N~-l~~~~~~~l~-~l~~L-~L~L~~-N~l~~ 537 (606)
T 3t6q_A 498 -SLKMMNHVDLSHNR-LTSSSIEALS-HLKGI-YLNLAS-NHISI 537 (606)
T ss_dssp -TCTTCCEEECCSSC-CCGGGGGGGT-TCCSC-EEECCS-SCCCC
T ss_pred -cccCCCEEECCCCc-cCcCChhHhC-ccccc-EEECcC-Ccccc
Confidence 77889999999865 7655444433 34567 888888 45553
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1.5e-23 Score=225.66 Aligned_cols=267 Identities=17% Similarity=0.101 Sum_probs=169.2
Q ss_pred cCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhc
Q 006749 333 QGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSN 412 (632)
Q Consensus 333 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 412 (632)
..+++|++|+++++. +...+ .+ .+++|++|+++++..+... -...+++|+.|+++++. ++..+.......
T Consensus 304 ~~~~~L~~L~l~~n~-l~~lp--~~--~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~ 373 (606)
T 3vq2_A 304 PKHFKWQSLSIIRCQ-LKQFP--TL--DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRNA-LSFSGCCSYSDL 373 (606)
T ss_dssp CTTCCCSEEEEESCC-CSSCC--CC--CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSSC-EEEEEECCHHHH
T ss_pred cccccCCEEEccccc-Ccccc--cC--CCCccceeeccCCcCccch----hhccCCCCCEEECcCCc-cCCCcchhhhhc
Confidence 445677777777765 23222 22 5677888888776433322 11256788888888754 332210011112
Q ss_pred ccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhh
Q 006749 413 SASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLES 492 (632)
Q Consensus 413 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 492 (632)
.+++|++|++++|. +..+ ...+..+++|++|++++|........ .....+++|++|+++++ .++... ...+..
T Consensus 374 ~~~~L~~L~L~~n~-l~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~ 446 (606)
T 3vq2_A 374 GTNSLRHLDLSFNG-AIIM---SANFMGLEELQHLDFQHSTLKRVTEF-SAFLSLEKLLYLDISYT-NTKIDF-DGIFLG 446 (606)
T ss_dssp CCSCCCEEECCSCS-EEEE---CCCCTTCTTCCEEECTTSEEESTTTT-TTTTTCTTCCEEECTTS-CCEECC-TTTTTT
T ss_pred cCCcccEeECCCCc-cccc---hhhccCCCCCCeeECCCCccCCccCh-hhhhccccCCEEECcCC-CCCccc-hhhhcC
Confidence 34889999998865 2222 24466789999999998853222111 12335689999999984 343211 112233
Q ss_pred ccCCccEEecCCCCCCChH-HHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhh
Q 006749 493 CKAGLVKVNLSGCLNLTDE-VVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHA 571 (632)
Q Consensus 493 ~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 571 (632)
++ +|++|++++| .+.+. ....+. .+++|+.|++++| .++......+ ..+++|++|+|++|++++.....+.
T Consensus 447 l~-~L~~L~l~~n-~l~~~~~~~~~~--~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~-- 518 (606)
T 3vq2_A 447 LT-SLNTLKMAGN-SFKDNTLSNVFA--NTTNLTFLDLSKC-QLEQISWGVF-DTLHRLQLLNMSHNNLLFLDSSHYN-- 518 (606)
T ss_dssp CT-TCCEEECTTC-EEGGGEECSCCT--TCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCSCEEGGGTT--
T ss_pred CC-CCCEEECCCC-cCCCcchHHhhc--cCCCCCEEECCCC-cCCccChhhh-cccccCCEEECCCCcCCCcCHHHcc--
Confidence 44 8999999986 44432 112122 4799999999994 7765443333 3589999999999998876555555
Q ss_pred ccCCccEEeccCCCCcCcchHHHHHHhCCccccccccccCCCCHHHHHHHHhccc
Q 006749 572 EQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESLW 626 (632)
Q Consensus 572 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~l~ 626 (632)
.+++|++|++++|. ++.... .+...+++|++|++++++-..+....++.+++.
T Consensus 519 ~l~~L~~L~l~~N~-l~~~p~-~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~ 571 (606)
T 3vq2_A 519 QLYSLSTLDCSFNR-IETSKG-ILQHFPKSLAFFNLTNNSVACICEHQKFLQWVK 571 (606)
T ss_dssp TCTTCCEEECTTSC-CCCEES-CGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTT
T ss_pred CCCcCCEEECCCCc-CcccCH-hHhhhcccCcEEEccCCCcccCCccHHHHHHHH
Confidence 78899999999976 753322 244445579999999977777777777777764
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=2.4e-23 Score=229.13 Aligned_cols=156 Identities=19% Similarity=0.073 Sum_probs=75.4
Q ss_pred ccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhcc
Q 006749 415 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 494 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 494 (632)
++|++|++++|.....+ +..+..+++|++|++++|.. ....... ...+++|+.|+++++ .+..... ..+..++
T Consensus 394 ~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~Ls~N~l-~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p-~~~~~l~ 466 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKI---PPTLSNCSELVSLHLSFNYL-SGTIPSS-LGSLSKLRDLKLWLN-MLEGEIP-QELMYVK 466 (768)
T ss_dssp CCCCEEECCSSEEEEEC---CGGGGGCTTCCEEECCSSEE-ESCCCGG-GGGCTTCCEEECCSS-CCCSCCC-GGGGGCT
T ss_pred CCccEEECCCCcccccc---CHHHhcCCCCCEEECcCCcc-cCcccHH-HhcCCCCCEEECCCC-cccCcCC-HHHcCCC
Confidence 45566666554322111 22244566666666666531 1111111 123466666666663 2321111 1112222
Q ss_pred CCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccC
Q 006749 495 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQL 574 (632)
Q Consensus 495 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 574 (632)
+|++|++++| .++......+. .+++|+.|++++| .++......+ ..+++|+.|+|++|.++......+. .++
T Consensus 467 -~L~~L~L~~N-~l~~~~p~~l~--~l~~L~~L~L~~N-~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~--~l~ 538 (768)
T 3rgz_A 467 -TLETLILDFN-DLTGEIPSGLS--NCTNLNWISLSNN-RLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELG--DCR 538 (768)
T ss_dssp -TCCEEECCSS-CCCSCCCGGGG--GCTTCCEEECCSS-CCCSCCCGGG-GGCTTCCEEECCSSCCEEECCGGGG--GCT
T ss_pred -CceEEEecCC-cccCcCCHHHh--cCCCCCEEEccCC-ccCCcCChHH-hcCCCCCEEECCCCcccCcCCHHHc--CCC
Confidence 6777777664 33322222222 3666777777663 4443222222 2366777777777766544333444 566
Q ss_pred CccEEeccCCC
Q 006749 575 NLQVLSLSSCS 585 (632)
Q Consensus 575 ~L~~L~l~~c~ 585 (632)
+|+.|++++|+
T Consensus 539 ~L~~L~Ls~N~ 549 (768)
T 3rgz_A 539 SLIWLDLNTNL 549 (768)
T ss_dssp TCCEEECCSSE
T ss_pred CCCEEECCCCc
Confidence 67777776654
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=5.7e-24 Score=234.07 Aligned_cols=425 Identities=20% Similarity=0.177 Sum_probs=224.0
Q ss_pred CCCcceEEecCccccCccChhhHH-HHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHH--
Q 006749 148 HGGLGKLSIRGNKYTHGVTNFGLS-AIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIA-- 224 (632)
Q Consensus 148 ~~~L~~L~l~~~~~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~-- 224 (632)
.++|++|+++++. +...... .....+++|++|+++++. +.......+...+++|++|+++++ .++......
T Consensus 99 l~~L~~L~Ls~n~----l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 172 (768)
T 3rgz_A 99 SASLTSLDLSRNS----LSGPVTTLTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWV 172 (768)
T ss_dssp CTTCCEEECCSSE----EEEEGGGGGGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHH
T ss_pred CCCCCEEECCCCc----CCCcCCChHHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhh
Confidence 4677777777652 2211111 012356777777777652 221111111135667777777764 343221111
Q ss_pred HHhhCCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHh
Q 006749 225 IAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIG 304 (632)
Q Consensus 225 l~~~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~ 304 (632)
...++++|++|+++++.-..... + ..+++|++|+++++........ ....+ +|+.|+++++.+.+.....+
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~---~-~~l~~L~~L~Ls~n~l~~~~~~---l~~l~-~L~~L~Ls~n~l~~~~~~~l- 243 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVD---V-SRCVNLEFLDVSSNNFSTGIPF---LGDCS-ALQHLDISGNKLSGDFSRAI- 243 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCB---C-TTCTTCCEEECCSSCCCSCCCB---CTTCC-SCCEEECCSSCCCSCHHHHT-
T ss_pred hhccCCCCCEEECCCCcccccCC---c-ccCCcCCEEECcCCcCCCCCcc---cccCC-CCCEEECcCCcCCCcccHHH-
Confidence 13456777777777643211111 1 2366777777766542211111 12222 26777777776665444333
Q ss_pred hcCcccceecccCCCCCcccchh-----------------hc-ccc-cCCCCcceEeccCCCCCChhHHHHHhhcCCccc
Q 006749 305 HYGKALTNLVLSDLPNVSEKGFW-----------------VM-GNA-QGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLK 365 (632)
Q Consensus 305 ~~~~~L~~L~l~~~~~~~~~~~~-----------------~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 365 (632)
..+++|+.|+++++......... .+ ... ..+++|++|+++++. +.... ......+++|+
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~~-p~~~~~l~~L~ 321 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH-FYGAV-PPFFGSCSLLE 321 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE-EEECC-CGGGGGCTTCC
T ss_pred hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc-CCCcc-chHHhcCCCcc
Confidence 33566666666665321110000 00 000 112556666666553 21111 11123456677
Q ss_pred eeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcc--hhhHHHHHhcccccccEEeccccCCCCccccccccCC--CC
Q 006749 366 QMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVS--QSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLS--PN 441 (632)
Q Consensus 366 ~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~ 441 (632)
+|+++++. +........+..+++|+.|+++++.-.. ...+... .++|+.|++++|...... +..+. .+
T Consensus 322 ~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l----~~~L~~L~Ls~N~l~~~~---~~~~~~~~~ 393 (768)
T 3rgz_A 322 SLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL----SASLLTLDLSSNNFSGPI---LPNLCQNPK 393 (768)
T ss_dssp EEECCSSE-EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH----TTTCSEEECCSSEEEEEC---CTTTTCSTT
T ss_pred EEECCCCc-ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh----hcCCcEEEccCCCcCCCc---Chhhhhccc
Confidence 77776653 2211111223356777777776654210 1112221 137777777775432222 11122 26
Q ss_pred CCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcC
Q 006749 442 CSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHS 521 (632)
Q Consensus 442 ~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 521 (632)
++|++|++++|.. .... ......+++|++|+++++ .++... ...+..++ +|+.|++++| .+.......+. .+
T Consensus 394 ~~L~~L~L~~n~l-~~~~-p~~l~~l~~L~~L~Ls~N-~l~~~~-p~~l~~l~-~L~~L~L~~n-~l~~~~p~~~~--~l 465 (768)
T 3rgz_A 394 NTLQELYLQNNGF-TGKI-PPTLSNCSELVSLHLSFN-YLSGTI-PSSLGSLS-KLRDLKLWLN-MLEGEIPQELM--YV 465 (768)
T ss_dssp CCCCEEECCSSEE-EEEC-CGGGGGCTTCCEEECCSS-EEESCC-CGGGGGCT-TCCEEECCSS-CCCSCCCGGGG--GC
T ss_pred CCccEEECCCCcc-cccc-CHHHhcCCCCCEEECcCC-cccCcc-cHHHhcCC-CCCEEECCCC-cccCcCCHHHc--CC
Confidence 7899999988752 2111 112235689999999884 332211 11223344 8999999986 45433333333 48
Q ss_pred CCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCc
Q 006749 522 ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKT 601 (632)
Q Consensus 522 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 601 (632)
++|+.|++++| .++......+ ..+++|++|+|++|++++.....+. .+++|++|++++|. ++...... ...+++
T Consensus 466 ~~L~~L~L~~N-~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~-l~~~~p~~-l~~l~~ 539 (768)
T 3rgz_A 466 KTLETLILDFN-DLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIG--RLENLAILKLSNNS-FSGNIPAE-LGDCRS 539 (768)
T ss_dssp TTCCEEECCSS-CCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSC-CEEECCGG-GGGCTT
T ss_pred CCceEEEecCC-cccCcCCHHH-hcCCCCCEEEccCCccCCcCChHHh--cCCCCCEEECCCCc-ccCcCCHH-HcCCCC
Confidence 89999999984 6654332233 3589999999999998865555555 78899999999976 64333333 445678
Q ss_pred cccccccccC
Q 006749 602 LVGLNLQNCN 611 (632)
Q Consensus 602 L~~L~l~~c~ 611 (632)
|+.|++++|+
T Consensus 540 L~~L~Ls~N~ 549 (768)
T 3rgz_A 540 LIWLDLNTNL 549 (768)
T ss_dssp CCEEECCSSE
T ss_pred CCEEECCCCc
Confidence 9999999864
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=1.5e-23 Score=225.82 Aligned_cols=254 Identities=17% Similarity=0.129 Sum_probs=148.8
Q ss_pred cCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhc
Q 006749 333 QGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSN 412 (632)
Q Consensus 333 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 412 (632)
..+++|+.|+++++. +.... ....+++|++|++++|.. .. +..+ .+++|+.|+++++....... ..
T Consensus 282 ~~l~~L~~L~l~~~~-~~~l~---~l~~~~~L~~L~l~~n~l-~~--lp~~--~l~~L~~L~l~~n~~~~~~~-----~~ 347 (606)
T 3vq2_A 282 HCLANVSAMSLAGVS-IKYLE---DVPKHFKWQSLSIIRCQL-KQ--FPTL--DLPFLKSLTLTMNKGSISFK-----KV 347 (606)
T ss_dssp GGGTTCSEEEEESCC-CCCCC---CCCTTCCCSEEEEESCCC-SS--CCCC--CCSSCCEEEEESCSSCEECC-----CC
T ss_pred ccCCCCCEEEecCcc-chhhh---hccccccCCEEEcccccC-cc--cccC--CCCccceeeccCCcCccchh-----hc
Confidence 345667777776654 22222 123346777777776542 21 1122 56777777777664333221 12
Q ss_pred ccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhh
Q 006749 413 SASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLES 492 (632)
Q Consensus 413 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 492 (632)
.+++|++|+++++.. .........+..+++|++|++++|. +.... .....+++|+.|+++++ .+........+..
T Consensus 348 ~l~~L~~L~ls~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 348 ALPSLSYLDLSRNAL-SFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS--ANFMGLEELQHLDFQHS-TLKRVTEFSAFLS 422 (606)
T ss_dssp CCTTCCEEECCSSCE-EEEEECCHHHHCCSCCCEEECCSCS-EEEEC--CCCTTCTTCCEEECTTS-EEESTTTTTTTTT
T ss_pred cCCCCCEEECcCCcc-CCCcchhhhhccCCcccEeECCCCc-cccch--hhccCCCCCCeeECCCC-ccCCccChhhhhc
Confidence 347777777776532 2221112234467778888887764 22111 11224578888888773 3322211122233
Q ss_pred ccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhc
Q 006749 493 CKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAE 572 (632)
Q Consensus 493 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 572 (632)
++ +|++|++++| .+.......+. .+++|+.|++++| .+++..+......+++|++|++++|.++......+. .
T Consensus 423 l~-~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~ 495 (606)
T 3vq2_A 423 LE-KLLYLDISYT-NTKIDFDGIFL--GLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD--T 495 (606)
T ss_dssp CT-TCCEEECTTS-CCEECCTTTTT--TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT--T
T ss_pred cc-cCCEEECcCC-CCCccchhhhc--CCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc--c
Confidence 44 8999999886 44433222233 4789999999884 555422222334589999999999998875555555 7
Q ss_pred cCCccEEeccCCCCcCcchHHHHHHhCCccccccccccCCCCH
Q 006749 573 QLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINS 615 (632)
Q Consensus 573 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 615 (632)
+++|++|++++|. ++......+ ..+++|++|++++| +++.
T Consensus 496 l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~l~~N-~l~~ 535 (606)
T 3vq2_A 496 LHRLQLLNMSHNN-LLFLDSSHY-NQLYSLSTLDCSFN-RIET 535 (606)
T ss_dssp CTTCCEEECCSSC-CSCEEGGGT-TTCTTCCEEECTTS-CCCC
T ss_pred cccCCEEECCCCc-CCCcCHHHc-cCCCcCCEEECCCC-cCcc
Confidence 8899999999975 765443443 34567999999995 5663
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=5e-23 Score=220.14 Aligned_cols=424 Identities=15% Similarity=0.102 Sum_probs=209.0
Q ss_pred CCCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHh
Q 006749 148 HGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAE 227 (632)
Q Consensus 148 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 227 (632)
+++|++|+++++. ...+....+ ..+++|++|+++++ .+...... .+..+++|++|+++++ .++..... ...
T Consensus 51 l~~L~~L~Ls~n~-i~~i~~~~~----~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~l~~~-~~~ 121 (570)
T 2z63_A 51 FPELQVLDLSRCE-IQTIEDGAY----QSLSHLSTLILTGN-PIQSLALG-AFSGLSSLQKLVAVET-NLASLENF-PIG 121 (570)
T ss_dssp CSSCCEEECTTCC-CCEECTTTT----TTCTTCCEEECTTC-CCCEECTT-TTTTCTTCCEEECTTS-CCCCSTTC-SCT
T ss_pred CCCceEEECCCCc-CCccCcccc----cCchhCCEEeCcCC-cCCccCHh-hhcCcccccccccccc-ccccCCCc-ccc
Confidence 4677777777652 112222111 34677777777765 34332211 2236677777777764 33321000 123
Q ss_pred hCCCCcEEeccCCCCCCch-HHHHHhhcCCCCcEEEccCCCCcc--hhhHHHHHhhhhhhcccccccccccchhHHHHHh
Q 006749 228 NCPNLTSLNIESCSKIGND-GLQAIGKFCRNLQCLSIKDCPLVR--DQGISSLLSSASSVLTRVKLQALNITDFSLAVIG 304 (632)
Q Consensus 228 ~l~~L~~L~L~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~ 304 (632)
.+++|++|+++++. +... ....+.. +++|++|+++++.-.. ...+..+... +.....+++.++.+.......+.
T Consensus 122 ~l~~L~~L~L~~n~-l~~~~lp~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~~~~~L~l~~n~l~~~~~~~~~ 198 (570)
T 2z63_A 122 HLKTLKELNVAHNL-IQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQM-PLLNLSLDLSLNPMNFIQPGAFK 198 (570)
T ss_dssp TCTTCCEEECCSSC-CCCCCCCGGGGG-CTTCCEEECTTSCCCEECGGGGHHHHTC-TTCCCEEECTTCCCCEECTTTTT
T ss_pred ccccccEEecCCCc-cceecChhhhcc-cCCCCEEeCcCCccceecHHHccchhcc-chhhhhcccCCCCceecCHHHhc
Confidence 56777777777643 3221 1223343 7778888877654211 1122222210 00014555655554433222111
Q ss_pred hcCcccceecccCCCC---------------------------------Ccccchh---------------------hcc
Q 006749 305 HYGKALTNLVLSDLPN---------------------------------VSEKGFW---------------------VMG 330 (632)
Q Consensus 305 ~~~~~L~~L~l~~~~~---------------------------------~~~~~~~---------------------~~~ 330 (632)
. .+|+.|+++++.. +....+. ...
T Consensus 199 ~--~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 276 (570)
T 2z63_A 199 E--IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276 (570)
T ss_dssp T--CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTT
T ss_pred c--CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchh
Confidence 1 1344444443210 0000000 001
Q ss_pred cccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHH
Q 006749 331 NAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVV 410 (632)
Q Consensus 331 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 410 (632)
....+++|++|+++++. +.. +......+ +|++|+++++. +... .. ..+++|+.|++.++........
T Consensus 277 ~~~~l~~L~~L~l~~~~-l~~--l~~~~~~~-~L~~L~l~~n~-~~~l--~~--~~l~~L~~L~l~~n~~~~~~~~---- 343 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSVT-IER--VKDFSYNF-GWQHLELVNCK-FGQF--PT--LKLKSLKRLTFTSNKGGNAFSE---- 343 (570)
T ss_dssp TTGGGTTCSEEEEESCE-ECS--CCBCCSCC-CCSEEEEESCB-CSSC--CB--CBCSSCCEEEEESCBSCCBCCC----
T ss_pred hhcCcCcccEEEecCcc-chh--hhhhhccC-CccEEeeccCc-cccc--Cc--ccccccCEEeCcCCcccccccc----
Confidence 12234566666666553 221 11112223 56666666543 2111 00 1356666666665442221111
Q ss_pred hcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHH
Q 006749 411 SNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLL 490 (632)
Q Consensus 411 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 490 (632)
..+++|++|+++++.. .........+..+++|++|++++|.... .... ...+++|++|+++++ .+........+
T Consensus 344 -~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~~ 417 (570)
T 2z63_A 344 -VDLPSLEFLDLSRNGL-SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN--FLGLEQLEHLDFQHS-NLKQMSEFSVF 417 (570)
T ss_dssp -CBCTTCCEEECCSSCC-BEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEE--EETCTTCCEEECTTS-EEESCTTSCTT
T ss_pred -ccCCCCCEEeCcCCcc-CccccccccccccCccCEEECCCCcccc-cccc--ccccCCCCEEEccCC-ccccccchhhh
Confidence 2336777777766532 2211111223456777777777764211 1101 234577777777763 22221111122
Q ss_pred hhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhh
Q 006749 491 ESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSH 570 (632)
Q Consensus 491 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~ 570 (632)
..++ +|++|++++| .+.......+. .+++|+.|++++| .+++..+......+++|+.|++++|++++.....+.
T Consensus 418 ~~l~-~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~- 491 (570)
T 2z63_A 418 LSLR-NLIYLDISHT-HTRVAFNGIFN--GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN- 491 (570)
T ss_dssp TTCT-TCCEEECTTS-CCEECCTTTTT--TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-
T ss_pred hcCC-CCCEEeCcCC-cccccchhhhh--cCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCccccCChhhhh-
Confidence 3344 7888888886 33332222222 4788888888884 454222222234588899999999988775555555
Q ss_pred hccCCccEEeccCCCCcCcchHHHHHHhCCccccccccccCCC
Q 006749 571 AEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSI 613 (632)
Q Consensus 571 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l 613 (632)
.+++|++|++++|. ++...... ...+++|++|++++++--
T Consensus 492 -~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 492 -SLSSLQVLNMASNQ-LKSVPDGI-FDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp -TCTTCCEEECCSSC-CSCCCTTT-TTTCTTCCEEECCSSCBC
T ss_pred -cccCCCEEeCCCCc-CCCCCHHH-hhcccCCcEEEecCCccc
Confidence 67889999999864 65543322 344667999999885543
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=8.9e-20 Score=192.30 Aligned_cols=427 Identities=15% Similarity=0.081 Sum_probs=239.0
Q ss_pred CCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhh
Q 006749 149 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 228 (632)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 228 (632)
+++++|+++++ .+.......+ ..+++|++|+++++ .+...... .+..+++|++|+++++ .++. ++.. .
T Consensus 21 ~~L~~L~Ls~n----~i~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~--lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQN----YISELWTSDI-LSLSKLRILIISHN-RIQYLDIS-VFKFNQELEYLDLSHN-KLVK--ISCH--P 88 (520)
T ss_dssp TTCSEEECCSS----CCCCCCHHHH-TTCTTCCEEECCSS-CCCEEEGG-GGTTCTTCCEEECCSS-CCCE--EECC--C
T ss_pred ccccEEECCCC----cccccChhhc-cccccccEEecCCC-ccCCcChH-HhhcccCCCEEecCCC-ceee--cCcc--c
Confidence 68999999987 3433333333 36889999999886 45543222 2347889999999984 5553 3222 5
Q ss_pred CCCCcEEeccCCCCCCchH-HHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhc--cccccccccc--chhHHHHH
Q 006749 229 CPNLTSLNIESCSKIGNDG-LQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVL--TRVKLQALNI--TDFSLAVI 303 (632)
Q Consensus 229 l~~L~~L~L~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L--~~L~L~~~~i--~~~~~~~~ 303 (632)
+++|++|+++++. +.... ...+.. +++|++|+++++. +....+..+ . ++ +.|.+.++.+ .......+
T Consensus 89 l~~L~~L~L~~N~-l~~~~~p~~~~~-l~~L~~L~L~~n~-l~~~~~~~l----~-~L~L~~L~l~~n~l~~~~~~~~~l 160 (520)
T 2z7x_B 89 TVNLKHLDLSFNA-FDALPICKEFGN-MSQLKFLGLSTTH-LEKSSVLPI----A-HLNISKVLLVLGETYGEKEDPEGL 160 (520)
T ss_dssp CCCCSEEECCSSC-CSSCCCCGGGGG-CTTCCEEEEEESS-CCGGGGGGG----T-TSCEEEEEEEECTTTTSSCCTTTT
T ss_pred cCCccEEeccCCc-cccccchhhhcc-CCcceEEEecCcc-cchhhcccc----c-cceeeEEEeecccccccccccccc
Confidence 8899999999754 33322 234444 8899999998865 433322221 1 15 7788877766 33222222
Q ss_pred hh-------------------------cCcccceecccCCCCCc--ccchhhcccccCCCCcceEeccCCCCCChhHHHH
Q 006749 304 GH-------------------------YGKALTNLVLSDLPNVS--EKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEA 356 (632)
Q Consensus 304 ~~-------------------------~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 356 (632)
.. .+++|+.++++++.... ......+..+..+++|+.|+++++. +....+..
T Consensus 161 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~ 239 (520)
T 2z7x_B 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE-TTWNSFIR 239 (520)
T ss_dssp TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE-EEHHHHHH
T ss_pred cccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccc-cCHHHHHH
Confidence 22 23445555554432000 0000111233456677777776654 44333333
Q ss_pred Hhh--cCCccceeecCCCCCCChHHHHHH----HHhcCCCCeEecccCCC-cchhhHHHHHhcccccccEEeccccCCCC
Q 006749 357 MGK--GCLNLKQMCLRKCCFVSDNGLVAF----SKAAGSLEILQLEECNR-VSQSGILGVVSNSASKLKSLTLVKCMGIK 429 (632)
Q Consensus 357 l~~--~~~~L~~L~L~~~~~l~~~~l~~l----~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 429 (632)
+.. .+++|++|+++++. +.+.....+ ...+++|+.+++.++.- +....+...+.. .+|+.|+++++....
T Consensus 240 ~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~--~~L~~L~l~~n~l~~ 316 (520)
T 2z7x_B 240 ILQLVWHTTVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN--MNIKNFTVSGTRMVH 316 (520)
T ss_dssp HHHHHHTSSCSEEEEEEEE-EESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHT--CCCSEEEEESSCCCC
T ss_pred HHHHhhhCcccEEEeeccc-ccCccccchhhcccccCceeEeccccccceecchhhhhccccc--CceeEEEcCCCcccc
Confidence 221 13578888877653 111000000 02356666666665432 111222222111 468888888865322
Q ss_pred ccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCc-hhhHHHHhhccCCccEEecCCCCCC
Q 006749 430 DMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITD-VGIFPLLESCKAGLVKVNLSGCLNL 508 (632)
Q Consensus 430 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~~L~~L~l~~c~~l 508 (632)
.. ....+++|++|++++|. ++......+ ..+++|++|++++ +.++. ..+...+..++ +|++|+++++ .+
T Consensus 317 -~~----~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~-N~l~~l~~~~~~~~~l~-~L~~L~Ls~N-~l 386 (520)
T 2z7x_B 317 -ML----CPSKISPFLHLDFSNNL-LTDTVFENC-GHLTELETLILQM-NQLKELSKIAEMTTQMK-SLQQLDISQN-SV 386 (520)
T ss_dssp -CC----CCSSCCCCCEEECCSSC-CCTTTTTTC-CCCSSCCEEECCS-SCCCBHHHHHHHHTTCT-TCCEEECCSS-CC
T ss_pred -cc----chhhCCcccEEEeECCc-cChhhhhhh-ccCCCCCEEEccC-CccCccccchHHHhhCC-CCCEEECCCC-cC
Confidence 21 12467888888888875 332212222 3468888888887 45553 22333344454 8888888885 44
Q ss_pred Ch-HHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcC-CCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCC
Q 006749 509 TD-EVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC-MFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSE 586 (632)
Q Consensus 509 ~~-~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~ 586 (632)
+. .....+. .+++|+.|++++ +.++.... ..+ ++|+.|++++|+++.. ...+. .+++|++|++++|.
T Consensus 387 ~~~l~~~~~~--~l~~L~~L~Ls~-N~l~~~~~----~~l~~~L~~L~Ls~N~l~~i-p~~~~--~l~~L~~L~L~~N~- 455 (520)
T 2z7x_B 387 SYDEKKGDCS--WTKSLLSLNMSS-NILTDTIF----RCLPPRIKVLDLHSNKIKSI-PKQVV--KLEALQELNVASNQ- 455 (520)
T ss_dssp BCCGGGCSCC--CCTTCCEEECCS-SCCCGGGG----GSCCTTCCEEECCSSCCCCC-CGGGG--GCTTCCEEECCSSC-
T ss_pred Ccccccchhc--cCccCCEEECcC-CCCCcchh----hhhcccCCEEECCCCccccc-chhhh--cCCCCCEEECCCCc-
Confidence 43 2211111 467888888888 46654332 223 6888888888887731 22233 67788888888864
Q ss_pred cCcchHHHHHHhCCccccccccccCCCCHHHHHHH
Q 006749 587 VSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARL 621 (632)
Q Consensus 587 l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 621 (632)
++..... ....+++|++|++++++-..+..+.++
T Consensus 456 l~~l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 456 LKSVPDG-IFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp CCCCCTT-TTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred CCccCHH-HhccCCcccEEECcCCCCcccCCchHH
Confidence 6533222 233456788888888666666666555
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=5.5e-21 Score=208.55 Aligned_cols=91 Identities=19% Similarity=0.164 Sum_probs=54.5
Q ss_pred cCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhh------hhccCCccEEeccCCCCcCcchHH
Q 006749 520 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALS------HAEQLNLQVLSLSSCSEVSNKSMP 593 (632)
Q Consensus 520 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~------~~~~~~L~~L~l~~c~~l~~~~~~ 593 (632)
.+++|+.|++++ +.++......+ ..+++|+.|++++|.++......+. ...+++|+.|++++|. ++.....
T Consensus 478 ~l~~L~~L~Ls~-N~l~~i~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~ 554 (680)
T 1ziw_A 478 PLRNLTILDLSN-NNIANINDDML-EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVE 554 (680)
T ss_dssp TCTTCCEEECCS-SCCCCCCTTTT-TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred cCCCCCEEECCC-CCCCcCChhhh-ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHH
Confidence 367777888777 45554332222 3478888888888877653211100 0266788888888854 6532222
Q ss_pred HHHHhCCccccccccccCCCCH
Q 006749 594 ALKKLGKTLVGLNLQNCNSINS 615 (632)
Q Consensus 594 ~~~~~~~~L~~L~l~~c~~l~~ 615 (632)
....+++|++|++++ ++++.
T Consensus 555 -~~~~l~~L~~L~Ls~-N~l~~ 574 (680)
T 1ziw_A 555 -VFKDLFELKIIDLGL-NNLNT 574 (680)
T ss_dssp -TTTTCTTCCEEECCS-SCCCC
T ss_pred -HcccccCcceeECCC-CCCCc
Confidence 234456788888887 56653
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=7.2e-20 Score=193.02 Aligned_cols=417 Identities=14% Similarity=0.063 Sum_probs=246.0
Q ss_pred ceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhhCCC
Q 006749 152 GKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPN 231 (632)
Q Consensus 152 ~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~ 231 (632)
++++++++. ...++... .++|++|+++++ .+....... +..+++|++|+++++ .++... +..+..+++
T Consensus 3 ~~l~ls~n~-l~~ip~~~-------~~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~ 70 (520)
T 2z7x_B 3 FLVDRSKNG-LIHVPKDL-------SQKTTILNISQN-YISELWTSD-ILSLSKLRILIISHN-RIQYLD-ISVFKFNQE 70 (520)
T ss_dssp CEEECTTSC-CSSCCCSC-------CTTCSEEECCSS-CCCCCCHHH-HTTCTTCCEEECCSS-CCCEEE-GGGGTTCTT
T ss_pred ceEecCCCC-cccccccc-------cccccEEECCCC-cccccChhh-ccccccccEEecCCC-ccCCcC-hHHhhcccC
Confidence 456777652 22333211 279999999987 455443333 458999999999995 565411 233456899
Q ss_pred CcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCccc-
Q 006749 232 LTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKAL- 310 (632)
Q Consensus 232 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L- 310 (632)
|++|+++++ .++... .. .+++|++|+++++. +....+........ +|+.|+++++.+....+. .+++|
T Consensus 71 L~~L~Ls~N-~l~~lp--~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~----~l~~L~ 139 (520)
T 2z7x_B 71 LEYLDLSHN-KLVKIS--CH--PTVNLKHLDLSFNA-FDALPICKEFGNMS-QLKFLGLSTTHLEKSSVL----PIAHLN 139 (520)
T ss_dssp CCEEECCSS-CCCEEE--CC--CCCCCSEEECCSSC-CSSCCCCGGGGGCT-TCCEEEEEESSCCGGGGG----GGTTSC
T ss_pred CCEEecCCC-ceeecC--cc--ccCCccEEeccCCc-cccccchhhhccCC-cceEEEecCcccchhhcc----ccccce
Confidence 999999985 444311 11 48999999999875 32211111122233 399999999988874332 34556
Q ss_pred -ceecccCCCC----Ccccchhhcc--------------------cccCCCCcceEeccCCCCCC-----hhHHHHHhhc
Q 006749 311 -TNLVLSDLPN----VSEKGFWVMG--------------------NAQGLQKLVSLTIASGGGVT-----DVSLEAMGKG 360 (632)
Q Consensus 311 -~~L~l~~~~~----~~~~~~~~~~--------------------~~~~~~~L~~L~l~~~~~~~-----~~~~~~l~~~ 360 (632)
+.|+++++.. .....+..+. ....+++|+.|+++++.... ...+. ....
T Consensus 140 L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~ 218 (520)
T 2z7x_B 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQT 218 (520)
T ss_dssp EEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGG
T ss_pred eeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcc
Confidence 8888887643 1111111110 12246677777776653100 01111 2234
Q ss_pred CCccceeecCCCCCCChHHHHHHHH--hcCCCCeEecccCCCcchhh--HHHHHhcccccccEEeccccCCCCccccccc
Q 006749 361 CLNLKQMCLRKCCFVSDNGLVAFSK--AAGSLEILQLEECNRVSQSG--ILGVVSNSASKLKSLTLVKCMGIKDMATEMP 436 (632)
Q Consensus 361 ~~~L~~L~L~~~~~l~~~~l~~l~~--~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 436 (632)
+++|+.|++.++ .+++..+..+.. .+++|+.|+++++.-..... +.......+++|+.++++++.. .+. ..
T Consensus 219 l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p--~~ 293 (520)
T 2z7x_B 219 NPKLSNLTLNNI-ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFP--QS 293 (520)
T ss_dssp CTTCCEEEEEEE-EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSC--TH
T ss_pred ccchhhcccccc-ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecc--hh
Confidence 677888888764 344444443332 24578888887653110100 0000002236777777766443 111 00
Q ss_pred cCC---CCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChH-H
Q 006749 437 MLS---PNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDE-V 512 (632)
Q Consensus 437 ~~~---~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~-~ 512 (632)
.+. ...+|+.|++++|...... ....+++|++|++++ +.+++..... +..++ +|+.|++++| .++.. .
T Consensus 294 ~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~Ls~-n~l~~~~~~~-~~~l~-~L~~L~L~~N-~l~~l~~ 365 (520)
T 2z7x_B 294 YIYEIFSNMNIKNFTVSGTRMVHML----CPSKISPFLHLDFSN-NLLTDTVFEN-CGHLT-ELETLILQMN-QLKELSK 365 (520)
T ss_dssp HHHHHHHTCCCSEEEEESSCCCCCC----CCSSCCCCCEEECCS-SCCCTTTTTT-CCCCS-SCCEEECCSS-CCCBHHH
T ss_pred hhhcccccCceeEEEcCCCcccccc----chhhCCcccEEEeEC-CccChhhhhh-hccCC-CCCEEEccCC-ccCcccc
Confidence 111 1257999999998643211 114679999999998 4555422222 23344 8999999995 66653 2
Q ss_pred HHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchH
Q 006749 513 VLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSM 592 (632)
Q Consensus 513 ~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~ 592 (632)
+..... .+++|+.|++++ +.++..........+++|++|++++|.+++.....+ .++|+.|++++|. ++ .+
T Consensus 366 ~~~~~~-~l~~L~~L~Ls~-N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l----~~~L~~L~Ls~N~-l~--~i 436 (520)
T 2z7x_B 366 IAEMTT-QMKSLQQLDISQ-NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL----PPRIKVLDLHSNK-IK--SI 436 (520)
T ss_dssp HHHHHT-TCTTCCEEECCS-SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC----CTTCCEEECCSSC-CC--CC
T ss_pred chHHHh-hCCCCCEEECCC-CcCCcccccchhccCccCCEEECcCCCCCcchhhhh----cccCCEEECCCCc-cc--cc
Confidence 222233 589999999999 466552112223458999999999999986443322 1699999999975 76 33
Q ss_pred HHHHHhCCccccccccccCCCCH
Q 006749 593 PALKKLGKTLVGLNLQNCNSINS 615 (632)
Q Consensus 593 ~~~~~~~~~L~~L~l~~c~~l~~ 615 (632)
+.....+++|++|++++| +++.
T Consensus 437 p~~~~~l~~L~~L~L~~N-~l~~ 458 (520)
T 2z7x_B 437 PKQVVKLEALQELNVASN-QLKS 458 (520)
T ss_dssp CGGGGGCTTCCEEECCSS-CCCC
T ss_pred chhhhcCCCCCEEECCCC-cCCc
Confidence 332236778999999994 6664
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=1.1e-18 Score=180.73 Aligned_cols=321 Identities=20% Similarity=0.180 Sum_probs=175.2
Q ss_pred cCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhhCCCCcEEeccCCCCCCchHHHHHhhcC
Q 006749 176 GCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFC 255 (632)
Q Consensus 176 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~~~ 255 (632)
.+++|++|+++++ .+..... ...+++|++|+++++ .++. +.. ...+++|++|+++++. +.... .+.. +
T Consensus 66 ~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~--~~~-~~~l~~L~~L~L~~n~-l~~~~--~~~~-l 133 (466)
T 1o6v_A 66 YLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNN-QIAD--ITP-LANLTNLTGLTLFNNQ-ITDID--PLKN-L 133 (466)
T ss_dssp GCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCC--CGG-GTTCTTCCEEECCSSC-CCCCG--GGTT-C
T ss_pred hhcCCCEEECCCC-ccCCchh---hhccccCCEEECCCC-cccc--Chh-hcCCCCCCEEECCCCC-CCCCh--HHcC-C
Confidence 4566666666655 2332221 335566666666653 3332 111 3345666666666542 22211 1222 5
Q ss_pred CCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCcccceecccCCCCCcccchhhcccccCC
Q 006749 256 RNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGL 335 (632)
Q Consensus 256 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 335 (632)
++|++|+++++ .+.+.. ....+++|+.|++.+. +.. ......+
T Consensus 134 ~~L~~L~l~~n---------------------------~l~~~~---~~~~l~~L~~L~l~~~--~~~-----~~~~~~l 176 (466)
T 1o6v_A 134 TNLNRLELSSN---------------------------TISDIS---ALSGLTSLQQLSFGNQ--VTD-----LKPLANL 176 (466)
T ss_dssp TTCSEEEEEEE---------------------------EECCCG---GGTTCTTCSEEEEEES--CCC-----CGGGTTC
T ss_pred CCCCEEECCCC---------------------------ccCCCh---hhccCCcccEeecCCc--ccC-----chhhccC
Confidence 66666666554 322211 0123455666665421 111 1113456
Q ss_pred CCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccc
Q 006749 336 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSAS 415 (632)
Q Consensus 336 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 415 (632)
++|++|+++++. +.... . ...+++|++|+++++. +.+... ...+++|+.|+++++. ++..+. ...++
T Consensus 177 ~~L~~L~l~~n~-l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~----l~~l~ 243 (466)
T 1o6v_A 177 TTLERLDISSNK-VSDIS--V-LAKLTNLESLIATNNQ-ISDITP---LGILTNLDELSLNGNQ-LKDIGT----LASLT 243 (466)
T ss_dssp TTCCEEECCSSC-CCCCG--G-GGGCTTCSEEECCSSC-CCCCGG---GGGCTTCCEEECCSSC-CCCCGG----GGGCT
T ss_pred CCCCEEECcCCc-CCCCh--h-hccCCCCCEEEecCCc-cccccc---ccccCCCCEEECCCCC-cccchh----hhcCC
Confidence 777777777765 33321 1 3456778888887753 322111 2356778888877754 332211 12237
Q ss_pred cccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccC
Q 006749 416 KLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKA 495 (632)
Q Consensus 416 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 495 (632)
+|++|++++|...... .+..+++|++|++++|....... ...+++|+.|+++++ .+++... +..++
T Consensus 244 ~L~~L~l~~n~l~~~~-----~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n-~l~~~~~---~~~l~- 309 (466)
T 1o6v_A 244 NLTDLDLANNQISNLA-----PLSGLTKLTELKLGANQISNISP----LAGLTALTNLELNEN-QLEDISP---ISNLK- 309 (466)
T ss_dssp TCSEEECCSSCCCCCG-----GGTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSS-CCSCCGG---GGGCT-
T ss_pred CCCEEECCCCccccch-----hhhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCCC-cccCchh---hcCCC-
Confidence 7888888776432221 14567888888888775322111 334678888888773 4433211 23344
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 575 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 575 (632)
+|+.|++++| .+++... +. .+++|+.|++++| .+++. .. ...+++|+.|++++|++++... +. .+++
T Consensus 310 ~L~~L~L~~n-~l~~~~~--~~--~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~--~~--~l~~ 376 (466)
T 1o6v_A 310 NLTYLTLYFN-NISDISP--VS--SLTKLQRLFFYNN-KVSDV--SS-LANLTNINWLSAGHNQISDLTP--LA--NLTR 376 (466)
T ss_dssp TCSEEECCSS-CCSCCGG--GG--GCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSSCCCBCGG--GT--TCTT
T ss_pred CCCEEECcCC-cCCCchh--hc--cCccCCEeECCCC-ccCCc--hh-hccCCCCCEEeCCCCccCccch--hh--cCCC
Confidence 7888888875 4444322 22 4788888888874 55553 12 2347888888888888766443 33 6778
Q ss_pred ccEEeccCCC
Q 006749 576 LQVLSLSSCS 585 (632)
Q Consensus 576 L~~L~l~~c~ 585 (632)
|+.|++++|+
T Consensus 377 L~~L~l~~n~ 386 (466)
T 1o6v_A 377 ITQLGLNDQA 386 (466)
T ss_dssp CCEEECCCEE
T ss_pred CCEEeccCCc
Confidence 8888888865
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.81 E-value=4.8e-19 Score=176.37 Aligned_cols=302 Identities=20% Similarity=0.187 Sum_probs=184.4
Q ss_pred hCCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcC
Q 006749 228 NCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYG 307 (632)
Q Consensus 228 ~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~ 307 (632)
.+++|++|++.++. +.. +..+.. +++|++|+++++. +.+... ....+. |+.|+++++.+.+.
T Consensus 42 ~l~~L~~L~l~~~~-i~~--~~~~~~-~~~L~~L~l~~n~-i~~~~~---~~~l~~-L~~L~L~~n~i~~~--------- 103 (347)
T 4fmz_A 42 ELESITKLVVAGEK-VAS--IQGIEY-LTNLEYLNLNGNQ-ITDISP---LSNLVK-LTNLYIGTNKITDI--------- 103 (347)
T ss_dssp HHTTCSEEECCSSC-CCC--CTTGGG-CTTCCEEECCSSC-CCCCGG---GTTCTT-CCEEECCSSCCCCC---------
T ss_pred hcccccEEEEeCCc-ccc--chhhhh-cCCccEEEccCCc-cccchh---hhcCCc-CCEEEccCCcccCc---------
Confidence 47899999999854 332 223444 8899999998864 322211 122112 44444444443321
Q ss_pred cccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhc
Q 006749 308 KALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAA 387 (632)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~ 387 (632)
.....+++|++|+++++. +..... ...+++|++|+++++....... . ...+
T Consensus 104 ----------------------~~~~~l~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~l~~n~~~~~~~--~-~~~l 154 (347)
T 4fmz_A 104 ----------------------SALQNLTNLRELYLNEDN-ISDISP---LANLTKMYSLNLGANHNLSDLS--P-LSNM 154 (347)
T ss_dssp ----------------------GGGTTCTTCSEEECTTSC-CCCCGG---GTTCTTCCEEECTTCTTCCCCG--G-GTTC
T ss_pred ----------------------hHHcCCCcCCEEECcCCc-ccCchh---hccCCceeEEECCCCCCccccc--c-hhhC
Confidence 112445677777777664 332221 3456777777777764443321 1 3456
Q ss_pred CCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcC
Q 006749 388 GSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLC 467 (632)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~ 467 (632)
++|+.|+++++.-..... ...+++|++|++++|.. .+.. .+..+++|+.|++++|....... ...+
T Consensus 155 ~~L~~L~l~~~~~~~~~~-----~~~l~~L~~L~l~~n~l-~~~~----~~~~l~~L~~L~l~~n~l~~~~~----~~~~ 220 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVTP-----IANLTDLYSLSLNYNQI-EDIS----PLASLTSLHYFTAYVNQITDITP----VANM 220 (347)
T ss_dssp TTCCEEECCSSCCCCCGG-----GGGCTTCSEEECTTSCC-CCCG----GGGGCTTCCEEECCSSCCCCCGG----GGGC
T ss_pred CCCcEEEecCCCcCCchh-----hccCCCCCEEEccCCcc-cccc----cccCCCccceeecccCCCCCCch----hhcC
Confidence 777777777655322222 12337788888877642 2221 14567888888888775322221 3456
Q ss_pred CCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcC
Q 006749 468 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 547 (632)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 547 (632)
++|++|+++++ .+++... +..++ +|++|++++| .+++. ..+. .+++|+.|++++| .+++.. ....+
T Consensus 221 ~~L~~L~l~~n-~l~~~~~---~~~l~-~L~~L~l~~n-~l~~~--~~~~--~l~~L~~L~l~~n-~l~~~~---~~~~l 286 (347)
T 4fmz_A 221 TRLNSLKIGNN-KITDLSP---LANLS-QLTWLEIGTN-QISDI--NAVK--DLTKLKMLNVGSN-QISDIS---VLNNL 286 (347)
T ss_dssp TTCCEEECCSS-CCCCCGG---GTTCT-TCCEEECCSS-CCCCC--GGGT--TCTTCCEEECCSS-CCCCCG---GGGGC
T ss_pred CcCCEEEccCC-ccCCCcc---hhcCC-CCCEEECCCC-ccCCC--hhHh--cCCCcCEEEccCC-ccCCCh---hhcCC
Confidence 88888888874 4433221 33444 8888888885 44442 2222 4789999999885 666542 23458
Q ss_pred CCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCcccccccccc
Q 006749 548 MFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNC 610 (632)
Q Consensus 548 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 610 (632)
++|+.|++++|.+++.....+. .+++|++|++++|+ +++... ...+++|++|++++|
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIG--GLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQ 343 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHH--TCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC
T ss_pred CCCCEEECcCCcCCCcChhHhh--ccccCCEEEccCCc-cccccC---hhhhhccceeehhhh
Confidence 8999999999998887777776 78899999999976 654432 345677999999985
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=1.1e-18 Score=180.79 Aligned_cols=342 Identities=18% Similarity=0.161 Sum_probs=229.4
Q ss_pred CCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhhCCCCcEEeccCCCCCCchHHHHHhhcCC
Q 006749 177 CPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCR 256 (632)
Q Consensus 177 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~~~~ 256 (632)
+++|++|++.++. +... .. ...+++|++|+++++ .++. +.. ...+++|++|+++++. +..... +.. ++
T Consensus 45 l~~l~~L~l~~~~-i~~l--~~-~~~l~~L~~L~Ls~n-~l~~--~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~-l~ 112 (466)
T 1o6v_A 45 LDQVTTLQADRLG-IKSI--DG-VEYLNNLTQINFSNN-QLTD--ITP-LKNLTKLVDILMNNNQ-IADITP--LAN-LT 112 (466)
T ss_dssp HHTCCEEECCSSC-CCCC--TT-GGGCTTCCEEECCSS-CCCC--CGG-GTTCTTCCEEECCSSC-CCCCGG--GTT-CT
T ss_pred hccccEEecCCCC-CccC--cc-hhhhcCCCEEECCCC-ccCC--chh-hhccccCCEEECCCCc-cccChh--hcC-CC
Confidence 3578888888763 3322 12 346888999998885 4443 222 4568888888888754 332221 444 78
Q ss_pred CCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCcccceecccCCCCCcccchhhcccccCCC
Q 006749 257 NLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQ 336 (632)
Q Consensus 257 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 336 (632)
+|++|+++++. +.. ... ...+++|+.|+++++.. .. +.....++
T Consensus 113 ~L~~L~L~~n~-l~~--------------------------~~~---~~~l~~L~~L~l~~n~l-~~-----~~~~~~l~ 156 (466)
T 1o6v_A 113 NLTGLTLFNNQ-ITD--------------------------IDP---LKNLTNLNRLELSSNTI-SD-----ISALSGLT 156 (466)
T ss_dssp TCCEEECCSSC-CCC--------------------------CGG---GTTCTTCSEEEEEEEEE-CC-----CGGGTTCT
T ss_pred CCCEEECCCCC-CCC--------------------------ChH---HcCCCCCCEEECCCCcc-CC-----ChhhccCC
Confidence 88888887764 111 100 23468899999988742 22 12346689
Q ss_pred CcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhccccc
Q 006749 337 KLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASK 416 (632)
Q Consensus 337 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 416 (632)
+|++|++.+.. .... . ...+++|+.|+++++. +.+.. . ...+++|+.|+++++.-..... ...+++
T Consensus 157 ~L~~L~l~~~~--~~~~--~-~~~l~~L~~L~l~~n~-l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~ 222 (466)
T 1o6v_A 157 SLQQLSFGNQV--TDLK--P-LANLTTLERLDISSNK-VSDIS--V-LAKLTNLESLIATNNQISDITP-----LGILTN 222 (466)
T ss_dssp TCSEEEEEESC--CCCG--G-GTTCTTCCEEECCSSC-CCCCG--G-GGGCTTCSEEECCSSCCCCCGG-----GGGCTT
T ss_pred cccEeecCCcc--cCch--h-hccCCCCCEEECcCCc-CCCCh--h-hccCCCCCEEEecCCccccccc-----ccccCC
Confidence 99999997532 2211 1 3567999999999874 43321 1 3578999999999875322222 223489
Q ss_pred ccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCC
Q 006749 417 LKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAG 496 (632)
Q Consensus 417 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 496 (632)
|+.|++++|. +..+ ..+..+++|++|++++|....... ...+++|++|+++++ .++.... +..++ +
T Consensus 223 L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~~---~~~l~-~ 288 (466)
T 1o6v_A 223 LDELSLNGNQ-LKDI----GTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGAN-QISNISP---LAGLT-A 288 (466)
T ss_dssp CCEEECCSSC-CCCC----GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSS-CCCCCGG---GTTCT-T
T ss_pred CCEEECCCCC-cccc----hhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCC-ccCcccc---ccCCC-c
Confidence 9999999975 3333 345678999999999986433222 446799999999984 4443221 33444 8
Q ss_pred ccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCc
Q 006749 497 LVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNL 576 (632)
Q Consensus 497 L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L 576 (632)
|+.|++++| .+.+... +. .+++|+.|++++| .+++... ...+++|+.|++++|.+++. ..+. .+++|
T Consensus 289 L~~L~L~~n-~l~~~~~--~~--~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~--~l~~L 355 (466)
T 1o6v_A 289 LTNLELNEN-QLEDISP--IS--NLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNKVSDV--SSLA--NLTNI 355 (466)
T ss_dssp CSEEECCSS-CCSCCGG--GG--GCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSCCCCC--GGGT--TCTTC
T ss_pred cCeEEcCCC-cccCchh--hc--CCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCccCCc--hhhc--cCCCC
Confidence 999999996 4544322 22 5899999999995 6665432 34699999999999998874 3444 78999
Q ss_pred cEEeccCCCCcCcchHHHHHHhCCccccccccccC
Q 006749 577 QVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCN 611 (632)
Q Consensus 577 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 611 (632)
+.|++++|. +++... ...+++|+.|++++|+
T Consensus 356 ~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 356 NWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp CEEECCSSC-CCBCGG---GTTCTTCCEEECCCEE
T ss_pred CEEeCCCCc-cCccch---hhcCCCCCEEeccCCc
Confidence 999999976 665443 4456789999999853
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=7.1e-21 Score=207.66 Aligned_cols=89 Identities=20% Similarity=0.141 Sum_probs=49.9
Q ss_pred cCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhH--HHhhhhhccCCccEEeccCCCCcCcchHHHHHH
Q 006749 520 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMG--ISALSHAEQLNLQVLSLSSCSEVSNKSMPALKK 597 (632)
Q Consensus 520 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~--~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 597 (632)
.+++|+.|++++| .+.......+ ..+++|+.|++++|.+...+ ...+ ..+++|+.|++++|. ++...... ..
T Consensus 428 ~l~~L~~L~Ls~n-~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~Ls~N~-l~~i~~~~-~~ 501 (680)
T 1ziw_A 428 GLENIFEIYLSYN-KYLQLTRNSF-ALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDLSNNN-IANINDDM-LE 501 (680)
T ss_dssp TCTTCCEEECCSC-SEEECCTTTT-TTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEECCSSC-CCCCCTTT-TT
T ss_pred CcccccEEecCCC-CcceeChhhh-hcCcccccchhccccccccccCCccc--ccCCCCCEEECCCCC-CCcCChhh-hc
Confidence 3566666666663 3322221112 23666777777766654221 1122 267788889988864 65433222 34
Q ss_pred hCCccccccccccCCCCH
Q 006749 598 LGKTLVGLNLQNCNSINS 615 (632)
Q Consensus 598 ~~~~L~~L~l~~c~~l~~ 615 (632)
.+++|++|++++ ++++.
T Consensus 502 ~l~~L~~L~Ls~-N~l~~ 518 (680)
T 1ziw_A 502 GLEKLEILDLQH-NNLAR 518 (680)
T ss_dssp TCTTCCEEECCS-SCCGG
T ss_pred cccccCEEeCCC-CCccc
Confidence 456799999988 45554
No 23
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=5.8e-18 Score=167.73 Aligned_cols=166 Identities=23% Similarity=0.362 Sum_probs=100.8
Q ss_pred CCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCC-CCChHHHHHHHh
Q 006749 440 PNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCL-NLTDEVVLALAR 518 (632)
Q Consensus 440 ~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~-~l~~~~~~~l~~ 518 (632)
.+++|++|++++|..+++..+..+...+++|++|++++|..+++.++...+..++.+|++|++++|. .+++..+.....
T Consensus 140 ~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~ 219 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 219 (336)
T ss_dssp TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh
Confidence 3555666666666555655555555556777777777654666665655555554467777777765 466555554444
Q ss_pred hcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCC-CCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHH
Q 006749 519 LHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKC-AITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKK 597 (632)
Q Consensus 519 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 597 (632)
.+++|+.|++++|..+++..+..+.. +++|++|++++| .+++.++..+. .+++|++|++++| +++..+..+..
