BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006751
         (632 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5XIR9|UBAC1_RAT Ubiquitin-associated domain-containing protein 1 OS=Rattus
           norvegicus GN=Ubac1 PE=2 SV=1
          Length = 409

 Score = 36.2 bits (82), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 165 QQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSEEEARNT 206
           +QL  MGF   RA+ AL LN   V +++ WL E SE+ A +T
Sbjct: 198 RQLTEMGFPESRASKALRLNHMSVPQAMEWLIEHSEDPAIDT 239


>sp|Q8VDI7|UBAC1_MOUSE Ubiquitin-associated domain-containing protein 1 OS=Mus musculus
           GN=Ubac1 PE=2 SV=2
          Length = 409

 Score = 36.2 bits (82), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 165 QQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSEEEARNT 206
           +QL  MGF   RA+ AL LN   V +++ WL E SE+ A +T
Sbjct: 198 RQLTEMGFPESRASKALRLNHMSVPQAMEWLIEHSEDPAIDT 239


>sp|Q9BSL1|UBAC1_HUMAN Ubiquitin-associated domain-containing protein 1 OS=Homo sapiens
           GN=UBAC1 PE=1 SV=1
          Length = 405

 Score = 35.8 bits (81), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 165 QQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSEEEARNT 206
           +QL  MGF   RAT AL LN   V +++ WL E +E+   +T
Sbjct: 198 RQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTIDT 239


>sp|Q8L6Y1|UBP14_ARATH Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana
           GN=UBP14 PE=1 SV=1
          Length = 797

 Score = 34.7 bits (78), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 17/104 (16%)

Query: 161 EALSQQLVAMGFSSERA-TLALMLNEGRVEESVNWLFEVSEEEARNTDPKLESSGSLKID 219
           E +  QLV+MGFS       A+  +   VEE++NWL       +   DP +++       
Sbjct: 616 EEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLL------SHMDDPDIDAP------ 663

Query: 220 ISEELARIS----EIELRYKCSKQEVERAVVASEGDLDKAEDTI 259
           IS + + I     +  L +  ++    +A+ AS GD++KA D +
Sbjct: 664 ISHQTSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWV 707


>sp|Q28DG7|UBAC1_XENTR Ubiquitin-associated domain-containing protein 1 OS=Xenopus
           tropicalis GN=ubac1 PE=2 SV=1
          Length = 406

 Score = 33.5 bits (75), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 165 QQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSEEEA 203
           +QL  MGF   RA  AL LN   V +++ WL E +++ A
Sbjct: 198 RQLTEMGFPESRAVKALRLNHMSVTQAMEWLIEHADDPA 236


>sp|Q8H0T4|UPL2_ARATH E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1
            SV=3
          Length = 3658

 Score = 33.5 bits (75), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 15/160 (9%)

Query: 161  EALSQQLVAMGFSSERATLAL-MLNEGRVEESVNWLFEVSEEEARNTDPKLESSGSLKID 219
            EA+   +V MGFS  RA  AL  +    VE +++WLF  + E+    D +L  + +L + 
Sbjct: 1274 EAIVGMIVEMGFSRSRAEDALRRVGTNSVEMAMDWLF-TNPEDPVQEDDELAQALALSLG 1332

Query: 220  ISEELARISEIELRYKCSKQEVE------RAVVASEGDLDKAEDTIKVQKQELPATPPRP 273
             S E  ++ + E      ++E E        V+A+   L +++D+I     +L  T    
Sbjct: 1333 NSSETPKLEDTEKPVDVPQEEAEPKEPPVDEVIAASVKLFQSDDSIAFPLVDLFVTLCNR 1392

Query: 274  DDTADTKSMVRPQEKLLAPITIQQRRNERDFNYTKAAATV 313
            +   D     RP  K++  +  Q +  + DF+    A T+
Sbjct: 1393 NKGED-----RP--KIVFYLIQQLKLVQLDFSKDTGALTM 1425


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.123    0.352 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 238,656,725
Number of Sequences: 539616
Number of extensions: 10349750
Number of successful extensions: 34566
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 401
Number of HSP's that attempted gapping in prelim test: 32957
Number of HSP's gapped (non-prelim): 1533
length of query: 632
length of database: 191,569,459
effective HSP length: 124
effective length of query: 508
effective length of database: 124,657,075
effective search space: 63325794100
effective search space used: 63325794100
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)