Query 006751
Match_columns 632
No_of_seqs 110 out of 122
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 07:59:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lbc_A Ubiquitin carboxyl-term 99.9 5.8E-26 2E-30 200.9 12.0 104 160-267 3-122 (126)
2 4ae4_A Ubiquitin-associated pr 99.9 6E-26 2E-30 202.3 4.6 100 160-263 8-115 (118)
3 1wiv_A UBP14, ubiquitin-specif 99.8 1.3E-21 4.3E-26 161.8 5.2 70 189-267 2-72 (73)
4 3ihp_A Ubiquitin carboxyl-term 99.8 6.7E-21 2.3E-25 211.6 8.1 105 159-267 651-763 (854)
5 1oqy_A HHR23A, UV excision rep 99.7 1.9E-18 6.6E-23 177.6 6.6 105 158-266 166-367 (368)
6 2crn_A Ubash3A protein; compac 99.7 8.4E-18 2.9E-22 136.2 4.6 54 157-210 6-60 (64)
7 2dag_A Ubiquitin carboxyl-term 99.6 1.4E-15 4.7E-20 126.1 6.9 53 159-211 8-61 (74)
8 1vek_A UBP14, ubiquitin-specif 99.6 1.8E-15 6E-20 128.2 6.6 53 158-210 27-80 (84)
9 2dai_A Ubadc1, ubiquitin assoc 99.6 2.7E-15 9.2E-20 127.1 6.4 52 159-210 28-79 (83)
10 1whc_A RSGI RUH-027, UBA/UBX 3 99.6 1.9E-15 6.4E-20 122.0 4.6 50 159-208 8-58 (64)
11 2dak_A Ubiquitin carboxyl-term 99.5 2.7E-15 9.2E-20 120.1 4.7 53 158-210 7-59 (63)
12 2cpw_A CBL-interacting protein 99.4 4E-14 1.4E-18 114.4 4.1 46 159-204 18-64 (64)
13 1wgn_A UBAP1, ubiquitin associ 99.4 4.4E-13 1.5E-17 109.6 5.4 39 224-266 23-61 (63)
14 1dv0_A DNA repair protein HHR2 99.3 4.3E-13 1.5E-17 102.8 2.8 44 160-203 4-47 (47)
15 1wji_A Tudor domain containing 99.3 4.5E-12 1.5E-16 102.4 6.8 50 159-208 8-57 (63)
16 2dkl_A Trinucleotide repeat co 99.3 3.2E-12 1.1E-16 108.9 6.0 47 160-206 21-67 (85)
17 2lbc_A Ubiquitin carboxyl-term 99.3 6.2E-12 2.1E-16 111.3 7.1 47 159-205 77-124 (126)
18 2g3q_A Protein YBL047C; endocy 99.2 6.8E-12 2.3E-16 93.2 5.6 41 159-199 3-43 (43)
19 1wgn_A UBAP1, ubiquitin associ 99.2 4.7E-12 1.6E-16 103.5 4.3 44 157-200 16-59 (63)
20 2ekk_A UBA domain from E3 ubiq 99.2 5.6E-12 1.9E-16 95.5 4.3 40 159-199 8-47 (47)
21 1wiv_A UBP14, ubiquitin-specif 99.2 1.3E-11 4.6E-16 102.0 5.6 45 159-203 28-72 (73)
22 1ify_A HHR23A, UV excision rep 99.1 5.9E-11 2E-15 91.3 5.2 43 158-200 6-48 (49)
23 1wji_A Tudor domain containing 99.1 1E-10 3.5E-15 94.5 6.9 51 219-273 7-58 (63)
24 2dak_A Ubiquitin carboxyl-term 99.1 8.8E-11 3E-15 94.0 5.9 50 219-272 7-57 (63)
25 2cpw_A CBL-interacting protein 99.0 1.2E-10 4E-15 94.2 4.8 43 221-267 19-63 (64)
26 2jy5_A Ubiquilin-1; UBA, alter 99.0 2.1E-10 7.1E-15 89.3 5.7 41 159-199 11-52 (52)
27 2knz_A Ubiquilin-4; cytoplasm, 99.0 2.7E-10 9.1E-15 88.9 5.8 40 160-199 11-51 (53)
28 1veg_A NEDD8 ultimate buster-1 99.0 4E-10 1.4E-14 96.2 7.3 47 219-269 27-74 (83)
29 2dag_A Ubiquitin carboxyl-term 99.0 4.8E-10 1.7E-14 93.0 7.2 49 219-271 7-57 (74)
30 2crn_A Ubash3A protein; compac 99.0 3.5E-10 1.2E-14 91.6 6.2 50 220-273 8-59 (64)
31 1whc_A RSGI RUH-027, UBA/UBX 3 99.0 2.8E-10 9.5E-15 91.9 5.0 48 220-271 8-57 (64)
32 1veg_A NEDD8 ultimate buster-1 99.0 5E-10 1.7E-14 95.6 6.7 42 160-201 29-70 (83)
33 1z96_A DNA-damage, UBA-domain 99.0 4.9E-10 1.7E-14 80.9 5.4 37 160-196 4-40 (40)
34 2dai_A Ubadc1, ubiquitin assoc 99.0 8.8E-10 3E-14 93.5 7.1 50 220-273 28-78 (83)
35 2ekk_A UBA domain from E3 ubiq 98.9 9.6E-10 3.3E-14 83.3 5.9 40 219-263 7-47 (47)
36 2g3q_A Protein YBL047C; endocy 98.9 7E-10 2.4E-14 82.3 4.7 38 221-262 4-42 (43)
37 1vg5_A RSGI RUH-014, rhomboid 98.9 1.1E-09 3.6E-14 91.4 5.6 43 159-201 28-70 (73)
38 2dah_A Ubiquilin-3; UBA domain 98.9 1.6E-09 5.5E-14 85.3 5.1 42 160-201 9-51 (54)
39 2dkl_A Trinucleotide repeat co 98.9 2.4E-09 8.3E-14 91.2 6.5 47 220-270 20-67 (85)
40 2dna_A Unnamed protein product 98.9 1.7E-09 5.9E-14 89.2 4.8 42 160-201 19-61 (67)
41 2jy5_A Ubiquilin-1; UBA, alter 98.9 2.3E-09 8E-14 83.4 5.1 36 224-263 16-52 (52)
42 1dv0_A DNA repair protein HHR2 98.8 6.9E-10 2.4E-14 85.0 1.9 39 224-266 8-46 (47)
43 2dah_A Ubiquilin-3; UBA domain 98.8 5.7E-09 2E-13 82.2 7.1 41 222-266 11-52 (54)
44 1vek_A UBP14, ubiquitin-specif 98.8 5.2E-09 1.8E-13 88.7 7.1 49 219-271 27-77 (84)
45 1vej_A Riken cDNA 4931431F19; 98.8 3.7E-09 1.3E-13 88.5 5.8 42 161-202 30-72 (74)
46 1ify_A HHR23A, UV excision rep 98.8 3E-09 1E-13 81.8 4.7 38 221-262 8-46 (49)
47 2bwb_A Ubiquitin-like protein 98.8 5.1E-09 1.8E-13 80.0 5.5 39 160-198 7-46 (46)
48 2dna_A Unnamed protein product 98.8 4.4E-09 1.5E-13 86.8 5.3 39 224-266 23-62 (67)
49 1vg5_A RSGI RUH-014, rhomboid 98.8 7.7E-09 2.6E-13 86.2 6.4 43 220-266 28-71 (73)
50 2knz_A Ubiquilin-4; cytoplasm, 98.8 4.8E-09 1.6E-13 81.8 4.7 36 224-263 15-51 (53)
51 1wr1_B Ubiquitin-like protein 98.8 6.6E-09 2.2E-13 83.2 5.3 39 161-199 18-57 (58)
52 1vej_A Riken cDNA 4931431F19; 98.7 1.2E-08 4.2E-13 85.4 6.4 40 223-266 32-72 (74)
53 4ae4_A Ubiquitin-associated pr 98.7 1.6E-08 5.4E-13 90.4 7.0 38 162-199 78-115 (118)
54 1wr1_B Ubiquitin-like protein 98.7 1.3E-08 4.3E-13 81.6 5.5 36 224-263 21-57 (58)
55 2bwb_A Ubiquitin-like protein 98.7 1.8E-08 6E-13 77.1 5.0 35 224-262 11-46 (46)
56 1z96_A DNA-damage, UBA-domain 98.7 1.9E-08 6.6E-13 72.5 4.9 33 224-260 8-40 (40)
57 2cwb_A Chimera of immunoglobul 98.4 2.5E-07 8.4E-12 82.3 5.6 41 160-200 66-107 (108)
58 2cos_A Serine/threonine protei 98.4 2E-07 6.9E-12 74.5 4.1 36 162-197 11-47 (54)
59 2cwb_A Chimera of immunoglobul 98.3 6.9E-07 2.4E-11 79.4 4.9 39 222-264 68-107 (108)
60 1oqy_A HHR23A, UV excision rep 98.2 3.1E-07 1.1E-11 94.9 1.3 44 159-202 324-367 (368)
61 2ooa_A E3 ubiquitin-protein li 98.1 5.1E-06 1.8E-10 66.1 5.5 40 159-198 10-49 (52)
62 3k9o_A Ubiquitin-conjugating e 97.9 1.7E-05 5.8E-10 75.0 7.7 40 159-198 162-201 (201)
63 3ihp_A Ubiquitin carboxyl-term 97.9 6E-06 2E-10 92.6 5.2 55 148-202 681-762 (854)
64 2d9s_A CBL E3 ubiquitin protei 97.9 1.1E-05 3.7E-10 64.5 5.0 40 160-199 9-48 (53)
65 2juj_A E3 ubiquitin-protein li 97.9 1.4E-05 4.7E-10 64.4 5.0 42 159-200 6-47 (56)
66 2qsf_X RAD23, UV excision repa 97.8 1.8E-05 6.1E-10 75.2 5.6 41 161-201 131-171 (171)
67 1wj7_A Hypothetical protein (R 97.7 4.6E-05 1.6E-09 67.7 6.7 42 160-201 39-81 (104)
68 2cp8_A NEXT to BRCA1 gene 1 pr 97.7 2.8E-05 9.5E-10 62.2 4.7 41 161-201 10-51 (54)
69 2oo9_A E3 ubiquitin-protein li 97.7 4.5E-05 1.5E-09 59.5 5.3 41 159-199 3-43 (46)
70 2d9s_A CBL E3 ubiquitin protei 97.6 0.00011 3.7E-09 58.7 6.6 38 221-262 10-47 (53)
71 2cp9_A EF-TS, EF-TSMT, elongat 97.6 7E-05 2.4E-09 61.5 5.6 42 219-263 7-49 (64)
72 2ooa_A E3 ubiquitin-protein li 97.6 7E-05 2.4E-09 59.6 5.3 38 220-261 11-48 (52)
73 1wj7_A Hypothetical protein (R 97.6 5.3E-05 1.8E-09 67.3 5.0 41 222-265 41-81 (104)
74 2cos_A Serine/threonine protei 97.5 0.00012 4.2E-09 58.7 5.5 39 219-261 7-47 (54)
75 3k9o_A Ubiquitin-conjugating e 97.5 7.8E-05 2.7E-09 70.5 4.8 35 224-262 167-201 (201)
76 2qsf_X RAD23, UV excision repa 97.2 0.00023 8E-09 67.6 4.7 38 224-265 134-171 (171)
77 2cp8_A NEXT to BRCA1 gene 1 pr 97.1 0.00091 3.1E-08 53.5 6.4 38 224-265 13-51 (54)
78 2oo9_A E3 ubiquitin-protein li 97.0 0.00081 2.8E-08 52.5 4.9 39 220-262 4-42 (46)
79 2juj_A E3 ubiquitin-protein li 96.7 0.0014 4.8E-08 52.9 4.1 37 224-264 11-47 (56)
80 3e46_A Ubiquitin-conjugating e 96.6 0.0043 1.5E-07 61.5 7.8 39 159-197 214-252 (253)
81 1wgl_A TOLL-interacting protei 96.4 0.0063 2.1E-07 48.9 6.5 46 220-267 8-54 (59)
82 2cp9_A EF-TS, EF-TSMT, elongat 96.3 0.0046 1.6E-07 50.8 4.9 38 162-199 11-49 (64)
83 1otr_A Protein CUE2; protein-p 96.1 0.0086 2.9E-07 46.8 5.6 44 220-265 4-47 (49)
84 1xb2_B EF-TS, elongation facto 96.0 0.0072 2.5E-07 61.3 5.6 35 224-261 8-42 (291)
85 1aip_C EF-TS, elongation facto 95.9 0.0082 2.8E-07 58.3 5.5 36 227-262 7-42 (196)
86 3e46_A Ubiquitin-conjugating e 95.6 0.011 3.8E-07 58.6 5.3 35 224-262 219-253 (253)
87 1tr8_A Conserved protein (MTH1 95.4 0.015 5.2E-07 51.1 4.9 38 219-259 63-101 (102)
88 1wgl_A TOLL-interacting protei 94.6 0.035 1.2E-06 44.6 4.5 42 159-201 8-52 (59)
89 1xb2_B EF-TS, elongation facto 93.9 0.051 1.8E-06 55.1 5.0 36 162-197 6-42 (291)
90 1q02_A Sequestosome 1; helical 93.6 0.04 1.4E-06 44.0 2.9 36 160-195 10-47 (52)
91 1aip_C EF-TS, elongation facto 93.4 0.076 2.6E-06 51.6 5.0 38 162-199 5-43 (196)
92 2dal_A Protein KIAA0794; FAS a 93.0 0.17 5.6E-06 40.5 5.7 40 224-266 19-58 (62)
93 1v92_A NSFL1 cofactor P47; 3-h 92.8 0.16 5.3E-06 37.4 4.8 37 224-263 9-45 (46)
94 2dam_A ETEA protein; KIAA0887, 92.6 0.26 8.8E-06 40.1 6.3 42 224-268 22-64 (67)
95 4dbg_B Ring finger protein 31; 92.6 0.23 7.7E-06 47.3 6.8 70 167-259 24-98 (162)
96 4dbg_B Ring finger protein 31; 92.5 0.51 1.8E-05 44.9 9.1 63 172-259 75-138 (162)
97 2dhy_A CUE domain-containing p 92.4 0.18 6.2E-06 41.6 5.2 43 220-265 18-61 (67)
98 2dhy_A CUE domain-containing p 92.3 0.17 5.8E-06 41.7 4.9 42 159-201 17-61 (67)
99 2dzl_A Protein FAM100B; UBA-li 91.0 0.4 1.4E-05 39.0 5.8 39 224-265 21-59 (66)
100 2pwq_A Ubiquitin conjugating e 90.6 0.083 2.8E-06 51.2 1.7 39 160-198 177-215 (216)
101 2lva_A Ubiquitin carboxyl-term 85.8 0.16 5.3E-06 46.8 0.0 40 224-266 22-62 (129)
102 3avx_A Elongation factor TS, e 85.6 0.077 2.6E-06 62.9 -2.5 36 224-262 9-44 (1289)
103 1q02_A Sequestosome 1; helical 85.3 0.36 1.2E-05 38.6 2.0 29 233-261 19-49 (52)
104 1otr_A Protein CUE2; protein-p 85.2 1.2 4.1E-05 34.8 4.8 42 160-201 4-47 (49)
105 2di0_A Activating signal coint 83.5 2 6.7E-05 36.1 5.7 42 219-262 12-53 (71)
106 1ufz_A Hypothetical protein BA 80.0 1.7 5.8E-05 37.5 4.2 38 224-264 38-77 (83)
107 2pwq_A Ubiquitin conjugating e 77.5 0.46 1.6E-05 46.0 0.0 34 224-261 181-214 (216)
108 2di0_A Activating signal coint 75.3 4.4 0.00015 34.0 5.3 40 159-198 12-53 (71)
109 3e21_A HFAF1, FAS-associated f 73.4 4.2 0.00014 31.3 4.3 34 224-260 9-43 (45)
110 2dal_A Protein KIAA0794; FAS a 72.3 7.4 0.00025 30.9 5.7 43 158-200 13-56 (62)
111 3mva_O Transcription terminati 70.3 2.3 8E-05 42.4 3.0 103 158-263 17-134 (343)
112 2dam_A ETEA protein; KIAA0887, 69.2 7.9 0.00027 31.4 5.3 39 162-200 20-60 (67)
113 1tte_A Ubiquitin-conjugating e 69.1 2.9 9.9E-05 40.4 3.2 28 160-187 169-196 (215)
114 1vdl_A Ubiquitin carboxyl-term 67.7 11 0.00038 32.3 6.1 48 224-277 28-76 (80)
115 1v92_A NSFL1 cofactor P47; 3-h 66.4 13 0.00044 27.1 5.6 39 161-199 6-45 (46)
116 4fp9_B Mterf domain-containing 65.6 24 0.00083 36.1 9.3 99 147-248 31-137 (335)
117 3avx_A Elongation factor TS, e 60.1 1.2 4.1E-05 53.1 -1.5 37 163-199 8-45 (1289)
118 1ixs_A Holliday junction DNA h 59.9 14 0.00048 29.6 5.1 24 160-183 17-40 (62)
119 1tr8_A Conserved protein (MTH1 59.8 11 0.00038 33.1 4.9 28 168-195 74-101 (102)
120 1oai_A Nuclear RNA export fact 57.0 19 0.00065 28.7 5.3 38 224-261 8-45 (59)
121 3bq3_A Defective in cullin ned 56.5 11 0.00039 37.7 5.0 39 224-265 19-57 (270)
122 1p3q_Q VPS9P, vacuolar protein 54.5 5.9 0.0002 31.7 2.0 37 222-261 14-51 (54)
123 2dzl_A Protein FAM100B; UBA-li 54.2 22 0.00074 28.8 5.4 45 155-199 11-57 (66)
124 3e21_A HFAF1, FAS-associated f 54.1 12 0.0004 28.8 3.5 35 161-195 6-42 (45)
125 2jp7_A MRNA export factor MEX6 51.1 32 0.0011 27.4 5.7 39 224-262 7-45 (57)
126 1ixs_A Holliday junction DNA h 50.1 26 0.0009 28.0 5.2 22 227-248 20-41 (62)
127 2igp_A Retinoblastoma-associat 50.0 3.8 0.00013 36.6 0.3 87 162-261 22-114 (120)
128 3rjv_A Putative SEL1 repeat pr 49.6 50 0.0017 29.2 7.5 99 162-264 7-117 (212)
129 4fp9_B Mterf domain-containing 48.4 30 0.001 35.4 6.6 107 156-266 74-198 (335)
130 3k6g_A Telomeric repeat-bindin 47.3 31 0.0011 31.1 5.7 38 224-261 14-51 (111)
131 1p3q_Q VPS9P, vacuolar protein 44.7 16 0.00055 29.2 3.1 40 159-198 11-52 (54)
132 1tte_A Ubiquitin-conjugating e 44.1 19 0.00066 34.7 4.2 29 220-252 168-197 (215)
133 2qho_B E3 ubiquitin-protein li 41.3 44 0.0015 26.8 5.1 46 218-265 6-52 (53)
134 3e7l_A Transcriptional regulat 40.4 15 0.00051 28.4 2.3 24 236-259 19-42 (63)
135 1umq_A Photosynthetic apparatu 39.2 15 0.00051 30.8 2.3 22 238-259 43-64 (81)
136 3c1d_A Protein ORAA, regulator 39.1 98 0.0033 27.9 7.8 73 162-248 84-157 (159)
137 3nr7_A DNA-binding protein H-N 38.1 48 0.0016 28.4 5.2 37 141-177 42-78 (86)
138 2nsa_A Trigger factor, TF; cha 36.2 37 0.0013 30.2 4.5 45 219-263 108-163 (170)
139 3rjv_A Putative SEL1 repeat pr 35.0 1.6E+02 0.0055 25.8 8.5 95 164-262 41-155 (212)
140 3k6g_A Telomeric repeat-bindin 33.4 68 0.0023 29.0 5.6 36 164-199 18-53 (111)
141 3gty_X Trigger factor, TF; cha 32.9 90 0.0031 32.6 7.4 50 218-267 349-409 (433)
142 3m66_A Mterf3, mterf domain-co 32.8 17 0.00057 34.8 1.8 23 161-183 42-64 (270)
143 2qho_B E3 ubiquitin-protein li 32.7 74 0.0025 25.5 5.1 33 168-200 19-51 (53)
144 3bge_A Predicted ATPase; struc 31.4 24 0.00083 34.6 2.6 30 174-203 7-41 (201)
145 3ctd_A Putative ATPase, AAA fa 29.6 40 0.0014 33.3 3.8 34 170-203 31-69 (213)
146 1klx_A Cysteine rich protein B 29.0 75 0.0026 26.5 5.0 26 235-260 91-121 (138)
147 3mva_O Transcription terminati 28.6 1.9E+02 0.0066 28.7 8.7 38 224-261 240-284 (343)
148 1cuk_A RUVA protein; DNA repai 27.7 61 0.0021 31.0 4.7 25 159-183 159-183 (203)
149 1w26_A Trigger factor, TF; cha 25.5 5.9E+02 0.02 26.5 13.2 46 218-264 360-416 (432)
150 2ztd_A Holliday junction ATP-d 25.0 82 0.0028 30.6 5.1 63 113-183 124-187 (212)
151 1eto_A FIS, factor for inversi 25.0 36 0.0012 29.1 2.3 23 237-259 59-81 (98)
152 3dfg_A Xcrecx, regulatory prot 24.9 3E+02 0.01 24.8 8.6 73 162-248 86-159 (162)
153 2ve7_A Kinetochore protein HEC 24.6 19 0.00065 36.4 0.6 87 161-260 19-111 (315)
154 3m66_A Mterf3, mterf domain-co 24.1 74 0.0025 30.3 4.5 102 160-264 76-195 (270)
155 1ntc_A Protein (nitrogen regul 23.5 22 0.00077 29.2 0.7 24 236-259 51-74 (91)
156 1dvo_A FINO, fertility inhibit 22.8 97 0.0033 29.0 4.9 58 183-248 36-95 (152)
157 3dfg_A Xcrecx, regulatory prot 22.6 3.6E+02 0.012 24.3 8.6 98 144-260 16-121 (162)
158 3lsg_A Two-component response 21.8 2E+02 0.0069 23.0 6.1 53 188-261 4-66 (103)
159 1g2h_A Transcriptional regulat 21.6 39 0.0013 26.0 1.7 21 238-259 23-43 (61)
160 1cuk_A RUVA protein; DNA repai 20.8 1.1E+02 0.0036 29.4 4.9 20 229-248 165-184 (203)
161 2zc2_A DNAD-like replication p 20.1 84 0.0029 25.0 3.4 27 222-248 21-47 (78)
No 1
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.93 E-value=5.8e-26 Score=200.94 Aligned_cols=104 Identities=24% Similarity=0.282 Sum_probs=89.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHh-CCCHHHHHHHhhhcCCcccCCCCCcccCCCCC-------------CCCchHH-H
Q 006751 160 LEALSQQLVAMGFSSERATLALMLN-EGRVEESVNWLFEVSEEEARNTDPKLESSGSL-------------KIDISEE-L 224 (632)
Q Consensus 160 lE~LVqQLvAMGFpe~RCkKALiat-NgDVEAAMnWLFEHMEDpDiD~P~~l~s~~~~-------------~iDIseE-L 224 (632)
++.+|+||++|||++.+|++||+.| |+++|+||+|||+|++|+++++|+.+...... ...+.++ |
T Consensus 3 d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~epl~~~~~~s~~~~~~~~l~~~~~~~~~~e~~v 82 (126)