T Consensus 220 -~~~~L~~L~l~~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~--i~~~~~~~l~~ 293 (336)
T 2ast_B 220 -RCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELG--EIPTLKTLQVFGI--VPDGTLQLLKE 293 (336)
T ss_dssp -HCTTCSEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTCTTCCGGGGGGGG--GCTTCCEEECTTS--SCTTCHHHHHH
T ss_pred -hCCCCCEEeCCCCCcCCHHHHHHHhC-CCCCCEeeCCCCCCCCHHHHHHHh--cCCCCCEEeccCc--cCHHHHHHHHh
Confidence 56777777777754466655554443 677777777777 46666555555 5777777777776 66666655443
Q ss_pred hCCccccccccccCCCCH
Q 006749 598 LGKTLVGLNLQNCNSINS 615 (632)
Q Consensus 598 ~~~~L~~L~l~~c~~l~~ 615 (632)
. |+.|++++ ++++.
T Consensus 294 ~---l~~L~l~~-n~l~~ 307 (336)
T 2ast_B 294 A---LPHLQINC-SHFTT 307 (336)
T ss_dssp H---STTSEESC-CCSCC
T ss_pred h---CcceEEec-ccCcc
Confidence 2 34455544 44543
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=8.1e-18 Score=167.46 Aligned_cols=303 Identities=19% Similarity=0.183 Sum_probs=184.7
Q ss_pred hCCCCCEeecCCCCCCCHHHHHHHHhhCCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhh
Q 006749 202 ECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSA 281 (632)
Q Consensus 202 ~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 281 (632)
.+++|++|+++++ .+.. ++. ...+++|++|+++++. +++... +.. +++|++|+++++. +.... . ...+
T Consensus 42 ~l~~L~~L~l~~~-~i~~--~~~-~~~~~~L~~L~l~~n~-i~~~~~--~~~-l~~L~~L~L~~n~-i~~~~--~-~~~l 109 (347)
T 4fmz_A 42 ELESITKLVVAGE-KVAS--IQG-IEYLTNLEYLNLNGNQ-ITDISP--LSN-LVKLTNLYIGTNK-ITDIS--A-LQNL 109 (347)
T ss_dssp HHTTCSEEECCSS-CCCC--CTT-GGGCTTCCEEECCSSC-CCCCGG--GTT-CTTCCEEECCSSC-CCCCG--G-GTTC
T ss_pred hcccccEEEEeCC-cccc--chh-hhhcCCccEEEccCCc-cccchh--hhc-CCcCCEEEccCCc-ccCch--H-HcCC
Confidence 5689999999985 4443 222 3569999999999863 443322 444 9999999999875 33221 1 1222
Q ss_pred hhhcccccccccccchhHHHHHhhcCcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcC
Q 006749 282 SSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGC 361 (632)
Q Consensus 282 ~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 361 (632)
+ +|+.|+++++.+.+... ...+++|++|+++++........ ...+
T Consensus 110 ~-~L~~L~l~~n~i~~~~~-------------------------------~~~l~~L~~L~l~~n~~~~~~~~---~~~l 154 (347)
T 4fmz_A 110 T-NLRELYLNEDNISDISP-------------------------------LANLTKMYSLNLGANHNLSDLSP---LSNM 154 (347)
T ss_dssp T-TCSEEECTTSCCCCCGG-------------------------------GTTCTTCCEEECTTCTTCCCCGG---GTTC
T ss_pred C-cCCEEECcCCcccCchh-------------------------------hccCCceeEEECCCCCCcccccc---hhhC
Confidence 2 25555555555443211 23445666666666543332221 2345
Q ss_pred CccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCC
Q 006749 362 LNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPN 441 (632)
Q Consensus 362 ~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 441 (632)
++|++|+++++....... ...+++|+.|+++++. +..... ...+++|+.|+++++... ... .+..+
T Consensus 155 ~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~-l~~~~~----~~~l~~L~~L~l~~n~l~-~~~----~~~~~ 220 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQ-IEDISP----LASLTSLHYFTAYVNQIT-DIT----PVANM 220 (347)
T ss_dssp TTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSC-CCCCGG----GGGCTTCCEEECCSSCCC-CCG----GGGGC
T ss_pred CCCcEEEecCCCcCCchh----hccCCCCCEEEccCCc-cccccc----ccCCCccceeecccCCCC-CCc----hhhcC
Confidence 667777776653221111 2356677777776654 222211 122367777777775322 221 14567
Q ss_pred CCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcC
Q 006749 442 CSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHS 521 (632)
Q Consensus 442 ~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 521 (632)
++|++|++++|....... ...+++|++|+++++ .+++. ..+..++ +|++|++++| .+++. ..+. .+
T Consensus 221 ~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~---~~~~~l~-~L~~L~l~~n-~l~~~--~~~~--~l 286 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTN-QISDI---NAVKDLT-KLKMLNVGSN-QISDI--SVLN--NL 286 (347)
T ss_dssp TTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS-CCCCC---GGGTTCT-TCCEEECCSS-CCCCC--GGGG--GC
T ss_pred CcCCEEEccCCccCCCcc----hhcCCCCCEEECCCC-ccCCC---hhHhcCC-CcCEEEccCC-ccCCC--hhhc--CC
Confidence 788888888775322111 345688888888874 44432 1223344 8999999886 55543 2222 58
Q ss_pred CCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCC
Q 006749 522 ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 585 (632)
Q Consensus 522 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 585 (632)
++|+.|++++| .+++.....+.. +++|+.|++++|++++... +. .+++|++|++++|+
T Consensus 287 ~~L~~L~L~~n-~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~--~~--~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 287 SQLNSLFLNNN-QLGNEDMEVIGG-LTNLTTLFLSQNHITDIRP--LA--SLSKMDSADFANQV 344 (347)
T ss_dssp TTCSEEECCSS-CCCGGGHHHHHT-CTTCSEEECCSSSCCCCGG--GG--GCTTCSEESSSCC-
T ss_pred CCCCEEECcCC-cCCCcChhHhhc-cccCCEEEccCCccccccC--hh--hhhccceeehhhhc
Confidence 99999999985 787776666654 8999999999999877543 34 78899999999976
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=2.4e-19 Score=190.48 Aligned_cols=403 Identities=18% Similarity=0.154 Sum_probs=229.2
Q ss_pred CCCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHh
Q 006749 148 HGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAE 227 (632)
Q Consensus 148 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 227 (632)
.++|++|+++++ .+.......+ ..+++|++|+++++ .+........+..+++|++|+++++..+.... .....
T Consensus 73 l~~L~~L~Ls~n----~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~ 145 (549)
T 2z81_A 73 LGSLEHLDLSDN----HLSSLSSSWF-GPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFA 145 (549)
T ss_dssp CTTCCEEECTTS----CCCSCCHHHH-TTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTT
T ss_pred cccCCEEECCCC----ccCccCHHHh-ccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccC-Hhhhh
Confidence 468888888877 3333333333 36788888888876 34432222223467888888888753233210 01223
Q ss_pred hCCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhh-------------------------
Q 006749 228 NCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSAS------------------------- 282 (632)
Q Consensus 228 ~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~------------------------- 282 (632)
.+++|++|+++++. +.......+.. +++|++|++..+.. ... ...+....+
T Consensus 146 ~l~~L~~L~L~~n~-l~~~~~~~l~~-l~~L~~L~l~~n~~-~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 221 (549)
T 2z81_A 146 GLTSLNELEIKALS-LRNYQSQSLKS-IRDIHHLTLHLSES-AFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221 (549)
T ss_dssp TCCEEEEEEEEETT-CCEECTTTTTT-CSEEEEEEEECSBS-TTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCC
T ss_pred cccccCeeeccCCc-ccccChhhhhc-cccCceEecccCcc-ccc-chhhHhhcccccEEEccCCccccccccccchhhh
Confidence 47778888777643 33222222222 44455555444321 100 001111111
Q ss_pred -hhcccccccccccchhHHHHHh---hcCcccceecccCCCCCc--ccchhhcccccCCCCcceEeccCCCCCChh----
Q 006749 283 -SVLTRVKLQALNITDFSLAVIG---HYGKALTNLVLSDLPNVS--EKGFWVMGNAQGLQKLVSLTIASGGGVTDV---- 352 (632)
Q Consensus 283 -~~L~~L~L~~~~i~~~~~~~~~---~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---- 352 (632)
.+++.|.+.++.+.+.....+. ...++++.++++++.... +...........+++|+.|.+.++. +...
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~ 300 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLFY 300 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGSC
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccc-cchhhhcc
Confidence 1244555555555444443332 334566666666653211 1111111223456777888877653 2211
Q ss_pred HHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHH-HHhcccccccEEeccccCCCCcc
Q 006749 353 SLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILG-VVSNSASKLKSLTLVKCMGIKDM 431 (632)
Q Consensus 353 ~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~ 431 (632)
.+..+....++|++|+++++. +... ...+...+++|+.|+++++. +....... .....+++|++|++++|. ++.+
T Consensus 301 ~l~~~~~~~~~L~~L~l~~n~-l~~i-p~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 376 (549)
T 2z81_A 301 DLSTVYSLLEKVKRITVENSK-VFLV-PCSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNH-LRSM 376 (549)
T ss_dssp CCCHHHHHSTTCCEEEEESSC-CCCC-CHHHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSC-CCCH
T ss_pred cchhhhhhcccceEEEeccCc-cccC-CHHHHhcCccccEEEccCCc-cccccccchhhhhccccCcEEEccCCc-cccc
Confidence 111222335789999998864 4321 12334568999999999865 44322211 112345899999999964 3333
Q ss_pred ccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChH
Q 006749 432 ATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDE 511 (632)
Q Consensus 432 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~ 511 (632)
......+..+++|++|++++|. ++. +......+++|++|+++++ .++.-. ...+++|++|++++| .++..
T Consensus 377 ~~~~~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~~~~L~~L~Ls~N-~l~~l~-----~~~~~~L~~L~Ls~N-~l~~~ 446 (549)
T 2z81_A 377 QKTGEILLTLKNLTSLDISRNT-FHP--MPDSCQWPEKMRFLNLSST-GIRVVK-----TCIPQTLEVLDVSNN-NLDSF 446 (549)
T ss_dssp HHHHHHGGGCTTCCEEECTTCC-CCC--CCSCCCCCTTCCEEECTTS-CCSCCC-----TTSCTTCSEEECCSS-CCSCC
T ss_pred ccchhhhhcCCCCCEEECCCCC-Ccc--CChhhcccccccEEECCCC-Cccccc-----chhcCCceEEECCCC-Chhhh
Confidence 2111225678999999999985 331 1112234689999999984 443211 112248999999996 56543
Q ss_pred HHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcC
Q 006749 512 VVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVS 588 (632)
Q Consensus 512 ~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 588 (632)
. . .+++|+.|++++ +.++... .. ..+++|+.|+|++|+++......+. .+++|+.|++++|+...
T Consensus 447 ~-----~-~l~~L~~L~Ls~-N~l~~ip--~~-~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 447 S-----L-FLPRLQELYISR-NKLKTLP--DA-SLFPVLLVMKISRNQLKSVPDGIFD--RLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp C-----C-CCTTCCEEECCS-SCCSSCC--CG-GGCTTCCEEECCSSCCCCCCTTGGG--GCTTCCEEECCSSCBCC
T ss_pred c-----c-cCChhcEEECCC-CccCcCC--Cc-ccCccCCEEecCCCccCCcCHHHHh--cCcccCEEEecCCCccC
Confidence 1 2 589999999999 4776322 22 3589999999999998875544455 78899999999988443
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.78 E-value=6.1e-21 Score=212.21 Aligned_cols=300 Identities=17% Similarity=0.111 Sum_probs=150.9
Q ss_pred CCCCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHH-HH
Q 006749 147 GHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLI-AI 225 (632)
Q Consensus 147 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~-~l 225 (632)
..++|++|+++++.....+....+ ..+++|++|+++++ .+...... .+..+++|++|+++++ .++..... ..
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f----~~L~~L~~L~Ls~N-~l~~~~p~-~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 118 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAF----RNLPNLRILDLGSS-KIYFLHPD-AFQGLFHLFELRLYFC-GLSDAVLKDGY 118 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTT----SSCTTCCEEECTTC-CCCEECTT-SSCSCSSCCCEECTTC-CCSSCCSTTCC
T ss_pred ccccCeEEeCCCCCCccccCHHHh----cCCCCCCEEECCCC-cCcccCHh-HccCCcccCEeeCcCC-CCCcccccCcc
Confidence 346788888877633222322222 35678888888776 34433222 2336778888888874 34321111 11
Q ss_pred HhhCCCCcEEeccCCCCCCchHH-HHHhhcCCCCcEEEccCCCC--cchhhHHHHHhhhhhhcccccccccccchhHHHH
Q 006749 226 AENCPNLTSLNIESCSKIGNDGL-QAIGKFCRNLQCLSIKDCPL--VRDQGISSLLSSASSVLTRVKLQALNITDFSLAV 302 (632)
Q Consensus 226 ~~~l~~L~~L~L~~~~~~~~~~~-~~l~~~~~~L~~L~l~~~~~--~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~ 302 (632)
...+++|++|+++++. +....+ ..+.. +++|++|+++++.- .....+..+.. .+|+.|.+..+.+.......
T Consensus 119 ~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~-L~~L~~L~Ls~N~i~~~~~~~l~~l~~---~~L~~L~L~~n~l~~~~~~~ 193 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQ-IRSLYLHPSFGK-LNSLKSIDFSSNQIFLVCEHELEPLQG---KTLSFFSLAANSLYSRVSVD 193 (844)
T ss_dssp CSSCSSCCEEEEESCC-CCCCCCCGGGGT-CSSCCEEEEESSCCCCCCSGGGHHHHH---CSSCCCEECCSBSCCCCCCC
T ss_pred ccccCCCCEEECCCCc-ccccccchhHhh-CCCCCEEECCCCcCCeeCHHHcccccC---CccceEECCCCccccccccc
Confidence 3457888888888753 332222 22333 78888888877542 11122332211 23777777776655422111
Q ss_pred HhhcCc------ccceecccCCCCCcccchhhcc---------------------------------ccc--CCCCcceE
Q 006749 303 IGHYGK------ALTNLVLSDLPNVSEKGFWVMG---------------------------------NAQ--GLQKLVSL 341 (632)
Q Consensus 303 ~~~~~~------~L~~L~l~~~~~~~~~~~~~~~---------------------------------~~~--~~~~L~~L 341 (632)
+. .++ .|+.|+++++.. .......+. ... ..++|+.|
T Consensus 194 ~~-~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L 271 (844)
T 3j0a_A 194 WG-KCMNPFRNMVLEILDVSGNGW-TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271 (844)
T ss_dssp CC-SSSCTTTTCCBSEEBCSSCCS-STTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred hh-hcCCccccCceeEEecCCCcC-chhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEE
Confidence 11 111 367777776521 100000000 001 12567777
Q ss_pred eccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEe
Q 006749 342 TIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLT 421 (632)
Q Consensus 342 ~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 421 (632)
+++++. +.... ......+++|+.|+++++ .+..... ..+..+++|+.|+++++. ++... ......+++|+.|+
T Consensus 272 ~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 272 DLSHGF-VFSLN-SRVFETLKDLKVLNLAYN-KINKIAD-EAFYGLDNLQVLNLSYNL-LGELY--SSNFYGLPKVAYID 344 (844)
T ss_dssp ECTTCC-CCEEC-SCCSSSCCCCCEEEEESC-CCCEECT-TTTTTCSSCCEEEEESCC-CSCCC--SCSCSSCTTCCEEE
T ss_pred ECCCCc-ccccC-hhhhhcCCCCCEEECCCC-cCCCCCh-HHhcCCCCCCEEECCCCC-CCccC--HHHhcCCCCCCEEE
Confidence 777664 33221 112234577777777765 3332211 112356777777777654 22110 00112236777888
Q ss_pred ccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEecc
Q 006749 422 LVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSG 477 (632)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~ 477 (632)
++++. +..+. ...+..+++|++|++++|. ++.. ..+++|+.|++++
T Consensus 345 L~~N~-i~~~~--~~~~~~l~~L~~L~Ls~N~-l~~i------~~~~~L~~L~l~~ 390 (844)
T 3j0a_A 345 LQKNH-IAIIQ--DQTFKFLEKLQTLDLRDNA-LTTI------HFIPSIPDIFLSG 390 (844)
T ss_dssp CCSCC-CCCCC--SSCSCSCCCCCEEEEETCC-SCCC------SSCCSCSEEEEES
T ss_pred CCCCC-CCccC--hhhhcCCCCCCEEECCCCC-CCcc------cCCCCcchhccCC
Confidence 77753 32221 2234567778888887764 2210 1146777777766
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=8.2e-20 Score=199.46 Aligned_cols=324 Identities=13% Similarity=0.045 Sum_probs=172.9
Q ss_pred CCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccc-cch-hHHHHHh------hcCcccceecccCCCCCcccch
Q 006749 255 CRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALN-ITD-FSLAVIG------HYGKALTNLVLSDLPNVSEKGF 326 (632)
Q Consensus 255 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~-i~~-~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~ 326 (632)
+++|++|++++|....... ......+ +|+.|+++++. +++ .....+. ...++|+.|+++++... . +
T Consensus 490 L~~L~~L~Ls~N~l~~~iP--~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~--i 563 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLP--DFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-E--F 563 (876)
T ss_dssp CTTCCEEEEESCTTCCSCC--GGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-B--C
T ss_pred CCCCCEEECcCCCCCccCh--HHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-c--c
Confidence 5666666666554222111 1111222 26666666665 554 2222221 22357777777766322 1 1
Q ss_pred hhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCC-CCeEecccCCCcchhh
Q 006749 327 WVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGS-LEILQLEECNRVSQSG 405 (632)
Q Consensus 327 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~~ 405 (632)
.....+..+++|+.|+++++. +...+ ....+++|+.|+++++. +. .+...+..+++ |+.|+++++. ++...
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~-l~~lp---~~~~L~~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~-L~~lp 635 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNK-VRHLE---AFGTNVKLTDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSHNK-LKYIP 635 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSC-CCBCC---CCCTTSEESEEECCSSC-CS--CCCTTSCEECTTCCEEECCSSC-CCSCC
T ss_pred CChhhhhcCCCCCEEECCCCC-cccch---hhcCCCcceEEECcCCc-cc--cchHHHhhccccCCEEECcCCC-CCcCc
Confidence 100013456778888887765 44222 23456778888887753 33 12222334566 8888887754 33211
Q ss_pred HHHHHh-cccccccEEeccccCCCCccccccccCC--CCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCC
Q 006749 406 ILGVVS-NSASKLKSLTLVKCMGIKDMATEMPMLS--PNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGIT 482 (632)
Q Consensus 406 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 482 (632)
..+. ...++|+.|++++|.............. ..++|+.|++++|. ++.. ...+...+++|+.|+++++ .++
T Consensus 636 --~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~l-p~~~~~~l~~L~~L~Ls~N-~L~ 710 (876)
T 4ecn_A 636 --NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKF-PTELFATGSPISTIILSNN-LMT 710 (876)
T ss_dssp --SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSC-CHHHHHTTCCCSEEECCSC-CCS
T ss_pred --hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCcc-CHHHHccCCCCCEEECCCC-cCC
Confidence 1111 1113488888888654433221111112 34588888888875 3322 1233345688888888873 443
Q ss_pred ---chhhHHH---HhhccCCccEEecCCCCCCChHHHHHHH-hhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEec
Q 006749 483 ---DVGIFPL---LESCKAGLVKVNLSGCLNLTDEVVLALA-RLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDV 555 (632)
Q Consensus 483 ---~~~~~~l---~~~~~~~L~~L~l~~c~~l~~~~~~~l~-~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L 555 (632)
...+... ...++ +|+.|+|++| .++... ..+. . .+++|+.|++++ +.++.. ...+ ..+++|+.|+|
T Consensus 711 ~ip~~~~~~~~~~l~nl~-~L~~L~Ls~N-~L~~lp-~~l~~~-~l~~L~~L~Ls~-N~L~~l-p~~l-~~L~~L~~L~L 783 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTY-LLTTIDLRFN-KLTSLS-DDFRAT-TLPYLSNMDVSY-NCFSSF-PTQP-LNSSQLKAFGI 783 (876)
T ss_dssp CCCTTSSSCTTSCCTTGG-GCCEEECCSS-CCCCCC-GGGSTT-TCTTCCEEECCS-SCCSSC-CCGG-GGCTTCCEEEC
T ss_pred ccChHHhccccccccccC-CccEEECCCC-CCccch-HHhhhc-cCCCcCEEEeCC-CCCCcc-chhh-hcCCCCCEEEC
Confidence 1111110 11222 7888888885 555322 2222 1 478888888888 466542 1122 35888888888
Q ss_pred cC------CCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCccccccccccC
Q 006749 556 SK------CAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCN 611 (632)
Q Consensus 556 ~~------~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 611 (632)
++ |.+.......+. .+++|+.|+|++|. ++. ++.. ..++|+.|+|++|+
T Consensus 784 s~N~~ls~N~l~~~ip~~l~--~L~~L~~L~Ls~N~-L~~--Ip~~--l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 784 RHQRDAEGNRILRQWPTGIT--TCPSLIQLQIGSND-IRK--VDEK--LTPQLYILDIADNP 838 (876)
T ss_dssp CCCBCTTCCBCCCCCCTTGG--GCSSCCEEECCSSC-CCB--CCSC--CCSSSCEEECCSCT
T ss_pred CCCCCcccccccccChHHHh--cCCCCCEEECCCCC-CCc--cCHh--hcCCCCEEECCCCC
Confidence 76 445443333444 67788888888865 532 2221 34678888888854
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.76 E-value=2.8e-19 Score=190.10 Aligned_cols=428 Identities=14% Similarity=0.097 Sum_probs=220.4
Q ss_pred CCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhh
Q 006749 149 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 228 (632)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 228 (632)
+++++|+++++. ...+....+ ..+++|++|+++++ .+...... .+..+++|++|+++++ .++. ++.. .
T Consensus 52 ~~L~~L~Ls~N~-i~~~~~~~~----~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~--lp~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQNS-ISELRMPDI----SFLSELRVLRLSHN-RIRSLDFH-VFLFNQDLEYLDVSHN-RLQN--ISCC--P 119 (562)
T ss_dssp TTCCEEECCSSC-CCCCCGGGT----TTCTTCCEEECCSC-CCCEECTT-TTTTCTTCCEEECTTS-CCCE--ECSC--C
T ss_pred CCcCEEECCCCC-ccccChhhh----ccCCCccEEECCCC-CCCcCCHH-HhCCCCCCCEEECCCC-cCCc--cCcc--c
Confidence 678888888763 222222222 35778888888876 45433222 2346788888888874 4552 2222 5
Q ss_pred CCCCcEEeccCCCCCCchHH-HHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhccccccccccc--chhHHHHHhh
Q 006749 229 CPNLTSLNIESCSKIGNDGL-QAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNI--TDFSLAVIGH 305 (632)
Q Consensus 229 l~~L~~L~L~~~~~~~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i--~~~~~~~~~~ 305 (632)
+++|++|+++++. +....+ ..+.. +++|++|+++++. +....+..+... +|+.|.++++.+ .......+..
T Consensus 120 l~~L~~L~Ls~N~-l~~l~~p~~~~~-l~~L~~L~L~~n~-l~~~~~~~l~~L---~L~~L~L~~n~l~~~~~~~~~l~~ 193 (562)
T 3a79_B 120 MASLRHLDLSFND-FDVLPVCKEFGN-LTKLTFLGLSAAK-FRQLDLLPVAHL---HLSCILLDLVSYHIKGGETESLQI 193 (562)
T ss_dssp CTTCSEEECCSSC-CSBCCCCGGGGG-CTTCCEEEEECSB-CCTTTTGGGTTS---CEEEEEEEESSCCCCSSSCCEEEE
T ss_pred cccCCEEECCCCC-ccccCchHhhcc-cCcccEEecCCCc-cccCchhhhhhc---eeeEEEeecccccccccCcccccc
Confidence 7888888888753 433222 33444 7888888888754 333222221110 137777777665 3221111111
Q ss_pred cCcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCC---hhHHHHHhhcCCccceeecCCCCCCChHHHHH
Q 006749 306 YGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVT---DVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVA 382 (632)
Q Consensus 306 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~ 382 (632)
.....-.++++.+.... .........+++|+.|+++++.... ...+.. ....++|+.|++.++ .+.+..+..
T Consensus 194 l~~~~l~l~l~~n~~~~---~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~-l~~l~~L~~L~L~~~-~l~~~~~~~ 268 (562)
T 3a79_B 194 PNTTVLHLVFHPNSLFS---VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE-LTRGPTLLNVTLQHI-ETTWKCSVK 268 (562)
T ss_dssp CCEEEEEEEECSSSCCC---CCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH-HHSCSSCEEEEEEEE-EECHHHHHH
T ss_pred cCcceEEEEecCccchh---hhhhhcccccceEEEecccccccccchHHHHHHH-HhccCcceEEEecCC-cCcHHHHHH
Confidence 00000122222221111 0001112234566666666542100 001111 233455555555543 233333322
Q ss_pred HHH--hcCCCCeEecccCCC------------------------------cchhhHHHHHhcccccccEEeccccCCCCc
Q 006749 383 FSK--AAGSLEILQLEECNR------------------------------VSQSGILGVVSNSASKLKSLTLVKCMGIKD 430 (632)
Q Consensus 383 l~~--~~~~L~~L~l~~~~~------------------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 430 (632)
+.. ..++|++|+++++.- +....+...+. ..+|++|+++++.....
T Consensus 269 ~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~--~~~L~~L~l~~n~~~~~ 346 (562)
T 3a79_B 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA--EMNIKMLSISDTPFIHM 346 (562)
T ss_dssp HHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH--TCCCSEEEEESSCCCCC
T ss_pred HHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhc--cCcceEEEccCCCcccc
Confidence 221 123555555544321 01112222211 15688888888653221
Q ss_pred cccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCch-hhHHHHhhccCCccEEecCCCCCCC
Q 006749 431 MATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDV-GIFPLLESCKAGLVKVNLSGCLNLT 509 (632)
Q Consensus 431 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~L~~L~l~~c~~l~ 509 (632)
. ....+++|++|++++|. ++...... ...+++|+.|++++ +.++.. .+...+...+ +|+.|+++++ .++
T Consensus 347 ~-----~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~l~-~L~~L~l~~N-~l~ 416 (562)
T 3a79_B 347 V-----CPPSPSSFTFLNFTQNV-FTDSVFQG-CSTLKRLQTLILQR-NGLKNFFKVALMTKNMS-SLETLDVSLN-SLN 416 (562)
T ss_dssp C-----CCSSCCCCCEEECCSSC-CCTTTTTT-CCSCSSCCEEECCS-SCCCBTTHHHHTTTTCT-TCCEEECTTS-CCB
T ss_pred c-----CccCCCCceEEECCCCc-cccchhhh-hcccCCCCEEECCC-CCcCCcccchhhhcCCC-CCCEEECCCC-cCC
Confidence 1 12467888888888875 33211112 23468888888887 455532 2222334444 8888888885 443
Q ss_pred hHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcC-CCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcC
Q 006749 510 DEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC-MFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVS 588 (632)
Q Consensus 510 ~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 588 (632)
......... .+++|+.|++++ +.++.... ..+ ++|+.|++++|+++.. ...+. .+++|++|++++|. ++
T Consensus 417 ~~~~~~~~~-~l~~L~~L~l~~-n~l~~~~~----~~l~~~L~~L~L~~N~l~~i-p~~~~--~l~~L~~L~L~~N~-l~ 486 (562)
T 3a79_B 417 SHAYDRTCA-WAESILVLNLSS-NMLTGSVF----RCLPPKVKVLDLHNNRIMSI-PKDVT--HLQALQELNVASNQ-LK 486 (562)
T ss_dssp SCCSSCCCC-CCTTCCEEECCS-SCCCGGGG----SSCCTTCSEEECCSSCCCCC-CTTTT--SSCCCSEEECCSSC-CC
T ss_pred CccChhhhc-CcccCCEEECCC-CCCCcchh----hhhcCcCCEEECCCCcCccc-Chhhc--CCCCCCEEECCCCC-CC
Confidence 311111111 467888888888 46654322 234 5888888888887632 11222 57788888888854 65
Q ss_pred cchHHHHHHhCCccccccccccCCCCHHHHHHHH
Q 006749 589 NKSMPALKKLGKTLVGLNLQNCNSINSSTVARLV 622 (632)
Q Consensus 589 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 622 (632)
..... ....+++|+.|++++++-..+....++.
T Consensus 487 ~l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~~ 519 (562)
T 3a79_B 487 SVPDG-VFDRLTSLQYIWLHDNPWDCTCPGIRYL 519 (562)
T ss_dssp CCCTT-STTTCTTCCCEECCSCCBCCCHHHHHHH
T ss_pred CCCHH-HHhcCCCCCEEEecCCCcCCCcchHHHH
Confidence 32222 2344567888888886666666665553
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=4.5e-20 Score=197.22 Aligned_cols=395 Identities=15% Similarity=0.112 Sum_probs=235.4
Q ss_pred CCCCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHH
Q 006749 147 GHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIA 226 (632)
Q Consensus 147 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~ 226 (632)
..++|++|+++++. +.......+ ..+++|++|+++++ .+....... +..+++|++|+++++ .++...++..+
T Consensus 74 ~l~~L~~L~L~~n~----l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~~~~-~~~l~~L~~L~L~~n-~l~~~~lp~~~ 145 (570)
T 2z63_A 74 SLSHLSTLILTGNP----IQSLALGAF-SGLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYF 145 (570)
T ss_dssp TCTTCCEEECTTCC----CCEECTTTT-TTCTTCCEEECTTS-CCCCSTTCS-CTTCTTCCEEECCSS-CCCCCCCCGGG
T ss_pred CchhCCEEeCcCCc----CCccCHhhh-cCcccccccccccc-ccccCCCcc-ccccccccEEecCCC-ccceecChhhh
Confidence 45899999999873 332221122 36889999999986 344322111 347899999999985 44431223345
Q ss_pred hhCCCCcEEeccCCCCCCchHHHHHhhcCCCC----cEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHH-
Q 006749 227 ENCPNLTSLNIESCSKIGNDGLQAIGKFCRNL----QCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLA- 301 (632)
Q Consensus 227 ~~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L----~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~- 301 (632)
.++++|++|+++++. +.......+.. +++| ++|+++++.- .......+. . .+|+.|.+.++......+.
T Consensus 146 ~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~~~~~L~l~~n~l-~~~~~~~~~-~--~~L~~L~l~~n~~~~~~~~~ 219 (570)
T 2z63_A 146 SNLTNLEHLDLSSNK-IQSIYCTDLRV-LHQMPLLNLSLDLSLNPM-NFIQPGAFK-E--IRLHKLTLRNNFDSLNVMKT 219 (570)
T ss_dssp GGCTTCCEEECTTSC-CCEECGGGGHH-HHTCTTCCCEEECTTCCC-CEECTTTTT-T--CEEEEEEEESCCSCTTHHHH
T ss_pred cccCCCCEEeCcCCc-cceecHHHccc-hhccchhhhhcccCCCCc-eecCHHHhc-c--CcceeEecccccccccchhh
Confidence 579999999999853 43322222222 4445 7899987642 211111110 0 0245554444321111100
Q ss_pred --------------------------------------------------------HHhhcCcccceecccCCCCCcccc
Q 006749 302 --------------------------------------------------------VIGHYGKALTNLVLSDLPNVSEKG 325 (632)
Q Consensus 302 --------------------------------------------------------~~~~~~~~L~~L~l~~~~~~~~~~ 325 (632)
.....+++|+.|+++++....
T Consensus 220 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--- 296 (570)
T 2z63_A 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--- 296 (570)
T ss_dssp HHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS---
T ss_pred hhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh---
Confidence 111234667777776653211
Q ss_pred hhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhh
Q 006749 326 FWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSG 405 (632)
Q Consensus 326 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~ 405 (632)
+ ......+ +|++|+++++. +...+. ..+++|++|++.++........ ..+++|+.|+++++. ++..+
T Consensus 297 l--~~~~~~~-~L~~L~l~~n~-~~~l~~----~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~-l~~~~ 363 (570)
T 2z63_A 297 V--KDFSYNF-GWQHLELVNCK-FGQFPT----LKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNG-LSFKG 363 (570)
T ss_dssp C--CBCCSCC-CCSEEEEESCB-CSSCCB----CBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSC-CBEEE
T ss_pred h--hhhhccC-CccEEeeccCc-ccccCc----ccccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCc-cCccc
Confidence 0 0112344 89999999886 332221 3568999999998653322111 467999999999865 33221
Q ss_pred HHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchh
Q 006749 406 ILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVG 485 (632)
Q Consensus 406 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 485 (632)
........+++|++|++++|.... .. ..+..+++|++|++++|.... .........+++|++|+++++ .+...
T Consensus 364 ~~~~~~~~~~~L~~L~l~~n~l~~-~~---~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n-~l~~~- 436 (570)
T 2z63_A 364 CCSQSDFGTTSLKYLDLSFNGVIT-MS---SNFLGLEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHT-HTRVA- 436 (570)
T ss_dssp EEEHHHHTCSCCCEEECCSCSEEE-EE---EEEETCTTCCEEECTTSEEES-CTTSCTTTTCTTCCEEECTTS-CCEEC-
T ss_pred cccccccccCccCEEECCCCcccc-cc---ccccccCCCCEEEccCCcccc-ccchhhhhcCCCCCEEeCcCC-ccccc-
Confidence 000111234899999999975322 21 225678999999999975221 111112345799999999985 33321
Q ss_pred hHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHH
Q 006749 486 IFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGI 565 (632)
Q Consensus 486 ~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 565 (632)
....+..++ +|++|++++| .+.+..+..... .+++|+.|++++| .+++.....+. .+++|+.|++++|+++....
T Consensus 437 ~~~~~~~l~-~L~~L~l~~n-~l~~~~~p~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 437 FNGIFNGLS-SLEVLKMAGN-SFQENFLPDIFT-ELRNLTFLDLSQC-QLEQLSPTAFN-SLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp CTTTTTTCT-TCCEEECTTC-EEGGGEECSCCT-TCTTCCEEECTTS-CCCEECTTTTT-TCTTCCEEECCSSCCSCCCT
T ss_pred chhhhhcCC-cCcEEECcCC-cCccccchhhhh-cccCCCEEECCCC-ccccCChhhhh-cccCCCEEeCCCCcCCCCCH
Confidence 112233344 8999999996 443211111112 5899999999995 77665433333 48999999999999887654
Q ss_pred HhhhhhccCCccEEeccCCC
Q 006749 566 SALSHAEQLNLQVLSLSSCS 585 (632)
Q Consensus 566 ~~l~~~~~~~L~~L~l~~c~ 585 (632)
..+. .+++|+.|++++|+
T Consensus 512 ~~~~--~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 512 GIFD--RLTSLQKIWLHTNP 529 (570)
T ss_dssp TTTT--TCTTCCEEECCSSC
T ss_pred HHhh--cccCCcEEEecCCc
Confidence 4454 78899999999976
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.75 E-value=1.4e-18 Score=179.90 Aligned_cols=366 Identities=13% Similarity=0.070 Sum_probs=166.3
Q ss_pred CCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhh
Q 006749 149 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 228 (632)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 228 (632)
+++++|+++++. +.......+ ..+++|++|+++++. +........+..+++|++|+++++ .++... +..+..
T Consensus 30 ~~l~~L~Ls~n~----i~~~~~~~~-~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~ 101 (455)
T 3v47_A 30 AHVNYVDLSLNS----IAELNETSF-SRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYN-QFLQLE-TGAFNG 101 (455)
T ss_dssp TTCCEEECCSSC----CCEECTTTT-SSCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTC-TTCEEC-TTTTTT
T ss_pred CccCEEEecCCc----cCcCChhHh-ccCccccEEECcCCc-ccceECcccccccccCCEEeCCCC-ccCccC-hhhccC
Confidence 678888888762 332211112 357788888887763 221111122336778888888774 343211 122345
Q ss_pred CCCCcEEeccCCCCCCchHHHH--HhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhc
Q 006749 229 CPNLTSLNIESCSKIGNDGLQA--IGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHY 306 (632)
Q Consensus 229 l~~L~~L~L~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~ 306 (632)
+++|++|+++++ .++...+.. +.. +++|++|+++++. +.......+....+. |+.|+++++.+.......+.
T Consensus 102 l~~L~~L~L~~n-~l~~~~~~~~~~~~-l~~L~~L~L~~n~-l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~-- 175 (455)
T 3v47_A 102 LANLEVLTLTQC-NLDGAVLSGNFFKP-LTSLEMLVLRDNN-IKKIQPASFFLNMRR-FHVLDLTFNKVKSICEEDLL-- 175 (455)
T ss_dssp CTTCCEEECTTS-CCBTHHHHSSTTTT-CTTCCEEECCSSB-CCSCCCCGGGGGCTT-CCEEECTTCCBSCCCTTTSG--
T ss_pred cccCCEEeCCCC-CCCccccCcccccC-cccCCEEECCCCc-cCccCcccccCCCCc-ccEEeCCCCcccccChhhhh--
Confidence 777888888764 343322332 333 7777777777654 221111111111111 44444444433322111110
Q ss_pred CcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhH-----HHHH--hhcCCccceeecCCCCCCChHH
Q 006749 307 GKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVS-----LEAM--GKGCLNLKQMCLRKCCFVSDNG 379 (632)
Q Consensus 307 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----~~~l--~~~~~~L~~L~L~~~~~l~~~~ 379 (632)
.+ ...+|+.|+++++. +.... .... ...+++|++|+++++ .+....
T Consensus 176 ---------------------~l----~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~ 228 (455)
T 3v47_A 176 ---------------------NF----QGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKESM 228 (455)
T ss_dssp ---------------------GG----TTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCHHH
T ss_pred ---------------------cc----ccccccccccccCc-ccccchhhccccccccccccceeeeEecCCC-cccccc
Confidence 00 11455566655543 11110 0000 112356777777664 344433
Q ss_pred HHHHHHh--cCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCH
Q 006749 380 LVAFSKA--AGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGN 457 (632)
Q Consensus 380 l~~l~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 457 (632)
...+... .++|+.|+++++...... + .. ..+.............++|++|++++|.. ..
T Consensus 229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~-~-----------~~------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~ 289 (455)
T 3v47_A 229 AKRFFDAIAGTKIQSLILSNSYNMGSS-F-----------GH------TNFKDPDNFTFKGLEASGVKTCDLSKSKI-FA 289 (455)
T ss_dssp HHHHHHHTTTCCEEEEECTTCTTTSCC-T-----------TC------CSSCCCCTTTTGGGTTSCCCEEECCSSCC-CE
T ss_pred hhhhhccccccceeeEeeccccccccc-c-----------ch------hhhccCcccccccccccCceEEEecCccc-cc
Confidence 3333322 255666666554321100 0 00 00000000000000124555555555431 11
Q ss_pred HHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCCh
Q 006749 458 ASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITD 537 (632)
Q Consensus 458 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~ 537 (632)
... .....+++|++|++++ +.+++.... .+..++ +|++|+++++ .++......+. .+++|+.|++++ +.++.
T Consensus 290 ~~~-~~~~~l~~L~~L~Ls~-n~l~~~~~~-~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~ 361 (455)
T 3v47_A 290 LLK-SVFSHFTDLEQLTLAQ-NEINKIDDN-AFWGLT-HLLKLNLSQN-FLGSIDSRMFE--NLDKLEVLDLSY-NHIRA 361 (455)
T ss_dssp ECT-TTTTTCTTCCEEECTT-SCCCEECTT-TTTTCT-TCCEEECCSS-CCCEECGGGGT--TCTTCCEEECCS-SCCCE
T ss_pred cch-hhcccCCCCCEEECCC-CcccccChh-HhcCcc-cCCEEECCCC-ccCCcChhHhc--CcccCCEEECCC-Ccccc
Confidence 100 1112345566666655 233221111 111222 6666666664 44433222222 367777888777 46655
Q ss_pred HHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCC
Q 006749 538 ASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 585 (632)
Q Consensus 538 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 585 (632)
.....+. .+++|++|+|++|+++......+. .+++|++|++++|+
T Consensus 362 ~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 362 LGDQSFL-GLPNLKELALDTNQLKSVPDGIFD--RLTSLQKIWLHTNP 406 (455)
T ss_dssp ECTTTTT-TCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred cChhhcc-ccccccEEECCCCccccCCHhHhc--cCCcccEEEccCCC
Confidence 4333333 377888888888877654433333 66788888888765
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.75 E-value=6.3e-19 Score=182.58 Aligned_cols=365 Identities=14% Similarity=0.061 Sum_probs=208.1
Q ss_pred CCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhhCCCCcEEeccCCCCCCchHHHHHhhcCCC
Q 006749 178 PSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRN 257 (632)
Q Consensus 178 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~ 257 (632)
++|++|+++++ .+...... .+..+++|++|+++++. +........+..+++|++|+++++. +.......+.. +++
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~-l~~ 104 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNET-SFSRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNG-LAN 104 (455)
T ss_dssp TTCCEEECCSS-CCCEECTT-TTSSCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTT-CTT
T ss_pred CccCEEEecCC-ccCcCChh-HhccCccccEEECcCCc-ccceECcccccccccCCEEeCCCCc-cCccChhhccC-ccc
Confidence 57888888875 44433222 23467778888887742 2210001223346777777777643 33332333333 666
Q ss_pred CcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCcccceecccCCCCCcccchhhcccccCCCC
Q 006749 258 LQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQK 337 (632)
Q Consensus 258 L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 337 (632)
|++|+++++. +..... . ...+..+++
T Consensus 105 L~~L~L~~n~-l~~~~~--------------------------~---------------------------~~~~~~l~~ 130 (455)
T 3v47_A 105 LEVLTLTQCN-LDGAVL--------------------------S---------------------------GNFFKPLTS 130 (455)
T ss_dssp CCEEECTTSC-CBTHHH--------------------------H---------------------------SSTTTTCTT
T ss_pred CCEEeCCCCC-CCcccc--------------------------C---------------------------cccccCccc
Confidence 7777766653 111000 0 000134578
Q ss_pred cceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHH-hcCCCCeEecccCCCcchhhH-----HHH-H
Q 006749 338 LVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSK-AAGSLEILQLEECNRVSQSGI-----LGV-V 410 (632)
Q Consensus 338 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~-~~~~L~~L~l~~~~~~~~~~~-----~~~-~ 410 (632)
|++|+++++. +.......+...+++|++|+++++. +.......+.. ..++|+.|+++++.- ..... ... .
T Consensus 131 L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~ 207 (455)
T 3v47_A 131 LEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITL-QDMNEYWLGWEKCGN 207 (455)
T ss_dssp CCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBC-TTCSTTCTTHHHHCC
T ss_pred CCEEECCCCc-cCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcc-cccchhhcccccccc
Confidence 8888888875 4433222234567899999998864 32211111110 126788888877542 22110 000 0
Q ss_pred hcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHH----------HHHHHhhcCCCCcEEEeccccC
Q 006749 411 SNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNA----------SLAMLGKLCPQLQHVDLSGLYG 480 (632)
Q Consensus 411 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~----------~l~~~~~~~~~L~~L~l~~~~~ 480 (632)
....++|++|++++|................++|+.|++++|...... .........++|++|++++ +.
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~ 286 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK-SK 286 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCS-SC
T ss_pred ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecC-cc
Confidence 012267888888886543322221111223478888888876322110 0000011236899999988 44
Q ss_pred CCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCC
Q 006749 481 ITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAI 560 (632)
Q Consensus 481 l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i 560 (632)
++... ...+..++ +|++|+++++ .++......+. .+++|+.|++++ +.++......+ ..+++|++|+|++|.+
T Consensus 287 l~~~~-~~~~~~l~-~L~~L~Ls~n-~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 287 IFALL-KSVFSHFT-DLEQLTLAQN-EINKIDDNAFW--GLTHLLKLNLSQ-NFLGSIDSRMF-ENLDKLEVLDLSYNHI 359 (455)
T ss_dssp CCEEC-TTTTTTCT-TCCEEECTTS-CCCEECTTTTT--TCTTCCEEECCS-SCCCEECGGGG-TTCTTCCEEECCSSCC
T ss_pred ccccc-hhhcccCC-CCCEEECCCC-cccccChhHhc--CcccCCEEECCC-CccCCcChhHh-cCcccCCEEECCCCcc
Confidence 44321 12233344 8999999985 56554333333 489999999999 47765443333 4589999999999998
Q ss_pred ChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCccccccccccCCCCHH
Q 006749 561 TDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSS 616 (632)
Q Consensus 561 ~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 616 (632)
+......+. .+++|++|++++|. ++..... ....+++|++|++++++--.+.
T Consensus 360 ~~~~~~~~~--~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 360 RALGDQSFL--GLPNLKELALDTNQ-LKSVPDG-IFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CEECTTTTT--TCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSSCBCCCT
T ss_pred cccChhhcc--ccccccEEECCCCc-cccCCHh-HhccCCcccEEEccCCCcccCC
Confidence 876555555 78899999999965 7654332 3345678999999995544443
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.74 E-value=4.8e-20 Score=205.02 Aligned_cols=429 Identities=16% Similarity=0.076 Sum_probs=234.7
Q ss_pred CCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhh
Q 006749 149 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 228 (632)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 228 (632)
+++++|+++++. +..+....+ ..+++|++|+++++........ ..+..+++|++|+|+++ .+... .+..+.+
T Consensus 24 ~~l~~LdLs~N~-i~~i~~~~~----~~l~~L~~LdLs~n~~~~~i~~-~~f~~L~~L~~L~Ls~N-~l~~~-~p~~~~~ 95 (844)
T 3j0a_A 24 NTTERLLLSFNY-IRTVTASSF----PFLEQLQLLELGSQYTPLTIDK-EAFRNLPNLRILDLGSS-KIYFL-HPDAFQG 95 (844)
T ss_dssp TTCCEEEEESCC-CCEECSSSC----SSCCSCSEEEECTTCCCCEECT-TTTSSCTTCCEEECTTC-CCCEE-CTTSSCS
T ss_pred CCcCEEECCCCc-CCccChhHC----cccccCeEEeCCCCCCccccCH-HHhcCCCCCCEEECCCC-cCccc-CHhHccC
Confidence 689999999873 222222222 4689999999998744332212 22358899999999985 45431 1233456
Q ss_pred CCCCcEEeccCCCCCCchHHHH--HhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhc
Q 006749 229 CPNLTSLNIESCSKIGNDGLQA--IGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHY 306 (632)
Q Consensus 229 l~~L~~L~L~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~ 306 (632)
+++|++|+++++. +.+..+.. +. .+++|++|+++++.- ............+. |+.|+++++.+.......+...
T Consensus 96 l~~L~~L~Ls~n~-l~~~~~~~~~~~-~L~~L~~L~Ls~N~l-~~~~~~~~~~~L~~-L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 96 LFHLFELRLYFCG-LSDAVLKDGYFR-NLKALTRLDLSKNQI-RSLYLHPSFGKLNS-LKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp CSSCCCEECTTCC-CSSCCSTTCCCS-SCSSCCEEEEESCCC-CCCCCCGGGGTCSS-CCEEEEESSCCCCCCSGGGHHH
T ss_pred CcccCEeeCcCCC-CCcccccCcccc-ccCCCCEEECCCCcc-cccccchhHhhCCC-CCEEECCCCcCCeeCHHHcccc
Confidence 8999999999864 44322222 33 389999999998753 22222112223333 9999999988765432222111
Q ss_pred -CcccceecccCCCCCcccc--hhhcccccCCCCcceEeccCCCCCChhHHHHHh-------------------------
Q 006749 307 -GKALTNLVLSDLPNVSEKG--FWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMG------------------------- 358 (632)
Q Consensus 307 -~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~------------------------- 358 (632)
.++|+.|+++.+....... +..........+|+.|+++++. +.......+.
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc-CchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 1789999998874322111 1111000112248999998773 2111110110
Q ss_pred ----------h--cCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccC
Q 006749 359 ----------K--GCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCM 426 (632)
Q Consensus 359 ----------~--~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 426 (632)
. ..++|+.|+++++. +.... ...+..+++|+.|+++++. ++..... ....+++|++|++++|.
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-i~~~~~~--~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLN-SRVFETLKDLKVLNLAYNK-INKIADE--AFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCC-CCEEC-SCCSSSCCCCCEEEEESCC-CCEECTT--TTTTCSSCCEEEEESCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCc-ccccC-hhhhhcCCCCCEEECCCCc-CCCCChH--HhcCCCCCCEEECCCCC
Confidence 0 12578888887753 32211 1122356888888888754 3222110 11234789999998865
Q ss_pred CCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCC-
Q 006749 427 GIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGC- 505 (632)
Q Consensus 427 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c- 505 (632)
... + ....+..+++|+.|++++|. +...... ....+++|++|++++ +.++.-.. .+ +|+.|.++++
T Consensus 326 l~~-~--~~~~~~~l~~L~~L~L~~N~-i~~~~~~-~~~~l~~L~~L~Ls~-N~l~~i~~------~~-~L~~L~l~~N~ 392 (844)
T 3j0a_A 326 LGE-L--YSSNFYGLPKVAYIDLQKNH-IAIIQDQ-TFKFLEKLQTLDLRD-NALTTIHF------IP-SIPDIFLSGNK 392 (844)
T ss_dssp CSC-C--CSCSCSSCTTCCEEECCSCC-CCCCCSS-CSCSCCCCCEEEEET-CCSCCCSS------CC-SCSEEEEESCC
T ss_pred CCc-c--CHHHhcCCCCCCEEECCCCC-CCccChh-hhcCCCCCCEEECCC-CCCCcccC------CC-CcchhccCCCC
Confidence 322 1 12345678899999999874 3222111 123468999999988 44432111 11 4555555442
Q ss_pred ------------------CCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhH---
Q 006749 506 ------------------LNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMG--- 564 (632)
Q Consensus 506 ------------------~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~--- 564 (632)
+.++......... .+++|+.|++++ +.++..........+++|+.|++++|.++...
T Consensus 393 l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~-~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~ 470 (844)
T 3j0a_A 393 LVTLPKINLTANLIHLSENRLENLDILYFLL-RVPHLQILILNQ-NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470 (844)
T ss_dssp CCCCCCCCTTCCEEECCSCCCCSSTTHHHHT-TCTTCCEEEEES-CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSC
T ss_pred cccccccccccceeecccCccccCchhhhhh-cCCccceeeCCC-CcccccccccccccCCccccccCCCCccccccccc
Confidence 1222221111222 356666666666 34443211111223566666666666654211
Q ss_pred --HHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCccccccccccCCCCH
Q 006749 565 --ISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINS 615 (632)
Q Consensus 565 --~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 615 (632)
...+ ..+++|+.|+|++|. ++...... ...+++|++|++++ ++++.
T Consensus 471 ~~~~~~--~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~-N~l~~ 518 (844)
T 3j0a_A 471 LCWDVF--EGLSHLQVLYLNHNY-LNSLPPGV-FSHLTALRGLSLNS-NRLTV 518 (844)
T ss_dssp CCSSCS--SCBCCEECCCCCHHH-HTTCCTTS-SSSCCSCSEEEEES-CCCSS
T ss_pred cchhhh--cCcccccEEECCCCc-ccccChhH-ccchhhhheeECCC-CCCCc
Confidence 1112 256778888888754 54332222 23456788888888 45653
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.74 E-value=1.3e-18 Score=184.99 Aligned_cols=422 Identities=14% Similarity=0.075 Sum_probs=243.8
Q ss_pred CCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhh
Q 006749 149 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 228 (632)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 228 (632)
...++++++++. ...++.. ..++|++|+++++ .+...... .+..+++|++|+++++ .++... +..+..
T Consensus 31 ~~~~~l~ls~~~-L~~ip~~-------~~~~L~~L~Ls~N-~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~ 98 (562)
T 3a79_B 31 ELESMVDYSNRN-LTHVPKD-------LPPRTKALSLSQN-SISELRMP-DISFLSELRVLRLSHN-RIRSLD-FHVFLF 98 (562)
T ss_dssp --CCEEECTTSC-CCSCCTT-------SCTTCCEEECCSS-CCCCCCGG-GTTTCTTCCEEECCSC-CCCEEC-TTTTTT
T ss_pred CCCcEEEcCCCC-CccCCCC-------CCCCcCEEECCCC-CccccChh-hhccCCCccEEECCCC-CCCcCC-HHHhCC
Confidence 345888998763 2233331 1379999999987 45433222 2347899999999985 555311 123356
Q ss_pred CCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCc
Q 006749 229 CPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGK 308 (632)
Q Consensus 229 l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~ 308 (632)
+++|++|+++++. ++... .. .+++|++|+++++. +............. +|+.|+++++.+....+..+...
T Consensus 99 l~~L~~L~Ls~N~-l~~lp--~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~L-- 169 (562)
T 3a79_B 99 NQDLEYLDVSHNR-LQNIS--CC--PMASLRHLDLSFND-FDVLPVCKEFGNLT-KLTFLGLSAAKFRQLDLLPVAHL-- 169 (562)
T ss_dssp CTTCCEEECTTSC-CCEEC--SC--CCTTCSEEECCSSC-CSBCCCCGGGGGCT-TCCEEEEECSBCCTTTTGGGTTS--
T ss_pred CCCCCEEECCCCc-CCccC--cc--ccccCCEEECCCCC-ccccCchHhhcccC-cccEEecCCCccccCchhhhhhc--
Confidence 8999999999854 44211 11 48999999999875 33222111122222 38888998888876433332221
Q ss_pred ccceecccCCCCC-cccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCCh---HHHHHHH
Q 006749 309 ALTNLVLSDLPNV-SEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSD---NGLVAFS 384 (632)
Q Consensus 309 ~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~---~~l~~l~ 384 (632)
+|+.|+++++... .......+..+. ...+ .++++++.... .........+++|+.|+++++. ... .+....+
T Consensus 170 ~L~~L~L~~n~l~~~~~~~~~l~~l~-~~~l-~l~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~-~~~~~l~~~~~~l 245 (562)
T 3a79_B 170 HLSCILLDLVSYHIKGGETESLQIPN-TTVL-HLVFHPNSLFS-VQVNMSVNALGHLQLSNIKLND-ENCQRLMTFLSEL 245 (562)
T ss_dssp CEEEEEEEESSCCCCSSSCCEEEECC-EEEE-EEEECSSSCCC-CCCEEEESSEEEEEEEEEECCS-TTHHHHHHHHHHH
T ss_pred eeeEEEeecccccccccCcccccccC-cceE-EEEecCccchh-hhhhhcccccceEEEecccccc-cccchHHHHHHHH
Confidence 3488888776320 111111111100 0111 33444443111 1111112245789999998753 111 1122234
Q ss_pred HhcCCCCeEecccCCCcchhhHHHHHh-cccccccEEeccccCCCCccccccc------------------cC-------
Q 006749 385 KAAGSLEILQLEECNRVSQSGILGVVS-NSASKLKSLTLVKCMGIKDMATEMP------------------ML------- 438 (632)
Q Consensus 385 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~------------------~~------- 438 (632)
..+++|+.+++.++. +....+..... ...++|++|++++|.....+..... .+
T Consensus 246 ~~l~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~ 324 (562)
T 3a79_B 246 TRGPTLLNVTLQHIE-TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL 324 (562)
T ss_dssp HSCSSCEEEEEEEEE-ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHH
T ss_pred hccCcceEEEecCCc-CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhh
Confidence 567899999988754 33333222211 1125899999988753322211110 00
Q ss_pred ---CCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChH-HHH
Q 006749 439 ---SPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDE-VVL 514 (632)
Q Consensus 439 ---~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~-~~~ 514 (632)
....+|++|++++|...... ....+++|++|++++ +.+++... ..+..++ +|+.|+++++ .++.. ...
T Consensus 325 ~~~~~~~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~l~~-n~l~~~~~-~~~~~l~-~L~~L~L~~N-~l~~~~~~~ 396 (562)
T 3a79_B 325 YSVFAEMNIKMLSISDTPFIHMV----CPPSPSSFTFLNFTQ-NVFTDSVF-QGCSTLK-RLQTLILQRN-GLKNFFKVA 396 (562)
T ss_dssp HHHHHTCCCSEEEEESSCCCCCC----CCSSCCCCCEEECCS-SCCCTTTT-TTCCSCS-SCCEEECCSS-CCCBTTHHH
T ss_pred hhhhccCcceEEEccCCCccccc----CccCCCCceEEECCC-Cccccchh-hhhcccC-CCCEEECCCC-CcCCcccch
Confidence 01257999999998643211 114569999999998 45554222 2223344 8999999995 66652 222
Q ss_pred HHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhcc-CCccEEeccCCCCcCcchHH
Q 006749 515 ALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQ-LNLQVLSLSSCSEVSNKSMP 593 (632)
Q Consensus 515 ~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~-~~L~~L~l~~c~~l~~~~~~ 593 (632)
.... .+++|+.|++++ +.++..........+++|++|++++|.+++.... .+ ++|++|++++|. ++. ++
T Consensus 397 ~~~~-~l~~L~~L~l~~-N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~l~~~L~~L~L~~N~-l~~--ip 466 (562)
T 3a79_B 397 LMTK-NMSSLETLDVSL-NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-----CLPPKVKVLDLHNNR-IMS--IP 466 (562)
T ss_dssp HTTT-TCTTCCEEECTT-SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS-----SCCTTCSEEECCSSC-CCC--CC
T ss_pred hhhc-CCCCCCEEECCC-CcCCCccChhhhcCcccCCEEECCCCCCCcchhh-----hhcCcCCEEECCCCc-Ccc--cC
Confidence 2222 589999999999 4665421122234589999999999999864333 33 599999999974 763 33
Q ss_pred HHHHhCCccccccccccCCCCH
Q 006749 594 ALKKLGKTLVGLNLQNCNSINS 615 (632)
Q Consensus 594 ~~~~~~~~L~~L~l~~c~~l~~ 615 (632)
.....+++|++|++++ ++++.
T Consensus 467 ~~~~~l~~L~~L~L~~-N~l~~ 487 (562)
T 3a79_B 467 KDVTHLQALQELNVAS-NQLKS 487 (562)
T ss_dssp TTTTSSCCCSEEECCS-SCCCC
T ss_pred hhhcCCCCCCEEECCC-CCCCC
Confidence 2122667899999999 56764
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=9.6e-20 Score=195.71 Aligned_cols=296 Identities=12% Similarity=0.038 Sum_probs=144.9
Q ss_pred cccccccccc-cch-hHHHHHhh-----cCcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCC-hhHHHH
Q 006749 285 LTRVKLQALN-ITD-FSLAVIGH-----YGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVT-DVSLEA 356 (632)
Q Consensus 285 L~~L~L~~~~-i~~-~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~ 356 (632)
|+.|+++++. +++ .....+.. .+++|+.|+++++... . +.....+..+++|++|+++++. +. ..+
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~--ip~~~~l~~l~~L~~L~L~~N~-l~g~ip--- 347 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-T--FPVETSLQKMKKLGMLECLYNQ-LEGKLP--- 347 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-S--CCCHHHHTTCTTCCEEECCSCC-CEEECC---
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-c--cCchhhhccCCCCCEEeCcCCc-Cccchh---
Confidence 5555555554 444 22222222 2356666666655321 1 0000012345667777776654 32 222
Q ss_pred HhhcCCccceeecCCCCCCChHHHHHHHHhcCC-CCeEecccCCCcchhhHHHHHh-cccccccEEeccccCCCCccccc
Q 006749 357 MGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGS-LEILQLEECNRVSQSGILGVVS-NSASKLKSLTLVKCMGIKDMATE 434 (632)
Q Consensus 357 l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~ 434 (632)
....+++|++|+++++. +. .+...+..+++ |+.|+++++. ++... ..+. ..+++|++|++++|.........
T Consensus 348 ~~~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~-l~~lp--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNK-LKYIP--NIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp CCEEEEEESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSSC-CSSCC--SCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred hhCCCCCCCEEECCCCc-cc--cccHhhhhhcccCcEEEccCCc-Ccccc--hhhhhcccCccCEEECcCCcCCCcchhh
Confidence 12334667777776642 22 11111234566 7777776644 22111 1100 11236777777776543322111
Q ss_pred cc----cCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCc---hhhHHH---HhhccCCccEEecCC
Q 006749 435 MP----MLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITD---VGIFPL---LESCKAGLVKVNLSG 504 (632)
Q Consensus 435 ~~----~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~---~~~~~l---~~~~~~~L~~L~l~~ 504 (632)
.. ....+++|++|++++|. ++... ..+...+++|++|++++ +.++. ..+... ...++ +|++|++++
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp-~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~~~~~~~~l~-~L~~L~Ls~ 497 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQ-ISKFP-KELFSTGSPLSSINLMG-NMLTEIPKNSLKDENENFKNTY-LLTSIDLRF 497 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSC-CCSCC-THHHHTTCCCSEEECCS-SCCSBCCSSSSEETTEECTTGG-GCCEEECCS
T ss_pred hcccccccccCCCCCEEECcCCc-cCcCC-HHHHccCCCCCEEECCC-CCCCCcCHHHhccccccccccC-CccEEECcC
Confidence 11 00145677888887774 33211 22333457788888877 33331 111100 01111 678888877
Q ss_pred CCCCChHHHHHHH-hhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccC------CCCChhHHHhhhhhccCCcc
Q 006749 505 CLNLTDEVVLALA-RLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSK------CAITDMGISALSHAEQLNLQ 577 (632)
Q Consensus 505 c~~l~~~~~~~l~-~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~------~~i~~~~~~~l~~~~~~~L~ 577 (632)
+ .++... ..+. . .+++|+.|++++ +.++.. ...+ ..+++|+.|+|++ |++.......+. .+++|+
T Consensus 498 N-~l~~lp-~~~~~~-~l~~L~~L~Ls~-N~l~~i-p~~~-~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~--~l~~L~ 569 (636)
T 4eco_A 498 N-KLTKLS-DDFRAT-TLPYLVGIDLSY-NSFSKF-PTQP-LNSSTLKGFGIRNQRDAQGNRTLREWPEGIT--LCPSLT 569 (636)
T ss_dssp S-CCCBCC-GGGSTT-TCTTCCEEECCS-SCCSSC-CCGG-GGCSSCCEEECCSCBCTTCCBCCCCCCTTGG--GCSSCC
T ss_pred C-cCCccC-hhhhhc-cCCCcCEEECCC-CCCCCc-Chhh-hcCCCCCEEECCCCcccccCcccccChHHHh--cCCCCC
Confidence 4 444222 1121 1 367788888877 466541 1222 3477888888843 444443333344 567888
Q ss_pred EEeccCCCCcCcchHHHHHHhCCcccccccccc
Q 006749 578 VLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNC 610 (632)
Q Consensus 578 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 610 (632)
.|++++|. ++.. +. ...++|+.|++++|
T Consensus 570 ~L~Ls~N~-l~~i--p~--~~~~~L~~L~Ls~N 597 (636)
T 4eco_A 570 QLQIGSND-IRKV--NE--KITPNISVLDIKDN 597 (636)
T ss_dssp EEECCSSC-CCBC--CS--CCCTTCCEEECCSC
T ss_pred EEECCCCc-CCcc--CH--hHhCcCCEEECcCC
Confidence 88888765 5322 22 13367888888874
No 35
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=1.5e-15 Score=153.11 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=22.2
Q ss_pred CCCCCeeeccCCCCCChHHHHHHH----hcCCCcCeEeccCCCCChhH
Q 006749 521 SETLELLNLDGCRKITDASLVAIG----NNCMFLSYLDVSKCAITDMG 564 (632)
Q Consensus 521 ~~~L~~L~l~~c~~l~~~~~~~l~----~~~~~L~~L~L~~~~i~~~~ 564 (632)
+++|+.|++++ +.+++.++..+. ..+++|+.|++++|.+++.+
T Consensus 273 ~~~L~~L~L~~-n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 273 NIGLQTLRLQY-NEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SCCCCEEECCS-SCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCeEEEECcC-CcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 45666666665 355553332222 23566666666666555444
No 36
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=3.6e-16 Score=157.79 Aligned_cols=137 Identities=18% Similarity=0.240 Sum_probs=59.7
Q ss_pred CCCcEEEeccccCCCchhhHHH---HhhccCCccEEecCCCCCCChHHHHHHHh---hcCCCCCeeeccCCCCCChHHHH
Q 006749 468 PQLQHVDLSGLYGITDVGIFPL---LESCKAGLVKVNLSGCLNLTDEVVLALAR---LHSETLELLNLDGCRKITDASLV 541 (632)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l---~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~~L~~L~l~~c~~l~~~~~~ 541 (632)
++|++|++++ +.+++.++..+ +..++ +|++|++++| .+++.++..+.. ..+++|+.|++++ +.+++.+..
T Consensus 159 ~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~-n~l~~~g~~ 234 (386)
T 2ca6_A 159 PPLRSIICGR-NRLENGSMKEWAKTFQSHR-LLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQD-NTFTHLGSS 234 (386)
T ss_dssp CCCCEEECCS-SCCTGGGHHHHHHHHHHCT-TCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCS-SCCHHHHHH
T ss_pred CCCcEEECCC-CCCCcHHHHHHHHHHHhCC-CcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcC-CCCCcHHHH
Confidence 4555555554 34444444322 22333 5555555553 444433222211 1345555555555 345443332
Q ss_pred HHH---hcCCCcCeEeccCCCCChhHHHhhhh----hccCCccEEeccCCCCcCcchH----HHHHHhCCccccccccc
Q 006749 542 AIG---NNCMFLSYLDVSKCAITDMGISALSH----AEQLNLQVLSLSSCSEVSNKSM----PALKKLGKTLVGLNLQN 609 (632)
Q Consensus 542 ~l~---~~~~~L~~L~L~~~~i~~~~~~~l~~----~~~~~L~~L~l~~c~~l~~~~~----~~~~~~~~~L~~L~l~~ 609 (632)
.+. ..+++|+.|+|++|.+++.+...+.. ..+++|++|+|++|. +++.++ ..+...+++|+.|++++
T Consensus 235 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 222 33455555555555555544433331 014555555555543 443211 11223344555555555
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.70 E-value=8e-17 Score=165.31 Aligned_cols=97 Identities=10% Similarity=0.056 Sum_probs=46.0
Q ss_pred CcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHh
Q 006749 307 GKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKA 386 (632)
Q Consensus 307 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~ 386 (632)
+++|+.|+++.+..+.... ...+++|++|+++++. ++..+ ...+++|+.|+++++ .++... +..
T Consensus 147 l~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~ls~n~-l~~l~----l~~l~~L~~L~l~~N-~l~~~~----l~~ 210 (457)
T 3bz5_A 147 NTQLTELDCHLNKKITKLD------VTPQTQLTTLDCSFNK-ITELD----VSQNKLLNRLNCDTN-NITKLD----LNQ 210 (457)
T ss_dssp CTTCCEEECTTCSCCCCCC------CTTCTTCCEEECCSSC-CCCCC----CTTCTTCCEEECCSS-CCSCCC----CTT
T ss_pred CCcCCEEECCCCCcccccc------cccCCcCCEEECCCCc-cceec----cccCCCCCEEECcCC-cCCeec----ccc
Confidence 3556666665553333221 2344666666666654 33322 234466666666654 232221 224
Q ss_pred cCCCCeEecccCCCcchhhHHHHHhcccccccEEecccc
Q 006749 387 AGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKC 425 (632)
Q Consensus 387 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 425 (632)
+++|+.|+++++. ++... ...+++|+.|+++++
T Consensus 211 l~~L~~L~Ls~N~-l~~ip-----~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 211 NIQLTFLDCSSNK-LTEID-----VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CTTCSEEECCSSC-CSCCC-----CTTCTTCSEEECCSS
T ss_pred CCCCCEEECcCCc-ccccC-----ccccCCCCEEEeeCC
Confidence 4566666665543 22221 112355666666554
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=1.6e-19 Score=195.82 Aligned_cols=223 Identities=17% Similarity=0.090 Sum_probs=128.7
Q ss_pred cCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhc
Q 006749 387 AGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKL 466 (632)
Q Consensus 387 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~ 466 (632)
+++|+.++++.+. +...+..........+|+.+++..+.... ....+..+++|+.+++..+......... ....
T Consensus 370 l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~ 443 (635)
T 4g8a_A 370 LPSLEFLDLSRNG-LSFKGCCSQSDFGTISLKYLDLSFNGVIT----MSSNFLGLEQLEHLDFQHSNLKQMSEFS-VFLS 443 (635)
T ss_dssp CTTCCEEECCSSC-CBEEEECCHHHHSCSCCCEEECCSCSEEE----ECSCCTTCTTCCEEECTTSEEESTTSSC-TTTT
T ss_pred ccccccchhhccc-cccccccccchhhhhhhhhhhcccccccc----ccccccccccccchhhhhcccccccccc-cccc
Confidence 4666666666533 21111111111122567777766543221 1123456778888888766432221111 2234
Q ss_pred CCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhc
Q 006749 467 CPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNN 546 (632)
Q Consensus 467 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 546 (632)
+++++.++++. +.+.... ...+... +.|+.|+++++..........+. .+++|+.|++++ ++++......+ ..
T Consensus 444 l~~l~~l~ls~-n~l~~~~-~~~~~~~-~~L~~L~Ls~N~~~~~~~~~~~~--~l~~L~~L~Ls~-N~L~~l~~~~f-~~ 516 (635)
T 4g8a_A 444 LRNLIYLDISH-THTRVAF-NGIFNGL-SSLEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLSQ-CQLEQLSPTAF-NS 516 (635)
T ss_dssp CTTCCEEECTT-SCCEECC-TTTTTTC-TTCCEEECTTCEEGGGEECSCCT--TCTTCCEEECTT-SCCCEECTTTT-TT
T ss_pred ccccccccccc-ccccccc-ccccccc-hhhhhhhhhhcccccccCchhhh--hccccCEEECCC-CccCCcChHHH-cC
Confidence 57888888876 3332111 1111222 37899999886433221111122 478899999998 47765443333 34
Q ss_pred CCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCccccccccccCCCCHHHHHHHHhcc
Q 006749 547 CMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESL 625 (632)
Q Consensus 547 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~l 625 (632)
+++|++|+|++|+++......+. .+++|++|++++|. ++......+...+++|+.|+++++|-..+..+.++.+++
T Consensus 517 l~~L~~L~Ls~N~l~~l~~~~~~--~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl 592 (635)
T 4g8a_A 517 LSSLQVLNMSHNNFFSLDTFPYK--CLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 592 (635)
T ss_dssp CTTCCEEECTTSCCCBCCCGGGT--TCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred CCCCCEEECCCCcCCCCChhHHh--CCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence 88999999999987765444444 67799999999854 765544455555577999999987766676666666655
No 39
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=1.6e-18 Score=186.18 Aligned_cols=381 Identities=13% Similarity=0.085 Sum_probs=222.4
Q ss_pred HHhCCCCCEeecCCCCCCCHH----------------HHHHHHh--hCCCCcEEeccCCCCCCchHHHHHhhcCCCCcEE
Q 006749 200 AKECHLLEKLELCHCPSISNE----------------SLIAIAE--NCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCL 261 (632)
Q Consensus 200 ~~~~~~L~~L~L~~~~~~~~~----------------~l~~l~~--~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L 261 (632)
+..+++|++|+++++ .++.. .++.... ++++|++|++++|.. .......+.. +++|++|
T Consensus 202 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l-~~~~p~~l~~-l~~L~~L 278 (636)
T 4eco_A 202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-LTKLPTFLKA-LPEMQLI 278 (636)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT-CSSCCTTTTT-CSSCCEE
T ss_pred HhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC-CccChHHHhc-CCCCCEE
Confidence 457889999999984 46641 1333333 688999999998642 2222234444 8899999
Q ss_pred EccCCCCcchhhHHHHHhhh-----hhhcccccccccccchhHHHHHhhcCcccceecccCCCCCcccchhhcccccCCC
Q 006749 262 SIKDCPLVRDQGISSLLSSA-----SSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQ 336 (632)
Q Consensus 262 ~l~~~~~~~~~~~~~l~~~~-----~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 336 (632)
+++++..+....+..-.... ..+|+.|++.++.++..........+++|+.|+++++....... .+..++
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-----~~~~l~ 353 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-----AFGSEI 353 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-----CCEEEE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-----hhCCCC
Confidence 99987634431122111111 12389999999888733221133456889999998874321111 334568
Q ss_pred CcceEeccCCCCCChhHHHHHhhcCCc-cceeecCCCCCCChHHHHHHHHh--cCCCCeEecccCCCcchhhHHHHH---
Q 006749 337 KLVSLTIASGGGVTDVSLEAMGKGCLN-LKQMCLRKCCFVSDNGLVAFSKA--AGSLEILQLEECNRVSQSGILGVV--- 410 (632)
Q Consensus 337 ~L~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~L~~~~~l~~~~l~~l~~~--~~~L~~L~l~~~~~~~~~~~~~~~--- 410 (632)
+|++|+++++. +.. +......+++ |++|+++++. ++. +...... +++|+.|+++++. +.......+.
T Consensus 354 ~L~~L~L~~N~-l~~--lp~~l~~l~~~L~~L~Ls~N~-l~~--lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~ 426 (636)
T 4eco_A 354 KLASLNLAYNQ-ITE--IPANFCGFTEQVENLSFAHNK-LKY--IPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLD 426 (636)
T ss_dssp EESEEECCSSE-EEE--CCTTSEEECTTCCEEECCSSC-CSS--CCSCCCTTCSSCEEEEECCSSC-TTTTTTCSSCTTC
T ss_pred CCCEEECCCCc-ccc--ccHhhhhhcccCcEEEccCCc-Ccc--cchhhhhcccCccCEEECcCCc-CCCcchhhhcccc
Confidence 89999999875 331 1122344577 9999998864 331 1111112 3478999998764 2221100000
Q ss_pred --hcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHh------hcCCCCcEEEeccccCCC
Q 006749 411 --SNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLG------KLCPQLQHVDLSGLYGIT 482 (632)
Q Consensus 411 --~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~------~~~~~L~~L~l~~~~~l~ 482 (632)
...+++|++|++++|... .+ ....+..+++|++|++++|. ++......+. ..+++|+.|++++ +.++
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~-~l--p~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~ 501 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQIS-KF--PKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRF-NKLT 501 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCC-SC--CTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCS-SCCC
T ss_pred cccccCCCCCEEECcCCccC-cC--CHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcC-CcCC
Confidence 002368999999986533 22 11223457899999999885 3311111111 0112899999998 4555
Q ss_pred chhhHHHHh--hccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCC-----CCCChHHHHHHHhcCCCcCeEec
Q 006749 483 DVGIFPLLE--SCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGC-----RKITDASLVAIGNNCMFLSYLDV 555 (632)
Q Consensus 483 ~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c-----~~l~~~~~~~l~~~~~~L~~L~L 555 (632)
.+...+. ..+ +|++|+++++ .++.. ...+. .+++|+.|+++++ +.+.......+ ..+++|++|+|
T Consensus 502 --~lp~~~~~~~l~-~L~~L~Ls~N-~l~~i-p~~~~--~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l-~~l~~L~~L~L 573 (636)
T 4eco_A 502 --KLSDDFRATTLP-YLVGIDLSYN-SFSKF-PTQPL--NSSTLKGFGIRNQRDAQGNRTLREWPEGI-TLCPSLTQLQI 573 (636)
T ss_dssp --BCCGGGSTTTCT-TCCEEECCSS-CCSSC-CCGGG--GCSSCCEEECCSCBCTTCCBCCCCCCTTG-GGCSSCCEEEC
T ss_pred --ccChhhhhccCC-CcCEEECCCC-CCCCc-Chhhh--cCCCCCEEECCCCcccccCcccccChHHH-hcCCCCCEEEC
Confidence 2222222 344 8999999985 55541 22233 4899999999652 23332222223 34999999999
Q ss_pred cCCCCChhHHHhhhhhccCCccEEeccCCCCcCcch----HHHHHHhCCc---cccccccccCCCC
Q 006749 556 SKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKS----MPALKKLGKT---LVGLNLQNCNSIN 614 (632)
Q Consensus 556 ~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~----~~~~~~~~~~---L~~L~l~~c~~l~ 614 (632)
++|.++..... -.++|+.|++++|+ ++... .+.+...... .+..++.+|+.+.
T Consensus 574 s~N~l~~ip~~-----~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 574 GSNDIRKVNEK-----ITPNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CSSCCCBCCSC-----CCTTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CCCcCCccCHh-----HhCcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 99998542211 23699999999986 43322 2333332222 3556788888653
No 40
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=1.9e-17 Score=180.90 Aligned_cols=329 Identities=12% Similarity=0.062 Sum_probs=160.0
Q ss_pred hCCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhh------hhcccccccccccchhHHH
Q 006749 228 NCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSAS------SVLTRVKLQALNITDFSLA 301 (632)
Q Consensus 228 ~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~------~~L~~L~L~~~~i~~~~~~ 301 (632)
++++|++|++++|... ......+.. +++|+.|+++++..+....+..-..... ++|+.|+++++.+......
T Consensus 489 ~L~~L~~L~Ls~N~l~-~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNM-TQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp GCTTCCEEEEESCTTC-CSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred cCCCCCEEECcCCCCC-ccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 4566666666654321 111223333 6666666666654232201111111111 1266666666665522110
Q ss_pred HHhhcCcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCc-cceeecCCCCCCChHHH
Q 006749 302 VIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLN-LKQMCLRKCCFVSDNGL 380 (632)
Q Consensus 302 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~L~~~~~l~~~~l 380 (632)
.....+++|+.|+++++.. .. +..+..+++|+.|+++++. +.. +......+++ |+.|+++++. +.. +
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l-~~-----lp~~~~L~~L~~L~Ls~N~-l~~--lp~~l~~l~~~L~~L~Ls~N~-L~~--l 634 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKV-RH-----LEAFGTNVKLTDLKLDYNQ-IEE--IPEDFCAFTDQVEGLGFSHNK-LKY--I 634 (876)
T ss_dssp HHHTTCTTCCEEECTTSCC-CB-----CCCCCTTSEESEEECCSSC-CSC--CCTTSCEECTTCCEEECCSSC-CCS--C
T ss_pred hhhhcCCCCCEEECCCCCc-cc-----chhhcCCCcceEEECcCCc-ccc--chHHHhhccccCCEEECcCCC-CCc--C
Confidence 1223446677777766532 21 1133456677777777664 331 1111233456 7777777653 321 1
Q ss_pred HHHHHhc--CCCCeEecccCCCcchhh-HH-HHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCC
Q 006749 381 VAFSKAA--GSLEILQLEECNRVSQSG-IL-GVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFG 456 (632)
Q Consensus 381 ~~l~~~~--~~L~~L~l~~~~~~~~~~-~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 456 (632)
+..+..+ ++|+.|+++++.-..... +. .......++|+.|++++|... .+. ...+..+++|+.|++++|. +.
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp--~~~~~~l~~L~~L~Ls~N~-L~ 710 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFP--TELFATGSPISTIILSNNL-MT 710 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCC--HHHHHTTCCCSEEECCSCC-CS
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccC--HHHHccCCCCCEEECCCCc-CC
Confidence 1111112 337777777654211100 00 000011246777777775433 221 1112356777778777764 32
Q ss_pred HHHHHHHh------hcCCCCcEEEeccccCCCchhhHHHHh--hccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeee
Q 006749 457 NASLAMLG------KLCPQLQHVDLSGLYGITDVGIFPLLE--SCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLN 528 (632)
Q Consensus 457 ~~~l~~~~------~~~~~L~~L~l~~~~~l~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~ 528 (632)
......+. ..+++|+.|+++++ .++ .+...+. .++ +|+.|+|+++ .++.. ...+. .+++|+.|+
T Consensus 711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~--~lp~~l~~~~l~-~L~~L~Ls~N-~L~~l-p~~l~--~L~~L~~L~ 782 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLT--SLSDDFRATTLP-YLSNMDVSYN-CFSSF-PTQPL--NSSQLKAFG 782 (876)
T ss_dssp CCCTTSSSCTTSCCTTGGGCCEEECCSS-CCC--CCCGGGSTTTCT-TCCEEECCSS-CCSSC-CCGGG--GCTTCCEEE
T ss_pred ccChHHhccccccccccCCccEEECCCC-CCc--cchHHhhhccCC-CcCEEEeCCC-CCCcc-chhhh--cCCCCCEEE
Confidence 11110000 11237888888773 444 1222222 333 7888888874 45442 11222 478888888
Q ss_pred ccCC-----CCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCc
Q 006749 529 LDGC-----RKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSN 589 (632)
Q Consensus 529 l~~c-----~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~ 589 (632)
++++ +.+.......+ ..+++|+.|+|++|.+...... -.++|+.|+|++|+ +..
T Consensus 783 Ls~N~~ls~N~l~~~ip~~l-~~L~~L~~L~Ls~N~L~~Ip~~-----l~~~L~~LdLs~N~-l~~ 841 (876)
T 4ecn_A 783 IRHQRDAEGNRILRQWPTGI-TTCPSLIQLQIGSNDIRKVDEK-----LTPQLYILDIADNP-NIS 841 (876)
T ss_dssp CCCCBCTTCCBCCCCCCTTG-GGCSSCCEEECCSSCCCBCCSC-----CCSSSCEEECCSCT-TCE
T ss_pred CCCCCCcccccccccChHHH-hcCCCCCEEECCCCCCCccCHh-----hcCCCCEEECCCCC-CCc
Confidence 8762 23322222222 3489999999999987432111 23589999999976 433
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.67 E-value=3.3e-17 Score=165.70 Aligned_cols=315 Identities=15% Similarity=0.088 Sum_probs=180.6
Q ss_pred CCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhhCCCCcEEeccCCCCCCchHHHHHhhcCC
Q 006749 177 CPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCR 256 (632)
Q Consensus 177 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~~~~ 256 (632)
+++++.|++.++ .+..... .++..+++|++|+++++ .++.... ..+..+++|++|+++++. +.......+.. ++
T Consensus 44 l~~l~~l~l~~~-~l~~l~~-~~~~~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-l~ 117 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPA-ALLDSFRQVELLNLNDL-QIEEIDT-YAFAYAHTIQKLYMGFNA-IRYLPPHVFQN-VP 117 (390)
T ss_dssp GCCCSEEEEESC-EESEECT-HHHHHCCCCSEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTT-CT
T ss_pred cCCceEEEecCC-chhhCCh-hHhcccccCcEEECCCC-cccccCh-hhccCCCCcCEEECCCCC-CCcCCHHHhcC-CC
Confidence 578888888875 3443322 23457888888888874 4443111 122457788888887643 33322223333 67
Q ss_pred CCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCcccceecccCCCCCcccchhhcccccCCC
Q 006749 257 NLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQ 336 (632)
Q Consensus 257 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 336 (632)
+|++|+++++. +. . +... ....++
T Consensus 118 ~L~~L~L~~n~-l~----------------~---------------------------------l~~~------~~~~l~ 141 (390)
T 3o6n_A 118 LLTVLVLERND-LS----------------S---------------------------------LPRG------IFHNTP 141 (390)
T ss_dssp TCCEEECCSSC-CC----------------C---------------------------------CCTT------TTTTCT
T ss_pred CCCEEECCCCc-cC----------------c---------------------------------CCHH------HhcCCC
Confidence 77777776643 11 0 0000 012357
Q ss_pred CcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhccccc
Q 006749 337 KLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASK 416 (632)
Q Consensus 337 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 416 (632)
+|++|+++++. +...... ....+++|++|+++++ .++... ...+++|+.|+++++. ++... ..++
T Consensus 142 ~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~----~~~l~~L~~L~l~~n~-l~~~~-------~~~~ 206 (390)
T 3o6n_A 142 KLTTLSMSNNN-LERIEDD-TFQATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNL-LSTLA-------IPIA 206 (390)
T ss_dssp TCCEEECCSSC-CCBCCTT-TTSSCTTCCEEECCSS-CCSBCC----GGGCTTCSEEECCSSC-CSEEE-------CCSS
T ss_pred CCcEEECCCCc-cCccChh-hccCCCCCCEEECCCC-cCCccc----cccccccceeeccccc-ccccC-------CCCc
Confidence 88888888775 4332221 2245689999999886 344332 2356889999988754 33221 2268
Q ss_pred ccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCC
Q 006749 417 LKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAG 496 (632)
Q Consensus 417 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 496 (632)
|++|+++++. +..+. ...+++|+.|++++|..... .....+++|++|++++ +.++..... .+...+ +
T Consensus 207 L~~L~l~~n~-l~~~~-----~~~~~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~Ls~-n~l~~~~~~-~~~~l~-~ 273 (390)
T 3o6n_A 207 VEELDASHNS-INVVR-----GPVNVELTILKLQHNNLTDT----AWLLNYPGLVEVDLSY-NELEKIMYH-PFVKMQ-R 273 (390)
T ss_dssp CSEEECCSSC-CCEEE-----CCCCSSCCEEECCSSCCCCC----GGGGGCTTCSEEECCS-SCCCEEESG-GGTTCS-S
T ss_pred ceEEECCCCe-eeecc-----ccccccccEEECCCCCCccc----HHHcCCCCccEEECCC-CcCCCcChh-Hccccc-c
Confidence 8889888854 33221 12357888888888753322 1234568888888887 444432211 122233 7
Q ss_pred ccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCc
Q 006749 497 LVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNL 576 (632)
Q Consensus 497 L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L 576 (632)
|++|+++++ .++..... .. .+++|+.|++++| .++.... .+ ..+++|+.|++++|+++... + ..+++|
T Consensus 274 L~~L~L~~n-~l~~~~~~--~~-~l~~L~~L~L~~n-~l~~~~~-~~-~~l~~L~~L~L~~N~i~~~~---~--~~~~~L 341 (390)
T 3o6n_A 274 LERLYISNN-RLVALNLY--GQ-PIPTLKVLDLSHN-HLLHVER-NQ-PQFDRLENLYLDHNSIVTLK---L--STHHTL 341 (390)
T ss_dssp CCEEECCSS-CCCEEECS--SS-CCTTCCEEECCSS-CCCCCGG-GH-HHHTTCSEEECCSSCCCCCC---C--CTTCCC
T ss_pred CCEEECCCC-cCcccCcc--cC-CCCCCCEEECCCC-cceecCc-cc-cccCcCCEEECCCCccceeC---c--hhhccC
Confidence 888888774 44432111 11 4677888888774 5543221 12 23677888888888776643 2 256678
Q ss_pred cEEeccCCCCcCcchHHH
Q 006749 577 QVLSLSSCSEVSNKSMPA 594 (632)
Q Consensus 577 ~~L~l~~c~~l~~~~~~~ 594 (632)
+.|++++|+ ++......
T Consensus 342 ~~L~l~~N~-~~~~~~~~ 358 (390)
T 3o6n_A 342 KNLTLSHND-WDCNSLRA 358 (390)
T ss_dssp SEEECCSSC-EEHHHHHH
T ss_pred CEEEcCCCC-ccchhHHH
Confidence 888888765 54444333
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.66 E-value=1.1e-16 Score=164.24 Aligned_cols=181 Identities=15% Similarity=0.065 Sum_probs=86.0
Q ss_pred cCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhhCCCCcEEeccCCCCCCchHHHHHhhcC
Q 006749 176 GCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFC 255 (632)
Q Consensus 176 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~~~ 255 (632)
.+++|++|+++++ .+.... ...+++|++|+++++ .++.. . ...+++|++|+++++ .++... +.. +
T Consensus 62 ~l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N-~l~~~--~--~~~l~~L~~L~L~~N-~l~~l~---~~~-l 126 (457)
T 3bz5_A 62 KLTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSN-KLTNL--D--VTPLTKLTYLNCDTN-KLTKLD---VSQ-N 126 (457)
T ss_dssp GCTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSS-CCSCC--C--CTTCTTCCEEECCSS-CCSCCC---CTT-C
T ss_pred ccCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCC-CCcee--e--cCCCCcCCEEECCCC-cCCeec---CCC-C
Confidence 4566666666654 333321 234566666666653 33331 1 234566666666654 232221 222 5
Q ss_pred CCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccc-cchhHHHHHhhcCcccceecccCCCCCcccchhhcccccC
Q 006749 256 RNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALN-ITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQG 334 (632)
Q Consensus 256 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~-i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 334 (632)
++|++|+++++. +.... ....+ +|+.|++..+. +.... ...+++|+.|+++++. +.... ...
T Consensus 127 ~~L~~L~l~~N~-l~~l~----l~~l~-~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~-l~~l~------l~~ 189 (457)
T 3bz5_A 127 PLLTYLNCARNT-LTEID----VSHNT-QLTELDCHLNKKITKLD----VTPQTQLTTLDCSFNK-ITELD------VSQ 189 (457)
T ss_dssp TTCCEEECTTSC-CSCCC----CTTCT-TCCEEECTTCSCCCCCC----CTTCTTCCEEECCSSC-CCCCC------CTT
T ss_pred CcCCEEECCCCc-cceec----cccCC-cCCEEECCCCCcccccc----cccCCcCCEEECCCCc-cceec------ccc
Confidence 666666665543 22211 11111 25555555552 22211 1234566666666552 22111 234
Q ss_pred CCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccC
Q 006749 335 LQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEEC 398 (632)
Q Consensus 335 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 398 (632)
+++|++|+++++. +.... ...+++|+.|+++++ .++.. . ...+++|+.|+++++
T Consensus 190 l~~L~~L~l~~N~-l~~~~----l~~l~~L~~L~Ls~N-~l~~i--p--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 190 NKLLNRLNCDTNN-ITKLD----LNQNIQLTFLDCSSN-KLTEI--D--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CTTCCEEECCSSC-CSCCC----CTTCTTCSEEECCSS-CCSCC--C--CTTCTTCSEEECCSS
T ss_pred CCCCCEEECcCCc-CCeec----cccCCCCCEEECcCC-ccccc--C--ccccCCCCEEEeeCC
Confidence 5666666666654 33321 234566777777664 33331 1 234566777766664
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.63 E-value=1.7e-16 Score=160.40 Aligned_cols=316 Identities=16% Similarity=0.086 Sum_probs=195.5
Q ss_pred CCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhh
Q 006749 149 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 228 (632)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 228 (632)
++++.|++.++. ...++... ...+++|++|+++++ .+....... +..+++|++|+++++ .++.. .+..+..
T Consensus 45 ~~l~~l~l~~~~-l~~l~~~~----~~~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~-~~~~~~~ 115 (390)
T 3o6n_A 45 NNQKIVTFKNST-MRKLPAAL----LDSFRQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFN-AIRYL-PPHVFQN 115 (390)
T ss_dssp CCCSEEEEESCE-ESEECTHH----HHHCCCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCCC-CTTTTTT
T ss_pred CCceEEEecCCc-hhhCChhH----hcccccCcEEECCCC-cccccChhh-ccCCCCcCEEECCCC-CCCcC-CHHHhcC
Confidence 688999998762 22333322 246789999999886 454433222 347889999999884 44431 1122346
Q ss_pred CCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCc
Q 006749 229 CPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGK 308 (632)
Q Consensus 229 l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~ 308 (632)
+++|++|+++++. +.......+. .+++|++|+++++.- .. +.
T Consensus 116 l~~L~~L~L~~n~-l~~l~~~~~~-~l~~L~~L~L~~n~l-~~----------------~~------------------- 157 (390)
T 3o6n_A 116 VPLLTVLVLERND-LSSLPRGIFH-NTPKLTTLSMSNNNL-ER----------------IE------------------- 157 (390)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTT-TCTTCCEEECCSSCC-CB----------------CC-------------------
T ss_pred CCCCCEEECCCCc-cCcCCHHHhc-CCCCCcEEECCCCcc-Cc----------------cC-------------------
Confidence 8899999999753 4322211123 378888888877541 10 00
Q ss_pred ccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcC
Q 006749 309 ALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAG 388 (632)
Q Consensus 309 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~ 388 (632)
. ..+..+++|++|+++++. +.... ...+++|+.|+++++ .++.. ...+
T Consensus 158 --------------~------~~~~~l~~L~~L~l~~n~-l~~~~----~~~l~~L~~L~l~~n-~l~~~------~~~~ 205 (390)
T 3o6n_A 158 --------------D------DTFQATTSLQNLQLSSNR-LTHVD----LSLIPSLFHANVSYN-LLSTL------AIPI 205 (390)
T ss_dssp --------------T------TTTSSCTTCCEEECCSSC-CSBCC----GGGCTTCSEEECCSS-CCSEE------ECCS
T ss_pred --------------h------hhccCCCCCCEEECCCCc-CCccc----cccccccceeecccc-ccccc------CCCC
Confidence 0 001235778888888765 44332 234588999999875 33321 1346
Q ss_pred CCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCC
Q 006749 389 SLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCP 468 (632)
Q Consensus 389 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~ 468 (632)
+|+.|+++++. +..... ..+++|+.|+++++... +. ..+..+++|++|++++|. +.......+ ..++
T Consensus 206 ~L~~L~l~~n~-l~~~~~-----~~~~~L~~L~l~~n~l~-~~----~~l~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~ 272 (390)
T 3o6n_A 206 AVEELDASHNS-INVVRG-----PVNVELTILKLQHNNLT-DT----AWLLNYPGLVEVDLSYNE-LEKIMYHPF-VKMQ 272 (390)
T ss_dssp SCSEEECCSSC-CCEEEC-----CCCSSCCEEECCSSCCC-CC----GGGGGCTTCSEEECCSSC-CCEEESGGG-TTCS
T ss_pred cceEEECCCCe-eeeccc-----cccccccEEECCCCCCc-cc----HHHcCCCCccEEECCCCc-CCCcChhHc-cccc
Confidence 79999988754 332211 12378999999886533 22 345678999999999885 332212222 3468
Q ss_pred CCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCC
Q 006749 469 QLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCM 548 (632)
Q Consensus 469 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 548 (632)
+|++|++++ +.++... ......+ +|++|++++| .+...... +. .+++|+.|++++ +.++... ...++
T Consensus 273 ~L~~L~L~~-n~l~~~~--~~~~~l~-~L~~L~L~~n-~l~~~~~~-~~--~l~~L~~L~L~~-N~i~~~~----~~~~~ 339 (390)
T 3o6n_A 273 RLERLYISN-NRLVALN--LYGQPIP-TLKVLDLSHN-HLLHVERN-QP--QFDRLENLYLDH-NSIVTLK----LSTHH 339 (390)
T ss_dssp SCCEEECCS-SCCCEEE--CSSSCCT-TCCEEECCSS-CCCCCGGG-HH--HHTTCSEEECCS-SCCCCCC----CCTTC
T ss_pred cCCEEECCC-CcCcccC--cccCCCC-CCCEEECCCC-cceecCcc-cc--ccCcCCEEECCC-CccceeC----chhhc
Confidence 999999988 4554321 1112233 8999999886 45433211 22 368999999998 4666543 34588
Q ss_pred CcCeEeccCCCCChhHHHhhh
Q 006749 549 FLSYLDVSKCAITDMGISALS 569 (632)
Q Consensus 549 ~L~~L~L~~~~i~~~~~~~l~ 569 (632)
+|+.|++++|++.......+.
T Consensus 340 ~L~~L~l~~N~~~~~~~~~~~ 360 (390)
T 3o6n_A 340 TLKNLTLSHNDWDCNSLRALF 360 (390)
T ss_dssp CCSEEECCSSCEEHHHHHHHT
T ss_pred cCCEEEcCCCCccchhHHHHH
Confidence 999999999998887776665
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.62 E-value=5.7e-17 Score=168.76 Aligned_cols=167 Identities=19% Similarity=0.106 Sum_probs=101.5
Q ss_pred ccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhcc
Q 006749 415 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 494 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 494 (632)
++|+.|+++++.. ..+ ....+..+++|++|++++|..+.......+ ...+|++|++++ +.++.... ..+..++
T Consensus 176 ~~L~~L~l~~n~i-~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~-n~l~~~~~-~~~~~l~ 248 (477)
T 2id5_A 176 HGLIVLRLRHLNI-NAI--RDYSFKRLYRLKVLEISHWPYLDTMTPNCL--YGLNLTSLSITH-CNLTAVPY-LAVRHLV 248 (477)
T ss_dssp TTCCEEEEESCCC-CEE--CTTCSCSCTTCCEEEEECCTTCCEECTTTT--TTCCCSEEEEES-SCCCSCCH-HHHTTCT
T ss_pred CCCcEEeCCCCcC-cEe--ChhhcccCcccceeeCCCCccccccCcccc--cCccccEEECcC-CcccccCH-HHhcCcc
Confidence 5556666555332 111 112345788899999988765442221111 125899999988 44543221 2233444
Q ss_pred CCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccC
Q 006749 495 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQL 574 (632)
Q Consensus 495 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 574 (632)
+|+.|+++++ .++......+. .+++|+.|++++ +.++......+ ..+++|+.|+|++|.++......+. .++
T Consensus 249 -~L~~L~Ls~n-~l~~~~~~~~~--~l~~L~~L~L~~-n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~ 320 (477)
T 2id5_A 249 -YLRFLNLSYN-PISTIEGSMLH--ELLRLQEIQLVG-GQLAVVEPYAF-RGLNYLRVLNVSGNQLTTLEESVFH--SVG 320 (477)
T ss_dssp -TCCEEECCSS-CCCEECTTSCT--TCTTCCEEECCS-SCCSEECTTTB-TTCTTCCEEECCSSCCSCCCGGGBS--CGG
T ss_pred -ccCeeECCCC-cCCccChhhcc--ccccCCEEECCC-CccceECHHHh-cCcccCCEEECCCCcCceeCHhHcC--CCc
Confidence 8999999885 45543333233 478899999988 46665433333 3488899999999887765444444 677
Q ss_pred CccEEeccCCCCcCcchHHHHH
Q 006749 575 NLQVLSLSSCSEVSNKSMPALK 596 (632)
Q Consensus 575 ~L~~L~l~~c~~l~~~~~~~~~ 596 (632)
+|+.|++++|+-..+....++.
T Consensus 321 ~L~~L~l~~N~l~c~c~~~~~~ 342 (477)
T 2id5_A 321 NLETLILDSNPLACDCRLLWVF 342 (477)
T ss_dssp GCCEEECCSSCEECSGGGHHHH
T ss_pred ccCEEEccCCCccCccchHhHH
Confidence 8899999887744454455543
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.61 E-value=2.4e-16 Score=164.08 Aligned_cols=136 Identities=20% Similarity=0.183 Sum_probs=90.8
Q ss_pred cccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhc
Q 006749 414 ASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESC 493 (632)
Q Consensus 414 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 493 (632)
+++|++|++++|.....+... .....+|++|++++|. ++......+ ..+++|+.|++++ +.++..... .+..+
T Consensus 199 l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~Ls~-n~l~~~~~~-~~~~l 271 (477)
T 2id5_A 199 LYRLKVLEISHWPYLDTMTPN---CLYGLNLTSLSITHCN-LTAVPYLAV-RHLVYLRFLNLSY-NPISTIEGS-MLHEL 271 (477)
T ss_dssp CTTCCEEEEECCTTCCEECTT---TTTTCCCSEEEEESSC-CCSCCHHHH-TTCTTCCEEECCS-SCCCEECTT-SCTTC
T ss_pred CcccceeeCCCCccccccCcc---cccCccccEEECcCCc-ccccCHHHh-cCccccCeeECCC-CcCCccChh-hcccc
Confidence 377888888887666554322 2234589999999985 443333333 4569999999998 445432221 12334
Q ss_pred cCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCCh
Q 006749 494 KAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD 562 (632)
Q Consensus 494 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 562 (632)
+ +|+.|+++++ .++......+. .+++|+.|++++ +.++...... ...+++|+.|+|++|++..
T Consensus 272 ~-~L~~L~L~~n-~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 272 L-RLQEIQLVGG-QLAVVEPYAFR--GLNYLRVLNVSG-NQLTTLEESV-FHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp T-TCCEEECCSS-CCSEECTTTBT--TCTTCCEEECCS-SCCSCCCGGG-BSCGGGCCEEECCSSCEEC
T ss_pred c-cCCEEECCCC-ccceECHHHhc--CcccCCEEECCC-CcCceeCHhH-cCCCcccCEEEccCCCccC
Confidence 4 8999999985 56554333333 489999999999 5776543322 2458999999999998753
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=7.1e-16 Score=164.70 Aligned_cols=315 Identities=15% Similarity=0.101 Sum_probs=191.0
Q ss_pred CCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhhCCCCcEEeccCCCCCCchHHHHHhhcCC
Q 006749 177 CPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCR 256 (632)
Q Consensus 177 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~~~~ 256 (632)
+++++.+++.++ .+.... ..++..+++|++|+++++ .++.... ..+..+++|++|+++++. ++......+.. ++
T Consensus 50 l~~l~~l~l~~~-~l~~lp-~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-l~ 123 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLP-AALLDSFRQVELLNLNDL-QIEEIDT-YAFAYAHTIQKLYMGFNA-IRYLPPHVFQN-VP 123 (597)
T ss_dssp GCCCSEEEESSC-EESEEC-THHHHHCCCCSEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTT-CT
T ss_pred CCCceEEEeeCC-CCCCcC-HHHHccCCCCcEEECCCC-CCCCCCh-HHhcCCCCCCEEECCCCc-CCCCCHHHHcC-CC
Confidence 467888888775 333322 233457788888888874 4443111 123457778888887643 43322222333 67
Q ss_pred CCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCcccceecccCCCCCcccchhhcccccCCC
Q 006749 257 NLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQ 336 (632)
Q Consensus 257 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 336 (632)
+|++|+++++. +.. +... .+..++
T Consensus 124 ~L~~L~L~~n~-l~~-------------------------------------------------l~~~------~~~~l~ 147 (597)
T 3oja_B 124 LLTVLVLERND-LSS-------------------------------------------------LPRG------IFHNTP 147 (597)
T ss_dssp TCCEEECCSSC-CCC-------------------------------------------------CCTT------TTTTCT
T ss_pred CCCEEEeeCCC-CCC-------------------------------------------------CCHH------HhccCC
Confidence 77777776653 110 0000 013457
Q ss_pred CcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhccccc
Q 006749 337 KLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASK 416 (632)
Q Consensus 337 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 416 (632)
+|++|+++++. +....... ...+++|++|+++++ .++... ...+++|+.|+++++. ++..+ ..++
T Consensus 148 ~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~l~~n~-l~~l~-------~~~~ 212 (597)
T 3oja_B 148 KLTTLSMSNNN-LERIEDDT-FQATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNL-LSTLA-------IPIA 212 (597)
T ss_dssp TCCEEECCSSC-CCBCCTTT-TTTCTTCCEEECTTS-CCSBCC----GGGCTTCSEEECCSSC-CSEEE-------CCTT
T ss_pred CCCEEEeeCCc-CCCCChhh-hhcCCcCcEEECcCC-CCCCcC----hhhhhhhhhhhcccCc-ccccc-------CCch
Confidence 88888888875 44332222 245689999999986 444332 2357899999998754 33221 2378
Q ss_pred ccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCC
Q 006749 417 LKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAG 496 (632)
Q Consensus 417 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 496 (632)
|+.|+++++. +..+. ....++|+.|++++|..... .....+++|+.|++++ +.++...... +..++ +
T Consensus 213 L~~L~ls~n~-l~~~~-----~~~~~~L~~L~L~~n~l~~~----~~l~~l~~L~~L~Ls~-N~l~~~~~~~-~~~l~-~ 279 (597)
T 3oja_B 213 VEELDASHNS-INVVR-----GPVNVELTILKLQHNNLTDT----AWLLNYPGLVEVDLSY-NELEKIMYHP-FVKMQ-R 279 (597)
T ss_dssp CSEEECCSSC-CCEEE-----CSCCSCCCEEECCSSCCCCC----GGGGGCTTCSEEECCS-SCCCEEESGG-GTTCS-S
T ss_pred hheeeccCCc-ccccc-----cccCCCCCEEECCCCCCCCC----hhhccCCCCCEEECCC-CccCCCCHHH-hcCcc-C
Confidence 9999999864 33221 12347899999999864332 2234569999999998 4554332222 22333 8
Q ss_pred ccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCc
Q 006749 497 LVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNL 576 (632)
Q Consensus 497 L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L 576 (632)
|+.|+|+++ .++.... ... .+++|+.|++++| .++... ..+ ..+++|+.|+|++|.++... + ..+++|
T Consensus 280 L~~L~Ls~N-~l~~l~~--~~~-~l~~L~~L~Ls~N-~l~~i~-~~~-~~l~~L~~L~L~~N~l~~~~---~--~~~~~L 347 (597)
T 3oja_B 280 LERLYISNN-RLVALNL--YGQ-PIPTLKVLDLSHN-HLLHVE-RNQ-PQFDRLENLYLDHNSIVTLK---L--STHHTL 347 (597)
T ss_dssp CCEEECTTS-CCCEEEC--SSS-CCTTCCEEECCSS-CCCCCG-GGH-HHHTTCSEEECCSSCCCCCC---C--CTTCCC
T ss_pred CCEEECCCC-CCCCCCc--ccc-cCCCCcEEECCCC-CCCccC-ccc-ccCCCCCEEECCCCCCCCcC---h--hhcCCC
Confidence 999999885 5544211 112 4789999999884 665432 122 34788999999999887653 2 267789
Q ss_pred cEEeccCCCCcCcchHHH
Q 006749 577 QVLSLSSCSEVSNKSMPA 594 (632)
Q Consensus 577 ~~L~l~~c~~l~~~~~~~ 594 (632)
+.|++++|+ ++......
T Consensus 348 ~~L~l~~N~-~~~~~~~~ 364 (597)
T 3oja_B 348 KNLTLSHND-WDCNSLRA 364 (597)
T ss_dssp SEEECCSSC-EEHHHHHH
T ss_pred CEEEeeCCC-CCChhHHH
Confidence 999999976 55444433
No 47
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=1.3e-14 Score=144.85 Aligned_cols=247 Identities=15% Similarity=0.124 Sum_probs=123.5
Q ss_pred CCCcceEeccCCCCCChhHHH---HHhhcCC-ccceeecCCCCCCChHHH---HHHHHhc-CCCCeEecccCCCcchhhH
Q 006749 335 LQKLVSLTIASGGGVTDVSLE---AMGKGCL-NLKQMCLRKCCFVSDNGL---VAFSKAA-GSLEILQLEECNRVSQSGI 406 (632)
Q Consensus 335 ~~~L~~L~l~~~~~~~~~~~~---~l~~~~~-~L~~L~L~~~~~l~~~~l---~~l~~~~-~~L~~L~l~~~~~~~~~~~ 406 (632)
.++|++|+++++. +++.... .....++ +|++|+++++ .+++.+. ....... ++|++|++++|. ++..+.
T Consensus 21 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~ 97 (362)
T 3goz_A 21 PHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSS 97 (362)
T ss_dssp CTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred CCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHH
Confidence 3458888888775 5444332 2234456 7888888875 4544333 3333333 778888888765 443332
Q ss_pred ---HHHHhcccccccEEeccccCCCCcccccc--ccCCC-CCCCCeEeccCCCCCCHH---HHHHHhhcCC-CCcEEEec
Q 006749 407 ---LGVVSNSASKLKSLTLVKCMGIKDMATEM--PMLSP-NCSLRSLSIRNCPGFGNA---SLAMLGKLCP-QLQHVDLS 476 (632)
Q Consensus 407 ---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~-~~~L~~L~l~~~~~l~~~---~l~~~~~~~~-~L~~L~l~ 476 (632)
...+....++|++|++++|. +++..... ..+.. +++|++|++++|. +++. .+.......+ +|++|+++
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeec
Confidence 22222222577777777754 22221110 01222 3467777776663 3322 2222222233 67777766
Q ss_pred cccCCCchhhHHH---HhhccCCccEEecCCCCCCChHHHHHHHhh---cCCCCCeeeccCCCCCChHHHHHH---HhcC
Q 006749 477 GLYGITDVGIFPL---LESCKAGLVKVNLSGCLNLTDEVVLALARL---HSETLELLNLDGCRKITDASLVAI---GNNC 547 (632)
Q Consensus 477 ~~~~l~~~~~~~l---~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~~L~~L~l~~c~~l~~~~~~~l---~~~~ 547 (632)
+ +.+++.+...+ +..++++|++|++++| .+++.+...+... ..++|+.|++++ +.+++.+...+ ...+
T Consensus 176 ~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 176 G-NNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCL-NCLHGPSLENLKLLKDSL 252 (362)
T ss_dssp T-SCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCS-SCCCCCCHHHHHHTTTTT
T ss_pred C-CCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcC-CCCCcHHHHHHHHHHhcC
Confidence 6 34444333322 2223236666666664 4444322222110 134666666666 45655433322 2445
Q ss_pred CCcCeEeccCCC---CChhHHHhhhh--hccCCccEEeccCCCCcCcc
Q 006749 548 MFLSYLDVSKCA---ITDMGISALSH--AEQLNLQVLSLSSCSEVSNK 590 (632)
Q Consensus 548 ~~L~~L~L~~~~---i~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~ 590 (632)
++|+.|+|++|. +++.++..+.. ..+++|+.|++++++ +.+.
T Consensus 253 ~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~-l~~~ 299 (362)
T 3goz_A 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IHPS 299 (362)
T ss_dssp TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB-CCGG
T ss_pred CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc-CCCc
Confidence 666666666665 55544444431 144556666666644 5443
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=2.2e-15 Score=160.87 Aligned_cols=316 Identities=15% Similarity=0.077 Sum_probs=206.2
Q ss_pred CCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhh
Q 006749 149 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 228 (632)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 228 (632)
.+++.+++.++. ...++... ...+++|++|+++++ .+....... +..+++|++|+++++ .++.. .+..+.+
T Consensus 51 ~~l~~l~l~~~~-l~~lp~~~----~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~-~~~~~~~ 121 (597)
T 3oja_B 51 NNQKIVTFKNST-MRKLPAAL----LDSFRQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFN-AIRYL-PPHVFQN 121 (597)
T ss_dssp CCCSEEEESSCE-ESEECTHH----HHHCCCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCCC-CTTTTTT
T ss_pred CCceEEEeeCCC-CCCcCHHH----HccCCCCcEEECCCC-CCCCCChHH-hcCCCCCCEEECCCC-cCCCC-CHHHHcC
Confidence 688999998762 22333322 246899999999987 455433222 347899999999985 45431 1123356
Q ss_pred CCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCc
Q 006749 229 CPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGK 308 (632)
Q Consensus 229 l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~ 308 (632)
+++|++|+++++. ++......+. .+++|++|+++++.- ...