T 2lbc_A 3 DESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIV 82 (126)
T ss_dssp CTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSSCTTCCSSCCSSSSSCCCCSTTSSCCCCCCHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhcccccccccccccccccccccchhhhcccccccCcCHHHH
Confidence 5688999999999999999999999 56999999999999999999988755211110 1125666 9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCC-CCC
Q 006751 225 ARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQ-ELP 267 (632)
Q Consensus 225 a~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpD-D~~ 267 (632)
.+|.+| ||+.++|++||+.|+||+++|++|||+|++ |++
T Consensus 83 ~~L~~M----GF~~~~a~~AL~~~~~~~e~A~e~L~~~~~~d~~ 122 (126)
T 2lbc_A 83 AIITSM----GFQRNQAIQALRATNNNLERALDWIFSHPEFEED 122 (126)
T ss_dssp HHHHHH----TSCHHHHHHHHHHHTSCHHHHHHHHHTCCSSCCC
T ss_pred HHHHHc----CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCccC
Confidence 999888 999999999999999999999999999999 754
No 2
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.92 E-value=6e-26 Score=202.34 Aligned_cols=100 Identities=14% Similarity=0.239 Sum_probs=78.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcC-------CcccCCCCCcccCCCCCCCCchHH-HHHHHHHH
Q 006751 160 LEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVS-------EEEARNTDPKLESSGSLKIDISEE-LARISEIE 231 (632)
Q Consensus 160 lE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHM-------EDpDiD~P~~l~s~~~~~iDIseE-La~L~eMe 231 (632)
.+++|+||++||||++||+|||++|++|+|+||+|||+|| +||+++.++++......+..+..+ |.+|.+|
T Consensus 8 e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~eM- 86 (118)
T 4ae4_A 8 ERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEM- 86 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHHc-
Confidence 4689999999999999999999999779999999999998 445555554442211111122333 6666666
Q ss_pred HhcCCCHHHHHHHHHHccCCHHHHHHHHhhcC
Q 006751 232 LRYKCSKQEVERAVVASEGDLDKAEDTIKVQK 263 (632)
Q Consensus 232 vsyGFs~~qAeKALkeTdGDVERAVEWLFSHp 263 (632)
||+.++|++||+.|+||+|||+||||..-
T Consensus 87 ---GF~~~~a~~AL~~~~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 87 ---GFELKDIKEVLLLHNNDQDNALEDLMARA 115 (118)
T ss_dssp ---TCCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 99999999999999999999999999863
No 3
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.84 E-value=1.3e-21 Score=161.82 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=62.7
Q ss_pred HHHHHHhhhcCCcccCCCCCcccCCCCCCCCchHH-HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCCCC
Q 006751 189 EESVNWLFEVSEEEARNTDPKLESSGSLKIDISEE-LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQELP 267 (632)
Q Consensus 189 EAAMnWLFEHMEDpDiD~P~~l~s~~~~~iDIseE-La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD~~ 267 (632)
|+||||||+||||||||.|+.+ + ...++++ |.+|.+| ||++++|++||+.|+||+|+|++|||+|++|+.
T Consensus 2 ~~am~wl~~h~dDpd~d~pl~~-~----~~~~~~~~v~~L~~M----GF~~~~a~~AL~~t~~nve~Ave~L~~~~~d~~ 72 (73)
T 1wiv_A 2 SSGSSGLLSHMDDPDIDAPISH-Q----TSDIDQSSVDTLLSF----GFAEDVARKALKASGGDIEKATDWVFNNSGPSS 72 (73)
T ss_dssp CCCCCCCSSCCSCSCSSCCSCC-S----SCSSCHHHHHHHHHH----TCCHHHHHHHHHHTTSCHHHHHHHHHHSCCSSC
T ss_pred hHHHHHHHHcCCCCCccCCCCC-C----CCCCCHHHHHHHHHc----CCCHHHHHHHHHHhCCCHHHHHHHHHhCCCCCC
Confidence 6899999999999999999755 2 2346677 9999999 999999999999999999999999999999865
No 4
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.82 E-value=6.7e-21 Score=211.59 Aligned_cols=105 Identities=23% Similarity=0.302 Sum_probs=87.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHh-CCCHHHHHHHhhhcCCcccCCCCCcccCCC---CC---CCCchHH-HHHHHHH
Q 006751 159 KLEALSQQLVAMGFSSERATLALMLN-EGRVEESVNWLFEVSEEEARNTDPKLESSG---SL---KIDISEE-LARISEI 230 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe~RCkKALiat-NgDVEAAMnWLFEHMEDpDiD~P~~l~s~~---~~---~iDIseE-La~L~eM 230 (632)
.++++++||++|||+.++|+|||+++ |+++|+||+|||+||||+||++|+...... .. ...+++| |++|.+|
T Consensus 651 ~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~m 730 (854)
T 3ihp_A 651 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSM 730 (854)
T ss_dssp --CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CCHHHHHHHHTT
T ss_pred cCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccccccccccccCCCCHHHHHHHHHc
Confidence 57889999999999999999999998 889999999999999999999998653211 00 0245666 8777776
Q ss_pred HHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCCCC
Q 006751 231 ELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQELP 267 (632)
Q Consensus 231 evsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD~~ 267 (632)
||+.++|++||++++||+|||+||||+|+||..
T Consensus 731 ----Gf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~ 763 (854)
T 3ihp_A 731 ----GFSRDQALKALRATNNSLERAVDWIFSHIDDLD 763 (854)
T ss_dssp ----TCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHhhcCcHHHHHHhhhcCccccc
Confidence 999999999999999999999999999999854
No 5
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.73 E-value=1.9e-18 Score=177.64 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcCCcccC---------------------------------
Q 006751 158 RKLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSEEEAR--------------------------------- 204 (632)
Q Consensus 158 RKlE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHMEDpDi--------------------------------- 204 (632)
-.+|..|++|++|||++++|++||.++++|+|.||+|||.|++|...
T Consensus 166 ~~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~pq 245 (368)
T 1oqy_A 166 SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLRDQPQ 245 (368)
T ss_dssp TTHHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCCCCCCCCCSSCCCCSSCCSCCTTHHHHHSHH
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCcccccccCCccccccccccCccccccchHHHHhcChH
Confidence 34678899999999999999999999988999999999999987521
Q ss_pred --------------------------------------------CCCCcccCCC-------------C---CCCCch---
Q 006751 205 --------------------------------------------NTDPKLESSG-------------S---LKIDIS--- 221 (632)
Q Consensus 205 --------------------------------------------D~P~~l~s~~-------------~---~~iDIs--- 221 (632)
++|++-...+ . ..+.++
T Consensus 246 f~~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~~n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~ee 325 (368)
T 1oqy_A 246 FQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQE 325 (368)
T ss_dssp HHHHHHSTTTCTTHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCCTTCSSCCCCTTT
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHcCcccccccccccccccccccccCCccccccCCCcC
Confidence 1111000000 0 011333
Q ss_pred HH-HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCCC
Q 006751 222 EE-LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQEL 266 (632)
Q Consensus 222 eE-La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD~ 266 (632)
+| |++|.+| ||+..+|++||++|++|+++|++|||+|++|.
T Consensus 326 ~eaI~rL~~m----GF~~~~a~~al~a~~~n~e~A~~~L~~~~~d~ 367 (368)
T 1oqy_A 326 KEAIERLKAL----GFPESLVIQAYFACEKNENLAANFLLSQNFDD 367 (368)
T ss_dssp HHHHHHHHHH----TCCSHHHHHHTSSSSSCSSHHHHHHHHHHCCC
T ss_pred HHHHHHHHHc----CCCHHHHHHHHHHcCCCHHHHHHHHhhCcCcC
Confidence 33 7777666 99999999999999999999999999999985
No 6
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.69 E-value=8.4e-18 Score=136.15 Aligned_cols=54 Identities=26% Similarity=0.349 Sum_probs=49.7
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHhCC-CHHHHHHHhhhcCCcccCCCCCcc
Q 006751 157 SRKLEALSQQLVAMGFSSERATLALMLNEG-RVEESVNWLFEVSEEEARNTDPKL 210 (632)
Q Consensus 157 sRKlE~LVqQLvAMGFpe~RCkKALiatNg-DVEAAMnWLFEHMEDpDiD~P~~l 210 (632)
.|.+|++|+||++|||++++|++||++|++ ++|+||+|||+|++|+|||+|++.
T Consensus 6 ~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d~d~p~~~ 60 (64)
T 2crn_A 6 SGSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPISG 60 (64)
T ss_dssp CCCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTTSCCSCCC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCccccCCCCC
Confidence 367889999999999999999999999955 999999999999999999999754
No 7
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=126.13 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=49.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHhCC-CHHHHHHHhhhcCCcccCCCCCccc
Q 006751 159 KLEALSQQLVAMGFSSERATLALMLNEG-RVEESVNWLFEVSEEEARNTDPKLE 211 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe~RCkKALiatNg-DVEAAMnWLFEHMEDpDiD~P~~l~ 211 (632)
.++++|+||++|||++.+|++||.++++ |+|+||+|||+|++|+|+|+|+++.
T Consensus 8 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d~d~p~~~~ 61 (74)
T 2dag_A 8 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILP 61 (74)
T ss_dssp SCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTTSSSCSCCS
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcccccccCCC
Confidence 4789999999999999999999999965 8999999999999999999998663
No 8
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.58 E-value=1.8e-15 Score=128.23 Aligned_cols=53 Identities=28% Similarity=0.382 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHh-CCCHHHHHHHhhhcCCcccCCCCCcc
Q 006751 158 RKLEALSQQLVAMGFSSERATLALMLN-EGRVEESVNWLFEVSEEEARNTDPKL 210 (632)
Q Consensus 158 RKlE~LVqQLvAMGFpe~RCkKALiat-NgDVEAAMnWLFEHMEDpDiD~P~~l 210 (632)
..++++|+||++|||++.+|++||+++ |+|+|.||+|||+|++|+|||+|+..
T Consensus 27 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d~d~p~~~ 80 (84)
T 1vek_A 27 VANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDAPISG 80 (84)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSTTTSCSSS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccccccCCCC
Confidence 347889999999999999999999998 68999999999999999999999754
No 9
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.7e-15 Score=127.11 Aligned_cols=52 Identities=38% Similarity=0.472 Sum_probs=49.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcCCcccCCCCCcc
Q 006751 159 KLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSEEEARNTDPKL 210 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHMEDpDiD~P~~l 210 (632)
.+++.|+||++|||++.+|++||.++++|+|.||+|||+|++|+|+|+|+..
T Consensus 28 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~d~d~pl~~ 79 (83)
T 2dai_A 28 VDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTIDTPLSG 79 (83)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCSTTCCCCCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcccccCCCC
Confidence 4788999999999999999999999999999999999999999999999754
No 10
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.55 E-value=1.9e-15 Score=122.02 Aligned_cols=50 Identities=26% Similarity=0.444 Sum_probs=47.3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHh-CCCHHHHHHHhhhcCCcccCCCCC
Q 006751 159 KLEALSQQLVAMGFSSERATLALMLN-EGRVEESVNWLFEVSEEEARNTDP 208 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe~RCkKALiat-NgDVEAAMnWLFEHMEDpDiD~P~ 208 (632)
.++++|+||++|||++.+|++||.++ |+|+|.||+|||+|++|+|+|+|+
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d~d~pl 58 (64)
T 1whc_A 8 AELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 58 (64)
T ss_dssp CCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSCTTCCS
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCccccccc
Confidence 35789999999999999999999999 799999999999999999999986
No 11
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.7e-15 Score=120.12 Aligned_cols=53 Identities=25% Similarity=0.388 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcCCcccCCCCCcc
Q 006751 158 RKLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSEEEARNTDPKL 210 (632)
Q Consensus 158 RKlE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHMEDpDiD~P~~l 210 (632)
..+++.|+||++|||++.+|++||.++++|+|.||+|||+|++|+|+|+|+..
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d~d~d~p~~~ 59 (63)
T 2dak_A 7 GPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMSG 59 (63)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHSCCSSSCCCC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCcccccCCCC
Confidence 35688999999999999999999999999999999999999999999999754
No 12
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.44 E-value=4e-14 Score=114.43 Aligned_cols=46 Identities=33% Similarity=0.510 Sum_probs=42.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHhCC-CHHHHHHHhhhcCCcccC
Q 006751 159 KLEALSQQLVAMGFSSERATLALMLNEG-RVEESVNWLFEVSEEEAR 204 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe~RCkKALiatNg-DVEAAMnWLFEHMEDpDi 204 (632)
.+|+.|+||++|||++.+|++||.++++ |+|.||+|||+|++|+|.
T Consensus 18 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d~ 64 (64)
T 2cpw_A 18 KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSSG 64 (64)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCC
Confidence 4577899999999999999999999977 999999999999999873
No 13
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.36 E-value=4.4e-13 Score=109.56 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCCC
Q 006751 224 LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQEL 266 (632)
Q Consensus 224 La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD~ 266 (632)
|++|.+| ||+.+||+|||++|+||||||+||||+|+|-.
T Consensus 23 V~~LvsM----GFs~~qA~kALKat~~NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 23 VETVVNM----GYSYECVLRAMKKKGENIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHHHHH----HCCHHHHHHHHHHHCSCHHHHHHHHHHHSCCC
T ss_pred HHHHHHc----CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence 5556555 99999999999999999999999999999864
No 14
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.32 E-value=4.3e-13 Score=102.79 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=41.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcCCccc
Q 006751 160 LEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSEEEA 203 (632)
Q Consensus 160 lE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHMEDpD 203 (632)
.++.|++|++|||++.+|.+||.++++|+|.|++|||+||+|++
T Consensus 4 e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d~~ 47 (47)
T 1dv0_A 4 EKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 47 (47)
T ss_dssp CHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCCCCC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcCCCC
Confidence 56789999999999999999999999999999999999999863
No 15
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.28 E-value=4.5e-12 Score=102.44 Aligned_cols=50 Identities=28% Similarity=0.361 Sum_probs=45.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcCCcccCCCCC
Q 006751 159 KLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSEEEARNTDP 208 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHMEDpDiD~P~ 208 (632)
.+++.|+||++|||++.+|++||.++++|+|.|++|||+|.++.+.+.|.