T Consensus 122 l~~L~~L~L~~n~-l~~l~~~~~~-~l~~L~~L~Ls~N~l-~~~------------------------------------ 162 (597)
T 3oja_B 122 VPLLTVLVLERND-LSSLPRGIFH-NTPKLTTLSMSNNNL-ERI------------------------------------ 162 (597)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTT-TCTTCCEEECCSSCC-CBC------------------------------------
T ss_pred CCCCCEEEeeCCC-CCCCCHHHhc-cCCCCCEEEeeCCcC-CCC------------------------------------
Confidence 8999999999863 4432222223 388899999887641 100
Q ss_pred ccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcC
Q 006749 309 ALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAG 388 (632)
Q Consensus 309 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~ 388 (632)
.+. .+..+++|++|+++++. +.... ...+++|+.|+++++ .++.. ...+
T Consensus 163 -------------~~~------~~~~l~~L~~L~L~~N~-l~~~~----~~~l~~L~~L~l~~n-~l~~l------~~~~ 211 (597)
T 3oja_B 163 -------------EDD------TFQATTSLQNLQLSSNR-LTHVD----LSLIPSLFHANVSYN-LLSTL------AIPI 211 (597)
T ss_dssp -------------CTT------TTTTCTTCCEEECTTSC-CSBCC----GGGCTTCSEEECCSS-CCSEE------ECCT
T ss_pred -------------Chh------hhhcCCcCcEEECcCCC-CCCcC----hhhhhhhhhhhcccC-ccccc------cCCc
Confidence 000 01245788888888875 44433 234699999999986 34331 1347
Q ss_pred CCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCC
Q 006749 389 SLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCP 468 (632)
Q Consensus 389 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~ 468 (632)
+|+.|+++++. +.... ....++|+.|++++|.... . ..+..+++|+.|++++|. +.......+ ..++
T Consensus 212 ~L~~L~ls~n~-l~~~~-----~~~~~~L~~L~L~~n~l~~-~----~~l~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~ 278 (597)
T 3oja_B 212 AVEELDASHNS-INVVR-----GPVNVELTILKLQHNNLTD-T----AWLLNYPGLVEVDLSYNE-LEKIMYHPF-VKMQ 278 (597)
T ss_dssp TCSEEECCSSC-CCEEE-----CSCCSCCCEEECCSSCCCC-C----GGGGGCTTCSEEECCSSC-CCEEESGGG-TTCS
T ss_pred hhheeeccCCc-ccccc-----cccCCCCCEEECCCCCCCC-C----hhhccCCCCCEEECCCCc-cCCCCHHHh-cCcc
Confidence 89999999865 33221 1123789999999975433 2 446689999999999986 332222222 3469
Q ss_pred CCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCC
Q 006749 469 QLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCM 548 (632)
Q Consensus 469 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 548 (632)
+|+.|++++ +.++.. ......++ +|+.|+|++| .+.... ..+. .+++|+.|++++| .+.... ...++
T Consensus 279 ~L~~L~Ls~-N~l~~l--~~~~~~l~-~L~~L~Ls~N-~l~~i~-~~~~--~l~~L~~L~L~~N-~l~~~~----~~~~~ 345 (597)
T 3oja_B 279 RLERLYISN-NRLVAL--NLYGQPIP-TLKVLDLSHN-HLLHVE-RNQP--QFDRLENLYLDHN-SIVTLK----LSTHH 345 (597)
T ss_dssp SCCEEECTT-SCCCEE--ECSSSCCT-TCCEEECCSS-CCCCCG-GGHH--HHTTCSEEECCSS-CCCCCC----CCTTC
T ss_pred CCCEEECCC-CCCCCC--CcccccCC-CCcEEECCCC-CCCccC-cccc--cCCCCCEEECCCC-CCCCcC----hhhcC
Confidence 999999998 455431 11222334 8999999996 454322 1223 4789999999994 666543 34589
Q ss_pred CcCeEeccCCCCChhHHHhhh
Q 006749 549 FLSYLDVSKCAITDMGISALS 569 (632)
Q Consensus 549 ~L~~L~L~~~~i~~~~~~~l~ 569 (632)
+|+.|+|++|++....+..+.
T Consensus 346 ~L~~L~l~~N~~~~~~~~~~~ 366 (597)
T 3oja_B 346 TLKNLTLSHNDWDCNSLRALF 366 (597)
T ss_dssp CCSEEECCSSCEEHHHHHHHT
T ss_pred CCCEEEeeCCCCCChhHHHHH
Confidence 999999999999887666555
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.55 E-value=4.3e-16 Score=168.77 Aligned_cols=220 Identities=15% Similarity=0.047 Sum_probs=138.2
Q ss_pred cCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCC
Q 006749 360 GCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLS 439 (632)
Q Consensus 360 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 439 (632)
.+++|+.|+++.+..............+.+|+.+++..+........ ...+++|+.+++.++....... ...+.
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~----~~~l~~L~~l~l~~~~~~~~~~--~~~~~ 442 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN----FLGLEQLEHLDFQHSNLKQMSE--FSVFL 442 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC----CTTCTTCCEEECTTSEEESTTS--SCTTT
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc----ccccccccchhhhhcccccccc--ccccc
Confidence 35788999888753211111122233578899999877543221110 1124889999998765444332 12345
Q ss_pred CCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhh
Q 006749 440 PNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARL 519 (632)
Q Consensus 440 ~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 519 (632)
.+++++.++++.+.... .. ......+++|+.|+++++.... ......+..++ +|+.|+|++| .++......+.
T Consensus 443 ~l~~l~~l~ls~n~l~~-~~-~~~~~~~~~L~~L~Ls~N~~~~-~~~~~~~~~l~-~L~~L~Ls~N-~L~~l~~~~f~-- 515 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRV-AF-NGIFNGLSSLEVLKMAGNSFQE-NFLPDIFTELR-NLTFLDLSQC-QLEQLSPTAFN-- 515 (635)
T ss_dssp TCTTCCEEECTTSCCEE-CC-TTTTTTCTTCCEEECTTCEEGG-GEECSCCTTCT-TCCEEECTTS-CCCEECTTTTT--
T ss_pred ccccccccccccccccc-cc-ccccccchhhhhhhhhhccccc-ccCchhhhhcc-ccCEEECCCC-ccCCcChHHHc--
Confidence 78899999999875211 11 1123346899999998853222 11112223334 8999999996 66654444333
Q ss_pred cCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhcc-CCccEEeccCCCCcCcchHHHHH
Q 006749 520 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQ-LNLQVLSLSSCSEVSNKSMPALK 596 (632)
Q Consensus 520 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~-~~L~~L~l~~c~~l~~~~~~~~~ 596 (632)
.+++|+.|+|++ ++++......+ ..+++|+.|+|++|+++......+. .+ ++|+.|++++|+...+....++.
T Consensus 516 ~l~~L~~L~Ls~-N~l~~l~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~~~L~~L~L~~Np~~C~C~~~~~~ 589 (635)
T 4g8a_A 516 SLSSLQVLNMSH-NNFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNLTQNDFACTCEHQSFL 589 (635)
T ss_dssp TCTTCCEEECTT-SCCCBCCCGGG-TTCTTCCEEECTTSCCCBCCSSCTT--CCCTTCCEEECTTCCBCCSGGGHHHH
T ss_pred CCCCCCEEECCC-CcCCCCChhHH-hCCCCCCEEECCCCcCCCCCHHHHH--hhhCcCCEEEeeCCCCcccCCcHHHH
Confidence 489999999999 57765443333 4589999999999998775555554 44 58999999998855555554443
No 50
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.53 E-value=5.5e-13 Score=132.90 Aligned_cols=229 Identities=18% Similarity=0.106 Sum_probs=138.4
Q ss_pred CCC-CcceEeccCCCCCChhHHHHHh---hc-CCccceeecCCCCCCChH---HHHHHHHhc-CCCCeEecccCCCcchh
Q 006749 334 GLQ-KLVSLTIASGGGVTDVSLEAMG---KG-CLNLKQMCLRKCCFVSDN---GLVAFSKAA-GSLEILQLEECNRVSQS 404 (632)
Q Consensus 334 ~~~-~L~~L~l~~~~~~~~~~~~~l~---~~-~~~L~~L~L~~~~~l~~~---~l~~l~~~~-~~L~~L~l~~~~~~~~~ 404 (632)
.++ +|++|+++++. +++.....+. .. +++|++|++++|. +++. .+...+..+ ++|++|+++++. ++..
T Consensus 48 ~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~ 124 (362)
T 3goz_A 48 NTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSK 124 (362)
T ss_dssp TCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGS
T ss_pred hCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcH
Confidence 344 67777777664 4443332222 22 3777788777753 4332 333333344 677888877755 4444
Q ss_pred hHHHH---HhcccccccEEeccccCCCCccccc--cccCCCC-CCCCeEeccCCCCCC---HHHHHHHhhcC-CCCcEEE
Q 006749 405 GILGV---VSNSASKLKSLTLVKCMGIKDMATE--MPMLSPN-CSLRSLSIRNCPGFG---NASLAMLGKLC-PQLQHVD 474 (632)
Q Consensus 405 ~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~-~~L~~L~l~~~~~l~---~~~l~~~~~~~-~~L~~L~ 474 (632)
+...+ +....++|++|++++|... +.... ...+... ++|++|++++|. ++ ...+......+ ++|++|+
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~ 202 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLG-IKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLD 202 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCC-HHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEE
Confidence 43222 2221257888888775422 21111 0112233 489999998885 43 33444444455 4999999
Q ss_pred eccccCCCchhhHHHHhhc---cCCccEEecCCCCCCChHHHHHHHh--hcCCCCCeeeccCCC--CCChHHHHHHHh--
Q 006749 475 LSGLYGITDVGIFPLLESC---KAGLVKVNLSGCLNLTDEVVLALAR--LHSETLELLNLDGCR--KITDASLVAIGN-- 545 (632)
Q Consensus 475 l~~~~~l~~~~~~~l~~~~---~~~L~~L~l~~c~~l~~~~~~~l~~--~~~~~L~~L~l~~c~--~l~~~~~~~l~~-- 545 (632)
+++ +.+++.+...+.... +++|++|+++++ .+++.+...+.. ..+++|+.|++++|. .+++..+..+..
T Consensus 203 Ls~-N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~ 280 (362)
T 3goz_A 203 LSA-NLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF 280 (362)
T ss_dssp CTT-SCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS
T ss_pred CCC-CCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh
Confidence 998 678776665554432 348999999995 777755544332 156899999999953 377777776653
Q ss_pred -cCCCcCeEeccCCCCChhHHHhhh
Q 006749 546 -NCMFLSYLDVSKCAITDMGISALS 569 (632)
Q Consensus 546 -~~~~L~~L~L~~~~i~~~~~~~l~ 569 (632)
.+++|+.|++++|.+.+.....+.
T Consensus 281 ~~l~~L~~LdL~~N~l~~~~~~~~~ 305 (362)
T 3goz_A 281 PNIQKIILVDKNGKEIHPSHSIPIS 305 (362)
T ss_dssp TTCCEEEEECTTSCBCCGGGCHHHH
T ss_pred ccCCceEEEecCCCcCCCcchHHHH
Confidence 467788999999998886444333
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.52 E-value=1.6e-14 Score=148.11 Aligned_cols=344 Identities=14% Similarity=0.150 Sum_probs=155.8
Q ss_pred CCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhh
Q 006749 149 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 228 (632)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 228 (632)
.++++|+++++. ...++. ..++|++|+++++ .+.. +. ...++|++|+++++ .++. +...
T Consensus 71 ~~l~~L~l~~~~-l~~lp~--------~~~~L~~L~l~~n-~l~~--lp---~~~~~L~~L~l~~n-~l~~-----l~~~ 129 (454)
T 1jl5_A 71 RQAHELELNNLG-LSSLPE--------LPPHLESLVASCN-SLTE--LP---ELPQSLKSLLVDNN-NLKA-----LSDL 129 (454)
T ss_dssp HTCSEEECTTSC-CSCCCS--------CCTTCSEEECCSS-CCSS--CC---CCCTTCCEEECCSS-CCSC-----CCSC
T ss_pred cCCCEEEecCCc-cccCCC--------CcCCCCEEEccCC-cCCc--cc---cccCCCcEEECCCC-ccCc-----ccCC
Confidence 366777777662 122221 1357777777664 3332 11 12367777777763 3432 1111
Q ss_pred CCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCc
Q 006749 229 CPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGK 308 (632)
Q Consensus 229 l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~ 308 (632)
.++|++|+++++. ++. +..+.. +++|++|+++++. +.... .. ..+|+.|+++++.+...
T Consensus 130 ~~~L~~L~L~~n~-l~~--lp~~~~-l~~L~~L~l~~N~-l~~lp-----~~-~~~L~~L~L~~n~l~~l---------- 188 (454)
T 1jl5_A 130 PPLLEYLGVSNNQ-LEK--LPELQN-SSFLKIIDVDNNS-LKKLP-----DL-PPSLEFIAAGNNQLEEL---------- 188 (454)
T ss_dssp CTTCCEEECCSSC-CSS--CCCCTT-CTTCCEEECCSSC-CSCCC-----CC-CTTCCEEECCSSCCSSC----------
T ss_pred CCCCCEEECcCCC-CCC--CcccCC-CCCCCEEECCCCc-CcccC-----CC-cccccEEECcCCcCCcC----------
Confidence 2577777777643 332 112333 6677777776653 21100 00 01244444444433321
Q ss_pred ccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcC
Q 006749 309 ALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAG 388 (632)
Q Consensus 309 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~ 388 (632)
.....+++|++|+++++. +... ....++|++|+++++. +.. +.. +..++
T Consensus 189 ---------------------~~~~~l~~L~~L~l~~N~-l~~l-----~~~~~~L~~L~l~~n~-l~~--lp~-~~~l~ 237 (454)
T 1jl5_A 189 ---------------------PELQNLPFLTAIYADNNS-LKKL-----PDLPLSLESIVAGNNI-LEE--LPE-LQNLP 237 (454)
T ss_dssp ---------------------CCCTTCTTCCEEECCSSC-CSSC-----CCCCTTCCEEECCSSC-CSS--CCC-CTTCT
T ss_pred ---------------------ccccCCCCCCEEECCCCc-CCcC-----CCCcCcccEEECcCCc-CCc--ccc-cCCCC
Confidence 112445666777766654 2221 1122467777776653 221 111 23566
Q ss_pred CCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCC
Q 006749 389 SLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCP 468 (632)
Q Consensus 389 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~ 468 (632)
+|+.|+++++. ++... ...++|+.|++++|. +..+. ..+++|++|++++|. ++. +....+
T Consensus 238 ~L~~L~l~~N~-l~~l~------~~~~~L~~L~l~~N~-l~~l~------~~~~~L~~L~ls~N~-l~~-----l~~~~~ 297 (454)
T 1jl5_A 238 FLTTIYADNNL-LKTLP------DLPPSLEALNVRDNY-LTDLP------ELPQSLTFLDVSENI-FSG-----LSELPP 297 (454)
T ss_dssp TCCEEECCSSC-CSSCC------SCCTTCCEEECCSSC-CSCCC------CCCTTCCEEECCSSC-CSE-----ESCCCT
T ss_pred CCCEEECCCCc-CCccc------ccccccCEEECCCCc-ccccC------cccCcCCEEECcCCc-cCc-----ccCcCC
Confidence 77777776643 22211 112677777777754 22221 124677788887764 221 111225
Q ss_pred CCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCC
Q 006749 469 QLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCM 548 (632)
Q Consensus 469 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 548 (632)
+|+.|++++ +.++. +. ..+++|++|+++++ .++.. .. .+++|+.|++++| .++.... .++
T Consensus 298 ~L~~L~l~~-N~l~~--i~----~~~~~L~~L~Ls~N-~l~~l-----p~-~~~~L~~L~L~~N-~l~~lp~-----~l~ 357 (454)
T 1jl5_A 298 NLYYLNASS-NEIRS--LC----DLPPSLEELNVSNN-KLIEL-----PA-LPPRLERLIASFN-HLAEVPE-----LPQ 357 (454)
T ss_dssp TCCEEECCS-SCCSE--EC----CCCTTCCEEECCSS-CCSCC-----CC-CCTTCCEEECCSS-CCSCCCC-----CCT
T ss_pred cCCEEECcC-CcCCc--cc----CCcCcCCEEECCCC-ccccc-----cc-cCCcCCEEECCCC-ccccccc-----hhh
Confidence 788888876 34432 11 12237888888774 45431 11 3578888888873 5553221 467
Q ss_pred CcCeEeccCCCCCh--hHHHhhhh-----------hccCCccEEeccCCCCcCcchHHHHHHhCCccccccccccC
Q 006749 549 FLSYLDVSKCAITD--MGISALSH-----------AEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCN 611 (632)
Q Consensus 549 ~L~~L~L~~~~i~~--~~~~~l~~-----------~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 611 (632)
+|+.|++++|+++. .....+.. ...++|+.|++++|+ ++. + ...+++++.|.+.+|.
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~--~---~~iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LRE--F---PDIPESVEDLRMNSER 427 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------------------
T ss_pred hccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCc--c---ccchhhHhheeCcCcc
Confidence 88888888887665 21122210 012678888888855 432 1 2245567788877753
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.51 E-value=3.8e-14 Score=145.22 Aligned_cols=374 Identities=14% Similarity=0.085 Sum_probs=200.4
Q ss_pred CCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCc---------hhH--HHHH-HhCCCCCEeecCCCCC
Q 006749 149 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGD---------EGL--LEIA-KECHLLEKLELCHCPS 216 (632)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~---------~~~--~~~~-~~~~~L~~L~L~~~~~ 216 (632)
..+++|.++++. +. .....+ ..+++|++|+++++. +.. ..+ ..+. ....++++|+++++ .
T Consensus 11 ~~L~~L~l~~n~----l~-~iP~~i-~~L~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~ 82 (454)
T 1jl5_A 11 TFLQEPLRHSSN----LT-EMPVEA-ENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-G 82 (454)
T ss_dssp -----------------------------CCHHHHHHHHHH-HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-C
T ss_pred ccchhhhcccCc----hh-hCChhH-hcccchhhhhccCCc-ccccCCcccccchhcchhhhhhhhccCCCEEEecCC-c
Confidence 688888888763 31 112223 467889999887642 110 000 0010 01246799999985 4
Q ss_pred CCHHHHHHHHhhCCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccc
Q 006749 217 ISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNIT 296 (632)
Q Consensus 217 ~~~~~l~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~ 296 (632)
++. ++ ...++|++|+++++. ++. + ....++|++|+++++. +...+ ..+.+|+.|+++++.+.
T Consensus 83 l~~--lp---~~~~~L~~L~l~~n~-l~~--l---p~~~~~L~~L~l~~n~-l~~l~------~~~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 83 LSS--LP---ELPPHLESLVASCNS-LTE--L---PELPQSLKSLLVDNNN-LKALS------DLPPLLEYLGVSNNQLE 144 (454)
T ss_dssp CSC--CC---SCCTTCSEEECCSSC-CSS--C---CCCCTTCCEEECCSSC-CSCCC------SCCTTCCEEECCSSCCS
T ss_pred ccc--CC---CCcCCCCEEEccCCc-CCc--c---ccccCCCcEEECCCCc-cCccc------CCCCCCCEEECcCCCCC
Confidence 443 11 124789999998753 332 1 1225789999998764 32211 11134889999888877
Q ss_pred hhHHHHHhhcCcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCC
Q 006749 297 DFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVS 376 (632)
Q Consensus 297 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~ 376 (632)
... . ...+++|+.|+++++.. .... ...++|++|+++++. +.... . ...+++|+.|+++++. +.
T Consensus 145 ~lp--~-~~~l~~L~~L~l~~N~l-~~lp-------~~~~~L~~L~L~~n~-l~~l~--~-~~~l~~L~~L~l~~N~-l~ 208 (454)
T 1jl5_A 145 KLP--E-LQNSSFLKIIDVDNNSL-KKLP-------DLPPSLEFIAAGNNQ-LEELP--E-LQNLPFLTAIYADNNS-LK 208 (454)
T ss_dssp SCC--C-CTTCTTCCEEECCSSCC-SCCC-------CCCTTCCEEECCSSC-CSSCC--C-CTTCTTCCEEECCSSC-CS
T ss_pred CCc--c-cCCCCCCCEEECCCCcC-cccC-------CCcccccEEECcCCc-CCcCc--c-ccCCCCCCEEECCCCc-CC
Confidence 633 2 34567888888888732 2110 123588999998875 43322 2 3457889999998863 32
Q ss_pred hHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCC
Q 006749 377 DNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFG 456 (632)
Q Consensus 377 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 456 (632)
. +. ...++|+.|+++++. ++... . ...+++|++|+++++.. ..+. ...++|++|++++|.. .
T Consensus 209 ~--l~---~~~~~L~~L~l~~n~-l~~lp--~--~~~l~~L~~L~l~~N~l-~~l~------~~~~~L~~L~l~~N~l-~ 270 (454)
T 1jl5_A 209 K--LP---DLPLSLESIVAGNNI-LEELP--E--LQNLPFLTTIYADNNLL-KTLP------DLPPSLEALNVRDNYL-T 270 (454)
T ss_dssp S--CC---CCCTTCCEEECCSSC-CSSCC--C--CTTCTTCCEEECCSSCC-SSCC------SCCTTCCEEECCSSCC-S
T ss_pred c--CC---CCcCcccEEECcCCc-CCccc--c--cCCCCCCCEEECCCCcC-Cccc------ccccccCEEECCCCcc-c
Confidence 2 11 123588999988764 33222 1 12348899999988542 2221 1347899999988753 2
Q ss_pred HHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCC
Q 006749 457 NASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKIT 536 (632)
Q Consensus 457 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 536 (632)
. +....++|++|++++ +.++.-. ..+++|+.|+++++ .++.. .. ..++|+.|++++ +.++
T Consensus 271 ~-----l~~~~~~L~~L~ls~-N~l~~l~------~~~~~L~~L~l~~N-~l~~i-----~~-~~~~L~~L~Ls~-N~l~ 330 (454)
T 1jl5_A 271 D-----LPELPQSLTFLDVSE-NIFSGLS------ELPPNLYYLNASSN-EIRSL-----CD-LPPSLEELNVSN-NKLI 330 (454)
T ss_dssp C-----CCCCCTTCCEEECCS-SCCSEES------CCCTTCCEEECCSS-CCSEE-----CC-CCTTCCEEECCS-SCCS
T ss_pred c-----cCcccCcCCEEECcC-CccCccc------CcCCcCCEEECcCC-cCCcc-----cC-CcCcCCEEECCC-Cccc
Confidence 2 122347899999988 4444311 11248999999885 55431 11 125899999998 5665
Q ss_pred hHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCc--chHHHH------------HHhCCcc
Q 006749 537 DASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSN--KSMPAL------------KKLGKTL 602 (632)
Q Consensus 537 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~--~~~~~~------------~~~~~~L 602 (632)
. +...+++|+.|++++|.++.... .+++|++|++++|. ++. .....+ ...+++|
T Consensus 331 ~-----lp~~~~~L~~L~L~~N~l~~lp~------~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L 398 (454)
T 1jl5_A 331 E-----LPALPPRLERLIASFNHLAEVPE------LPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPELPQNL 398 (454)
T ss_dssp C-----CCCCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC------------
T ss_pred c-----ccccCCcCCEEECCCCccccccc------hhhhccEEECCCCC-CCcCCCChHHHHhhhhcccccccccccCcC
Confidence 4 22347899999999998874221 35799999999965 544 111111 1223789
Q ss_pred ccccccccCCCCH
Q 006749 603 VGLNLQNCNSINS 615 (632)
Q Consensus 603 ~~L~l~~c~~l~~ 615 (632)
+.|++++ +.++.
T Consensus 399 ~~L~ls~-N~l~~ 410 (454)
T 1jl5_A 399 KQLHVET-NPLRE 410 (454)
T ss_dssp -------------
T ss_pred CEEECCC-CcCCc
Confidence 9999999 56766
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.46 E-value=2e-14 Score=140.53 Aligned_cols=173 Identities=14% Similarity=0.088 Sum_probs=92.7
Q ss_pred ccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhcc
Q 006749 415 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 494 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 494 (632)
++|++|+++++. +.... ...+++|++|++++|. ++......+ ..+++|++|++++ +.++......+...++
T Consensus 99 ~~L~~L~l~~n~-l~~~~-----~~~~~~L~~L~l~~N~-l~~~~~~~~-~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 99 PSIETLHAANNN-ISRVS-----CSRGQGKKNIYLANNK-ITMLRDLDE-GCRSRVQYLDLKL-NEIDTVNFAELAASSD 169 (317)
T ss_dssp TTCCEEECCSSC-CSEEE-----ECCCSSCEEEECCSSC-CCSGGGBCT-GGGSSEEEEECTT-SCCCEEEGGGGGGGTT
T ss_pred CCcCEEECCCCc-cCCcC-----ccccCCCCEEECCCCC-CCCccchhh-hccCCCCEEECCC-CCCCcccHHHHhhccC
Confidence 556666666543 22221 1235566666666664 222111111 2246677777766 4554433333333333
Q ss_pred CCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccC
Q 006749 495 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQL 574 (632)
Q Consensus 495 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 574 (632)
+|++|+++++ .++... ... .+++|+.|++++ +.++..... ...+++|+.|++++|.++... ..+. .++
T Consensus 170 -~L~~L~L~~N-~l~~~~--~~~--~l~~L~~L~Ls~-N~l~~l~~~--~~~l~~L~~L~L~~N~l~~l~-~~~~--~l~ 237 (317)
T 3o53_A 170 -TLEHLNLQYN-FIYDVK--GQV--VFAKLKTLDLSS-NKLAFMGPE--FQSAAGVTWISLRNNKLVLIE-KALR--FSQ 237 (317)
T ss_dssp -TCCEEECTTS-CCCEEE--CCC--CCTTCCEEECCS-SCCCEECGG--GGGGTTCSEEECTTSCCCEEC-TTCC--CCT
T ss_pred -cCCEEECCCC-cCcccc--ccc--ccccCCEEECCC-CcCCcchhh--hcccCcccEEECcCCcccchh-hHhh--cCC
Confidence 6777777764 343321 111 257777777777 466543222 234677888888877766421 1222 567
Q ss_pred CccEEeccCCCCcCcchHHHHHHhCCccccccccc
Q 006749 575 NLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQN 609 (632)
Q Consensus 575 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 609 (632)
+|+.|++++|+ ++...++.+...+++|+.|++++
T Consensus 238 ~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 238 NLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp TCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCEEEccCCC-ccCcCHHHHHhccccceEEECCC
Confidence 77888887765 55344555555566677777664
No 54
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.43 E-value=5.2e-14 Score=120.60 Aligned_cols=105 Identities=19% Similarity=0.288 Sum_probs=67.8
Q ss_pred CCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCC-CChhHHHhhhhh--ccCCccEEeccCCCCcCcchHHHHHHhC
Q 006749 523 TLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCA-ITDMGISALSHA--EQLNLQVLSLSSCSEVSNKSMPALKKLG 599 (632)
Q Consensus 523 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 599 (632)
+|+.|++++|. +++.++..+. .|++|++|+|++|. |+|.++..+... .+++|++|+|++|++|||.++..+.. +
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~ 138 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-F 138 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-C
T ss_pred eEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-C
Confidence 46666666653 6666665553 36666666666663 666666666611 13467777777777777777766543 5
Q ss_pred CccccccccccCCCCHHH--HHHHHhccccccc
Q 006749 600 KTLVGLNLQNCNSINSST--VARLVESLWRCDI 630 (632)
Q Consensus 600 ~~L~~L~l~~c~~l~~~~--~~~l~~~l~~~~~ 630 (632)
++|+.|+|++|+++++.+ +..+.+++|.|+|
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 667777777777777654 5667777777765
No 55
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.41 E-value=3.6e-12 Score=126.48 Aligned_cols=179 Identities=20% Similarity=0.227 Sum_probs=119.7
Q ss_pred cccccEEeccccCCCCcccccc--ccC-CCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHH
Q 006749 414 ASKLKSLTLVKCMGIKDMATEM--PML-SPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLL 490 (632)
Q Consensus 414 ~~~L~~L~l~~~~~~~~~~~~~--~~~-~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 490 (632)
.++|++|++++|. ++...... ..+ ...++|++|++++|. +++..+..++..+++|++|++++ +.+++.+...+.
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~-n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQL-NSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCS-SCCCHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCC-CCCCHHHHHHHH
Confidence 3788899888865 33221111 111 234688888888874 67777777766667888888887 577777666654
Q ss_pred hhc---cCCccEEecCCCCCCChHHHHHHHh--hcCCCCCeeeccCCCCCChHHHHHHH---hcCCCcCeEeccCCCCCh
Q 006749 491 ESC---KAGLVKVNLSGCLNLTDEVVLALAR--LHSETLELLNLDGCRKITDASLVAIG---NNCMFLSYLDVSKCAITD 562 (632)
Q Consensus 491 ~~~---~~~L~~L~l~~c~~l~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~l~---~~~~~L~~L~L~~~~i~~ 562 (632)
... .++|++|+|++| .+++.+...++. ...++|++|++++ +.+++.+...+. ..+++|++|+|++|.+++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLH-TGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTT-SSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCC-CCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 432 137888888885 677666555532 1467888888887 478777765554 346778888888888888
Q ss_pred hHHHhhhh--hccCCccEEeccCCCCcCcchHHHHHHh
Q 006749 563 MGISALSH--AEQLNLQVLSLSSCSEVSNKSMPALKKL 598 (632)
Q Consensus 563 ~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 598 (632)
.+...+.. ..+++|++|+|++|. |++.+...+...
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~~ 262 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDL 262 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHHH
Confidence 77666652 146788888888865 777777766554
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.40 E-value=3.5e-13 Score=132.70 Aligned_cols=180 Identities=18% Similarity=0.163 Sum_probs=98.4
Q ss_pred ccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhcc
Q 006749 415 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 494 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 494 (632)
++|+.|+++++.. .........+..+++|++|++++|.. +... ....++|++|++++ +.++...... +..++
T Consensus 145 ~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~----~~~~~~L~~L~l~~-n~l~~~~~~~-~~~l~ 216 (330)
T 1xku_A 145 NQMIVVELGTNPL-KSSGIENGAFQGMKKLSYIRIADTNI-TTIP----QGLPPSLTELHLDG-NKITKVDAAS-LKGLN 216 (330)
T ss_dssp TTCCEEECCSSCC-CGGGBCTTGGGGCTTCCEEECCSSCC-CSCC----SSCCTTCSEEECTT-SCCCEECTGG-GTTCT
T ss_pred ccccEEECCCCcC-CccCcChhhccCCCCcCEEECCCCcc-ccCC----ccccccCCEEECCC-CcCCccCHHH-hcCCC
Confidence 5666666665432 22222223344566777777766642 2100 01126777777776 3444322111 22333
Q ss_pred CCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhh----
Q 006749 495 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSH---- 570 (632)
Q Consensus 495 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~---- 570 (632)
+|++|+++++ .++......+. .+++|+.|++++| .++... .....+++|++|++++|+++..+...+..
T Consensus 217 -~L~~L~Ls~n-~l~~~~~~~~~--~l~~L~~L~L~~N-~l~~lp--~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 217 -NLAKLGLSFN-SISAVDNGSLA--NTPHLRELHLNNN-KLVKVP--GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289 (330)
T ss_dssp -TCCEEECCSS-CCCEECTTTGG--GSTTCCEEECCSS-CCSSCC--TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred -CCCEEECCCC-cCceeChhhcc--CCCCCCEEECCCC-cCccCC--hhhccCCCcCEEECCCCcCCccChhhcCCcccc
Confidence 7888888774 45443332233 4788999999884 665321 11245888999999999877655444431
Q ss_pred hccCCccEEeccCCCCcCcchH-HHHHHhCCcccccccccc
Q 006749 571 AEQLNLQVLSLSSCSEVSNKSM-PALKKLGKTLVGLNLQNC 610 (632)
Q Consensus 571 ~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~L~~L~l~~c 610 (632)
...+.|+.|++.+++ +....+ +....-+++++.++++++
T Consensus 290 ~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 290 TKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence 134678899999876 432222 122333567888888873
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.39 E-value=2e-13 Score=135.82 Aligned_cols=256 Identities=17% Similarity=0.138 Sum_probs=112.4
Q ss_pred cccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhc
Q 006749 308 KALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAA 387 (632)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~ 387 (632)
++++.|+++++. +..... ..+..+++|++|+++++. +....... ...+++|++|+++++ .++... ...+..+
T Consensus 52 ~~L~~L~l~~n~-i~~~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l 123 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYISN---SDLQRCVNLQALVLTSNG-INTIEEDS-FSSLGSLEHLDLSYN-YLSNLS-SSWFKPL 123 (353)
T ss_dssp TTCCEEECTTSC-CCEECT---TTTTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSS-CCSSCC-HHHHTTC
T ss_pred ccCcEEECCCCc-CcccCH---HHhccCCCCCEEECCCCc-cCccCHhh-cCCCCCCCEEECCCC-cCCcCC-HhHhCCC
Confidence 567777777663 222111 112445677777777664 43322111 234567777777664 232211 1223346
Q ss_pred CCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcC
Q 006749 388 GSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLC 467 (632)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~ 467 (632)
++|++|+++++. ++...... ....+++|++|+++++..+..+. ...+..+++|++|++++|. +.......+ ..+
T Consensus 124 ~~L~~L~L~~n~-l~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~l-~~l 197 (353)
T 2z80_A 124 SSLTFLNLLGNP-YKTLGETS-LFSHLTKLQILRVGNMDTFTKIQ--RKDFAGLTFLEELEIDASD-LQSYEPKSL-KSI 197 (353)
T ss_dssp TTCSEEECTTCC-CSSSCSSC-SCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETT-CCEECTTTT-TTC
T ss_pred ccCCEEECCCCC-CcccCchh-hhccCCCCcEEECCCCccccccC--HHHccCCCCCCEEECCCCC-cCccCHHHH-hcc
Confidence 667777766543 22111000 01123566666666654333321 1123445666666666553 221111111 223
Q ss_pred CCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHH--HhhcCCCCCeeeccCCCCCChHHHHHHH-
Q 006749 468 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLAL--ARLHSETLELLNLDGCRKITDASLVAIG- 544 (632)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l--~~~~~~~L~~L~l~~c~~l~~~~~~~l~- 544 (632)
++|++|++++ +.++... ......++ +|+.|+++++ .++......+ .. ..+.++.+++.+ ..+++..+..+.
T Consensus 198 ~~L~~L~l~~-n~l~~~~-~~~~~~~~-~L~~L~L~~n-~l~~~~~~~l~~~~-~~~~l~~l~L~~-~~l~~~~l~~l~~ 271 (353)
T 2z80_A 198 QNVSHLILHM-KQHILLL-EIFVDVTS-SVECLELRDT-DLDTFHFSELSTGE-TNSLIKKFTFRN-VKITDESLFQVMK 271 (353)
T ss_dssp SEEEEEEEEC-SCSTTHH-HHHHHHTT-TEEEEEEESC-BCTTCCCC-------CCCCCCEEEEES-CBCCHHHHHHHHH
T ss_pred ccCCeecCCC-Cccccch-hhhhhhcc-cccEEECCCC-cccccccccccccc-ccchhhcccccc-ccccCcchhhhHH
Confidence 5566666655 2232111 11112222 5666666553 3322111100 01 234555555555 345554433322
Q ss_pred --hcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCC
Q 006749 545 --NNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 585 (632)
Q Consensus 545 --~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 585 (632)
..+++|++|++++|+++......+. .+++|++|++++|+
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~--~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFD--RLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSC
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHh--cCCCCCEEEeeCCC
Confidence 3455666666666655432211122 45556666666554
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.39 E-value=4.7e-15 Score=144.49 Aligned_cols=252 Identities=15% Similarity=0.086 Sum_probs=143.7
Q ss_pred CCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHH-HHHHHHhcCCCCeEecccCCCcchhhHHHHHhccc
Q 006749 336 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNG-LVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSA 414 (632)
Q Consensus 336 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~-l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 414 (632)
++|++|+++++. +..... .....+++|++|+++++ .++..+ .......+++|+.|+++++. +.... .. ...+
T Consensus 28 ~~l~~L~L~~n~-l~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~--~~-~~~l 100 (306)
T 2z66_A 28 SSATRLELESNK-LQSLPH-GVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMS--SN-FLGL 100 (306)
T ss_dssp TTCCEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEE--EE-EETC
T ss_pred CCCCEEECCCCc-cCccCH-hHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCc-cccCh--hh-cCCC
Confidence 689999999875 443222 22345789999999886 444221 01112357899999998864 22211 00 1224
Q ss_pred ccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhcc
Q 006749 415 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 494 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 494 (632)
++|++|+++++...... . ...+..+++|++|++++|.. .... ......+++|++|++++ +.+++..+...+..++
T Consensus 101 ~~L~~L~l~~n~l~~~~-~-~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMS-E-FSVFLSLRNLIYLDISHTHT-RVAF-NGIFNGLSSLEVLKMAG-NSFQENFLPDIFTELR 175 (306)
T ss_dssp TTCCEEECTTSEEESST-T-TTTTTTCTTCCEEECTTSCC-EECS-TTTTTTCTTCCEEECTT-CEEGGGEECSCCTTCT
T ss_pred CCCCEEECCCCcccccc-c-chhhhhccCCCEEECCCCcC-Cccc-hhhcccCcCCCEEECCC-CccccccchhHHhhCc
Confidence 78889988885422211 1 12345678888888888752 2111 11123457888888887 3333322222233333
Q ss_pred CCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhcc-
Q 006749 495 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQ- 573 (632)
Q Consensus 495 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~- 573 (632)
+|++|+++++ .++......+. .+++|+.|++++ +.++......+ ..+++|+.|++++|.++......+. .+
T Consensus 176 -~L~~L~Ls~n-~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~~~ 247 (306)
T 2z66_A 176 -NLTFLDLSQC-QLEQLSPTAFN--SLSSLQVLNMSH-NNFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQ--HFP 247 (306)
T ss_dssp -TCCEEECTTS-CCCEECTTTTT--TCTTCCEEECTT-SCCSBCCSGGG-TTCTTCCEEECTTSCCCBCSSSSCC--CCC
T ss_pred -CCCEEECCCC-CcCCcCHHHhc--CCCCCCEEECCC-CccCccChhhc-cCcccCCEeECCCCCCcccCHHHHH--hhh
Confidence 7888888875 55543333333 367888888887 45554332222 3477888888888877765544444 45
Q ss_pred CCccEEeccCCCCcCcchHHHHHHhCCccccccc
Q 006749 574 LNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNL 607 (632)
Q Consensus 574 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l 607 (632)
++|++|++++|+--.+....++.......+.+.+
T Consensus 248 ~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~ 281 (306)
T 2z66_A 248 SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 281 (306)
T ss_dssp TTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBS
T ss_pred ccCCEEEccCCCeecccChHHHHHHHHhhhhhhc
Confidence 3788888888663333333444443333444433
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.38 E-value=9.2e-14 Score=136.87 Aligned_cols=250 Identities=16% Similarity=0.123 Sum_probs=140.4
Q ss_pred CcccceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHh
Q 006749 307 GKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKA 386 (632)
Q Consensus 307 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~ 386 (632)
+++|+.|+++++. +..... ..+..+++|++|+++++. +...+. ...++|++|+++++ .+.... ...+..
T Consensus 75 l~~L~~L~L~~n~-l~~~~~---~~~~~l~~L~~L~Ls~n~-l~~l~~----~~~~~L~~L~l~~n-~l~~~~-~~~~~~ 143 (330)
T 1xku_A 75 LKNLHTLILINNK-ISKISP---GAFAPLVKLERLYLSKNQ-LKELPE----KMPKTLQELRVHEN-EITKVR-KSVFNG 143 (330)
T ss_dssp CTTCCEEECCSSC-CCCBCT---TTTTTCTTCCEEECCSSC-CSBCCS----SCCTTCCEEECCSS-CCCBBC-HHHHTT
T ss_pred CCCCCEEECCCCc-CCeeCH---HHhcCCCCCCEEECCCCc-CCccCh----hhcccccEEECCCC-cccccC-HhHhcC
Confidence 3566666666552 111110 112345777888887764 332111 11267888888775 333322 223346
Q ss_pred cCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhc
Q 006749 387 AGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKL 466 (632)
Q Consensus 387 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~ 466 (632)
+++|+.|+++++. +...+........+++|++|+++++. +..+.. ...++|++|++++|. ++......+ ..
T Consensus 144 l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~-----~~~~~L~~L~l~~n~-l~~~~~~~~-~~ 214 (330)
T 1xku_A 144 LNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ-----GLPPSLTELHLDGNK-ITKVDAASL-KG 214 (330)
T ss_dssp CTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCS-----SCCTTCSEEECTTSC-CCEECTGGG-TT
T ss_pred CccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCc-cccCCc-----cccccCCEEECCCCc-CCccCHHHh-cC
Confidence 7888888887754 32211111112234788888888754 222211 123789999998875 332222222 34
Q ss_pred CCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHh-
Q 006749 467 CPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGN- 545 (632)
Q Consensus 467 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~- 545 (632)
+++|++|++++ +.++..... .+..++ +|++|+++++ .++... ..+. .+++|+.|++++ +.++..+...+..
T Consensus 215 l~~L~~L~Ls~-n~l~~~~~~-~~~~l~-~L~~L~L~~N-~l~~lp-~~l~--~l~~L~~L~l~~-N~i~~~~~~~f~~~ 286 (330)
T 1xku_A 215 LNNLAKLGLSF-NSISAVDNG-SLANTP-HLRELHLNNN-KLVKVP-GGLA--DHKYIQVVYLHN-NNISAIGSNDFCPP 286 (330)
T ss_dssp CTTCCEEECCS-SCCCEECTT-TGGGST-TCCEEECCSS-CCSSCC-TTTT--TCSSCCEEECCS-SCCCCCCTTSSSCS
T ss_pred CCCCCEEECCC-CcCceeChh-hccCCC-CCCEEECCCC-cCccCC-hhhc--cCCCcCEEECCC-CcCCccChhhcCCc
Confidence 58899999988 445432211 122334 8999999986 454221 1122 478999999998 5776644333321
Q ss_pred ----cCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCC
Q 006749 546 ----NCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSC 584 (632)
Q Consensus 546 ----~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c 584 (632)
..+.|+.|++++|.+....+..-....++.++.+++++|
T Consensus 287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 247899999999987653332222236778999999875
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.38 E-value=3.5e-14 Score=138.28 Aligned_cols=84 Identities=23% Similarity=0.222 Sum_probs=34.4
Q ss_pred CCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCC
Q 006749 521 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGK 600 (632)
Q Consensus 521 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 600 (632)
+++|+.|++++ +.++......+ ..+++|++|++++|.++......+. .+++|++|++++|. ++......+...++
T Consensus 174 l~~L~~L~Ls~-n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~~~~~ 248 (306)
T 2z66_A 174 LRNLTFLDLSQ-CQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYK--CLNSLQVLDYSLNH-IMTSKKQELQHFPS 248 (306)
T ss_dssp CTTCCEEECTT-SCCCEECTTTT-TTCTTCCEEECTTSCCSBCCSGGGT--TCTTCCEEECTTSC-CCBCSSSSCCCCCT
T ss_pred CcCCCEEECCC-CCcCCcCHHHh-cCCCCCCEEECCCCccCccChhhcc--CcccCCEeECCCCC-CcccCHHHHHhhhc
Confidence 44555555554 23433221112 1244555555555544432222222 34455555555533 33322222222223
Q ss_pred ccccccccc
Q 006749 601 TLVGLNLQN 609 (632)
Q Consensus 601 ~L~~L~l~~ 609 (632)
+|++|++++
T Consensus 249 ~L~~L~L~~ 257 (306)
T 2z66_A 249 SLAFLNLTQ 257 (306)
T ss_dssp TCCEEECTT
T ss_pred cCCEEEccC
Confidence 455555555
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.37 E-value=1.1e-13 Score=136.35 Aligned_cols=251 Identities=16% Similarity=0.161 Sum_probs=132.8
Q ss_pred CCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcc
Q 006749 334 GLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNS 413 (632)
Q Consensus 334 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 413 (632)
.+++|++|+++++. +....... ...+++|++|+++++. +... .. ...++|++|+++++. ++... ......
T Consensus 76 ~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~l--~~--~~~~~L~~L~l~~n~-i~~~~--~~~~~~ 145 (332)
T 2ft3_A 76 GLQHLYALVLVNNK-ISKIHEKA-FSPLRKLQKLYISKNH-LVEI--PP--NLPSSLVELRIHDNR-IRKVP--KGVFSG 145 (332)
T ss_dssp TCTTCCEEECCSSC-CCEECGGG-STTCTTCCEEECCSSC-CCSC--CS--SCCTTCCEEECCSSC-CCCCC--SGGGSS
T ss_pred CCCCCcEEECCCCc-cCccCHhH-hhCcCCCCEEECCCCc-CCcc--Cc--cccccCCEEECCCCc-cCccC--HhHhCC
Confidence 34566666666553 33221111 2344666666666542 2210 00 012566666666543 22111 001122
Q ss_pred cccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhc
Q 006749 414 ASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESC 493 (632)
Q Consensus 414 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 493 (632)
+++|++|+++++.. +........+..+ +|+.|++++|. ++... ....++|++|++++ +.++...... +..+
T Consensus 146 l~~L~~L~l~~n~l-~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~----~~~~~~L~~L~l~~-n~i~~~~~~~-l~~l 216 (332)
T 2ft3_A 146 LRNMNCIEMGGNPL-ENSGFEPGAFDGL-KLNYLRISEAK-LTGIP----KDLPETLNELHLDH-NKIQAIELED-LLRY 216 (332)
T ss_dssp CSSCCEEECCSCCC-BGGGSCTTSSCSC-CCSCCBCCSSB-CSSCC----SSSCSSCSCCBCCS-SCCCCCCTTS-STTC
T ss_pred CccCCEEECCCCcc-ccCCCCcccccCC-ccCEEECcCCC-CCccC----ccccCCCCEEECCC-CcCCccCHHH-hcCC
Confidence 36777777776432 2222222233344 77777777764 22110 01125788888877 3443222111 1223
Q ss_pred cCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhh--
Q 006749 494 KAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHA-- 571 (632)
Q Consensus 494 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~-- 571 (632)
+ +|++|+++++ .++......+. .+++|+.|++++ +.++.... . ...+++|+.|++++|+++..+...+...
T Consensus 217 ~-~L~~L~L~~N-~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~lp~-~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 217 S-KLYRLGLGHN-QIRMIENGSLS--FLPTLRELHLDN-NKLSRVPA-G-LPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289 (332)
T ss_dssp T-TCSCCBCCSS-CCCCCCTTGGG--GCTTCCEEECCS-SCCCBCCT-T-GGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred C-CCCEEECCCC-cCCcCChhHhh--CCCCCCEEECCC-CcCeecCh-h-hhcCccCCEEECCCCCCCccChhHcccccc
Confidence 3 7888888874 55443332233 478999999988 46663221 1 3458999999999998887655554411
Q ss_pred --ccCCccEEeccCCCCcCcc-hHHHHHHhCCccccccccccC
Q 006749 572 --EQLNLQVLSLSSCSEVSNK-SMPALKKLGKTLVGLNLQNCN 611 (632)
Q Consensus 572 --~~~~L~~L~l~~c~~l~~~-~~~~~~~~~~~L~~L~l~~c~ 611 (632)
..+.|+.|++.+++ ++.. ..+.....+++|+.|+++++.
T Consensus 290 ~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence 25678999999977 4321 222333446779999998853
No 62
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.34 E-value=2e-14 Score=139.99 Aligned_cols=255 Identities=13% Similarity=0.030 Sum_probs=148.5
Q ss_pred CCcceEeccCCCCCCh-hHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhccc
Q 006749 336 QKLVSLTIASGGGVTD-VSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSA 414 (632)
Q Consensus 336 ~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 414 (632)
.++++|+++++. +.. ..+......+++|++|+++++..+.... ...+..+++|++|+++++. ++.... .. ...+
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~-l~~~~p-~~-~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHTN-VSGAIP-DF-LSQI 124 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEEC-CEEECC-GG-GGGC
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccC-ChhHhcCCCCCEEECcCCe-eCCcCC-HH-HhCC
Confidence 456777777654 322 0111122446777787777422232211 1112356778888887654 221100 01 1223
Q ss_pred ccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhcc
Q 006749 415 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 494 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 494 (632)
++|++|+++++...... +..+..+++|++|++++|.. +......+....++|++|++++ +.++...... +...
T Consensus 125 ~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~~L~~L~L~~-N~l~~~~~~~-~~~l- 197 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTL---PPSISSLPNLVGITFDGNRI-SGAIPDSYGSFSKLFTSMTISR-NRLTGKIPPT-FANL- 197 (313)
T ss_dssp TTCCEEECCSSEEESCC---CGGGGGCTTCCEEECCSSCC-EEECCGGGGCCCTTCCEEECCS-SEEEEECCGG-GGGC-
T ss_pred CCCCEEeCCCCccCCcC---ChHHhcCCCCCeEECcCCcc-cCcCCHHHhhhhhcCcEEECcC-CeeeccCChH-HhCC-
Confidence 78888888876433222 23355688899999888753 2111122332223899999987 3333211111 1222
Q ss_pred CCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccC
Q 006749 495 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQL 574 (632)
Q Consensus 495 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 574 (632)
.|+.|+++++ .++......+. .+++|+.|++++ +.++..... ...+++|++|++++|.+++.....+. .++
T Consensus 198 -~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~ 268 (313)
T 1ogq_A 198 -NLAFVDLSRN-MLEGDASVLFG--SDKNTQKIHLAK-NSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLT--QLK 268 (313)
T ss_dssp -CCSEEECCSS-EEEECCGGGCC--TTSCCSEEECCS-SEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGG--GCT
T ss_pred -cccEEECcCC-cccCcCCHHHh--cCCCCCEEECCC-CceeeecCc--ccccCCCCEEECcCCcccCcCChHHh--cCc
Confidence 5999999885 45433233222 478999999998 466532221 34589999999999998765555555 788
Q ss_pred CccEEeccCCCCcCcchHHHHHHhCCccccccccccCCCC
Q 006749 575 NLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSIN 614 (632)
Q Consensus 575 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 614 (632)
+|++|++++|. ++.. ++.. ...++|+.|++++++.+.
T Consensus 269 ~L~~L~Ls~N~-l~~~-ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 269 FLHSLNVSFNN-LCGE-IPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp TCCEEECCSSE-EEEE-CCCS-TTGGGSCGGGTCSSSEEE
T ss_pred CCCEEECcCCc-cccc-CCCC-ccccccChHHhcCCCCcc
Confidence 99999999975 6533 3333 456779999999866443
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.33 E-value=3.1e-12 Score=127.13 Aligned_cols=166 Identities=11% Similarity=0.055 Sum_probs=100.7
Q ss_pred hcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhh
Q 006749 386 AAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGK 465 (632)
Q Consensus 386 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~ 465 (632)
.+++|+.|+++++..++..... ....+++|++|+++++... .. .+..+..+++|++|++++|. ++... ..+..
T Consensus 147 ~l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~l~-~~--~~~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~ 219 (353)
T 2z80_A 147 HLTKLQILRVGNMDTFTKIQRK--DFAGLTFLEELEIDASDLQ-SY--EPKSLKSIQNVSHLILHMKQ-HILLL-EIFVD 219 (353)
T ss_dssp TCTTCCEEEEEESSSCCEECTT--TTTTCCEEEEEEEEETTCC-EE--CTTTTTTCSEEEEEEEECSC-STTHH-HHHHH
T ss_pred cCCCCcEEECCCCccccccCHH--HccCCCCCCEEECCCCCcC-cc--CHHHHhccccCCeecCCCCc-cccch-hhhhh
Confidence 3456666666554322221100 0112377888888875432 21 12345678899999999986 44333 23334
Q ss_pred cCCCCcEEEeccccCCCchhhHHHH--hhccCCccEEecCCCCCCChHHHHHHHh--hcCCCCCeeeccCCCCCChHHHH
Q 006749 466 LCPQLQHVDLSGLYGITDVGIFPLL--ESCKAGLVKVNLSGCLNLTDEVVLALAR--LHSETLELLNLDGCRKITDASLV 541 (632)
Q Consensus 466 ~~~~L~~L~l~~~~~l~~~~~~~l~--~~~~~~L~~L~l~~c~~l~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~ 541 (632)
.+++|+.|++++ +.++......+. ... ..++.++++++ .+++..+..+.. ..+++|+.|++++ +.++....
T Consensus 220 ~~~~L~~L~L~~-n~l~~~~~~~l~~~~~~-~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~l~~i~~- 294 (353)
T 2z80_A 220 VTSSVECLELRD-TDLDTFHFSELSTGETN-SLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSR-NQLKSVPD- 294 (353)
T ss_dssp HTTTEEEEEEES-CBCTTCCCC------CC-CCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCS-SCCCCCCT-
T ss_pred hcccccEEECCC-Ccccccccccccccccc-chhhccccccc-cccCcchhhhHHHHhcccCCCEEECCC-CCCCccCH-
Confidence 569999999998 444433222211 122 37889999885 677665443321 1589999999999 57764332
Q ss_pred HHHhcCCCcCeEeccCCCCChh
Q 006749 542 AIGNNCMFLSYLDVSKCAITDM 563 (632)
Q Consensus 542 ~l~~~~~~L~~L~L~~~~i~~~ 563 (632)
.+...+++|++|+|++|++...
T Consensus 295 ~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 295 GIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp TTTTTCTTCCEEECCSSCBCCC
T ss_pred HHHhcCCCCCEEEeeCCCccCc
Confidence 2234589999999999987753
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.33 E-value=6.4e-12 Score=132.78 Aligned_cols=266 Identities=17% Similarity=0.157 Sum_probs=156.8
Q ss_pred CCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCcccceecccCCCCCcccchhhcccccCC
Q 006749 256 RNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGL 335 (632)
Q Consensus 256 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 335 (632)
.+++.|+++++. +.. +....+.+|+.|+++++.++.. ...+++|+.|+++++. ++. +.. .+
T Consensus 40 ~~l~~L~ls~n~-L~~-----lp~~l~~~L~~L~L~~N~l~~l-----p~~l~~L~~L~Ls~N~-l~~-----lp~--~l 100 (622)
T 3g06_A 40 NGNAVLNVGESG-LTT-----LPDCLPAHITTLVIPDNNLTSL-----PALPPELRTLEVSGNQ-LTS-----LPV--LP 100 (622)
T ss_dssp HCCCEEECCSSC-CSC-----CCSCCCTTCSEEEECSCCCSCC-----CCCCTTCCEEEECSCC-CSC-----CCC--CC
T ss_pred CCCcEEEecCCC-cCc-----cChhhCCCCcEEEecCCCCCCC-----CCcCCCCCEEEcCCCc-CCc-----CCC--CC
Confidence 368889888754 221 1112223488888888877643 2256788888888774 221 111 45
Q ss_pred CCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccc
Q 006749 336 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSAS 415 (632)
Q Consensus 336 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 415 (632)
++|++|+++++. +.... ..+++|++|+++++. ++.. ...+++|+.|++++|. ++..+ ..++
T Consensus 101 ~~L~~L~Ls~N~-l~~l~-----~~l~~L~~L~L~~N~-l~~l-----p~~l~~L~~L~Ls~N~-l~~l~------~~~~ 161 (622)
T 3g06_A 101 PGLLELSIFSNP-LTHLP-----ALPSGLCKLWIFGNQ-LTSL-----PVLPPGLQELSVSDNQ-LASLP------ALPS 161 (622)
T ss_dssp TTCCEEEECSCC-CCCCC-----CCCTTCCEEECCSSC-CSCC-----CCCCTTCCEEECCSSC-CSCCC------CCCT
T ss_pred CCCCEEECcCCc-CCCCC-----CCCCCcCEEECCCCC-CCcC-----CCCCCCCCEEECcCCc-CCCcC------CccC
Confidence 788888888764 33321 135778888887753 3221 1124778888887754 33211 1236
Q ss_pred cccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccC
Q 006749 416 KLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKA 495 (632)
Q Consensus 416 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 495 (632)
+|+.|+++++. +..+. ..+++|+.|++++|. ++. +....++|+.|++++ +.++.-. . .++
T Consensus 162 ~L~~L~L~~N~-l~~l~------~~~~~L~~L~Ls~N~-l~~-----l~~~~~~L~~L~L~~-N~l~~l~-----~-~~~ 221 (622)
T 3g06_A 162 ELCKLWAYNNQ-LTSLP------MLPSGLQELSVSDNQ-LAS-----LPTLPSELYKLWAYN-NRLTSLP-----A-LPS 221 (622)
T ss_dssp TCCEEECCSSC-CSCCC------CCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCS-SCCSSCC-----C-CCT
T ss_pred CCCEEECCCCC-CCCCc------ccCCCCcEEECCCCC-CCC-----CCCccchhhEEECcC-CcccccC-----C-CCC
Confidence 78888887743 33321 346778888888775 221 112346788888877 3333211 0 113
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 575 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 575 (632)
+|+.|+++++ .++... . .+++|+.|++++ +.++... ..+++|+.|+|++|.++.. ...+. .+++
T Consensus 222 ~L~~L~Ls~N-~L~~lp-----~-~l~~L~~L~Ls~-N~L~~lp-----~~~~~L~~L~Ls~N~L~~l-p~~l~--~l~~ 285 (622)
T 3g06_A 222 GLKELIVSGN-RLTSLP-----V-LPSELKELMVSG-NRLTSLP-----MLPSGLLSLSVYRNQLTRL-PESLI--HLSS 285 (622)
T ss_dssp TCCEEECCSS-CCSCCC-----C-CCTTCCEEECCS-SCCSCCC-----CCCTTCCEEECCSSCCCSC-CGGGG--GSCT
T ss_pred CCCEEEccCC-ccCcCC-----C-CCCcCcEEECCC-CCCCcCC-----cccccCcEEeCCCCCCCcC-CHHHh--hccc
Confidence 7888888774 555422 2 467888888887 4665322 1467788888888877632 22233 6778
Q ss_pred ccEEeccCCCCcCcchHHHHH
Q 006749 576 LQVLSLSSCSEVSNKSMPALK 596 (632)
Q Consensus 576 L~~L~l~~c~~l~~~~~~~~~ 596 (632)
|+.|++++|+ ++......+.