T Consensus 8 ~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~~~~~p~ 57 (63)
T 1wji_A 8 VDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVMGPP 57 (63)
T ss_dssp SCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCCCCCSSC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcccCCCC
Confidence 36789999999999999999999999999999999999999987777663
No 16
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.28 E-value=3.2e-12 Score=108.87 Aligned_cols=47 Identities=28% Similarity=0.369 Sum_probs=43.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcCCcccCCC
Q 006751 160 LEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSEEEARNT 206 (632)
Q Consensus 160 lE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHMEDpDiD~ 206 (632)
++++|+||++|||++.+|++||..+++|+|.||+|||+|++|+|...
T Consensus 21 n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D~D~~~ 67 (85)
T 2dkl_A 21 MSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDVDKRG 67 (85)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCCSSCCC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCCccccc
Confidence 58899999999999999999998889999999999999999987544
No 17
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.26 E-value=6.2e-12 Score=111.32 Aligned_cols=47 Identities=28% Similarity=0.543 Sum_probs=43.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcCC-cccCC
Q 006751 159 KLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSE-EEARN 205 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHME-DpDiD 205 (632)
..+..|+||++|||++.+|++||.++++|+|.|++|||.|++ |+|+|
T Consensus 77 ~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~~~d~~~d 124 (126)
T 2lbc_A 77 PPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSD 124 (126)
T ss_dssp CCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCCSSCCCCC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCccCCC
Confidence 457899999999999999999999999999999999999999 87765
No 18
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.25 E-value=6.8e-12 Score=93.16 Aligned_cols=41 Identities=27% Similarity=0.355 Sum_probs=38.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcC
Q 006751 159 KLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVS 199 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHM 199 (632)
..|+.|+||++|||++.+|++||.++++|+|.|++|||+|.
T Consensus 3 p~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 3 PKSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence 35788999999999999999999999999999999999983
No 19
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.23 E-value=4.7e-12 Score=103.54 Aligned_cols=44 Identities=25% Similarity=0.331 Sum_probs=40.5
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcCC
Q 006751 157 SRKLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSE 200 (632)
Q Consensus 157 sRKlE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHME 200 (632)
+---++.|++|++|||++.+|+|||.++++|||.|++|||.|+|
T Consensus 16 s~se~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 16 SPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSG 59 (63)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 33456789999999999999999999999999999999999997
No 20
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=5.6e-12 Score=95.48 Aligned_cols=40 Identities=30% Similarity=0.419 Sum_probs=37.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcC
Q 006751 159 KLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVS 199 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHM 199 (632)
.+++.|+||++|||++.+|++||.++| |+|.||+|||+|+
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 8 VNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTHP 47 (47)
T ss_dssp SCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence 468899999999999999999999996 9999999999996
No 21
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.20 E-value=1.3e-11 Score=102.05 Aligned_cols=45 Identities=24% Similarity=0.475 Sum_probs=42.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcCCccc
Q 006751 159 KLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSEEEA 203 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHMEDpD 203 (632)
..++.|+||++|||++.+|++||.++++|+|.|++|||+|.+|++
T Consensus 28 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d~~ 72 (73)
T 1wiv_A 28 IDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGPSS 72 (73)
T ss_dssp SCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCSSC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCCCC
Confidence 467789999999999999999999999999999999999999864
No 22
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.11 E-value=5.9e-11 Score=91.30 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcCC
Q 006751 158 RKLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSE 200 (632)
Q Consensus 158 RKlE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHME 200 (632)
...++.|+||++|||++.+|++||.++++|+|.|++|||+|+.
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~gip 48 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIP 48 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHCCC
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 3468899999999999999999999999999999999999853
No 23
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.11 E-value=1e-10 Score=94.50 Aligned_cols=51 Identities=22% Similarity=0.407 Sum_probs=44.7
Q ss_pred CchHH-HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCCCCCCCCCC
Q 006751 219 DISEE-LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQELPATPPRP 273 (632)
Q Consensus 219 DIseE-La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD~~s~~~kp 273 (632)
+++++ |.+|.+| ||+.++|++||++|+||+|+|++|||+|.++.+...|.|
T Consensus 7 ~~~~~~I~~L~~M----GF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~~~~~p~~ 58 (63)
T 1wji_A 7 GVDEKALKHITEM----GFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVMGPPS 58 (63)
T ss_dssp SSCHHHHHHHHTT----TCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCCCCCSSCC
T ss_pred CCCHHHHHHHHHc----CCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcccCCCCC
Confidence 46677 8899888 999999999999999999999999999998877655544
No 24
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=8.8e-11 Score=94.01 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=44.2
Q ss_pred CchHH-HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCCCCCCCCC
Q 006751 219 DISEE-LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQELPATPPR 272 (632)
Q Consensus 219 DIseE-La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD~~s~~~k 272 (632)
.++++ |.+|.+| ||++++|++||+.|+||+|+|++|||+|++|.+...|-
T Consensus 7 ~~~~~~v~~L~~M----GF~~~~a~~AL~~t~~nve~A~e~L~~~~~d~d~d~p~ 57 (63)
T 2dak_A 7 GPPEDCVTTIVSM----GFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAM 57 (63)
T ss_dssp CCCHHHHHHHHHH----TCCHHHHHHHHHHTTSCSHHHHHHHHHHHHSCCSSSCC
T ss_pred CCCHHHHHHHHHc----CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCcccccCC
Confidence 46677 9999998 99999999999999999999999999999987755443
No 25
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.05 E-value=1.2e-10 Score=94.20 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=39.4
Q ss_pred hHH-HHHHHHHHHhcCCCHHHHHHHHHHccC-CHHHHHHHHhhcCCCCC
Q 006751 221 SEE-LARISEIELRYKCSKQEVERAVVASEG-DLDKAEDTIKVQKQELP 267 (632)
Q Consensus 221 seE-La~L~eMevsyGFs~~qAeKALkeTdG-DVERAVEWLFSHpDD~~ 267 (632)
+++ |.+|.+| ||+.++|++||+.|+| |+|+|++|||+|++|++
T Consensus 19 ~e~~i~~L~~M----GF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d 63 (64)
T 2cpw_A 19 HGSALDVLLSM----GFPRARAQKALASTGGRSVQTACDWLFSHSGPSS 63 (64)
T ss_dssp CCCHHHHHHHH----TCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred CHHHHHHHHHc----CCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence 344 8889888 9999999999999999 99999999999999965
No 26
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.04 E-value=2.1e-10 Score=89.33 Aligned_cols=41 Identities=29% Similarity=0.475 Sum_probs=38.1
Q ss_pred hhHHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHHhhhcC
Q 006751 159 KLEALSQQLVAMGF-SSERATLALMLNEGRVEESVNWLFEVS 199 (632)
Q Consensus 159 KlE~LVqQLvAMGF-pe~RCkKALiatNgDVEAAMnWLFEHM 199 (632)
..++.|+||++||| ++.+|.+||.++++|+|.||+|||.|+
T Consensus 11 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 11 RFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 34678999999999 999999999999999999999999984
No 27
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.03 E-value=2.7e-10 Score=88.90 Aligned_cols=40 Identities=25% Similarity=0.427 Sum_probs=37.6
Q ss_pred hHHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHHhhhcC
Q 006751 160 LEALSQQLVAMGF-SSERATLALMLNEGRVEESVNWLFEVS 199 (632)
Q Consensus 160 lE~LVqQLvAMGF-pe~RCkKALiatNgDVEAAMnWLFEHM 199 (632)
.++.|+||++||| ++.+|.+||.+++||+|.||+|||+|.
T Consensus 11 ~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 11 FQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4667999999999 999999999999999999999999996
No 28
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.03 E-value=4e-10 Score=96.18 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=42.4
Q ss_pred CchHH-HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCCCCCC
Q 006751 219 DISEE-LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQELPAT 269 (632)
Q Consensus 219 DIseE-La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD~~s~ 269 (632)
.+++| |.+|.+| ||++++|++||++|+||+|||+||||+|+++.+..
T Consensus 27 ~~~ee~I~~Lv~M----GF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip~~ 74 (83)
T 1veg_A 27 SPSQESINQLVYM----GFDTVVAEAALRVFGGNVQLAAQTLAHHGGSLPPD 74 (83)
T ss_dssp CCCHHHHHHHHHH----SCCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCCTT
T ss_pred CCCHHHHHHHHHc----CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCchh
Confidence 45677 9999999 99999999999999999999999999999987633
No 29
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=4.8e-10 Score=92.97 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=43.1
Q ss_pred CchHH-HHHHHHHHHhcCCCHHHHHHHHHHccC-CHHHHHHHHhhcCCCCCCCCC
Q 006751 219 DISEE-LARISEIELRYKCSKQEVERAVVASEG-DLDKAEDTIKVQKQELPATPP 271 (632)
Q Consensus 219 DIseE-La~L~eMevsyGFs~~qAeKALkeTdG-DVERAVEWLFSHpDD~~s~~~ 271 (632)
.++++ |.+|.+| ||++++|++||+.|+| |+|+|++|||+|++|.+-..|
T Consensus 7 ~~~e~~v~~L~~M----GF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d~d~p 57 (74)
T 2dag_A 7 GLDESVIIQLVEM----GFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANP 57 (74)
T ss_dssp SSCHHHHHHHHHH----SCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTTSSSC
T ss_pred CCCHHHHHHHHHc----CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcccccc
Confidence 45677 9999898 9999999999999997 899999999999999765443
No 30
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.01 E-value=3.5e-10 Score=91.63 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=43.5
Q ss_pred chHH-HHHHHHHHHhcCCCHHHHHHHHHHccC-CHHHHHHHHhhcCCCCCCCCCCC
Q 006751 220 ISEE-LARISEIELRYKCSKQEVERAVVASEG-DLDKAEDTIKVQKQELPATPPRP 273 (632)
Q Consensus 220 IseE-La~L~eMevsyGFs~~qAeKALkeTdG-DVERAVEWLFSHpDD~~s~~~kp 273 (632)
.+++ |.+|.+| ||++++|+|||..|+| |+|+|++|||+|.+|++-..|-+
T Consensus 8 ~~e~~v~~L~~M----GF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d~d~p~~ 59 (64)
T 2crn_A 8 SSPSLLEPLLAM----GFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPIS 59 (64)
T ss_dssp CSCSSHHHHHHT----SCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTTSCCSCC
T ss_pred CCHHHHHHHHHc----CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCccccCCCC
Confidence 4455 8899888 9999999999999998 99999999999999987665543
No 31
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.00 E-value=2.8e-10 Score=91.90 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=41.2
Q ss_pred chHH-HHHHHHHHHhcCCCHHHHHHHHHHc-cCCHHHHHHHHhhcCCCCCCCCC
Q 006751 220 ISEE-LARISEIELRYKCSKQEVERAVVAS-EGDLDKAEDTIKVQKQELPATPP 271 (632)
Q Consensus 220 IseE-La~L~eMevsyGFs~~qAeKALkeT-dGDVERAVEWLFSHpDD~~s~~~ 271 (632)
++++ |.+|.+| ||++++|++||+.| +||+|+|++|||+|++|.+-..|
T Consensus 8 ~~~~~v~~L~~M----GF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d~d~p 57 (64)
T 1whc_A 8 AELTALESLIEM----GFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEP 57 (64)
T ss_dssp CCCCHHHHHHTT----TCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSCTTCC
T ss_pred CCHHHHHHHHHc----CCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcccccc
Confidence 3445 8888887 99999999999999 69999999999999999765443
No 32
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.99 E-value=5e-10 Score=95.56 Aligned_cols=42 Identities=29% Similarity=0.252 Sum_probs=39.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcCCc
Q 006751 160 LEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSEE 201 (632)
Q Consensus 160 lE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHMED 201 (632)
.|+.|+||++|||++.+|++||.++++|+|.|++|||.|+++
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 467899999999999999999999999999999999999985
No 33
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.99 E-value=4.9e-10 Score=80.91 Aligned_cols=37 Identities=32% Similarity=0.490 Sum_probs=35.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhh
Q 006751 160 LEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLF 196 (632)
Q Consensus 160 lE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLF 196 (632)
.++.|+||++|||++.+|++||..+++|+|.|++|||
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 4678999999999999999999999999999999997
No 34
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=8.8e-10 Score=93.47 Aligned_cols=50 Identities=12% Similarity=0.234 Sum_probs=44.0
Q ss_pred chHH-HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCCCCCCCCCC
Q 006751 220 ISEE-LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQELPATPPRP 273 (632)
Q Consensus 220 IseE-La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD~~s~~~kp 273 (632)
++++ |.+|.+| ||+.++|++||+.|+||+|+|++|||+|++|..-..|-+
T Consensus 28 ~~e~~i~~L~~M----GF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~d~d~pl~ 78 (83)
T 2dai_A 28 VDEAALRQLTEM----GFPENRATKALQLNHMSVPQAMEWLIEHAEDPTIDTPLS 78 (83)
T ss_dssp CCHHHHHHHHHH----TCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCSTTCCCCC
T ss_pred CCHHHHHHHHHc----CCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcccccCCC
Confidence 4667 9999888 999999999999999999999999999999877655433
No 35
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=9.6e-10 Score=83.26 Aligned_cols=40 Identities=8% Similarity=0.346 Sum_probs=36.1
Q ss_pred CchHH-HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcC
Q 006751 219 DISEE-LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQK 263 (632)
Q Consensus 219 DIseE-La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHp 263 (632)
.++++ |.+|.+| ||+.++|++||+.| ||+|+|++|||+||
T Consensus 7 ~~~~~~v~~L~~M----GF~~~~a~~AL~~~-~n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 7 GVNQQQLQQLMDM----GFTREHAMEALLNT-STMEQATEYLLTHP 47 (47)
T ss_dssp SSCHHHHHHHHHH----HCCHHHHHHHHHHS-CSHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHc----CCCHHHHHHHHHHc-CCHHHHHHHHHcCC
Confidence 34566 9999898 89999999999999 59999999999997
No 36
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.93 E-value=7e-10 Score=82.32 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=34.9
Q ss_pred hHH-HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhc
Q 006751 221 SEE-LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQ 262 (632)
Q Consensus 221 seE-La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSH 262 (632)
++| |.+|.+| ||++++|++||+.|+||+|+|++|||+|
T Consensus 4 ~e~~i~~L~~M----GF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 4 KSLAVEELSGM----GFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHTT----TSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHc----CCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 455 8888887 9999999999999999999999999987
No 37
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.91 E-value=1.1e-09 Score=91.40 Aligned_cols=43 Identities=30% Similarity=0.377 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcCCc
Q 006751 159 KLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSEE 201 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHMED 201 (632)
..++.|+||++|||++.+|.+||.++++|+|.|++|||.|.+.
T Consensus 28 ~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 28 ASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSGP 70 (73)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 3577899999999999999999999999999999999999763
No 38
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.87 E-value=1.6e-09 Score=85.31 Aligned_cols=42 Identities=29% Similarity=0.359 Sum_probs=37.3
Q ss_pred hHHHHHHHHhcCCCHH-HHHHHHHHhCCCHHHHHHHhhhcCCc
Q 006751 160 LEALSQQLVAMGFSSE-RATLALMLNEGRVEESVNWLFEVSEE 201 (632)
Q Consensus 160 lE~LVqQLvAMGFpe~-RCkKALiatNgDVEAAMnWLFEHMED 201 (632)
.++.|+||++|||.+. ++.+||.+++||||.|++|||.|+|.
T Consensus 9 ~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 9 FQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 4678999999999665 57999999999999999999999864
No 39
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.87 E-value=2.4e-09 Score=91.20 Aligned_cols=47 Identities=15% Similarity=0.303 Sum_probs=41.4
Q ss_pred chHH-HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCCCCCCC
Q 006751 220 ISEE-LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQELPATP 270 (632)
Q Consensus 220 IseE-La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD~~s~~ 270 (632)
++++ |.+|.+| ||++++|++||+.+++|+|+|++|||+|++|.+...
T Consensus 20 ~n~~~I~qL~~M----GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D~D~~~ 67 (85)
T 2dkl_A 20 IMSRLIKQLTDM----GFPREPAEEALKSNNMNLDQAMSALLEKKVDVDKRG 67 (85)
T ss_dssp HHHHHHHHHHHH----TCCHHHHHHHHHHTTSCHHHHHHHHHTTSCCSSCCC
T ss_pred cCHHHHHHHHHc----CCCHHHHHHHHHHcCCCHHHHHHHHHHCcCCccccc
Confidence 4456 8888888 999999999999999999999999999999976443
No 40
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.85 E-value=1.7e-09 Score=89.23 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=37.5
Q ss_pred hHHHHHHHHhcCCCHH-HHHHHHHHhCCCHHHHHHHhhhcCCc
Q 006751 160 LEALSQQLVAMGFSSE-RATLALMLNEGRVEESVNWLFEVSEE 201 (632)
Q Consensus 160 lE~LVqQLvAMGFpe~-RCkKALiatNgDVEAAMnWLFEHMED 201 (632)
.+..|+||.+|||.+. ++.+||.+++||||.||+|||+|.+|
T Consensus 19 y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 19 FSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp THHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 3568999999999655 55999999999999999999999986
No 41
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.85 E-value=2.3e-09 Score=83.41 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHccCCHHHHHHHHhhcC
Q 006751 224 LARISEIELRYKC-SKQEVERAVVASEGDLDKAEDTIKVQK 263 (632)
Q Consensus 224 La~L~eMevsyGF-s~~qAeKALkeTdGDVERAVEWLFSHp 263 (632)
|.+|.+| || +.++|++||++|+||+|+|+||||+||
T Consensus 16 l~~L~~M----GF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 16 LEQLSAM----GFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp HHHHHHT----TCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHc----CCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 8888888 99 999999999999999999999999997
No 42
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.84 E-value=6.9e-10 Score=85.04 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCCC
Q 006751 224 LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQEL 266 (632)
Q Consensus 224 La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD~ 266 (632)
|++|.+| ||++.+|.+||.+|++|+++|++|||+|++|.
T Consensus 8 I~rL~~m----GF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d~ 46 (47)
T 1dv0_A 8 IERLKAL----GFPESLVIQAYFACEKNENLAANFLLSQNFDD 46 (47)
T ss_dssp HTTTTTT----TCCHHHHHHHHTTTTSCHHHHHHHTTSCCCCC
T ss_pred HHHHHHc----CCCHHHHHHHHHHcCCCHHHHHHHHHhCcCCC
Confidence 7777777 99999999999999999999999999999984
No 43
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.84 E-value=5.7e-09 Score=82.20 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCCHHH-HHHHHHHccCCHHHHHHHHhhcCCCC
Q 006751 222 EELARISEIELRYKCSKQE-VERAVVASEGDLDKAEDTIKVQKQEL 266 (632)
Q Consensus 222 eELa~L~eMevsyGFs~~q-AeKALkeTdGDVERAVEWLFSHpDD~ 266 (632)
+.|.+|.+| ||+..+ +++||++|+|||++||||||+|++..