T Consensus 286 L~~L~L~~N~-l~~~~~~~l~ 305 (622)
T 3g06_A 286 ETTVNLEGNP-LSERTLQALR 305 (622)
T ss_dssp TCEEECCSCC-CCHHHHHHHH
T ss_pred cCEEEecCCC-CCCcCHHHHH
Confidence 8888888865 6555444443
No 65
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.33 E-value=1e-13 Score=136.56 Aligned_cols=246 Identities=14% Similarity=0.099 Sum_probs=158.9
Q ss_pred CCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccc
Q 006749 336 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSAS 415 (632)
Q Consensus 336 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 415 (632)
++|+.|+++++. +....... ...+++|++|+++++ .++..... .+..+++|++|+++++. ++.... ..++
T Consensus 54 ~~l~~L~l~~n~-i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~l~~-----~~~~ 123 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISELRKDD-FKGLQHLYALVLVNN-KISKIHEK-AFSPLRKLQKLYISKNH-LVEIPP-----NLPS 123 (332)
T ss_dssp TTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSS-CCCEECGG-GSTTCTTCCEEECCSSC-CCSCCS-----SCCT
T ss_pred CCCeEEECCCCc-CCccCHhH-hhCCCCCcEEECCCC-ccCccCHh-HhhCcCCCCEEECCCCc-CCccCc-----cccc
Confidence 678899998875 44332222 245799999999986 44432212 23467999999999864 332211 1227
Q ss_pred cccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHH-HHHHhhcCCCCcEEEeccccCCCchhhHHHHhhcc
Q 006749 416 KLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNAS-LAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 494 (632)
Q Consensus 416 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 494 (632)
+|++|+++++.. ..+ ....+..+++|++|++++|.. +... .......+ +|++|+++++ .++. +....+
T Consensus 124 ~L~~L~l~~n~i-~~~--~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l-~L~~L~l~~n-~l~~-----l~~~~~ 192 (332)
T 2ft3_A 124 SLVELRIHDNRI-RKV--PKGVFSGLRNMNCIEMGGNPL-ENSGFEPGAFDGL-KLNYLRISEA-KLTG-----IPKDLP 192 (332)
T ss_dssp TCCEEECCSSCC-CCC--CSGGGSSCSSCCEEECCSCCC-BGGGSCTTSSCSC-CCSCCBCCSS-BCSS-----CCSSSC
T ss_pred cCCEEECCCCcc-Ccc--CHhHhCCCccCCEEECCCCcc-ccCCCCcccccCC-ccCEEECcCC-CCCc-----cCcccc
Confidence 999999998653 322 122356799999999999863 2111 11111222 8999999883 3432 111122
Q ss_pred CCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccC
Q 006749 495 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQL 574 (632)
Q Consensus 495 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 574 (632)
++|++|+++++ .++......+. .+++|+.|++++ +.++......+ ..+++|++|++++|+++... ..+. .++
T Consensus 193 ~~L~~L~l~~n-~i~~~~~~~l~--~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~lp-~~l~--~l~ 264 (332)
T 2ft3_A 193 ETLNELHLDHN-KIQAIELEDLL--RYSKLYRLGLGH-NQIRMIENGSL-SFLPTLRELHLDNNKLSRVP-AGLP--DLK 264 (332)
T ss_dssp SSCSCCBCCSS-CCCCCCTTSST--TCTTCSCCBCCS-SCCCCCCTTGG-GGCTTCCEEECCSSCCCBCC-TTGG--GCT
T ss_pred CCCCEEECCCC-cCCccCHHHhc--CCCCCCEEECCC-CcCCcCChhHh-hCCCCCCEEECCCCcCeecC-hhhh--cCc
Confidence 48999999985 55544333333 478999999998 57765443333 35899999999999987421 2233 788
Q ss_pred CccEEeccCCCCcCcchHHHHHHh-----CCccccccccccC
Q 006749 575 NLQVLSLSSCSEVSNKSMPALKKL-----GKTLVGLNLQNCN 611 (632)
Q Consensus 575 ~L~~L~l~~c~~l~~~~~~~~~~~-----~~~L~~L~l~~c~ 611 (632)
+|++|++++|. ++......+... .++|+.|++++++
T Consensus 265 ~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 265 LLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp TCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred cCCEEECCCCC-CCccChhHccccccccccccccceEeecCc
Confidence 99999999965 776554443332 4568999999954
No 66
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.32 E-value=1.7e-12 Score=111.22 Aligned_cols=102 Identities=23% Similarity=0.260 Sum_probs=56.9
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhc---CCCcCeEeccCCC-CChhHHHhhhhh
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNN---CMFLSYLDVSKCA-ITDMGISALSHA 571 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~L~~L~L~~~~-i~~~~~~~l~~~ 571 (632)
.|++|++++|. +++.++..+. .+++|++|++++|..++|.++..+... +++|++|+|++|. |++.++..+.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~--~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-- 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHME--GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-- 136 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGT--TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG--
T ss_pred eEeEEeCcCCC-ccHHHHHHhc--CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh--
Confidence 34455555543 4444444442 356666666666666666666665541 3456666666663 6666666665
Q ss_pred ccCCccEEeccCCCCcCcchH--HHHHHhCCcc
Q 006749 572 EQLNLQVLSLSSCSEVSNKSM--PALKKLGKTL 602 (632)
Q Consensus 572 ~~~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L 602 (632)
.+++|++|++++|+.+++.++ ..+....|++
T Consensus 137 ~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l 169 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169 (176)
T ss_dssp GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTC
T ss_pred cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCc
Confidence 566666666666666666543 3344444443
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.31 E-value=3.1e-13 Score=139.88 Aligned_cols=193 Identities=15% Similarity=0.085 Sum_probs=109.2
Q ss_pred hcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhh
Q 006749 386 AAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGK 465 (632)
Q Consensus 386 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~ 465 (632)
.+++|+.|+++++. ++... ..++|++|++++|.... .. ...+++|+.|++++|. ++......+ .
T Consensus 78 ~l~~L~~L~Ls~N~-l~~l~-------~~~~L~~L~L~~N~l~~-~~-----~~~l~~L~~L~L~~N~-l~~~~~~~~-~ 141 (487)
T 3oja_A 78 SLSTLRTLDLNNNY-VQELL-------VGPSIETLHAANNNISR-VS-----CSRGQGKKNIYLANNK-ITMLRDLDE-G 141 (487)
T ss_dssp TCTTCCEEECCSSE-EEEEE-------ECTTCCEEECCSSCCCC-EE-----ECCCSSCEEEECCSSC-CCSGGGBCG-G
T ss_pred cCCCCCEEEecCCc-CCCCC-------CCCCcCEEECcCCcCCC-CC-----ccccCCCCEEECCCCC-CCCCCchhh-c
Confidence 45566666665542 22211 11566777776643222 21 1235677777777765 222211111 2
Q ss_pred cCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHh
Q 006749 466 LCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGN 545 (632)
Q Consensus 466 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 545 (632)
.+++|+.|++++ +.++......+...++ +|++|+++++ .++... ... .+++|+.|++++ +.++..... ..
T Consensus 142 ~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~-~L~~L~Ls~N-~l~~~~--~~~--~l~~L~~L~Ls~-N~l~~~~~~--~~ 211 (487)
T 3oja_A 142 CRSRVQYLDLKL-NEIDTVNFAELAASSD-TLEHLNLQYN-FIYDVK--GQV--VFAKLKTLDLSS-NKLAFMGPE--FQ 211 (487)
T ss_dssp GGSSEEEEECTT-SCCCEEEGGGGGGGTT-TCCEEECTTS-CCCEEE--CCC--CCTTCCEEECCS-SCCCEECGG--GG
T ss_pred CCCCCCEEECCC-CCCCCcChHHHhhhCC-cccEEecCCC-cccccc--ccc--cCCCCCEEECCC-CCCCCCCHh--Hc
Confidence 347788888877 5555444444433344 7888888775 444331 111 367888888887 466654322 23
Q ss_pred cCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCcccccccc
Q 006749 546 NCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQ 608 (632)
Q Consensus 546 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~ 608 (632)
.+++|+.|+|++|.++... ..+. .+++|+.|++++|+ ++...++.+...++.|+.++++
T Consensus 212 ~l~~L~~L~Ls~N~l~~lp-~~l~--~l~~L~~L~l~~N~-l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 212 SAAGVTWISLRNNKLVLIE-KALR--FSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGTTCSEEECTTSCCCEEC-TTCC--CCTTCCEEECTTCC-BCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCccEEEecCCcCcccc-hhhc--cCCCCCEEEcCCCC-CcCcchHHHHHhCCCCcEEecc
Confidence 4788888888888877421 1222 56788888888866 6544555555556667766664
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.31 E-value=4.2e-13 Score=137.72 Aligned_cols=144 Identities=17% Similarity=0.105 Sum_probs=75.8
Q ss_pred CCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHh
Q 006749 439 SPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALAR 518 (632)
Q Consensus 439 ~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 518 (632)
..+++|++|++++|..+.......+ ..+++|++|+++++ .++... . +..++ +|++|+++++ .++......+.
T Consensus 157 ~~l~~L~~L~l~~~~~l~~i~~~~~-~~l~~L~~L~L~~n-~l~~~~--~-~~~l~-~L~~L~Ls~N-~l~~~~~~~~~- 228 (440)
T 3zyj_A 157 NRIPSLRRLDLGELKRLSYISEGAF-EGLSNLRYLNLAMC-NLREIP--N-LTPLI-KLDELDLSGN-HLSAIRPGSFQ- 228 (440)
T ss_dssp TTCTTCCEEECCCCTTCCEECTTTT-TTCSSCCEEECTTS-CCSSCC--C-CTTCS-SCCEEECTTS-CCCEECTTTTT-
T ss_pred hhCcccCEeCCCCCCCcceeCcchh-hcccccCeecCCCC-cCcccc--c-cCCCc-ccCEEECCCC-ccCccChhhhc-
Confidence 3455555555555443332211111 22456666666552 222110 0 11222 6777777664 44443333232
Q ss_pred hcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHH
Q 006749 519 LHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPAL 595 (632)
Q Consensus 519 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~ 595 (632)
.+++|+.|++++ +.++......+ ..+++|+.|+|++|+++......+. .+++|+.|+|++|+...+..+.++
T Consensus 229 -~l~~L~~L~L~~-n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~Np~~CdC~l~~l 300 (440)
T 3zyj_A 229 -GLMHLQKLWMIQ-SQIQVIERNAF-DNLQSLVEINLAHNNLTLLPHDLFT--PLHHLERIHLHHNPWNCNCDILWL 300 (440)
T ss_dssp -TCTTCCEEECTT-CCCCEECTTSS-TTCTTCCEEECTTSCCCCCCTTTTS--SCTTCCEEECCSSCEECSSTTHHH
T ss_pred -cCccCCEEECCC-CceeEEChhhh-cCCCCCCEEECCCCCCCccChhHhc--cccCCCEEEcCCCCccCCCCchHH
Confidence 367777888777 46655433223 2477888888888877654444344 667788888887664444444443
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.30 E-value=1.9e-13 Score=133.13 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=29.5
Q ss_pred ccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHh--hcCCCCcEEEecc
Q 006749 415 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLG--KLCPQLQHVDLSG 477 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~--~~~~~L~~L~l~~ 477 (632)
++|++|+++++.. ... ....+..+++|++|++++|...+...+..-. ..+++|++|++++
T Consensus 149 ~~L~~L~L~~N~l-~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~ 210 (312)
T 1wwl_A 149 PGLKVLSIAQAHS-LNF--SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210 (312)
T ss_dssp TTCCEEEEESCSC-CCC--CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT
T ss_pred CCCcEEEeeCCCC-ccc--hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC
Confidence 5666666666442 211 1123445667777777776533222221111 3345555555555
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.30 E-value=5.8e-13 Score=130.09 Aligned_cols=233 Identities=19% Similarity=0.167 Sum_probs=153.4
Q ss_pred HHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccc
Q 006749 355 EAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATE 434 (632)
Q Consensus 355 ~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 434 (632)
..+...+++|++|+++++ .++.... ..+..+++|+.|+++++.-..... ...+++|++|++++|. +..+
T Consensus 27 ~~~~~~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~Ls~n~-l~~l--- 95 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNVLYETLD-----LESLSTLRTLDLNNNY-VQEL--- 95 (317)
T ss_dssp HHHHTTGGGCSEEECTTS-CCCCCCH-HHHTTCTTCCEEECTTSCCEEEEE-----ETTCTTCCEEECCSSE-EEEE---
T ss_pred HHHhccCCCCCEEECcCC-ccCcCCH-HHhhCCCcCCEEECCCCcCCcchh-----hhhcCCCCEEECcCCc-cccc---
Confidence 344555678899999886 4443322 233567889999998865222222 2234899999999864 2222
Q ss_pred cccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHH
Q 006749 435 MPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVL 514 (632)
Q Consensus 435 ~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~ 514 (632)
...++|++|++++|. ++... ...+++|++|++++ +.++...-.. +..++ +|++|+++++ .++.....
T Consensus 96 ----~~~~~L~~L~l~~n~-l~~~~----~~~~~~L~~L~l~~-N~l~~~~~~~-~~~l~-~L~~L~Ls~N-~l~~~~~~ 162 (317)
T 3o53_A 96 ----LVGPSIETLHAANNN-ISRVS----CSRGQGKKNIYLAN-NKITMLRDLD-EGCRS-RVQYLDLKLN-EIDTVNFA 162 (317)
T ss_dssp ----EECTTCCEEECCSSC-CSEEE----ECCCSSCEEEECCS-SCCCSGGGBC-TGGGS-SEEEEECTTS-CCCEEEGG
T ss_pred ----cCCCCcCEEECCCCc-cCCcC----ccccCCCCEEECCC-CCCCCccchh-hhccC-CCCEEECCCC-CCCcccHH
Confidence 245899999999986 33221 22368999999998 4554321111 12233 8999999995 66665444
Q ss_pred HHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHH
Q 006749 515 ALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPA 594 (632)
Q Consensus 515 ~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~ 594 (632)
.+.. .+++|+.|++++ +.++... .. ..+++|++|++++|.++..... +. .+++|+.|++++|. ++. ++.
T Consensus 163 ~~~~-~l~~L~~L~L~~-N~l~~~~--~~-~~l~~L~~L~Ls~N~l~~l~~~-~~--~l~~L~~L~L~~N~-l~~--l~~ 231 (317)
T 3o53_A 163 ELAA-SSDTLEHLNLQY-NFIYDVK--GQ-VVFAKLKTLDLSSNKLAFMGPE-FQ--SAAGVTWISLRNNK-LVL--IEK 231 (317)
T ss_dssp GGGG-GTTTCCEEECTT-SCCCEEE--CC-CCCTTCCEEECCSSCCCEECGG-GG--GGTTCSEEECTTSC-CCE--ECT
T ss_pred HHhh-ccCcCCEEECCC-CcCcccc--cc-cccccCCEEECCCCcCCcchhh-hc--ccCcccEEECcCCc-ccc--hhh
Confidence 4443 579999999999 4676542 11 2389999999999998864332 33 68899999999975 753 333
Q ss_pred HHHhCCccccccccccCCCCHHHHHHHHh
Q 006749 595 LKKLGKTLVGLNLQNCNSINSSTVARLVE 623 (632)
Q Consensus 595 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 623 (632)
....+++|+.|++++ +.++...+.....
T Consensus 232 ~~~~l~~L~~L~l~~-N~~~~~~~~~~~~ 259 (317)
T 3o53_A 232 ALRFSQNLEHFDLRG-NGFHCGTLRDFFS 259 (317)
T ss_dssp TCCCCTTCCEEECTT-CCCBHHHHHHHHH
T ss_pred HhhcCCCCCEEEccC-CCccCcCHHHHHh
Confidence 334567899999999 5677434433333
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.29 E-value=6.6e-12 Score=132.69 Aligned_cols=266 Identities=15% Similarity=0.101 Sum_probs=179.2
Q ss_pred CCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhhcccccccccccchhHHHHHhhcCcc
Q 006749 230 PNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKA 309 (632)
Q Consensus 230 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~ 309 (632)
.+++.|+++++. ++... ..+ .++|++|+++++. +.... . ...+|+.|+++++.++.. +...++
T Consensus 40 ~~l~~L~ls~n~-L~~lp-~~l---~~~L~~L~L~~N~-l~~lp-----~-~l~~L~~L~Ls~N~l~~l-----p~~l~~ 102 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLP-DCL---PAHITTLVIPDNN-LTSLP-----A-LPPELRTLEVSGNQLTSL-----PVLPPG 102 (622)
T ss_dssp HCCCEEECCSSC-CSCCC-SCC---CTTCSEEEECSCC-CSCCC-----C-CCTTCCEEEECSCCCSCC-----CCCCTT
T ss_pred CCCcEEEecCCC-cCccC-hhh---CCCCcEEEecCCC-CCCCC-----C-cCCCCCEEEcCCCcCCcC-----CCCCCC
Confidence 469999999753 43211 111 3689999999875 33211 1 223499999999988753 236789
Q ss_pred cceecccCCCCCcccchhhcccccCCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCC
Q 006749 310 LTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGS 389 (632)
Q Consensus 310 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~ 389 (632)
|+.|+++++.. ... . ..+++|+.|+++++. +... ...+++|++|++++|. ++.. . ..+++
T Consensus 103 L~~L~Ls~N~l-~~l-----~--~~l~~L~~L~L~~N~-l~~l-----p~~l~~L~~L~Ls~N~-l~~l--~---~~~~~ 162 (622)
T 3g06_A 103 LLELSIFSNPL-THL-----P--ALPSGLCKLWIFGNQ-LTSL-----PVLPPGLQELSVSDNQ-LASL--P---ALPSE 162 (622)
T ss_dssp CCEEEECSCCC-CCC-----C--CCCTTCCEEECCSSC-CSCC-----CCCCTTCCEEECCSSC-CSCC--C---CCCTT
T ss_pred CCEEECcCCcC-CCC-----C--CCCCCcCEEECCCCC-CCcC-----CCCCCCCCEEECcCCc-CCCc--C---CccCC
Confidence 99999988742 211 1 145889999999885 4432 2235899999999873 4321 1 13578
Q ss_pred CCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCC
Q 006749 390 LEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQ 469 (632)
Q Consensus 390 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~ 469 (632)
|+.|+++++. ++... ..+++|+.|++++|. +..+. ...++|+.|++++|. ++. +...+++
T Consensus 163 L~~L~L~~N~-l~~l~------~~~~~L~~L~Ls~N~-l~~l~------~~~~~L~~L~L~~N~-l~~-----l~~~~~~ 222 (622)
T 3g06_A 163 LCKLWAYNNQ-LTSLP------MLPSGLQELSVSDNQ-LASLP------TLPSELYKLWAYNNR-LTS-----LPALPSG 222 (622)
T ss_dssp CCEEECCSSC-CSCCC------CCCTTCCEEECCSSC-CSCCC------CCCTTCCEEECCSSC-CSS-----CCCCCTT
T ss_pred CCEEECCCCC-CCCCc------ccCCCCcEEECCCCC-CCCCC------CccchhhEEECcCCc-ccc-----cCCCCCC
Confidence 9999998854 44322 335899999999865 33331 235899999999985 332 2234589
Q ss_pred CcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCC
Q 006749 470 LQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMF 549 (632)
Q Consensus 470 L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 549 (632)
|+.|++++ +.++.-. ..+++|+.|+++++ .++.... .+++|+.|++++ +.++... .. ...+++
T Consensus 223 L~~L~Ls~-N~L~~lp------~~l~~L~~L~Ls~N-~L~~lp~------~~~~L~~L~Ls~-N~L~~lp-~~-l~~l~~ 285 (622)
T 3g06_A 223 LKELIVSG-NRLTSLP------VLPSELKELMVSGN-RLTSLPM------LPSGLLSLSVYR-NQLTRLP-ES-LIHLSS 285 (622)
T ss_dssp CCEEECCS-SCCSCCC------CCCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCS-SCCCSCC-GG-GGGSCT
T ss_pred CCEEEccC-CccCcCC------CCCCcCcEEECCCC-CCCcCCc------ccccCcEEeCCC-CCCCcCC-HH-Hhhccc
Confidence 99999998 4555321 22248999999995 5553221 368999999999 4776432 22 345999
Q ss_pred cCeEeccCCCCChhHHHhhh
Q 006749 550 LSYLDVSKCAITDMGISALS 569 (632)
Q Consensus 550 L~~L~L~~~~i~~~~~~~l~ 569 (632)
|+.|+|++|+++...+..+.
T Consensus 286 L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 286 ETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TCEEECCSCCCCHHHHHHHH
T ss_pred cCEEEecCCCCCCcCHHHHH
Confidence 99999999999887666554
No 72
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.29 E-value=5.8e-13 Score=137.18 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=49.9
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 575 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 575 (632)
+|+.|+++++ .++......+. .+++|+.|++++ +.++......+ ..+++|+.|+|++|+++......+. .+++
T Consensus 219 ~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~L~~-n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~ 291 (452)
T 3zyi_A 219 GLEELEMSGN-HFPEIRPGSFH--GLSSLKKLWVMN-SQVSLIERNAF-DGLASLVELNLAHNNLSSLPHDLFT--PLRY 291 (452)
T ss_dssp TCCEEECTTS-CCSEECGGGGT--TCTTCCEEECTT-SCCCEECTTTT-TTCTTCCEEECCSSCCSCCCTTSST--TCTT
T ss_pred cccEEECcCC-cCcccCccccc--CccCCCEEEeCC-CcCceECHHHh-cCCCCCCEEECCCCcCCccChHHhc--cccC
Confidence 5666666663 44433222222 366777777776 45554332222 2367777777777776653333333 5667
Q ss_pred ccEEeccCCCCcCcchHH
Q 006749 576 LQVLSLSSCSEVSNKSMP 593 (632)
Q Consensus 576 L~~L~l~~c~~l~~~~~~ 593 (632)
|+.|++++|+...+..+.
T Consensus 292 L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 292 LVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp CCEEECCSSCEECSTTTH
T ss_pred CCEEEccCCCcCCCCCch
Confidence 777777776643333333
No 73
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.29 E-value=2.9e-13 Score=132.62 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=17.5
Q ss_pred ccccEEeccccCCCCccccccc------cCCCCCCCCeEeccCC
Q 006749 415 SKLKSLTLVKCMGIKDMATEMP------MLSPNCSLRSLSIRNC 452 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~------~~~~~~~L~~L~l~~~ 452 (632)
++|++|++++|.....+..... .+..+++|++|++++|
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n 193 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC
Confidence 5566666655544443322111 0123555555555554
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.27 E-value=1.1e-12 Score=126.25 Aligned_cols=212 Identities=17% Similarity=0.107 Sum_probs=121.4
Q ss_pred CccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCC
Q 006749 362 LNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPN 441 (632)
Q Consensus 362 ~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 441 (632)
++|++|+++++ .++.... ..+..+++|+.|+++++. ++..... ....+++|++|+++++..+..+. ...+..+
T Consensus 32 ~~l~~L~l~~n-~i~~~~~-~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n~~l~~~~--~~~~~~l 104 (285)
T 1ozn_A 32 AASQRIFLHGN-RISHVPA-ASFRACRNLTILWLHSNV-LARIDAA--AFTGLALLEQLDLSDNAQLRSVD--PATFHGL 104 (285)
T ss_dssp TTCSEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CCEECTT--TTTTCTTCCEEECCSCTTCCCCC--TTTTTTC
T ss_pred CCceEEEeeCC-cCCccCH-HHcccCCCCCEEECCCCc-cceeCHh--hcCCccCCCEEeCCCCCCccccC--HHHhcCC
Confidence 78999999885 4443221 122457889999998753 3322110 11223788888888876454442 2234567
Q ss_pred CCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcC
Q 006749 442 CSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHS 521 (632)
Q Consensus 442 ~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 521 (632)
++|++|++++|.. +.... .....+++|++|++++ +.++.... ..+..++ +|++|+++++ .++......+. .+
T Consensus 105 ~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~l~~-n~l~~~~~-~~~~~l~-~L~~L~l~~n-~l~~~~~~~~~--~l 176 (285)
T 1ozn_A 105 GRLHTLHLDRCGL-QELGP-GLFRGLAALQYLYLQD-NALQALPD-DTFRDLG-NLTHLFLHGN-RISSVPERAFR--GL 176 (285)
T ss_dssp TTCCEEECTTSCC-CCCCT-TTTTTCTTCCEEECCS-SCCCCCCT-TTTTTCT-TCCEEECCSS-CCCEECTTTTT--TC
T ss_pred cCCCEEECCCCcC-CEECH-hHhhCCcCCCEEECCC-CcccccCH-hHhccCC-CccEEECCCC-cccccCHHHhc--Cc
Confidence 8888888888752 22111 1123457888888877 33332111 1122233 7778887774 44433322222 36
Q ss_pred CCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchH
Q 006749 522 ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSM 592 (632)
Q Consensus 522 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~ 592 (632)
++|+.|++++ +.++......+. .+++|+.|++++|.+++.....+. .+++|+.|++++|+...+...
T Consensus 177 ~~L~~L~l~~-n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 177 HSLDRLLLHQ-NRVAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALA--PLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTCCEEECCS-SCCCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHHT--TCTTCCEEECCSSCEECSGGG
T ss_pred cccCEEECCC-CcccccCHhHcc-CcccccEeeCCCCcCCcCCHHHcc--cCcccCEEeccCCCccCCCCc
Confidence 7777777777 456554333332 367777777777777665544444 667777777777663333333
No 75
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=9.9e-11 Score=116.09 Aligned_cols=98 Identities=21% Similarity=0.235 Sum_probs=53.4
Q ss_pred CCCcEEEeccccCCCchhhHHHH---hhccCCccEEecCCCCCCChHHHHHHHhh--cCCCCCeeeccCCCCCChHHHHH
Q 006749 468 PQLQHVDLSGLYGITDVGIFPLL---ESCKAGLVKVNLSGCLNLTDEVVLALARL--HSETLELLNLDGCRKITDASLVA 542 (632)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~---~~~~~~L~~L~l~~c~~l~~~~~~~l~~~--~~~~L~~L~l~~c~~l~~~~~~~ 542 (632)
++|++|++++ +.+++.+...+. ..++ +|++|+|++| .+++.+...+... ..++|+.|++++ +.+++.+...
T Consensus 155 ~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~-N~i~~~g~~~ 230 (372)
T 3un9_A 155 CQITTLRLSN-NPLTAAGVAVLMEGLAGNT-SVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAY-NGAGDTAALA 230 (372)
T ss_dssp CCCCEEECCS-SCCHHHHHHHHHHHHHTCS-SCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCS-SCCCHHHHHH
T ss_pred CccceeeCCC-CCCChHHHHHHHHHHhcCC-CcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCC-CCCCHHHHHH
Confidence 4445555544 234443333332 1222 5555555553 4555544433321 345777777777 4677666555
Q ss_pred HHh---cCCCcCeEeccCCCCChhHHHhhh
Q 006749 543 IGN---NCMFLSYLDVSKCAITDMGISALS 569 (632)
Q Consensus 543 l~~---~~~~L~~L~L~~~~i~~~~~~~l~ 569 (632)
+.. .+++|++|+|++|.|++.+...+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 542 357777777777777777776665
No 76
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.26 E-value=7.3e-13 Score=136.43 Aligned_cols=171 Identities=21% Similarity=0.166 Sum_probs=105.6
Q ss_pred CCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHH
Q 006749 438 LSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALA 517 (632)
Q Consensus 438 ~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 517 (632)
+..+++|++|++++|. +...... ....+++|++|++++++.+...... .+..++ +|++|+++++ .++.. ..+.
T Consensus 143 ~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~-~L~~L~L~~n-~l~~~--~~~~ 215 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNP-IESIPSY-AFNRVPSLMRLDLGELKKLEYISEG-AFEGLF-NLKYLNLGMC-NIKDM--PNLT 215 (452)
T ss_dssp SSSCTTCCEEECCSCC-CCEECTT-TTTTCTTCCEEECCCCTTCCEECTT-TTTTCT-TCCEEECTTS-CCSSC--CCCT
T ss_pred hcccCCCCEEECCCCC-cceeCHh-HHhcCCcccEEeCCCCCCccccChh-hccCCC-CCCEEECCCC-ccccc--cccc
Confidence 3445666666666654 2211111 1223466777777665444321111 112233 7888888775 44432 1122
Q ss_pred hhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHH
Q 006749 518 RLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKK 597 (632)
Q Consensus 518 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 597 (632)
.+++|+.|++++ +.++......+ ..+++|+.|+|++|.++......+. .+++|+.|+|++|. ++...... ..
T Consensus 216 --~l~~L~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~-~~ 287 (452)
T 3zyi_A 216 --PLVGLEELEMSG-NHFPEIRPGSF-HGLSSLKKLWVMNSQVSLIERNAFD--GLASLVELNLAHNN-LSSLPHDL-FT 287 (452)
T ss_dssp --TCTTCCEEECTT-SCCSEECGGGG-TTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSC-CSCCCTTS-ST
T ss_pred --ccccccEEECcC-CcCcccCcccc-cCccCCCEEEeCCCcCceECHHHhc--CCCCCCEEECCCCc-CCccChHH-hc
Confidence 478999999999 57766544333 3589999999999998876555555 78899999999964 76443322 34
Q ss_pred hCCccccccccccCCCCHHHHHHHHh
Q 006749 598 LGKTLVGLNLQNCNSINSSTVARLVE 623 (632)
Q Consensus 598 ~~~~L~~L~l~~c~~l~~~~~~~l~~ 623 (632)
.+++|+.|++++++-..+..+.++..
T Consensus 288 ~l~~L~~L~L~~Np~~CdC~~~~l~~ 313 (452)
T 3zyi_A 288 PLRYLVELHLHHNPWNCDCDILWLAW 313 (452)
T ss_dssp TCTTCCEEECCSSCEECSTTTHHHHH
T ss_pred cccCCCEEEccCCCcCCCCCchHHHH
Confidence 46789999999976555555555443
No 77
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.25 E-value=6.1e-13 Score=136.50 Aligned_cols=192 Identities=18% Similarity=0.163 Sum_probs=127.7
Q ss_pred ccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhcc
Q 006749 415 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 494 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 494 (632)
++|++|+++++. +..+. ...+..+++|++|++++|. +...... ....+++|++|+++++..+...... .+..++
T Consensus 112 ~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~N~-i~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~ 185 (440)
T 3zyj_A 112 ANLNTLELFDNR-LTTIP--NGAFVYLSKLKELWLRNNP-IESIPSY-AFNRIPSLRRLDLGELKRLSYISEG-AFEGLS 185 (440)
T ss_dssp SSCCEEECCSSC-CSSCC--TTTSCSCSSCCEEECCSCC-CCEECTT-TTTTCTTCCEEECCCCTTCCEECTT-TTTTCS
T ss_pred ccCCEEECCCCc-CCeeC--HhHhhccccCceeeCCCCc-ccccCHH-HhhhCcccCEeCCCCCCCcceeCcc-hhhccc
Confidence 677777777643 33221 1235678889999998875 3321111 2235699999999986665432211 223344
Q ss_pred CCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccC
Q 006749 495 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQL 574 (632)
Q Consensus 495 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 574 (632)
+|++|+++++ .++... .+. .+++|+.|++++ +.++......+. .+++|+.|+|++|.++......+. .++
T Consensus 186 -~L~~L~L~~n-~l~~~~--~~~--~l~~L~~L~Ls~-N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~--~l~ 255 (440)
T 3zyj_A 186 -NLRYLNLAMC-NLREIP--NLT--PLIKLDELDLSG-NHLSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFD--NLQ 255 (440)
T ss_dssp -SCCEEECTTS-CCSSCC--CCT--TCSSCCEEECTT-SCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTSST--TCT
T ss_pred -ccCeecCCCC-cCcccc--ccC--CCcccCEEECCC-CccCccChhhhc-cCccCCEEECCCCceeEEChhhhc--CCC
Confidence 8999999996 454322 222 578999999999 577765433333 589999999999998876555555 788
Q ss_pred CccEEeccCCCCcCcchHHHHHHhCCccccccccccCCCCHHHHHHHHhc
Q 006749 575 NLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVES 624 (632)
Q Consensus 575 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 624 (632)
+|+.|+|++|. ++...... ...+++|+.|++++++-..+..+.++..+
T Consensus 256 ~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~Np~~CdC~l~~l~~~ 303 (440)
T 3zyj_A 256 SLVEINLAHNN-LTLLPHDL-FTPLHHLERIHLHHNPWNCNCDILWLSWW 303 (440)
T ss_dssp TCCEEECTTSC-CCCCCTTT-TSSCTTCCEEECCSSCEECSSTTHHHHHH
T ss_pred CCCEEECCCCC-CCccChhH-hccccCCCEEEcCCCCccCCCCchHHHHH
Confidence 99999999965 76443333 33457899999999665566555555543
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.23 E-value=4.2e-11 Score=116.14 Aligned_cols=191 Identities=18% Similarity=0.203 Sum_probs=127.7
Q ss_pred CccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCC
Q 006749 362 LNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPN 441 (632)
Q Consensus 362 ~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 441 (632)
++|++|++.++. +... .. +..+++|+.|+++++. ++.... ...+++|++|+++++. +..+ ..+..+
T Consensus 41 ~~L~~L~l~~~~-i~~l--~~-~~~l~~L~~L~L~~n~-i~~~~~----~~~l~~L~~L~L~~n~-l~~~----~~~~~l 106 (308)
T 1h6u_A 41 DGITTLSAFGTG-VTTI--EG-VQYLNNLIGLELKDNQ-ITDLAP----LKNLTKITELELSGNP-LKNV----SAIAGL 106 (308)
T ss_dssp HTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECCSSC-CCCCGG----GTTCCSCCEEECCSCC-CSCC----GGGTTC
T ss_pred CCcCEEEeeCCC-ccCc--hh-hhccCCCCEEEccCCc-CCCChh----HccCCCCCEEEccCCc-CCCc----hhhcCC
Confidence 789999998864 3331 12 3467999999998864 433322 2334899999999865 4433 245678
Q ss_pred CCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcC
Q 006749 442 CSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHS 521 (632)
Q Consensus 442 ~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 521 (632)
++|++|++++|. ++... . ...+++|++|++++ +.+++... +..++ +|++|++++| .+++... +. .+
T Consensus 107 ~~L~~L~l~~n~-l~~~~--~-l~~l~~L~~L~l~~-n~l~~~~~---l~~l~-~L~~L~l~~n-~l~~~~~--l~--~l 172 (308)
T 1h6u_A 107 QSIKTLDLTSTQ-ITDVT--P-LAGLSNLQVLYLDL-NQITNISP---LAGLT-NLQYLSIGNA-QVSDLTP--LA--NL 172 (308)
T ss_dssp TTCCEEECTTSC-CCCCG--G-GTTCTTCCEEECCS-SCCCCCGG---GGGCT-TCCEEECCSS-CCCCCGG--GT--TC
T ss_pred CCCCEEECCCCC-CCCch--h-hcCCCCCCEEECCC-CccCcCcc---ccCCC-CccEEEccCC-cCCCChh--hc--CC
Confidence 899999999886 33221 1 34568899999988 34443221 33344 8899999885 5554322 22 57
Q ss_pred CCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCc
Q 006749 522 ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSN 589 (632)
Q Consensus 522 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~ 589 (632)
++|+.|++++ +.+++... ...+++|++|++++|++++.. .+. .+++|+.|++++|+ ++.
T Consensus 173 ~~L~~L~l~~-n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~--~l~--~l~~L~~L~l~~N~-i~~ 231 (308)
T 1h6u_A 173 SKLTTLKADD-NKISDISP---LASLPNLIEVHLKNNQISDVS--PLA--NTSNLFIVTLTNQT-ITN 231 (308)
T ss_dssp TTCCEEECCS-SCCCCCGG---GGGCTTCCEEECTTSCCCBCG--GGT--TCTTCCEEEEEEEE-EEC
T ss_pred CCCCEEECCC-CccCcChh---hcCCCCCCEEEccCCccCccc--ccc--CCCCCCEEEccCCe-eec
Confidence 8899999988 46665432 345888999999998887654 244 78889999988865 543
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.23 E-value=2.9e-12 Score=124.67 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=43.9
Q ss_pred cCCCCCeeeccCCCCCChHHHHHHHh--cCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHH
Q 006749 520 HSETLELLNLDGCRKITDASLVAIGN--NCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKK 597 (632)
Q Consensus 520 ~~~~L~~L~l~~c~~l~~~~~~~l~~--~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 597 (632)
.+++|++|++++ +.+++.....+.. ++++|++|+|++|+++.. .. .-.++|+.|++++|. ++.... ..
T Consensus 222 ~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l--p~---~~~~~L~~L~Ls~N~-l~~~~~---~~ 291 (310)
T 4glp_A 222 AGVQPHSLDLSH-NSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV--PK---GLPAKLRVLDLSSNR-LNRAPQ---PD 291 (310)
T ss_dssp HTCCCSSEECTT-SCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC--CS---CCCSCCSCEECCSCC-CCSCCC---TT
T ss_pred cCCCCCEEECCC-CCCCccchhhHHhccCcCcCCEEECCCCCCCch--hh---hhcCCCCEEECCCCc-CCCCch---hh
Confidence 356666666666 4554432111111 125777777777766531 11 112567777777754 543211 13
Q ss_pred hCCccccccccccCCCCH
Q 006749 598 LGKTLVGLNLQNCNSINS 615 (632)
Q Consensus 598 ~~~~L~~L~l~~c~~l~~ 615 (632)
.+++|++|++++ +.+++
T Consensus 292 ~l~~L~~L~L~~-N~l~~ 308 (310)
T 4glp_A 292 ELPEVDNLTLDG-NPFLV 308 (310)
T ss_dssp SCCCCSCEECSS-TTTSC
T ss_pred hCCCccEEECcC-CCCCC
Confidence 345677777776 45543
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.19 E-value=6.4e-12 Score=130.03 Aligned_cols=223 Identities=20% Similarity=0.137 Sum_probs=149.1
Q ss_pred cCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCC
Q 006749 360 GCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLS 439 (632)
Q Consensus 360 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 439 (632)
.+++|+.|+|+++ .++.... ..+..+++|+.|+++++.-....+ ...+++|++|++++|. +..+ .
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~-l~~l-------~ 96 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNVLYETLD-----LESLSTLRTLDLNNNY-VQEL-------L 96 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCG-GGGTTCTTCCEEECTTSCCEEEEE-----CTTCTTCCEEECCSSE-EEEE-------E
T ss_pred cCCCccEEEeeCC-cCCCCCH-HHHhCCCCCCEEEeeCCCCCCCcc-----cccCCCCCEEEecCCc-CCCC-------C
Confidence 3458899999886 3433211 123467899999998865222222 2334899999999964 3332 2
Q ss_pred CCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhh
Q 006749 440 PNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARL 519 (632)
Q Consensus 440 ~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 519 (632)
..++|++|++++|.. +... ...+++|+.|++++ +.++..... .+..++ +|+.|+++++ .++...+..+..
T Consensus 97 ~~~~L~~L~L~~N~l-~~~~----~~~l~~L~~L~L~~-N~l~~~~~~-~~~~l~-~L~~L~Ls~N-~l~~~~~~~l~~- 166 (487)
T 3oja_A 97 VGPSIETLHAANNNI-SRVS----CSRGQGKKNIYLAN-NKITMLRDL-DEGCRS-RVQYLDLKLN-EIDTVNFAELAA- 166 (487)
T ss_dssp ECTTCCEEECCSSCC-CCEE----ECCCSSCEEEECCS-SCCCSGGGB-CGGGGS-SEEEEECTTS-CCCEEEGGGGGG-
T ss_pred CCCCcCEEECcCCcC-CCCC----ccccCCCCEEECCC-CCCCCCCch-hhcCCC-CCCEEECCCC-CCCCcChHHHhh-
Confidence 348999999999863 3211 12368999999998 455432211 122333 8999999995 676655554543
Q ss_pred cCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhC
Q 006749 520 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLG 599 (632)
Q Consensus 520 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 599 (632)
.+++|+.|++++ +.++.... . ..+++|+.|+|++|.++..... +. .+++|+.|++++|. ++. ++.....+
T Consensus 167 ~l~~L~~L~Ls~-N~l~~~~~--~-~~l~~L~~L~Ls~N~l~~~~~~-~~--~l~~L~~L~Ls~N~-l~~--lp~~l~~l 236 (487)
T 3oja_A 167 SSDTLEHLNLQY-NFIYDVKG--Q-VVFAKLKTLDLSSNKLAFMGPE-FQ--SAAGVTWISLRNNK-LVL--IEKALRFS 236 (487)
T ss_dssp GTTTCCEEECTT-SCCCEEEC--C-CCCTTCCEEECCSSCCCEECGG-GG--GGTTCSEEECTTSC-CCE--ECTTCCCC
T ss_pred hCCcccEEecCC-Cccccccc--c-ccCCCCCEEECCCCCCCCCCHh-Hc--CCCCccEEEecCCc-Ccc--cchhhccC
Confidence 589999999999 56765421 1 2489999999999998864333 33 78899999999965 753 33334456
Q ss_pred CccccccccccCCCCHHHH
Q 006749 600 KTLVGLNLQNCNSINSSTV 618 (632)
Q Consensus 600 ~~L~~L~l~~c~~l~~~~~ 618 (632)
++|+.|++++| .+....+
T Consensus 237 ~~L~~L~l~~N-~l~c~~~ 254 (487)
T 3oja_A 237 QNLEHFDLRGN-GFHCGTL 254 (487)
T ss_dssp TTCCEEECTTC-CBCHHHH
T ss_pred CCCCEEEcCCC-CCcCcch
Confidence 78999999994 5664333
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.19 E-value=1e-10 Score=113.34 Aligned_cols=194 Identities=19% Similarity=0.175 Sum_probs=135.3
Q ss_pred CCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcc
Q 006749 334 GLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNS 413 (632)
Q Consensus 334 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 413 (632)
.+++|++|+++++. +.... . ...+++|+.|+++++ .+.+... +..+++|+.|+++++. ++... . ...
T Consensus 39 ~l~~L~~L~l~~~~-i~~l~--~-~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~~~~---~-~~~ 105 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTIE--G-VQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNVS---A-IAG 105 (308)
T ss_dssp HHHTCCEEECTTSC-CCCCT--T-GGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCCG---G-GTT
T ss_pred HcCCcCEEEeeCCC-ccCch--h-hhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CCCch---h-hcC
Confidence 46899999999885 44322 2 345799999999986 4443221 4578999999999865 44332 1 223
Q ss_pred cccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhc
Q 006749 414 ASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESC 493 (632)
Q Consensus 414 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 493 (632)
+++|++|++++|. +..+ ..+..+++|++|++++|..-.... ...+++|++|+++++ .+++... +..+
T Consensus 106 l~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n-~l~~~~~---l~~l 172 (308)
T 1h6u_A 106 LQSIKTLDLTSTQ-ITDV----TPLAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNA-QVSDLTP---LANL 172 (308)
T ss_dssp CTTCCEEECTTSC-CCCC----GGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSS-CCCCCGG---GTTC
T ss_pred CCCCCEEECCCCC-CCCc----hhhcCCCCCCEEECCCCccCcCcc----ccCCCCccEEEccCC-cCCCChh---hcCC
Confidence 4899999999975 3333 236789999999999986322211 345699999999984 5553221 3444
Q ss_pred cCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChh
Q 006749 494 KAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDM 563 (632)
Q Consensus 494 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~ 563 (632)
+ +|+.|+++++ .+++... +. .+++|+.|++++ +.+++.. . ...+++|+.|++++|+++..
T Consensus 173 ~-~L~~L~l~~n-~l~~~~~--l~--~l~~L~~L~L~~-N~l~~~~--~-l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 173 S-KLTTLKADDN-KISDISP--LA--SLPNLIEVHLKN-NQISDVS--P-LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp T-TCCEEECCSS-CCCCCGG--GG--GCTTCCEEECTT-SCCCBCG--G-GTTCTTCCEEEEEEEEEECC
T ss_pred C-CCCEEECCCC-ccCcChh--hc--CCCCCCEEEccC-CccCccc--c-ccCCCCCCEEEccCCeeecC
Confidence 4 8999999985 5554332 22 589999999999 4776654 2 35699999999999987653
No 82
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.18 E-value=9.4e-13 Score=128.97 Aligned_cols=222 Identities=18% Similarity=0.201 Sum_probs=133.9
Q ss_pred CccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCC
Q 006749 362 LNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPN 441 (632)
Q Consensus 362 ~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 441 (632)
++++.|+++++. +.. +..-+..+++|++|+++++. ++... ..+ ..+++|++|++++|.. ..+ +..+..+
T Consensus 81 ~~l~~L~L~~n~-l~~--lp~~l~~l~~L~~L~L~~n~-l~~lp--~~~-~~l~~L~~L~Ls~n~l-~~l---p~~l~~l 149 (328)
T 4fcg_A 81 PGRVALELRSVP-LPQ--FPDQAFRLSHLQHMTIDAAG-LMELP--DTM-QQFAGLETLTLARNPL-RAL---PASIASL 149 (328)
T ss_dssp TTCCEEEEESSC-CSS--CCSCGGGGTTCSEEEEESSC-CCCCC--SCG-GGGTTCSEEEEESCCC-CCC---CGGGGGC
T ss_pred cceeEEEccCCC-chh--cChhhhhCCCCCEEECCCCC-ccchh--HHH-hccCCCCEEECCCCcc-ccC---cHHHhcC
Confidence 556666665532 221 11111235666666666543 22111 111 2237888888888643 333 2346678
Q ss_pred CCCCeEeccCCCCCCHHHHHHH--------hhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHH
Q 006749 442 CSLRSLSIRNCPGFGNASLAML--------GKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVV 513 (632)
Q Consensus 442 ~~L~~L~l~~~~~l~~~~l~~~--------~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~ 513 (632)
++|++|++++|...+.... .+ ...+++|++|+++++ .++ .+...+..++ +|++|++++| .++....
T Consensus 150 ~~L~~L~L~~n~~~~~~p~-~~~~~~~~~~~~~l~~L~~L~L~~n-~l~--~lp~~l~~l~-~L~~L~L~~N-~l~~l~~ 223 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPE-PLASTDASGEHQGLVNLQSLRLEWT-GIR--SLPASIANLQ-NLKSLKIRNS-PLSALGP 223 (328)
T ss_dssp TTCCEEEEEEETTCCCCCS-CSEEEC-CCCEEESTTCCEEEEEEE-CCC--CCCGGGGGCT-TCCEEEEESS-CCCCCCG
T ss_pred cCCCEEECCCCCCccccCh-hHhhccchhhhccCCCCCEEECcCC-CcC--cchHhhcCCC-CCCEEEccCC-CCCcCch
Confidence 9999999999765432211 11 123689999999984 444 2222234454 8999999985 4543211
Q ss_pred HHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHH
Q 006749 514 LALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMP 593 (632)
Q Consensus 514 ~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~ 593 (632)
.+. .+++|+.|++++|+..... ... ...+++|+.|+|++|++.......+. .+++|++|++++|+.++ .++
T Consensus 224 -~l~--~l~~L~~L~Ls~n~~~~~~-p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~--~l~~L~~L~L~~n~~~~--~iP 294 (328)
T 4fcg_A 224 -AIH--HLPKLEELDLRGCTALRNY-PPI-FGGRAPLKRLILKDCSNLLTLPLDIH--RLTQLEKLDLRGCVNLS--RLP 294 (328)
T ss_dssp -GGG--GCTTCCEEECTTCTTCCBC-CCC-TTCCCCCCEEECTTCTTCCBCCTTGG--GCTTCCEEECTTCTTCC--CCC
T ss_pred -hhc--cCCCCCEEECcCCcchhhh-HHH-hcCCCCCCEEECCCCCchhhcchhhh--cCCCCCEEeCCCCCchh--hcc
Confidence 222 5899999999996544332 112 24589999999999976654444444 78899999999988553 333
Q ss_pred HHHHhCCccccccccc
Q 006749 594 ALKKLGKTLVGLNLQN 609 (632)
Q Consensus 594 ~~~~~~~~L~~L~l~~ 609 (632)
.....+++|+.+++..
T Consensus 295 ~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 295 SLIAQLPANCIILVPP 310 (328)
T ss_dssp GGGGGSCTTCEEECCG
T ss_pred HHHhhccCceEEeCCH
Confidence 3344456688888765
No 83
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.17 E-value=8e-12 Score=120.06 Aligned_cols=209 Identities=15% Similarity=0.134 Sum_probs=137.1
Q ss_pred CCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhccc
Q 006749 335 LQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSA 414 (632)
Q Consensus 335 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 414 (632)
.++|++|+++++. +.......+ ..+++|++|+++++ .++..... .+..+++|+.|+++++..+...... ....+
T Consensus 31 ~~~l~~L~l~~n~-i~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~--~~~~l 104 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVPAASF-RACRNLTILWLHSN-VLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPA--TFHGL 104 (285)
T ss_dssp CTTCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTT--TTTTC
T ss_pred CCCceEEEeeCCc-CCccCHHHc-ccCCCCCEEECCCC-ccceeCHh-hcCCccCCCEEeCCCCCCccccCHH--HhcCC
Confidence 4789999999875 554332222 45799999999986 44432211 2346799999999987534432111 11234
Q ss_pred ccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhcc
Q 006749 415 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 494 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 494 (632)
++|++|+++++.... . ....+..+++|++|++++|. +....... ...+++|++|++++ +.++..... .+..++
T Consensus 105 ~~L~~L~l~~n~l~~-~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~-n~l~~~~~~-~~~~l~ 177 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQE-L--GPGLFRGLAALQYLYLQDNA-LQALPDDT-FRDLGNLTHLFLHG-NRISSVPER-AFRGLH 177 (285)
T ss_dssp TTCCEEECTTSCCCC-C--CTTTTTTCTTCCEEECCSSC-CCCCCTTT-TTTCTTCCEEECCS-SCCCEECTT-TTTTCT
T ss_pred cCCCEEECCCCcCCE-E--CHhHhhCCcCCCEEECCCCc-ccccCHhH-hccCCCccEEECCC-CcccccCHH-HhcCcc
Confidence 899999999865332 2 12335678999999999985 33221111 23468999999998 455432211 122334
Q ss_pred CCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCCh
Q 006749 495 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD 562 (632)
Q Consensus 495 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 562 (632)
+|++|+++++ .++......+. .+++|+.|++++ +.++......+. .+++|+.|++++|++..
T Consensus 178 -~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~l~~-n~l~~~~~~~~~-~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 178 -SLDRLLLHQN-RVAHVHPHAFR--DLGRLMTLYLFA-NNLSALPTEALA-PLRALQYLRLNDNPWVC 239 (285)
T ss_dssp -TCCEEECCSS-CCCEECTTTTT--TCTTCCEEECCS-SCCSCCCHHHHT-TCTTCCEEECCSSCEEC
T ss_pred -ccCEEECCCC-cccccCHhHcc--CcccccEeeCCC-CcCCcCCHHHcc-cCcccCEEeccCCCccC
Confidence 8999999995 56554444343 488999999999 577765544444 59999999999998653
No 84
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.14 E-value=7e-13 Score=129.09 Aligned_cols=231 Identities=13% Similarity=0.043 Sum_probs=147.2
Q ss_pred CccceeecCCCCCCCh-HHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCC
Q 006749 362 LNLKQMCLRKCCFVSD-NGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSP 440 (632)
Q Consensus 362 ~~L~~L~L~~~~~l~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 440 (632)
.+++.|+++++. +.. ..+...+..+++|+.|+++++..+..... .. ...+++|++|+++++...... +..+..
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p-~~-l~~l~~L~~L~Ls~n~l~~~~---p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP-PA-IAKLTQLHYLYITHTNVSGAI---PDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCC-GG-GGGCTTCSEEEEEEECCEEEC---CGGGGG
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCC-hh-HhcCCCCCEEECcCCeeCCcC---CHHHhC
Confidence 579999998863 432 01222345689999999985333332111 11 123489999999987543222 234567
Q ss_pred CCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhc
Q 006749 441 NCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLH 520 (632)
Q Consensus 441 ~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 520 (632)
+++|++|++++|.. ...... ....+++|++|++++ +.++......+ ...+++|++|+++++ .++......+..
T Consensus 124 l~~L~~L~Ls~N~l-~~~~p~-~~~~l~~L~~L~L~~-N~l~~~~p~~l-~~l~~~L~~L~L~~N-~l~~~~~~~~~~-- 196 (313)
T 1ogq_A 124 IKTLVTLDFSYNAL-SGTLPP-SISSLPNLVGITFDG-NRISGAIPDSY-GSFSKLFTSMTISRN-RLTGKIPPTFAN-- 196 (313)
T ss_dssp CTTCCEEECCSSEE-ESCCCG-GGGGCTTCCEEECCS-SCCEEECCGGG-GCCCTTCCEEECCSS-EEEEECCGGGGG--
T ss_pred CCCCCEEeCCCCcc-CCcCCh-HHhcCCCCCeEECcC-CcccCcCCHHH-hhhhhcCcEEECcCC-eeeccCChHHhC--
Confidence 99999999999852 211111 223469999999998 45542222222 223338999999985 554333333333
Q ss_pred CCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCC
Q 006749 521 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGK 600 (632)
Q Consensus 521 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 600 (632)
++ |+.|++++ +.++......+ ..+++|+.|++++|.++..... +. .+++|++|++++|. ++...... ...++
T Consensus 197 l~-L~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~-~~--~l~~L~~L~Ls~N~-l~~~~p~~-l~~l~ 268 (313)
T 1ogq_A 197 LN-LAFVDLSR-NMLEGDASVLF-GSDKNTQKIHLAKNSLAFDLGK-VG--LSKNLNGLDLRNNR-IYGTLPQG-LTQLK 268 (313)
T ss_dssp CC-CSEEECCS-SEEEECCGGGC-CTTSCCSEEECCSSEECCBGGG-CC--CCTTCCEEECCSSC-CEECCCGG-GGGCT
T ss_pred Cc-ccEEECcC-CcccCcCCHHH-hcCCCCCEEECCCCceeeecCc-cc--ccCCCCEEECcCCc-ccCcCChH-HhcCc
Confidence 44 99999998 46654332222 4589999999999988753222 33 67899999999975 75443333 34466
Q ss_pred ccccccccccCCCC
Q 006749 601 TLVGLNLQNCNSIN 614 (632)
Q Consensus 601 ~L~~L~l~~c~~l~ 614 (632)
+|++|++++| +++
T Consensus 269 ~L~~L~Ls~N-~l~ 281 (313)
T 1ogq_A 269 FLHSLNVSFN-NLC 281 (313)
T ss_dssp TCCEEECCSS-EEE
T ss_pred CCCEEECcCC-ccc
Confidence 7999999994 444
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.12 E-value=1.6e-10 Score=112.37 Aligned_cols=257 Identities=20% Similarity=0.154 Sum_probs=137.3
Q ss_pred CCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCC----CChHHHHH--HHHhcCCCCeEecccCCCcchhhHH
Q 006749 334 GLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCF----VSDNGLVA--FSKAAGSLEILQLEECNRVSQSGIL 407 (632)
Q Consensus 334 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~----l~~~~l~~--l~~~~~~L~~L~l~~~~~~~~~~~~ 407 (632)
..++|++|+++++. + ..+ ..+. ..|+.|+++++.. +....... -...+++|++|+++++. ++.....
T Consensus 41 ~~~~L~~l~l~~n~-l-~~p-~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 113 (312)
T 1wwl_A 41 GGRSLEYLLKRVDT-E-ADL-GQFT---DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAPP 113 (312)
T ss_dssp EEEECTTHHHHCCT-T-CCC-HHHH---HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCCC
T ss_pred cCCCceeEeecccc-c-ccH-HHHH---HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhHH
Confidence 34678888887765 3 111 1222 2266666665421 12211111 11247888888888754 3221111
Q ss_pred HHHhcccccccEEeccccCCCCccccccccC--CCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCc-h
Q 006749 408 GVVSNSASKLKSLTLVKCMGIKDMATEMPML--SPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITD-V 484 (632)
Q Consensus 408 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~-~ 484 (632)
.++...+++|++|+++++.... .......+ ...++|++|++++|. +.......+ ..+++|++|+++++ .+.. .
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~ 189 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQV-RVFPALSTLDLSDN-PELGER 189 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSS-SSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTC-CCCSSCCEEECCSC-TTCHHH
T ss_pred HHHHhcCCCccEEEccCCCCcc-hhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHh-ccCCCCCEEECCCC-CcCcch
Confidence 1111334788888888754322 21110001 113788888888875 322221222 24578888888874 3332 2
Q ss_pred hhHHHH--hhccCCccEEecCCCCCCChH--HHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCC
Q 006749 485 GIFPLL--ESCKAGLVKVNLSGCLNLTDE--VVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAI 560 (632)
Q Consensus 485 ~~~~l~--~~~~~~L~~L~l~~c~~l~~~--~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i 560 (632)
++..-. ...+ +|++|+++++ .++.. ....+.. .+++|+.|++++ +.++..........+++|+.|++++|.+
T Consensus 190 ~~~~~~~~~~l~-~L~~L~L~~N-~l~~~~~~~~~~~~-~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 190 GLISALCPLKFP-TLQVLALRNA-GMETPSGVCSALAA-ARVQLQGLDLSH-NSLRDAAGAPSCDWPSQLNSLNLSFTGL 265 (312)
T ss_dssp HHHHHSCTTSCT-TCCEEECTTS-CCCCHHHHHHHHHH-TTCCCSEEECTT-SCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred HHHHHHHhccCC-CCCEEECCCC-cCcchHHHHHHHHh-cCCCCCEEECCC-CcCCcccchhhhhhcCCCCEEECCCCcc
Confidence 222111 3333 7888888885 55532 1222333 468888888887 4665533111223467888888888887
Q ss_pred ChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCccccccccccCCCCH
Q 006749 561 TDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINS 615 (632)
Q Consensus 561 ~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 615 (632)
+.. ..-. .++|++|++++|. ++.. +. ...+++|++|++++ +.+++
T Consensus 266 ~~i--p~~~---~~~L~~L~Ls~N~-l~~~--p~-~~~l~~L~~L~L~~-N~l~~ 310 (312)
T 1wwl_A 266 KQV--PKGL---PAKLSVLDLSYNR-LDRN--PS-PDELPQVGNLSLKG-NPFLD 310 (312)
T ss_dssp SSC--CSSC---CSEEEEEECCSSC-CCSC--CC-TTTSCEEEEEECTT-CTTTC
T ss_pred Chh--hhhc---cCCceEEECCCCC-CCCC--hh-HhhCCCCCEEeccC-CCCCC
Confidence 631 1111 1578888888854 6544 22 33456788888888 55553
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.09 E-value=2.8e-11 Score=115.26 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=32.7
Q ss_pred CCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCC
Q 006749 521 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 585 (632)
Q Consensus 521 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 585 (632)
+++|+.|++++| .++...... ...+++|+.|++++|+++......+. .+++|+.|++++|+
T Consensus 156 l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 156 LTNLTELDLSYN-QLQSLPEGV-FDKLTQLKDLRLYQNQLKSVPDGVFD--RLTSLQYIWLHDNP 216 (272)
T ss_dssp CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred CccCCEEECCCC-CcCccCHHH-hcCCccCCEEECCCCcCCccCHHHHh--CCcCCCEEEccCCC
Confidence 566666666663 444322211 12366666666666665543332233 55666666666654
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.06 E-value=1.5e-10 Score=112.45 Aligned_cols=65 Identities=12% Similarity=0.174 Sum_probs=34.3
Q ss_pred CCCcEEeccCCCCCCchHHHHHhh--cCCCCcEEEccCCCCcchhhHHHHH-hhhhhhcccccccccccch
Q 006749 230 PNLTSLNIESCSKIGNDGLQAIGK--FCRNLQCLSIKDCPLVRDQGISSLL-SSASSVLTRVKLQALNITD 297 (632)
Q Consensus 230 ~~L~~L~L~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~~~L~~L~L~~~~i~~ 297 (632)
..++.+.+.++ .+++..+..+.. .+++|++|+++++.- .......+. ... .+|+.|+++++.+..
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~ 131 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATG-LALSSLRLRNVSWAT 131 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCC-BCCSSCEEESCCCSS
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccC-CCCCEEEeecccccc
Confidence 45788888864 445444443322 156799998887652 211111111 111 226666777666654
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.06 E-value=1.8e-11 Score=117.43 Aligned_cols=201 Identities=17% Similarity=0.135 Sum_probs=106.5
Q ss_pred cCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCC
Q 006749 360 GCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLS 439 (632)
Q Consensus 360 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 439 (632)
.+++++++++.++ .++... .. -.++++.|+++++. ++..... ....+++|++|+++++. +..+.. ..
T Consensus 8 ~l~~l~~l~~~~~-~l~~ip-~~---~~~~l~~L~L~~N~-l~~~~~~--~~~~l~~L~~L~L~~n~-l~~~~~----~~ 74 (290)
T 1p9a_G 8 KVASHLEVNCDKR-NLTALP-PD---LPKDTTILHLSENL-LYTFSLA--TLMPYTRLTQLNLDRAE-LTKLQV----DG 74 (290)
T ss_dssp CSTTCCEEECTTS-CCSSCC-SC---CCTTCCEEECTTSC-CSEEEGG--GGTTCTTCCEEECTTSC-CCEEEC----CS
T ss_pred ccCCccEEECCCC-CCCcCC-CC---CCCCCCEEEcCCCc-CCccCHH--HhhcCCCCCEEECCCCc-cCcccC----CC
Confidence 3577888888774 332210 00 12678888888754 3322111 11223788888888754 333321 24
Q ss_pred CCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhh
Q 006749 440 PNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARL 519 (632)
Q Consensus 440 ~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 519 (632)
.+++|++|++++|. +.. +......+++|++|++++ +.++.... ..+..++ +|++|+++++ .++......+.
T Consensus 75 ~l~~L~~L~Ls~N~-l~~--l~~~~~~l~~L~~L~l~~-N~l~~l~~-~~~~~l~-~L~~L~L~~N-~l~~~~~~~~~-- 145 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQ-LQS--LPLLGQTLPALTVLDVSF-NRLTSLPL-GALRGLG-ELQELYLKGN-ELKTLPPGLLT-- 145 (290)
T ss_dssp CCTTCCEEECCSSC-CSS--CCCCTTTCTTCCEEECCS-SCCCCCCS-STTTTCT-TCCEEECTTS-CCCCCCTTTTT--
T ss_pred CCCcCCEEECCCCc-CCc--CchhhccCCCCCEEECCC-CcCcccCH-HHHcCCC-CCCEEECCCC-CCCccChhhcc--
Confidence 67788888888774 221 111223457788888876 33332110 1112222 6777777764 44433222222
Q ss_pred cCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCc
Q 006749 520 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEV 587 (632)
Q Consensus 520 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l 587 (632)
.+++|+.|++++ ++++.... .....+++|+.|+|++|+++... ..+. ..++|+.|++.+++..
T Consensus 146 ~l~~L~~L~L~~-N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip-~~~~--~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 146 PTPKLEKLSLAN-NNLTELPA-GLLNGLENLDTLLLQENSLYTIP-KGFF--GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCTTCCEEECTT-SCCSCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTT--TTCCCSEEECCSCCBC
T ss_pred cccCCCEEECCC-CcCCccCH-HHhcCcCCCCEEECCCCcCCccC-hhhc--ccccCCeEEeCCCCcc
Confidence 356777777776 45553322 12234677777777777665321 1122 3456777777776533
No 89
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=2.9e-10 Score=111.57 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=84.2
Q ss_pred HhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCC--CChH--
Q 006749 463 LGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRK--ITDA-- 538 (632)
Q Consensus 463 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~--l~~~-- 538 (632)
+...+|+|+.|.|.++..+.-..+ . . ++|++|++..| .+++..+..++...+|+|+.|+|+.+.+ ..+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~~----~-~-~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGKK----P-R-PNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCSC----B-C-TTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHhcCCCCcEEEEeCCCCceeccc----c-C-CCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 334456666666665422211111 1 2 26777777654 4666666655532467777776642110 1111
Q ss_pred -HHHHHH--hcCCCcCeEeccCCCCChhHHHhhhh-hccCCccEEeccCCCCcCcchHHHHH---HhCCccccccccccC
Q 006749 539 -SLVAIG--NNCMFLSYLDVSKCAITDMGISALSH-AEQLNLQVLSLSSCSEVSNKSMPALK---KLGKTLVGLNLQNCN 611 (632)
Q Consensus 539 -~~~~l~--~~~~~L~~L~L~~~~i~~~~~~~l~~-~~~~~L~~L~l~~c~~l~~~~~~~~~---~~~~~L~~L~l~~c~ 611 (632)
.+..+. ..+|+|+.|+|.+|.+++.+...+.. ..+|+|++|+|+.| .+++.+...+. ..+++|+.|++++|
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n- 317 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN- 317 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB-
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC-
Confidence 111111 23677777777777776655444442 14667777777653 46665544433 22456777777764
Q ss_pred CCCHHHHHHHHhcc-cccc
Q 006749 612 SINSSTVARLVESL-WRCD 629 (632)
Q Consensus 612 ~l~~~~~~~l~~~l-~~~~ 629 (632)
.+++.+++.+.+.+ ..||
T Consensus 318 ~i~d~~~~~l~~alg~~~~ 336 (362)
T 2ra8_A 318 YLSDEMKKELQKSLPMKID 336 (362)
T ss_dssp BCCHHHHHHHHHHCCSEEE
T ss_pred cCCHHHHHHHHHHcCCEEE
Confidence 57777777777644 4444
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.04 E-value=1.9e-10 Score=103.57 Aligned_cols=147 Identities=18% Similarity=0.172 Sum_probs=68.2
Q ss_pred ccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhcc
Q 006749 415 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 494 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 494 (632)
++|++|+++++. +.++. .+..+++|++|++++|. +.... . ...+++|++|++++ +.+++.....+ ..++
T Consensus 44 ~~L~~L~l~~n~-i~~l~----~l~~l~~L~~L~l~~n~-~~~~~--~-l~~l~~L~~L~l~~-n~l~~~~~~~l-~~l~ 112 (197)
T 4ezg_A 44 NSLTYITLANIN-VTDLT----GIEYAHNIKDLTINNIH-ATNYN--P-ISGLSNLERLRIMG-KDVTSDKIPNL-SGLT 112 (197)
T ss_dssp HTCCEEEEESSC-CSCCT----TGGGCTTCSEEEEESCC-CSCCG--G-GTTCTTCCEEEEEC-TTCBGGGSCCC-TTCT
T ss_pred CCccEEeccCCC-ccChH----HHhcCCCCCEEEccCCC-CCcch--h-hhcCCCCCEEEeEC-CccCcccChhh-cCCC
Confidence 788888888753 33321 24556777777777763 32221 1 22346677777766 34433222211 1222
Q ss_pred CCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccC
Q 006749 495 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQL 574 (632)
Q Consensus 495 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 574 (632)
+|++|++++| .+++..+..+.. +++|+.|++++|..+++.. . ...+++|+.|++++|.+++.. .+. .++
T Consensus 113 -~L~~L~Ls~n-~i~~~~~~~l~~--l~~L~~L~L~~n~~i~~~~--~-l~~l~~L~~L~l~~n~i~~~~--~l~--~l~ 181 (197)
T 4ezg_A 113 -SLTLLDISHS-AHDDSILTKINT--LPKVNSIDLSYNGAITDIM--P-LKTLPELKSLNIQFDGVHDYR--GIE--DFP 181 (197)
T ss_dssp -TCCEEECCSS-BCBGGGHHHHTT--CSSCCEEECCSCTBCCCCG--G-GGGCSSCCEEECTTBCCCCCT--TGG--GCS
T ss_pred -CCCEEEecCC-ccCcHhHHHHhh--CCCCCEEEccCCCCccccH--h-hcCCCCCCEEECCCCCCcChH--Hhc--cCC
Confidence 4555555542 343333333322 4555555555432233321 1 223445555555555444321 222 344
Q ss_pred CccEEeccC
Q 006749 575 NLQVLSLSS 583 (632)
Q Consensus 575 ~L~~L~l~~ 583 (632)
+|++|++++
T Consensus 182 ~L~~L~l~~ 190 (197)
T 4ezg_A 182 KLNQLYAFS 190 (197)
T ss_dssp SCCEEEECB
T ss_pred CCCEEEeeC
Confidence 455555444
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.02 E-value=6.2e-11 Score=112.81 Aligned_cols=134 Identities=14% Similarity=0.078 Sum_probs=83.3
Q ss_pred CCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhc
Q 006749 467 CPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNN 546 (632)
Q Consensus 467 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 546 (632)
+++|++|+++++ .++.... ..+..++ +|++|++++| .++......+. .+++|+.|++++| .++..... ....
T Consensus 84 l~~L~~L~L~~n-~l~~~~~-~~~~~l~-~L~~L~L~~n-~l~~~~~~~~~--~l~~L~~L~L~~n-~l~~~~~~-~~~~ 155 (272)
T 3rfs_A 84 LTNLTYLILTGN-QLQSLPN-GVFDKLT-NLKELVLVEN-QLQSLPDGVFD--KLTNLTYLNLAHN-QLQSLPKG-VFDK 155 (272)
T ss_dssp CTTCCEEECTTS-CCCCCCT-TTTTTCT-TCCEEECTTS-CCCCCCTTTTT--TCTTCCEEECCSS-CCCCCCTT-TTTT
T ss_pred CCCCCEEECCCC-ccCccCh-hHhcCCc-CCCEEECCCC-cCCccCHHHhc--cCCCCCEEECCCC-ccCccCHH-Hhcc
Confidence 456666666552 3321110 1112223 6777777764 44433222222 4789999999984 66643322 2245
Q ss_pred CCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCccccccccccCC
Q 006749 547 CMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNS 612 (632)
Q Consensus 547 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 612 (632)
+++|+.|++++|+++......+. .+++|++|++++|. ++.... .....+++|+.|++++|+-
T Consensus 156 l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 156 LTNLTELDLSYNQLQSLPEGVFD--KLTQLKDLRLYQNQ-LKSVPD-GVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSSCB
T ss_pred CccCCEEECCCCCcCccCHHHhc--CCccCCEEECCCCc-CCccCH-HHHhCCcCCCEEEccCCCc
Confidence 89999999999998865444344 78899999999975 764333 2234567899999998543
No 92
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.99 E-value=2.4e-10 Score=77.13 Aligned_cols=40 Identities=35% Similarity=0.390 Sum_probs=34.7
Q ss_pred CCCCcCCCChHHHHHHHccCCCccchhhHHHHHHHHHHHHh
Q 006749 46 NQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLT 86 (632)
Q Consensus 46 ~~~~~~~LP~Eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~ 86 (632)
....+..||+||+.+||+||+ .+|+.++++|||+|++++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhC
Confidence 456789999999999999999 9999999999999999874
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.99 E-value=1.9e-09 Score=103.37 Aligned_cols=171 Identities=23% Similarity=0.198 Sum_probs=111.1
Q ss_pred hcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhh
Q 006749 386 AAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGK 465 (632)
Q Consensus 386 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~ 465 (632)
.+++|+.|+++++. +..... + ..+++|++|++++|.. ..+. .+..+++|+.|++++|. ++.. .. ..
T Consensus 44 ~l~~L~~L~l~~~~-i~~~~~---~-~~l~~L~~L~L~~n~l-~~~~----~l~~l~~L~~L~l~~n~-l~~~--~~-l~ 109 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSVQG---I-QYLPNVTKLFLNGNKL-TDIK----PLANLKNLGWLFLDENK-VKDL--SS-LK 109 (291)
T ss_dssp HHHTCCEEECTTSC-CCCCTT---G-GGCTTCCEEECCSSCC-CCCG----GGTTCTTCCEEECCSSC-CCCG--GG-GT
T ss_pred hcCcccEEEccCCC-cccChh---H-hcCCCCCEEEccCCcc-CCCc----ccccCCCCCEEECCCCc-CCCC--hh-hc
Confidence 35789999998865 332211 1 2248899999988643 3331 15678899999999886 3321 12 34
Q ss_pred cCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHh
Q 006749 466 LCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGN 545 (632)
Q Consensus 466 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 545 (632)
.+++|++|++++ +.+++. ..+..++ +|+.|++++| .++.. ..+. .+++|+.|++++ +.+++... ..
T Consensus 110 ~l~~L~~L~L~~-n~i~~~---~~l~~l~-~L~~L~l~~n-~l~~~--~~l~--~l~~L~~L~L~~-N~l~~~~~---l~ 175 (291)
T 1h6t_A 110 DLKKLKSLSLEH-NGISDI---NGLVHLP-QLESLYLGNN-KITDI--TVLS--RLTKLDTLSLED-NQISDIVP---LA 175 (291)
T ss_dssp TCTTCCEEECTT-SCCCCC---GGGGGCT-TCCEEECCSS-CCCCC--GGGG--GCTTCSEEECCS-SCCCCCGG---GT
T ss_pred cCCCCCEEECCC-CcCCCC---hhhcCCC-CCCEEEccCC-cCCcc--hhhc--cCCCCCEEEccC-Cccccchh---hc
Confidence 568899999988 344432 1123344 7888888885 55543 2222 478888888888 46665432 34
Q ss_pred cCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCc
Q 006749 546 NCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSN 589 (632)
Q Consensus 546 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~ 589 (632)
.+++|+.|++++|.+++.. .+. .+++|+.|++++|+ ++.
T Consensus 176 ~l~~L~~L~L~~N~i~~l~--~l~--~l~~L~~L~l~~n~-i~~ 214 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDLR--ALA--GLKNLDVLELFSQE-CLN 214 (291)
T ss_dssp TCTTCCEEECCSSCCCBCG--GGT--TCTTCSEEEEEEEE-EEC
T ss_pred CCCccCEEECCCCcCCCCh--hhc--cCCCCCEEECcCCc-ccC
Confidence 5888888888888877642 344 67888888888865 543
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.99 E-value=8.9e-10 Score=99.08 Aligned_cols=101 Identities=21% Similarity=0.210 Sum_probs=42.8
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCC-CChhHHHhhhhhccC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCA-ITDMGISALSHAEQL 574 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~ 574 (632)
+|++|+++++ .+++..+..+. .+++|+.|++++ +.+++.....+. .+++|++|++++|. +++.. .+. .++
T Consensus 89 ~L~~L~l~~n-~l~~~~~~~l~--~l~~L~~L~Ls~-n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~--~l~--~l~ 159 (197)
T 4ezg_A 89 NLERLRIMGK-DVTSDKIPNLS--GLTSLTLLDISH-SAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM--PLK--TLP 159 (197)
T ss_dssp TCCEEEEECT-TCBGGGSCCCT--TCTTCCEEECCS-SBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG--GGG--GCS
T ss_pred CCCEEEeECC-ccCcccChhhc--CCCCCCEEEecC-CccCcHhHHHHh-hCCCCCEEEccCCCCccccH--hhc--CCC
Confidence 4555555542 33332222222 245555555554 344443333333 25555555555554 43321 222 444
Q ss_pred CccEEeccCCCCcCcchHHHHHHhCCccccccccc
Q 006749 575 NLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQN 609 (632)
Q Consensus 575 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 609 (632)
+|++|++++|. +++.. . ...+++|++|++++
T Consensus 160 ~L~~L~l~~n~-i~~~~--~-l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 160 ELKSLNIQFDG-VHDYR--G-IEDFPKLNQLYAFS 190 (197)
T ss_dssp SCCEEECTTBC-CCCCT--T-GGGCSSCCEEEECB
T ss_pred CCCEEECCCCC-CcChH--H-hccCCCCCEEEeeC
Confidence 55555555543 43321 1 12234455555554
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.97 E-value=1.8e-09 Score=103.52 Aligned_cols=173 Identities=21% Similarity=0.166 Sum_probs=118.7
Q ss_pred CCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCC
Q 006749 361 CLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSP 440 (632)
Q Consensus 361 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 440 (632)
+++|+.|+++++. +... .. ...+++|+.|+++++. ++.... ...+++|++|+++++. +..+ ..+..
T Consensus 45 l~~L~~L~l~~~~-i~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~----l~~l~~L~~L~l~~n~-l~~~----~~l~~ 110 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLNGNK-LTDIKP----LANLKNLGWLFLDENK-VKDL----SSLKD 110 (291)
T ss_dssp HHTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECCSSC-CCCCGG----GTTCTTCCEEECCSSC-CCCG----GGGTT
T ss_pred cCcccEEEccCCC-cccC--hh-HhcCCCCCEEEccCCc-cCCCcc----cccCCCCCEEECCCCc-CCCC----hhhcc
Confidence 3889999998864 3332 12 3468999999999865 333221 2334899999999865 3333 33678
Q ss_pred CCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhc
Q 006749 441 NCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLH 520 (632)
Q Consensus 441 ~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 520 (632)
+++|++|++++|. +... .. ...+++|++|++++ +.+++. ..+..++ +|+.|++++| .+++... +. .
T Consensus 111 l~~L~~L~L~~n~-i~~~--~~-l~~l~~L~~L~l~~-n~l~~~---~~l~~l~-~L~~L~L~~N-~l~~~~~--l~--~ 176 (291)
T 1h6t_A 111 LKKLKSLSLEHNG-ISDI--NG-LVHLPQLESLYLGN-NKITDI---TVLSRLT-KLDTLSLEDN-QISDIVP--LA--G 176 (291)
T ss_dssp CTTCCEEECTTSC-CCCC--GG-GGGCTTCCEEECCS-SCCCCC---GGGGGCT-TCSEEECCSS-CCCCCGG--GT--T
T ss_pred CCCCCEEECCCCc-CCCC--hh-hcCCCCCCEEEccC-CcCCcc---hhhccCC-CCCEEEccCC-ccccchh--hc--C
Confidence 8999999999986 3332 22 33569999999998 455432 2233444 8999999986 5555432 33 5
Q ss_pred CCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHH
Q 006749 521 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGI 565 (632)
Q Consensus 521 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 565 (632)
+++|+.|++++ +.+++.. . ...+++|+.|++++|+++..+.
T Consensus 177 l~~L~~L~L~~-N~i~~l~--~-l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 177 LTKLQNLYLSK-NHISDLR--A-LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CTTCCEEECCS-SCCCBCG--G-GTTCTTCSEEEEEEEEEECCCE
T ss_pred CCccCEEECCC-CcCCCCh--h-hccCCCCCEEECcCCcccCCcc
Confidence 89999999998 5777643 2 3458999999999998766443
No 96
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.96 E-value=1.9e-10 Score=109.35 Aligned_cols=180 Identities=14% Similarity=0.113 Sum_probs=107.7
Q ss_pred CCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcC
Q 006749 388 GSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLC 467 (632)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~ 467 (632)
++|+.|+++++. ++.... .....+++|++|+++++. +..+ ....+..+++|++|++++|. +..... .....+
T Consensus 37 ~~l~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~n~-l~~i--~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l 108 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPS--KAFHRLTKLRLLYLNDNK-LQTL--PAGIFKELKNLETLWVTDNK-LQALPI-GVFDQL 108 (270)
T ss_dssp TTCSEEECCSSC-CSCCCT--TSSSSCTTCCEEECCSSC-CSCC--CTTTTSSCTTCCEEECCSSC-CCCCCT-TTTTTC
T ss_pred CCCCEEECcCCC-CCeeCH--HHhcCCCCCCEEECCCCc-cCee--ChhhhcCCCCCCEEECCCCc-CCcCCH-hHcccc
Confidence 578999998754 332211 011234889999998854 3322 12224568889999998875 322111 122346
Q ss_pred CCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcC
Q 006749 468 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 547 (632)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 547 (632)
++|++|++++ +.++..... .+..++ +|++|+++++ .++......+. .+++|+.|++++ +.++......+ ..+
T Consensus 109 ~~L~~L~l~~-n~l~~~~~~-~~~~l~-~L~~L~Ls~n-~l~~~~~~~~~--~l~~L~~L~L~~-n~l~~~~~~~~-~~l 180 (270)
T 2o6q_A 109 VNLAELRLDR-NQLKSLPPR-VFDSLT-KLTYLSLGYN-ELQSLPKGVFD--KLTSLKELRLYN-NQLKRVPEGAF-DKL 180 (270)
T ss_dssp SSCCEEECCS-SCCCCCCTT-TTTTCT-TCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCS-SCCSCCCTTTT-TTC
T ss_pred cCCCEEECCC-CccCeeCHH-HhCcCc-CCCEEECCCC-cCCccCHhHcc--CCcccceeEecC-CcCcEeChhHh-ccC
Confidence 8889998887 344322111 122333 7888888885 45443322222 478888888887 46654332222 347
Q ss_pred CCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCC
Q 006749 548 MFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 585 (632)
Q Consensus 548 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 585 (632)
++|+.|+|++|.++......+. .+++|+.|++++|+
T Consensus 181 ~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 181 TELKTLKLDNNQLKRVPEGAFD--SLEKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred CCcCEEECCCCcCCcCCHHHhc--cccCCCEEEecCCC
Confidence 8888888888887754433333 67788888888866
No 97
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=1.7e-08 Score=99.12 Aligned_cols=146 Identities=16% Similarity=0.135 Sum_probs=86.5
Q ss_pred cccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhh-cCCCCcEEEeccccC--CCchhh---H
Q 006749 414 ASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGK-LCPQLQHVDLSGLYG--ITDVGI---F 487 (632)
Q Consensus 414 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~--l~~~~~---~ 487 (632)
+|+|+.|.++++.... . ..+ ..++|++|++..|. ++...+..++. .+|+|++|+|+.+.+ ..+.++ .
T Consensus 171 ~P~L~~L~L~g~~~l~---l--~~~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLS---I--GKK-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp CTTCCEEEEECCBTCB---C--CSC-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred CCCCcEEEEeCCCCce---e--ccc-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3778888887653221 1 112 37899999998764 77777777764 579999999863211 112122 2
Q ss_pred HHHh--hccCCccEEecCCCCCCChHHHHHHHhh-cCCCCCeeeccCCCCCChHHHHHHHh---cCCCcCeEeccCCCCC
Q 006749 488 PLLE--SCKAGLVKVNLSGCLNLTDEVVLALARL-HSETLELLNLDGCRKITDASLVAIGN---NCMFLSYLDVSKCAIT 561 (632)
Q Consensus 488 ~l~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~~-~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~L~~~~i~ 561 (632)
..+. .+| +|++|.+.+| .+.+.....++.. .+++|++|+|+. +.+++.+...+.. .+++|+.|+|++|.++
T Consensus 244 ~~l~~~~~p-~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 244 PLFSKDRFP-NLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGSCTTTCT-TCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHhcCCCC-CcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2221 233 6777777664 4444443333321 245677777765 5666666555542 3566777777777777
Q ss_pred hhHHHhhh
Q 006749 562 DMGISALS 569 (632)
Q Consensus 562 ~~~~~~l~ 569 (632)
+.++..+.
T Consensus 321 d~~~~~l~ 328 (362)
T 2ra8_A 321 DEMKKELQ 328 (362)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666666
No 98
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.93 E-value=1.6e-10 Score=110.33 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=55.5
Q ss_pred CCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChH---HHHHHHhhcCCCCC-eeeccCCCCCChHHHHH
Q 006749 467 CPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDE---VVLALARLHSETLE-LLNLDGCRKITDASLVA 542 (632)
Q Consensus 467 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~---~~~~l~~~~~~~L~-~L~l~~c~~l~~~~~~~ 542 (632)
+++|++|++++ +.++...+...+..++ +|++|+++++ .++.. .+..+.. ++.|. .|++++ +.++......
T Consensus 123 l~~L~~L~l~~-n~l~~~~l~~~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~~l~~--L~~l~l~L~ls~-n~l~~~~~~~ 196 (276)
T 2z62_A 123 LKTLKELNVAH-NLIQSFKLPEYFSNLT-NLEHLDLSSN-KIQSIYCTDLRVLHQ--MPLLNLSLDLSL-NPMNFIQPGA 196 (276)
T ss_dssp CTTCCEEECCS-SCCCCCCCCGGGGGCT-TCCEEECCSS-CCCEECGGGGHHHHT--CTTCCEEEECCS-SCCCEECTTS
T ss_pred CCCCCEEECcC-CccceecCchhhccCC-CCCEEECCCC-CCCcCCHHHhhhhhh--ccccceeeecCC-CcccccCccc
Confidence 45666666655 3333222222222333 6666666664 33332 2222221 33333 677776 4555432211
Q ss_pred HHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCC
Q 006749 543 IGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 585 (632)
Q Consensus 543 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 585 (632)
+ ...+|+.|++++|.++......+. .+++|+.|++++++
T Consensus 197 ~--~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 197 F--KEIRLKELALDTNQLKSVPDGIFD--RLTSLQKIWLHTNP 235 (276)
T ss_dssp S--CSCCEEEEECCSSCCSCCCTTTTT--TCCSCCEEECCSSC
T ss_pred c--CCCcccEEECCCCceeecCHhHhc--ccccccEEEccCCc
Confidence 1 234788888888877654333333 67788888888755
No 99
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.90 E-value=7.4e-11 Score=109.96 Aligned_cols=205 Identities=14% Similarity=-0.024 Sum_probs=93.0
Q ss_pred CccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCC
Q 006749 362 LNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPN 441 (632)
Q Consensus 362 ~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 441 (632)
++|++|+++++ .++.... ..+..+++|+.|+++++..++..... ....+++|++|++++|+.+..+.. ..+..+
T Consensus 31 ~~l~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~--~f~~l~~L~~L~l~~~n~l~~i~~--~~f~~l 104 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESH--SFYNLSKVTHIEIRNTRNLTYIDP--DALKEL 104 (239)
T ss_dssp TTCCEEEEESC-CCSEECT-TTTTTCTTCCEEEEECCSSCCEECTT--TEESCTTCCEEEEEEETTCCEECT--TSEECC
T ss_pred CcccEEEEeCC-cceEECH-HHccCCCCCcEEeCCCCCCcceeCHh--HcCCCcCCcEEECCCCCCeeEcCH--HHhCCC
Confidence 47888888775 3332111 11234566777777665323221100 011235666666665444443321 122345
Q ss_pred CCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcC
Q 006749 442 CSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHS 521 (632)
Q Consensus 442 ~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 521 (632)
++|++|++++|.. +. +.. ...+++|+ .|+.|+++++..++......+. .+
T Consensus 105 ~~L~~L~l~~n~l-~~--lp~-~~~l~~L~------------------------~L~~L~l~~N~~l~~i~~~~~~--~l 154 (239)
T 2xwt_C 105 PLLKFLGIFNTGL-KM--FPD-LTKVYSTD------------------------IFFILEITDNPYMTSIPVNAFQ--GL 154 (239)
T ss_dssp TTCCEEEEEEECC-CS--CCC-CTTCCBCC------------------------SEEEEEEESCTTCCEECTTTTT--TT
T ss_pred CCCCEEeCCCCCC-cc--ccc-cccccccc------------------------cccEEECCCCcchhhcCccccc--ch
Confidence 5555555555431 11 000 11223333 0115555543233322221122 35
Q ss_pred CCCC-eeeccCCCCCChHHHHHHHhcCCCcCeEeccCCC-CChhHHHhhhhhcc-CCccEEeccCCCCcCcchHHHHHHh
Q 006749 522 ETLE-LLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCA-ITDMGISALSHAEQ-LNLQVLSLSSCSEVSNKSMPALKKL 598 (632)
Q Consensus 522 ~~L~-~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~ 598 (632)
++|+ .|++++ +.++...... .. .++|++|++++|+ ++......+. .+ ++|+.|+++++. ++..... .
T Consensus 155 ~~L~~~L~l~~-n~l~~i~~~~-~~-~~~L~~L~L~~n~~l~~i~~~~~~--~l~~~L~~L~l~~N~-l~~l~~~----~ 224 (239)
T 2xwt_C 155 CNETLTLKLYN-NGFTSVQGYA-FN-GTKLDAVYLNKNKYLTVIDKDAFG--GVYSGPSLLDVSQTS-VTALPSK----G 224 (239)
T ss_dssp BSSEEEEECCS-CCCCEECTTT-TT-TCEEEEEECTTCTTCCEECTTTTT--TCSBCCSEEECTTCC-CCCCCCT----T
T ss_pred hcceeEEEcCC-CCCcccCHhh-cC-CCCCCEEEcCCCCCcccCCHHHhh--ccccCCcEEECCCCc-cccCChh----H
Confidence 6666 666666 3554322211 12 2567777777773 6543333333 45 677777777743 5432211 3
Q ss_pred CCccccccccccCC
Q 006749 599 GKTLVGLNLQNCNS 612 (632)
Q Consensus 599 ~~~L~~L~l~~c~~ 612 (632)
+++|+.|+++++..
T Consensus 225 ~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 225 LEHLKELIARNTWT 238 (239)
T ss_dssp CTTCSEEECTTC--
T ss_pred hccCceeeccCccC
Confidence 45677777776543
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.89 E-value=3e-09 Score=112.34 Aligned_cols=172 Identities=23% Similarity=0.203 Sum_probs=116.9
Q ss_pred hcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhh
Q 006749 386 AAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGK 465 (632)
Q Consensus 386 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~ 465 (632)
.+++|+.|+++++. +.... . ...+++|+.|+|++|. +..+. .+..+++|+.|++++|. +... .. ..
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~---~-l~~l~~L~~L~Ls~N~-l~~~~----~l~~l~~L~~L~Ls~N~-l~~l--~~-l~ 106 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQ---G-IQYLPNVTKLFLNGNK-LTDIK----PLTNLKNLGWLFLDENK-IKDL--SS-LK 106 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCT---T-GGGCTTCCEEECTTSC-CCCCG----GGGGCTTCCEEECCSSC-CCCC--TT-ST
T ss_pred cCCCCCEEECcCCC-CCCCh---H-HccCCCCCEEEeeCCC-CCCCh----hhccCCCCCEEECcCCC-CCCC--hh-hc
Confidence 46899999998865 33322 1 1234899999999865 33331 15688999999999985 3321 12 33
Q ss_pred cCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHh
Q 006749 466 LCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGN 545 (632)
Q Consensus 466 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 545 (632)
.+++|++|+|+++ .+.+. . -+..++ +|+.|+|++| .++.. ..+. .+++|+.|+|++| .+.+... ..
T Consensus 107 ~l~~L~~L~Ls~N-~l~~l--~-~l~~l~-~L~~L~Ls~N-~l~~l--~~l~--~l~~L~~L~Ls~N-~l~~~~~---l~ 172 (605)
T 1m9s_A 107 DLKKLKSLSLEHN-GISDI--N-GLVHLP-QLESLYLGNN-KITDI--TVLS--RLTKLDTLSLEDN-QISDIVP---LA 172 (605)
T ss_dssp TCTTCCEEECTTS-CCCCC--G-GGGGCT-TCSEEECCSS-CCCCC--GGGG--SCTTCSEEECCSS-CCCCCGG---GT
T ss_pred cCCCCCEEEecCC-CCCCC--c-cccCCC-ccCEEECCCC-ccCCc--hhhc--ccCCCCEEECcCC-cCCCchh---hc
Confidence 5689999999884 44431 1 133444 8999999886 55543 2233 5889999999984 6665433 44
Q ss_pred cCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcc
Q 006749 546 NCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNK 590 (632)
Q Consensus 546 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~ 590 (632)
.+++|+.|+|++|.+++. ..+. .+++|+.|+|++|+ ++..
T Consensus 173 ~l~~L~~L~Ls~N~i~~l--~~l~--~l~~L~~L~L~~N~-l~~~ 212 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDL--RALA--GLKNLDVLELFSQE-CLNK 212 (605)
T ss_dssp TCTTCCEEECCSSCCCBC--GGGT--TCTTCSEEECCSEE-EECC
T ss_pred cCCCCCEEECcCCCCCCC--hHHc--cCCCCCEEEccCCc-CcCC
Confidence 589999999999988764 3344 78899999999876 5433
No 101
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.89 E-value=2.9e-08 Score=87.78 Aligned_cols=126 Identities=19% Similarity=0.238 Sum_probs=68.3
Q ss_pred HHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhcc--CCccEEecCCCCCCChHHHHHHHhh--cCCCCCeeeccCCC
Q 006749 458 ASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK--AGLVKVNLSGCLNLTDEVVLALARL--HSETLELLNLDGCR 533 (632)
Q Consensus 458 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~--~~L~~L~l~~c~~l~~~~~~~l~~~--~~~~L~~L~l~~c~ 533 (632)
..+..+....++|++|+++++..++++++..+..... ++|++|+|++| .+.+.+...++.. ..++|++|+|++ +
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~-N 103 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES-N 103 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS-S
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC-C
Confidence 3445555556777777777643677766665544321 25666666663 4555554444321 235566666665 4
Q ss_pred CCChHHHHHHHh---cCCCcCeEec--cCCCCChhHHHhhhh--hccCCccEEeccCCC
Q 006749 534 KITDASLVAIGN---NCMFLSYLDV--SKCAITDMGISALSH--AEQLNLQVLSLSSCS 585 (632)
Q Consensus 534 ~l~~~~~~~l~~---~~~~L~~L~L--~~~~i~~~~~~~l~~--~~~~~L~~L~l~~c~ 585 (632)
.+++.+...+.. ..++|++|+| ++|.+++.+...+.. ...++|++|++++|.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 566655555442 3445666666 556666655444441 134555566655543
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.87 E-value=3.9e-09 Score=111.46 Aligned_cols=173 Identities=21% Similarity=0.153 Sum_probs=121.9
Q ss_pred CccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCC
Q 006749 362 LNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPN 441 (632)
Q Consensus 362 ~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 441 (632)
++|+.|.++++. +... .. +..+++|+.|+|+++. +..... ...+++|+.|++++|. +..+ +.+..+
T Consensus 43 ~~L~~L~l~~n~-i~~l--~~-l~~l~~L~~L~Ls~N~-l~~~~~----l~~l~~L~~L~Ls~N~-l~~l----~~l~~l 108 (605)
T 1m9s_A 43 NSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLNGNK-LTDIKP----LTNLKNLGWLFLDENK-IKDL----SSLKDL 108 (605)
T ss_dssp TTCCCCBCTTCC-CCCC--TT-GGGCTTCCEEECTTSC-CCCCGG----GGGCTTCCEEECCSSC-CCCC----TTSTTC
T ss_pred CCCCEEECcCCC-CCCC--hH-HccCCCCCEEEeeCCC-CCCChh----hccCCCCCEEECcCCC-CCCC----hhhccC
Confidence 889999998864 3332 12 3468999999999875 333221 2345999999999975 3333 356789
Q ss_pred CCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcC
Q 006749 442 CSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHS 521 (632)
Q Consensus 442 ~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 521 (632)
++|+.|++++|..-. . .. ...+++|+.|+|++ +.+++. ..+..++ +|+.|+|++| .+.+... +. .+
T Consensus 109 ~~L~~L~Ls~N~l~~-l--~~-l~~l~~L~~L~Ls~-N~l~~l---~~l~~l~-~L~~L~Ls~N-~l~~~~~--l~--~l 174 (605)
T 1m9s_A 109 KKLKSLSLEHNGISD-I--NG-LVHLPQLESLYLGN-NKITDI---TVLSRLT-KLDTLSLEDN-QISDIVP--LA--GL 174 (605)
T ss_dssp TTCCEEECTTSCCCC-C--GG-GGGCTTCSEEECCS-SCCCCC---GGGGSCT-TCSEEECCSS-CCCCCGG--GT--TC
T ss_pred CCCCEEEecCCCCCC-C--cc-ccCCCccCEEECCC-CccCCc---hhhcccC-CCCEEECcCC-cCCCchh--hc--cC
Confidence 999999999986332 1 22 34579999999998 455442 2334444 9999999996 5554333 33 58
Q ss_pred CCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHH
Q 006749 522 ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGIS 566 (632)
Q Consensus 522 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~ 566 (632)
++|+.|+|++ +.+++.. . ...+++|+.|+|++|++....+.
T Consensus 175 ~~L~~L~Ls~-N~i~~l~--~-l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 175 TKLQNLYLSK-NHISDLR--A-LAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp TTCCEEECCS-SCCCBCG--G-GTTCTTCSEEECCSEEEECCCCC
T ss_pred CCCCEEECcC-CCCCCCh--H-HccCCCCCEEEccCCcCcCCccc
Confidence 9999999999 4777642 2 34599999999999987765443
No 103
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.87 E-value=1.1e-09 Score=103.98 Aligned_cols=182 Identities=13% Similarity=0.116 Sum_probs=106.2
Q ss_pred CccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCC
Q 006749 362 LNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPN 441 (632)
Q Consensus 362 ~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 441 (632)
+++++|+++++. +.... ...+..+++|++|+++++. ++... ......+++|++|+++++. +..+. ...+..+
T Consensus 37 ~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~i~--~~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l 108 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLP-SKAFHRLTKLRLLYLNDNK-LQTLP--AGIFKELKNLETLWVTDNK-LQALP--IGVFDQL 108 (270)
T ss_dssp TTCSEEECCSSC-CSCCC-TTSSSSCTTCCEEECCSSC-CSCCC--TTTTSSCTTCCEEECCSSC-CCCCC--TTTTTTC
T ss_pred CCCCEEECcCCC-CCeeC-HHHhcCCCCCCEEECCCCc-cCeeC--hhhhcCCCCCCEEECCCCc-CCcCC--HhHcccc
Confidence 578888888753 33221 1122357888899888754 33211 1111234788899888854 33221 2234567
Q ss_pred CCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcC
Q 006749 442 CSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHS 521 (632)
Q Consensus 442 ~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 521 (632)
++|++|++++|. ++..... ....+++|++|++++ +.++.... ..+..++ +|++|+++++ .++......+. .+
T Consensus 109 ~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~-n~l~~~~~-~~~~~l~-~L~~L~L~~n-~l~~~~~~~~~--~l 180 (270)
T 2o6q_A 109 VNLAELRLDRNQ-LKSLPPR-VFDSLTKLTYLSLGY-NELQSLPK-GVFDKLT-SLKELRLYNN-QLKRVPEGAFD--KL 180 (270)
T ss_dssp SSCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCS-SCCCCCCT-TTTTTCT-TCCEEECCSS-CCSCCCTTTTT--TC
T ss_pred cCCCEEECCCCc-cCeeCHH-HhCcCcCCCEEECCC-CcCCccCH-hHccCCc-ccceeEecCC-cCcEeChhHhc--cC
Confidence 889999988875 2221111 123468899999987 34432211 1122333 8899998885 45443322222 47
Q ss_pred CCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCC
Q 006749 522 ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAIT 561 (632)
Q Consensus 522 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~ 561 (632)
++|+.|++++ +.++......+ ..+++|+.|+|++|++.
T Consensus 181 ~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 181 TELKTLKLDN-NQLKRVPEGAF-DSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTCCEEECCS-SCCSCCCTTTT-TTCTTCCEEECCSSCBC
T ss_pred CCcCEEECCC-CcCCcCCHHHh-ccccCCCEEEecCCCee
Confidence 8889999988 46654332222 34788899999888753
No 104
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.87 E-value=3e-10 Score=108.46 Aligned_cols=159 Identities=18% Similarity=0.194 Sum_probs=94.3
Q ss_pred CCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHH-HHHH
Q 006749 438 LSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEV-VLAL 516 (632)
Q Consensus 438 ~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~-~~~l 516 (632)
+..+++|++|++++|. ++......+ ..+++|++|+++++ .+....... +..++ +|++|+++++ .+.... ...+
T Consensus 72 ~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~-~L~~L~l~~n-~l~~~~l~~~~ 145 (276)
T 2z62_A 72 YQSLSHLSTLILTGNP-IQSLALGAF-SGLSSLQKLVAVET-NLASLENFP-IGHLK-TLKELNVAHN-LIQSFKLPEYF 145 (276)
T ss_dssp TTTCTTCCEEECTTCC-CCEECTTTT-TTCTTCCEEECTTS-CCCCSTTCC-CTTCT-TCCEEECCSS-CCCCCCCCGGG
T ss_pred ccCCcCCCEEECCCCc-cCccChhhh-cCCccccEEECCCC-CccccCchh-cccCC-CCCEEECcCC-ccceecCchhh
Confidence 3456666666666654 221111111 23577777777763 332211101 22333 8999999985 554422 2223
Q ss_pred HhhcCCCCCeeeccCCCCCChHH---HHHHHhcCCCcC-eEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchH
Q 006749 517 ARLHSETLELLNLDGCRKITDAS---LVAIGNNCMFLS-YLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSM 592 (632)
Q Consensus 517 ~~~~~~~L~~L~l~~c~~l~~~~---~~~l~~~~~~L~-~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~ 592 (632)
. .+++|+.|++++ +.++... +..+. .++.|. .|++++|.++......+ ...+|+.|++++|. ++....
T Consensus 146 ~--~l~~L~~L~Ls~-N~l~~~~~~~~~~l~-~L~~l~l~L~ls~n~l~~~~~~~~---~~~~L~~L~L~~n~-l~~~~~ 217 (276)
T 2z62_A 146 S--NLTNLEHLDLSS-NKIQSIYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAF---KEIRLKELALDTNQ-LKSVPD 217 (276)
T ss_dssp G--GCTTCCEEECCS-SCCCEECGGGGHHHH-TCTTCCEEEECCSSCCCEECTTSS---CSCCEEEEECCSSC-CSCCCT
T ss_pred c--cCCCCCEEECCC-CCCCcCCHHHhhhhh-hccccceeeecCCCcccccCcccc---CCCcccEEECCCCc-eeecCH
Confidence 3 589999999999 5776532 22222 244444 89999999876443333 34589999999975 764432
Q ss_pred HHHHHhCCccccccccccC
Q 006749 593 PALKKLGKTLVGLNLQNCN 611 (632)
Q Consensus 593 ~~~~~~~~~L~~L~l~~c~ 611 (632)
.....+++|+.|++++++
T Consensus 218 -~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 218 -GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp -TTTTTCCSCCEEECCSSC
T ss_pred -hHhcccccccEEEccCCc
Confidence 233456789999999743
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.84 E-value=3.5e-09 Score=90.34 Aligned_cols=130 Identities=22% Similarity=0.273 Sum_probs=80.6
Q ss_pred CCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcC
Q 006749 468 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 547 (632)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 547 (632)
++|++|+++++ .+++..+...+..++ +|+.|++++| .++.. ..+. .+++|+.|++++ +.++.. +......+
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~-~L~~L~l~~n-~l~~~--~~~~--~l~~L~~L~Ls~-n~i~~~-~~~~~~~l 87 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFE-ELEFLSTINV-GLTSI--ANLP--KLNKLKKLELSD-NRVSGG-LEVLAEKC 87 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCT-TCCEEECTTS-CCCCC--TTCC--CCTTCCEEECCS-SCCCSC-THHHHHHC
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcC-CCcEEECcCC-CCCCc--hhhh--cCCCCCEEECCC-Ccccch-HHHHhhhC
Confidence 55666666663 333222222333333 7777777775 45443 2222 478888898888 466653 23334458
Q ss_pred CCcCeEeccCCCCChhH-HHhhhhhccCCccEEeccCCCCcCcchH--HHHHHhCCccccccccc
Q 006749 548 MFLSYLDVSKCAITDMG-ISALSHAEQLNLQVLSLSSCSEVSNKSM--PALKKLGKTLVGLNLQN 609 (632)
Q Consensus 548 ~~L~~L~L~~~~i~~~~-~~~l~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~l~~ 609 (632)
++|++|++++|.+++.. +..+. .+++|++|++++|. ++.... ......+++|+.|++++
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~--~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLK--KLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGG--GCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCEEECCCCcCCChHHHHHHh--hCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 88999999999888743 24444 78889999998875 654432 13455567788888764
No 106
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.84 E-value=7.6e-08 Score=85.03 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=88.9
Q ss_pred hhHHHHhhccCCccEEecCCCCCCChHHHHHHHhh--cCCCCCeeeccCCCCCChHHHHHHH---hcCCCcCeEeccCCC
Q 006749 485 GIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARL--HSETLELLNLDGCRKITDASLVAIG---NNCMFLSYLDVSKCA 559 (632)
Q Consensus 485 ~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~--~~~~L~~L~l~~c~~l~~~~~~~l~---~~~~~L~~L~L~~~~ 559 (632)
.+...+..++ .|++|+|++|..+.+.+...++.. ..++|++|+|++ +.+++.+...+. ...++|++|+|++|.
T Consensus 27 ~l~~~l~~~~-~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 27 TLKRIQNNDP-DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHTTCT-TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHhcCC-CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-CCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 4445555555 788888888657777776666541 357788888888 478887766654 345788888888888
Q ss_pred CChhHHHhhhh--hccCCccEEec--cCCCCcCcchHHHHHHh---CCccccccccccCCCCHHH
Q 006749 560 ITDMGISALSH--AEQLNLQVLSL--SSCSEVSNKSMPALKKL---GKTLVGLNLQNCNSINSST 617 (632)
Q Consensus 560 i~~~~~~~l~~--~~~~~L~~L~l--~~c~~l~~~~~~~~~~~---~~~L~~L~l~~c~~l~~~~ 617 (632)
|++.+...++. ...+.|++|+| ++| .+++.+...+... .++|++|++++ +.+++.+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~-n~i~~~~ 167 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHF-TQQGPRL 167 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCC-SSHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccC-CCCChHH
Confidence 88887766653 25567888888 554 4777765544433 46788888888 4566665
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.82 E-value=9.7e-10 Score=103.14 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=88.4
Q ss_pred ccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhcc
Q 006749 415 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 494 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 494 (632)
++++.|+++++... .+ ....+..+++|++|++++|. +...... ....+++|++|++++ +.++.... ..+...+
T Consensus 35 ~~l~~L~L~~n~l~-~~--~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~-n~l~~~~~-~~~~~l~ 107 (251)
T 3m19_A 35 ADTEKLDLQSTGLA-TL--SDATFRGLTKLTWLNLDYNQ-LQTLSAG-VFDDLTELGTLGLAN-NQLASLPL-GVFDHLT 107 (251)
T ss_dssp TTCCEEECTTSCCC-CC--CTTTTTTCTTCCEEECTTSC-CCCCCTT-TTTTCTTCCEEECTT-SCCCCCCT-TTTTTCT
T ss_pred CCCCEEEccCCCcC-cc--CHhHhcCcccCCEEECCCCc-CCccCHh-HhccCCcCCEEECCC-CcccccCh-hHhcccC
Confidence 67888888875432 22 12235567888888888774 3321111 123457888888877 34432111 1122233
Q ss_pred CCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccC
Q 006749 495 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQL 574 (632)
Q Consensus 495 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 574 (632)
+|++|+++++ .++......+. .+++|+.|++++ +.++......+ ..+++|+.|+|++|.++......+. .++
T Consensus 108 -~L~~L~L~~N-~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~ 179 (251)
T 3m19_A 108 -QLDKLYLGGN-QLKSLPSGVFD--RLTKLKELRLNT-NQLQSIPAGAF-DKLTNLQTLSLSTNQLQSVPHGAFD--RLG 179 (251)
T ss_dssp -TCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTT--TCT
T ss_pred -CCCEEEcCCC-cCCCcChhHhc--cCCcccEEECcC-CcCCccCHHHc-CcCcCCCEEECCCCcCCccCHHHHh--CCC
Confidence 7788888774 45433222222 367778888877 46654332222 2467788888887776654433333 566
Q ss_pred CccEEeccCCC
Q 006749 575 NLQVLSLSSCS 585 (632)
Q Consensus 575 ~L~~L~l~~c~ 585 (632)
+|+.|++++|+
T Consensus 180 ~L~~L~l~~N~ 190 (251)
T 3m19_A 180 KLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEeeCCc
Confidence 77788877765
No 108
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.79 E-value=1.6e-09 Score=103.83 Aligned_cols=201 Identities=15% Similarity=0.106 Sum_probs=118.1
Q ss_pred CCCCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcc
Q 006749 334 GLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNS 413 (632)
Q Consensus 334 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 413 (632)
.++++++++++++. ++..+. ...++++.|+++++. ++.... ..+..+++|+.|+++++. ++..... ..
T Consensus 8 ~l~~l~~l~~~~~~-l~~ip~----~~~~~l~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~----~~ 75 (290)
T 1p9a_G 8 KVASHLEVNCDKRN-LTALPP----DLPKDTTILHLSENL-LYTFSL-ATLMPYTRLTQLNLDRAE-LTKLQVD----GT 75 (290)
T ss_dssp CSTTCCEEECTTSC-CSSCCS----CCCTTCCEEECTTSC-CSEEEG-GGGTTCTTCCEEECTTSC-CCEEECC----SC
T ss_pred ccCCccEEECCCCC-CCcCCC----CCCCCCCEEEcCCCc-CCccCH-HHhhcCCCCCEEECCCCc-cCcccCC----CC
Confidence 34566666666543 332210 012567777777643 332211 122346777777777644 3322111 23
Q ss_pred cccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhc
Q 006749 414 ASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESC 493 (632)
Q Consensus 414 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 493 (632)
+++|++|+++++. +..+ +..+..+++|++|++++|. ++...... ...+++|++|++++ +.++.... ..+...
T Consensus 76 l~~L~~L~Ls~N~-l~~l---~~~~~~l~~L~~L~l~~N~-l~~l~~~~-~~~l~~L~~L~L~~-N~l~~~~~-~~~~~l 147 (290)
T 1p9a_G 76 LPVLGTLDLSHNQ-LQSL---PLLGQTLPALTVLDVSFNR-LTSLPLGA-LRGLGELQELYLKG-NELKTLPP-GLLTPT 147 (290)
T ss_dssp CTTCCEEECCSSC-CSSC---CCCTTTCTTCCEEECCSSC-CCCCCSST-TTTCTTCCEEECTT-SCCCCCCT-TTTTTC
T ss_pred CCcCCEEECCCCc-CCcC---chhhccCCCCCEEECCCCc-CcccCHHH-HcCCCCCCEEECCC-CCCCccCh-hhcccc
Confidence 4889999998854 3333 2235678999999999985 33221111 23468999999998 44442111 112223
Q ss_pred cCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCC
Q 006749 494 KAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAIT 561 (632)
Q Consensus 494 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~ 561 (632)
+ +|+.|+++++ .++......+. .+++|+.|++++ +.++.... .+ ..+++|+.|+|++|++.