T Consensus 11 ~~l~~L~~M----GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~~ 52 (54)
T 2dah_A 11 VQLEQLRSM----GFLNREANLQALIATGGDVDAAVEKLRQSSGPS 52 (54)
T ss_dssp HHHHHHHHH----TCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHc----CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcC
Confidence 349999999 996654 69999999999999999999999864
No 44
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.83 E-value=5.2e-09 Score=88.71 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=43.0
Q ss_pred CchHH-HHHHHHHHHhcCCCHHHHHHHHHHcc-CCHHHHHHHHhhcCCCCCCCCC
Q 006751 219 DISEE-LARISEIELRYKCSKQEVERAVVASE-GDLDKAEDTIKVQKQELPATPP 271 (632)
Q Consensus 219 DIseE-La~L~eMevsyGFs~~qAeKALkeTd-GDVERAVEWLFSHpDD~~s~~~ 271 (632)
.++++ |.+|.+| ||++.+|++||..|+ +|+|+|++|||+|++|.+-..|
T Consensus 27 ~~~e~~v~~L~~M----GF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d~d~p 77 (84)
T 1vek_A 27 VANEEIVAQLVSM----GFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDAP 77 (84)
T ss_dssp CCCHHHHHHHHHH----TCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSTTTSC
T ss_pred CCCHHHHHHHHHc----CCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccccccC
Confidence 45677 9999888 999999999999996 7999999999999999775544
No 45
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.82 E-value=3.7e-09 Score=88.48 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHHhhhcCCcc
Q 006751 161 EALSQQLVAMGF-SSERATLALMLNEGRVEESVNWLFEVSEEE 202 (632)
Q Consensus 161 E~LVqQLvAMGF-pe~RCkKALiatNgDVEAAMnWLFEHMEDp 202 (632)
++.|+||++||| .+.++.+||.+++||||.|++|||.|++.+
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 557899999999 578889999999999999999999998753
No 46
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.82 E-value=3e-09 Score=81.81 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=34.7
Q ss_pred hHH-HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhc
Q 006751 221 SEE-LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQ 262 (632)
Q Consensus 221 seE-La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSH 262 (632)
.++ |.+|.+| ||++++|++||++|+||+|+|+||||++
T Consensus 8 ~~~~i~~L~~M----GF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 8 YETMLTEIMSM----GYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHT----TCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred CHHHHHHHHHc----CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 345 8888888 9999999999999999999999999997
No 47
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.80 E-value=5.1e-09 Score=80.02 Aligned_cols=39 Identities=31% Similarity=0.358 Sum_probs=35.4
Q ss_pred hHHHHHHHHhcCCC-HHHHHHHHHHhCCCHHHHHHHhhhc
Q 006751 160 LEALSQQLVAMGFS-SERATLALMLNEGRVEESVNWLFEV 198 (632)
Q Consensus 160 lE~LVqQLvAMGFp-e~RCkKALiatNgDVEAAMnWLFEH 198 (632)
.++.|+||++|||. +.++.+||.+++||+|.|++|||.|
T Consensus 7 ~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 7 YEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 46789999999995 6778999999999999999999986
No 48
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.79 E-value=4.4e-09 Score=86.81 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCCHHHH-HHHHHHccCCHHHHHHHHhhcCCCC
Q 006751 224 LARISEIELRYKCSKQEV-ERAVVASEGDLDKAEDTIKVQKQEL 266 (632)
Q Consensus 224 La~L~eMevsyGFs~~qA-eKALkeTdGDVERAVEWLFSHpDD~ 266 (632)
|++|.+| ||...++ .+||++|+|||||||||||+|+++.
T Consensus 23 l~qL~~M----GF~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 23 MECLQAM----GFVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHHHHHH----TCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred HHHHHHc----CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 7777777 9865555 9999999999999999999999985
No 49
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.78 E-value=7.7e-09 Score=86.22 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=38.3
Q ss_pred chHH-HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCCC
Q 006751 220 ISEE-LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQEL 266 (632)
Q Consensus 220 IseE-La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD~ 266 (632)
..+| |.+|.+| ||++++|++||+.|+||+|+|+||||+|.+..
T Consensus 28 ~~ee~I~~L~eM----GF~r~~a~~AL~~~~~nve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 28 ASEEQIQKLVAM----GFDRTQVEVALAAADDDLTVAVEILMSQSGPS 71 (73)
T ss_dssp CCHHHHHHHHTT----TCCHHHHHHHHHHHTSCHHHHHHHHHTCSCSS
T ss_pred ccHHHHHHHHHc----CCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence 3455 8888888 99999999999999999999999999997754
No 50
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=98.78 E-value=4.8e-09 Score=81.81 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHccCCHHHHHHHHhhcC
Q 006751 224 LARISEIELRYKC-SKQEVERAVVASEGDLDKAEDTIKVQK 263 (632)
Q Consensus 224 La~L~eMevsyGF-s~~qAeKALkeTdGDVERAVEWLFSHp 263 (632)
|.+|.+| || +.++|++||++|+||+++|+||||+|+
T Consensus 15 l~~L~~M----GF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 15 LEQLNSM----GFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHTT----TCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHc----CCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 6667666 99 999999999999999999999999996
No 51
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.77 E-value=6.6e-09 Score=83.17 Aligned_cols=39 Identities=31% Similarity=0.362 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHHhCCCHHHHHHHhhhcC
Q 006751 161 EALSQQLVAMGFS-SERATLALMLNEGRVEESVNWLFEVS 199 (632)
Q Consensus 161 E~LVqQLvAMGFp-e~RCkKALiatNgDVEAAMnWLFEHM 199 (632)
++.|+||++|||. +.++.+||.+++||+|.|++|||.|+
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 5678999999995 77889999999999999999999985
No 52
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.74 E-value=1.2e-08 Score=85.35 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHccCCHHHHHHHHhhcCCCC
Q 006751 223 ELARISEIELRYKC-SKQEVERAVVASEGDLDKAEDTIKVQKQEL 266 (632)
Q Consensus 223 ELa~L~eMevsyGF-s~~qAeKALkeTdGDVERAVEWLFSHpDD~ 266 (632)
.|.+|.+| || +.+++++||++++|||+|||||||+|++.+
T Consensus 32 qi~qL~eM----GF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 32 ELEELKAL----GFANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp HHHHHHHH----TCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHc----CCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 38888888 99 588889999999999999999999998865
No 53
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.72 E-value=1.6e-08 Score=90.42 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcC
Q 006751 162 ALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVS 199 (632)
Q Consensus 162 ~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHM 199 (632)
.+|.||++|||++.+|++||+.||||+|.|++|||..-
T Consensus 78 ~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 78 QLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 46999999999999999999999999999999999763
No 54
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.72 E-value=1.3e-08 Score=81.56 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHccCCHHHHHHHHhhcC
Q 006751 224 LARISEIELRYKCS-KQEVERAVVASEGDLDKAEDTIKVQK 263 (632)
Q Consensus 224 La~L~eMevsyGFs-~~qAeKALkeTdGDVERAVEWLFSHp 263 (632)
|.+|.+| ||+ .+.+++||++|+||++|||||||+||
T Consensus 21 i~~L~~M----GF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 21 LRQLNDM----GFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHH----TCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHc----CCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 7777777 995 77889999999999999999999986
No 55
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.68 E-value=1.8e-08 Score=77.06 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHccCCHHHHHHHHhhc
Q 006751 224 LARISEIELRYKCS-KQEVERAVVASEGDLDKAEDTIKVQ 262 (632)
Q Consensus 224 La~L~eMevsyGFs-~~qAeKALkeTdGDVERAVEWLFSH 262 (632)
|.+|.+| ||+ .+.+++||++|+||++|||||||+|
T Consensus 11 i~~L~~M----GF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 11 LRQLNDM----GFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHHHHHT----TCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHc----CCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 7788777 995 6778999999999999999999986
No 56
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.67 E-value=1.9e-08 Score=72.52 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHh
Q 006751 224 LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIK 260 (632)
Q Consensus 224 La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLF 260 (632)
|.+|.+| ||+.++|++||+.|+||+++|++|||
T Consensus 8 i~~L~~m----Gf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 8 IAQLVSM----GFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHT----TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHc----CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 8888787 99999999999999999999999997
No 57
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.40 E-value=2.5e-07 Score=82.32 Aligned_cols=41 Identities=24% Similarity=0.337 Sum_probs=37.0
Q ss_pred hHHHHHHHHhcCCC-HHHHHHHHHHhCCCHHHHHHHhhhcCC
Q 006751 160 LEALSQQLVAMGFS-SERATLALMLNEGRVEESVNWLFEVSE 200 (632)
Q Consensus 160 lE~LVqQLvAMGFp-e~RCkKALiatNgDVEAAMnWLFEHME 200 (632)
.++.|+||++|||. +.+|.+||.+++||||.||+|||++..
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 47788999999995 579999999999999999999999853
No 58
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.38 E-value=2e-07 Score=74.53 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHh-CCCHHHHHHHhhh
Q 006751 162 ALSQQLVAMGFSSERATLALMLN-EGRVEESVNWLFE 197 (632)
Q Consensus 162 ~LVqQLvAMGFpe~RCkKALiat-NgDVEAAMnWLFE 197 (632)
..+++|+.|||+.+|+.+||..| |.++|+||+||+.
T Consensus 11 qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 11 QMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 45899999999999999999998 6699999999964
No 59
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.25 E-value=6.9e-07 Score=79.45 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCC-CHHHHHHHHHHccCCHHHHHHHHhhcCC
Q 006751 222 EELARISEIELRYKC-SKQEVERAVVASEGDLDKAEDTIKVQKQ 264 (632)
Q Consensus 222 eELa~L~eMevsyGF-s~~qAeKALkeTdGDVERAVEWLFSHpD 264 (632)
+.|.+|.+| || +.+++.+||++++|||||||||||+++.
T Consensus 68 ~qL~qL~eM----GF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 68 PQLQQLRDM----GIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp HHHHHHHTT----TCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHc----CCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 338999888 99 5689999999999999999999999874
No 60
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.18 E-value=3.1e-07 Score=94.88 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=41.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcCCcc
Q 006751 159 KLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSEEE 202 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHMEDp 202 (632)
-.++.|++|++|||++..|.+||.+|++|+|.|++|||+|++|.
T Consensus 324 ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~~~~d~ 367 (368)
T 1oqy_A 324 QEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDD 367 (368)
T ss_dssp TTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHHHCCC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhhCcCcC
Confidence 46789999999999999999999999999999999999999873
No 61
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.05 E-value=5.1e-06 Score=66.09 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=36.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhc
Q 006751 159 KLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEV 198 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEH 198 (632)
..++.|++|++|||++..+.+||..+++|+|.|-+.|+|-
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4568999999999999999999999999999999999873
No 62
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=97.93 E-value=1.7e-05 Score=75.04 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=37.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhc
Q 006751 159 KLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEV 198 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEH 198 (632)
..++.|++|++|||++..|..||-.+++|+|.|++|||+|
T Consensus 162 ~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~~ 201 (201)
T 3k9o_A 162 EYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLSN 201 (201)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 3489999999999999999999999999999999999986
No 63
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=97.92 E-value=6e-06 Score=92.61 Aligned_cols=55 Identities=29% Similarity=0.511 Sum_probs=50.0
Q ss_pred HHHHHHHHhhh---------------------------hhHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcCC
Q 006751 148 HERCCGYLMSR---------------------------KLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSE 200 (632)
Q Consensus 148 hERC~~yLmsR---------------------------KlE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHME 200 (632)
-|.++.+|+++ ..++.|++|.+|||...+|++||.++++|+|.|++|||.|+|
T Consensus 681 ~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d 760 (854)
T 3ihp_A 681 AEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHID 760 (854)
T ss_dssp HHHHHHHHHHHTTSCGGGSCCCCC--------------CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHhHHHhhccCcccccccccccccccccccccccCCCCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCcc
Confidence 57889999877 356899999999999999999999999999999999999998
Q ss_pred cc
Q 006751 201 EE 202 (632)
Q Consensus 201 Dp 202 (632)
|.
T Consensus 761 ~~ 762 (854)
T 3ihp_A 761 DL 762 (854)
T ss_dssp HH
T ss_pred cc
Confidence 74
No 64
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.91 E-value=1.1e-05 Score=64.49 Aligned_cols=40 Identities=28% Similarity=0.372 Sum_probs=37.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcC
Q 006751 160 LEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVS 199 (632)
Q Consensus 160 lE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHM 199 (632)
.|+-|++|++|||+.+.+.+||..+++|+|.|-+.|.|..
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 4667999999999999999999999999999999998764
No 65
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=97.87 E-value=1.4e-05 Score=64.38 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=39.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcCC
Q 006751 159 KLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSE 200 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHME 200 (632)
..|+.|++|++|||+.+.+.+||...++|||.|-|.|+|-.-
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf~~ 47 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFVS 47 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHSCC
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHHHc
Confidence 568899999999999999999999999999999999998753
No 66
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.81 E-value=1.8e-05 Score=75.18 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcCCc
Q 006751 161 EALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSEE 201 (632)
Q Consensus 161 E~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHMED 201 (632)
++.|++|++|||++..|..||++|++|+|.|.+|||+++.|
T Consensus 131 ~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~~~d 171 (171)
T 2qsf_X 131 DQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDHAD 171 (171)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC---
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 35688999999999999999999999999999999999865
No 67
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.74 E-value=4.6e-05 Score=67.73 Aligned_cols=42 Identities=26% Similarity=0.420 Sum_probs=39.3
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHHhhhcCCc
Q 006751 160 LEALSQQLVAM-GFSSERATLALMLNEGRVEESVNWLFEVSEE 201 (632)
Q Consensus 160 lE~LVqQLvAM-GFpe~RCkKALiatNgDVEAAMnWLFEHMED 201 (632)
.++.|.+|+.| ||++..|.+||..+|+|++.|++.||+...|
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 47789999999 9999999999999999999999999999864
No 68
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.74 E-value=2.8e-05 Score=62.17 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHHhhhcCCc
Q 006751 161 EALSQQLVAMGF-SSERATLALMLNEGRVEESVNWLFEVSEE 201 (632)
Q Consensus 161 E~LVqQLvAMGF-pe~RCkKALiatNgDVEAAMnWLFEHMED 201 (632)
..+++||.+||| .+.+..+||..+|+||+.||+.|+...+.
T Consensus 10 a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~ 51 (54)
T 2cp8_A 10 AALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGP 51 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 468999999999 88888889988999999999999987754
No 69
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=97.71 E-value=4.5e-05 Score=59.45 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=38.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcC
Q 006751 159 KLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVS 199 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHM 199 (632)
.+|+-++.|++|||..+.+.+||..+++|+|.|-|-|.|..
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~ 43 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFA 43 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999998753
No 70
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.63 E-value=0.00011 Score=58.75 Aligned_cols=38 Identities=21% Similarity=0.403 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhc
Q 006751 221 SEELARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQ 262 (632)
Q Consensus 221 seELa~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSH 262 (632)
..+|++|.+| ||++++|.+||+.++||||.|.+.|++.
T Consensus 10 e~~I~~L~~l----GF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 10 SSEIERLMSQ----GYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp HHHHHHHHHH----TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHc----CCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3448999888 9999999999999999999999999864
No 71
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=97.62 E-value=7e-05 Score=61.46 Aligned_cols=42 Identities=24% Similarity=0.257 Sum_probs=35.5
Q ss_pred CchHH-HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcC
Q 006751 219 DISEE-LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQK 263 (632)
Q Consensus 219 DIseE-La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHp 263 (632)
.|+.+ |..|.+. -|.+..+|++||.+|+|||++|++||+..-
T Consensus 7 ~it~~~Vk~LRe~---TGag~~dcKkAL~e~~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 7 GSSKELLMKLRRK---TGYSFVNCKKALETCGGDLKQAEIWLHKEA 49 (64)
T ss_dssp CCCCHHHHHHHHH---HCCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH---hCCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 45555 7777666 499999999999999999999999998764
No 72
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=97.61 E-value=7e-05 Score=59.65 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhh
Q 006751 220 ISEELARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKV 261 (632)
Q Consensus 220 IseELa~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFS 261 (632)
+.++|++|.+| ||++++|.+||+.++||||-|...|.+
T Consensus 11 ~~~~Ia~Lm~m----GFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 11 VDAKIAKLMGE----GYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp CHHHHHHHHHT----TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHc----CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44559999888 999999999999999999999999865
No 73
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.61 E-value=5.3e-05 Score=67.34 Aligned_cols=41 Identities=17% Similarity=0.295 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCC
Q 006751 222 EELARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQE 265 (632)
Q Consensus 222 eELa~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD 265 (632)
+.|.+|++| .||++++|++||.+|+||+++|++.||+...|
T Consensus 41 ekVk~L~Em---tG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 41 EKVKQLIDI---TGKNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHH---TCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred HHHHHHHHh---hCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 348888887 49999999999999999999999999988754
No 74
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.52 E-value=0.00012 Score=58.68 Aligned_cols=39 Identities=15% Similarity=0.345 Sum_probs=32.4
Q ss_pred CchHH-HHHHHHHHHhcCCCHHHHHHHHHHccC-CHHHHHHHHhh
Q 006751 219 DISEE-LARISEIELRYKCSKQEVERAVVASEG-DLDKAEDTIKV 261 (632)
Q Consensus 219 DIseE-La~L~eMevsyGFs~~qAeKALkeTdG-DVERAVEWLFS 261 (632)
+++.. |.+|.+| ||+++.|++||+.|+| .|+.|+|||.-
T Consensus 7 ~vn~qmlq~L~eM----GFd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 7 GVNRQMLQELVNA----GCDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp SCCHHHHHHHHHH----HCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHc----CCCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34444 6667677 9999999999999998 79999999963
No 75
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=97.48 E-value=7.8e-05 Score=70.54 Aligned_cols=35 Identities=11% Similarity=0.223 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhc
Q 006751 224 LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQ 262 (632)
Q Consensus 224 La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSH 262 (632)
|.+|.+| ||++++|+.||..+++|+++|+|+||+|
T Consensus 167 V~~l~~M----Gf~~~~a~~AL~~~~wd~~~A~e~L~~~ 201 (201)
T 3k9o_A 167 IENLCAM----GFDRNAVIVALSSKSWDVETATELLLSN 201 (201)
T ss_dssp HHHHHTT----TCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred HHHHHHc----CCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 7777777 9999999999999999999999999986
No 76
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.23 E-value=0.00023 Score=67.62 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCC
Q 006751 224 LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQE 265 (632)
Q Consensus 224 La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD 265 (632)
|++|++| ||++.+|.+|+.+|++|.+.|++|||+++.|
T Consensus 134 I~rL~~m----GF~r~~viqA~~ac~knee~Aan~L~~~~~d 171 (171)
T 2qsf_X 134 ISRLCEL----GFERDLVIQVYFACDKNEEAAANILFSDHAD 171 (171)
T ss_dssp HHHHHTT----TCCHHHHHHHHHHTTTCHHHHHHHHTTC---
T ss_pred HHHHHHc----CCCHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 7777766 9999999999999999999999999999865
No 77
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.13 E-value=0.00091 Score=53.50 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHccCCHHHHHHHHhhcCCC
Q 006751 224 LARISEIELRYKC-SKQEVERAVVASEGDLDKAEDTIKVQKQE 265 (632)
Q Consensus 224 La~L~eMevsyGF-s~~qAeKALkeTdGDVERAVEWLFSHpDD 265 (632)
|++|.+| || +.+.-.+||+.++|||++||+.|......
T Consensus 13 L~~L~eM----GF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~ 51 (54)
T 2cp8_A 13 MAHLFEM----GFCDRQLNLRLLKKHNYNILQVVTELLQLSGP 51 (54)
T ss_dssp HHHHHHH----TCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSS
T ss_pred HHHHHHc----CCCcHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 8899999 99 99999999999999999999999987653
No 78
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=97.00 E-value=0.00081 Score=52.49 Aligned_cols=39 Identities=18% Similarity=0.390 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhc
Q 006751 220 ISEELARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQ 262 (632)
Q Consensus 220 IseELa~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSH 262 (632)
+..+|++|.+| ||+.+.|+|||.-+.+|||.|.+-|.+.
T Consensus 4 ~e~~I~~L~s~----Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 4 LSSEIENLMSQ----GYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHHHHHT----TBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHc----CCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 34558888777 9999999999999999999999999764
No 79
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=96.67 E-value=0.0014 Score=52.91 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCC
Q 006751 224 LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQ 264 (632)
Q Consensus 224 La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpD 264 (632)
|++|.+| ||+.+.|.+||..+++||+.|.+.|.+---
T Consensus 11 Ia~L~sm----Gfsr~da~~AL~ia~Ndv~~AtNiLlEf~~ 47 (56)
T 2juj_A 11 IENLMSQ----GYSYQDIQKALVIAQNNIEMAKNILREFVS 47 (56)
T ss_dssp HHHHHTT----TCCHHHHHHHHHHTTTCSHHHHHHHHHSCC
T ss_pred HHHHHHc----CCCHHHHHHHHHHhcccHHHHHHHHHHHHc
Confidence 8888777 999999999999999999999999987543
No 80
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=96.59 E-value=0.0043 Score=61.49 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=36.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhh
Q 006751 159 KLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFE 197 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFE 197 (632)
..++.|++|++|||++..+..||-.+|.|+|.|++.||.
T Consensus 214 ~~~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 214 EYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 348999999999999999999999999999999999996
No 81
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.44 E-value=0.0063 Score=48.86 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=39.0
Q ss_pred chHH-HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCCCC
Q 006751 220 ISEE-LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQELP 267 (632)
Q Consensus 220 IseE-La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD~~ 267 (632)
+.+| |+.|.+| ==.++.+.++.+|++|+||+|+|++-|++.-++..
T Consensus 8 ~~ee~l~~L~em--FP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~ 54 (59)
T 1wgl_A 8 CSEEDLKAIQDM--FPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPS 54 (59)
T ss_dssp SCHHHHHHHHHH--CSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCC
T ss_pred CCHHHHHHHHHH--CCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCC
Confidence 4566 9999999 12358999999999999999999999999877654
No 82
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=96.28 E-value=0.0046 Score=50.79 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=32.6
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHhCCCHHHHHHHhhhcC
Q 006751 162 ALSQQLVA-MGFSSERATLALMLNEGRVEESVNWLFEVS 199 (632)
Q Consensus 162 ~LVqQLvA-MGFpe~RCkKALiatNgDVEAAMnWLFEHM 199 (632)
++|.+|.. -|.+...|++||..+|||+|+|+.||-+..
T Consensus 11 ~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 11 ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEA 49 (64)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 45666765 499999999999999999999999997664
No 83
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=96.14 E-value=0.0086 Score=46.84 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCC
Q 006751 220 ISEELARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQE 265 (632)
Q Consensus 220 IseELa~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD 265 (632)
+.+++..|.+|- =.++..+++.+|++++||+++|++-|-+...|
T Consensus 4 ~e~~v~~L~EMF--P~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~~ 47 (49)
T 1otr_A 4 HESKLSILMDMF--PAISKSKLQVHLLENNNDLDLTIGLLLKENDD 47 (49)
T ss_dssp HHHHHHHHHHHC--SSSCHHHHHHHHHHTTTCSHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHC--CCCCHHHHHHHHHHcCCCHHHHHHHHHhcccc
Confidence 334499999991 13568999999999999999999999887555
No 84
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=95.95 E-value=0.0072 Score=61.26 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhh
Q 006751 224 LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKV 261 (632)
Q Consensus 224 La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFS 261 (632)
|-.|.++ -|...-.++|||.+|+||+|+|+|||+.
T Consensus 8 VKeLRe~---TGagmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 8 LMKLRRK---TGYSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHH---HCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHH---hCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5555555 5999999999999999999999999997
No 85
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=95.90 E-value=0.0082 Score=58.27 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=30.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhc
Q 006751 227 ISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQ 262 (632)
Q Consensus 227 L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSH 262 (632)
|.++-.+-|...-.+++||.+|+||+|+|+|||+..
T Consensus 7 VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR~k 42 (196)
T 1aip_C 7 IKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRER 42 (196)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 333333459999999999999999999999999974
No 86
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=95.61 E-value=0.011 Score=58.56 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhc
Q 006751 224 LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQ 262 (632)
Q Consensus 224 La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSH 262 (632)
|.+|.+| ||++++|+.||..+++|+++|+|.||++
T Consensus 219 v~~l~~m----gf~~~~~~~al~~~nWd~~~A~e~L~~~ 253 (253)
T 3e46_A 219 IENLCAA----GFDRNAVIVALSSKSWDVETATELLLSN 253 (253)
T ss_dssp HHHHHHT----TCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred HHHHHHc----CCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 7777777 9999999999999999999999999974
No 87
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=95.43 E-value=0.015 Score=51.12 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=32.0
Q ss_pred CchHH-HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHH
Q 006751 219 DISEE-LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTI 259 (632)
Q Consensus 219 DIseE-La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWL 259 (632)
.|++| |+.|.+- .|++.++|++||++|+|||-.|+-+|
T Consensus 63 ~i~~edi~lv~~q---~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 63 EIPEDDIELVMNQ---TGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCHHHHHHHHHH---HCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHHHHHHHHH---hCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 46666 8888544 59999999999999999999998765
No 88
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=94.62 E-value=0.035 Score=44.55 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=36.1
Q ss_pred hhHHHHHHHHhcCCC---HHHHHHHHHHhCCCHHHHHHHhhhcCCc
Q 006751 159 KLEALSQQLVAMGFS---SERATLALMLNEGRVEESVNWLFEVSEE 201 (632)
Q Consensus 159 KlE~LVqQLvAMGFp---e~RCkKALiatNgDVEAAMnWLFEHMED 201 (632)
-.|+.+++|.+| || ....+++|.+++||+|+|++-||+.-++
T Consensus 8 ~~ee~l~~L~em-FP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 8 CSEEDLKAIQDM-FPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp SCHHHHHHHHHH-CSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred CCHHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence 357899999999 86 5678888888999999999999997654
No 89
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=93.87 E-value=0.051 Score=55.13 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=31.6
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHHhhh
Q 006751 162 ALSQQLVAM-GFSSERATLALMLNEGRVEESVNWLFE 197 (632)
Q Consensus 162 ~LVqQLvAM-GFpe~RCkKALiatNgDVEAAMnWLFE 197 (632)
.+|.+|..+ |.+.--|||||..+|||+|.|++||-+
T Consensus 6 ~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 6 ELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 456666554 899999999999999999999999997
No 90
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=93.64 E-value=0.04 Score=44.04 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=30.9
Q ss_pred hHHHHHHHHhcCCCHHHHH--HHHHHhCCCHHHHHHHh
Q 006751 160 LEALSQQLVAMGFSSERAT--LALMLNEGRVEESVNWL 195 (632)
Q Consensus 160 lE~LVqQLvAMGFpe~RCk--KALiatNgDVEAAMnWL 195 (632)
+++.|.||++|||..+-.- +.|...++|+.+|++=|
T Consensus 10 l~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 10 LIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHh
Confidence 6788999999999988774 77777899999999865
No 91
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=93.35 E-value=0.076 Score=51.57 Aligned_cols=38 Identities=24% Similarity=0.096 Sum_probs=32.5
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHHhhhcC
Q 006751 162 ALSQQLVAM-GFSSERATLALMLNEGRVEESVNWLFEVS 199 (632)
Q Consensus 162 ~LVqQLvAM-GFpe~RCkKALiatNgDVEAAMnWLFEHM 199 (632)
.+|.+|..+ |.+--.|+|||..+|||+|.|++||-+.+
T Consensus 5 ~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR~kG 43 (196)
T 1aip_C 5 ELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERG 43 (196)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 456667554 88999999999999999999999998765
No 92
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.03 E-value=0.17 Score=40.48 Aligned_cols=40 Identities=13% Similarity=0.063 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCCC
Q 006751 224 LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQEL 266 (632)
Q Consensus 224 La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD~ 266 (632)
|.+.+++ -|++..+|+.-|..+++|+|+||+-.|.+++..
T Consensus 19 i~qF~~i---Tg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~~~ 58 (62)
T 2dal_A 19 IQQFTTI---TGASESVGKHMLEACNNNLEMAVTMFLDGGGSG 58 (62)
T ss_dssp HHHHHHH---TCCCHHHHHHHHHTTTSCHHHHHHHHHHSCCCC
T ss_pred HHHHHHH---hCCCHHHHHHHHHHcCCCHHHHHHHHHcCCCCC
Confidence 6666665 499999999999999999999999999988654
No 93
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=92.75 E-value=0.16 Score=37.45 Aligned_cols=37 Identities=11% Similarity=0.043 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcC
Q 006751 224 LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQK 263 (632)
Q Consensus 224 La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHp 263 (632)
|.+.+++ -|++..+|+.-|..+++|+|+|++-.|.++
T Consensus 9 i~~F~~i---Tg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 9 LREFVAV---TGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHH---TCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHH---hCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 6666555 399999999999999999999999999875
No 94
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.61 E-value=0.26 Score=40.11 Aligned_cols=42 Identities=7% Similarity=0.089 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHccCCHHHHHHHHhhcCCCCCC
Q 006751 224 LARISEIELRYK-CSKQEVERAVVASEGDLDKAEDTIKVQKQELPA 268 (632)
Q Consensus 224 La~L~eMevsyG-Fs~~qAeKALkeTdGDVERAVEWLFSHpDD~~s 268 (632)
|.+.+++- | .+..+|+..|..+++|||.||.-.|.+.++.|+
T Consensus 22 i~qF~~IT---g~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~~~p~ 64 (67)
T 2dam_A 22 LLQFQDLT---GIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGSGP 64 (67)
T ss_dssp HHHHHHHH---CCSCHHHHHHHHHHHTSCHHHHHHHHHHSSCSSCS
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCC
Confidence 66665653 8 899999999999999999999999999876654
No 95
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=92.60 E-value=0.23 Score=47.32 Aligned_cols=70 Identities=27% Similarity=0.287 Sum_probs=54.2
Q ss_pred HHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcCCcccCCCCCcccCCCCCCCCchHHHHHHHHHHHhcC-----CCHHHH
Q 006751 167 LVAMGFSSERATLALMLNEGRVEESVNWLFEVSEEEARNTDPKLESSGSLKIDISEELARISEIELRYK-----CSKQEV 241 (632)
Q Consensus 167 LvAMGFpe~RCkKALiatNgDVEAAMnWLFEHMEDpDiD~P~~l~s~~~~~iDIseELa~L~eMevsyG-----Fs~~qA 241 (632)
-+-.||+.+.-..||.-++ + +-=+.||-+.... + |++|+.|.+++| ++.++|
T Consensus 24 aEk~GfspEEV~aAl~~~g-~-~~P~~WLk~ewp~--------l-------------l~~V~~la~~~~~~~g~~s~~EA 80 (162)
T 4dbg_B 24 GEAAGACPEEIFSALQYSG-T-EVPLQWLRSELPY--------V-------------LEMVAELAGQQDPGLGAFSCQEA 80 (162)
T ss_dssp TCCSCCCHHHHHHHHHHHT-C-CCCHHHHHHHSCS--------H-------------HHHHHHHHHHHCGGGCCCCHHHH
T ss_pred HHHcCCCHHHHHHHHHhcC-C-CCcHHHHHHHHHH--------H-------------HHHHHHHHHHhCCCCCcccHHHH
Confidence 4567999999999995444 2 2389999776431 2 566777777774 888999
Q ss_pred HHHHHHccCCHHHHHHHH
Q 006751 242 ERAVVASEGDLDKAEDTI 259 (632)
Q Consensus 242 eKALkeTdGDVERAVEWL 259 (632)
++|++..+||+++||.-+
T Consensus 81 r~Aw~~~~Gd~~~Av~~c 98 (162)
T 4dbg_B 81 RRAWLDRHGNLDEAVEEC 98 (162)
T ss_dssp HHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHccCChHHHHHHH
Confidence 999999999999999854
No 96
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=92.49 E-value=0.51 Score=44.92 Aligned_cols=63 Identities=19% Similarity=0.291 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHhhhcCCcccCCCCCcccCCCCCCCCchHHHHHHHHHHHhcC-CCHHHHHHHHHHccC
Q 006751 172 FSSERATLALMLNEGRVEESVNWLFEVSEEEARNTDPKLESSGSLKIDISEELARISEIELRYK-CSKQEVERAVVASEG 250 (632)
Q Consensus 172 Fpe~RCkKALiatNgDVEAAMnWLFEHMEDpDiD~P~~l~s~~~~~iDIseELa~L~eMevsyG-Fs~~qAeKALkeTdG 250 (632)
|+...|+.||+..+||++.|+.-+.+. -...+.++ .++| |+.+++.+||.+..|
T Consensus 75 ~s~~EAr~Aw~~~~Gd~~~Av~~ci~~------------------------R~~K~~eL-~s~G~~~~~~~~~aL~~~~G 129 (162)
T 4dbg_B 75 FSCQEARRAWLDRHGNLDEAVEECVRT------------------------RRRKVQEL-QSLGFGPEEGSLQALFQHGG 129 (162)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH------------------------HHHHHHHH-HHTTCCGGGTHHHHHHHTTT
T ss_pred ccHHHHHHHHHHccCChHHHHHHHHHH------------------------HHHHHHHH-HhcCCchHHHHHHHHHHcCC
Confidence 777899999988899999988875332 13334232 3457 899999999999999
Q ss_pred CHHHHHHHH
Q 006751 251 DLDKAEDTI 259 (632)
Q Consensus 251 DVERAVEWL 259 (632)
||++|+-=|
T Consensus 130 dv~~Al~eL 138 (162)
T 4dbg_B 130 DVSRALTEL 138 (162)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 999998766
No 97
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.43 E-value=0.18 Score=41.55 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=35.0
Q ss_pred chHHHHHHHHHHHhc-CCCHHHHHHHHHHccCCHHHHHHHHhhcCCC
Q 006751 220 ISEELARISEIELRY-KCSKQEVERAVVASEGDLDKAEDTIKVQKQE 265 (632)
Q Consensus 220 IseELa~L~eMevsy-GFs~~qAeKALkeTdGDVERAVEWLFSHpDD 265 (632)
..+.+..|.+| | .++.+.++..|++|+||+++|++-|.+.-++
T Consensus 18 ~~~~v~~L~~M---FP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~ 61 (67)
T 2dhy_A 18 FNQAMDDFKTM---FPNMDYDIIECVLRANSGAVDATIDQLLQMNLE 61 (67)
T ss_dssp SHHHHHHHHHH---CSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH---CCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Confidence 33449999999 2 2479999999999999999999999875443
No 98
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.26 E-value=0.17 Score=41.73 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=35.1
Q ss_pred hhHHHHHHHHhcCCCH---HHHHHHHHHhCCCHHHHHHHhhhcCCc
Q 006751 159 KLEALSQQLVAMGFSS---ERATLALMLNEGRVEESVNWLFEVSEE 201 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe---~RCkKALiatNgDVEAAMnWLFEHMED 201 (632)
..+..+++|.+| ||. ...+..|.+++||+++||+=|++-.++
T Consensus 17 ~~~~~v~~L~~M-FP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~ 61 (67)
T 2dhy_A 17 EFNQAMDDFKTM-FPNMDYDIIECVLRANSGAVDATIDQLLQMNLE 61 (67)
T ss_dssp CSHHHHHHHHHH-CSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Confidence 457889999999 974 567788888999999999999986543
No 99
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.03 E-value=0.4 Score=39.03 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCC
Q 006751 224 LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQE 265 (632)
Q Consensus 224 La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD 265 (632)
|.+.+++- |++..+|+..|..+++|+|+|++-.|++++-
T Consensus 21 i~qF~~iT---g~~~~~A~~~Le~~~WdLe~Al~~ff~~~~~ 59 (66)
T 2dzl_A 21 INQFVLAA---GCAADQAKQLLQAAHWQFETALSTFFQETNI 59 (66)
T ss_dssp HHHHHHHH---CCCHHHHHHHHHTTTTCHHHHHHHHHTCSCC
T ss_pred HHHHHHHc---CCCHHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence 66666653 9999999999999999999999999987653
No 100
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=90.63 E-value=0.083 Score=51.16 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhc
Q 006751 160 LEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEV 198 (632)
Q Consensus 160 lE~LVqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEH 198 (632)
.++.|++|++|||.+..+..||-..+-|++.|++-||..
T Consensus 177 ~~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~~ 215 (216)
T 2pwq_A 177 REVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLEN 215 (216)
T ss_dssp ---------------------------------------
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 378999999999999999999999999999999999864
No 101
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=85.80 E-value=0.16 Score=46.85 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHccCCHHHHHHHHhhcCCCC
Q 006751 224 LARISEIELRYKCS-KQEVERAVVASEGDLDKAEDTIKVQKQEL 266 (632)
Q Consensus 224 La~L~eMevsyGFs-~~qAeKALkeTdGDVERAVEWLFSHpDD~ 266 (632)
|.+|.|+= |+. .+....||++++|||+.||..|-+.+...