T Consensus 148 ~-~L~~L~L~~N-~l~~l~~~~~~--~l~~L~~L~L~~-N~l~~ip~-~~-~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 148 P-KLEKLSLANN-NLTELPAGLLN--GLENLDTLLLQE-NSLYTIPK-GF-FGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp T-TCCEEECTTS-CCSCCCTTTTT--TCTTCCEEECCS-SCCCCCCT-TT-TTTCCCSEEECCSCCBC
T ss_pred c-CCCEEECCCC-cCCccCHHHhc--CcCCCCEEECCC-CcCCccCh-hh-cccccCCeEEeCCCCcc
Confidence 3 8999999985 56543332222 479999999998 57764321 12 23678999999999865
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.78 E-value=2.5e-09 Score=93.36 Aligned_cols=132 Identities=21% Similarity=0.199 Sum_probs=76.2
Q ss_pred CCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcC
Q 006749 468 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 547 (632)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 547 (632)
++|++|+++++ .+++..+...+..++ +|+.|++++| .++.. ..+. .+++|+.|++++ +.++.. +..+...+
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~-~L~~L~l~~n-~l~~~--~~~~--~l~~L~~L~Ls~-N~l~~~-~~~~~~~l 94 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFV-NLEFLSLINV-GLISV--SNLP--KLPKLKKLELSE-NRIFGG-LDMLAEKL 94 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGG-GCCEEEEESS-CCCCC--SSCC--CCSSCCEEEEES-CCCCSC-CCHHHHHC
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCC-CCCEEeCcCC-CCCCh--hhhc--cCCCCCEEECcC-CcCchH-HHHHHhhC
Confidence 45555555552 233222222223333 6777777664 34433 2222 467888888887 456543 22333448
Q ss_pred CCcCeEeccCCCCChhH-HHhhhhhccCCccEEeccCCCCcCcchH--HHHHHhCCccccccccccC
Q 006749 548 MFLSYLDVSKCAITDMG-ISALSHAEQLNLQVLSLSSCSEVSNKSM--PALKKLGKTLVGLNLQNCN 611 (632)
Q Consensus 548 ~~L~~L~L~~~~i~~~~-~~~l~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~l~~c~ 611 (632)
++|+.|++++|.+++.. +..+. .+++|+.|++++|+ ++.... ......+++|++|++++|.
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~--~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLK--KLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGS--SCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCEEeccCCccCcchhHHHHh--cCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 88888888888877642 24444 67788888888865 543322 1244556778888888854
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.77 E-value=4.7e-09 Score=89.52 Aligned_cols=131 Identities=21% Similarity=0.173 Sum_probs=72.7
Q ss_pred ccccccEEeccccCCC-CccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHh
Q 006749 413 SASKLKSLTLVKCMGI-KDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLE 491 (632)
Q Consensus 413 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 491 (632)
..++|+.|++++|... ..+ +..+..+++|+.|++++|. ++.. .....++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~----------------------- 64 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKL---EGLTDEFEELEFLSTINVG-LTSI---ANLPKLN----------------------- 64 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBC---CSCCTTCTTCCEEECTTSC-CCCC---TTCCCCT-----------------------
T ss_pred CCccCeEEEccCCcCChhHH---HHHHhhcCCCcEEECcCCC-CCCc---hhhhcCC-----------------------
Confidence 3467888888876532 122 1223456666666666653 2211 1111223
Q ss_pred hccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHH---Hhh
Q 006749 492 SCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGI---SAL 568 (632)
Q Consensus 492 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~---~~l 568 (632)
+|++|+++++ .++......+. .+++|+.|++++ +.+++.........+++|++|++++|.+++... ..+
T Consensus 65 ----~L~~L~Ls~n-~i~~~~~~~~~--~l~~L~~L~ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 136 (149)
T 2je0_A 65 ----KLKKLELSDN-RVSGGLEVLAE--KCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVF 136 (149)
T ss_dssp ----TCCEEECCSS-CCCSCTHHHHH--HCTTCCEEECTT-SCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHH
T ss_pred ----CCCEEECCCC-cccchHHHHhh--hCCCCCEEECCC-CcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHH
Confidence 5566666553 34332222222 377888888877 466664332333458888888888887765433 233
Q ss_pred hhhccCCccEEeccC
Q 006749 569 SHAEQLNLQVLSLSS 583 (632)
Q Consensus 569 ~~~~~~~L~~L~l~~ 583 (632)
. .+++|+.|++++
T Consensus 137 ~--~l~~L~~L~l~d 149 (149)
T 2je0_A 137 K--LLPQLTYLDGYD 149 (149)
T ss_dssp H--HCTTCCEETTBC
T ss_pred H--HCCCcccccCCC
Confidence 3 677888887753
No 111
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.72 E-value=7.6e-09 Score=97.00 Aligned_cols=160 Identities=15% Similarity=0.137 Sum_probs=95.8
Q ss_pred CCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcC
Q 006749 388 GSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLC 467 (632)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~ 467 (632)
++++.|+++++. ++..... ....+++|++|+++++. +..+ ....+..+++|++|++++|. ++..... ....+
T Consensus 35 ~~l~~L~L~~n~-l~~~~~~--~~~~l~~L~~L~L~~n~-l~~~--~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l 106 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLSDA--TFRGLTKLTWLNLDYNQ-LQTL--SAGVFDDLTELGTLGLANNQ-LASLPLG-VFDHL 106 (251)
T ss_dssp TTCCEEECTTSC-CCCCCTT--TTTTCTTCCEEECTTSC-CCCC--CTTTTTTCTTCCEEECTTSC-CCCCCTT-TTTTC
T ss_pred CCCCEEEccCCC-cCccCHh--HhcCcccCCEEECCCCc-CCcc--CHhHhccCCcCCEEECCCCc-ccccChh-Hhccc
Confidence 578888888754 3222110 11224889999998854 3322 12235678889999998875 3322111 22345
Q ss_pred CCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcC
Q 006749 468 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 547 (632)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 547 (632)
++|++|++++ +.++.... ..+...+ +|+.|+++++ .++......+. .+++|+.|++++ +.++......+ ..+
T Consensus 107 ~~L~~L~L~~-N~l~~~~~-~~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~-~~l 178 (251)
T 3m19_A 107 TQLDKLYLGG-NQLKSLPS-GVFDRLT-KLKELRLNTN-QLQSIPAGAFD--KLTNLQTLSLST-NQLQSVPHGAF-DRL 178 (251)
T ss_dssp TTCCEEECCS-SCCCCCCT-TTTTTCT-TCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCS-SCCSCCCTTTT-TTC
T ss_pred CCCCEEEcCC-CcCCCcCh-hHhccCC-cccEEECcCC-cCCccCHHHcC--cCcCCCEEECCC-CcCCccCHHHH-hCC
Confidence 8899999987 44442111 1122233 8899999884 55543332233 478899999988 56664433223 347
Q ss_pred CCcCeEeccCCCCChh
Q 006749 548 MFLSYLDVSKCAITDM 563 (632)
Q Consensus 548 ~~L~~L~L~~~~i~~~ 563 (632)
++|+.|+|++|++...
T Consensus 179 ~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 179 GKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCCEEECCSCCBCTT
T ss_pred CCCCEEEeeCCceeCC
Confidence 8899999998887653
No 112
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.69 E-value=9.1e-10 Score=102.54 Aligned_cols=165 Identities=11% Similarity=0.034 Sum_probs=96.1
Q ss_pred CCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHH
Q 006749 438 LSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALA 517 (632)
Q Consensus 438 ~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 517 (632)
+..+++|++|++++|..++...... ...+++|++|++++|+.++..... .+..++ +|++|+++++ .++.. ..+.
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~~n~l~~i~~~-~f~~l~-~L~~L~l~~n-~l~~l--p~~~ 124 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNTRNLTYIDPD-ALKELP-LLKFLGIFNT-GLKMF--PDLT 124 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEEETTCCEECTT-SEECCT-TCCEEEEEEE-CCCSC--CCCT
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCCCCCeeEcCHH-HhCCCC-CCCEEeCCCC-CCccc--cccc
Confidence 3455666666666654232211111 123466777777654444321111 112233 6777777764 33321 1122
Q ss_pred hhcCCCCC---eeeccCCCCCChHHHHHHHhcCCCcC-eEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHH
Q 006749 518 RLHSETLE---LLNLDGCRKITDASLVAIGNNCMFLS-YLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMP 593 (632)
Q Consensus 518 ~~~~~~L~---~L~l~~c~~l~~~~~~~l~~~~~~L~-~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~ 593 (632)
.+++|+ .|++++++.++......+ ..+++|+ .|++++|+++......+. . ++|+.|++++|.+++.....
T Consensus 125 --~l~~L~~L~~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l~~n~l~~i~~~~~~--~-~~L~~L~L~~n~~l~~i~~~ 198 (239)
T 2xwt_C 125 --KVYSTDIFFILEITDNPYMTSIPVNAF-QGLCNETLTLKLYNNGFTSVQGYAFN--G-TKLDAVYLNKNKYLTVIDKD 198 (239)
T ss_dssp --TCCBCCSEEEEEEESCTTCCEECTTTT-TTTBSSEEEEECCSCCCCEECTTTTT--T-CEEEEEECTTCTTCCEECTT
T ss_pred --cccccccccEEECCCCcchhhcCcccc-cchhcceeEEEcCCCCCcccCHhhcC--C-CCCCEEEcCCCCCcccCCHH
Confidence 467777 999998537765443223 3589999 999999998754333333 3 78999999997557644333
Q ss_pred HHHHhCCccccccccccCCCCH
Q 006749 594 ALKKLGKTLVGLNLQNCNSINS 615 (632)
Q Consensus 594 ~~~~~~~~L~~L~l~~c~~l~~ 615 (632)
.+....++|++|++++ ++++.
T Consensus 199 ~~~~l~~~L~~L~l~~-N~l~~ 219 (239)
T 2xwt_C 199 AFGGVYSGPSLLDVSQ-TSVTA 219 (239)
T ss_dssp TTTTCSBCCSEEECTT-CCCCC
T ss_pred HhhccccCCcEEECCC-Ccccc
Confidence 3333327899999999 56654
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.69 E-value=1.3e-08 Score=95.90 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=28.9
Q ss_pred CCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCC
Q 006749 521 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 585 (632)
Q Consensus 521 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 585 (632)
+++|+.|++++ +.+++.. . ...+++|+.|++++|.+++. ..+. .+++|+.|++++|+
T Consensus 127 l~~L~~L~Ls~-N~i~~~~--~-l~~l~~L~~L~L~~N~i~~~--~~l~--~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 127 LKNLEILSIRN-NKLKSIV--M-LGFLSKLEVLDLHGNEITNT--GGLT--RLKKVNWIDLTGQK 183 (263)
T ss_dssp CTTCCEEECTT-SCCCBCG--G-GGGCTTCCEEECTTSCCCBC--TTST--TCCCCCEEEEEEEE
T ss_pred cccccEEECCC-CcCCCCh--H-HccCCCCCEEECCCCcCcch--HHhc--cCCCCCEEeCCCCc
Confidence 55566666655 3444432 1 22355666666666655543 2222 45556666665543
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.66 E-value=5.4e-09 Score=91.25 Aligned_cols=84 Identities=26% Similarity=0.259 Sum_probs=50.7
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHH---Hhhhhhc
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGI---SALSHAE 572 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~---~~l~~~~ 572 (632)
+|++|++++| .++.. +..... .+++|+.|++++ +.+++.........+++|+.|++++|.++.... ..+. .
T Consensus 72 ~L~~L~Ls~N-~l~~~-~~~~~~-~l~~L~~L~Ls~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~ 145 (168)
T 2ell_A 72 KLKKLELSEN-RIFGG-LDMLAE-KLPNLTHLNLSG-NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK--L 145 (168)
T ss_dssp SCCEEEEESC-CCCSC-CCHHHH-HCTTCCEEECBS-SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHT--T
T ss_pred CCCEEECcCC-cCchH-HHHHHh-hCCCCCEEeccC-CccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHH--h
Confidence 5666666553 33332 111222 377888888887 466653221223358888888888887765433 2333 7
Q ss_pred cCCccEEeccCCC
Q 006749 573 QLNLQVLSLSSCS 585 (632)
Q Consensus 573 ~~~L~~L~l~~c~ 585 (632)
+++|++|++++|.
T Consensus 146 l~~L~~L~l~~n~ 158 (168)
T 2ell_A 146 LPQLTYLDGYDRE 158 (168)
T ss_dssp CSSCCEETTEETT
T ss_pred CccCcEecCCCCC
Confidence 7888888888865
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.56 E-value=8.1e-09 Score=94.44 Aligned_cols=144 Identities=21% Similarity=0.161 Sum_probs=84.8
Q ss_pred CCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhc
Q 006749 441 NCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLH 520 (632)
Q Consensus 441 ~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 520 (632)
.+.+++|++++|. ++..........+++|++|++++ +.++...-. .+...+ +|++|+++++ .++......+. .
T Consensus 31 ~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~-~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~--~ 103 (220)
T 2v70_A 31 PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSN-NKITDIEEG-AFEGAS-GVNEILLTSN-RLENVQHKMFK--G 103 (220)
T ss_dssp CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCS-SCCCEECTT-TTTTCT-TCCEEECCSS-CCCCCCGGGGT--T
T ss_pred CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCC-CcCCEECHH-HhCCCC-CCCEEECCCC-ccCccCHhHhc--C
Confidence 4567899998875 33221111234568888888887 445422111 122233 7888888874 45443333233 4
Q ss_pred CCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHH
Q 006749 521 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPAL 595 (632)
Q Consensus 521 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~ 595 (632)
+++|+.|++++ +.++......+. .+++|+.|+|++|+++......+. .+++|+.|++++++-..+..+.++
T Consensus 104 l~~L~~L~Ls~-N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~c~c~l~~l 174 (220)
T 2v70_A 104 LESLKTLMLRS-NRITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFD--TLHSLSTLNLLANPFNCNCYLAWL 174 (220)
T ss_dssp CSSCCEEECTT-SCCCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTT--TCTTCCEEECCSCCEECSGGGHHH
T ss_pred CcCCCEEECCC-CcCCeECHhHcC-CCccCCEEECCCCcCCEECHHHhc--CCCCCCEEEecCcCCcCCCchHHH
Confidence 77888888887 566543322232 477888888888877665444444 677888888888664334444443
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.54 E-value=1e-07 Score=89.73 Aligned_cols=77 Identities=19% Similarity=0.177 Sum_probs=58.3
Q ss_pred CCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCc
Q 006749 522 ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKT 601 (632)
Q Consensus 522 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 601 (632)
++|+.|++++ +.+++.. . ...+++|+.|++++|++++.. .+. .+++|+.|++++|. +++. .. ...+++
T Consensus 106 ~~L~~L~L~~-N~l~~~~--~-l~~l~~L~~L~Ls~N~i~~~~--~l~--~l~~L~~L~L~~N~-i~~~--~~-l~~l~~ 173 (263)
T 1xeu_A 106 ACLSRLFLDN-NELRDTD--S-LIHLKNLEILSIRNNKLKSIV--MLG--FLSKLEVLDLHGNE-ITNT--GG-LTRLKK 173 (263)
T ss_dssp SSCCEEECCS-SCCSBSG--G-GTTCTTCCEEECTTSCCCBCG--GGG--GCTTCCEEECTTSC-CCBC--TT-STTCCC
T ss_pred CcccEEEccC-CccCCCh--h-hcCcccccEEECCCCcCCCCh--HHc--cCCCCCEEECCCCc-Ccch--HH-hccCCC
Confidence 6888888888 4666542 2 345999999999999988753 344 78899999999965 7655 33 334667
Q ss_pred ccccccccc
Q 006749 602 LVGLNLQNC 610 (632)
Q Consensus 602 L~~L~l~~c 610 (632)
|+.|+++++
T Consensus 174 L~~L~l~~N 182 (263)
T 1xeu_A 174 VNWIDLTGQ 182 (263)
T ss_dssp CCEEEEEEE
T ss_pred CCEEeCCCC
Confidence 999999984
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.54 E-value=2.6e-08 Score=98.84 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=17.1
Q ss_pred ccccEEeccccCCCCccccccccCC-CCCCCCeEeccCCC
Q 006749 415 SKLKSLTLVKCMGIKDMATEMPMLS-PNCSLRSLSIRNCP 453 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 453 (632)
+.++.|+++++. +..+.. ..+. .+++|++|++++|.
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~--~~~~~~l~~L~~L~L~~N~ 75 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRA--EWTPTRLTNLHSLLLSHNH 75 (361)
T ss_dssp TTCSEEECCSSC-CCEECT--TSSSSCCTTCCEEECCSSC
T ss_pred CCCCEEECCCCC-CCccCh--hhhhhcccccCEEECCCCc
Confidence 456666666642 222211 1122 45566666666553
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.50 E-value=1.1e-08 Score=92.93 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=31.0
Q ss_pred CCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCC
Q 006749 521 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 585 (632)
Q Consensus 521 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 585 (632)
+++|+.|++++ +.++..... ....+++|+.|++++|.++......+. .+++|++|++++|+
T Consensus 99 l~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 99 LTQLKELALNT-NQLQSLPDG-VFDKLTQLKDLRLYQNQLKSVPDGVFD--RLTSLQYIWLHDNP 159 (208)
T ss_dssp CTTCCEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSCC
T ss_pred ccCCCEEEcCC-CcCcccCHh-HhccCCcCCEEECCCCccceeCHHHhc--cCCCccEEEecCCC
Confidence 55666666665 344432211 112356666666666665543222222 45566666666654
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.48 E-value=1.6e-08 Score=92.48 Aligned_cols=144 Identities=15% Similarity=0.158 Sum_probs=86.9
Q ss_pred CCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhc
Q 006749 441 NCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLH 520 (632)
Q Consensus 441 ~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 520 (632)
.++|+.|++++|. +....... ...+++|+.|++++ +.++..... .+...+ +|++|+|+++ .++......+. .
T Consensus 31 ~~~l~~L~l~~n~-i~~i~~~~-~~~l~~L~~L~Ls~-N~i~~~~~~-~~~~l~-~L~~L~Ls~N-~l~~l~~~~f~--~ 102 (220)
T 2v9t_B 31 PETITEIRLEQNT-IKVIPPGA-FSPYKKLRRIDLSN-NQISELAPD-AFQGLR-SLNSLVLYGN-KITELPKSLFE--G 102 (220)
T ss_dssp CTTCCEEECCSSC-CCEECTTS-STTCTTCCEEECCS-SCCCEECTT-TTTTCS-SCCEEECCSS-CCCCCCTTTTT--T
T ss_pred CcCCCEEECCCCc-CCCcCHhH-hhCCCCCCEEECCC-CcCCCcCHH-HhhCCc-CCCEEECCCC-cCCccCHhHcc--C
Confidence 4689999999875 33221111 23458899999987 445422111 122233 7888888874 55533222222 4
Q ss_pred CCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHH
Q 006749 521 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALK 596 (632)
Q Consensus 521 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 596 (632)
+++|+.|++++ +.++......+ ..+++|+.|+|++|.++......+. .+++|+.|++++++...+..+.++.
T Consensus 103 l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~~~c~c~l~~l~ 174 (220)
T 2v9t_B 103 LFSLQLLLLNA-NKINCLRVDAF-QDLHNLNLLSLYDNKLQTIAKGTFS--PLRAIQTMHLAQNPFICDCHLKWLA 174 (220)
T ss_dssp CTTCCEEECCS-SCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSCEECSGGGHHHH
T ss_pred CCCCCEEECCC-CCCCEeCHHHc-CCCCCCCEEECCCCcCCEECHHHHh--CCCCCCEEEeCCCCcCCCCccHHHH
Confidence 77888888887 56665433333 3478888888888887665444444 6778888888887644444455543
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.47 E-value=8.3e-08 Score=84.30 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=43.9
Q ss_pred CCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhH-HHhhhhhccCCccEEeccCCCCcCcchHH--HHHH
Q 006749 521 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMG-ISALSHAEQLNLQVLSLSSCSEVSNKSMP--ALKK 597 (632)
Q Consensus 521 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~-~~~l~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~ 597 (632)
+++|+.|++++ +.++.... .+...+++|+.|++++|.+++.. +..+. .+++|+.|++++|+ ++..... ....
T Consensus 63 l~~L~~L~Ls~-N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~--~l~~L~~L~l~~N~-i~~~~~~~~~~~~ 137 (176)
T 1a9n_A 63 LRRLKTLLVNN-NRICRIGE-GLDQALPDLTELILTNNSLVELGDLDPLA--SLKSLTYLCILRNP-VTNKKHYRLYVIY 137 (176)
T ss_dssp CSSCCEEECCS-SCCCEECS-CHHHHCTTCCEEECCSCCCCCGGGGGGGG--GCTTCCEEECCSSG-GGGSTTHHHHHHH
T ss_pred CCCCCEEECCC-CcccccCc-chhhcCCCCCEEECCCCcCCcchhhHhhh--cCCCCCEEEecCCC-CCCcHhHHHHHHH
Confidence 55666666666 35543321 12223666666666666665422 12333 56666777776654 4322111 1234
Q ss_pred hCCcccccccccc
Q 006749 598 LGKTLVGLNLQNC 610 (632)
Q Consensus 598 ~~~~L~~L~l~~c 610 (632)
.+++|+.|+++++
T Consensus 138 ~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 138 KVPQVRVLDFQKV 150 (176)
T ss_dssp HCTTCSEETTEEC
T ss_pred HCCccceeCCCcC
Confidence 4556777776663
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.47 E-value=1.1e-07 Score=99.27 Aligned_cols=192 Identities=15% Similarity=0.134 Sum_probs=113.6
Q ss_pred CccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCC
Q 006749 362 LNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPN 441 (632)
Q Consensus 362 ~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 441 (632)
.+|+.|+++++ .++. +..- -+++|+.|+++++. ++... ..+++|++|++++|. ++.+.. +.
T Consensus 59 ~~L~~L~Ls~n-~L~~--lp~~--l~~~L~~L~Ls~N~-l~~ip------~~l~~L~~L~Ls~N~-l~~ip~----l~-- 119 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSS--LPDN--LPPQITVLEITQNA-LISLP------ELPASLEYLDACDNR-LSTLPE----LP-- 119 (571)
T ss_dssp TTCSEEECCSS-CCSC--CCSC--CCTTCSEEECCSSC-CSCCC------CCCTTCCEEECCSSC-CSCCCC----CC--
T ss_pred CCccEEEeCCC-CCCc--cCHh--HcCCCCEEECcCCC-Ccccc------cccCCCCEEEccCCC-CCCcch----hh--
Confidence 58999999885 3432 1110 13779999998754 44322 234889999998864 333322 22
Q ss_pred CCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcC
Q 006749 442 CSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHS 521 (632)
Q Consensus 442 ~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 521 (632)
.+|++|++++|. ++. +.. .+++|+.|++++ +.++. +.. . +++|+.|+++++ .++.... . .
T Consensus 120 ~~L~~L~Ls~N~-l~~--lp~---~l~~L~~L~Ls~-N~l~~--lp~---~-l~~L~~L~Ls~N-~L~~lp~----l--~ 179 (571)
T 3cvr_A 120 ASLKHLDVDNNQ-LTM--LPE---LPALLEYINADN-NQLTM--LPE---L-PTSLEVLSVRNN-QLTFLPE----L--P 179 (571)
T ss_dssp TTCCEEECCSSC-CSC--CCC---CCTTCCEEECCS-SCCSC--CCC---C-CTTCCEEECCSS-CCSCCCC----C--C
T ss_pred cCCCEEECCCCc-CCC--CCC---cCccccEEeCCC-CccCc--CCC---c-CCCcCEEECCCC-CCCCcch----h--h
Confidence 289999998875 332 111 468899999987 44442 111 1 238888988885 4544211 1 2
Q ss_pred CCCCeeeccCCCCCChHHH--HHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHH
Q 006749 522 ETLELLNLDGCRKITDASL--VAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKK 597 (632)
Q Consensus 522 ~~L~~L~l~~c~~l~~~~~--~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 597 (632)
++|+.|++++ +.++.... ..+....+.|+.|+|++|.++.. ...+. .+++|+.|+|++|+ ++......+..
T Consensus 180 ~~L~~L~Ls~-N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~l-p~~l~--~l~~L~~L~L~~N~-l~~~~p~~l~~ 252 (571)
T 3cvr_A 180 ESLEALDVST-NLLESLPAVPVRNHHSEETEIFFRCRENRITHI-PENIL--SLDPTCTIILEDNP-LSSRIRESLSQ 252 (571)
T ss_dssp TTCCEEECCS-SCCSSCCCCC--------CCEEEECCSSCCCCC-CGGGG--GSCTTEEEECCSSS-CCHHHHHHHHH
T ss_pred CCCCEEECcC-CCCCchhhHHHhhhcccccceEEecCCCcceec-CHHHh--cCCCCCEEEeeCCc-CCCcCHHHHHH
Confidence 7888888888 46653221 01111122338888888887742 22233 47788888888865 76655555444
No 122
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.44 E-value=2.5e-09 Score=105.75 Aligned_cols=186 Identities=12% Similarity=0.038 Sum_probs=77.8
Q ss_pred CCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccc
Q 006749 336 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSAS 415 (632)
Q Consensus 336 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 415 (632)
+++++|+++++. ++...... ...+++|++|+|+++....... ...+.+++++.++.+.++..+...... ....++
T Consensus 30 ~~l~~L~Ls~N~-i~~i~~~~-f~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~l~~l~~~--~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQKGA-FSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYINPE--AFQNLP 104 (350)
T ss_dssp TTCSEEEEESCC-CSEECTTS-STTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETTCCEECTT--SBCCCT
T ss_pred CCCCEEEccCCc-CCCcCHHH-HcCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCcccccCch--hhhhcc
Confidence 578888888764 44332211 2456788888887764322110 011123455555444433333322110 112236
Q ss_pred cccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccC
Q 006749 416 KLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKA 495 (632)
Q Consensus 416 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 495 (632)
+|++|+++++... ... ........++..|++.++..+.......+......++.|++++ +.++.-.-. .+ ...
T Consensus 105 ~L~~L~l~~n~l~-~~~--~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~-~f-~~~- 177 (350)
T 4ay9_X 105 NLQYLLISNTGIK-HLP--DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS-AF-NGT- 177 (350)
T ss_dssp TCCEEEEEEECCS-SCC--CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT-SS-TTE-
T ss_pred ccccccccccccc-cCC--chhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh-hc-ccc-
Confidence 6666666664321 111 0111223344555555443333222111222223455566655 333211000 00 011
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKIT 536 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 536 (632)
+|++|.+++++.++......+. .+++|+.|++++ +.++
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~--~l~~L~~LdLs~-N~l~ 215 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFH--GASGPVILDISR-TRIH 215 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTT--TEECCSEEECTT-SCCC
T ss_pred chhHHhhccCCcccCCCHHHhc--cCcccchhhcCC-CCcC
Confidence 4555555554444433222222 245556666655 3444
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.43 E-value=1.2e-07 Score=83.24 Aligned_cols=107 Identities=13% Similarity=0.081 Sum_probs=64.0
Q ss_pred CCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcC
Q 006749 468 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 547 (632)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 547 (632)
++|++|++++ +.+++- ..+..++ +|++|+++++ .++......+. .+++|+.|++++ +.+++.........+
T Consensus 42 ~~L~~L~Ls~-N~l~~~---~~l~~l~-~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~L~~-N~i~~~~~~~~l~~l 112 (176)
T 1a9n_A 42 DQFDAIDFSD-NEIRKL---DGFPLLR-RLKTLLVNNN-RICRIGEGLDQ--ALPDLTELILTN-NSLVELGDLDPLASL 112 (176)
T ss_dssp TCCSEEECCS-SCCCEE---CCCCCCS-SCCEEECCSS-CCCEECSCHHH--HCTTCCEEECCS-CCCCCGGGGGGGGGC
T ss_pred CCCCEEECCC-CCCCcc---cccccCC-CCCEEECCCC-cccccCcchhh--cCCCCCEEECCC-CcCCcchhhHhhhcC
Confidence 4566666655 333321 1122233 6777777774 45443222223 478899999988 567653321123358
Q ss_pred CCcCeEeccCCCCChhHHH---hhhhhccCCccEEeccCCC
Q 006749 548 MFLSYLDVSKCAITDMGIS---ALSHAEQLNLQVLSLSSCS 585 (632)
Q Consensus 548 ~~L~~L~L~~~~i~~~~~~---~l~~~~~~~L~~L~l~~c~ 585 (632)
++|+.|++++|.++..... .+ ..+++|+.|+++++.
T Consensus 113 ~~L~~L~l~~N~i~~~~~~~~~~~--~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 113 KSLTYLCILRNPVTNKKHYRLYVI--YKVPQVRVLDFQKVK 151 (176)
T ss_dssp TTCCEEECCSSGGGGSTTHHHHHH--HHCTTCSEETTEECC
T ss_pred CCCCEEEecCCCCCCcHhHHHHHH--HHCCccceeCCCcCC
Confidence 8999999999987653221 23 378899999998865
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.42 E-value=1.4e-08 Score=106.50 Aligned_cols=124 Identities=19% Similarity=0.163 Sum_probs=80.8
Q ss_pred CCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcC
Q 006749 468 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 547 (632)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 547 (632)
..|+.|++++ +.++. +.. +..++ +|+.|+++++ .++.. ...+. .+++|+.|++++ +.++... . ...+
T Consensus 441 ~~L~~L~Ls~-n~l~~--lp~-~~~l~-~L~~L~Ls~N-~l~~l-p~~~~--~l~~L~~L~Ls~-N~l~~lp--~-l~~l 507 (567)
T 1dce_A 441 ADVRVLHLAH-KDLTV--LCH-LEQLL-LVTHLDLSHN-RLRAL-PPALA--ALRCLEVLQASD-NALENVD--G-VANL 507 (567)
T ss_dssp TTCSEEECTT-SCCSS--CCC-GGGGT-TCCEEECCSS-CCCCC-CGGGG--GCTTCCEEECCS-SCCCCCG--G-GTTC
T ss_pred cCceEEEecC-CCCCC--CcC-ccccc-cCcEeecCcc-ccccc-chhhh--cCCCCCEEECCC-CCCCCCc--c-cCCC
Confidence 3577888877 34432 112 33333 7888888874 55422 12233 488999999988 5776532 3 3458
Q ss_pred CCcCeEeccCCCCChhH-HHhhhhhccCCccEEeccCCCCcCcc--hHHHHHHhCCccccccc
Q 006749 548 MFLSYLDVSKCAITDMG-ISALSHAEQLNLQVLSLSSCSEVSNK--SMPALKKLGKTLVGLNL 607 (632)
Q Consensus 548 ~~L~~L~L~~~~i~~~~-~~~l~~~~~~~L~~L~l~~c~~l~~~--~~~~~~~~~~~L~~L~l 607 (632)
++|+.|+|++|.++... ...+. .+++|+.|++++|+ ++.. ....+...+|+|+.|++
T Consensus 508 ~~L~~L~Ls~N~l~~~~~p~~l~--~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 508 PRLQELLLCNNRLQQSAAIQPLV--SCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCEEECCSSCCCSSSTTGGGG--GCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCCCCcHHHh--cCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 89999999999887654 44555 78899999999865 5433 23345666778888764
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.40 E-value=5.2e-08 Score=89.02 Aligned_cols=135 Identities=14% Similarity=0.120 Sum_probs=83.5
Q ss_pred ccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhcc
Q 006749 415 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 494 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 494 (632)
+.+++|+++++. +..+.. ...+..+++|++|++++|. ++......+ ..+++|++|++++ +.++.... ..+..++
T Consensus 32 ~~~~~L~L~~N~-l~~~~~-~~~~~~l~~L~~L~L~~N~-i~~i~~~~~-~~l~~L~~L~Ls~-N~l~~~~~-~~~~~l~ 105 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLEA-TGIFKKLPQLRKINFSNNK-ITDIEEGAF-EGASGVNEILLTS-NRLENVQH-KMFKGLE 105 (220)
T ss_dssp TTCSEEECCSSC-CCEECC-CCCGGGCTTCCEEECCSSC-CCEECTTTT-TTCTTCCEEECCS-SCCCCCCG-GGGTTCS
T ss_pred CCCCEEEcCCCc-CCccCc-hhhhccCCCCCEEECCCCc-CCEECHHHh-CCCCCCCEEECCC-CccCccCH-hHhcCCc
Confidence 567889888854 333211 1124578899999998875 332221122 3458899999987 44432211 1223334
Q ss_pred CCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCC
Q 006749 495 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAIT 561 (632)
Q Consensus 495 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~ 561 (632)
+|++|+++++ .++......+. .+++|+.|++++ +.++......+ ..+++|+.|+|++|++.
T Consensus 106 -~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 106 -SLKTLMLRSN-RITCVGNDSFI--GLSSVRLLSLYD-NQITTVAPGAF-DTLHSLSTLNLLANPFN 166 (220)
T ss_dssp -SCCEEECTTS-CCCCBCTTSST--TCTTCSEEECTT-SCCCCBCTTTT-TTCTTCCEEECCSCCEE
T ss_pred -CCCEEECCCC-cCCeECHhHcC--CCccCCEEECCC-CcCCEECHHHh-cCCCCCCEEEecCcCCc
Confidence 8999999884 55543333333 478899999988 57765433333 34888999999998765
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.38 E-value=6.3e-08 Score=88.45 Aligned_cols=134 Identities=18% Similarity=0.183 Sum_probs=84.3
Q ss_pred ccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhcc
Q 006749 415 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 494 (632)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 494 (632)
++++.|+++++. +..+. ...+..+++|+.|++++|. ++......+ ..+++|++|++++ +.++.-. ...+...+
T Consensus 32 ~~l~~L~l~~n~-i~~i~--~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~-~~l~~L~~L~Ls~-N~l~~l~-~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIP--PGAFSPYKKLRRIDLSNNQ-ISELAPDAF-QGLRSLNSLVLYG-NKITELP-KSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSSC-CCEEC--TTSSTTCTTCCEEECCSSC-CCEECTTTT-TTCSSCCEEECCS-SCCCCCC-TTTTTTCT
T ss_pred cCCCEEECCCCc-CCCcC--HhHhhCCCCCCEEECCCCc-CCCcCHHHh-hCCcCCCEEECCC-CcCCccC-HhHccCCC
Confidence 688999998854 33332 2245678899999999875 332211222 3458899999988 4444211 11122333
Q ss_pred CCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCC
Q 006749 495 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAIT 561 (632)
Q Consensus 495 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~ 561 (632)
+|+.|+|+++ .++......+. .+++|+.|++++ +.++......+ ..+++|+.|+|++|++.
T Consensus 105 -~L~~L~L~~N-~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 105 -SLQLLLLNAN-KINCLRVDAFQ--DLHNLNLLSLYD-NKLQTIAKGTF-SPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp -TCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCS-SCCSCCCTTTT-TTCTTCCEEECCSSCEE
T ss_pred -CCCEEECCCC-CCCEeCHHHcC--CCCCCCEEECCC-CcCCEECHHHH-hCCCCCCEEEeCCCCcC
Confidence 8999999884 55544333333 478999999988 56665443223 34888999999998764
No 127
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.33 E-value=3.2e-07 Score=84.37 Aligned_cols=82 Identities=16% Similarity=0.083 Sum_probs=45.3
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 575 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 575 (632)
+|+.|+|+++ .++......+. .+++|+.|++++ +.++... .. ...+++|+.|+|++|.++......+. .+++
T Consensus 89 ~L~~L~Ls~N-~l~~l~~~~~~--~l~~L~~L~Ls~-N~l~~lp-~~-~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~ 160 (229)
T 3e6j_A 89 QLTVLDLGTN-QLTVLPSAVFD--RLVHLKELFMCC-NKLTELP-RG-IERLTHLTHLALDQNQLKSIPHGAFD--RLSS 160 (229)
T ss_dssp TCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCS-SCCCSCC-TT-GGGCTTCSEEECCSSCCCCCCTTTTT--TCTT
T ss_pred CcCEEECCCC-cCCccChhHhC--cchhhCeEeccC-CcccccC-cc-cccCCCCCEEECCCCcCCccCHHHHh--CCCC
Confidence 5666666653 44332222112 366777777776 4555321 11 13467777777777776653333333 5667
Q ss_pred ccEEeccCCC
Q 006749 576 LQVLSLSSCS 585 (632)
Q Consensus 576 L~~L~l~~c~ 585 (632)
|+.|++.+++
T Consensus 161 L~~L~l~~N~ 170 (229)
T 3e6j_A 161 LTHAYLFGNP 170 (229)
T ss_dssp CCEEECTTSC
T ss_pred CCEEEeeCCC
Confidence 7777777765
No 128
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.33 E-value=1.1e-07 Score=86.24 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=60.9
Q ss_pred cCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhC
Q 006749 520 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLG 599 (632)
Q Consensus 520 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 599 (632)
.+++|++|++++ +.++..... ....+++|++|++++|.++......+. .+++|++|++++|. ++.... .....+
T Consensus 74 ~l~~L~~L~Ls~-n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~-l~~~~~-~~~~~l 147 (208)
T 2o6s_A 74 KLTSLTYLNLST-NQLQSLPNG-VFDKLTQLKELALNTNQLQSLPDGVFD--KLTQLKDLRLYQNQ-LKSVPD-GVFDRL 147 (208)
T ss_dssp TCTTCCEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSC-CSCCCT-TTTTTC
T ss_pred CCCCcCEEECCC-CcCCccCHh-HhcCccCCCEEEcCCCcCcccCHhHhc--cCCcCCEEECCCCc-cceeCH-HHhccC
Confidence 478899999988 466543322 224589999999999998764443344 78899999999965 754332 223446
Q ss_pred CccccccccccC
Q 006749 600 KTLVGLNLQNCN 611 (632)
Q Consensus 600 ~~L~~L~l~~c~ 611 (632)
++|++|++++++
T Consensus 148 ~~L~~L~l~~N~ 159 (208)
T 2o6s_A 148 TSLQYIWLHDNP 159 (208)
T ss_dssp TTCCEEECCSCC
T ss_pred CCccEEEecCCC
Confidence 789999999954
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.32 E-value=8.5e-08 Score=95.12 Aligned_cols=170 Identities=18% Similarity=0.135 Sum_probs=112.8
Q ss_pred CCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhc
Q 006749 441 NCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLH 520 (632)
Q Consensus 441 ~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 520 (632)
.+.++.|++++|. ++......+...+++|++|++++ +.++..... .+..++ +|++|+|+++ .++......+. .
T Consensus 38 ~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~-~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~--~ 110 (361)
T 2xot_A 38 PSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSE-AFVPVP-NLRYLDLSSN-HLHTLDEFLFS--D 110 (361)
T ss_dssp CTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCS-SCCCEECTT-TTTTCT-TCCEEECCSS-CCCEECTTTTT--T
T ss_pred CCCCCEEECCCCC-CCccChhhhhhcccccCEEECCC-CcCCccChh-hccCCC-CCCEEECCCC-cCCcCCHHHhC--C
Confidence 5679999999985 44332222322579999999998 555432211 122334 8999999994 56554333333 4
Q ss_pred CCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhh-hccCCccEEeccCCCCcCcchHHHHHHhC
Q 006749 521 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSH-AEQLNLQVLSLSSCSEVSNKSMPALKKLG 599 (632)
Q Consensus 521 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 599 (632)
+++|+.|++++ +.++......+ ..+++|+.|+|++|.++......+.. ..+++|+.|+|++|. ++......+..+.
T Consensus 111 l~~L~~L~L~~-N~i~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 187 (361)
T 2xot_A 111 LQALEVLLLYN-NHIVVVDRNAF-EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLP 187 (361)
T ss_dssp CTTCCEEECCS-SCCCEECTTTT-TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSC
T ss_pred CcCCCEEECCC-CcccEECHHHh-CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhcc
Confidence 89999999999 67775433333 35899999999999987644433311 257899999999964 8766655555544
Q ss_pred C-ccccccccccCCCCHHHHHH
Q 006749 600 K-TLVGLNLQNCNSINSSTVAR 620 (632)
Q Consensus 600 ~-~L~~L~l~~c~~l~~~~~~~ 620 (632)
. .|+.|++++++-..+..+.+
T Consensus 188 ~~~l~~l~l~~N~~~C~C~l~~ 209 (361)
T 2xot_A 188 AWVKNGLYLHNNPLECDCKLYQ 209 (361)
T ss_dssp HHHHTTEECCSSCEECCHHHHH
T ss_pred HhhcceEEecCCCccCCcCcHH
Confidence 3 15899999966555666554
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.27 E-value=6.2e-07 Score=93.55 Aligned_cols=191 Identities=13% Similarity=0.050 Sum_probs=123.5
Q ss_pred CCcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhcccc
Q 006749 336 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSAS 415 (632)
Q Consensus 336 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 415 (632)
.+|+.|+++++. ++..+. ..+++|+.|+++++ .++.. . ..+++|+.|+++++. ++.... + ..
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~----~l~~~L~~L~Ls~N-~l~~i--p---~~l~~L~~L~Ls~N~-l~~ip~---l---~~ 120 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPD----NLPPQITVLEITQN-ALISL--P---ELPASLEYLDACDNR-LSTLPE---L---PA 120 (571)
T ss_dssp TTCSEEECCSSC-CSCCCS----CCCTTCSEEECCSS-CCSCC--C---CCCTTCCEEECCSSC-CSCCCC---C---CT
T ss_pred CCccEEEeCCCC-CCccCH----hHcCCCCEEECcCC-CCccc--c---cccCCCCEEEccCCC-CCCcch---h---hc
Confidence 489999999875 443211 11378999999986 44422 2 347899999999864 443221 1 13
Q ss_pred cccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccC
Q 006749 416 KLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKA 495 (632)
Q Consensus 416 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 495 (632)
+|++|++++|. ++.+. . .+++|+.|++++|. ++.. ...+++|++|++++ +.++. +..+ . +
T Consensus 121 ~L~~L~Ls~N~-l~~lp----~--~l~~L~~L~Ls~N~-l~~l-----p~~l~~L~~L~Ls~-N~L~~--lp~l-~---~ 180 (571)
T 3cvr_A 121 SLKHLDVDNNQ-LTMLP----E--LPALLEYINADNNQ-LTML-----PELPTSLEVLSVRN-NQLTF--LPEL-P---E 180 (571)
T ss_dssp TCCEEECCSSC-CSCCC----C--CCTTCCEEECCSSC-CSCC-----CCCCTTCCEEECCS-SCCSC--CCCC-C---T
T ss_pred CCCEEECCCCc-CCCCC----C--cCccccEEeCCCCc-cCcC-----CCcCCCcCEEECCC-CCCCC--cchh-h---C
Confidence 99999999965 33331 1 57999999999986 3321 11468999999998 44543 1111 1 3
Q ss_pred CccEEecCCCCCCChHHH-H-HHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhh
Q 006749 496 GLVKVNLSGCLNLTDEVV-L-ALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALS 569 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~-~-~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~ 569 (632)
+|+.|+++++ .++.... . .+.. ..+.|+.|++++ +.++... ..+.. +++|+.|+|++|+++......+.
T Consensus 181 ~L~~L~Ls~N-~L~~lp~~~~~L~~-~~~~L~~L~Ls~-N~l~~lp-~~l~~-l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 181 SLEALDVSTN-LLESLPAVPVRNHH-SEETEIFFRCRE-NRITHIP-ENILS-LDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp TCCEEECCSS-CCSSCCCCC---------CCEEEECCS-SCCCCCC-GGGGG-SCTTEEEECCSSSCCHHHHHHHH
T ss_pred CCCEEECcCC-CCCchhhHHHhhhc-ccccceEEecCC-CcceecC-HHHhc-CCCCCEEEeeCCcCCCcCHHHHH
Confidence 8999999985 5543211 0 1111 123349999998 5777532 22334 89999999999999887666655
No 131
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.25 E-value=1.8e-05 Score=69.05 Aligned_cols=124 Identities=16% Similarity=0.197 Sum_probs=61.1
Q ss_pred HHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhcc--CCccEEecCCCCCCChHHHHHHHhh--cCCCCCeeeccCCC
Q 006749 458 ASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK--AGLVKVNLSGCLNLTDEVVLALARL--HSETLELLNLDGCR 533 (632)
Q Consensus 458 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~--~~L~~L~l~~c~~l~~~~~~~l~~~--~~~~L~~L~l~~c~ 533 (632)
..+..+...-+.|++|+++++..++++|...+.+... ..|++|+|++| .+.+.+...++.. ..+.|+.|+|+. +
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~-N 108 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES-N 108 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS-S
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC-C
Confidence 3444444444667777766544666666555544321 24556666553 5555544333321 235555666655 4
Q ss_pred CCChHHHHHHHhc---CCCcCeEeccCC---CCChhHHHhhhh--hccCCccEEeccC
Q 006749 534 KITDASLVAIGNN---CMFLSYLDVSKC---AITDMGISALSH--AEQLNLQVLSLSS 583 (632)
Q Consensus 534 ~l~~~~~~~l~~~---~~~L~~L~L~~~---~i~~~~~~~l~~--~~~~~L~~L~l~~ 583 (632)
.|++.+...+.+. -+.|++|+|+++ .+.+.+...++. ...+.|..|+++.
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 5555555555432 234555555543 344444333321 1444555555544
No 132
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.22 E-value=1.5e-05 Score=69.66 Aligned_cols=124 Identities=16% Similarity=0.151 Sum_probs=93.8
Q ss_pred hhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhh--cCCCCCeeeccCCCCCChHHHHHHH---hcCCCcCeEeccCC
Q 006749 484 VGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARL--HSETLELLNLDGCRKITDASLVAIG---NNCMFLSYLDVSKC 558 (632)
Q Consensus 484 ~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~--~~~~L~~L~l~~c~~l~~~~~~~l~---~~~~~L~~L~L~~~ 558 (632)
+.+..+....+ .|++|+|++++.+.+.+...++.. ..+.|+.|+|++ +.+++.+...+. ..-+.|++|+|++|
T Consensus 31 ~~l~~ll~~n~-~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 31 SCINRLREDDT-DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHTTCS-SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHhcCC-CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 44555555554 899999998668998887777652 347899999999 599998876665 45688999999999
Q ss_pred CCChhHHHhhhhh--ccCCccEEeccCCC--CcCcchHHH---HHHhCCccccccccc
Q 006749 559 AITDMGISALSHA--EQLNLQVLSLSSCS--EVSNKSMPA---LKKLGKTLVGLNLQN 609 (632)
Q Consensus 559 ~i~~~~~~~l~~~--~~~~L~~L~l~~c~--~l~~~~~~~---~~~~~~~L~~L~l~~ 609 (632)
.|++.|...+++. ....|++|+|+++. .+.+.+-.. ....-+.|.+|+++.
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 9999999888742 55679999998753 466554333 333456799999976
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.21 E-value=1.2e-07 Score=84.57 Aligned_cols=118 Identities=17% Similarity=0.129 Sum_probs=67.9
Q ss_pred CCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcC
Q 006749 468 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 547 (632)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 547 (632)
++|++|++++ +.++.- ...+...+ +|+.|+++++ .++......+. .+++|+.|++++ +.++......+ ..+
T Consensus 31 ~~l~~L~L~~-n~i~~i--p~~~~~l~-~L~~L~Ls~N-~i~~i~~~~f~--~l~~L~~L~Ls~-N~l~~i~~~~f-~~l 101 (193)
T 2wfh_A 31 RDVTELYLDG-NQFTLV--PKELSNYK-HLTLIDLSNN-RISTLSNQSFS--NMTQLLTLILSY-NRLRCIPPRTF-DGL 101 (193)
T ss_dssp TTCCEEECCS-SCCCSC--CGGGGGCT-TCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCS-SCCCBCCTTTT-TTC
T ss_pred CCCCEEECCC-CcCchh--HHHhhccc-CCCEEECCCC-cCCEeCHhHcc--CCCCCCEEECCC-CccCEeCHHHh-CCC
Confidence 5788888877 444321 12233333 7888888773 45443332233 367778888877 56655433223 237
Q ss_pred CCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHH
Q 006749 548 MFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALK 596 (632)
Q Consensus 548 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 596 (632)
++|+.|+|++|.++......+. .+++|+.|++++++-..+..+.++.
T Consensus 102 ~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~~~C~c~l~~l~ 148 (193)
T 2wfh_A 102 KSLRLLSLHGNDISVVPEGAFN--DLSALSHLAIGANPLYCDCNMQWLS 148 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECCSSCEECSGGGHHHH
T ss_pred CCCCEEECCCCCCCeeChhhhh--cCccccEEEeCCCCeecCCcCHHHH
Confidence 7788888887776653333333 5667778887776644344444433
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.21 E-value=2.4e-07 Score=85.23 Aligned_cols=108 Identities=15% Similarity=0.068 Sum_probs=71.0
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 575 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 575 (632)
+|++|+|+++ .+.......+. .+++|+.|++++ +.++..... ....+++|+.|+|++|.++... ..+. .+++
T Consensus 65 ~L~~L~L~~N-~l~~i~~~~~~--~l~~L~~L~Ls~-N~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~lp-~~~~--~l~~ 136 (229)
T 3e6j_A 65 NLKELYLGSN-QLGALPVGVFD--SLTQLTVLDLGT-NQLTVLPSA-VFDRLVHLKELFMCCNKLTELP-RGIE--RLTH 136 (229)
T ss_dssp TCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSSCCCSCC-TTGG--GCTT
T ss_pred CCcEEECCCC-CCCCcChhhcc--cCCCcCEEECCC-CcCCccChh-HhCcchhhCeEeccCCcccccC-cccc--cCCC
Confidence 5666666653 33332222122 489999999999 577654322 2245899999999999987421 2233 7889
Q ss_pred ccEEeccCCCCcCcchHHHHHHhCCccccccccccCCC
Q 006749 576 LQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSI 613 (632)
Q Consensus 576 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l 613 (632)
|+.|++++|. ++..... ....+++|+.|++++++-.
T Consensus 137 L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 137 LTHLALDQNQ-LKSIPHG-AFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSEEECCSSC-CCCCCTT-TTTTCTTCCEEECTTSCBC
T ss_pred CCEEECCCCc-CCccCHH-HHhCCCCCCEEEeeCCCcc
Confidence 9999999964 7644332 2344678999999995433
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.14 E-value=1.1e-07 Score=84.88 Aligned_cols=137 Identities=16% Similarity=0.090 Sum_probs=82.9
Q ss_pred CeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCC
Q 006749 445 RSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETL 524 (632)
Q Consensus 445 ~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L 524 (632)
+.++++++. ++.... ...++|++|++++ +.++.......+...+ +|++|+++++ .++......+. .+++|
T Consensus 11 ~~l~~s~~~-l~~ip~----~~~~~l~~L~l~~-n~i~~~~~~~~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~--~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPR----DIPLHTTELLLND-NELGRISSDGLFGRLP-HLVKLELKRN-QLTGIEPNAFE--GASHI 80 (192)
T ss_dssp TEEECTTSC-CSSCCS----CCCTTCSEEECCS-CCCCSBCCSCSGGGCT-TCCEEECCSS-CCCCBCTTTTT--TCTTC
T ss_pred CEEEcCCCC-cCcCcc----CCCCCCCEEECCC-CcCCccCCccccccCC-CCCEEECCCC-CCCCcCHhHcC--CcccC
Confidence 678887764 221110 1224889999988 4454322111223333 8899999884 55544333333 47888
Q ss_pred CeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHH
Q 006749 525 ELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPAL 595 (632)
Q Consensus 525 ~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~ 595 (632)
+.|++++ +.++......+ ..+++|+.|+|++|+++......+. .+++|++|++++++...+..+.++
T Consensus 81 ~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~c~c~l~~~ 147 (192)
T 1w8a_A 81 QELQLGE-NKIKEISNKMF-LGLHQLKTLNLYDNQISCVMPGSFE--HLNSLTSLNLASNPFNCNCHLAWF 147 (192)
T ss_dssp CEEECCS-CCCCEECSSSS-TTCTTCCEEECCSSCCCEECTTSST--TCTTCCEEECTTCCBCCSGGGHHH
T ss_pred CEEECCC-CcCCccCHHHh-cCCCCCCEEECCCCcCCeeCHHHhh--cCCCCCEEEeCCCCccCcCcchHH
Confidence 8999888 57765443222 3478889999988887765444444 677888888888763333333443
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.12 E-value=1.2e-06 Score=85.48 Aligned_cols=125 Identities=14% Similarity=0.169 Sum_probs=75.4
Q ss_pred CCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcC
Q 006749 468 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 547 (632)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 547 (632)
.+++.+.+.+ .+....+..+...|+ +|+.|+++++ .++...-.++. .+++|+.|++.+ ++...+-..+ .+|
T Consensus 202 ~~~~~l~~~~--~l~~~~~~~l~~~~~-~L~~l~L~~n-~i~~I~~~aF~--~~~~L~~l~l~~--ni~~I~~~aF-~~~ 272 (329)
T 3sb4_A 202 RDINFLTIEG--KLDNADFKLIRDYMP-NLVSLDISKT-NATTIPDFTFA--QKKYLLKIKLPH--NLKTIGQRVF-SNC 272 (329)
T ss_dssp GGCSEEEEEE--CCCHHHHHHHHHHCT-TCCEEECTTB-CCCEECTTTTT--TCTTCCEEECCT--TCCEECTTTT-TTC
T ss_pred cccceEEEee--eecHHHHHHHHHhcC-CCeEEECCCC-CcceecHhhhh--CCCCCCEEECCc--ccceehHHHh-hCC
Confidence 3444555543 244444555555566 8999999873 34443333333 488999999987 2554433333 458
Q ss_pred CCcC-eEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCcccccc
Q 006749 548 MFLS-YLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLN 606 (632)
Q Consensus 548 ~~L~-~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 606 (632)
++|+ .+.+.+ .++..+-..+. .|++|+.|++.++ +++...-.. ...|++|+.|.
T Consensus 273 ~~L~~~l~l~~-~l~~I~~~aF~--~c~~L~~l~l~~n-~i~~I~~~a-F~~~~~L~~ly 327 (329)
T 3sb4_A 273 GRLAGTLELPA-SVTAIEFGAFM--GCDNLRYVLATGD-KITTLGDEL-FGNGVPSKLIY 327 (329)
T ss_dssp TTCCEEEEECT-TCCEECTTTTT--TCTTEEEEEECSS-CCCEECTTT-TCTTCCCCEEE
T ss_pred hhccEEEEEcc-cceEEchhhhh--CCccCCEEEeCCC-ccCccchhh-hcCCcchhhhc
Confidence 9999 999987 55544444444 7889999999763 364443333 33456677653
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.09 E-value=1.5e-06 Score=77.35 Aligned_cols=110 Identities=20% Similarity=0.140 Sum_probs=70.0
Q ss_pred CCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhc
Q 006749 441 NCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLH 520 (632)
Q Consensus 441 ~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 520 (632)
.++|++|++++|. ++... .....+++|+.|++++ +.++..... .+...+ +|++|+|+++ .++......+. .
T Consensus 30 ~~~l~~L~L~~n~-i~~ip--~~~~~l~~L~~L~Ls~-N~i~~i~~~-~f~~l~-~L~~L~Ls~N-~l~~i~~~~f~--~ 100 (193)
T 2wfh_A 30 PRDVTELYLDGNQ-FTLVP--KELSNYKHLTLIDLSN-NRISTLSNQ-SFSNMT-QLLTLILSYN-RLRCIPPRTFD--G 100 (193)
T ss_dssp CTTCCEEECCSSC-CCSCC--GGGGGCTTCCEEECCS-SCCCCCCTT-TTTTCT-TCCEEECCSS-CCCBCCTTTTT--T
T ss_pred CCCCCEEECCCCc-CchhH--HHhhcccCCCEEECCC-CcCCEeCHh-HccCCC-CCCEEECCCC-ccCEeCHHHhC--C
Confidence 4689999998875 33221 2234568999999987 444422111 122233 8999999884 56554433333 4
Q ss_pred CCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCC
Q 006749 521 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAIT 561 (632)
Q Consensus 521 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~ 561 (632)
+++|+.|++++ +.++......+ ..+++|+.|+|++|++.