T Consensus 22 LNQLrEIT---GIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~~~ 62 (129)
T 2lva_A 22 LNQLREIT---GIQDPSFLHEALKASNGDITQAVSLLTDERVKE 62 (129)
Confidence 78888884 877 78889999999999999999998887765
No 102
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=85.60 E-value=0.077 Score=62.92 Aligned_cols=36 Identities=14% Similarity=0.327 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhc
Q 006751 224 LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQ 262 (632)
Q Consensus 224 La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSH 262 (632)
|..|.++ -|...-.++|||.+|+||+|+|+|||+..
T Consensus 9 VKeLRe~---TGagmmdCKKAL~e~~GD~ekAie~LRkk 44 (1289)
T 3avx_A 9 VKELRER---TGAGMMDCKKALTEANGDIELAIENMRKS 44 (1289)
T ss_dssp THHHHTT---TCCCTTTTTTTTTTTTTCHHHHHHHHHTT
T ss_pred HHHHHHH---hCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4555555 48888899999999999999999999853
No 103
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=85.34 E-value=0.36 Score=38.60 Aligned_cols=29 Identities=24% Similarity=0.157 Sum_probs=25.1
Q ss_pred hcCCCHHHHH--HHHHHccCCHHHHHHHHhh
Q 006751 233 RYKCSKQEVE--RAVVASEGDLDKAEDTIKV 261 (632)
Q Consensus 233 syGFs~~qAe--KALkeTdGDVERAVEWLFS 261 (632)
.|||+-+-.- +.|+..+|||.+|+|.|..
T Consensus 19 ~MGF~negGWLt~LL~~k~gDI~~aLD~lq~ 49 (52)
T 1q02_A 19 SMGFSDEGGWLTRLLQTKNYDIGAALDTIQY 49 (52)
T ss_dssp TTTCCCTTSHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HcCCCccccHHHHHHHHccCCHHHHHHHhhh
Confidence 5599988774 9999999999999998853
No 104
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=85.24 E-value=1.2 Score=34.83 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=35.5
Q ss_pred hHHHHHHHHhc--CCCHHHHHHHHHHhCCCHHHHHHHhhhcCCc
Q 006751 160 LEALSQQLVAM--GFSSERATLALMLNEGRVEESVNWLFEVSEE 201 (632)
Q Consensus 160 lE~LVqQLvAM--GFpe~RCkKALiatNgDVEAAMnWLFEHMED 201 (632)
.++-+++|.+| .-.....+.+|-.+|||+|+||+=|++.-+|
T Consensus 4 ~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~~ 47 (49)
T 1otr_A 4 HESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKENDD 47 (49)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcccc
Confidence 46788999999 4557889999999999999999999987554
No 105
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=83.49 E-value=2 Score=36.09 Aligned_cols=42 Identities=5% Similarity=0.073 Sum_probs=34.5
Q ss_pred CchHHHHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhc
Q 006751 219 DISEELARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQ 262 (632)
Q Consensus 219 DIseELa~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSH 262 (632)
++...|.+|.|+.= -+....++++|+.+++|+|+++..|++.
T Consensus 12 ~l~s~I~qV~DLfP--dLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 12 ELDSLISQVKDLLP--DLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHHHHCC--SSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcc--cCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 34444899988831 2568999999999999999999999984
No 106
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=80.01 E-value=1.7 Score=37.54 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHccCCHHHHHHHHhhcCC
Q 006751 224 LARISEIELRYK--CSKQEVERAVVASEGDLDKAEDTIKVQKQ 264 (632)
Q Consensus 224 La~L~eMevsyG--Fs~~qAeKALkeTdGDVERAVEWLFSHpD 264 (632)
|++|.+. +| ++..+..+|+.+++=|++||+|.|++...
T Consensus 38 Ld~iR~V---lGdsV~e~~Lv~ailk~dfD~ekALd~vL~~~~ 77 (83)
T 1ufz_A 38 LDHMREV---LGDAVPDDILTEAILKHKFDVQKALSVVLEQDG 77 (83)
T ss_dssp HHHHHHH---TTTTSCHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHH---HcccCCHHHHHHHHHHhcCCHHHHHHHHHhccc
Confidence 4555555 47 99999999999999999999999998754
No 107
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=77.54 E-value=0.46 Score=45.98 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhh
Q 006751 224 LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKV 261 (632)
Q Consensus 224 La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFS 261 (632)
|.+|.+| ||.+.+|.+||..++.|+++|+|-|++
T Consensus 181 v~~~~~m----gf~~~~~~~al~~~~~~~~~~~~~l~~ 214 (216)
T 2pwq_A 181 IKKITEM----GFSEDQAKNALIKANWNETLALNTLLE 214 (216)
T ss_dssp --------------------------------------
T ss_pred HHHHHHc----CCCHHHHHHHHHHcCCchHHHHHHHhc
Confidence 7788888 999999999999999999999999885
No 108
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=75.31 E-value=4.4 Score=33.99 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=33.2
Q ss_pred hhHHHHHHHHhc--CCCHHHHHHHHHHhCCCHHHHHHHhhhc
Q 006751 159 KLEALSQQLVAM--GFSSERATLALMLNEGRVEESVNWLFEV 198 (632)
Q Consensus 159 KlE~LVqQLvAM--GFpe~RCkKALiatNgDVEAAMnWLFEH 198 (632)
.+++.|+|+..+ -+.+....+.|..+|+|+|..++-|||.
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 456788888877 4556778888888899999999999995
No 109
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=73.37 E-value=4.2 Score=31.27 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHccCCHHHHHHHHh
Q 006751 224 LARISEIELRYKCSK-QEVERAVVASEGDLDKAEDTIK 260 (632)
Q Consensus 224 La~L~eMevsyGFs~-~qAeKALkeTdGDVERAVEWLF 260 (632)
|++.+++= |++. ++|+.-|.++++||+.||.-.|
T Consensus 9 ia~F~~iT---G~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 9 LADFQACT---GIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp HHHHHHHH---CCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred HHHHHHHH---CCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 88888885 9996 9999999999999999986433
No 110
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.35 E-value=7.4 Score=30.91 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHh-cCCCHHHHHHHHHHhCCCHHHHHHHhhhcCC
Q 006751 158 RKLEALSQQLVA-MGFSSERATLALMLNEGRVEESVNWLFEVSE 200 (632)
Q Consensus 158 RKlE~LVqQLvA-MGFpe~RCkKALiatNgDVEAAMnWLFEHME 200 (632)
+.-+++|+|+++ .|-.+..|+.-|-+++.|+|.||+=.|++.+
T Consensus 13 ~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~ 56 (62)
T 2dal_A 13 SALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGG 56 (62)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 344566777766 5888999999999999999999999998764
No 111
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=70.29 E-value=2.3 Score=42.43 Aligned_cols=103 Identities=15% Similarity=0.113 Sum_probs=66.6
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHH---HHH-hCCCHHHHHHHhhhcC-CcccCCCCCcccCCCC-CCCCchHHHHHHHHHH
Q 006751 158 RKLEALSQQLVAMGFSSERATLA---LML-NEGRVEESVNWLFEVS-EEEARNTDPKLESSGS-LKIDISEELARISEIE 231 (632)
Q Consensus 158 RKlE~LVqQLvAMGFpe~RCkKA---Lia-tNgDVEAAMnWLFEHM-EDpDiD~P~~l~s~~~-~~iDIseELa~L~eMe 231 (632)
.+.++.|+-|..+||+...+.++ |+. .-.++++-++||-+++ .++|+.. .+..-.. ...+ .+.|.-..+.+
T Consensus 17 ~~~~~~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~--iv~~~P~lL~~~-~~~l~p~l~fL 93 (343)
T 3mva_O 17 LKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIAS--IISRYPRAITRT-PENLSKRWDLW 93 (343)
T ss_dssp ---CCHHHHHHHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHH--HHHHCGGGGGCC-HHHHHHHHHHH
T ss_pred cccHHHHHHHHHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHH--HHHhCcHHHhCC-HHHHHHHHHHH
Confidence 45678999999999998888765 222 3568999999998776 3344432 0100000 1112 22355555778
Q ss_pred HhcCCCHHHHHHHHHHcc---------CCHHHHHHHHhhcC
Q 006751 232 LRYKCSKQEVERAVVASE---------GDLDKAEDTIKVQK 263 (632)
Q Consensus 232 vsyGFs~~qAeKALkeTd---------GDVERAVEWLFSHp 263 (632)
.++|++.+++.++|..+- +++...+++|.+.-
T Consensus 94 ~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lG 134 (343)
T 3mva_O 94 RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVG 134 (343)
T ss_dssp TTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhC
Confidence 899999999999976543 26888889998643
No 112
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.19 E-value=7.9 Score=31.39 Aligned_cols=39 Identities=18% Similarity=0.099 Sum_probs=30.8
Q ss_pred HHHHHHHh-cC-CCHHHHHHHHHHhCCCHHHHHHHhhhcCC
Q 006751 162 ALSQQLVA-MG-FSSERATLALMLNEGRVEESVNWLFEVSE 200 (632)
Q Consensus 162 ~LVqQLvA-MG-Fpe~RCkKALiatNgDVEAAMnWLFEHME 200 (632)
++|+|+++ -| =....|+.-|-.+|.|+|.||+=.|++.+
T Consensus 20 e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~ 60 (67)
T 2dam_A 20 EKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQE 60 (67)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 34555555 36 56778999999999999999999999855
No 113
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=69.09 E-value=2.9 Score=40.44 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=24.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhCCC
Q 006751 160 LEALSQQLVAMGFSSERATLALMLNEGR 187 (632)
Q Consensus 160 lE~LVqQLvAMGFpe~RCkKALiatNgD 187 (632)
++++|++|++|||++..+..||-..+.|
T Consensus 169 ~~~~v~~~~~mg~~~~~~~~al~~~~~~ 196 (215)
T 1tte_A 169 DHDLIDEFESQGFEKDKIVEVLRRLGVK 196 (215)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHHSCCS
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 4789999999999999999999776654
No 114
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=67.74 E-value=11 Score=32.34 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHccCCHHHHHHHHhhcCCCCCCCCCCCCCcc
Q 006751 224 LARISEIELRYKC-SKQEVERAVVASEGDLDKAEDTIKVQKQELPATPPRPDDTA 277 (632)
Q Consensus 224 La~L~eMevsyGF-s~~qAeKALkeTdGDVERAVEWLFSHpDD~~s~~~kpe~~~ 277 (632)
|.+|.|+- |+ +.+....||++.+|||..||-.|-..+... |+..|.+|
T Consensus 28 LnQLrEIT---GiqD~~~L~~ALkas~Gdl~~AV~~LT~~~~~~---P~q~~~~~ 76 (80)
T 1vdl_A 28 LNQLREIT---GINDAQILQQALKDSNGNLELAVAFLTAKNAKT---PPQEETSG 76 (80)
T ss_dssp HHHHHHHS---CCCCHHHHHHHHHHHTSCHHHHHHHHHTTSCCC---CSCSSCCC
T ss_pred HHHHHHHh---CCCcHHHHHHHHHhccCCHHHHHHHHhcccccC---CCCccccC
Confidence 88888884 86 456678999999999999999998776653 44444443
No 115
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=66.42 E-value=13 Score=27.06 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=32.2
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHHhCCCHHHHHHHhhhcC
Q 006751 161 EALSQQLVA-MGFSSERATLALMLNEGRVEESVNWLFEVS 199 (632)
Q Consensus 161 E~LVqQLvA-MGFpe~RCkKALiatNgDVEAAMnWLFEHM 199 (632)
+++|+|.++ -|..+..|+.-|-.++.|+|.|++=.|++.
T Consensus 6 ~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 6 QDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 346666665 588999999999999999999999888764
No 116
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=65.57 E-value=24 Score=36.06 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=53.9
Q ss_pred HHHHHH--HHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHh----CCCHHHHHHHhhhcC-CcccCCCCCcccCCCCCCCC
Q 006751 147 LHERCC--GYLMSRKLEALSQQLVAMGFSSERATLALMLN----EGRVEESVNWLFEVS-EEEARNTDPKLESSGSLKID 219 (632)
Q Consensus 147 lhERC~--~yLmsRKlE~LVqQLvAMGFpe~RCkKALiat----NgDVEAAMnWLFEHM-EDpDiD~P~~l~s~~~~~iD 219 (632)
|.++|- .++-+-++|..|..|+.|||+..+..++|..+ .-+++.=+++|..=+ ...++-. .+ .....-..
T Consensus 31 l~~~~~~~~~~~~~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~~l~~~i~~L~~LGls~e~V~k--iL-~k~P~lL~ 107 (335)
T 4fp9_B 31 LLEKQGTPVVQGSLELERVMSSLLDMGFSNAHINELLSVRRGASLQQLLDIISEFILLGLNPEPVCV--VL-KKSPQLLK 107 (335)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHHHHHHHHHHHHHTTCCHHHHHH--HH-HHCGGGGG
T ss_pred HHHcCCCccccccccHHHHHHHHHHCCCCHHHHHHHHHhCcccchhHHHHHHHHHHHcCCCHHHHHH--HH-HhChhhcc
Confidence 444443 45566678889999999999999999999885 334555566664432 1111111 01 00000011
Q ss_pred chHH-HHHHHHHHHhcCCCHHHHHHHHHHc
Q 006751 220 ISEE-LARISEIELRYKCSKQEVERAVVAS 248 (632)
Q Consensus 220 IseE-La~L~eMevsyGFs~~qAeKALkeT 248 (632)
.+.| |..-.+.+.++||+..++++.|..+
T Consensus 108 ~s~e~L~~~l~fL~~lGl~~~~i~~ll~~~ 137 (335)
T 4fp9_B 108 LPIMQMRKRSSYLQKLGLGEGKLKRVLYCC 137 (335)
T ss_dssp SCHHHHHHHHHHHHHTTCTTTTHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 2223 4443355566677777777777665
No 117
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=60.09 E-value=1.2 Score=53.11 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=31.1
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHHhhhcC
Q 006751 163 LSQQLVAM-GFSSERATLALMLNEGRVEESVNWLFEVS 199 (632)
Q Consensus 163 LVqQLvAM-GFpe~RCkKALiatNgDVEAAMnWLFEHM 199 (632)
+|.+|..+ |-+.-.|||||..+|||+|+|++||-+.+
T Consensus 8 ~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LRkkG 45 (1289)
T 3avx_A 8 LVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSG 45 (1289)
T ss_dssp CTHHHHTTTCCCTTTTTTTTTTTTTCHHHHHHHHHTTH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 45666553 77888899999999999999999998765
No 118
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=59.88 E-value=14 Score=29.56 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHH
Q 006751 160 LEALSQQLVAMGFSSERATLALML 183 (632)
Q Consensus 160 lE~LVqQLvAMGFpe~RCkKALia 183 (632)
.+++++-|+++||....+.+|+-.
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~ 40 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLD 40 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467999999999999999999865
No 119
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=59.75 E-value=11 Score=33.07 Aligned_cols=28 Identities=36% Similarity=0.331 Sum_probs=25.4
Q ss_pred HhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 006751 168 VAMGFSSERATLALMLNEGRVEESVNWL 195 (632)
Q Consensus 168 vAMGFpe~RCkKALiatNgDVEAAMnWL 195 (632)
...|-++..|++||..+|||+=.|+-+|
T Consensus 74 ~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 74 NQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 4479999999999999999999998876
No 120
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=56.97 E-value=19 Score=28.70 Aligned_cols=38 Identities=3% Similarity=0.039 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhh
Q 006751 224 LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKV 261 (632)
Q Consensus 224 La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFS 261 (632)
..+|..+-..=|...+-++++|.+++.|+++|+.-...
T Consensus 8 ~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 45 (59)
T 1oai_A 8 QEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH 45 (59)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55566666667999999999999999999999986533
No 121
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=56.52 E-value=11 Score=37.73 Aligned_cols=39 Identities=8% Similarity=0.175 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCC
Q 006751 224 LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQE 265 (632)
Q Consensus 224 La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD 265 (632)
|.+.+.+= |++..+|++.|.+++.|+|.|++-.|++|+.
T Consensus 19 i~qF~~iT---g~~~~~A~~~L~~~~WdLe~Al~~ff~~~~~ 57 (270)
T 3bq3_A 19 IESFTSLT---KCDPKVSRKYLQRNHWNINYALNDYYDKEIG 57 (270)
T ss_dssp HHHHHHHH---CCCHHHHHHHHHTTTTCHHHHHHHHHHHHCC
T ss_pred HHHHHHHc---CCCHHHHHHHHHHcCCCHHHHHHHHHhCccc
Confidence 66766664 9999999999999999999999999998765
No 122
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=54.46 E-value=5.9 Score=31.72 Aligned_cols=37 Identities=11% Similarity=0.294 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHccCCHHHHHHHHhh
Q 006751 222 EELARISEIELRYK-CSKQEVERAVVASEGDLDKAEDTIKV 261 (632)
Q Consensus 222 eELa~L~eMevsyG-Fs~~qAeKALkeTdGDVERAVEWLFS 261 (632)
+++..|.+| |- ++.+.++..|.+++|+++.|||-|.+
T Consensus 14 ~~~~~L~~M---FP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 14 DTLNTLQNM---FPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHH---STTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHH---cccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 348889999 23 67999999999999999999998854
No 123
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.20 E-value=22 Score=28.83 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=35.1
Q ss_pred Hhhh-hhHHHHHHHHh-cCCCHHHHHHHHHHhCCCHHHHHHHhhhcC
Q 006751 155 LMSR-KLEALSQQLVA-MGFSSERATLALMLNEGRVEESVNWLFEVS 199 (632)
Q Consensus 155 LmsR-KlE~LVqQLvA-MGFpe~RCkKALiatNgDVEAAMnWLFEHM 199 (632)
.|.. ..+++|.|.++ -|=.+..|+.-|-.++.|+|.|++=.|+..
T Consensus 11 ~m~~~~~q~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~ 57 (66)
T 2dzl_A 11 NMDELRHQVMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQET 57 (66)
T ss_dssp CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCS
T ss_pred HhhcCccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 3444 44356777665 488999999999889999999999999764
No 124
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=54.08 E-value=12 Score=28.80 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=29.3
Q ss_pred HHHHHHHHhc-CCCH-HHHHHHHHHhCCCHHHHHHHh
Q 006751 161 EALSQQLVAM-GFSS-ERATLALMLNEGRVEESVNWL 195 (632)
Q Consensus 161 E~LVqQLvAM-GFpe-~RCkKALiatNgDVEAAMnWL 195 (632)
+++|+|++++ |... .+|+-=|-++|-|+|+|++=.
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f 42 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAINGV 42 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 5778888776 8886 999999999999999998643
No 125
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=51.11 E-value=32 Score=27.43 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhc
Q 006751 224 LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQ 262 (632)
Q Consensus 224 La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSH 262 (632)
..+|..|-..=|...+-++++|.+++.|+++|+.-...-
T Consensus 7 ~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 7 LELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 455666666679999999999999999999999876553
No 126
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=50.11 E-value=26 Score=27.98 Aligned_cols=22 Identities=5% Similarity=-0.080 Sum_probs=17.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHc
Q 006751 227 ISEIELRYKCSKQEVERAVVAS 248 (632)
Q Consensus 227 L~eMevsyGFs~~qAeKALkeT 248 (632)
..+-++.+||+..+|++||+..