T Consensus 101 l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 101 LKSLRLLSLHG-NDISVVPEGAF-NDLSALSHLAIGANPLY 139 (193)
T ss_dssp CTTCCEEECCS-SCCCBCCTTTT-TTCTTCCEEECCSSCEE
T ss_pred CCCCCEEECCC-CCCCeeChhhh-hcCccccEEEeCCCCee
Confidence 78999999988 57765432222 34888999999998764
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.07 E-value=1e-06 Score=78.48 Aligned_cols=130 Identities=15% Similarity=0.153 Sum_probs=82.1
Q ss_pred cEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCc
Q 006749 418 KSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGL 497 (632)
Q Consensus 418 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L 497 (632)
+.++++++ .++.+.. ...++|++|++++|. ++..........+++|++|++++ +.++.... ..+...+ +|
T Consensus 11 ~~l~~s~~-~l~~ip~-----~~~~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~-~~~~~l~-~L 80 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPR-----DIPLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKR-NQLTGIEP-NAFEGAS-HI 80 (192)
T ss_dssp TEEECTTS-CCSSCCS-----CCCTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCS-SCCCCBCT-TTTTTCT-TC
T ss_pred CEEEcCCC-CcCcCcc-----CCCCCCCEEECCCCc-CCccCCccccccCCCCCEEECCC-CCCCCcCH-hHcCCcc-cC
Confidence 56666663 2333321 124589999999985 33222211234569999999998 45543211 1122333 89
Q ss_pred cEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCCh
Q 006749 498 VKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD 562 (632)
Q Consensus 498 ~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 562 (632)
++|+++++ .++......+. .+++|+.|++++ +.++......+ ..+++|+.|+|++|.+..
T Consensus 81 ~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 81 QELQLGEN-KIKEISNKMFL--GLHQLKTLNLYD-NQISCVMPGSF-EHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CEEECCSC-CCCEECSSSST--TCTTCCEEECCS-SCCCEECTTSS-TTCTTCCEEECTTCCBCC
T ss_pred CEEECCCC-cCCccCHHHhc--CCCCCCEEECCC-CcCCeeCHHHh-hcCCCCCEEEeCCCCccC
Confidence 99999984 66654433333 479999999998 67775433333 348999999999998764
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.04 E-value=6.4e-07 Score=78.66 Aligned_cols=127 Identities=11% Similarity=0.094 Sum_probs=66.4
Q ss_pred CCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCC
Q 006749 444 LRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSET 523 (632)
Q Consensus 444 L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~ 523 (632)
.+.++++++. +.... ....++|++|++++ +.++... ...+...+ +|++|+++++ .++......+. .+++
T Consensus 9 ~~~l~~~~~~-l~~~p----~~~~~~l~~L~l~~-n~l~~~~-~~~~~~l~-~L~~L~l~~n-~l~~~~~~~~~--~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVP----TGIPSSATRLELES-NKLQSLP-HGVFDKLT-QLTKLSLSQN-QIQSLPDGVFD--KLTK 77 (177)
T ss_dssp TTEEECCSSC-CSSCC----TTCCTTCSEEECCS-SCCCCCC-TTTTTTCT-TCSEEECCSS-CCCCCCTTTTT--TCTT
T ss_pred CCEEEecCCC-CccCC----CCCCCCCcEEEeCC-CcccEeC-HHHhcCcc-cccEEECCCC-cceEeChhHcc--CCCc
Confidence 4566666653 22111 11236788888877 3343211 11112223 6777777764 44432222222 3677
Q ss_pred CCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCC
Q 006749 524 LELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 585 (632)
Q Consensus 524 L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 585 (632)
|+.|++++ +.++..... ....+++|+.|++++|.++......+. .+++|++|++++|+
T Consensus 78 L~~L~l~~-N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 78 LTILYLHE-NKLQSLPNG-VFDKLTQLKELALDTNQLKSVPDGIFD--RLTSLQKIWLHTNP 135 (177)
T ss_dssp CCEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred cCEEECCC-CCccccCHH-HhhCCcccCEEECcCCcceEeCHHHhc--CCcccCEEEecCCC
Confidence 77777776 455543221 123367777777777776643322222 56677777777755
No 140
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.01 E-value=1.6e-07 Score=92.69 Aligned_cols=207 Identities=13% Similarity=0.060 Sum_probs=121.8
Q ss_pred CCCCeEecccCCCcchhhHHHHHhcccccccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcC
Q 006749 388 GSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLC 467 (632)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~ 467 (632)
+++++|+++++. ++.... .....+++|++|+++++...+.+.. ..+..++++.++.+.++..+...... ....+
T Consensus 30 ~~l~~L~Ls~N~-i~~i~~--~~f~~l~~L~~L~Ls~N~i~~~i~~--~~f~~L~~l~~~l~~~~N~l~~l~~~-~f~~l 103 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQK--GAFSGFGDLEKIEISQNDVLEVIEA--DVFSNLPKLHEIRIEKANNLLYINPE-AFQNL 103 (350)
T ss_dssp TTCSEEEEESCC-CSEECT--TSSTTCTTCCEEEEECCTTCCEECT--TSBCSCTTCCEEEEEEETTCCEECTT-SBCCC
T ss_pred CCCCEEEccCCc-CCCcCH--HHHcCCCCCCEEECcCCCCCCccCh--hHhhcchhhhhhhcccCCcccccCch-hhhhc
Confidence 679999998854 443221 1112348999999999775554422 23456778777665554444432222 22356
Q ss_pred CCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcC
Q 006749 468 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 547 (632)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 547 (632)
++|++|++++ +.+....-.... .. .++..|++.++..+.......+.. ....++.|++++ +.++...... ...
T Consensus 104 ~~L~~L~l~~-n~l~~~~~~~~~-~~-~~l~~l~l~~~~~i~~l~~~~f~~-~~~~l~~L~L~~-N~i~~i~~~~--f~~ 176 (350)
T 4ay9_X 104 PNLQYLLISN-TGIKHLPDVHKI-HS-LQKVLLDIQDNINIHTIERNSFVG-LSFESVILWLNK-NGIQEIHNSA--FNG 176 (350)
T ss_dssp TTCCEEEEEE-ECCSSCCCCTTC-CB-SSCEEEEEESCTTCCEECTTSSTT-SBSSCEEEECCS-SCCCEECTTS--STT
T ss_pred cccccccccc-cccccCCchhhc-cc-chhhhhhhccccccccccccchhh-cchhhhhhcccc-ccccCCChhh--ccc
Confidence 9999999998 344321111111 11 267888887766665443332222 234688999988 6776533221 135
Q ss_pred CCcCeEeccCC-CCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCccccccccccCCCC
Q 006749 548 MFLSYLDVSKC-AITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSIN 614 (632)
Q Consensus 548 ~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 614 (632)
.+|++|++.++ .++......+. .+++|+.|++++|. ++.... ....+|+.|.+.+|++++
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~--~l~~L~~LdLs~N~-l~~lp~----~~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFH--GASGPVILDISRTR-IHSLPS----YGLENLKKLRARSTYNLK 237 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTT--TEECCSEEECTTSC-CCCCCS----SSCTTCCEEECTTCTTCC
T ss_pred cchhHHhhccCCcccCCCHHHhc--cCcccchhhcCCCC-cCccCh----hhhccchHhhhccCCCcC
Confidence 78999999864 45443323333 67799999999964 754322 224457777666666554
No 141
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.01 E-value=1.9e-06 Score=80.07 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=37.4
Q ss_pred CCCCcCCCChHHHHHHHccCCCccchh-hHHHHHHHHHHHHhc
Q 006749 46 NQPSIDVLPDECLYEIFRRLPSGKERS-FAACVSKKWLMMLTS 87 (632)
Q Consensus 46 ~~~~~~~LP~Eil~~If~~L~~~~d~~-~~~~Vcr~W~~~~~~ 87 (632)
....+..||+||+..||+||| .++++ ++++|||+|++++..
T Consensus 47 ~~~~~~~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~~~ 88 (297)
T 2e31_A 47 AVEYLAELPEPLLLRVLAELP-ATELVQACRLVCLRWKELVDG 88 (297)
T ss_dssp CCCCTTSSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHHTS
T ss_pred cccChhhCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHhcC
Confidence 346789999999999999999 99999 999999999998753
No 142
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.95 E-value=1.8e-06 Score=78.91 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=34.8
Q ss_pred CcCCCChHHHHHHHccCCCccchhhHHHHHHHHHHHHh
Q 006749 49 SIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLT 86 (632)
Q Consensus 49 ~~~~LP~Eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~ 86 (632)
.|..||+||+.+||+||+ ++|++++++|||+|+.++.
T Consensus 4 ~l~~LP~ei~l~IlsfL~-p~DL~~l~~vcr~Wr~la~ 40 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLS-PHDLCQLGSTNHYWNETVR 40 (312)
T ss_dssp HHHHSCHHHHHHHHHTSC-HHHHHHHHTTCHHHHHHHT
T ss_pred hhHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhc
Confidence 478899999999999999 9999999999999999874
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.95 E-value=1.4e-06 Score=77.98 Aligned_cols=39 Identities=18% Similarity=0.067 Sum_probs=17.3
Q ss_pred CCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCC
Q 006749 521 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAI 560 (632)
Q Consensus 521 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i 560 (632)
+++|+.|++++ +.+++.........+++|+.|++++|.+
T Consensus 114 l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 114 LVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 44555555555 3444322211122355555555555544
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.92 E-value=8.4e-06 Score=79.54 Aligned_cols=102 Identities=19% Similarity=0.142 Sum_probs=52.2
Q ss_pred CCcceEEecCccccCccChhhHHHHhhcCCCCCeEeecCCCCCCchhHHHHHHhCCCCCEeecCCCCCCCHHHHHHHHhh
Q 006749 149 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 228 (632)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 228 (632)
.++++|.+.+ .+....+..+...+++|+.|+|+++ .+...... ...++.++.+.+.. ..+.+ ..+.+
T Consensus 25 ~~l~~L~l~g-----~i~~~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~--~~~~~~~~~~~~~~-~~I~~----~aF~~ 91 (329)
T 3sb4_A 25 NSITHLTLTG-----KLNAEDFRHLRDEFPSLKVLDISNA-EIKMYSGK--AGTYPNGKFYIYMA-NFVPA----YAFSN 91 (329)
T ss_dssp HHCSEEEEEE-----EECHHHHHHHHHSCTTCCEEEEEEE-EECCEEES--SSSSGGGCCEEECT-TEECT----TTTEE
T ss_pred CceeEEEEec-----cccHHHHHHHHHhhccCeEEecCcc-eeEEecCc--cccccccccccccc-cccCH----HHhcc
Confidence 4777888876 3555566666544778888888764 23200000 00112222333322 12222 22345
Q ss_pred --------CCCCcEEeccCCCCCCchHHHHHhhcCCCCcEEEccCC
Q 006749 229 --------CPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDC 266 (632)
Q Consensus 229 --------l~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 266 (632)
|++|++|++.. .+....-.++.. |++|++|++.++
T Consensus 92 ~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~-~~~L~~l~l~~n 134 (329)
T 3sb4_A 92 VVNGVTKGKQTLEKVILSE--KIKNIEDAAFKG-CDNLKICQIRKK 134 (329)
T ss_dssp EETTEEEECTTCCC-CBCT--TCCEECTTTTTT-CTTCCEEEBCCS
T ss_pred cccccccccCCCcEEECCc--cccchhHHHhhc-CcccceEEcCCC
Confidence 77888888775 344333333443 778888887654
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.86 E-value=2.7e-06 Score=76.09 Aligned_cols=126 Identities=24% Similarity=0.163 Sum_probs=82.2
Q ss_pred cCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHh
Q 006749 466 LCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGN 545 (632)
Q Consensus 466 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 545 (632)
.+++|++|+++++ .++. +. .+..++ +|+.|++++| .++... .... .+++|+.|++++ +.++... .+.
T Consensus 46 ~l~~L~~L~ls~n-~l~~--l~-~~~~l~-~L~~L~l~~n-~l~~l~--~~~~-~~~~L~~L~L~~-N~l~~l~--~~~- 112 (198)
T 1ds9_A 46 TLKACKHLALSTN-NIEK--IS-SLSGME-NLRILSLGRN-LIKKIE--NLDA-VADTLEELWISY-NQIASLS--GIE- 112 (198)
T ss_dssp HTTTCSEEECSEE-EESC--CC-CHHHHT-TCCEEEEEEE-EECSCS--SHHH-HHHHCSEEEEEE-EECCCHH--HHH-
T ss_pred cCCCCCEEECCCC-CCcc--cc-ccccCC-CCCEEECCCC-Cccccc--chhh-cCCcCCEEECcC-CcCCcCC--ccc-
Confidence 3578888888763 3332 11 222333 7888888775 443221 1222 357999999999 4777643 343
Q ss_pred cCCCcCeEeccCCCCChhHH-HhhhhhccCCccEEeccCCCCcCcch---------HHHHHHhCCccccccc
Q 006749 546 NCMFLSYLDVSKCAITDMGI-SALSHAEQLNLQVLSLSSCSEVSNKS---------MPALKKLGKTLVGLNL 607 (632)
Q Consensus 546 ~~~~L~~L~L~~~~i~~~~~-~~l~~~~~~~L~~L~l~~c~~l~~~~---------~~~~~~~~~~L~~L~l 607 (632)
.+++|+.|++++|.+++... ..+. .+++|++|++++|+ ++... .......+++|+.|+-
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~--~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLA--ALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHT--TTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred cCCCCCEEECCCCcCCchhHHHHHh--cCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEECC
Confidence 48999999999999987443 4555 78999999999976 53321 1223456778999983
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.78 E-value=6.6e-06 Score=72.08 Aligned_cols=112 Identities=14% Similarity=0.061 Sum_probs=65.6
Q ss_pred CCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhc
Q 006749 441 NCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLH 520 (632)
Q Consensus 441 ~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 520 (632)
.++|++|+++++. ++..... ....+++|++|++++ +.++.... ..+...+ +|+.|+++++ .++......+. .
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~-n~l~~~~~-~~~~~l~-~L~~L~l~~N-~l~~~~~~~~~--~ 98 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLPHG-VFDKLTQLTKLSLSQ-NQIQSLPD-GVFDKLT-KLTILYLHEN-KLQSLPNGVFD--K 98 (177)
T ss_dssp CTTCSEEECCSSC-CCCCCTT-TTTTCTTCSEEECCS-SCCCCCCT-TTTTTCT-TCCEEECCSS-CCCCCCTTTTT--T
T ss_pred CCCCcEEEeCCCc-ccEeCHH-HhcCcccccEEECCC-CcceEeCh-hHccCCC-ccCEEECCCC-CccccCHHHhh--C
Confidence 4688888888875 3321111 123457888888887 34432111 1122333 7888888874 55543322222 3
Q ss_pred CCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCCh
Q 006749 521 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD 562 (632)
Q Consensus 521 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 562 (632)
+++|+.|++++ +.++.... .....+++|+.|++++|++..
T Consensus 99 l~~L~~L~l~~-N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 99 LTQLKELALDT-NQLKSVPD-GIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CTTCCEEECCS-SCCSCCCT-TTTTTCTTCCEEECCSSCBCC
T ss_pred CcccCEEECcC-CcceEeCH-HHhcCCcccCEEEecCCCeec
Confidence 67888888887 46654332 222347888888888887654
No 147
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.69 E-value=1.9e-05 Score=82.70 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=60.1
Q ss_pred CCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHH-HHHHHh
Q 006749 467 CPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDAS-LVAIGN 545 (632)
Q Consensus 467 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~-~~~l~~ 545 (632)
+++|+.|++++ +.++ .+...+..++ +|+.|+|+++ .++.. ..+. .+++|+.|++++ +.++... ...+.
T Consensus 462 l~~L~~L~Ls~-N~l~--~lp~~~~~l~-~L~~L~Ls~N-~l~~l--p~l~--~l~~L~~L~Ls~-N~l~~~~~p~~l~- 530 (567)
T 1dce_A 462 LLLVTHLDLSH-NRLR--ALPPALAALR-CLEVLQASDN-ALENV--DGVA--NLPRLQELLLCN-NRLQQSAAIQPLV- 530 (567)
T ss_dssp GTTCCEEECCS-SCCC--CCCGGGGGCT-TCCEEECCSS-CCCCC--GGGT--TCSSCCEEECCS-SCCCSSSTTGGGG-
T ss_pred cccCcEeecCc-cccc--ccchhhhcCC-CCCEEECCCC-CCCCC--cccC--CCCCCcEEECCC-CCCCCCCCcHHHh-
Confidence 35566666655 3333 1111222333 6777777663 45442 2233 478899999988 5776553 33333
Q ss_pred cCCCcCeEeccCCCCChhH--HHhhhhhccCCccEEec
Q 006749 546 NCMFLSYLDVSKCAITDMG--ISALSHAEQLNLQVLSL 581 (632)
Q Consensus 546 ~~~~L~~L~L~~~~i~~~~--~~~l~~~~~~~L~~L~l 581 (632)
.+++|+.|+|++|+++... ...+. ..+|+|+.|++
T Consensus 531 ~l~~L~~L~L~~N~l~~~~~~~~~l~-~~lp~L~~L~l 567 (567)
T 1dce_A 531 SCPRLVLLNLQGNSLCQEEGIQERLA-EMLPSVSSILT 567 (567)
T ss_dssp GCTTCCEEECTTSGGGGSSSCTTHHH-HHCTTCSEEEC
T ss_pred cCCCCCEEEecCCcCCCCccHHHHHH-HHCcccCccCC
Confidence 4899999999999876531 22222 35788888864
No 148
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.64 E-value=1.2e-05 Score=82.71 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=39.7
Q ss_pred ccCCCCCcCCCChHHHHHHHccCCCccchhhHHHHHHHHHHHHhc
Q 006749 43 EFENQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTS 87 (632)
Q Consensus 43 ~~~~~~~~~~LP~Eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 87 (632)
+.-+.|.+..||+||+.+||+||+ .+|+.++++|||+|++++..
T Consensus 8 ~~~~~d~~~~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 8 DNLKRDLITSLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp -CCCCCHHHHSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHTT
T ss_pred cccccCChHHCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHcC
Confidence 345678999999999999999999 99999999999999998754
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.49 E-value=1.9e-05 Score=68.54 Aligned_cols=83 Identities=14% Similarity=0.074 Sum_probs=47.7
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 575 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 575 (632)
+|+.|+++++ .++......+. .+++|+.|++++ ++++...... ...+++|+.|+|++|+++......+. .+++
T Consensus 31 ~l~~L~L~~N-~i~~~~~~~~~--~l~~L~~L~Ls~-N~l~~l~~~~-f~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~ 103 (170)
T 3g39_A 31 TTQVLYLYDN-QITKLEPGVFD--RLTQLTRLDLDN-NQLTVLPAGV-FDKLTQLTQLSLNDNQLKSIPRGAFD--NLKS 103 (170)
T ss_dssp TCSEEECCSS-CCCCCCTTTTT--TCTTCSEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTT--TCTT
T ss_pred CCcEEEcCCC-cCCccChhhhc--CcccCCEEECCC-CCcCccChhh-ccCCCCCCEEECCCCccCEeCHHHhc--CCCC
Confidence 5666666552 44333222222 367777777777 4665433222 23477788888888776653333333 5667
Q ss_pred ccEEeccCCC
Q 006749 576 LQVLSLSSCS 585 (632)
Q Consensus 576 L~~L~l~~c~ 585 (632)
|++|+|++++
T Consensus 104 L~~L~L~~N~ 113 (170)
T 3g39_A 104 LTHIWLLNNP 113 (170)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEeCCCC
Confidence 8888887765
No 150
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.48 E-value=1.6e-05 Score=86.07 Aligned_cols=117 Identities=20% Similarity=0.140 Sum_probs=59.3
Q ss_pred CCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHH
Q 006749 438 LSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALA 517 (632)
Q Consensus 438 ~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 517 (632)
+..+++|+.|++++|... ... ..+. .+++|++|+|++ +.++ .+...+..++ +|+.|+|+++ .++.. ...+.
T Consensus 220 ~~~l~~L~~L~Ls~n~l~-~l~-~~~~-~l~~L~~L~Ls~-N~l~--~lp~~~~~l~-~L~~L~Ls~N-~l~~l-p~~~~ 290 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF-NIS-ANIF-KYDFLTRLYLNG-NSLT--ELPAEIKNLS-NLRVLDLSHN-RLTSL-PAELG 290 (727)
T ss_dssp --CCCCCCEEECTTSCCS-CCC-GGGG-GCCSCSCCBCTT-SCCS--CCCGGGGGGT-TCCEEECTTS-CCSSC-CSSGG
T ss_pred hccCCCCcEEECCCCCCC-CCC-hhhc-CCCCCCEEEeeC-CcCc--ccChhhhCCC-CCCEEeCcCC-cCCcc-Chhhc
Confidence 455677777777776522 111 1111 457777777776 3443 1112222333 6777777764 44421 11122
Q ss_pred hhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhh
Q 006749 518 RLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISAL 568 (632)
Q Consensus 518 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l 568 (632)
.+++|+.|+|++ +.++.... . ...+++|+.|+|++|.++......+
T Consensus 291 --~l~~L~~L~L~~-N~l~~lp~-~-~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 291 --SCFQLKYFYFFD-NMVTTLPW-E-FGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp --GGTTCSEEECCS-SCCCCCCS-S-TTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred --CCCCCCEEECCC-CCCCccCh-h-hhcCCCccEEeCCCCccCCCChHHH
Confidence 366777777766 35543211 1 2346677777777777665444433
No 151
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.42 E-value=3.7e-05 Score=78.36 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=38.7
Q ss_pred cCCCCCcCCCChH----HHHHHHccCCCccchhhHHHHHHHHHHHHh
Q 006749 44 FENQPSIDVLPDE----CLYEIFRRLPSGKERSFAACVSKKWLMMLT 86 (632)
Q Consensus 44 ~~~~~~~~~LP~E----il~~If~~L~~~~d~~~~~~Vcr~W~~~~~ 86 (632)
.-..|.+..||+| |+.+||+||+ .+|+.++++|||+|++++.
T Consensus 5 ~~~~d~~~~lp~e~~~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 5 MLQRDFITALPARGLDHIAENILSYLD-AKSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp CSCCCHHHHTGGGTCHHHHHHHHTTCC-HHHHHHHHHHCHHHHHHHH
T ss_pred hhhcChHHHCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhc
Confidence 3467899999999 9999999999 9999999999999999874
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.41 E-value=3.2e-05 Score=67.29 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=43.0
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 575 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 575 (632)
+|+.|+++++ .++......+. .+++|+.|++++ ++++..... ....+++|+.|+|++|+++......+. .+++
T Consensus 34 ~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~i~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~--~l~~ 106 (174)
T 2r9u_A 34 DKQRLWLNNN-QITKLEPGVFD--HLVNLQQLYFNS-NKLTAIPTG-VFDKLTQLTQLDLNDNHLKSIPRGAFD--NLKS 106 (174)
T ss_dssp TCSEEECCSS-CCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTT
T ss_pred CCcEEEeCCC-CccccCHHHhc--CCcCCCEEECCC-CCCCccChh-HhCCcchhhEEECCCCccceeCHHHhc--cccC
Confidence 4555555542 33322222122 356677777766 455543221 123467777777777766543222233 5667
Q ss_pred ccEEeccCCC
Q 006749 576 LQVLSLSSCS 585 (632)
Q Consensus 576 L~~L~l~~c~ 585 (632)
|+.|++++++
T Consensus 107 L~~L~L~~N~ 116 (174)
T 2r9u_A 107 LTHIYLYNNP 116 (174)
T ss_dssp CSEEECCSSC
T ss_pred CCEEEeCCCC
Confidence 7777777755
No 153
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.39 E-value=6.3e-05 Score=76.86 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=38.8
Q ss_pred cCCCCCcCCCChHHHHHHHccCCCccchhhHHHHHHHHHHHHh
Q 006749 44 FENQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLT 86 (632)
Q Consensus 44 ~~~~~~~~~LP~Eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~ 86 (632)
....|.+..||+|++.+||+||+ .+|+.++++|||+|++++.
T Consensus 13 ~~~~d~~~~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 13 QFQRDFISLLPKELALYVLSFLE-PKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCCCSTTTSSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHHHT
T ss_pred cccCChhHHCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhhcC
Confidence 44678999999999999999999 9999999999999999874
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.39 E-value=3.4e-05 Score=66.87 Aligned_cols=106 Identities=22% Similarity=0.153 Sum_probs=70.9
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 575 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 575 (632)
..+.+++++. .++..... -.++|+.|++++ +.++......+. .+++|+.|+|++|+++......+. .+++
T Consensus 10 ~~~~l~~s~n-~l~~ip~~-----~~~~l~~L~L~~-N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~f~--~l~~ 79 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTG-----IPTTTQVLYLYD-NQITKLEPGVFD-RLTQLTRLDLDNNQLTVLPAGVFD--KLTQ 79 (170)
T ss_dssp ETTEEECTTS-CCSSCCSC-----CCTTCSEEECCS-SCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCTTTTT--TCTT
T ss_pred CCCEEEeCCC-CcCccCcc-----CCCCCcEEEcCC-CcCCccChhhhc-CcccCCEEECCCCCcCccChhhcc--CCCC
Confidence 3456666652 33332110 247899999998 677765433333 489999999999998764443344 7889
Q ss_pred ccEEeccCCCCcCcchHHHHHHhCCccccccccccCCCC
Q 006749 576 LQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSIN 614 (632)
Q Consensus 576 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 614 (632)
|++|+|+++. ++...... ...+++|+.|++++ +.++
T Consensus 80 L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~-N~~~ 115 (170)
T 3g39_A 80 LTQLSLNDNQ-LKSIPRGA-FDNLKSLTHIWLLN-NPWD 115 (170)
T ss_dssp CCEEECCSSC-CCCCCTTT-TTTCTTCCEEECCS-SCBC
T ss_pred CCEEECCCCc-cCEeCHHH-hcCCCCCCEEEeCC-CCCC
Confidence 9999999964 75433322 34466799999999 4444
No 155
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.31 E-value=5.5e-05 Score=81.95 Aligned_cols=130 Identities=20% Similarity=0.244 Sum_probs=67.5
Q ss_pred hcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHH
Q 006749 465 KLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIG 544 (632)
Q Consensus 465 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 544 (632)
..+++|+.|+|+++ .+.. +..-+..++ +|++|+|+++ .++.. ...+. .+++|+.|+|++ +.++.. ...+
T Consensus 221 ~~l~~L~~L~Ls~n-~l~~--l~~~~~~l~-~L~~L~Ls~N-~l~~l-p~~~~--~l~~L~~L~Ls~-N~l~~l-p~~~- 289 (727)
T 4b8c_D 221 YDDQLWHALDLSNL-QIFN--ISANIFKYD-FLTRLYLNGN-SLTEL-PAEIK--NLSNLRVLDLSH-NRLTSL-PAEL- 289 (727)
T ss_dssp -CCCCCCEEECTTS-CCSC--CCGGGGGCC-SCSCCBCTTS-CCSCC-CGGGG--GGTTCCEEECTT-SCCSSC-CSSG-
T ss_pred ccCCCCcEEECCCC-CCCC--CChhhcCCC-CCCEEEeeCC-cCccc-Chhhh--CCCCCCEEeCcC-CcCCcc-Chhh-
Confidence 34577888888773 3321 111011233 7777777774 44421 12222 467777777777 456522 1122
Q ss_pred hcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCccccccccc
Q 006749 545 NNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQN 609 (632)
Q Consensus 545 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 609 (632)
..+++|+.|+|++|.++... ..+. .+++|+.|+|++|. ++......+......+..|++++
T Consensus 290 ~~l~~L~~L~L~~N~l~~lp-~~~~--~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~ 350 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVTTLP-WEFG--NLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRD 350 (727)
T ss_dssp GGGTTCSEEECCSSCCCCCC-SSTT--SCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEECCCCCCCccC-hhhh--cCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhcc
Confidence 34777777777777765321 1233 56677777777754 55433333332222223345554
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.30 E-value=4.8e-05 Score=66.16 Aligned_cols=85 Identities=16% Similarity=0.117 Sum_probs=61.4
Q ss_pred CCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCC
Q 006749 521 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGK 600 (632)
Q Consensus 521 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 600 (632)
.++|+.|++++ +.++......+ ..+++|+.|+|++|+++......+. .+++|++|+|++|. ++.... .....++
T Consensus 32 ~~~L~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~i~~~~~~--~l~~L~~L~L~~N~-l~~l~~-~~~~~l~ 105 (174)
T 2r9u_A 32 PTDKQRLWLNN-NQITKLEPGVF-DHLVNLQQLYFNSNKLTAIPTGVFD--KLTQLTQLDLNDNH-LKSIPR-GAFDNLK 105 (174)
T ss_dssp CTTCSEEECCS-SCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSC-CCCCCT-TTTTTCT
T ss_pred CCCCcEEEeCC-CCccccCHHHh-cCCcCCCEEECCCCCCCccChhHhC--CcchhhEEECCCCc-cceeCH-HHhcccc
Confidence 36899999998 67765433333 3589999999999998764333333 78899999999964 754322 2234467
Q ss_pred ccccccccccC
Q 006749 601 TLVGLNLQNCN 611 (632)
Q Consensus 601 ~L~~L~l~~c~ 611 (632)
+|+.|++++++
T Consensus 106 ~L~~L~L~~N~ 116 (174)
T 2r9u_A 106 SLTHIYLYNNP 116 (174)
T ss_dssp TCSEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 89999999944
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.13 E-value=2.5e-05 Score=78.34 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=41.2
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 575 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 575 (632)
+|+.+.+.. .+...+-.++. .+.+|+.++|.. .++..+-..+ .+|.+|+.+.+..+ ++..+-..+. .|++
T Consensus 298 ~L~~i~l~~--~i~~I~~~aF~--~c~~L~~i~lp~--~v~~I~~~aF-~~c~~L~~i~lp~~-l~~I~~~aF~--~C~~ 367 (394)
T 4fs7_A 298 SLTEVKLLD--SVKFIGEEAFE--SCTSLVSIDLPY--LVEEIGKRSF-RGCTSLSNINFPLS-LRKIGANAFQ--GCIN 367 (394)
T ss_dssp TCCEEEECT--TCCEECTTTTT--TCTTCCEECCCT--TCCEECTTTT-TTCTTCCEECCCTT-CCEECTTTBT--TCTT
T ss_pred ccccccccc--ccceechhhhc--CCCCCCEEEeCC--cccEEhHHhc-cCCCCCCEEEECcc-ccEehHHHhh--CCCC
Confidence 666666643 22222112222 467777777754 3433322222 34778888877654 3333333333 6777
Q ss_pred ccEEeccC
Q 006749 576 LQVLSLSS 583 (632)
Q Consensus 576 L~~L~l~~ 583 (632)
|+.+++..
T Consensus 368 L~~i~lp~ 375 (394)
T 4fs7_A 368 LKKVELPK 375 (394)
T ss_dssp CCEEEEEG
T ss_pred CCEEEECC
Confidence 88877765
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.07 E-value=0.0011 Score=61.40 Aligned_cols=84 Identities=18% Similarity=0.213 Sum_probs=58.2
Q ss_pred cCCCCCeeeccCCCCCChH-HHHHHHhcCCCcCeEeccCCCCChh-HHHhhhhhccCCccEEeccCCCCcCc------ch
Q 006749 520 HSETLELLNLDGCRKITDA-SLVAIGNNCMFLSYLDVSKCAITDM-GISALSHAEQLNLQVLSLSSCSEVSN------KS 591 (632)
Q Consensus 520 ~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~~L~~L~l~~c~~l~~------~~ 591 (632)
.+++|+.|+|++ |.++.. ++..+...+++|+.|+|++|.+++. .+..+. .+ +|++|+|.+|+ ++. ..
T Consensus 168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~--~l-~L~~L~L~~Np-l~~~~~~~~~y 242 (267)
T 3rw6_A 168 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK--GL-KLEELWLDGNS-LCDTFRDQSTY 242 (267)
T ss_dssp HCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT--TS-CCSEEECTTST-TGGGCSSHHHH
T ss_pred hCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc--cC-CcceEEccCCc-CccccCcchhH
Confidence 588999999998 677652 2333444689999999999998764 333333 33 89999999977 543 12
Q ss_pred HHHHHHhCCcccccccc
Q 006749 592 MPALKKLGKTLVGLNLQ 608 (632)
Q Consensus 592 ~~~~~~~~~~L~~L~l~ 608 (632)
...+...+|+|+.||=.
T Consensus 243 ~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHCTTCCEESSC
T ss_pred HHHHHHHCcccCeECCc
Confidence 23456677888888743
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.91 E-value=0.00019 Score=70.53 Aligned_cols=95 Identities=18% Similarity=0.105 Sum_probs=60.8
Q ss_pred CccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCC
Q 006749 496 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 575 (632)
Q Consensus 496 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 575 (632)
+|+.|+|++++.++......+. .+++|+.|+|++ ++++......+ ..+++|+.|+|++|+++......+. .+ .
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~--~l~~L~~L~l~~-N~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~--~~-~ 104 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLR--GLGELRNLTIVK-SGLRFVAPDAF-HFTPRLSRLNLSFNALESLSWKTVQ--GL-S 104 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCS-SCCCEECTTGG-GSCSCCCEEECCSSCCSCCCSTTTC--SC-C
T ss_pred CeeEEEccCCCCCCCcChhHhc--cccCCCEEECCC-CccceeCHHHh-cCCcCCCEEeCCCCccceeCHHHcc--cC-C
Confidence 6899999864566654433333 478899999988 57766443333 3488899999999887753322222 23 3
Q ss_pred ccEEeccCCCCcCcchHHHHHH
Q 006749 576 LQVLSLSSCSEVSNKSMPALKK 597 (632)
Q Consensus 576 L~~L~l~~c~~l~~~~~~~~~~ 597 (632)
|+.|+|.+++.-.+..+.++..
T Consensus 105 L~~l~l~~N~~~c~c~l~~~~~ 126 (347)
T 2ifg_A 105 LQELVLSGNPLHCSCALRWLQR 126 (347)
T ss_dssp CCEEECCSSCCCCCGGGHHHHH
T ss_pred ceEEEeeCCCccCCCccHHHHH
Confidence 8888888866433444455444
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.66 E-value=0.00059 Score=66.93 Aligned_cols=89 Identities=15% Similarity=0.050 Sum_probs=57.4
Q ss_pred cCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHh
Q 006749 466 LCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGN 545 (632)
Q Consensus 466 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 545 (632)
.+++|++|+|++.+.++...- ..+...+ +|+.|+|+++ .++......+. .+++|+.|+|++ |.++..... +..
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~-~~~~~l~-~L~~L~l~~N-~l~~~~~~~~~--~l~~L~~L~l~~-N~l~~~~~~-~~~ 101 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLEL-RDLRGLG-ELRNLTIVKS-GLRFVAPDAFH--FTPRLSRLNLSF-NALESLSWK-TVQ 101 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECG-GGSCSCC-CCSEEECCSS-CCCEECTTGGG--SCSCCCEEECCS-SCCSCCCST-TTC
T ss_pred CCCCeeEEEccCCCCCCCcCh-hHhcccc-CCCEEECCCC-ccceeCHHHhc--CCcCCCEEeCCC-CccceeCHH-Hcc
Confidence 447899999986455543211 1122333 8999999984 67654444333 489999999998 677653321 222
Q ss_pred cCCCcCeEeccCCCCCh
Q 006749 546 NCMFLSYLDVSKCAITD 562 (632)
Q Consensus 546 ~~~~L~~L~L~~~~i~~ 562 (632)
.++ |+.|+|.+|.+..
T Consensus 102 ~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCC-CCEEECCSSCCCC
T ss_pred cCC-ceEEEeeCCCccC
Confidence 233 9999999998763
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.99 E-value=0.011 Score=54.55 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=28.8
Q ss_pred HhCCCCCEeecCCCCCCCH-HHHHHHHhhCCCCcEEeccCCCCCCc-hHHHHHhhcCCCCcEEEccCCC
Q 006749 201 KECHLLEKLELCHCPSISN-ESLIAIAENCPNLTSLNIESCSKIGN-DGLQAIGKFCRNLQCLSIKDCP 267 (632)
Q Consensus 201 ~~~~~L~~L~L~~~~~~~~-~~l~~l~~~l~~L~~L~L~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~ 267 (632)
..+++|++|+|++ +.++. ..++.....+++|+.|+|+++ .+.. ..+..+.. + +|++|.+.++.
T Consensus 167 ~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~-l-~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKG-L-KLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTT-S-CCSEEECTTST
T ss_pred hhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhccc-C-CcceEEccCCc
Confidence 3456666666665 23332 122233344566666666553 2222 12222222 2 56666665544
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.92 E-value=0.00084 Score=66.92 Aligned_cols=237 Identities=9% Similarity=0.130 Sum_probs=125.1
Q ss_pred CcceEeccCCCCCChhHHHHHhhcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccCCCcchhhHHHHHhccccc
Q 006749 337 KLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASK 416 (632)
Q Consensus 337 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 416 (632)
+|+.+.+... +....-..+. . .+|+++.+.. .+...+-. .+..|++|+.+.+.++. ++..+...+ . +.+
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~-~-~~L~~i~lp~--~l~~I~~~-aF~~c~~L~~l~l~~n~-l~~I~~~aF--~-~~~ 204 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFF-N-STVQEIVFPS--TLEQLKED-IFYYCYNLKKADLSKTK-ITKLPASTF--V-YAG 204 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTT-T-CCCCEEECCT--TCCEECSS-TTTTCTTCCEEECTTSC-CSEECTTTT--T-TCC
T ss_pred CccEEEeCCC--ccEECHHhcC-C-CCceEEEeCC--CccEehHH-HhhCcccCCeeecCCCc-ceEechhhE--e-ecc
Confidence 4666666543 2222211222 2 3688888865 23221111 23468999999997532 322221111 1 278
Q ss_pred ccEEeccccCCCCccccccccCCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCC
Q 006749 417 LKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAG 496 (632)
Q Consensus 417 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 496 (632)
|+.+.+... +..+. ...+..+++|+.+.+..+ +....-..+. . .+|+.+.+.+ .++.-+- ..+..|+ +
T Consensus 205 L~~l~lp~~--l~~I~--~~aF~~~~~L~~l~l~~~--l~~I~~~aF~-~-~~L~~i~lp~--~i~~I~~-~aF~~c~-~ 272 (401)
T 4fdw_A 205 IEEVLLPVT--LKEIG--SQAFLKTSQLKTIEIPEN--VSTIGQEAFR-E-SGITTVKLPN--GVTNIAS-RAFYYCP-E 272 (401)
T ss_dssp CSEEECCTT--CCEEC--TTTTTTCTTCCCEECCTT--CCEECTTTTT-T-CCCSEEEEET--TCCEECT-TTTTTCT-T
T ss_pred cCEEEeCCc--hheeh--hhHhhCCCCCCEEecCCC--ccCccccccc-c-CCccEEEeCC--CccEECh-hHhhCCC-C
Confidence 888888642 33332 234567889999998753 2211111122 1 5788888853 3322111 1233455 8
Q ss_pred ccEEecCCCCC-------CChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhh
Q 006749 497 LVKVNLSGCLN-------LTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALS 569 (632)
Q Consensus 497 L~~L~l~~c~~-------l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~ 569 (632)
|+.+.+.+... +...++. .|++|+.+.+.. .+...+-..+ .+|++|+.+.|..+ ++..+...+.
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~-----~c~~L~~l~l~~--~i~~I~~~aF-~~c~~L~~l~lp~~-l~~I~~~aF~ 343 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLE-----GCPKLARFEIPE--SIRILGQGLL-GGNRKVTQLTIPAN-VTQINFSAFN 343 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTT-----TCTTCCEECCCT--TCCEECTTTT-TTCCSCCEEEECTT-CCEECTTSSS
T ss_pred CCEEEeCCccccCCcccEECHHHhh-----CCccCCeEEeCC--ceEEEhhhhh-cCCCCccEEEECcc-ccEEcHHhCC
Confidence 88888866311 2222222 578899888874 4544333222 45889999988554 4433333344
Q ss_pred hhccCCccEEeccCCCCcCcchHHHHHHhCCccccccccc
Q 006749 570 HAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQN 609 (632)
Q Consensus 570 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 609 (632)
.+ +|+.+.+.++. +....-..+.....+++.|.+-.
T Consensus 344 --~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 344 --NT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp --SS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECG
T ss_pred --CC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCH
Confidence 67 89999988853 32222122222334566665543
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.71 E-value=0.00096 Score=66.68 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=55.2
Q ss_pred CCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccc-cCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHH
Q 006749 438 LSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGL-YGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLAL 516 (632)
Q Consensus 438 ~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l 516 (632)
+..+..++.+...... +.. .....|.+|+.+.+... ..+.+.. +..|. +|+.+.+.. .++..+-.++
T Consensus 272 F~~~~~l~~~~~~~~~-i~~----~~F~~~~~L~~i~l~~~i~~I~~~a----F~~c~-~L~~i~lp~--~v~~I~~~aF 339 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVI-VPE----KTFYGCSSLTEVKLLDSVKFIGEEA----FESCT-SLVSIDLPY--LVEEIGKRSF 339 (394)
T ss_dssp TTTCTTCCEEEECSSE-ECT----TTTTTCTTCCEEEECTTCCEECTTT----TTTCT-TCCEECCCT--TCCEECTTTT
T ss_pred cccccccceeccCcee-ecc----ccccccccccccccccccceechhh----hcCCC-CCCEEEeCC--cccEEhHHhc
Confidence 3455666665554321 111 11234677887777531 1122222 23444 788888854 2333222222
Q ss_pred HhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCC
Q 006749 517 ARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKC 558 (632)
Q Consensus 517 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~ 558 (632)
. .|.+|+.+.+.. .++..+-.. ..+|++|+.+.+..+
T Consensus 340 ~--~c~~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 340 R--GCTSLSNINFPL--SLRKIGANA-FQGCINLKKVELPKR 376 (394)
T ss_dssp T--TCTTCCEECCCT--TCCEECTTT-BTTCTTCCEEEEEGG
T ss_pred c--CCCCCCEEEECc--cccEehHHH-hhCCCCCCEEEECCC
Confidence 2 478999998865 244333222 245999999998654
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.69 E-value=0.0018 Score=64.44 Aligned_cols=197 Identities=17% Similarity=0.207 Sum_probs=113.8
Q ss_pred hcCCccceeecCCCCCCChHHHHHHHHhcCCCCeEecccC-CCcchhhHHHHHhcccccccEEeccccCCCCcccccccc
Q 006749 359 KGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEEC-NRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPM 437 (632)
Q Consensus 359 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 437 (632)
..|++|+.+.+..+ .+....-..+ .+.+|+.+.+... ..+....+ ..+++|+.+.+... +..+... .
T Consensus 177 ~~c~~L~~l~l~~n-~l~~I~~~aF--~~~~L~~l~lp~~l~~I~~~aF-----~~~~~L~~l~l~~~--l~~I~~~--a 244 (401)
T 4fdw_A 177 YYCYNLKKADLSKT-KITKLPASTF--VYAGIEEVLLPVTLKEIGSQAF-----LKTSQLKTIEIPEN--VSTIGQE--A 244 (401)
T ss_dssp TTCTTCCEEECTTS-CCSEECTTTT--TTCCCSEEECCTTCCEECTTTT-----TTCTTCCCEECCTT--CCEECTT--T
T ss_pred hCcccCCeeecCCC-cceEechhhE--eecccCEEEeCCchheehhhHh-----hCCCCCCEEecCCC--ccCcccc--c
Confidence 56899999999763 2322111122 2589999998642 11222222 22378999999752 3333222 2
Q ss_pred CCCCCCCCeEeccCCCCCCHHHHHHHhhcCCCCcEEEeccccCCCch----hhHHHHhhccCCccEEecCCCCCCChHHH
Q 006749 438 LSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDV----GIFPLLESCKAGLVKVNLSGCLNLTDEVV 513 (632)
Q Consensus 438 ~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~----~~~~l~~~~~~~L~~L~l~~c~~l~~~~~ 513 (632)
+.. .+|+.+.+... +.... ......|++|+.+.+.+. .+... .-...+..|+ +|+.+.+.. ++....-
T Consensus 245 F~~-~~L~~i~lp~~--i~~I~-~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~-~L~~l~l~~--~i~~I~~ 316 (401)
T 4fdw_A 245 FRE-SGITTVKLPNG--VTNIA-SRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCP-KLARFEIPE--SIRILGQ 316 (401)
T ss_dssp TTT-CCCSEEEEETT--CCEEC-TTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCT-TCCEECCCT--TCCEECT
T ss_pred ccc-CCccEEEeCCC--ccEEC-hhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCc-cCCeEEeCC--ceEEEhh
Confidence 233 68999998553 22111 112346799999999763 22100 1112344565 899999975 3444333
Q ss_pred HHHHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccC-CccEEeccC
Q 006749 514 LALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQL-NLQVLSLSS 583 (632)
Q Consensus 514 ~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~-~L~~L~l~~ 583 (632)
.++. .+++|+.+.|.. .++..+...+ .+| +|+.+.+.++.+....-..+. .++ .++.|.+..
T Consensus 317 ~aF~--~c~~L~~l~lp~--~l~~I~~~aF-~~~-~L~~l~l~~n~~~~l~~~~F~--~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 317 GLLG--GNRKVTQLTIPA--NVTQINFSAF-NNT-GIKEVKVEGTTPPQVFEKVWY--GFPDDITVIRVPA 379 (401)
T ss_dssp TTTT--TCCSCCEEEECT--TCCEECTTSS-SSS-CCCEEEECCSSCCBCCCSSCC--CSCTTCCEEEECG
T ss_pred hhhc--CCCCccEEEECc--cccEEcHHhC-CCC-CCCEEEEcCCCCccccccccc--CCCCCccEEEeCH
Confidence 3333 489999999965 4544333333 357 999999999875442222222 443 678888866
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=84.60 E-value=0.93 Score=36.38 Aligned_cols=37 Identities=14% Similarity=-0.005 Sum_probs=16.6
Q ss_pred CcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCc
Q 006749 549 FLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEV 587 (632)
Q Consensus 549 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l 587 (632)
+|+.|+|++|+|+......+. .+++|+.|+|.+++..
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLD--ALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGG--GCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhh--hccccCEEEecCCCee
Confidence 355555555544432222222 3445555555554433
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=75.54 E-value=0.67 Score=45.47 Aligned_cols=129 Identities=18% Similarity=0.267 Sum_probs=65.9
Q ss_pred CCCCCCCCeEeccCCC-CCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHH
Q 006749 438 LSPNCSLRSLSIRNCP-GFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLAL 516 (632)
Q Consensus 438 ~~~~~~L~~L~l~~~~-~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l 516 (632)
...+.+|+.+.+...- .+.. .....|.+|+.+.+.. .++.-+-. .+..|. +|+.+.+.. .+.......+
T Consensus 213 f~~~~~l~~i~~~~~~~~i~~----~~f~~~~~L~~i~lp~--~v~~I~~~-aF~~~~-~l~~i~l~~--~i~~i~~~aF 282 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTTLGD----GAFYGMKALDEIAIPK--NVTSIGSF-LLQNCT-ALKTLNFYA--KVKTVPYLLC 282 (379)
T ss_dssp TTTCSSCSEEECCTTCCEECT----TTTTTCSSCCEEEECT--TCCEECTT-TTTTCT-TCCEEEECC--CCSEECTTTT
T ss_pred cccccccceeeeccceeEEcc----ccccCCccceEEEcCC--CccEeCcc-ccceee-hhccccccc--cceecccccc
Confidence 3456777877775431 1111 1122467888888854 22211111 122333 677777754 3332222222
Q ss_pred HhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccC
Q 006749 517 ARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSS 583 (632)
Q Consensus 517 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~ 583 (632)
. .+++|+.+.+.+ +.++..+-.. ..+|.+|+.+.|..+ ++..+-..+. .|.+|+.+.+..
T Consensus 283 ~--~c~~L~~i~l~~-~~i~~I~~~a-F~~c~~L~~i~lp~~-l~~I~~~aF~--~C~~L~~i~ip~ 342 (379)
T 4h09_A 283 S--GCSNLTKVVMDN-SAIETLEPRV-FMDCVKLSSVTLPTA-LKTIQVYAFK--NCKALSTISYPK 342 (379)
T ss_dssp T--TCTTCCEEEECC-TTCCEECTTT-TTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCCCCCCT
T ss_pred c--cccccccccccc-cccceehhhh-hcCCCCCCEEEcCcc-ccEEHHHHhh--CCCCCCEEEECC
Confidence 2 477888888865 3443322222 235888888888543 3332222333 667777777754
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=70.48 E-value=0.92 Score=44.76 Aligned_cols=126 Identities=19% Similarity=0.254 Sum_probs=68.7
Q ss_pred hcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHHHhhcCCCCCeeeccCCCCCChHHHHHHH
Q 006749 465 KLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIG 544 (632)
Q Consensus 465 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 544 (632)
..|.+|+.+.+.. .+..-+- ..+..|. .|+.+.+.. .+....-.++. .|.+|+.+.|.. .++..+-.. .
T Consensus 262 ~~c~~L~~i~lp~--~~~~I~~-~aF~~c~-~L~~i~l~~--~i~~I~~~aF~--~c~~L~~i~lp~--~v~~I~~~a-F 330 (394)
T 4gt6_A 262 DSCAYLASVKMPD--SVVSIGT-GAFMNCP-ALQDIEFSS--RITELPESVFA--GCISLKSIDIPE--GITQILDDA-F 330 (394)
T ss_dssp TTCSSCCEEECCT--TCCEECT-TTTTTCT-TCCEEECCT--TCCEECTTTTT--TCTTCCEEECCT--TCCEECTTT-T
T ss_pred eecccccEEeccc--ccceecC-ccccccc-ccccccCCC--cccccCceeec--CCCCcCEEEeCC--cccEehHhH-h
Confidence 3578999998864 2221111 1223454 899998865 33332222222 588999999975 344333222 2
Q ss_pred hcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccCCCCcCcchHHHHHHhCCccccccccc
Q 006749 545 NNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQN 609 (632)
Q Consensus 545 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 609 (632)
.+|.+|+++.|..+ ++..+-..+. .|.+|+.+++.+.. ..... ...+.+|+.+.+..
T Consensus 331 ~~C~~L~~i~ip~s-v~~I~~~aF~--~C~~L~~i~~~~~~----~~~~~-~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 331 AGCEQLERIAIPSS-VTKIPESAFS--NCTALNNIEYSGSR----SQWNA-ISTDSGLQNLPVAP 387 (394)
T ss_dssp TTCTTCCEEEECTT-CCBCCGGGGT--TCTTCCEEEESSCH----HHHHT-CBCCCCC-------
T ss_pred hCCCCCCEEEECcc-cCEEhHhHhh--CCCCCCEEEECCce----eehhh-hhccCCCCEEEeCC
Confidence 45999999999654 4333333344 78899999998732 11221 23456777777654
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=69.32 E-value=1.5 Score=43.19 Aligned_cols=127 Identities=23% Similarity=0.329 Sum_probs=70.7
Q ss_pred cCCCCCCCCeEeccCCC-CCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHH
Q 006749 437 MLSPNCSLRSLSIRNCP-GFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLA 515 (632)
Q Consensus 437 ~~~~~~~L~~L~l~~~~-~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~ 515 (632)
.+..+.+|+.+.+.... .+.. .....|++|+.+.+.. .++.-+- ..+..|. +|+.+.+.. .++..+-.+
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~--~i~~I~~-~aF~~c~-~L~~i~lp~--~v~~I~~~a 329 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSS--RITELPE-SVFAGCI-SLKSIDIPE--GITQILDDA 329 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCT--TCCEECT-TTTTTCT-TCCEEECCT--TCCEECTTT
T ss_pred eeeecccccEEecccccceecC----cccccccccccccCCC--cccccCc-eeecCCC-CcCEEEeCC--cccEehHhH
Confidence 35678899999986532 1111 1123578999999864 2322111 1234555 899999965 333322222
Q ss_pred HHhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCCChhHHHhhhhhccCCccEEeccC
Q 006749 516 LARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSS 583 (632)
Q Consensus 516 l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~l~~ 583 (632)
+. .|.+|+.+.|.. .++..+-.. ..+|++|+.+++.++... ...+. .+..|+.+.+..
T Consensus 330 F~--~C~~L~~i~ip~--sv~~I~~~a-F~~C~~L~~i~~~~~~~~---~~~~~--~~~~L~~i~i~~ 387 (394)
T 4gt6_A 330 FA--GCEQLERIAIPS--SVTKIPESA-FSNCTALNNIEYSGSRSQ---WNAIS--TDSGLQNLPVAP 387 (394)
T ss_dssp TT--TCTTCCEEEECT--TCCBCCGGG-GTTCTTCCEEEESSCHHH---HHTCB--CCCCC-------
T ss_pred hh--CCCCCCEEEECc--ccCEEhHhH-hhCCCCCCEEEECCceee---hhhhh--ccCCCCEEEeCC
Confidence 22 589999999965 344333222 245999999999876422 22333 567788877765
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=60.24 E-value=3.3 Score=33.08 Aligned_cols=36 Identities=14% Similarity=-0.020 Sum_probs=19.1
Q ss_pred CCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCCCC
Q 006749 523 TLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAI 560 (632)
Q Consensus 523 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~i 560 (632)
+|+.|+|++ |+++...... +..+++|+.|+|.+|.+
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~-f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGL-LDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTT-GGGCTTCCEEECCSSCC
T ss_pred CCCEEECCC-CcCCccChhh-hhhccccCEEEecCCCe
Confidence 456666655 4554433222 23366667777766654
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=55.98 E-value=2.4 Score=41.43 Aligned_cols=107 Identities=19% Similarity=0.281 Sum_probs=59.4
Q ss_pred CCCCCCCCeEeccCCC-CCCHHHHHHHhhcCCCCcEEEeccccCCCchhhHHHHhhccCCccEEecCCCCCCChHHHHHH
Q 006749 438 LSPNCSLRSLSIRNCP-GFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLAL 516 (632)
Q Consensus 438 ~~~~~~L~~L~l~~~~-~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l 516 (632)
+..+..|+.+.+...- .+.. .....|.+|+.+.+.. .+...+. ..+..|. +|+.+.+.+. .++...-.++
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~----~aF~~~~~l~~i~l~~--~i~~i~~-~aF~~c~-~L~~i~l~~~-~i~~I~~~aF 306 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGS----FLLQNCTALKTLNFYA--KVKTVPY-LLCSGCS-NLTKVVMDNS-AIETLEPRVF 306 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECT----TTTTTCTTCCEEEECC--CCSEECT-TTTTTCT-TCCEEEECCT-TCCEECTTTT
T ss_pred ccCCccceEEEcCCCccEeCc----cccceeehhccccccc--cceeccc-ccccccc-cccccccccc-ccceehhhhh
Confidence 4567888888886531 1111 1223467888888863 2322111 1233455 8899888652 2332222222
Q ss_pred HhhcCCCCCeeeccCCCCCChHHHHHHHhcCCCcCeEeccCC
Q 006749 517 ARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKC 558 (632)
Q Consensus 517 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~ 558 (632)
. .|.+|+.+.|.. .++..+-..+ .+|++|+.+.+..+
T Consensus 307 ~--~c~~L~~i~lp~--~l~~I~~~aF-~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 307 M--DCVKLSSVTLPT--ALKTIQVYAF-KNCKALSTISYPKS 343 (379)
T ss_dssp T--TCTTCCEEECCT--TCCEECTTTT-TTCTTCCCCCCCTT
T ss_pred c--CCCCCCEEEcCc--cccEEHHHHh-hCCCCCCEEEECCc
Confidence 2 578899999864 3443332222 35889998888543
Done!