T Consensus 20 a~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 20 AVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH
Confidence 3344566699999999999876
No 127
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=49.96 E-value=3.8 Score=36.56 Aligned_cols=87 Identities=13% Similarity=0.083 Sum_probs=59.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHH-hCCCHHHHHHHhhhcCCcccCCCCCcccCCCCCCCCchHHHHHHHHHHHhcCCCHHH
Q 006751 162 ALSQQLVAMGFSSERATLALML-NEGRVEESVNWLFEVSEEEARNTDPKLESSGSLKIDISEELARISEIELRYKCSKQE 240 (632)
Q Consensus 162 ~LVqQLvAMGFpe~RCkKALia-tNgDVEAAMnWLFEHMEDpDiD~P~~l~s~~~~~iDIseELa~L~eMevsyGFs~~q 240 (632)
.|++=|.+.||++.-..+.|.. +..|.-.-++|||.+. ||.. .+ . +..+.+||-.+ +..+|++-..
T Consensus 22 ~i~~fL~~~~~~~~is~k~L~~Pt~kdF~~if~fL~~~i-dp~~----~~-~----~~~~eeev~~~---lK~L~YP~~i 88 (120)
T 2igp_A 22 QLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFL-CPSY----EL-P----DTKFEEEVPRI---FKDLGYPFAL 88 (120)
T ss_dssp HHHHHHHHTTCSSCCCTTTTSSCCHHHHHHHHHHHHTTT-CTTC----CC-C----CTTHHHHHHHH---HHHTTCCSCC
T ss_pred HHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHHHHhc-CCCC----cc-C----CCChHHHHHHH---HHHcCCCcee
Confidence 6677788899987655666655 5779999999999998 4433 12 1 12355664444 2334888777
Q ss_pred HHHHHHHccC--C---HHHHHHHHhh
Q 006751 241 VERAVVASEG--D---LDKAEDTIKV 261 (632)
Q Consensus 241 AeKALkeTdG--D---VERAVEWLFS 261 (632)
-+-+|.+-++ . +=.|+.||-.
T Consensus 89 sKS~L~a~g~pHsWp~~L~~L~WLve 114 (120)
T 2igp_A 89 SKSSMYTVGAPHTWPHIVAALVWLID 114 (120)
T ss_dssp CHHHHHTTTSTTTHHHHHHHHHHHHH
T ss_pred CHHHhcCCCCCccHHHHHHHHHHHHH
Confidence 7888887777 2 7788888854
No 128
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=49.56 E-value=50 Score=29.17 Aligned_cols=99 Identities=15% Similarity=0.107 Sum_probs=61.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHh-CCCHHHHHHHhhhcCCcccCCCCC---cc---cCCCCCCCCchHHHHHHHHHHHhc
Q 006751 162 ALSQQLVAMGFSSERATLALMLN-EGRVEESVNWLFEVSEEEARNTDP---KL---ESSGSLKIDISEELARISEIELRY 234 (632)
Q Consensus 162 ~LVqQLvAMGFpe~RCkKALiat-NgDVEAAMnWLFEHMEDpDiD~P~---~l---~s~~~~~iDIseELa~L~eMevsy 234 (632)
....+....|.+......|.+.. .+|.+.|+.|+-.-.+- ..+. .+ --.++...|..+-+..+ ......
T Consensus 7 ~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---g~~~a~~~lg~~y~~~g~~~~~~~A~~~~-~~A~~~ 82 (212)
T 3rjv_A 7 SQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ---GDGDALALLAQLKIRNPQQADYPQARQLA-EKAVEA 82 (212)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCHHHHHHHHHHTTSSTTSCCHHHHHHHH-HHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCCCHHHHHHHH-HHHHHC
Confidence 44566667799998888888874 88999999998655431 1110 11 01111112333324444 233456
Q ss_pred CCCHHHHHHHHHHc-----cCCHHHHHHHHhhcCC
Q 006751 235 KCSKQEVERAVVAS-----EGDLDKAEDTIKVQKQ 264 (632)
Q Consensus 235 GFs~~qAeKALkeT-----dGDVERAVEWLFSHpD 264 (632)
|........++.-. .+|+++|++|+..--+
T Consensus 83 g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 88888888887765 6799999999976443
No 129
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=48.39 E-value=30 Score=35.39 Aligned_cols=107 Identities=9% Similarity=0.102 Sum_probs=70.9
Q ss_pred hhhhhHHHHHHHHhcCCCHHHHHHHHHHh----CCC---HHHHHHHhhhcCCcc--cCCCCCcccCCCCCCCCchHH-H-
Q 006751 156 MSRKLEALSQQLVAMGFSSERATLALMLN----EGR---VEESVNWLFEVSEEE--ARNTDPKLESSGSLKIDISEE-L- 224 (632)
Q Consensus 156 msRKlE~LVqQLvAMGFpe~RCkKALiat----NgD---VEAAMnWLFEHMEDp--DiD~P~~l~s~~~~~iDIseE-L- 224 (632)
..+.++.+|.-|...||+.....++|..+ .-+ +...+.||-+ +.=. ++-. .+ ..-..-...+.| |
T Consensus 74 l~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~-lGl~~~~i~~--ll-~~~P~lL~~s~e~i~ 149 (335)
T 4fp9_B 74 SLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQK-LGLGEGKLKR--VL-YCCPEIFTMRQQDIN 149 (335)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHH-TTCTTTTHHH--HH-HHCGGGGTSCHHHHH
T ss_pred chhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHH-cCCCHHHHHH--HH-HhCchhhccChHHHH
Confidence 34567889999999999999999999874 444 4557778755 3211 1100 00 000011123445 3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHc-------cCCHHHHHHHHhhcCCCC
Q 006751 225 ARISEIELRYKCSKQEVERAVVAS-------EGDLDKAEDTIKVQKQEL 266 (632)
Q Consensus 225 a~L~eMevsyGFs~~qAeKALkeT-------dGDVERAVEWLFSHpDD~ 266 (632)
..+..+..++||+.+++.++|..| ...|+.-++||...+.=.
T Consensus 150 ~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~ 198 (335)
T 4fp9_B 150 DTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIK 198 (335)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCC
Confidence 344445568999999999999876 568999999999988753
No 130
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=47.33 E-value=31 Score=31.15 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhh
Q 006751 224 LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKV 261 (632)
Q Consensus 224 La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFS 261 (632)
|..|..|...|..+--.|-+||-++.||+++|-.+|.+
T Consensus 14 ~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~ 51 (111)
T 3k6g_A 14 IKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLAS 51 (111)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhC
Confidence 67777777889999999999999999999999999987
No 131
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=44.71 E-value=16 Score=29.23 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=26.7
Q ss_pred hhHHHHHHHHhc--CCCHHHHHHHHHHhCCCHHHHHHHhhhc
Q 006751 159 KLEALSQQLVAM--GFSSERATLALMLNEGRVEESVNWLFEV 198 (632)
Q Consensus 159 KlE~LVqQLvAM--GFpe~RCkKALiatNgDVEAAMnWLFEH 198 (632)
.-++.+++|.+| .+..+.-+-.|.+++|++++|++-|++=
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 345778999999 4456777888888999999999998763
No 132
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=44.06 E-value=19 Score=34.72 Aligned_cols=29 Identities=7% Similarity=0.079 Sum_probs=25.3
Q ss_pred chHH-HHHHHHHHHhcCCCHHHHHHHHHHccCCH
Q 006751 220 ISEE-LARISEIELRYKCSKQEVERAVVASEGDL 252 (632)
Q Consensus 220 IseE-La~L~eMevsyGFs~~qAeKALkeTdGDV 252 (632)
+..+ |.+|.+| ||+.+.|+.||..+++|-
T Consensus 168 ~~~~~v~~~~~m----g~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 168 IDHDLIDEFESQ----GFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp CSHHHHHHHHHH----TCCHHHHHHHHHHSCCSS
T ss_pred ccHHHHHHHHHc----CCCHHHHHHHHHHcCCCc
Confidence 4556 8888888 999999999999999985
No 133
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=41.29 E-value=44 Score=26.77 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=35.6
Q ss_pred CCchHH-HHHHHHHHHhcCCCHHHHHHHHHHccCCHHHHHHHHhhcCCC
Q 006751 218 IDISEE-LARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQE 265 (632)
Q Consensus 218 iDIseE-La~L~eMevsyGFs~~qAeKALkeTdGDVERAVEWLFSHpDD 265 (632)
..+.+| |.+....+ -|-+.+...|-|.-|+=|+..||.-|.++-|+
T Consensus 6 ~~vPe~li~q~q~VL--qgksR~vIirELqrTnLdVN~AvNNlLsRDd~ 52 (53)
T 2qho_B 6 SVIPEELISQAQVVL--QGKSRSVIIRELQRTNLDVNLAVNNLLSRDDE 52 (53)
T ss_dssp GGSCHHHHHHHHHHS--TTCCHHHHHHHHHHTTTCHHHHHHHHHC----
T ss_pred ccCcHHHHHHHHHHh--cCCcHHHHHHHHHHhCccHHHHHHHHhccccC
Confidence 356677 77765543 58999999999999999999999999998765
No 134
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=40.43 E-value=15 Score=28.35 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHccCCHHHHHHHH
Q 006751 236 CSKQEVERAVVASEGDLDKAEDTI 259 (632)
Q Consensus 236 Fs~~qAeKALkeTdGDVERAVEWL 259 (632)
|..+.+++||..|+||+.+|++.|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 346779999999999999999866
No 135
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=39.23 E-value=15 Score=30.76 Aligned_cols=22 Identities=5% Similarity=0.214 Sum_probs=19.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHH
Q 006751 238 KQEVERAVVASEGDLDKAEDTI 259 (632)
Q Consensus 238 ~~qAeKALkeTdGDVERAVEWL 259 (632)
.+.+++||..|+||+.+|++.|
T Consensus 43 r~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 43 WEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHh
Confidence 4567899999999999999977
No 136
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.07 E-value=98 Score=27.88 Aligned_cols=73 Identities=15% Similarity=0.026 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHh-CCCHHHHHHHhhhcCCcccCCCCCcccCCCCCCCCchHHHHHHHHHHHhcCCCHHH
Q 006751 162 ALSQQLVAMGFSSERATLALMLN-EGRVEESVNWLFEVSEEEARNTDPKLESSGSLKIDISEELARISEIELRYKCSKQE 240 (632)
Q Consensus 162 ~LVqQLvAMGFpe~RCkKALiat-NgDVEAAMnWLFEHMEDpDiD~P~~l~s~~~~~iDIseELa~L~eMevsyGFs~~q 240 (632)
.|.+.|..-|++......||-.. ....|.|...+-..... . ...+ ..+-..+..++.+=||+.+.
T Consensus 84 ~I~~eL~~KGI~~~~i~~al~~~~~d~~~~a~~l~~kk~~~---~----------~~~~-~~~~~K~~~~L~rrGF~~~~ 149 (159)
T 3c1d_A 84 RIRQELNQKGISREATEKAMREADIDWAALARDQATRKYGE---P----------LPTV-FSEKVKIQRFLLYRGYLMED 149 (159)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCS---S----------CCCS-HHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCHhHHHHHHHHHHHHcCC---C----------CCCC-HHHHHHHHHHHHHCCCCHHH
Confidence 56777777777777777777554 22244455544322210 0 0111 23467788899999999999
Q ss_pred HHHHHHHc
Q 006751 241 VERAVVAS 248 (632)
Q Consensus 241 AeKALkeT 248 (632)
++++|.+.
T Consensus 150 i~~~l~~~ 157 (159)
T 3c1d_A 150 IQDIWRNF 157 (159)
T ss_dssp HTTCC---
T ss_pred HHHHHHhc
Confidence 99988754
No 137
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=38.08 E-value=48 Score=28.40 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCHHHH
Q 006751 141 EKRAQELHERCCGYLMSRKLEALSQQLVAMGFSSERA 177 (632)
Q Consensus 141 ErraqElhERC~~yLmsRKlE~LVqQLvAMGFpe~RC 177 (632)
|||+.|..++--.....+|++.+.++|..=||+-+--
T Consensus 42 ERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~~eeL 78 (86)
T 3nr7_A 42 ERREEESAAAAEVEERTRKLQQYREMLIADGIDPNEL 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 4445544445555556789999999999999987653
No 138
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Probab=36.16 E-value=37 Score=30.23 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=29.8
Q ss_pred CchHH-H-HHHHHHHHhcCCCHHHHHHHHHHcc---CC------HHHHHHHHhhcC
Q 006751 219 DISEE-L-ARISEIELRYKCSKQEVERAVVASE---GD------LDKAEDTIKVQK 263 (632)
Q Consensus 219 DIseE-L-a~L~eMevsyGFs~~qAeKALkeTd---GD------VERAVEWLFSHp 263 (632)
.+++| | +.|..|...||.+.++++..+...+ .+ .++|++||..+-
T Consensus 108 ~vsdeev~~~i~~~A~~y~~~~~~~~~~~~~~~~~~~~i~~~i~~~K~~d~l~~~a 163 (170)
T 2nsa_A 108 SVNDEELEKEAEELAPFWGISPDRAKSLVKARQDLREELRWAILKRKVLDLLLQEV 163 (170)
T ss_dssp CCCHHHHHHHHHHHHHHHTSCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444 3 3355566678999999998875322 12 459999998754
No 139
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=35.00 E-value=1.6e+02 Score=25.83 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=55.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHhCC----CHHHHHHHhhhcCCcccCCCCC---cc----cCCCCCCCCchHHHHHHHHHHH
Q 006751 164 SQQLVAMGFSSERATLALMLNEG----RVEESVNWLFEVSEEEARNTDP---KL----ESSGSLKIDISEELARISEIEL 232 (632)
Q Consensus 164 VqQLvAMGFpe~RCkKALiatNg----DVEAAMnWLFEHMEDpDiD~P~---~l----~s~~~~~iDIseELa~L~eMev 232 (632)
..+....|++......|.+..++ |.+.|+.|+..-.+- ..+. .+ ..+.....|...-+..+ ....
T Consensus 41 ~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~-~~A~ 116 (212)
T 3rjv_A 41 AQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEA---GSKSGEIVLARVLVNRQAGATDVAHAITLL-QDAA 116 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHH-HHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCccCHHHHHHHH-HHHH
Confidence 34445679999999999887656 899999999765321 1110 11 00001122333334444 3334
Q ss_pred hcCC----CHHHHHHHHHHcc-----CCHHHHHHHHhhc
Q 006751 233 RYKC----SKQEVERAVVASE-----GDLDKAEDTIKVQ 262 (632)
Q Consensus 233 syGF----s~~qAeKALkeTd-----GDVERAVEWLFSH 262 (632)
..|. .......++.-.. +|.++|++|+..-
T Consensus 117 ~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 117 RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 5566 4555555665554 5899999998764
No 140
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=33.38 E-value=68 Score=29.01 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=28.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcC
Q 006751 164 SQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVS 199 (632)
Q Consensus 164 VqQLvAMGFpe~RCkKALiatNgDVEAAMnWLFEHM 199 (632)
...+....-.-.-.++||+.|.|++++|-.+|....
T Consensus 18 ~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~~ 53 (111)
T 3k6g_A 18 RQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASGQ 53 (111)
T ss_dssp HHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHSS
T ss_pred HHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCCC
Confidence 333444555666789999999999999999998854
No 141
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=32.90 E-value=90 Score=32.64 Aligned_cols=50 Identities=16% Similarity=0.103 Sum_probs=33.9
Q ss_pred CCchHH--HHHHHHHHHhcCCCHHHHHHHHHHccCC---------HHHHHHHHhhcCCCCC
Q 006751 218 IDISEE--LARISEIELRYKCSKQEVERAVVASEGD---------LDKAEDTIKVQKQELP 267 (632)
Q Consensus 218 iDIseE--La~L~eMevsyGFs~~qAeKALkeTdGD---------VERAVEWLFSHpDD~~ 267 (632)
+.+++| -+.|..|...||.+.+++++.+...++- -++|++||..+-.--.
T Consensus 349 I~vt~eev~~~i~~~A~~yg~~~~~~~~~~~~~~~~~~~l~~~i~~~Kv~d~l~e~akv~e 409 (433)
T 3gty_X 349 ISVNDEELEKEAEELAPFWGISPDRAKSLVKARQDLREELRWAILKRKVLDLLLQEVKVKV 409 (433)
T ss_dssp CCCCHHHHHHHHTTSTTTTTSCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCEEEe
Confidence 345555 3445566667999999999888764431 2578999998865433
No 142
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=32.79 E-value=17 Score=34.75 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHH
Q 006751 161 EALSQQLVAMGFSSERATLALML 183 (632)
Q Consensus 161 E~LVqQLvAMGFpe~RCkKALia 183 (632)
+..++-|.++||+...-.+.|..
T Consensus 42 ~~~l~fL~~lG~~~~~i~~il~~ 64 (270)
T 3m66_A 42 KQMLLFLKDVGIEDNQLGAFLTK 64 (270)
T ss_dssp HHHHHHHHHHTCCGGGHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHh
Confidence 34555555555555554444433
No 143
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=32.69 E-value=74 Score=25.53 Aligned_cols=33 Identities=24% Similarity=0.125 Sum_probs=27.0
Q ss_pred HhcCCCHHHHHHHHHHhCCCHHHHHHHhhhcCC
Q 006751 168 VAMGFSSERATLALMLNEGRVEESVNWLFEVSE 200 (632)
Q Consensus 168 vAMGFpe~RCkKALiatNgDVEAAMnWLFEHME 200 (632)
+--|=+++...+-|..||=||..|+|=|+..-|
T Consensus 19 VLqgksR~vIirELqrTnLdVN~AvNNlLsRDd 51 (53)
T 2qho_B 19 VLQGKSRSVIIRELQRTNLDVNLAVNNLLSRDD 51 (53)
T ss_dssp HSTTCCHHHHHHHHHHTTTCHHHHHHHHHC---
T ss_pred HhcCCcHHHHHHHHHHhCccHHHHHHHHhcccc
Confidence 446888899999999999999999999998744
No 144
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=31.36 E-value=24 Score=34.55 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=24.1
Q ss_pred HHHHHHHHHHh--CCCHHHHHHHh---hhcCCccc
Q 006751 174 SERATLALMLN--EGRVEESVNWL---FEVSEEEA 203 (632)
Q Consensus 174 e~RCkKALiat--NgDVEAAMnWL---FEHMEDpD 203 (632)
+.-..-|||+. ++|+++|+-|| ++.+|||.
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHH
Confidence 34455689996 99999999998 78888864
No 145
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.65 E-value=40 Score=33.31 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=26.8
Q ss_pred cCCCHHHHHHHHHHh--CCCHHHHHHHh---hhcCCccc
Q 006751 170 MGFSSERATLALMLN--EGRVEESVNWL---FEVSEEEA 203 (632)
Q Consensus 170 MGFpe~RCkKALiat--NgDVEAAMnWL---FEHMEDpD 203 (632)
=|..+.-..-|||+. ++|+++|+-|| ++.+|||.
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~ 69 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPN 69 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHH
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHH
Confidence 466777788899996 99999999998 78888864
No 146
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=29.03 E-value=75 Score=26.53 Aligned_cols=26 Identities=8% Similarity=-0.114 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHc-----cCCHHHHHHHHh
Q 006751 235 KCSKQEVERAVVAS-----EGDLDKAEDTIK 260 (632)
Q Consensus 235 GFs~~qAeKALkeT-----dGDVERAVEWLF 260 (632)
|....+...++.-. .+|+++|++|+.
T Consensus 91 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 121 (138)
T 1klx_A 91 NDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121 (138)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 55444444444332 589999999985
No 147
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=28.56 E-value=1.9e+02 Score=28.68 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHc-------cCCHHHHHHHHhh
Q 006751 224 LARISEIELRYKCSKQEVERAVVAS-------EGDLDKAEDTIKV 261 (632)
Q Consensus 224 La~L~eMevsyGFs~~qAeKALkeT-------dGDVERAVEWLFS 261 (632)
+.-+.+.+.++||+.+++.++++.+ ...++.-+|+|.+
T Consensus 240 ~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~ 284 (343)
T 3mva_O 240 YANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME 284 (343)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHH
Confidence 5555555557788888888877733 3347777777776
No 148
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=27.69 E-value=61 Score=31.00 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHH
Q 006751 159 KLEALSQQLVAMGFSSERATLALML 183 (632)
Q Consensus 159 KlE~LVqQLvAMGFpe~RCkKALia 183 (632)
..+++++.|+++||....+.+|+-.
T Consensus 159 ~~~ea~~AL~~LGy~~~ea~~av~~ 183 (203)
T 1cuk_A 159 AEQEAVARLVALGYKPQEASRMVSK 183 (203)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3478999999999999999999966
No 149
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=25.51 E-value=5.9e+02 Score=26.47 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=28.5
Q ss_pred CCchHH--HHHHHHHHHhcCCCHHHHHHHHHHccCC---------HHHHHHHHhhcCC
Q 006751 218 IDISEE--LARISEIELRYKCSKQEVERAVVASEGD---------LDKAEDTIKVQKQ 264 (632)
Q Consensus 218 iDIseE--La~L~eMevsyGFs~~qAeKALkeTdGD---------VERAVEWLFSHpD 264 (632)
+.+++| -+.|..|...|| ..+++.+.+....+. -++|++||..+-.
T Consensus 360 i~vt~eev~~~i~~~a~~y~-~~~~~~~~~~~~~~~~~~l~~~i~~~K~~~~l~~~a~ 416 (432)
T 1w26_A 360 LKADEERVKGLIEEMASAYE-DPKEVIEFYSKNKELMDNMRNVALEEQAVEAVLAKAK 416 (432)
T ss_dssp CCCCHHHHHHHHHHHHTTSS-CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTSB
T ss_pred CCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCc
Confidence 345555 344666667899 777755444433332 2589999998764
No 150
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=25.02 E-value=82 Score=30.57 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=38.0
Q ss_pred CCCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhcCCCHHHHHHHHHH
Q 006751 113 RQDPIPGSDNDRREKIRLKNEKKHQRQREKRAQELHERCCGYLMSR-KLEALSQQLVAMGFSSERATLALML 183 (632)
Q Consensus 113 ~~~~ipg~dndkreKiR~KNEkKHqRqkErraqElhERC~~yLmsR-KlE~LVqQLvAMGFpe~RCkKALia 183 (632)
+...|||....+-++|...-..|=..... .. . ..-... ..+++++.|+++||....+.+||-.
T Consensus 124 ~L~~vpGIG~KtA~rIi~elk~kl~~~~~--~~---~---~~~~~~~~~~ea~~AL~~LGy~~~ea~~av~~ 187 (212)
T 2ztd_A 124 ALTRVPGIGKRGAERMVLELRDKVGVAAT--GG---A---LSTNGHAVRSPVVEALVGLGFAAKQAEEATDT 187 (212)
T ss_dssp HHHTSTTCCHHHHHHHHHHHTTTCC---------------------CCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHHHHhhccccc--cc---c---ccccCcccHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34478999988888887544332110000 00 0 000112 3578999999999999999999854
No 151
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=24.95 E-value=36 Score=29.10 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHccCCHHHHHHHH
Q 006751 237 SKQEVERAVVASEGDLDKAEDTI 259 (632)
Q Consensus 237 s~~qAeKALkeTdGDVERAVEWL 259 (632)
....+++||..|+||+.+|++.|
T Consensus 59 Er~~I~~aL~~~~gn~~~AA~~L 81 (98)
T 1eto_A 59 EQPLLDMVMQYTLGNQTRAALMM 81 (98)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 46678999999999999999977
No 152
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=24.87 E-value=3e+02 Score=24.84 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhC-CCHHHHHHHhhhcCCcccCCCCCcccCCCCCCCCchHHHHHHHHHHHhcCCCHHH
Q 006751 162 ALSQQLVAMGFSSERATLALMLNE-GRVEESVNWLFEVSEEEARNTDPKLESSGSLKIDISEELARISEIELRYKCSKQE 240 (632)
Q Consensus 162 ~LVqQLvAMGFpe~RCkKALiatN-gDVEAAMnWLFEHMEDpDiD~P~~l~s~~~~~iDIseELa~L~eMevsyGFs~~q 240 (632)
.|.+.|..-|++......||-... .-.|.|...+-.... . ... +.-.+-..+...|.+=||+.+.
T Consensus 86 ~I~~eL~~KGI~~~~I~~al~~~~~de~e~a~~l~~Kk~~-----------~--~~~-~~~~~k~K~~~~L~rrGF~~~~ 151 (162)
T 3dfg_A 86 HIRAELGTHGLDSDAVSAAMATFEGDWTENALDLIRRRFG-----------E--DGP-VDLAQRRKAADLLARRGFDGNS 151 (162)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTTCCSCHHHHHHHHHHHHHC-----------T--TCC-CSHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCcHhHHHHHHHHHHHhcC-----------C--CCC-CCHHHHHHHHHHHHHCCCCHHH
Confidence 566666677777776666664432 223333333322111 0 001 1123466777889999999999
Q ss_pred HHHHHHHc
Q 006751 241 VERAVVAS 248 (632)
Q Consensus 241 AeKALkeT 248 (632)
++++|.+.
T Consensus 152 I~~~l~~~ 159 (162)
T 3dfg_A 152 IRLATRFD 159 (162)
T ss_dssp HHHHTTC-
T ss_pred HHHHHhcC
Confidence 99998754
No 153
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=24.64 E-value=19 Score=36.41 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHH-hCCCHHHHHHHhhhcCCcccCCCCCcccCCCCCCCCchHHHHHHHHHHHhcCCCHH
Q 006751 161 EALSQQLVAMGFSSERATLALML-NEGRVEESVNWLFEVSEEEARNTDPKLESSGSLKIDISEELARISEIELRYKCSKQ 239 (632)
Q Consensus 161 E~LVqQLvAMGFpe~RCkKALia-tNgDVEAAMnWLFEHMEDpDiD~P~~l~s~~~~~iDIseELa~L~eMevsyGFs~~ 239 (632)
+.|++=|...||++.-..|.|.. +..|.-.-++|||.+.| |... + . +..+.+||-.+.. .+|++-.
T Consensus 19 ~~i~~fL~~~~~~~~is~k~L~~Pt~KdF~~if~fL~~~id-p~~~----~-~----~~k~eeev~~~lK---~L~YP~~ 85 (315)
T 2ve7_A 19 RQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLC-PSYE----L-P----DTKFEEEVPRIFK---DLGYPFA 85 (315)
T ss_dssp HHHHHHHHHTTCSSCCCTGGGSSCCHHHHHHHHHHHHTTTS-TTCC----C-C----SSCHHHHHHHHHH---HTTCSSC
T ss_pred HHHHHHHHhcCCCCCCCcccCCCCCHHHHHHHHHHHHHhcC-CCCc----c-C----CCChHHHHHHHHH---HcCCCce
Confidence 36778889999997666666655 57899999999999984 4432 2 1 1235566555423 3488877
Q ss_pred HHHHHHHHccCC-----HHHHHHHHh
Q 006751 240 EVERAVVASEGD-----LDKAEDTIK 260 (632)
Q Consensus 240 qAeKALkeTdGD-----VERAVEWLF 260 (632)
.-+-+|.+-++- +=.|+.||-
T Consensus 86 isKS~L~a~g~pHsWp~~Lg~L~WLv 111 (315)
T 2ve7_A 86 LSKSSMYTVGAPHTWPHIVAALVWLI 111 (315)
T ss_dssp CCHHHHHTTTSTTTHHHHHHHHHHHH
T ss_pred eCHHHhcCCCCCCcHHHHHHHHHHHH
Confidence 778899888872 778999994
No 154
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=24.06 E-value=74 Score=30.30 Aligned_cols=102 Identities=12% Similarity=0.070 Sum_probs=64.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHh----CC---CHHHHHHHhh-h-cCCcccCCCCCcccCCCCCCCCchHH-HHHHHH
Q 006751 160 LEALSQQLVAMGFSSERATLALMLN----EG---RVEESVNWLF-E-VSEEEARNTDPKLESSGSLKIDISEE-LARISE 229 (632)
Q Consensus 160 lE~LVqQLvAMGFpe~RCkKALiat----Ng---DVEAAMnWLF-E-HMEDpDiD~P~~l~s~~~~~iDIseE-La~L~e 229 (632)
+...++-|.+.||+.....+++..+ .. ++...++||- + +..+.++-.- + .....-...+.| +..-.+
T Consensus 76 l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~l--l-~~~P~il~~s~e~~~~~v~ 152 (270)
T 3m66_A 76 LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDL--V-VRLPRLLTGSLEPVKENMK 152 (270)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHH--H-HHSGGGGTSCSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHH--H-HhCCcceeechHHHHHHHH
Confidence 4467788999999999888887663 22 4667888884 3 4444333211 1 111111223444 443335
Q ss_pred -HHHhcCCCHHHHHHHHHHccC-------CHHHHHHHHhhcCC
Q 006751 230 -IELRYKCSKQEVERAVVASEG-------DLDKAEDTIKVQKQ 264 (632)
Q Consensus 230 -MevsyGFs~~qAeKALkeTdG-------DVERAVEWLFSHpD 264 (632)
+..++||+.+++.+++..+=. .+...+++|.....
T Consensus 153 ~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg 195 (270)
T 3m66_A 153 VYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMS 195 (270)
T ss_dssp HHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhC
Confidence 457899999999999998753 56777888866544
No 155
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=23.55 E-value=22 Score=29.24 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHccCCHHHHHHHH
Q 006751 236 CSKQEVERAVVASEGDLDKAEDTI 259 (632)
Q Consensus 236 Fs~~qAeKALkeTdGDVERAVEWL 259 (632)
|....+++||..|+||+.+|++.|
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L 74 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL 74 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 457788999999999999999876
No 156
>1dvo_A FINO, fertility inhibition protein O; repressor, bacterial conjugation, X-RAY crystallography, transcription; 2.00A {Escherichia coli} SCOP: a.136.1.1
Probab=22.78 E-value=97 Score=29.04 Aligned_cols=58 Identities=24% Similarity=0.192 Sum_probs=39.6
Q ss_pred HhCCCHHHHHHHhhhcCCcc-cCCCCCcccCCCCCCCCchHH-HHHHHHHHHhcCCCHHHHHHHHHHc
Q 006751 183 LNEGRVEESVNWLFEVSEEE-ARNTDPKLESSGSLKIDISEE-LARISEIELRYKCSKQEVERAVVAS 248 (632)
Q Consensus 183 atNgDVEAAMnWLFEHMEDp-DiD~P~~l~s~~~~~iDIseE-La~L~eMevsyGFs~~qAeKALkeT 248 (632)
.....++++++||.++-..- +...+ -.+++.|-++ ++.|.+- -++|+..+.++||...
T Consensus 36 ~~~~~~~e~i~~L~~~fP~~F~~~~~------kPLKIGI~~DL~a~l~~~--~~~ls~~~Lr~AL~~y 95 (152)
T 1dvo_A 36 LNLPTLDEAVNTLKPWWPGLFDGDTP------RLLACGIRDVLLEDVAQR--NIPLSHKKLRRAMKAI 95 (152)
T ss_dssp GSSCCHHHHHHHHTTTCGGGEETTEE------CCBCTTHHHHHHHHHHHT--TCSCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHCHHhcCCCCC------CCccccHHHHHHHHHHhc--cCCCCHHHHHHHHHHH
Confidence 45678999999998887541 11111 1247788888 5556442 2489999999999864
No 157
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=22.58 E-value=3.6e+02 Score=24.32 Aligned_cols=98 Identities=22% Similarity=0.212 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhh--hhhHHHHHHHHhcCCCHHHHHHHHHHh-----CCCHHHHHHHhhhcCCcccCCCCCcccCCCCC
Q 006751 144 AQELHERCCGYLMS--RKLEALSQQLVAMGFSSERATLALMLN-----EGRVEESVNWLFEVSEEEARNTDPKLESSGSL 216 (632)
Q Consensus 144 aqElhERC~~yLms--RKlE~LVqQLvAMGFpe~RCkKALiat-----NgDVEAAMnWLFEHMEDpDiD~P~~l~s~~~~ 216 (632)
.+++.++|..||-. |--.+|.+.|...||+......+|-.. =+|..=|-.|+-.++. .+.+
T Consensus 16 ~~~a~~~Al~~Ls~r~~s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~----------~~~G-- 83 (162)
T 3dfg_A 16 EQTPVQRALGLLVHREHSKKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRAS----------SGYG-- 83 (162)
T ss_dssp -CCHHHHHHHHHHHSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHT----------TTCC--
T ss_pred HHHHHHHHHHHhhchhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH----------cccc--
Confidence 34567788888854 445689999999999988665555441 2233444445433321 0111
Q ss_pred CCCchHHHHHHHHHHHhcCCCHHHHHHHHHHccCC-HHHHHHHHh
Q 006751 217 KIDISEELARISEIELRYKCSKQEVERAVVASEGD-LDKAEDTIK 260 (632)
Q Consensus 217 ~iDIseELa~L~eMevsyGFs~~qAeKALkeTdGD-VERAVEWLF 260 (632)
. ..|..-|..-|++.+.++.||.+.+.| ++.|...+.
T Consensus 84 ~-------~~I~~eL~~KGI~~~~I~~al~~~~~de~e~a~~l~~ 121 (162)
T 3dfg_A 84 P-------LHIRAELGTHGLDSDAVSAAMATFEGDWTENALDLIR 121 (162)
T ss_dssp H-------HHHHHHHHHTTCCHHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred H-------HHHHHHHHHcCCCHHHHHHHHHhCcHhHHHHHHHHHH
Confidence 1 233334456699999999999988755 345555543
No 158
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=21.84 E-value=2e+02 Score=23.01 Aligned_cols=53 Identities=19% Similarity=0.058 Sum_probs=32.3
Q ss_pred HHHHHHHhhhcCCcccCCCCCcccCCCCCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHccCC----------HHHHHH
Q 006751 188 VEESVNWLFEVSEEEARNTDPKLESSGSLKIDISEELARISEIELRYKCSKQEVERAVVASEGD----------LDKAED 257 (632)
Q Consensus 188 VEAAMnWLFEHMEDpDiD~P~~l~s~~~~~iDIseELa~L~eMevsyGFs~~qAeKALkeTdGD----------VERAVE 257 (632)
++.+++||.+|..++++. |..|++. +|++.....+.+++.=|- +++|.+
T Consensus 4 ~~~i~~~i~~~~~~~~~~------------------~~~lA~~---~~~S~~~l~r~fk~~~g~s~~~~~~~~Rl~~A~~ 62 (103)
T 3lsg_A 4 KELIQNIIEESYTDSQFT------------------LSVLSEK---LDLSSGYLSIMFKKNFGIPFQDYLLQKRMEKAKL 62 (103)
T ss_dssp HHHHHHHHHHHTTCTTCC------------------HHHHHHH---TTCCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCC------------------HHHHHHH---HCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 578889999887653331 2233333 366666666666665443 777877
Q ss_pred HHhh
Q 006751 258 TIKV 261 (632)
Q Consensus 258 WLFS 261 (632)
.|..
T Consensus 63 lL~~ 66 (103)
T 3lsg_A 63 LLLT 66 (103)
T ss_dssp HHHH
T ss_pred HHHC
Confidence 7754
No 159
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=21.60 E-value=39 Score=25.99 Aligned_cols=21 Identities=10% Similarity=-0.016 Sum_probs=17.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHH
Q 006751 238 KQEVERAVVASEGDLDKAEDTI 259 (632)
Q Consensus 238 ~~qAeKALkeTdGDVERAVEWL 259 (632)
.+.+++||..| ||+.+|++.|
T Consensus 23 r~~I~~aL~~~-gn~~~aA~~L 43 (61)
T 1g2h_A 23 AQVLKLFYAEY-PSTRKLAQRL 43 (61)
T ss_dssp HHHHHHHHHHS-CSHHHHHHHT
T ss_pred HHHHHHHHHHh-CCHHHHHHHh
Confidence 45678999999 9999999876
No 160
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=20.80 E-value=1.1e+02 Score=29.36 Aligned_cols=20 Identities=20% Similarity=0.081 Sum_probs=16.4
Q ss_pred HHHHhcCCCHHHHHHHHHHc
Q 006751 229 EIELRYKCSKQEVERAVVAS 248 (632)
Q Consensus 229 eMevsyGFs~~qAeKALkeT 248 (632)
+-|+.+||++.+|++||.+.
T Consensus 165 ~AL~~LGy~~~ea~~av~~~ 184 (203)
T 1cuk_A 165 ARLVALGYKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHcCCCHHHHHHHHHHh
Confidence 44455699999999999987
No 161
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=20.05 E-value=84 Score=24.98 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHc
Q 006751 222 EELARISEIELRYKCSKQEVERAVVAS 248 (632)
Q Consensus 222 eELa~L~eMevsyGFs~~qAeKALkeT 248 (632)
-|+..|.++...|||+.+.+..||..|
T Consensus 21 ~e~~~i~~w~~~~~~~~elI~~A~~~a 47 (78)
T 2zc2_A 21 FELEDLQKTVSDDKTDPDLVRSALREA 47 (78)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 468888888888999999999999987
Done!